Query 002187
Match_columns 955
No_of_seqs 517 out of 4383
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 18:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9E-95 2E-99 855.4 44.9 777 3-834 2-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-65 1E-69 638.9 48.2 676 174-936 181-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.5E-45 7.6E-50 395.0 15.7 279 182-467 1-286 (287)
4 PLN00113 leucine-rich repeat r 99.9 6.4E-24 1.4E-28 268.4 16.8 361 539-936 93-468 (968)
5 PLN00113 leucine-rich repeat r 99.9 4.4E-23 9.4E-28 260.8 17.8 351 539-932 69-440 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.6E-25 5.6E-30 237.1 -4.6 344 539-937 32-379 (1255)
7 KOG4194 Membrane glycoprotein 99.9 2.1E-22 4.7E-27 214.1 4.1 40 892-932 388-428 (873)
8 KOG4194 Membrane glycoprotein 99.8 4.5E-22 9.7E-27 211.7 3.3 336 542-928 105-447 (873)
9 KOG0444 Cytoskeletal regulator 99.8 4.3E-23 9.4E-28 220.3 -6.7 321 539-913 55-379 (1255)
10 PLN03210 Resistant to P. syrin 99.8 9.8E-20 2.1E-24 229.9 19.4 339 539-934 589-944 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.3E-21 7E-26 196.6 -8.2 149 541-697 70-218 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 3.4E-20 7.4E-25 189.2 -8.3 342 544-930 50-468 (565)
13 KOG0618 Serine/threonine phosp 99.6 2.9E-18 6.2E-23 193.0 -8.1 142 541-695 47-188 (1081)
14 KOG0618 Serine/threonine phosp 99.6 3E-17 6.6E-22 184.9 -6.3 279 550-849 9-328 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 3.4E-14 7.4E-19 166.3 13.5 257 590-932 201-457 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.5 6.4E-15 1.4E-19 176.4 4.9 340 561-948 521-879 (889)
17 PRK15387 E3 ubiquitin-protein 99.4 3.1E-13 6.7E-18 158.4 11.6 251 544-907 206-456 (788)
18 PRK00411 cdc6 cell division co 99.4 9.1E-11 2E-15 132.6 30.2 322 174-511 27-380 (394)
19 PRK15370 E3 ubiquitin-protein 99.4 2.8E-13 6E-18 160.0 9.5 93 590-693 178-270 (754)
20 PRK04841 transcriptional regul 99.4 3.7E-11 8E-16 151.6 28.4 293 176-516 13-332 (903)
21 PRK15370 E3 ubiquitin-protein 99.4 4.3E-13 9.3E-18 158.4 9.3 248 540-877 179-426 (754)
22 KOG0617 Ras suppressor protein 99.3 1.6E-14 3.5E-19 131.0 -7.3 150 561-721 31-182 (264)
23 KOG4237 Extracellular matrix p 99.3 2E-13 4.3E-18 140.2 -0.9 129 539-672 67-199 (498)
24 TIGR02928 orc1/cdc6 family rep 99.3 3E-09 6.6E-14 118.9 30.6 302 175-492 13-351 (365)
25 KOG4237 Extracellular matrix p 99.3 2.5E-13 5.5E-18 139.5 -2.7 268 551-848 58-339 (498)
26 TIGR03015 pepcterm_ATPase puta 99.2 1.2E-09 2.7E-14 116.5 23.3 182 204-390 43-242 (269)
27 KOG0617 Ras suppressor protein 99.2 2.4E-13 5.3E-18 123.4 -5.4 150 539-696 33-184 (264)
28 PF01637 Arch_ATPase: Archaeal 99.1 2.3E-10 5E-15 119.5 9.7 194 179-385 1-233 (234)
29 PRK00080 ruvB Holliday junctio 99.1 5E-09 1.1E-13 114.5 18.3 278 176-491 24-310 (328)
30 cd00116 LRR_RI Leucine-rich re 99.0 1.3E-11 2.8E-16 135.7 -3.1 87 584-671 17-118 (319)
31 COG2909 MalT ATP-dependent tra 99.0 4.4E-08 9.4E-13 111.9 24.3 297 176-517 18-339 (894)
32 PF05729 NACHT: NACHT domain 99.0 2.8E-09 6.2E-14 104.5 11.8 143 205-353 1-163 (166)
33 cd00116 LRR_RI Leucine-rich re 99.0 4.9E-11 1.1E-15 131.1 -1.0 111 560-672 20-148 (319)
34 TIGR00635 ruvB Holliday juncti 99.0 2.2E-08 4.9E-13 108.8 18.7 275 177-491 4-289 (305)
35 PTZ00112 origin recognition co 98.9 3E-07 6.5E-12 105.9 25.1 303 175-490 753-1085(1164)
36 KOG4341 F-box protein containi 98.8 1.5E-10 3.3E-15 120.5 -5.2 306 590-954 138-456 (483)
37 PRK06893 DNA replication initi 98.7 2.9E-07 6.4E-12 94.7 15.7 153 204-387 39-204 (229)
38 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.2E-13 98.8 4.3 129 561-698 17-153 (175)
39 PRK13342 recombination factor 98.7 4.3E-07 9.3E-12 102.4 16.8 178 177-388 12-198 (413)
40 PF13401 AAA_22: AAA domain; P 98.6 1.3E-07 2.8E-12 88.5 8.3 118 203-322 3-125 (131)
41 COG4886 Leucine-rich repeat (L 98.6 3E-08 6.6E-13 112.2 4.8 107 586-695 112-219 (394)
42 PF14580 LRR_9: Leucine-rich r 98.6 1.9E-08 4E-13 97.0 1.8 108 586-698 15-126 (175)
43 PRK07003 DNA polymerase III su 98.6 3.6E-06 7.9E-11 96.9 20.0 196 177-388 16-223 (830)
44 KOG0532 Leucine-rich repeat (L 98.6 2.9E-09 6.3E-14 115.1 -4.8 123 566-696 78-200 (722)
45 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.5E-06 3.3E-11 89.9 14.9 170 182-388 22-203 (226)
46 PRK04195 replication factor C 98.5 7.3E-06 1.6E-10 94.4 21.5 256 176-475 13-279 (482)
47 PRK05564 DNA polymerase III su 98.5 2.3E-06 5E-11 92.9 16.4 179 177-385 4-189 (313)
48 PRK14961 DNA polymerase III su 98.5 3.5E-06 7.5E-11 93.2 17.8 192 177-385 16-219 (363)
49 COG3899 Predicted ATPase [Gene 98.5 3.8E-06 8.1E-11 102.2 19.3 313 178-514 1-384 (849)
50 COG1474 CDC6 Cdc6-related prot 98.5 4.3E-05 9.4E-10 83.5 25.4 209 176-388 16-240 (366)
51 PF13191 AAA_16: AAA ATPase do 98.5 4.4E-07 9.5E-12 90.7 8.5 51 178-231 1-51 (185)
52 PF13173 AAA_14: AAA domain 98.5 8.5E-07 1.8E-11 82.3 9.6 120 204-345 2-127 (128)
53 PTZ00202 tuzin; Provisional 98.4 6.1E-06 1.3E-10 88.5 16.6 166 171-352 256-433 (550)
54 PRK14960 DNA polymerase III su 98.4 4E-06 8.8E-11 95.6 16.1 193 177-385 15-218 (702)
55 cd00009 AAA The AAA+ (ATPases 98.4 1.8E-06 3.9E-11 82.6 11.4 125 180-324 1-131 (151)
56 PRK14963 DNA polymerase III su 98.4 8.5E-07 1.9E-11 101.0 10.5 201 177-390 14-222 (504)
57 PRK14949 DNA polymerase III su 98.4 4.5E-06 9.7E-11 98.2 16.4 183 177-386 16-220 (944)
58 KOG3207 Beta-tubulin folding c 98.4 3.9E-08 8.5E-13 103.4 -0.4 215 608-907 116-337 (505)
59 COG2256 MGS1 ATPase related to 98.4 8.7E-07 1.9E-11 93.2 9.4 173 176-383 29-209 (436)
60 KOG1909 Ran GTPase-activating 98.4 2.8E-08 6E-13 101.8 -1.6 260 583-907 23-309 (382)
61 PRK06645 DNA polymerase III su 98.4 5.8E-06 1.3E-10 93.8 16.6 194 177-383 21-226 (507)
62 PRK12402 replication factor C 98.4 4.9E-06 1.1E-10 92.0 15.6 198 177-385 15-225 (337)
63 KOG1259 Nischarin, modulator o 98.4 8.8E-08 1.9E-12 95.5 1.2 22 891-913 394-415 (490)
64 TIGR02903 spore_lon_C ATP-depe 98.4 9.3E-06 2E-10 95.5 18.3 203 177-389 154-398 (615)
65 PRK14957 DNA polymerase III su 98.4 8.2E-06 1.8E-10 93.2 16.5 187 177-390 16-225 (546)
66 KOG3207 Beta-tubulin folding c 98.4 2.5E-07 5.4E-12 97.5 3.9 158 539-699 121-285 (505)
67 cd01128 rho_factor Transcripti 98.4 5.7E-07 1.2E-11 92.6 6.3 88 205-293 17-113 (249)
68 PRK12323 DNA polymerase III su 98.4 7.3E-06 1.6E-10 93.3 15.4 197 177-386 16-225 (700)
69 PLN03025 replication factor C 98.3 7.5E-06 1.6E-10 89.1 14.9 183 177-384 13-198 (319)
70 PRK00440 rfc replication facto 98.3 1.2E-05 2.7E-10 88.1 16.5 183 176-385 16-202 (319)
71 PF05496 RuvB_N: Holliday junc 98.3 3.9E-06 8.4E-11 82.6 10.7 180 176-388 23-223 (233)
72 PRK14964 DNA polymerase III su 98.3 1.3E-05 2.9E-10 90.1 15.9 181 177-383 13-214 (491)
73 PRK14962 DNA polymerase III su 98.3 2.4E-05 5.2E-10 88.6 18.1 202 177-404 14-240 (472)
74 COG3903 Predicted ATPase [Gene 98.3 1.8E-06 3.8E-11 91.7 8.1 269 203-490 13-291 (414)
75 PRK07994 DNA polymerase III su 98.3 1.2E-05 2.6E-10 93.3 15.5 195 177-387 16-221 (647)
76 PRK14956 DNA polymerase III su 98.3 1.1E-05 2.3E-10 89.7 14.4 196 177-384 18-220 (484)
77 KOG0532 Leucine-rich repeat (L 98.3 3.7E-08 8.1E-13 106.7 -4.7 139 550-698 109-247 (722)
78 PRK09376 rho transcription ter 98.3 1.7E-06 3.7E-11 92.5 7.6 100 188-293 158-266 (416)
79 PF13855 LRR_8: Leucine rich r 98.3 1.1E-06 2.4E-11 69.3 4.3 58 590-648 1-60 (61)
80 PRK14951 DNA polymerase III su 98.2 2E-05 4.4E-10 91.3 16.2 197 177-386 16-225 (618)
81 PRK08691 DNA polymerase III su 98.2 1.6E-05 3.4E-10 91.8 15.0 193 177-385 16-219 (709)
82 PRK08727 hypothetical protein; 98.2 3.6E-05 7.9E-10 79.4 16.4 148 205-383 42-201 (233)
83 PRK05896 DNA polymerase III su 98.2 2.4E-05 5.2E-10 89.4 16.2 196 177-388 16-223 (605)
84 KOG1259 Nischarin, modulator o 98.2 1.2E-07 2.6E-12 94.6 -2.0 126 562-696 283-410 (490)
85 PRK13341 recombination factor 98.2 5.7E-06 1.2E-10 98.1 11.5 172 177-381 28-212 (725)
86 TIGR02397 dnaX_nterm DNA polym 98.2 4.7E-05 1E-09 84.8 18.0 184 177-387 14-219 (355)
87 PRK07940 DNA polymerase III su 98.2 3.7E-05 7.9E-10 85.0 16.5 192 177-386 5-213 (394)
88 PRK09112 DNA polymerase III su 98.2 2.5E-05 5.4E-10 85.1 15.0 198 175-387 21-241 (351)
89 PRK07471 DNA polymerase III su 98.2 5.5E-05 1.2E-09 82.9 17.6 199 175-387 17-239 (365)
90 KOG4341 F-box protein containi 98.2 6E-08 1.3E-12 101.5 -5.2 264 613-936 138-417 (483)
91 PRK14958 DNA polymerase III su 98.2 2.4E-05 5.2E-10 89.6 15.2 183 177-385 16-219 (509)
92 TIGR00678 holB DNA polymerase 98.2 5.8E-05 1.2E-09 75.4 15.8 91 282-382 95-187 (188)
93 COG4886 Leucine-rich repeat (L 98.2 1.5E-06 3.2E-11 98.4 4.8 98 591-691 141-238 (394)
94 PRK14955 DNA polymerase III su 98.1 3.2E-05 6.8E-10 86.7 15.0 199 177-385 16-227 (397)
95 PLN03150 hypothetical protein; 98.1 3.5E-06 7.6E-11 100.0 7.4 93 591-683 419-512 (623)
96 KOG2028 ATPase related to the 98.1 5.2E-05 1.1E-09 78.3 14.5 176 175-381 142-331 (554)
97 PLN03150 hypothetical protein; 98.1 3.3E-06 7.1E-11 100.2 6.7 105 565-672 420-526 (623)
98 KOG1909 Ran GTPase-activating 98.1 9.6E-07 2.1E-11 90.8 1.9 87 561-648 28-131 (382)
99 PRK09111 DNA polymerase III su 98.1 4.5E-05 9.8E-10 88.7 15.8 198 177-387 24-234 (598)
100 PRK08903 DnaA regulatory inact 98.1 6.8E-05 1.5E-09 77.5 15.5 153 203-390 41-203 (227)
101 PF14516 AAA_35: AAA-like doma 98.1 0.00026 5.6E-09 77.2 20.6 202 175-393 9-246 (331)
102 PRK09087 hypothetical protein; 98.1 3.8E-05 8.3E-10 78.5 13.2 141 204-385 44-194 (226)
103 KOG2227 Pre-initiation complex 98.1 0.00013 2.8E-09 78.5 17.2 214 175-390 148-376 (529)
104 PRK14959 DNA polymerase III su 98.1 6.9E-05 1.5E-09 86.2 15.9 197 177-390 16-225 (624)
105 PRK08084 DNA replication initi 98.1 0.00015 3.2E-09 75.0 17.0 152 205-387 46-210 (235)
106 PRK14969 DNA polymerase III su 98.1 6E-05 1.3E-09 87.0 15.5 187 177-389 16-224 (527)
107 PF13855 LRR_8: Leucine rich r 98.1 3.4E-06 7.5E-11 66.5 3.7 58 613-672 1-60 (61)
108 TIGR01242 26Sp45 26S proteasom 98.1 3.4E-05 7.4E-10 85.7 12.7 180 175-380 120-328 (364)
109 PRK07764 DNA polymerase III su 98.1 8.5E-05 1.8E-09 89.4 16.8 198 177-390 15-226 (824)
110 PRK14952 DNA polymerase III su 98.0 0.00011 2.4E-09 85.0 16.9 199 177-391 13-225 (584)
111 TIGR00767 rho transcription te 98.0 1.7E-05 3.6E-10 85.6 8.7 88 205-293 169-265 (415)
112 KOG0989 Replication factor C, 98.0 5.9E-05 1.3E-09 76.7 12.0 192 175-387 34-232 (346)
113 PRK14950 DNA polymerase III su 98.0 0.00016 3.4E-09 85.2 17.6 194 177-386 16-221 (585)
114 PRK14954 DNA polymerase III su 98.0 0.00017 3.8E-09 84.0 17.3 202 177-387 16-230 (620)
115 PRK14970 DNA polymerase III su 98.0 0.0002 4.4E-09 79.9 17.2 186 177-388 17-212 (367)
116 PRK05642 DNA replication initi 98.0 0.00019 4.2E-09 74.0 15.3 153 204-387 45-209 (234)
117 PRK11331 5-methylcytosine-spec 98.0 5E-05 1.1E-09 83.4 11.3 120 177-308 175-298 (459)
118 COG2255 RuvB Holliday junction 98.0 0.00019 4.1E-09 72.3 14.3 177 177-386 26-223 (332)
119 PF05621 TniB: Bacterial TniB 97.9 0.0003 6.6E-09 72.9 16.1 204 177-384 34-259 (302)
120 PRK14953 DNA polymerase III su 97.9 0.00038 8.2E-09 79.4 18.5 184 177-387 16-221 (486)
121 KOG2543 Origin recognition com 97.9 0.00049 1.1E-08 72.3 17.0 167 175-352 4-192 (438)
122 PRK07133 DNA polymerase III su 97.9 0.00033 7.1E-09 82.1 17.6 193 177-388 18-222 (725)
123 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 57.9 3.7 38 591-629 2-39 (44)
124 CHL00181 cbbX CbbX; Provisiona 97.9 0.00071 1.5E-08 71.9 18.8 135 205-355 60-211 (287)
125 PRK14971 DNA polymerase III su 97.9 0.00028 6E-09 82.8 17.1 181 177-384 17-220 (614)
126 PRK14087 dnaA chromosomal repl 97.9 0.00034 7.3E-09 79.3 17.2 168 204-387 141-320 (450)
127 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 57.6 3.9 40 613-654 1-40 (44)
128 PF00308 Bac_DnaA: Bacterial d 97.9 0.00049 1.1E-08 70.1 16.5 181 178-383 10-205 (219)
129 PHA02544 44 clamp loader, smal 97.9 0.00017 3.7E-09 78.8 14.1 150 175-351 19-171 (316)
130 KOG2120 SCF ubiquitin ligase, 97.9 6.2E-07 1.3E-11 89.7 -4.8 166 734-932 204-375 (419)
131 PRK14948 DNA polymerase III su 97.8 0.00047 1E-08 81.0 17.6 196 177-386 16-222 (620)
132 TIGR02880 cbbX_cfxQ probable R 97.8 0.00051 1.1E-08 73.0 16.2 133 206-354 60-209 (284)
133 KOG0531 Protein phosphatase 1, 97.8 2.7E-06 5.9E-11 96.4 -1.2 127 561-696 70-197 (414)
134 KOG2120 SCF ubiquitin ligase, 97.8 9.5E-07 2.1E-11 88.4 -4.5 117 734-877 254-374 (419)
135 PRK08451 DNA polymerase III su 97.8 0.00057 1.2E-08 77.9 17.0 181 177-387 14-219 (535)
136 PRK06305 DNA polymerase III su 97.8 0.00056 1.2E-08 77.5 16.7 184 177-388 17-225 (451)
137 KOG0531 Protein phosphatase 1, 97.8 4.9E-06 1.1E-10 94.3 0.1 103 561-671 93-196 (414)
138 TIGR02881 spore_V_K stage V sp 97.8 0.00042 9.1E-09 73.1 14.6 161 178-354 7-192 (261)
139 PRK14965 DNA polymerase III su 97.7 0.00046 1E-08 80.8 15.4 197 177-389 16-224 (576)
140 PRK06647 DNA polymerase III su 97.7 0.0009 2E-08 77.6 17.0 193 177-385 16-219 (563)
141 PRK03992 proteasome-activating 97.7 0.00025 5.5E-09 79.1 12.1 158 176-354 130-316 (389)
142 TIGR00362 DnaA chromosomal rep 97.7 0.0011 2.4E-08 74.9 17.1 157 204-382 136-306 (405)
143 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00046 1E-08 84.3 14.7 152 177-352 187-362 (852)
144 KOG3665 ZYG-1-like serine/thre 97.6 3.8E-05 8.3E-10 90.8 4.5 129 539-672 122-261 (699)
145 KOG1859 Leucine-rich repeat pr 97.6 2.4E-06 5.1E-11 95.5 -5.3 106 585-696 182-290 (1096)
146 PRK12422 chromosomal replicati 97.6 0.0011 2.4E-08 74.8 15.8 153 204-378 141-305 (445)
147 PF00004 AAA: ATPase family as 97.6 0.00019 4.2E-09 66.9 8.0 96 207-322 1-111 (132)
148 PRK07399 DNA polymerase III su 97.6 0.0019 4.2E-08 69.4 16.5 196 177-386 4-221 (314)
149 PRK14088 dnaA chromosomal repl 97.6 0.00088 1.9E-08 75.9 14.4 157 204-381 130-300 (440)
150 PRK05563 DNA polymerase III su 97.6 0.002 4.2E-08 75.2 17.6 192 177-384 16-218 (559)
151 PRK05707 DNA polymerase III su 97.6 0.0012 2.7E-08 71.3 14.5 97 282-386 105-203 (328)
152 CHL00095 clpC Clp protease ATP 97.6 0.00053 1.2E-08 84.2 13.0 154 177-351 179-352 (821)
153 KOG2982 Uncharacterized conser 97.6 5.2E-05 1.1E-09 76.3 3.4 205 587-837 68-286 (418)
154 PRK06620 hypothetical protein; 97.5 0.0012 2.5E-08 67.0 13.0 134 205-383 45-186 (214)
155 TIGR02639 ClpA ATP-dependent C 97.5 0.00079 1.7E-08 81.7 13.9 156 177-353 182-358 (731)
156 PF05673 DUF815: Protein of un 97.5 0.0025 5.4E-08 64.1 14.9 125 173-324 23-152 (249)
157 PRK00149 dnaA chromosomal repl 97.5 0.0022 4.7E-08 73.5 15.9 158 204-383 148-319 (450)
158 PRK14086 dnaA chromosomal repl 97.5 0.0021 4.6E-08 73.9 15.5 154 205-380 315-482 (617)
159 PRK10536 hypothetical protein; 97.5 0.0024 5.2E-08 65.1 13.7 134 175-323 53-213 (262)
160 KOG2982 Uncharacterized conser 97.4 7.3E-05 1.6E-09 75.3 2.5 193 738-955 69-284 (418)
161 COG0593 DnaA ATPase involved i 97.4 0.036 7.7E-07 60.8 23.3 138 203-357 112-261 (408)
162 PRK08116 hypothetical protein; 97.4 0.00055 1.2E-08 72.0 9.3 104 205-323 115-221 (268)
163 smart00382 AAA ATPases associa 97.4 0.00087 1.9E-08 63.2 9.5 87 205-295 3-90 (148)
164 PRK15386 type III secretion pr 97.4 0.00028 6.1E-09 76.8 6.5 67 774-847 45-111 (426)
165 TIGR00602 rad24 checkpoint pro 97.4 0.00091 2E-08 78.0 11.1 53 174-227 81-133 (637)
166 COG0466 Lon ATP-dependent Lon 97.4 0.0047 1E-07 70.5 16.1 166 176-353 322-508 (782)
167 KOG4579 Leucine-rich repeat (L 97.4 3.6E-05 7.7E-10 68.5 -0.3 104 565-671 29-133 (177)
168 PRK10787 DNA-binding ATP-depen 97.3 0.0053 1.1E-07 74.3 17.2 166 176-353 321-506 (784)
169 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0022 4.8E-08 79.1 14.3 154 177-352 173-348 (852)
170 TIGR00763 lon ATP-dependent pr 97.3 0.0081 1.8E-07 73.5 19.0 165 177-353 320-505 (775)
171 COG3267 ExeA Type II secretory 97.3 0.014 3E-07 58.6 16.8 182 203-389 50-248 (269)
172 PRK15386 type III secretion pr 97.3 0.00023 5E-09 77.4 4.8 85 586-681 48-134 (426)
173 PTZ00361 26 proteosome regulat 97.3 0.0025 5.4E-08 71.3 12.7 158 177-354 183-368 (438)
174 PRK08769 DNA polymerase III su 97.3 0.0057 1.2E-07 65.6 14.9 96 282-387 112-209 (319)
175 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3.1E-08 78.4 11.3 156 177-352 186-361 (758)
176 TIGR02639 ClpA ATP-dependent C 97.3 0.0032 7E-08 76.5 14.5 123 177-310 454-580 (731)
177 KOG0991 Replication factor C, 97.3 0.0031 6.7E-08 61.6 11.2 45 176-226 26-70 (333)
178 COG1373 Predicted ATPase (AAA+ 97.2 0.0039 8.4E-08 69.6 13.7 119 206-349 39-163 (398)
179 PRK08058 DNA polymerase III su 97.2 0.0061 1.3E-07 66.4 14.9 162 178-351 6-180 (329)
180 PRK10865 protein disaggregatio 97.2 0.0028 6.1E-08 77.8 13.5 138 177-322 568-720 (857)
181 PRK08118 topology modulation p 97.2 0.00017 3.7E-09 70.0 2.2 34 206-239 3-37 (167)
182 PF13177 DNA_pol3_delta2: DNA 97.2 0.0038 8.3E-08 60.3 11.3 137 181-341 1-162 (162)
183 KOG1644 U2-associated snRNP A' 97.2 0.0006 1.3E-08 65.3 5.2 106 806-930 41-150 (233)
184 KOG3665 ZYG-1-like serine/thre 97.2 0.0002 4.3E-09 84.8 2.5 131 562-696 121-261 (699)
185 PTZ00454 26S protease regulato 97.1 0.0093 2E-07 66.3 15.4 158 176-353 144-329 (398)
186 TIGR03689 pup_AAA proteasome A 97.1 0.0033 7.1E-08 71.5 11.9 165 177-353 182-378 (512)
187 COG0542 clpA ATP-binding subun 97.1 0.0011 2.5E-08 77.6 8.2 123 177-310 491-620 (786)
188 PRK10865 protein disaggregatio 97.1 0.0054 1.2E-07 75.4 14.5 45 177-227 178-222 (857)
189 PF04665 Pox_A32: Poxvirus A32 97.1 0.00072 1.6E-08 68.5 5.7 35 206-242 15-49 (241)
190 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0026 5.7E-08 78.5 11.8 138 177-322 565-717 (852)
191 TIGR02640 gas_vesic_GvpN gas v 97.1 0.013 2.7E-07 61.8 15.3 42 206-252 23-64 (262)
192 TIGR03345 VI_ClpV1 type VI sec 97.1 0.002 4.3E-08 78.9 10.1 136 177-322 566-718 (852)
193 PRK06871 DNA polymerase III su 97.1 0.014 3.1E-07 62.6 15.4 175 186-383 11-200 (325)
194 PRK13531 regulatory ATPase Rav 97.1 0.0027 5.8E-08 70.8 9.9 43 177-227 20-62 (498)
195 PF02562 PhoH: PhoH-like prote 97.0 0.0025 5.3E-08 63.3 8.1 132 180-323 3-156 (205)
196 PRK12377 putative replication 97.0 0.0015 3.1E-08 67.5 6.8 101 205-322 102-205 (248)
197 PRK06090 DNA polymerase III su 97.0 0.034 7.3E-07 59.7 16.9 93 282-386 107-201 (319)
198 PRK08181 transposase; Validate 96.9 0.003 6.6E-08 66.0 8.7 100 206-323 108-209 (269)
199 PRK08939 primosomal protein Dn 96.9 0.0056 1.2E-07 65.6 10.5 122 181-322 135-260 (306)
200 PRK07261 topology modulation p 96.9 0.0024 5.1E-08 62.4 7.1 65 206-293 2-67 (171)
201 CHL00176 ftsH cell division pr 96.9 0.0093 2E-07 70.3 13.2 177 177-378 183-386 (638)
202 KOG2004 Mitochondrial ATP-depe 96.9 0.0065 1.4E-07 69.0 11.1 108 175-294 409-516 (906)
203 KOG1859 Leucine-rich repeat pr 96.9 3.6E-05 7.7E-10 86.4 -6.4 124 539-672 164-290 (1096)
204 PF10443 RNA12: RNA12 protein; 96.9 0.047 1E-06 59.6 17.1 211 182-404 1-297 (431)
205 COG2607 Predicted ATPase (AAA+ 96.9 0.021 4.5E-07 56.5 13.0 123 174-323 57-183 (287)
206 TIGR01241 FtsH_fam ATP-depende 96.9 0.018 3.8E-07 66.9 15.1 179 176-379 54-259 (495)
207 KOG1514 Origin recognition com 96.8 0.038 8.3E-07 63.1 16.7 207 177-389 396-624 (767)
208 CHL00095 clpC Clp protease ATP 96.8 0.0054 1.2E-07 75.5 11.0 138 177-322 509-661 (821)
209 PRK11889 flhF flagellar biosyn 96.8 0.012 2.6E-07 63.6 12.1 90 203-294 240-331 (436)
210 PRK06526 transposase; Provisio 96.8 0.0029 6.3E-08 65.8 7.3 100 205-323 99-201 (254)
211 PRK09183 transposase/IS protei 96.8 0.0046 1E-07 64.8 8.9 100 206-323 104-206 (259)
212 PRK07952 DNA replication prote 96.8 0.0072 1.6E-07 62.2 9.9 103 204-322 99-204 (244)
213 PRK07993 DNA polymerase III su 96.8 0.027 5.9E-07 61.2 14.9 177 186-384 11-202 (334)
214 KOG4579 Leucine-rich repeat (L 96.8 0.0002 4.2E-09 63.9 -1.4 68 587-656 74-141 (177)
215 PRK05541 adenylylsulfate kinas 96.8 0.0055 1.2E-07 60.4 8.7 36 203-240 6-41 (176)
216 PF01695 IstB_IS21: IstB-like 96.8 0.0014 3.1E-08 64.2 4.3 100 205-323 48-150 (178)
217 COG0470 HolB ATPase involved i 96.7 0.0096 2.1E-07 65.4 11.3 143 178-340 2-168 (325)
218 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0018 4E-08 69.4 5.1 51 178-228 52-102 (361)
219 PF07693 KAP_NTPase: KAP famil 96.7 0.068 1.5E-06 58.6 17.7 167 183-352 2-262 (325)
220 TIGR02237 recomb_radB DNA repa 96.7 0.0048 1E-07 62.8 7.9 86 203-292 11-106 (209)
221 PRK06921 hypothetical protein; 96.7 0.0065 1.4E-07 63.8 8.9 99 204-322 117-224 (266)
222 KOG0741 AAA+-type ATPase [Post 96.7 0.047 1E-06 60.1 15.2 150 201-376 535-704 (744)
223 PRK12608 transcription termina 96.6 0.0088 1.9E-07 64.6 9.5 103 185-293 119-230 (380)
224 PRK04296 thymidine kinase; Pro 96.6 0.0039 8.4E-08 62.1 6.5 112 205-323 3-116 (190)
225 PHA00729 NTP-binding motif con 96.6 0.01 2.3E-07 59.5 9.3 25 203-227 16-40 (226)
226 PRK06964 DNA polymerase III su 96.6 0.048 1E-06 59.1 15.0 94 282-387 131-226 (342)
227 PRK04132 replication factor C 96.6 0.034 7.3E-07 67.0 15.0 156 212-387 574-732 (846)
228 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.008 1.7E-07 62.5 8.8 90 203-293 18-125 (235)
229 PRK09361 radB DNA repair and r 96.6 0.0099 2.1E-07 61.3 9.3 46 203-251 22-67 (225)
230 PRK06835 DNA replication prote 96.6 0.0034 7.4E-08 67.7 5.9 102 205-322 184-288 (329)
231 COG1484 DnaC DNA replication p 96.5 0.0046 1E-07 64.4 6.3 79 206-301 107-185 (254)
232 KOG1644 U2-associated snRNP A' 96.5 0.0029 6.2E-08 60.8 4.2 103 590-696 42-151 (233)
233 COG1222 RPT1 ATP-dependent 26S 96.5 0.075 1.6E-06 56.0 14.7 189 177-391 151-372 (406)
234 KOG1051 Chaperone HSP104 and r 96.5 0.02 4.2E-07 68.5 11.8 123 177-310 562-687 (898)
235 PF08423 Rad51: Rad51; InterP 96.5 0.0094 2E-07 62.3 8.3 88 204-292 38-142 (256)
236 PRK11034 clpA ATP-dependent Cl 96.4 0.013 2.9E-07 70.4 10.5 122 178-310 459-584 (758)
237 PF00448 SRP54: SRP54-type pro 96.4 0.013 2.9E-07 58.3 8.9 57 204-262 1-58 (196)
238 PF07728 AAA_5: AAA domain (dy 96.4 0.0014 3.1E-08 61.7 1.9 88 207-307 2-89 (139)
239 KOG2228 Origin recognition com 96.4 0.038 8.3E-07 57.5 12.0 172 177-353 24-219 (408)
240 cd01394 radB RadB. The archaea 96.4 0.0094 2E-07 61.1 7.9 43 203-247 18-60 (218)
241 COG5238 RNA1 Ran GTPase-activa 96.4 0.0018 3.9E-08 64.7 2.4 86 586-671 26-130 (388)
242 KOG1947 Leucine rich repeat pr 96.4 0.00062 1.3E-08 79.5 -1.1 17 734-750 289-305 (482)
243 COG1875 NYN ribonuclease and A 96.4 0.015 3.3E-07 61.1 8.9 135 179-322 226-387 (436)
244 COG2812 DnaX DNA polymerase II 96.4 0.0089 1.9E-07 67.5 7.9 189 177-381 16-215 (515)
245 cd01133 F1-ATPase_beta F1 ATP 96.4 0.019 4E-07 59.7 9.6 85 206-292 71-172 (274)
246 KOG2123 Uncharacterized conser 96.4 0.00036 7.9E-09 69.8 -2.7 100 561-667 17-123 (388)
247 cd01393 recA_like RecA is a b 96.3 0.013 2.8E-07 60.4 8.6 88 203-293 18-124 (226)
248 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.026 5.6E-07 53.6 9.6 116 205-323 3-138 (159)
249 PRK08699 DNA polymerase III su 96.3 0.04 8.6E-07 59.6 12.4 71 282-352 112-184 (325)
250 cd00983 recA RecA is a bacter 96.3 0.012 2.6E-07 62.9 8.1 84 203-293 54-143 (325)
251 PF00158 Sigma54_activat: Sigm 96.3 0.0097 2.1E-07 57.6 6.9 45 179-227 1-45 (168)
252 TIGR02012 tigrfam_recA protein 96.3 0.012 2.6E-07 62.8 7.9 84 203-293 54-143 (321)
253 PF13207 AAA_17: AAA domain; P 96.3 0.003 6.5E-08 57.8 2.9 22 206-227 1-22 (121)
254 PRK12724 flagellar biosynthesi 96.3 0.018 4E-07 63.2 9.3 25 203-227 222-246 (432)
255 TIGR02902 spore_lonB ATP-depen 96.2 0.018 4E-07 66.9 9.9 44 177-226 65-108 (531)
256 COG5238 RNA1 Ran GTPase-activa 96.2 0.0011 2.4E-08 66.1 -0.2 259 607-912 24-318 (388)
257 cd01120 RecA-like_NTPases RecA 96.2 0.019 4.2E-07 55.5 8.6 40 206-247 1-40 (165)
258 PRK09354 recA recombinase A; P 96.2 0.016 3.5E-07 62.4 8.3 84 203-293 59-148 (349)
259 KOG1947 Leucine rich repeat pr 96.2 0.0008 1.7E-08 78.6 -1.8 165 739-936 268-443 (482)
260 CHL00195 ycf46 Ycf46; Provisio 96.1 0.056 1.2E-06 61.7 12.7 159 177-355 228-407 (489)
261 PF14532 Sigma54_activ_2: Sigm 96.1 0.0038 8.2E-08 58.7 2.8 108 180-323 1-110 (138)
262 TIGR01243 CDC48 AAA family ATP 96.1 0.04 8.6E-07 67.4 12.2 180 177-381 178-382 (733)
263 PRK06696 uridine kinase; Valid 96.1 0.0075 1.6E-07 61.9 5.1 44 181-227 2-45 (223)
264 PRK13695 putative NTPase; Prov 96.1 0.0063 1.4E-07 59.8 4.3 22 206-227 2-23 (174)
265 PF13604 AAA_30: AAA domain; P 96.0 0.018 4E-07 57.6 7.5 103 205-322 19-130 (196)
266 TIGR02238 recomb_DMC1 meiotic 96.0 0.018 3.8E-07 61.9 7.5 58 203-261 95-156 (313)
267 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8.1E-08 62.7 2.1 60 610-671 62-126 (260)
268 TIGR03499 FlhF flagellar biosy 96.0 0.03 6.5E-07 59.5 9.1 88 203-292 193-281 (282)
269 PF13671 AAA_33: AAA domain; P 95.9 0.017 3.8E-07 54.5 6.4 21 206-226 1-21 (143)
270 KOG1969 DNA replication checkp 95.9 0.019 4.1E-07 65.6 7.5 89 201-307 323-411 (877)
271 PRK15455 PrkA family serine pr 95.9 0.0061 1.3E-07 68.8 3.6 49 178-226 77-125 (644)
272 TIGR01243 CDC48 AAA family ATP 95.9 0.16 3.5E-06 62.1 16.2 179 177-380 453-657 (733)
273 KOG0744 AAA+-type ATPase [Post 95.8 0.08 1.7E-06 54.8 10.8 80 204-293 177-260 (423)
274 PF07724 AAA_2: AAA domain (Cd 95.8 0.0069 1.5E-07 58.9 3.1 43 203-247 2-45 (171)
275 PLN03187 meiotic recombination 95.8 0.029 6.3E-07 60.8 8.1 58 203-261 125-186 (344)
276 cd03214 ABC_Iron-Siderophores_ 95.8 0.075 1.6E-06 52.5 10.5 118 205-326 26-161 (180)
277 TIGR02239 recomb_RAD51 DNA rep 95.8 0.05 1.1E-06 58.7 9.8 57 203-260 95-155 (316)
278 KOG2123 Uncharacterized conser 95.8 0.00068 1.5E-08 67.9 -4.0 103 588-694 17-126 (388)
279 cd03228 ABCC_MRP_Like The MRP 95.7 0.05 1.1E-06 53.3 9.0 117 205-328 29-160 (171)
280 PLN03186 DNA repair protein RA 95.7 0.041 8.9E-07 59.7 9.1 58 203-261 122-183 (342)
281 PRK10867 signal recognition pa 95.7 0.087 1.9E-06 59.0 11.7 25 202-226 98-122 (433)
282 KOG0735 AAA+-type ATPase [Post 95.7 0.11 2.4E-06 59.4 12.2 160 204-385 431-615 (952)
283 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.07 1.5E-06 50.4 9.4 104 205-327 27-131 (144)
284 PRK05703 flhF flagellar biosyn 95.6 0.09 2E-06 59.2 11.7 87 204-292 221-308 (424)
285 TIGR01817 nifA Nif-specific re 95.6 0.067 1.5E-06 62.9 11.3 135 175-322 194-340 (534)
286 cd03247 ABCC_cytochrome_bd The 95.6 0.037 7.9E-07 54.6 7.7 116 206-327 30-161 (178)
287 COG0572 Udk Uridine kinase [Nu 95.6 0.019 4.1E-07 56.9 5.5 78 202-284 6-85 (218)
288 PF00485 PRK: Phosphoribulokin 95.6 0.04 8.7E-07 55.2 8.0 79 206-287 1-87 (194)
289 COG0542 clpA ATP-binding subun 95.6 0.12 2.5E-06 61.3 12.7 154 177-352 170-345 (786)
290 PRK11608 pspF phage shock prot 95.6 0.029 6.4E-07 61.1 7.4 134 177-322 6-150 (326)
291 PRK12727 flagellar biosynthesi 95.6 0.054 1.2E-06 61.2 9.5 89 203-293 349-438 (559)
292 KOG2035 Replication factor C, 95.6 0.11 2.5E-06 52.5 10.6 209 178-409 14-261 (351)
293 TIGR00708 cobA cob(I)alamin ad 95.6 0.084 1.8E-06 50.8 9.5 117 204-323 5-140 (173)
294 PRK08233 hypothetical protein; 95.6 0.037 8.1E-07 54.8 7.6 24 204-227 3-26 (182)
295 cd03223 ABCD_peroxisomal_ALDP 95.6 0.097 2.1E-06 50.9 10.3 114 206-327 29-152 (166)
296 PRK04301 radA DNA repair and r 95.5 0.082 1.8E-06 57.5 10.7 57 203-260 101-161 (317)
297 PRK15429 formate hydrogenlyase 95.5 0.044 9.5E-07 66.5 9.4 135 177-323 376-521 (686)
298 cd03115 SRP The signal recogni 95.5 0.049 1.1E-06 53.4 8.0 22 206-227 2-23 (173)
299 TIGR01650 PD_CobS cobaltochela 95.5 0.4 8.6E-06 51.3 15.1 58 178-248 46-103 (327)
300 COG1618 Predicted nucleotide k 95.5 0.014 3.1E-07 54.1 3.7 25 205-229 6-30 (179)
301 COG1223 Predicted ATPase (AAA+ 95.5 0.14 3E-06 51.4 10.6 158 175-353 119-297 (368)
302 PF00560 LRR_1: Leucine Rich R 95.4 0.0067 1.5E-07 36.2 1.0 19 615-634 2-20 (22)
303 cd02025 PanK Pantothenate kina 95.4 0.054 1.2E-06 55.3 8.3 73 206-281 1-76 (220)
304 COG0468 RecA RecA/RadA recombi 95.4 0.054 1.2E-06 56.6 8.3 89 202-293 58-151 (279)
305 COG4608 AppF ABC-type oligopep 95.4 0.065 1.4E-06 54.8 8.6 124 205-331 40-178 (268)
306 PRK06067 flagellar accessory p 95.4 0.059 1.3E-06 55.9 8.7 86 203-293 24-130 (234)
307 TIGR00959 ffh signal recogniti 95.4 0.11 2.4E-06 58.2 11.2 25 203-227 98-122 (428)
308 cd01131 PilT Pilus retraction 95.4 0.029 6.3E-07 56.3 6.1 111 206-328 3-114 (198)
309 PRK14722 flhF flagellar biosyn 95.4 0.057 1.2E-06 59.0 8.6 88 204-293 137-225 (374)
310 PRK09270 nucleoside triphospha 95.4 0.075 1.6E-06 54.8 9.2 27 201-227 30-56 (229)
311 PRK05800 cobU adenosylcobinami 95.4 0.023 5E-07 55.2 5.1 80 206-292 3-85 (170)
312 PHA02244 ATPase-like protein 95.4 0.096 2.1E-06 56.6 10.0 22 206-227 121-142 (383)
313 TIGR02974 phageshock_pspF psp 95.3 0.044 9.5E-07 59.7 7.5 45 179-227 1-45 (329)
314 TIGR00554 panK_bact pantothena 95.3 0.081 1.8E-06 55.9 9.2 80 202-283 60-141 (290)
315 KOG0734 AAA+-type ATPase conta 95.3 0.068 1.5E-06 58.9 8.6 53 177-229 304-362 (752)
316 COG1102 Cmk Cytidylate kinase 95.3 0.034 7.4E-07 51.6 5.4 44 206-262 2-45 (179)
317 PRK05439 pantothenate kinase; 95.3 0.1 2.2E-06 55.5 9.9 94 185-284 69-166 (311)
318 PRK07667 uridine kinase; Provi 95.3 0.022 4.9E-07 56.9 4.8 38 186-227 3-40 (193)
319 PTZ00035 Rad51 protein; Provis 95.2 0.1 2.3E-06 56.8 10.1 57 203-260 117-177 (337)
320 cd03222 ABC_RNaseL_inhibitor T 95.2 0.095 2.1E-06 51.3 8.9 102 205-327 26-136 (177)
321 KOG2739 Leucine-rich acidic nu 95.2 0.0069 1.5E-07 60.9 0.9 84 609-696 39-127 (260)
322 COG2884 FtsE Predicted ATPase 95.2 0.19 4.1E-06 48.2 10.3 123 205-330 29-204 (223)
323 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.14 3E-06 53.1 10.5 48 203-254 20-67 (237)
324 PRK00771 signal recognition pa 95.2 0.16 3.5E-06 57.1 11.6 57 202-260 93-150 (437)
325 PF00154 RecA: recA bacterial 95.2 0.037 8.1E-07 58.9 6.2 84 203-293 52-141 (322)
326 PTZ00301 uridine kinase; Provi 95.2 0.028 6E-07 56.6 5.0 23 204-226 3-25 (210)
327 COG1136 SalX ABC-type antimicr 95.1 0.16 3.5E-06 51.1 10.3 61 270-330 147-210 (226)
328 cd03238 ABC_UvrA The excision 95.1 0.088 1.9E-06 51.4 8.2 121 205-337 22-161 (176)
329 cd03230 ABC_DR_subfamily_A Thi 95.1 0.14 3E-06 50.2 9.7 117 205-327 27-159 (173)
330 PTZ00494 tuzin-like protein; P 95.1 0.36 7.8E-06 52.6 13.1 170 172-353 366-544 (664)
331 PRK14974 cell division protein 95.1 0.16 3.5E-06 54.9 10.9 89 203-294 139-233 (336)
332 cd01125 repA Hexameric Replica 95.0 0.14 3.1E-06 53.1 10.2 21 206-226 3-23 (239)
333 PRK00889 adenylylsulfate kinas 95.0 0.13 2.7E-06 50.6 9.3 24 204-227 4-27 (175)
334 TIGR00064 ftsY signal recognit 95.0 0.13 2.8E-06 54.3 9.8 89 202-293 70-164 (272)
335 cd01122 GP4d_helicase GP4d_hel 95.0 0.2 4.3E-06 53.3 11.4 52 205-259 31-82 (271)
336 TIGR02236 recomb_radA DNA repa 95.0 0.085 1.8E-06 57.3 8.6 57 203-260 94-154 (310)
337 TIGR01425 SRP54_euk signal rec 95.0 0.17 3.7E-06 56.3 10.9 26 202-227 98-123 (429)
338 PRK05022 anaerobic nitric oxid 95.0 0.068 1.5E-06 62.2 8.3 134 176-323 186-332 (509)
339 PF01583 APS_kinase: Adenylyls 95.0 0.035 7.5E-07 52.5 4.7 35 205-241 3-37 (156)
340 KOG1532 GTPase XAB1, interacts 94.9 0.098 2.1E-06 52.7 7.9 87 201-287 16-120 (366)
341 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.28 6.1E-06 50.2 11.4 118 205-324 31-200 (254)
342 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.9E-07 35.0 1.1 22 591-612 1-22 (22)
343 PRK12726 flagellar biosynthesi 94.9 0.12 2.5E-06 56.1 9.0 90 202-293 204-295 (407)
344 PRK07132 DNA polymerase III su 94.9 0.43 9.3E-06 50.9 13.3 156 204-385 18-184 (299)
345 cd03216 ABC_Carb_Monos_I This 94.9 0.066 1.4E-06 51.8 6.7 114 206-326 28-145 (163)
346 PRK12723 flagellar biosynthesi 94.9 0.18 4E-06 55.7 10.8 89 203-294 173-265 (388)
347 PRK06731 flhF flagellar biosyn 94.8 0.19 4E-06 52.7 10.1 88 205-294 76-165 (270)
348 PLN00020 ribulose bisphosphate 94.8 0.066 1.4E-06 57.4 6.7 26 202-227 146-171 (413)
349 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.081 1.8E-06 53.7 7.1 121 204-329 29-160 (213)
350 cd03246 ABCC_Protease_Secretio 94.7 0.11 2.3E-06 51.0 7.8 115 206-327 30-160 (173)
351 PF13238 AAA_18: AAA domain; P 94.7 0.021 4.6E-07 52.7 2.7 21 207-227 1-21 (129)
352 PF03215 Rad17: Rad17 cell cyc 94.7 0.17 3.6E-06 58.3 10.3 61 176-241 18-78 (519)
353 cd02019 NK Nucleoside/nucleoti 94.6 0.023 5E-07 45.8 2.4 22 206-227 1-22 (69)
354 COG1066 Sms Predicted ATP-depe 94.6 0.16 3.4E-06 54.8 9.1 82 204-294 93-179 (456)
355 cd02027 APSK Adenosine 5'-phos 94.6 0.08 1.7E-06 50.3 6.4 22 206-227 1-22 (149)
356 PRK05480 uridine/cytidine kina 94.6 0.028 6.2E-07 57.1 3.5 25 203-227 5-29 (209)
357 TIGR00390 hslU ATP-dependent p 94.6 0.1 2.2E-06 57.3 7.8 81 177-259 12-104 (441)
358 PRK04328 hypothetical protein; 94.6 0.11 2.4E-06 54.3 7.9 42 203-246 22-63 (249)
359 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.14 3E-06 53.8 8.6 40 203-244 35-74 (259)
360 PRK06547 hypothetical protein; 94.5 0.049 1.1E-06 53.0 4.7 26 202-227 13-38 (172)
361 PF00006 ATP-synt_ab: ATP synt 94.5 0.096 2.1E-06 52.8 6.8 83 206-292 17-114 (215)
362 PTZ00088 adenylate kinase 1; P 94.4 0.037 8E-07 56.6 3.9 22 206-227 8-29 (229)
363 COG4088 Predicted nucleotide k 94.4 0.14 3E-06 49.6 7.2 22 206-227 3-24 (261)
364 cd02028 UMPK_like Uridine mono 94.4 0.076 1.7E-06 52.2 5.9 22 206-227 1-22 (179)
365 PF12061 DUF3542: Protein of u 94.4 0.079 1.7E-06 54.3 5.8 76 5-84 297-373 (402)
366 PRK05201 hslU ATP-dependent pr 94.3 0.11 2.3E-06 57.2 7.2 81 177-259 15-107 (443)
367 TIGR00235 udk uridine kinase. 94.3 0.035 7.5E-07 56.3 3.4 25 203-227 5-29 (207)
368 cd01121 Sms Sms (bacterial rad 94.3 0.15 3.2E-06 56.2 8.4 82 203-292 81-167 (372)
369 TIGR01069 mutS2 MutS2 family p 94.3 0.069 1.5E-06 64.8 6.3 188 203-405 321-519 (771)
370 PRK03846 adenylylsulfate kinas 94.3 0.11 2.3E-06 52.3 6.7 24 203-226 23-46 (198)
371 PF08433 KTI12: Chromatin asso 94.3 0.078 1.7E-06 55.6 5.9 22 206-227 3-24 (270)
372 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.056 1.2E-06 57.7 4.7 51 176-226 60-110 (358)
373 KOG0733 Nuclear AAA ATPase (VC 94.2 0.84 1.8E-05 51.7 13.8 98 177-294 190-293 (802)
374 PRK06217 hypothetical protein; 94.2 0.13 2.9E-06 50.9 7.2 23 206-228 3-25 (183)
375 PF12775 AAA_7: P-loop contain 94.2 0.034 7.5E-07 58.6 3.2 96 187-301 23-118 (272)
376 COG0396 sufC Cysteine desulfur 94.2 0.44 9.6E-06 47.4 10.4 66 270-335 149-216 (251)
377 cd03229 ABC_Class3 This class 94.2 0.11 2.4E-06 51.2 6.5 23 205-227 27-49 (178)
378 PF07726 AAA_3: ATPase family 94.2 0.027 5.8E-07 50.7 1.9 27 207-235 2-28 (131)
379 PRK06762 hypothetical protein; 94.1 0.038 8.3E-07 53.8 3.2 23 205-227 3-25 (166)
380 COG0464 SpoVK ATPases of the A 94.1 0.41 9E-06 55.8 12.3 133 202-354 274-424 (494)
381 PRK06002 fliI flagellum-specif 94.1 0.21 4.6E-06 55.7 9.2 86 205-293 166-264 (450)
382 COG0563 Adk Adenylate kinase a 94.1 0.073 1.6E-06 52.0 5.0 22 206-227 2-23 (178)
383 KOG3347 Predicted nucleotide k 94.1 0.064 1.4E-06 49.0 4.1 72 204-285 7-78 (176)
384 TIGR00150 HI0065_YjeE ATPase, 94.1 0.075 1.6E-06 48.8 4.7 41 184-228 6-46 (133)
385 PRK05986 cob(I)alamin adenolsy 94.1 0.28 6.1E-06 47.9 8.8 118 204-323 22-158 (191)
386 COG1428 Deoxynucleoside kinase 94.0 0.038 8.2E-07 54.1 2.8 26 204-229 4-29 (216)
387 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.52 1.1E-05 47.7 11.3 23 205-227 35-57 (207)
388 PRK09280 F0F1 ATP synthase sub 94.0 0.21 4.5E-06 56.1 8.8 86 206-292 146-247 (463)
389 PRK10820 DNA-binding transcrip 94.0 0.13 2.7E-06 60.1 7.6 134 177-323 204-349 (520)
390 KOG0730 AAA+-type ATPase [Post 94.0 0.53 1.2E-05 53.9 12.0 56 177-234 434-496 (693)
391 cd03282 ABC_MSH4_euk MutS4 hom 94.0 0.13 2.7E-06 51.8 6.6 121 204-331 29-159 (204)
392 KOG0731 AAA+-type ATPase conta 94.0 0.71 1.5E-05 54.5 13.4 183 177-383 311-521 (774)
393 PRK09519 recA DNA recombinatio 94.0 0.15 3.2E-06 61.0 8.0 84 203-293 59-148 (790)
394 PRK03839 putative kinase; Prov 93.9 0.041 8.8E-07 54.4 2.8 22 206-227 2-23 (180)
395 PRK10733 hflB ATP-dependent me 93.9 0.38 8.3E-06 57.5 11.4 157 178-354 153-336 (644)
396 PRK14723 flhF flagellar biosyn 93.8 0.41 8.9E-06 57.1 11.3 86 204-292 185-272 (767)
397 cd03244 ABCC_MRP_domain2 Domai 93.8 0.46 1E-05 48.7 10.6 23 205-227 31-53 (221)
398 PRK06995 flhF flagellar biosyn 93.8 0.42 9.2E-06 54.2 10.8 88 204-293 256-344 (484)
399 PRK14721 flhF flagellar biosyn 93.8 0.31 6.8E-06 54.3 9.7 25 203-227 190-214 (420)
400 PF03308 ArgK: ArgK protein; 93.8 0.12 2.6E-06 52.6 5.8 60 185-248 14-73 (266)
401 TIGR03498 FliI_clade3 flagella 93.7 0.21 4.7E-06 55.6 8.4 85 205-293 141-240 (418)
402 KOG0728 26S proteasome regulat 93.7 2.4 5.2E-05 42.4 14.4 190 178-389 147-366 (404)
403 COG0467 RAD55 RecA-superfamily 93.7 0.14 3E-06 54.0 6.6 42 202-245 21-62 (260)
404 PRK05917 DNA polymerase III su 93.7 1.1 2.3E-05 47.3 13.0 59 282-340 94-154 (290)
405 PF13481 AAA_25: AAA domain; P 93.7 0.32 7E-06 48.5 9.1 41 206-246 34-82 (193)
406 PRK15453 phosphoribulokinase; 93.7 0.36 7.9E-06 50.2 9.3 78 203-282 4-89 (290)
407 PF00910 RNA_helicase: RNA hel 93.7 0.037 7.9E-07 49.2 1.9 21 207-227 1-21 (107)
408 PRK08972 fliI flagellum-specif 93.7 0.22 4.8E-06 55.4 8.2 85 205-293 163-262 (444)
409 PRK00625 shikimate kinase; Pro 93.6 0.047 1E-06 53.2 2.7 22 206-227 2-23 (173)
410 PRK08533 flagellar accessory p 93.6 0.31 6.8E-06 50.1 8.9 48 204-255 24-71 (230)
411 TIGR03881 KaiC_arch_4 KaiC dom 93.6 0.26 5.6E-06 50.9 8.4 41 203-245 19-59 (229)
412 KOG3864 Uncharacterized conser 93.6 0.008 1.7E-07 57.9 -2.6 68 864-935 123-191 (221)
413 KOG0473 Leucine-rich repeat pr 93.6 0.003 6.5E-08 61.7 -5.5 84 586-671 38-121 (326)
414 TIGR01360 aden_kin_iso1 adenyl 93.6 0.057 1.2E-06 53.8 3.4 24 203-226 2-25 (188)
415 TIGR02858 spore_III_AA stage I 93.6 0.33 7.1E-06 51.0 9.0 129 185-328 97-234 (270)
416 KOG0739 AAA+-type ATPase [Post 93.6 1.7 3.6E-05 44.8 13.4 97 177-294 133-236 (439)
417 cd00984 DnaB_C DnaB helicase C 93.6 0.4 8.7E-06 49.9 9.9 52 204-258 13-64 (242)
418 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.15 3.3E-06 49.0 6.1 116 205-328 26-145 (157)
419 TIGR03575 selen_PSTK_euk L-ser 93.5 0.2 4.3E-06 54.1 7.5 22 207-228 2-23 (340)
420 cd02029 PRK_like Phosphoribulo 93.5 0.17 3.6E-06 52.2 6.4 77 206-284 1-85 (277)
421 PRK04040 adenylate kinase; Pro 93.5 0.058 1.3E-06 53.5 3.1 23 205-227 3-25 (188)
422 PRK07594 type III secretion sy 93.5 0.28 6.1E-06 54.7 8.7 85 205-293 156-255 (433)
423 COG4618 ArpD ABC-type protease 93.5 0.69 1.5E-05 51.4 11.3 21 206-226 364-384 (580)
424 COG2842 Uncharacterized ATPase 93.5 1.5 3.2E-05 45.6 13.2 121 176-309 71-191 (297)
425 COG3640 CooC CO dehydrogenase 93.5 0.11 2.4E-06 51.6 4.9 42 206-248 2-43 (255)
426 cd03215 ABC_Carb_Monos_II This 93.4 0.59 1.3E-05 46.2 10.2 23 205-227 27-49 (182)
427 PF13479 AAA_24: AAA domain 93.4 0.25 5.5E-06 50.2 7.7 20 205-224 4-23 (213)
428 cd03233 ABC_PDR_domain1 The pl 93.4 0.64 1.4E-05 46.8 10.6 23 205-227 34-56 (202)
429 cd03213 ABCG_EPDR ABCG transpo 93.4 0.54 1.2E-05 47.0 10.0 23 205-227 36-58 (194)
430 PF06745 KaiC: KaiC; InterPro 93.4 0.17 3.6E-06 52.1 6.5 86 203-292 18-124 (226)
431 cd03283 ABC_MutS-like MutS-lik 93.4 0.42 9.2E-06 47.9 9.1 23 205-227 26-48 (199)
432 PRK10875 recD exonuclease V su 93.3 0.46 9.9E-06 56.0 10.6 114 205-323 168-302 (615)
433 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.37 8.1E-06 48.4 8.7 23 205-227 27-49 (200)
434 cd02024 NRK1 Nicotinamide ribo 93.3 0.051 1.1E-06 53.5 2.3 22 206-227 1-22 (187)
435 cd02023 UMPK Uridine monophosp 93.3 0.051 1.1E-06 54.7 2.4 21 206-226 1-21 (198)
436 TIGR02329 propionate_PrpR prop 93.3 0.18 3.9E-06 58.3 7.1 47 177-227 212-258 (526)
437 PRK12597 F0F1 ATP synthase sub 93.3 0.25 5.4E-06 55.6 7.9 86 206-292 145-246 (461)
438 PRK10751 molybdopterin-guanine 93.2 0.091 2E-06 50.8 3.9 25 203-227 5-29 (173)
439 TIGR03574 selen_PSTK L-seryl-t 93.2 0.22 4.8E-06 52.1 7.2 21 207-227 2-22 (249)
440 PRK05973 replicative DNA helic 93.2 0.37 8.1E-06 49.3 8.4 48 204-255 64-111 (237)
441 COG5635 Predicted NTPase (NACH 93.2 0.13 2.9E-06 63.5 6.3 138 203-346 221-371 (824)
442 PF03205 MobB: Molybdopterin g 93.2 0.11 2.3E-06 48.7 4.2 39 205-244 1-39 (140)
443 PLN02348 phosphoribulokinase 93.2 0.4 8.6E-06 52.4 9.0 26 202-227 47-72 (395)
444 cd01135 V_A-ATPase_B V/A-type 93.1 0.38 8.3E-06 50.0 8.4 88 206-293 71-176 (276)
445 PF06309 Torsin: Torsin; Inte 93.1 0.16 3.6E-06 45.6 5.0 50 178-227 26-76 (127)
446 cd03245 ABCC_bacteriocin_expor 93.1 0.68 1.5E-05 47.4 10.5 23 205-227 31-53 (220)
447 COG2019 AdkA Archaeal adenylat 93.1 0.086 1.9E-06 49.3 3.2 23 204-226 4-26 (189)
448 TIGR02322 phosphon_PhnN phosph 93.0 0.069 1.5E-06 52.7 2.9 22 206-227 3-24 (179)
449 cd03253 ABCC_ATM1_transporter 93.0 0.6 1.3E-05 48.4 10.1 23 205-227 28-50 (236)
450 KOG0736 Peroxisome assembly fa 93.0 1.5 3.2E-05 51.3 13.4 53 179-233 403-458 (953)
451 PRK07276 DNA polymerase III su 93.0 2.7 6E-05 44.5 14.8 69 282-351 103-173 (290)
452 cd03240 ABC_Rad50 The catalyti 93.0 0.56 1.2E-05 47.3 9.4 60 276-337 132-195 (204)
453 PRK00131 aroK shikimate kinase 93.0 0.073 1.6E-06 52.2 3.0 24 204-227 4-27 (175)
454 COG1703 ArgK Putative periplas 93.0 0.14 3E-06 52.9 4.9 64 187-254 38-101 (323)
455 TIGR01359 UMP_CMP_kin_fam UMP- 93.0 0.059 1.3E-06 53.4 2.3 21 206-226 1-21 (183)
456 cd03232 ABC_PDR_domain2 The pl 93.0 0.52 1.1E-05 47.0 9.2 22 205-226 34-55 (192)
457 smart00534 MUTSac ATPase domai 93.0 0.12 2.5E-06 51.4 4.4 119 206-330 1-129 (185)
458 PF01078 Mg_chelatase: Magnesi 93.0 0.17 3.6E-06 50.1 5.3 42 177-226 3-44 (206)
459 PRK10463 hydrogenase nickel in 92.9 0.39 8.5E-06 50.4 8.2 26 202-227 102-127 (290)
460 PRK08149 ATP synthase SpaL; Va 92.8 0.27 5.8E-06 54.8 7.3 85 205-293 152-251 (428)
461 COG0714 MoxR-like ATPases [Gen 92.8 0.22 4.9E-06 54.5 6.8 64 178-254 25-88 (329)
462 COG0003 ArsA Predicted ATPase 92.8 0.18 3.8E-06 54.1 5.7 48 204-253 2-49 (322)
463 PRK08927 fliI flagellum-specif 92.8 0.48 1E-05 53.0 9.2 85 205-293 159-258 (442)
464 PRK12678 transcription termina 92.8 0.16 3.5E-06 57.5 5.5 96 188-292 405-512 (672)
465 TIGR02655 circ_KaiC circadian 92.8 0.65 1.4E-05 53.7 10.8 48 203-254 262-309 (484)
466 TIGR03305 alt_F1F0_F1_bet alte 92.7 0.37 8E-06 53.9 8.1 87 206-293 140-242 (449)
467 TIGR01420 pilT_fam pilus retra 92.7 0.43 9.4E-06 52.4 8.7 111 205-326 123-233 (343)
468 PRK13947 shikimate kinase; Pro 92.7 0.077 1.7E-06 51.9 2.6 22 206-227 3-24 (171)
469 cd02021 GntK Gluconate kinase 92.6 0.075 1.6E-06 50.7 2.4 22 206-227 1-22 (150)
470 cd01136 ATPase_flagellum-secre 92.6 0.52 1.1E-05 50.7 8.9 84 205-292 70-168 (326)
471 KOG0729 26S proteasome regulat 92.6 0.81 1.8E-05 46.0 9.5 96 177-293 177-280 (435)
472 PRK11823 DNA repair protein Ra 92.6 0.43 9.3E-06 54.3 8.8 82 203-292 79-165 (446)
473 PRK00279 adk adenylate kinase; 92.6 0.31 6.7E-06 49.7 7.0 21 206-226 2-22 (215)
474 TIGR00764 lon_rel lon-related 92.6 0.3 6.5E-06 57.8 7.7 75 176-261 17-92 (608)
475 cd00227 CPT Chloramphenicol (C 92.5 0.085 1.8E-06 51.8 2.7 23 205-227 3-25 (175)
476 cd03250 ABCC_MRP_domain1 Domai 92.5 1.3 2.8E-05 44.6 11.5 23 205-227 32-54 (204)
477 TIGR03263 guanyl_kin guanylate 92.5 0.092 2E-06 51.9 3.0 22 205-226 2-23 (180)
478 COG1124 DppF ABC-type dipeptid 92.5 0.096 2.1E-06 52.4 3.0 21 206-226 35-55 (252)
479 PF03193 DUF258: Protein of un 92.5 0.16 3.4E-06 48.4 4.3 36 184-228 24-59 (161)
480 PRK10416 signal recognition pa 92.5 0.75 1.6E-05 49.7 10.1 26 203-228 113-138 (318)
481 PRK05922 type III secretion sy 92.5 0.63 1.4E-05 51.9 9.6 84 206-293 159-257 (434)
482 PRK13949 shikimate kinase; Pro 92.5 0.086 1.9E-06 51.3 2.6 22 206-227 3-24 (169)
483 cd02020 CMPK Cytidine monophos 92.5 0.078 1.7E-06 50.3 2.3 22 206-227 1-22 (147)
484 TIGR01447 recD exodeoxyribonuc 92.5 0.54 1.2E-05 55.3 9.6 115 205-322 161-295 (586)
485 COG0529 CysC Adenylylsulfate k 92.4 0.12 2.6E-06 48.9 3.4 25 203-227 22-46 (197)
486 TIGR03522 GldA_ABC_ATP gliding 92.4 0.84 1.8E-05 49.3 10.5 23 205-227 29-51 (301)
487 COG1936 Predicted nucleotide k 92.4 0.098 2.1E-06 49.4 2.7 20 206-225 2-21 (180)
488 COG4240 Predicted kinase [Gene 92.4 0.52 1.1E-05 46.5 7.6 84 201-285 47-135 (300)
489 PRK15424 propionate catabolism 92.4 0.3 6.5E-06 56.5 7.3 47 177-227 219-265 (538)
490 PF08477 Miro: Miro-like prote 92.4 0.096 2.1E-06 47.5 2.7 22 207-228 2-23 (119)
491 PRK15115 response regulator Gl 92.4 0.33 7.1E-06 55.9 7.7 46 178-227 135-180 (444)
492 cd01132 F1_ATPase_alpha F1 ATP 92.4 0.54 1.2E-05 48.9 8.3 84 206-293 71-171 (274)
493 PRK11388 DNA-binding transcrip 92.3 0.32 6.9E-06 58.7 7.8 131 177-322 325-466 (638)
494 cd01428 ADK Adenylate kinase ( 92.3 0.37 8.1E-06 48.1 7.2 21 207-227 2-22 (194)
495 PTZ00185 ATPase alpha subunit; 92.3 0.63 1.4E-05 52.3 9.2 88 206-293 191-299 (574)
496 PRK13765 ATP-dependent proteas 92.2 0.24 5.1E-06 58.5 6.2 75 176-260 30-104 (637)
497 PRK06936 type III secretion sy 92.2 0.62 1.4E-05 52.0 9.2 85 205-293 163-262 (439)
498 cd00544 CobU Adenosylcobinamid 92.2 0.58 1.3E-05 45.4 7.9 79 207-292 2-82 (169)
499 TIGR00455 apsK adenylylsulfate 92.2 0.7 1.5E-05 45.8 8.8 25 203-227 17-41 (184)
500 PF13245 AAA_19: Part of AAA d 92.2 0.28 6.1E-06 40.2 4.9 22 205-226 11-33 (76)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-95 Score=855.40 Aligned_cols=777 Identities=27% Similarity=0.401 Sum_probs=582.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHhhcchhhhh
Q 002187 3 DAIISPLLEQLTSMTVEEAKEQVRLVTGVGKEAKKLTSNLRAIQAVLHDAEKRQVKEETVRLWLDQLRHACYDMEDVLGE 82 (955)
Q Consensus 3 ~~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~ 82 (955)
++.++..++|+.+ .+.+++..+.+.++.+..|+++|..++++++||++++.....+..|...+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888 788889999999999999999999999999999999888889999999999999999999999
Q ss_pred hHHHHHhhhccCCCCCcccccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHhhhhcCccccccccc-
Q 002187 83 WNTARLKLQIDGVDDHENDALVPKKKVCSFFPAASCFACKPIVLRRDIALKIKEINETLDDIAKQKDMFGFAVNVIKSN- 161 (955)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~- 161 (955)
|.......+..+ ....+....+. .|+| .++++.+..+..+.+++..+.+....++.........
T Consensus 78 ~~v~~~~~~~~~-------~l~~~~~~~~~----~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~ 142 (889)
T KOG4658|consen 78 FLVEEIERKAND-------LLSTRSVERQR----LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGE 142 (889)
T ss_pred HHHHHHHHHHhH-------HhhhhHHHHHH----Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccc
Confidence 988876543321 00000001111 1111 4556667777777777777777766665443211111
Q ss_pred -cccCCCCCccccCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchh-hhccCCceEE
Q 002187 162 -ERADQRVPSISSIDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVD-VKKKFEKRMW 239 (955)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~w 239 (955)
......+++.+..+... ||.++.++++.+.|..++ ..+++|+||||+||||||+.++|+.. ++.+|+.++|
T Consensus 143 ~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iW 215 (889)
T KOG4658|consen 143 SLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIW 215 (889)
T ss_pred cccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEE
Confidence 11111233334444445 999999999999998653 37999999999999999999999988 9999999999
Q ss_pred EEeCCcccHHHHHHHHHHHHcCCCCCCC--ChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 240 ICVSELFDEFRIARAIIEALTGSASNFG--EFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 240 v~vs~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
|+||+.++...++.+|++.++....... +.++++..|.+.|++|||+|||||||+. .+|+.+..++|...+||||+
T Consensus 216 V~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kvv 293 (889)
T KOG4658|consen 216 VVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVV 293 (889)
T ss_pred EEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEE
Confidence 9999999999999999999987543333 3468999999999999999999999986 56999999999999999999
Q ss_pred EecCChhHHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCH
Q 002187 318 ITTRKETVACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTE 396 (955)
Q Consensus 318 vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 396 (955)
+|||++.|+.. +++...+++++|+++|||+||++.+|.... ...+.++++|++|+++|+|+|||++++|++|+.|.+.
T Consensus 294 lTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~ 372 (889)
T KOG4658|consen 294 LTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTV 372 (889)
T ss_pred EEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcH
Confidence 99999999988 888899999999999999999999987643 3345599999999999999999999999999999999
Q ss_pred HHHHHHHhhhchh----hhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccC-CCCcH
Q 002187 397 KEWQNILESEIWE----IEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEK-GPKEM 471 (955)
Q Consensus 397 ~~w~~~~~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~-~~~~~ 471 (955)
++|+++.+...+. .+++++.++++|++||+.||+++|.||+|||+||+||.|+++.||.+||||||+.+. ++.++
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 9999999876544 334567899999999999999999999999999999999999999999999999984 46889
Q ss_pred HHHHHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhcc-----ccceEeecc-ccccccccccccCceEEEE
Q 002187 472 EDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLCM-----NECFALEIH-SAENSFMRSFREKKVFHLM 545 (955)
Q Consensus 472 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~-----~e~~~~~~~-~~~~~~~~~~~~~~~r~l~ 545 (955)
+++|+.|+.+|++++|++..... ++..+|+|||+|||+|.++|+ +++.+.... +....+....+ ..+|+++
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~s 529 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRMS 529 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEEE
Confidence 99999999999999999886543 667899999999999999999 565555433 33333322233 6899999
Q ss_pred EEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCC-cccccccccCCCCcceEEeecCC
Q 002187 546 LTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSV-IIEIPTNIEKLLHLKYLNLSCQM 624 (955)
Q Consensus 546 l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~L~~Lr~L~L~~~~ 624 (955)
+.++.+..++... .+++|++|.+..+.. ........+|..++.||||||++|. +.++|++|++|.|||||+|+++.
T Consensus 530 ~~~~~~~~~~~~~--~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 530 LMNNKIEHIAGSS--ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred EeccchhhccCCC--CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence 9999877555544 577999999998753 2333345568999999999999876 78999999999999999999999
Q ss_pred CccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccC
Q 002187 625 EIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACS 704 (955)
Q Consensus 625 ~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~ 704 (955)
+..||..+++|+.|++||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.+.... ...
T Consensus 607 -I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s--~~~ 682 (889)
T KOG4658|consen 607 -ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS--VLL 682 (889)
T ss_pred -ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch--hHh
Confidence 99999999999999999999998777777767779999999997653 11112234555666666655554332 112
Q ss_pred ccccccCCCCCCceEeCC-CCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCC
Q 002187 705 LGSLKKLNLLRQCRIRGL-GDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNL 783 (955)
Q Consensus 705 l~~L~~L~~L~~l~i~~~-~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 783 (955)
+..+..+..|+.+.+.-. .. .........+..+.+|++|.+..+.+.+.... .. .... .+..++++
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~------~~--~~~~---~~~~f~~l 749 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIE------WE--ESLI---VLLCFPNL 749 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcc------cc--cccc---hhhhHHHH
Confidence 233333333332111000 00 11122234455666777777766643221100 00 0000 00023455
Q ss_pred CeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcC-CCCCCCCCcce
Q 002187 784 KELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHL-PPLGKLPSLED 834 (955)
Q Consensus 784 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~ 834 (955)
..+.+.++.... . +.|....++|+.|.+..|...+.+ |....+..++.
T Consensus 750 ~~~~~~~~~~~r--~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 750 SKVSILNCHMLR--D-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHHhhcccccc--c-cchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 555555555555 3 556656667777777766555432 33444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-65 Score=638.92 Aligned_cols=676 Identities=21% Similarity=0.286 Sum_probs=465.6
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe---CCc-----
Q 002187 174 IDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICV---SEL----- 245 (955)
Q Consensus 174 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----- 245 (955)
.+...+|||++.++++..+|... .++.++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34568999999999999988543 24789999999999999999999999 67889998888742 111
Q ss_pred ------cc-HHHHHHHHHHHHcCCCC-CCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 246 ------FD-EFRIARAIIEALTGSAS-NFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 246 ------~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
++ ...++.+++.++..... .... ...+++.+++||+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344555555433211 1111 24577889999999999999864 56888877666667899999
Q ss_pred EecCChhHHHhhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHH
Q 002187 318 ITTRKETVACIMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEK 397 (955)
Q Consensus 318 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~ 397 (955)
||||++.++..++...+|+++.|++++||+||+++||+... +++++.+++++|+++|+|+|||++++|++|+.+ +.+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 99999999988777889999999999999999999997542 356788999999999999999999999999986 689
Q ss_pred HHHHHHhhhchhhhhhhcchhhHHHHhhhcCCH-hHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHHHH
Q 002187 398 EWQNILESEIWEIEEVEKGLLAPLLLSYNELPP-KIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDIGE 476 (955)
Q Consensus 398 ~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~ 476 (955)
+|+.++++.... .+..|.++|++||++|++ ..|.||+++|+||.++.++ .+..|+|.+.... +
T Consensus 406 ~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~ 469 (1153)
T PLN03210 406 DWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------N 469 (1153)
T ss_pred HHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------h
Confidence 999999875432 234699999999999987 5999999999999987653 4778888876542 1
Q ss_pred HHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhccccc-------eEeeccccccccccccccCceEEEEEEcc
Q 002187 477 EYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLCMNEC-------FALEIHSAENSFMRSFREKKVFHLMLTLH 549 (955)
Q Consensus 477 ~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~r~l~l~~~ 549 (955)
.-++.|+++||++... + .++|||++|+|++.+++++. +.+................+++++++...
T Consensus 470 ~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred hChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 2388999999997642 2 48999999999999987653 22221111111111112256777777655
Q ss_pred CCCC--cchhhhccCCCceEEEecCCCch---hhHHHHHHHhc-----------------------CCCcccEEEcCCCC
Q 002187 550 RGAS--VPISIWDNVKGLRSLLVKSDEYS---WSIEVLRQLFD-----------------------KLTCLRTLKLDGSV 601 (955)
Q Consensus 550 ~~~~--~~~~~~~~~~~Lr~L~l~~~~~~---~~~~~l~~~~~-----------------------~l~~Lr~L~L~~~~ 601 (955)
.... +....+..+++|+.|.+..+... ...-.++..|. .+.+|+.|+|.++.
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK 622 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc
Confidence 4432 33344557888888877543210 00000111111 23466666666666
Q ss_pred cccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCC
Q 002187 602 IIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGI 681 (955)
Q Consensus 602 ~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 681 (955)
+..+|..+..+++|++|+|+++..++.+|. ++.+++|++|+|++|..+..+|..+.++++|++|++++|..++.+|..+
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 666666666666777777766655666664 6666677777776666666666666666777777776666666666655
Q ss_pred CCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCccccc
Q 002187 682 GELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAG 761 (955)
Q Consensus 682 ~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~ 761 (955)
++++|+.|.+..+.... .+.. ...+|+.|.+.+.. +.. ... ...+++|..|.+..+.......
T Consensus 702 -~l~sL~~L~Lsgc~~L~----~~p~--~~~nL~~L~L~~n~-i~~----lP~-~~~l~~L~~L~l~~~~~~~l~~---- 764 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLK----SFPD--ISTNISWLDLDETA-IEE----FPS-NLRLENLDELILCEMKSEKLWE---- 764 (1153)
T ss_pred -CCCCCCEEeCCCCCCcc----cccc--ccCCcCeeecCCCc-ccc----ccc-cccccccccccccccchhhccc----
Confidence 56666666554433211 0100 01223333333211 000 000 1134556666555431100000
Q ss_pred CCCCchhhHHHH-hhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCC
Q 002187 762 RRENEEDEDERL-LEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGM 840 (955)
Q Consensus 762 ~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 840 (955)
..... ......+++|+.|++++|..... + |.+++++++|+.|+|++|..++.+|....+++|+.|+|++|
T Consensus 765 -------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 765 -------RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-L-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred -------cccccchhhhhccccchheeCCCCCCccc-c-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 00000 00122357899999999875542 4 88899999999999999988999998778999999999999
Q ss_pred CCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCC
Q 002187 841 GSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKT 920 (955)
Q Consensus 841 ~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~ 920 (955)
..+..++. ..++|+.|++.++ .++. .|..+..+++|+.|++.+|++++.+|..+..++
T Consensus 836 ~~L~~~p~---------------~~~nL~~L~Ls~n-~i~~------iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 836 SRLRTFPD---------------ISTNISDLNLSRT-GIEE------VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred Cccccccc---------------cccccCEeECCCC-CCcc------ChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 87654332 2467899998875 4443 344678899999999999999999999888999
Q ss_pred CcCeEEEecCCCcccc
Q 002187 921 TLQRLSIFSCPILKKT 936 (955)
Q Consensus 921 ~L~~L~l~~c~~l~~~ 936 (955)
+|+.+++++|++|...
T Consensus 894 ~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 894 HLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCeeecCCCcccccc
Confidence 9999999999998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.5e-45 Score=394.95 Aligned_cols=279 Identities=36% Similarity=0.606 Sum_probs=227.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC
Q 002187 182 REKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG 261 (955)
Q Consensus 182 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 261 (955)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 488999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHhhcC-cceEeC
Q 002187 262 SAS---NFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACIMGS-TNIISI 337 (955)
Q Consensus 262 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l 337 (955)
... ...+.+.....+++.|+++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 643 4567788999999999999999999999975 4788888888888889999999999999877665 779999
Q ss_pred CCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHHHhhhchhhh---hhh
Q 002187 338 NVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNILESEIWEIE---EVE 414 (955)
Q Consensus 338 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~ 414 (955)
++|+.+||++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|..++++..+... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 22345556789999999999999999999999776677889998877554442 234
Q ss_pred cchhhHHHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCC
Q 002187 415 KGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKG 467 (955)
Q Consensus 415 ~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~ 467 (955)
..+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+|||||+..+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC---
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcccC
Confidence 66999999999999999999999999999999999999999999999998653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=6.4e-24 Score=268.41 Aligned_cols=361 Identities=20% Similarity=0.209 Sum_probs=219.0
Q ss_pred CceEEEEEEccCCC-CcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcc-cccccccCCCCcc
Q 002187 539 KKVFHLMLTLHRGA-SVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVII-EIPTNIEKLLHLK 616 (955)
Q Consensus 539 ~~~r~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~L~~Lr 616 (955)
..++.+.+..+.+. .+|...+..+++|+.|++.++..... .+ ...+++|++|+|++|.+. .+|..++++.+|+
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~---~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS---IP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc---cC--ccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 35566666655543 35555554666666666666543211 11 235666777777777664 4666777777777
Q ss_pred eEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEec
Q 002187 617 YLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVG 696 (955)
Q Consensus 617 ~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 696 (955)
+|+|++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..++++++|++|++..+.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 77777776334677777777777777777776555677777777777777777775555677777777777777776554
Q ss_pred CccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhh
Q 002187 697 GGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEA 776 (955)
Q Consensus 697 ~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 776 (955)
.....+ ..+..+++|+.|.+.+..- .......+..+++|+.|++++|.+.+. .+..
T Consensus 248 l~~~~p---~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~ 303 (968)
T PLN00113 248 LTGPIP---SSLGNLKNLQYLFLYQNKL----SGPIPPSIFSLQKLISLDLSDNSLSGE-----------------IPEL 303 (968)
T ss_pred eccccC---hhHhCCCCCCEEECcCCee----eccCchhHhhccCcCEEECcCCeeccC-----------------CChh
Confidence 432122 2334444555544443211 111122345567777777777654321 2334
Q ss_pred CCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCcc
Q 002187 777 LGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVER 855 (955)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 855 (955)
+..+++|+.|++++|.... ..|.++..+++|+.|+|++|.....+|. ++.+++|+.|++++|.--..++..+.....
T Consensus 304 ~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred HcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 5567788888888777655 3377777788888888888755545554 677788888888766522122221111000
Q ss_pred C------------CCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcC
Q 002187 856 D------------TDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQ 923 (955)
Q Consensus 856 ~------------~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~ 923 (955)
. ........+++|+.|.+.+|. + .+..|..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l-----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-F-----SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-e-----eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 0 000112356777777777663 2 122344567788888888888875556666677788888
Q ss_pred eEEEecCCCcccc
Q 002187 924 RLSIFSCPILKKT 936 (955)
Q Consensus 924 ~L~l~~c~~l~~~ 936 (955)
.|++++|......
T Consensus 456 ~L~L~~n~~~~~~ 468 (968)
T PLN00113 456 MLSLARNKFFGGL 468 (968)
T ss_pred EEECcCceeeeec
Confidence 8888888654433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=4.4e-23 Score=260.81 Aligned_cols=351 Identities=17% Similarity=0.162 Sum_probs=255.1
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc-ccccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE-IPTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~Lr~ 617 (955)
.+++.+.+..+.+.......+..+++|++|+++++.... .+....+..+++||+|+|++|.+.. +|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 478899998877654333334489999999999886432 2233456799999999999999864 453 57899999
Q ss_pred EEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 618 LNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 618 L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
|+|++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..++++++|+.|++..+..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 99999984448899999999999999999986668999999999999999999977778899999999999999887765
Q ss_pred ccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC
Q 002187 698 GYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEAL 777 (955)
Q Consensus 698 ~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 777 (955)
....+ ..+..+++|+.|.+.+... .......+.++++|+.|.++.|.+.+. .+..+
T Consensus 225 ~~~~p---~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l 280 (968)
T PLN00113 225 SGEIP---YEIGGLTSLNHLDLVYNNL----TGPIPSSLGNLKNLQYLFLYQNKLSGP-----------------IPPSI 280 (968)
T ss_pred CCcCC---hhHhcCCCCCEEECcCcee----ccccChhHhCCCCCCEEECcCCeeecc-----------------CchhH
Confidence 43222 3455666777766654321 112234567889999999998865432 23355
Q ss_pred CCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCccC
Q 002187 778 GPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVERD 856 (955)
Q Consensus 778 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~ 856 (955)
..+++|+.|++++|.... ..|.++..+++|+.|++++|.....+|. ++.+++|+.|++.+|.-...++..
T Consensus 281 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~------- 351 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN------- 351 (968)
T ss_pred hhccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-------
Confidence 667899999999998765 3388999999999999999966556665 889999999999887632122211
Q ss_pred CCCccccCCCccceeeecccccccc-c------------------ccccccccccccCcccceeeeccCcCCCCCCCCCC
Q 002187 857 TDGSSVIAFPKLKELRFWSMKELEE-W------------------DFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLL 917 (955)
Q Consensus 857 ~~~~~~~~fp~L~~L~l~~~~~L~~-~------------------~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~ 917 (955)
...+++|+.|+++++. +.. . ...+..|..+..+++|+.|++.+|.....+|..+.
T Consensus 352 -----l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 352 -----LGKHNNLTVLDLSTNN-LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred -----HhCCCCCcEEECCCCe-eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 1245666666666542 111 0 01122333456677777777777764446677777
Q ss_pred CCCCcCeEEEecCCC
Q 002187 918 QKTTLQRLSIFSCPI 932 (955)
Q Consensus 918 ~l~~L~~L~l~~c~~ 932 (955)
.+++|+.|++++|..
T Consensus 426 ~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 426 KLPLVYFLDISNNNL 440 (968)
T ss_pred cCCCCCEEECcCCcc
Confidence 777777777777653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.6e-25 Score=237.12 Aligned_cols=344 Identities=21% Similarity=0.221 Sum_probs=272.8
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc--ccccccCCCCcc
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE--IPTNIEKLLHLK 616 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~Lr 616 (955)
..++++.+.......+|.... .+.+|..|.+..+.. .. +..-++.++.||.+++..|++.. +|..|-.|..|.
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~-~lqkLEHLs~~HN~L---~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELS-RLQKLEHLSMAHNQL---IS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred hheeEEEechhhhhhChHHHH-HHhhhhhhhhhhhhh---Hh-hhhhhccchhhHHHhhhccccccCCCCchhcccccce
Confidence 467788887777777888887 888888888887763 22 22237889999999999999764 899999999999
Q ss_pred eEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccc-cCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEe
Q 002187 617 YLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGI-GKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 617 ~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (955)
.||||+|+ +.+.|..+...+|+-.|+|++|+ ++.+|..+ .+|+.|-+|++++| .+..+|+.+..|.+||+|.+..+
T Consensus 107 ~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 107 ILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCC
Confidence 99999999 99999999999999999999998 99999874 68999999999988 78999999999999999999877
Q ss_pred cCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh
Q 002187 696 GGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLE 775 (955)
Q Consensus 696 ~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 775 (955)
... .+.+..|+.++.|..|.+.+.. ........++..+.||..++++.|++. .+++
T Consensus 184 PL~---hfQLrQLPsmtsL~vLhms~Tq---RTl~N~Ptsld~l~NL~dvDlS~N~Lp------------------~vPe 239 (1255)
T KOG0444|consen 184 PLN---HFQLRQLPSMTSLSVLHMSNTQ---RTLDNIPTSLDDLHNLRDVDLSENNLP------------------IVPE 239 (1255)
T ss_pred hhh---HHHHhcCccchhhhhhhccccc---chhhcCCCchhhhhhhhhccccccCCC------------------cchH
Confidence 654 3456667777777777665532 122333456777889999999998532 3566
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 776 ALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
.+..+++|+.|+|++|.+.+ + .-......+|+.|+|+.| .++.+|. +..|+.|+.|.+.++. +..- |.
T Consensus 240 cly~l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~Fe-----Gi- 308 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFE-----GI- 308 (1255)
T ss_pred HHhhhhhhheeccCcCceee--e-eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-cccc-----CC-
Confidence 77888999999999999887 5 444556789999999999 8888887 8889999999986544 3221 11
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCCcc
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPILK 934 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 934 (955)
+ ..++.+-+|+.+...++ +|+- .|.+++.|+.|++|.+..|. |..+|+++.-++.|+.|++.++|+|.
T Consensus 309 P----SGIGKL~~Levf~aanN-~LEl------VPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 309 P----SGIGKLIQLEVFHAANN-KLEL------VPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred c----cchhhhhhhHHHHhhcc-cccc------CchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCcc
Confidence 0 11335667777777765 3443 34478899999999999776 88899999999999999999999998
Q ss_pred ccc
Q 002187 935 KTK 937 (955)
Q Consensus 935 ~~~ 937 (955)
..|
T Consensus 377 MPP 379 (1255)
T KOG0444|consen 377 MPP 379 (1255)
T ss_pred CCC
Confidence 884
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-22 Score=214.09 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=21.6
Q ss_pred cccCcccceeeeccCcCCCCCCC-CCCCCCCcCeEEEecCCC
Q 002187 892 IRIMPRLSSLSIVYCPKLKALPD-HLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 892 ~~~~~~L~~L~i~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 932 (955)
+..+|+|++|.+.+|. ++.+|. .+..+++|++|++.+++.
T Consensus 388 f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 3345566666665553 555552 344555566666555543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-22 Score=211.68 Aligned_cols=336 Identities=20% Similarity=0.237 Sum_probs=210.6
Q ss_pred EEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEe
Q 002187 542 FHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNL 620 (955)
Q Consensus 542 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L 620 (955)
..+.+..|....+|.... ...+|..|++.++....+ -.+.+..++.||+|||+.|.+.++| .++..-.++++|+|
T Consensus 105 q~v~l~~N~Lt~IP~f~~-~sghl~~L~L~~N~I~sv---~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 105 QEVNLNKNELTRIPRFGH-ESGHLEKLDLRHNLISSV---TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred eeeeeccchhhhcccccc-cccceeEEeeeccccccc---cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 333444443333333322 334444555544442222 2233566667777777777777665 34555567777777
Q ss_pred ecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCCCCccc-ccCCCCCCCCCccceeEecC
Q 002187 621 SCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTDSLRYL-PVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 621 ~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~ 697 (955)
++|. |+.+- ..+.+|.+|-+|.|+.|+ ++.+|.- |.+|++|+.|++..| .++.+ -..+..|.+|+.|.+..++.
T Consensus 181 a~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 181 ASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred cccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCc
Confidence 7777 66654 346666677777777776 6666654 344777777777666 23322 12356667777766666554
Q ss_pred ccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC
Q 002187 698 GYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEAL 777 (955)
Q Consensus 698 ~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 777 (955)
.......+-.+.++..| .+.. ..........+-+++.|+.|+|++|.+.... .++.
T Consensus 258 ~kL~DG~Fy~l~kme~l---~L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-----------------~d~W 313 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHL---NLET----NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-----------------IDSW 313 (873)
T ss_pred ccccCcceeeeccccee---eccc----chhhhhhcccccccchhhhhccchhhhheee-----------------cchh
Confidence 43222233333333322 1111 1112222345667788888888888654322 3355
Q ss_pred CCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeCccccCCcc
Q 002187 778 GPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLGVER 855 (955)
Q Consensus 778 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~ 855 (955)
..++.|+.|+|++|.+.. +++..+..+..|+.|+|+.| .++.+-. +..+.+|+.|+|+.+. +.-.-++..+
T Consensus 314 sftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~--- 386 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAV--- 386 (873)
T ss_pred hhcccceeEecccccccc--CChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchh---
Confidence 567899999999999998 87888889999999999999 5555543 6779999999998765 3322222111
Q ss_pred CCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCC-CCCCCCCCCcCeEEEe
Q 002187 856 DTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKAL-PDHLLQKTTLQRLSIF 928 (955)
Q Consensus 856 ~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~l~~L~~L~l~ 928 (955)
...++|+|++|.|.++ +++.+... .+..+++|++|++.+|+ +.++ |..+..+ .|++|.+.
T Consensus 387 -----~f~gl~~LrkL~l~gN-qlk~I~kr-----Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 387 -----AFNGLPSLRKLRLTGN-QLKSIPKR-----AFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -----hhccchhhhheeecCc-eeeecchh-----hhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 1347999999999997 78877664 47789999999999998 4444 5666666 88888765
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=4.3e-23 Score=220.29 Aligned_cols=321 Identities=24% Similarity=0.258 Sum_probs=240.9
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
.++.|+++..+....+..... .++.||++.+..+...+. . +|.-+..+..|.+|||++|++.+.|..+.+-+++-.|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~LKns-G-iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNLKNS-G-IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhccccccC-C-CCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 688899999888776666666 889999999887754222 1 2333678999999999999999999999999999999
Q ss_pred EeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 619 NLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 619 ~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
+||+|+ |..+|.+ +-+|..|-+|||++|+ ++.+|..+..|.+|+.|.+++|.....--..+..|++|++|.......
T Consensus 132 NLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 132 NLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 999998 9999976 4688999999999998 999999999999999999999854332234456688888888776654
Q ss_pred cc-CCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhh
Q 002187 698 GY-DKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEA 776 (955)
Q Consensus 698 ~~-~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 776 (955)
.- ..+.++..+.+|..+. ++-.++..+ ...+.++.+|+.|+|+.|.+..... .
T Consensus 210 Tl~N~Ptsld~l~NL~dvD-lS~N~Lp~v-------Pecly~l~~LrrLNLS~N~iteL~~------------------~ 263 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVD-LSENNLPIV-------PECLYKLRNLRRLNLSGNKITELNM------------------T 263 (1255)
T ss_pred hhhcCCCchhhhhhhhhcc-ccccCCCcc-------hHHHhhhhhhheeccCcCceeeeec------------------c
Confidence 32 1234444444443222 222222222 2346678899999999996544321 1
Q ss_pred CCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCC-CCcCCC-CCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 777 LGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSN-CEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
...-.+|+.|+++.|..+. + |..+..+++|++|.+.+|+. .+.+|+ +|.|..|+.+...++. ++-+++.+
T Consensus 264 ~~~W~~lEtLNlSrNQLt~--L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEgl---- 335 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTV--L-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGL---- 335 (1255)
T ss_pred HHHHhhhhhhccccchhcc--c-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhh----
Confidence 1223589999999999887 7 99999999999999999953 457887 9999999999986654 55555432
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCC
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALP 913 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 913 (955)
..|++|+.|.|..+. | ..+|..+.-+|-|+.|+++.||+|..-|
T Consensus 336 --------cRC~kL~kL~L~~Nr-L------iTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 --------CRCVKLQKLKLDHNR-L------ITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred --------hhhHHHHHhcccccc-e------eechhhhhhcCCcceeeccCCcCccCCC
Confidence 378999999998763 3 2355578889999999999999988544
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=9.8e-20 Score=229.92 Aligned_cols=339 Identities=20% Similarity=0.236 Sum_probs=243.1
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCC-cccccccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSV-IIEIPTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~L~~Lr~ 617 (955)
.++|.+.+..+....+|..+ ...+|+.|.+.++.. .. ++..+..+++|+.|+|+++. +..+| .++.+++|++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l---~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKL---EK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC--CccCCcEEECcCccc---cc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccE
Confidence 46888888888777777665 578999999988752 22 44457889999999999876 66776 4889999999
Q ss_pred EEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 618 LNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 618 L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
|+|++|..+..+|.+++++++|+.|++++|..++.+|..+ ++++|++|++++|..+..+|.. .++|+.|++..+..
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 9999998899999999999999999999999899999877 8999999999999888777754 45677777655543
Q ss_pred ccCCccCccccccCCCCCCceEeCCCC--CCC-HhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHh
Q 002187 698 GYDKACSLGSLKKLNLLRQCRIRGLGD--FSD-VGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLL 774 (955)
Q Consensus 698 ~~~~~~~l~~L~~L~~L~~l~i~~~~~--~~~-~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 774 (955)
.. .+.. ..+.+|..|.+.++.. +.. ............++|+.|+|+.|... ..++
T Consensus 738 ~~-lP~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-----------------~~lP 795 (1153)
T PLN03210 738 EE-FPSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-----------------VELP 795 (1153)
T ss_pred cc-cccc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-----------------cccC
Confidence 22 1111 1234444444333211 000 00000011123468999999877321 1234
Q ss_pred hhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 775 EALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 775 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
..+..+++|+.|+|++|..... + |..+ ++++|+.|+|++|..+..+|.+ .++|+.|+|.++. ++.++..
T Consensus 796 ~si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s----- 864 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW----- 864 (1153)
T ss_pred hhhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH-----
Confidence 5677889999999999865542 4 5554 7899999999999888877764 4689999997764 5544432
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCC-------------CCCCCC
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDH-------------LLQKTT 921 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-------------~~~l~~ 921 (955)
...+++|+.|++.+|++|..+.. ....+++|+.|++++|++|..++.. ...+++
T Consensus 865 -------i~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~ 931 (1153)
T PLN03210 865 -------IEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPS 931 (1153)
T ss_pred -------HhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCc
Confidence 23789999999999999987665 4678999999999999988765421 012334
Q ss_pred cCeEEEecCCCcc
Q 002187 922 LQRLSIFSCPILK 934 (955)
Q Consensus 922 L~~L~l~~c~~l~ 934 (955)
...+.+.+|.++.
T Consensus 932 ~~~l~f~nC~~L~ 944 (1153)
T PLN03210 932 TVCINFINCFNLD 944 (1153)
T ss_pred hhccccccccCCC
Confidence 4556677887765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=3.3e-21 Score=196.63 Aligned_cols=149 Identities=26% Similarity=0.375 Sum_probs=105.8
Q ss_pred eEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEe
Q 002187 541 VFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNL 620 (955)
Q Consensus 541 ~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L 620 (955)
..-+.++.+.....|.++. ++..+..|+++.+. ... +|..+..+..|+.|+.++|.+.++|++|+.+..|..|+.
T Consensus 70 l~vl~~~~n~l~~lp~aig-~l~~l~~l~vs~n~---ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIG-ELEALKSLNVSHNK---LSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred eeEEEeccchhhhCCHHHH-HHHHHHHhhcccch---Hhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 3445556666666677776 77777777777664 233 444467777777788888887777778888888888877
Q ss_pred ecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 621 SCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 621 ~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
.+|+ +..+|+.++++..|-.|++.+|. +.++|.....++.|+||+...| .++.+|+.++.|.+|..|++..+..
T Consensus 145 ~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 145 TNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred cccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc
Confidence 7777 77788777777777777777776 7777776666777777777655 6677777777777777776665543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.4e-20 Score=189.23 Aligned_cols=342 Identities=22% Similarity=0.240 Sum_probs=190.5
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecC
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQ 623 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~ 623 (955)
+.+..+....+..+.. .+..|.+|.+.++. ... +|..+..+..+..|+.++|++..+|+.++.+..|+.|+.+.|
T Consensus 50 lils~N~l~~l~~dl~-nL~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 50 LILSHNDLEVLREDLK-NLACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhccCchhhccHhhh-cccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 3344444333333333 45555555555543 112 222344555555555555555555555555555555555555
Q ss_pred CCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCcc
Q 002187 624 MEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKAC 703 (955)
Q Consensus 624 ~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 703 (955)
. +.++|++++.+..|+.|+..+|. +..+|.++.++.+|..|.+.+| .++.+|+..-.|+.|++|+...+....
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~t---- 197 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLET---- 197 (565)
T ss_pred c-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhc----
Confidence 5 55555555555555555555554 5555555555555555555555 344444444345555555544333222
Q ss_pred CccccccCCCCCCceEeC--CCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCC
Q 002187 704 SLGSLKKLNLLRQCRIRG--LGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPP 781 (955)
Q Consensus 704 ~l~~L~~L~~L~~l~i~~--~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 781 (955)
.-.+++.|..|..|.+.. +..+ ..+.+|..|.+|+++.|.++.. -.+....++
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~l--------Pef~gcs~L~Elh~g~N~i~~l-----------------pae~~~~L~ 252 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFL--------PEFPGCSLLKELHVGENQIEML-----------------PAEHLKHLN 252 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccC--------CCCCccHHHHHHHhcccHHHhh-----------------HHHHhcccc
Confidence 112222222222221111 0000 1233444555555554432211 112445788
Q ss_pred CCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCcccc---------
Q 002187 782 NLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFL--------- 851 (955)
Q Consensus 782 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~--------- 851 (955)
+|..|++.+|...+ + |.-+.-+.+|.+|++++| .++.+|. +|++ +|+.|.+.|++ ++.+..+..
T Consensus 253 ~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLK 326 (565)
T ss_pred cceeeecccccccc--C-chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHH
Confidence 99999999999998 8 888889999999999999 6777776 9999 99999999876 333221110
Q ss_pred -------CCccC--------CCCccccCCC------ccceeeeccccccccccc--------------------------
Q 002187 852 -------GVERD--------TDGSSVIAFP------KLKELRFWSMKELEEWDF-------------------------- 884 (955)
Q Consensus 852 -------~~~~~--------~~~~~~~~fp------~L~~L~l~~~~~L~~~~~-------------------------- 884 (955)
+.+.. ........|| ..+.|.+++. +++.++.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk 405 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK 405 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhh
Confidence 00000 0000111333 3455555432 2222211
Q ss_pred ------------------ccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecC
Q 002187 885 ------------------VTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSC 930 (955)
Q Consensus 885 ------------------~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c 930 (955)
....|..+..+++|..|++++++ +..+|..++++.+|+.|+|+.+
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccc
Confidence 11122355689999999999998 9999999999999999999977
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=2.9e-18 Score=193.04 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=62.7
Q ss_pred eEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEe
Q 002187 541 VFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNL 620 (955)
Q Consensus 541 ~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L 620 (955)
+.++.+.++....+|..+. .+++|+.|.++.+. +.. .|....++++|++|.|.+|.+..+|.++.++++|+||++
T Consensus 47 L~~l~lsnn~~~~fp~~it-~l~~L~~ln~s~n~---i~~-vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQIT-LLSHLRQLNLSRNY---IRS-VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhh-hHHHHhhcccchhh---Hhh-CchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 3444444444444444444 44444444444443 111 222344444444444444444444444444444444444
Q ss_pred ecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEe
Q 002187 621 SCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 621 ~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (955)
++|. +...|.-+..+..+..++.++|..+..++... .+++++..+.....++.+++.++. +|++..+
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN 188 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence 4444 44444444444444444444442222222211 444444444444445555555555 3444433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=3e-17 Score=184.91 Aligned_cols=279 Identities=22% Similarity=0.272 Sum_probs=148.4
Q ss_pred CCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCcccc
Q 002187 550 RGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERL 629 (955)
Q Consensus 550 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~L 629 (955)
..+.+|..++ ....+..|.+..+.. .+.+-++..+.-+|++||+++|.+..+|..|..+.+|+.|+++.|. |..+
T Consensus 9 ~l~~ip~~i~-~~~~~~~ln~~~N~~---l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~v 83 (1081)
T KOG0618|consen 9 QLELIPEQIL-NNEALQILNLRRNSL---LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSV 83 (1081)
T ss_pred cCcccchhhc-cHHHHHhhhcccccc---ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhC
Confidence 3344455444 333355555544431 1101112333444777777777777777777777777777777777 7777
Q ss_pred chhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccC---------
Q 002187 630 PETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYD--------- 700 (955)
Q Consensus 630 P~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~--------- 700 (955)
|.+++++.+|++|+|.+|. +..+|.++..+++|+.|++++| .....|.-+..++.+..+....+.....
T Consensus 84 p~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~ 161 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKL 161 (1081)
T ss_pred chhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhh
Confidence 7777777777777777776 7777777777777777777777 4555665555555554444433310000
Q ss_pred -------CccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcc--cccCCCCchhhHH
Q 002187 701 -------KACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEE--QAGRRENEEDEDE 771 (955)
Q Consensus 701 -------~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~--~~~~~~~~~~~~~ 771 (955)
....+.+...++. .+.+.. ... ....+..+.+|+.|....|.+...... +........+ ..
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~------N~~-~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n-~l 231 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTH--QLDLRY------NEM-EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHN-PL 231 (1081)
T ss_pred hhhhhhcccchhcchhhhhe--eeeccc------chh-hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccC-cc
Confidence 0001111111111 011100 000 012344445555554444433211100 0000000000 00
Q ss_pred HHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCC----------------------CCCcCCC-CCC
Q 002187 772 RLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCS----------------------NCEHLPP-LGK 828 (955)
Q Consensus 772 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~----------------------~~~~l~~-l~~ 828 (955)
.....-.-+.+|++++++.+.... + |+|++.+.+|+.|....|. .+..+|. +++
T Consensus 232 ~~~~~~p~p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 232 TTLDVHPVPLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEG 308 (1081)
T ss_pred eeeccccccccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccc
Confidence 011111234689999999988887 7 7999988888888887763 2222444 455
Q ss_pred CCCcceeeecCCCCceEeCcc
Q 002187 829 LPSLEDLEILGMGSVKRVGNE 849 (955)
Q Consensus 829 l~~L~~L~L~~~~~l~~i~~~ 849 (955)
+.+|++|+|..+. +...+..
T Consensus 309 ~~sL~tLdL~~N~-L~~lp~~ 328 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNN-LPSLPDN 328 (1081)
T ss_pred cceeeeeeehhcc-ccccchH
Confidence 8888888887654 4444433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=3.4e-14 Score=166.35 Aligned_cols=257 Identities=19% Similarity=0.179 Sum_probs=143.9
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCC
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEND 669 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (955)
..-.+|+|+++.++.+|..+. .+|+.|++++|. ++.+|.. +++|++|++++|. ++.+|.. .++|++|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeecc
Confidence 345667777777777776665 367777777766 7777652 4667777777765 6666642 3566777776
Q ss_pred CCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEe
Q 002187 670 QTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHF 749 (955)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 749 (955)
+| .+..+|... ++|..|.+..+.... .+. .+.+|+.|.+.+. .+.... . -..+|+.|.++.
T Consensus 271 ~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~------~p~~L~~LdLS~N-~L~~Lp----~---lp~~L~~L~Ls~ 331 (788)
T PRK15387 271 SN-PLTHLPALP---SGLCKLWIFGNQLTS-LPV------LPPGLQELSVSDN-QLASLP----A---LPSELCKLWAYN 331 (788)
T ss_pred CC-chhhhhhch---hhcCEEECcCCcccc-ccc------cccccceeECCCC-ccccCC----C---Cccccccccccc
Confidence 66 344555422 334444443332221 000 0122333333221 000000 0 012455666666
Q ss_pred ecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCC
Q 002187 750 DHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKL 829 (955)
Q Consensus 750 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 829 (955)
|.+...+ . .+++|+.|+|++|.+.. + |.. .++|+.|++++| .+..+|.+ .
T Consensus 332 N~L~~LP-------------------~--lp~~Lq~LdLS~N~Ls~--L-P~l---p~~L~~L~Ls~N-~L~~LP~l--~ 381 (788)
T PRK15387 332 NQLTSLP-------------------T--LPSGLQELSVSDNQLAS--L-PTL---PSELYKLWAYNN-RLTSLPAL--P 381 (788)
T ss_pred Ccccccc-------------------c--cccccceEecCCCccCC--C-CCC---Ccccceehhhcc-ccccCccc--c
Confidence 6432210 1 12477888888777766 5 432 356777777777 45556653 3
Q ss_pred CCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCC
Q 002187 830 PSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKL 909 (955)
Q Consensus 830 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l 909 (955)
++|+.|+|+++. +..++. .+++|+.|+++++ .+..++. .+.+|+.|++++|. +
T Consensus 382 ~~L~~LdLs~N~-Lt~LP~---------------l~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~Nq-L 434 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLPV---------------LPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRNQ-L 434 (788)
T ss_pred cccceEEecCCc-ccCCCC---------------cccCCCEEEccCC-cCCCCCc---------chhhhhhhhhccCc-c
Confidence 467777776654 332221 2356778877776 3443321 23467778887775 7
Q ss_pred CCCCCCCCCCCCcCeEEEecCCC
Q 002187 910 KALPDHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 910 ~~lp~~~~~l~~L~~L~l~~c~~ 932 (955)
+.+|..+..+++|+.|++++|+-
T Consensus 435 t~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 435 TRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cccChHHhhccCCCeEECCCCCC
Confidence 77887777788888888887754
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=6.4e-15 Score=176.36 Aligned_cols=340 Identities=24% Similarity=0.313 Sum_probs=233.4
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCC--ccccccc-ccCCCCcceEEeecCCCccccchhhcCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSV--IIEIPTN-IEKLLHLKYLNLSCQMEIERLPETLCELY 637 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~--~~~lp~~-i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~ 637 (955)
.....|...+.++....+ +. -..++.|++|-+.++. +..++.. |..+++|++|||++|..+.+||.+|++|.
T Consensus 521 ~~~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred chhheeEEEEeccchhhc----cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 345667777776652111 11 2456689999999986 6666544 78899999999999988999999999999
Q ss_pred CCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCc
Q 002187 638 NLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQC 717 (955)
Q Consensus 638 ~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 717 (955)
+||+|+++++. +..+|.++.+|++|.||++..+..+..+|.....|++|++|.++..... .....+.++.+|..|+.+
T Consensus 596 ~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 596 HLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENL 673 (889)
T ss_pred hhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhh
Confidence 99999999998 9999999999999999999998777777666777999999998876522 235677788888888877
Q ss_pred eEeCCCCCCCHhhhHHhhccCCCCCCc----EEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecC
Q 002187 718 RIRGLGDFSDVGEARRAELEKKKNLIE----LGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRG 793 (955)
Q Consensus 718 ~i~~~~~~~~~~~~~~~~l~~~~~L~~----L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 793 (955)
+++.... .....+..+..|.+ +.+..+ ........+..+++|+.|.|.+|.+
T Consensus 674 s~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~------------------~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 674 SITISSV------LLLEDLLGMTRLRSLLQSLSIEGC------------------SKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred eeecchh------HhHhhhhhhHHHHHHhHhhhhccc------------------ccceeecccccccCcceEEEEcCCC
Confidence 7754221 01111222333332 222211 1112344667789999999999998
Q ss_pred CCCCCCCChhc-----c-cccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCc
Q 002187 794 RRNVVPKNWVM-----S-LTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPK 867 (955)
Q Consensus 794 ~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 867 (955)
.. ....|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|+.++.+-+..-..... ......|++
T Consensus 730 ~e--~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l--~~~i~~f~~ 805 (889)
T KOG4658|consen 730 SE--IVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL--KELILPFNK 805 (889)
T ss_pred ch--hhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc--ccEEecccc
Confidence 75 2233322 2 667888888888777777777789999999999998776553322111000 001235777
Q ss_pred ccee-eecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecC-CCccccccc----CC
Q 002187 868 LKEL-RFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSC-PILKKTKER----GE 941 (955)
Q Consensus 868 L~~L-~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c-~~l~~~~~~----~~ 941 (955)
+..+ .+.+.+.+.++.. ....+++|+.+.+..||+++.+| .+.++.+.+| +++...+++ +.
T Consensus 806 ~~~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~~~~~~~~~~~~~~~~v 872 (889)
T KOG4658|consen 806 LEGLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGCEEKLKEYPDGEWLEGV 872 (889)
T ss_pred cccceeeecCCCCceeEe------cccCccchhheehhcCcccccCc-------cccccceeccccceeecCCccceeeE
Confidence 7777 4666666666555 22356779999999999888776 4456677776 666665443 44
Q ss_pred CccccCC
Q 002187 942 DWPKIRH 948 (955)
Q Consensus 942 ~~~~i~h 948 (955)
.|.+-..
T Consensus 873 ~~~~~~~ 879 (889)
T KOG4658|consen 873 YWEDELT 879 (889)
T ss_pred Eehhhhh
Confidence 4544433
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=3.1e-13 Score=158.38 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=144.4
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecC
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQ 623 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~ 623 (955)
+.+..+.+..+|..+. ++|+.|.+.++.... +| ...++|++|+|++|.++.+|.. ..+|++|++++|
T Consensus 206 LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~----LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 206 LNVGESGLTTLPDCLP---AHITTLVIPDNNLTS----LP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred EEcCCCCCCcCCcchh---cCCCEEEccCCcCCC----CC---CCCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 4444455554555443 356777776665322 11 1246777777777777777643 356777777777
Q ss_pred CCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCcc
Q 002187 624 MEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKAC 703 (955)
Q Consensus 624 ~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 703 (955)
. +..+|.. ..+|+.|++++|. +..+|.. +++|++|++++| .+..+|.... +|+.|.+..+...
T Consensus 273 ~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~N~L~----- 335 (788)
T PRK15387 273 P-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPS---ELCKLWAYNNQLT----- 335 (788)
T ss_pred c-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCcc---cccccccccCccc-----
Confidence 6 7777653 2456777777776 6677652 456777777776 4455554222 2333332211110
Q ss_pred CccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCC
Q 002187 704 SLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNL 783 (955)
Q Consensus 704 ~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 783 (955)
.++. -..+|+.|+|+.|.+...+ . .+++|
T Consensus 336 --------------------~LP~----------lp~~Lq~LdLS~N~Ls~LP-------------------~--lp~~L 364 (788)
T PRK15387 336 --------------------SLPT----------LPSGLQELSVSDNQLASLP-------------------T--LPSEL 364 (788)
T ss_pred --------------------cccc----------cccccceEecCCCccCCCC-------------------C--CCccc
Confidence 0110 0135777777777543211 1 13567
Q ss_pred CeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCcccc
Q 002187 784 KELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVI 863 (955)
Q Consensus 784 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~ 863 (955)
+.|++++|.+.. + |.. ..+|+.|+|++| .++.+|.. .++|+.|+++++. +..++.
T Consensus 365 ~~L~Ls~N~L~~--L-P~l---~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~--------------- 419 (788)
T PRK15387 365 YKLWAYNNRLTS--L-PAL---PSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM--------------- 419 (788)
T ss_pred ceehhhcccccc--C-ccc---ccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------
Confidence 777777777665 5 432 356778888777 55556653 3567788877665 333321
Q ss_pred CCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 864 AFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 864 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
.+.+|+.|+++++ .++. +|..++.+++|+.|++++|+
T Consensus 420 l~~~L~~L~Ls~N-qLt~------LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 LPSGLLSLSVYRN-QLTR------LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred chhhhhhhhhccC-cccc------cChHHhhccCCCeEECCCCC
Confidence 2345777777765 3433 34456778888888888886
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=9.1e-11 Score=132.62 Aligned_cols=322 Identities=15% Similarity=0.109 Sum_probs=190.8
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 174 IDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 174 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++.++||++++++|...|..... +.....+.|+|++|+|||++++.++++.......-..++|++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3456899999999999999854321 12344578999999999999999999543322123456777777778889999
Q ss_pred HHHHHHcCCC--CCCCChHHHHHHHHHHhc--CceEEEEEeCCCCcc----ccChhhHHhhccCCCCCcE--EEEecCCh
Q 002187 254 AIIEALTGSA--SNFGEFQSLMQHIQECVQ--RKKFLLVLDDVWNED----YCKWEPFYHCLKDGLHESK--ILITTRKE 323 (955)
Q Consensus 254 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~ 323 (955)
.++.++.... ....+.+++...+.+.+. ++..+||||+++.-. .+.+..+...+.. ..+++ ||.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 9999987522 122345667777777775 456899999997532 1122223222222 22333 56665554
Q ss_pred hHHHhhc-------CcceEeCCCCChhhHHHHhHhhhcCC--CCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHh--c-
Q 002187 324 TVACIMG-------STNIISINVLSEMGCWLVFEPLAFSG--KSTVERENLEEIGREITRKCKGLPLAAKTIACLL--R- 391 (955)
Q Consensus 324 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l--~- 391 (955)
.+..... ....+.+++++.++..+++..++... .....+..++.+++......|..+.|+.++-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3332211 12467899999999999998876322 1112233344444444444577888887765432 1
Q ss_pred --CC--CCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccC-C-CCcccchHHHHH--HHHHcCCc
Q 002187 392 --SK--NTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVF-P-KDYRIWKYKLIE--LWMAQGYL 463 (955)
Q Consensus 392 --~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~f-p-~~~~i~~~~Li~--~W~a~g~i 463 (955)
+. -+.++...+.+.. -.....-.+..||.+.|..+.-++.. . ....+....+.. ..+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 2455555555432 11223456789999877765544422 2 113455555553 23332221
Q ss_pred ccCCCCcHHHHHHHHHHHHhhccCccccc--ccCCCcEeEEEeChHHHHH
Q 002187 464 SEKGPKEMEDIGEEYFNTLASRSFFQDLE--RERDGKIYACKMHDIVHDF 511 (955)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~~~~~~mHdlv~d~ 511 (955)
. . .........|+++|...++|.... .+..|+.+.++++.-.-++
T Consensus 334 ~--~-~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~ 380 (394)
T PRK00411 334 Y--E-PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDV 380 (394)
T ss_pred C--C-cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHH
Confidence 1 0 111244567999999999998653 3445666666665433333
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=2.8e-13 Score=159.98 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=58.7
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCC
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEND 669 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (955)
.+..+|+++++.++.+|..+. .+|+.|+|++|. ++.+|..+. .+|++|++++|. ++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECc
Confidence 345677777777777776554 467777777776 777776554 477777777766 666766543 367777777
Q ss_pred CCCCCcccccCCCCCCCCCcccee
Q 002187 670 QTDSLRYLPVGIGELISLRRVSKL 693 (955)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~ 693 (955)
+| .+..+|..+. ++|+.|++.
T Consensus 250 ~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 250 IN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred CC-ccCcCChhHh--CCCCEEECc
Confidence 76 3455665543 345555543
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=3.7e-11 Score=151.63 Aligned_cols=293 Identities=16% Similarity=0.196 Sum_probs=180.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-CcccHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS-ELFDEFRIARA 254 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~ 254 (955)
.+.+|-|+.-.+. |.. ....+++.|+|++|.||||++..+.+. ++.++|+++. .+.+...+...
T Consensus 13 ~~~~~~R~rl~~~----l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAK----LSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHH----Hhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 4567777754444 422 125779999999999999999998852 2368899996 44566777777
Q ss_pred HHHHHcCCCCC-------------CCChHHHHHHHHHHhc--CceEEEEEeCCCCccccChhhHH-hhccCCCCCcEEEE
Q 002187 255 IIEALTGSASN-------------FGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDYCKWEPFY-HCLKDGLHESKILI 318 (955)
Q Consensus 255 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~-~~l~~~~~gs~iiv 318 (955)
++..+...... ..+...+...+-..+. +.+++|||||+...+......+. ..++....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777421111 0122233333333332 67899999999654333333333 33444455678889
Q ss_pred ecCChh---HHHhhcCcceEeCC----CCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhc
Q 002187 319 TTRKET---VACIMGSTNIISIN----VLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLR 391 (955)
Q Consensus 319 Ttr~~~---v~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 391 (955)
|||... ...........++. +|+.+|+.++|....... . -.+...+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999842 11111123345566 999999999997654321 1 134467899999999999999887765
Q ss_pred CCCC-HHHHHHHHhhhchhhhh-hhcchhhHHH-HhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCC
Q 002187 392 SKNT-EKEWQNILESEIWEIEE-VEKGLLAPLL-LSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGP 468 (955)
Q Consensus 392 ~~~~-~~~w~~~~~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~ 468 (955)
.... ... .. +.... ....+...+. -.++.||++.+..+...|+++ .|+.+ +. ..+...
T Consensus 231 ~~~~~~~~---~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~~--- 291 (903)
T PRK04841 231 QNNSSLHD---SA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTGE--- 291 (903)
T ss_pred hCCCchhh---hh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcCC---
Confidence 4422 110 00 11111 1122444433 347899999999999999997 33322 22 222111
Q ss_pred CcHHHHHHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhc
Q 002187 469 KEMEDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLC 516 (955)
Q Consensus 469 ~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~ 516 (955)
+.+...+++|..+++|..... ..+ .+|++|++++++.+...
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~-~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMD-DSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeec-CCC--CEEehhHHHHHHHHHHH
Confidence 224678999999999743211 112 35788999999998654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=4.3e-13 Score=158.39 Aligned_cols=248 Identities=16% Similarity=0.179 Sum_probs=143.0
Q ss_pred ceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEE
Q 002187 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLN 619 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~ 619 (955)
+...+.+....+..+|..+. ++|+.|++.+|....+ |..+ +.+|++|++++|.+..+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~LtsL----P~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP---EQITTLILDNNELKSL----PENL--QGNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCcccc---cCCcEEEecCCCCCcC----Chhh--ccCCCEEECCCCccccCChhhh--ccccEEE
Confidence 34556666666665665443 4678888887764322 2212 2478888888888888877654 3688888
Q ss_pred eecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCcc
Q 002187 620 LSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGY 699 (955)
Q Consensus 620 L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (955)
|++|. +..+|..+. .+|++|++++|. +..+|..+. ++|++|++++| .++.+|..+. ++|+.|++..+....
T Consensus 248 Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCcccc
Confidence 88887 778887664 478888888776 777877653 47888888877 5556665432 244444443322111
Q ss_pred CCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCC
Q 002187 700 DKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGP 779 (955)
Q Consensus 700 ~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (955)
++. . -.++|+.|.+..|.+...+ ..+
T Consensus 319 -------------------------LP~-------~--l~~sL~~L~Ls~N~Lt~LP------------------~~l-- 344 (754)
T PRK15370 319 -------------------------LPE-------T--LPPGLKTLEAGENALTSLP------------------ASL-- 344 (754)
T ss_pred -------------------------CCc-------c--ccccceeccccCCccccCC------------------hhh--
Confidence 000 0 0135566666665432211 111
Q ss_pred CCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCC
Q 002187 780 PPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDG 859 (955)
Q Consensus 780 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 859 (955)
+++|+.|++++|.+.. + |..+ .++|+.|+|++| .++.+|.- -.++|+.|++++|. +..++..+...
T Consensus 345 ~~sL~~L~Ls~N~L~~--L-P~~l--p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~-L~~LP~sl~~~------ 410 (754)
T PRK15370 345 PPELQVLDVSKNQITV--L-PETL--PPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRNN-LVRLPESLPHF------ 410 (754)
T ss_pred cCcccEEECCCCCCCc--C-Chhh--cCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccCC-cccCchhHHHH------
Confidence 2567777777776655 5 4433 356777777777 44455541 11356677776654 44443322111
Q ss_pred ccccCCCccceeeecccc
Q 002187 860 SSVIAFPKLKELRFWSMK 877 (955)
Q Consensus 860 ~~~~~fp~L~~L~l~~~~ 877 (955)
...+|++..|.+.+++
T Consensus 411 --~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 411 --RGEGPQPTRIIVEYNP 426 (754)
T ss_pred --hhcCCCccEEEeeCCC
Confidence 1134666666666653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=1.6e-14 Score=130.98 Aligned_cols=150 Identities=24% Similarity=0.310 Sum_probs=95.7
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.++++..|.++.+..... .|. +..+.+|++|++++|+++++|.+++.|+.||.|++.-|. +..+|..+|.++-|+
T Consensus 31 ~~s~ITrLtLSHNKl~~v---ppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV---PPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCceeec---CCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 455555666666543221 122 566677777777777777777777777777777777776 777777777777777
Q ss_pred EEeeCCCCCcc--ccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCce
Q 002187 641 RLNVDSCSNLR--ELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCR 718 (955)
Q Consensus 641 ~LdL~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~ 718 (955)
.|||..|+ +. .+|..+..+..|+-|++++| ....+|..++++++||.|.+..++... .-.+++.|+.|+.|+
T Consensus 106 vldltynn-l~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~----lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 106 VLDLTYNN-LNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS----LPKEIGDLTRLRELH 179 (264)
T ss_pred hhhccccc-cccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh----CcHHHHHHHHHHHHh
Confidence 77777665 32 36777777777777777776 566777777777777777665554432 223334444444444
Q ss_pred EeC
Q 002187 719 IRG 721 (955)
Q Consensus 719 i~~ 721 (955)
|.+
T Consensus 180 iqg 182 (264)
T KOG0617|consen 180 IQG 182 (264)
T ss_pred ccc
Confidence 433
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=2e-13 Score=140.25 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=97.7
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCC-CCcccccc-cccCCCCcc
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDG-SVIIEIPT-NIEKLLHLK 616 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~-~~~~~lp~-~i~~L~~Lr 616 (955)
..+..+.+..|.+..+|...|+.+++||.|+++.|. +..+-++.|.+++.|..|-+.+ |+|+++|+ .|++|..|+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 566777888888888888888888888888888876 4444567788888877776665 77888874 478888888
Q ss_pred eEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCC
Q 002187 617 YLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTD 672 (955)
Q Consensus 617 ~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 672 (955)
.|.+.-|. +.-++ ..+..|++|..|.+.+|. ++.++. .+..+..++++++..|.
T Consensus 144 rLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 88888777 65544 567888888888888877 777777 56778888888776653
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=3e-09 Score=118.92 Aligned_cols=302 Identities=13% Similarity=0.111 Sum_probs=176.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh-ccC---CceEEEEeCCcccHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK-KKF---EKRMWICVSELFDEFR 250 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~ 250 (955)
.+..++||++++++|..+|..... +.....+.|+|++|+|||++++.++++.... ... -..+|+.+....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345899999999999999864321 1234568999999999999999999853211 111 1356888887778888
Q ss_pred HHHHHHHHHc---CCCC-CCCChHHHHHHHHHHhc--CceEEEEEeCCCCccccChhhH-Hhhcc----CCC--CCcEEE
Q 002187 251 IARAIIEALT---GSAS-NFGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDYCKWEPF-YHCLK----DGL--HESKIL 317 (955)
Q Consensus 251 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l-~~~l~----~~~--~gs~ii 317 (955)
++..|++++. ...+ ...+..++...+.+.+. +++++||||+++.-. .....+ ...+. ... ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999984 2211 12234455556666663 568899999997542 111222 22111 111 222345
Q ss_pred EecCChhHHHhhc-----C--cceEeCCCCChhhHHHHhHhhhcCC-CCCCCcchHHHHHHHHHhhcCCChHHH-HHHHH
Q 002187 318 ITTRKETVACIMG-----S--TNIISINVLSEMGCWLVFEPLAFSG-KSTVERENLEEIGREITRKCKGLPLAA-KTIAC 388 (955)
Q Consensus 318 vTtr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~glPlai-~~~~~ 388 (955)
.+|........+. . ...+.+++.+.++..+++..++... ......++..+...+++....|.|-.+ .++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554433221111 1 2468899999999999999876311 111223344445566777777888444 33222
Q ss_pred Hh--c--C---CCCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccC--CCCcccchHHHHHHHH-
Q 002187 389 LL--R--S---KNTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVF--PKDYRIWKYKLIELWM- 458 (955)
Q Consensus 389 ~l--~--~---~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~f--p~~~~i~~~~Li~~W~- 458 (955)
+. + . .-+.++...+.+.. -.....-++..||.+.|..+..+... ..+..+...++...+-
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 1 1 12344444443332 01223456778999888666555421 1344466666666332
Q ss_pred -HcCCcccCCCCcHHHHHHHHHHHHhhccCccccc
Q 002187 459 -AQGYLSEKGPKEMEDIGEEYFNTLASRSFFQDLE 492 (955)
Q Consensus 459 -a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 492 (955)
++. +.. ....+.....|+++|...|++....
T Consensus 320 ~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 221 111 1223467788999999999998643
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=2.5e-13 Score=139.52 Aligned_cols=268 Identities=18% Similarity=0.162 Sum_probs=160.9
Q ss_pred CCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEeecCCCcccc
Q 002187 551 GASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSCQMEIERL 629 (955)
Q Consensus 551 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~L 629 (955)
...+|..+. +....+.+..|. +..+.+.+|+.+++||+|||++|.|..+ |..|.+|..|-.|-+-+++.|+.+
T Consensus 58 L~eVP~~LP---~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 58 LTEVPANLP---PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cccCcccCC---CcceEEEeccCC---cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 344555543 445567777776 4555677899999999999999999887 788999999988888885459999
Q ss_pred ch-hhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEecCccCCccCcc
Q 002187 630 PE-TLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVVGGGYDKACSLG 706 (955)
Q Consensus 630 P~-~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~l~ 706 (955)
|. .+++|..||.|.+.-|+ +..++. .+..|++|..|.+.+| .+..++. .+..+.+++++.+..+.... .+.+.
T Consensus 132 ~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--dCnL~ 207 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--DCNLP 207 (498)
T ss_pred hhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc--ccccc
Confidence 96 58999999999999988 665554 5788999999999988 5667776 57888888888876655332 22222
Q ss_pred ccccCCCCCCceEeCCCCCCCH--hhhHHhhccCC---CCCCcE---EEEeecCCCCCcccccCCCCchhhHHHHhhhCC
Q 002187 707 SLKKLNLLRQCRIRGLGDFSDV--GEARRAELEKK---KNLIEL---GLHFDHIRDGDEEQAGRRENEEDEDERLLEALG 778 (955)
Q Consensus 707 ~L~~L~~L~~l~i~~~~~~~~~--~~~~~~~l~~~---~~L~~L---~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 778 (955)
.+..-...-.....+..-+... ........... .+++++ -...++.... .-...+.
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~----------------cP~~cf~ 271 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSI----------------CPAKCFK 271 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCc----------------ChHHHHh
Confidence 1111000000000010000000 00000000000 001111 0000000000 0011255
Q ss_pred CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeCc
Q 002187 779 PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGN 848 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~ 848 (955)
.+++|++|++++|.+.. +.+.||..+..++.|.|..| ++..+.. +..+..|+.|+|.++. ++.+..
T Consensus 272 ~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~ 339 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAP 339 (498)
T ss_pred hcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe-eEEEec
Confidence 56777777777777766 55777777777777777777 4444433 6667777777776655 554443
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=1.2e-09 Score=116.48 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=115.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH----
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQEC---- 279 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---- 279 (955)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..|+..++..... .+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 4478999999999999999999853311 11 12233 333457778889999888765332 2222233333332
Q ss_pred h-cCceEEEEEeCCCCccccChhhHHhhccC---CCCCcEEEEecCChhHHHhhc----------CcceEeCCCCChhhH
Q 002187 280 V-QRKKFLLVLDDVWNEDYCKWEPFYHCLKD---GLHESKILITTRKETVACIMG----------STNIISINVLSEMGC 345 (955)
Q Consensus 280 l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 345 (955)
. .+++++||+||+|..+...++.+...... +.....|++|.... ....+. ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2 67889999999987665556665533221 12223455665432 221111 134678999999999
Q ss_pred HHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHh
Q 002187 346 WLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLL 390 (955)
Q Consensus 346 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 390 (955)
.+++...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987764332211112234678999999999999999998775
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.4e-13 Score=123.43 Aligned_cols=150 Identities=25% Similarity=0.335 Sum_probs=117.1
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
+.+.++.++.+.+..+|..+. ++.+|.+|.++++. +.+ +|..+++++.||.|++.-|.+..+|..||.++-|+.|
T Consensus 33 s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnq---ie~-lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccch---hhh-cChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 467778888888887888877 88888888888876 333 5556788888888888888888888888888888888
Q ss_pred EeecCCCcc--ccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEec
Q 002187 619 NLSCQMEIE--RLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVG 696 (955)
Q Consensus 619 ~L~~~~~i~--~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 696 (955)
||+.|+ +. .+|..+-.+..|+.|.|++|. .+.+|.++++|++|+.|.+..| .+-.+|..++.++.|+.|.+..+.
T Consensus 108 dltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccc-cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccce
Confidence 888776 43 578777777778888888876 7778888888888888888777 455678888888888887765443
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=2.3e-10 Score=119.49 Aligned_cols=194 Identities=25% Similarity=0.163 Sum_probs=101.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH---
Q 002187 179 IVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI--- 255 (955)
Q Consensus 179 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--- 255 (955)
|+||++++++|.+++... ....+.|+|+.|+|||+|++.+.+. .+..-...+|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 799999999999998643 3458999999999999999999984 322212455555544433222 2221
Q ss_pred -------HHHHcCC--CC--------CCCChHHHHHHHHHHhc--CceEEEEEeCCCCcc-c-cChh----hHHhhccC-
Q 002187 256 -------IEALTGS--AS--------NFGEFQSLMQHIQECVQ--RKKFLLVLDDVWNED-Y-CKWE----PFYHCLKD- 309 (955)
Q Consensus 256 -------~~~l~~~--~~--------~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~-~-~~~~----~l~~~l~~- 309 (955)
...+... .. ...........+.+.+. +++.+||+||+..-. . .... .+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1112111 00 11122222333333333 346999999996533 0 1112 23333332
Q ss_pred --CCCCcEEEEecCChhHHHh--------hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC
Q 002187 310 --GLHESKILITTRKETVACI--------MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL 379 (955)
Q Consensus 310 --~~~gs~iivTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 379 (955)
..+.+ +|+++....+... .+....+.+++|+.+++++++...+-.. . .. +.-.+..++|...+||.
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 33344 4444444433332 2334469999999999999999865432 1 11 11244568999999999
Q ss_pred hHHHHH
Q 002187 380 PLAAKT 385 (955)
Q Consensus 380 Plai~~ 385 (955)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998864
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=5e-09 Score=114.51 Aligned_cols=278 Identities=16% Similarity=0.121 Sum_probs=148.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.+|+|++..++.+..++..... .......+.|+|++|+||||+|+.+++.. ...+ .++..+ .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 35799999999998888754221 12345678899999999999999999943 2221 122221 11111222233
Q ss_pred HHHHcCCC----CCCCCh-HHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHhhc
Q 002187 256 IEALTGSA----SNFGEF-QSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACIMG 330 (955)
Q Consensus 256 ~~~l~~~~----~~~~~~-~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 330 (955)
+..+.... ++.... ....+.+...+.+.+..+|+|+..+... +...++ +.+-|..||+...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCC---CceEEeecCCcccCCHHHH
Confidence 33322110 000000 1122233344444445555555432110 000111 2355667777554433321
Q ss_pred C--cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHHHhhhch
Q 002187 331 S--TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNILESEIW 408 (955)
Q Consensus 331 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~~~~ 408 (955)
. ...+.+++++.++..+++.+.+...+.. --.+....|++.|+|.|-.+..+...+ ..|....+...-
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~I 238 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGVI 238 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCCC
Confidence 1 3468999999999999999887543221 123568899999999996554444322 122222111000
Q ss_pred hhhhhhcchhhHHHHhhhcCCHhHHHHHh-hhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHHHHHHHH-HHhhcc
Q 002187 409 EIEEVEKGLLAPLLLSYNELPPKIKQCFT-YCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDIGEEYFN-TLASRS 486 (955)
Q Consensus 409 ~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~-~L~~~~ 486 (955)
. ...-......+...|..|++..+..+. ....|+.+ .+..+.+-... |. ..+.+++.++ .|++.+
T Consensus 239 ~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~--------~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 239 T-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE--------ERDTIEDVYEPYLIQQG 305 (328)
T ss_pred C-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC--------CcchHHHHhhHHHHHcC
Confidence 0 011112344556777888887777774 66677655 45555543222 11 1234555566 889999
Q ss_pred Ccccc
Q 002187 487 FFQDL 491 (955)
Q Consensus 487 ll~~~ 491 (955)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99643
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=1.3e-11 Score=135.74 Aligned_cols=87 Identities=23% Similarity=0.291 Sum_probs=55.4
Q ss_pred HHhcCCCcccEEEcCCCCcc-----cccccccCCCCcceEEeecCCCcc-------ccchhhcCCCCCCEEeeCCCCCcc
Q 002187 584 QLFDKLTCLRTLKLDGSVII-----EIPTNIEKLLHLKYLNLSCQMEIE-------RLPETLCELYNLERLNVDSCSNLR 651 (955)
Q Consensus 584 ~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~~i~-------~LP~~i~~L~~Lq~LdL~~~~~l~ 651 (955)
..|..+..|++|+++++.+. .++..+...++|++|+++++. +. .++..+.++++|+.|++++|....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 34566667888888888863 355566677778888888776 43 234456667777777777776322
Q ss_pred ccCccccCCCC---CcEeeCCCC
Q 002187 652 ELPQGIGKLRK---LMHLENDQT 671 (955)
Q Consensus 652 ~lp~~i~~L~~---L~~L~l~~~ 671 (955)
..+..+..+.+ |++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCC
Confidence 33444433333 777777666
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=4.4e-08 Score=111.90 Aligned_cols=297 Identities=18% Similarity=0.206 Sum_probs=188.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARA 254 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~ 254 (955)
+...|-|. ++.+.|.. ..+.+.+.|..++|.|||||+-..+. +. ..=..+.|.+.++. .+...+.+.
T Consensus 18 ~~~~v~R~----rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRP----RLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccH----HHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHH
Confidence 44556666 45555532 33789999999999999999998875 21 22245899998754 677888888
Q ss_pred HHHHHcCCCCC-------------CCChHHHHHHHHHHhc--CceEEEEEeCCCCccccChhh-HHhhccCCCCCcEEEE
Q 002187 255 IIEALTGSASN-------------FGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDYCKWEP-FYHCLKDGLHESKILI 318 (955)
Q Consensus 255 i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iiv 318 (955)
++..+..-.++ ..+...+...+...+. .++..+||||.--........ +...+.....+-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88888743222 1233344444444443 468899999975433223333 4444555667789999
Q ss_pred ecCChhH---HHhhcCcceEeC----CCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhc
Q 002187 319 TTRKETV---ACIMGSTNIISI----NVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLR 391 (955)
Q Consensus 319 Ttr~~~v---~~~~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 391 (955)
|||+..- ++.--.....++ =.++.+|+-++|....... -+ +.-.+.+.+..+|-+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9998642 221111222332 3688999999998764211 11 23477899999999999999998887
Q ss_pred CCCCHHHHHHHHhhhchhhhhhhcchhhH-HHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCc
Q 002187 392 SKNTEKEWQNILESEIWEIEEVEKGLLAP-LLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKE 470 (955)
Q Consensus 392 ~~~~~~~w~~~~~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~ 470 (955)
.+.+.+.-...++- ..+.+..- ..--++.||+++|..++-||+++. + -..|+..-.+
T Consensus 239 ~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f-~~eL~~~Ltg----------- 296 (894)
T COG2909 239 NNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---F-NDELCNALTG----------- 296 (894)
T ss_pred CCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---h-hHHHHHHHhc-----------
Confidence 44443333322221 11111111 223578899999999999999864 1 1233332211
Q ss_pred HHHHHHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhcc
Q 002187 471 MEDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLCM 517 (955)
Q Consensus 471 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~ 517 (955)
++-+...+++|.+++||-..-.+ .-.+|+.|.++.||.+.-..
T Consensus 297 -~~ng~amLe~L~~~gLFl~~Ldd---~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 297 -EENGQAMLEELERRGLFLQRLDD---EGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred -CCcHHHHHHHHHhCCCceeeecC---CCceeehhHHHHHHHHhhhc
Confidence 34577889999999987532222 22479999999999876543
No 32
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=2.8e-09 Score=104.52 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=89.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCcccHH---HHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKK----FEKRMWICVSELFDEF---RIARAIIEALTGSASNFGEFQSLMQHIQ 277 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 277 (955)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47899999999999999999986443332 3456677766554433 33333333332211 11111 222
Q ss_pred HH-hcCceEEEEEeCCCCcccc-------ChhhHH-hhccC-CCCCcEEEEecCChhH---HHhhcCcceEeCCCCChhh
Q 002187 278 EC-VQRKKFLLVLDDVWNEDYC-------KWEPFY-HCLKD-GLHESKILITTRKETV---ACIMGSTNIISINVLSEMG 344 (955)
Q Consensus 278 ~~-l~~k~~LlVlDdvw~~~~~-------~~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 344 (955)
.. -+.++++||||++++.... .+..+. ..++. ..++.++|||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 2578999999999753221 122333 23333 2568999999998765 3344455689999999999
Q ss_pred HHHHhHhhh
Q 002187 345 CWLVFEPLA 353 (955)
Q Consensus 345 ~~~lf~~~~ 353 (955)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997754
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=4.9e-11 Score=131.06 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=80.7
Q ss_pred ccCCCceEEEecCCCchhh-HHHHHHHhcCCCcccEEEcCCCCccc-------ccccccCCCCcceEEeecCCCcc-ccc
Q 002187 560 DNVKGLRSLLVKSDEYSWS-IEVLRQLFDKLTCLRTLKLDGSVIIE-------IPTNIEKLLHLKYLNLSCQMEIE-RLP 630 (955)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~-~~~l~~~~~~l~~Lr~L~L~~~~~~~-------lp~~i~~L~~Lr~L~L~~~~~i~-~LP 630 (955)
..+.+|+.|.+.++..... ...++..+...+.|+.|+++++.+.. ++..+..+.+|++|++++|. +. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHH
Confidence 3677799999998875321 12245557788889999999987652 34567789999999999998 54 455
Q ss_pred hhhcCCCC---CCEEeeCCCCCcc-----ccCccccCC-CCCcEeeCCCCC
Q 002187 631 ETLCELYN---LERLNVDSCSNLR-----ELPQGIGKL-RKLMHLENDQTD 672 (955)
Q Consensus 631 ~~i~~L~~---Lq~LdL~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~ 672 (955)
..+..+.+ |++|++++|. +. .++..+..+ ++|+.|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 55555555 9999999987 44 233445666 889999999884
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.97 E-value=2.2e-08 Score=108.76 Aligned_cols=275 Identities=17% Similarity=0.114 Sum_probs=147.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+|+|++..++.+..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 4799999999999988864322 12245568899999999999999999843 2222 12222111111 1122222
Q ss_pred HHHcCCC----CCCCC-hHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHhhc-
Q 002187 257 EALTGSA----SNFGE-FQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACIMG- 330 (955)
Q Consensus 257 ~~l~~~~----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~- 330 (955)
..+.... ++... .......+...+.+.+..+|+|+..+.. .| ...++ +.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHHh
Confidence 3322111 00000 0122334455555555666666653321 11 11111 2455667777654443321
Q ss_pred -CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHH--Hhhhc
Q 002187 331 -STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNI--LESEI 407 (955)
Q Consensus 331 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~--~~~~~ 407 (955)
....+.+++++.++..+++.+.+...+.. --.+....|++.|+|.|-.+..++..+ |... .+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 13468999999999999999887533221 123567889999999997665554432 1111 11000
Q ss_pred hhhhhhhcchhhHHHHhhhcCCHhHHHHHh-hhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHHHHHHHH-HHhhc
Q 002187 408 WEIEEVEKGLLAPLLLSYNELPPKIKQCFT-YCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDIGEEYFN-TLASR 485 (955)
Q Consensus 408 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~-~L~~~ 485 (955)
-.. +.-......+...|..++++.+..+. ....++.+ .+..+.+-... |- ....++..++ .|++.
T Consensus 217 it~-~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INR-DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHc
Confidence 000 00111222355678888887777555 55666533 44443333221 11 1234666677 69999
Q ss_pred cCcccc
Q 002187 486 SFFQDL 491 (955)
Q Consensus 486 ~ll~~~ 491 (955)
+|+...
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999643
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.91 E-value=3e-07 Score=105.85 Aligned_cols=303 Identities=14% Similarity=0.090 Sum_probs=165.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh---ccCC--ceEEEEeCCcccHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK---KKFE--KRMWICVSELFDEF 249 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~ 249 (955)
.+..+.||++++++|...|...-. +.....++.|+|.+|.|||+.++.|.+..... .... .+++|.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 346799999999999999865432 12234678899999999999999998753211 1122 35688887777888
Q ss_pred HHHHHHHHHHcCCCCC-CCChHHHHHHHHHHhc---CceEEEEEeCCCCccccChhhHHhhcc-CCCCCcEEEE--ecCC
Q 002187 250 RIARAIIEALTGSASN-FGEFQSLMQHIQECVQ---RKKFLLVLDDVWNEDYCKWEPFYHCLK-DGLHESKILI--TTRK 322 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~k~~LlVlDdvw~~~~~~~~~l~~~l~-~~~~gs~iiv--Ttr~ 322 (955)
.++..|.+++....+. .....+....+...+. +...+||||+++.-....-+.|...+. ....+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 8999999998543322 2222334444444442 234599999996422111122332222 1224556544 3322
Q ss_pred h--------hHHHhhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCC
Q 002187 323 E--------TVACIMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKN 394 (955)
Q Consensus 323 ~--------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~ 394 (955)
. .+...++ ...+..+|.+.++-.+++..++........+..++-+|+.++..-|-.-.||.++-.+.....
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 1 1111222 234677999999999999998754322233444555555555555666677776655543221
Q ss_pred ----CHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCC---CcccchHHHHHHH--HHcCCccc
Q 002187 395 ----TEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPK---DYRIWKYKLIELW--MAQGYLSE 465 (955)
Q Consensus 395 ----~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~---~~~i~~~~Li~~W--~a~g~i~~ 465 (955)
+.++-..+.+.. ....+.-....||.|.|-.++-+...-+ ...++-..+.... +++-.-..
T Consensus 991 gskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 122222222110 1122334456788887664442322111 2234444443322 23200000
Q ss_pred CCC-CcHHHHHHHHHHHHhhccCccc
Q 002187 466 KGP-KEMEDIGEEYFNTLASRSFFQD 490 (955)
Q Consensus 466 ~~~-~~~~~~~~~~~~~L~~~~ll~~ 490 (955)
.+. ...+ ....|+.+|...++|-.
T Consensus 1061 iGv~plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1061 IGMCSNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred cCCCCcHH-HHHHHHHHHHhcCeEEe
Confidence 011 1223 67778888888887754
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.5e-10 Score=120.46 Aligned_cols=306 Identities=20% Similarity=0.232 Sum_probs=173.8
Q ss_pred CcccEEEcCCCCcc---cccccccCCCCcceEEeecCCCccc--cchhhcCCCCCCEEeeCCCCCccccCc--cccCCCC
Q 002187 590 TCLRTLKLDGSVII---EIPTNIEKLLHLKYLNLSCQMEIER--LPETLCELYNLERLNVDSCSNLRELPQ--GIGKLRK 662 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~---~lp~~i~~L~~Lr~L~L~~~~~i~~--LP~~i~~L~~Lq~LdL~~~~~l~~lp~--~i~~L~~ 662 (955)
..||.|.+.++.-. .+-..-.+++++..|++.+|.+++. +-.--..+++|++|++-.|..++..-- -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35788888887632 2323355778888888888875653 222235678888888888776665321 1245788
Q ss_pred CcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCC
Q 002187 663 LMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNL 742 (955)
Q Consensus 663 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L 742 (955)
|.+|+++.|..+.. .++ +.+ . ....+++.+...++..... +++...-..+.-+
T Consensus 218 L~~lNlSwc~qi~~--~gv------~~~--------------~---rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i 270 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--NGV------QAL--------------Q---RGCKELEKLSLKGCLELEL--EALLKAAAYCLEI 270 (483)
T ss_pred HHHhhhccCchhhc--Ccc------hHH--------------h---ccchhhhhhhhcccccccH--HHHHHHhccChHh
Confidence 88888888854433 111 100 0 0011111111122221110 1111111112223
Q ss_pred CcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCCh--hcccccccEEEEeCCCCC
Q 002187 743 IELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNW--VMSLTNLRVLHLRWCSNC 820 (955)
Q Consensus 743 ~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~--~~~l~~L~~L~L~~~~~~ 820 (955)
..+++..|+. ..+..+...-..+..|+.|..+++....+. +-| ..++++|+.|.+..|...
T Consensus 271 ~~lnl~~c~~---------------lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 271 LKLNLQHCNQ---------------LTDEDLWLIACGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred hccchhhhcc---------------ccchHHHHHhhhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchh
Confidence 3333333311 012223333344567788887777654422 222 126788888888888766
Q ss_pred CcCCC--C-CCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcc
Q 002187 821 EHLPP--L-GKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPR 897 (955)
Q Consensus 821 ~~l~~--l-~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~ 897 (955)
+.... + .+.++|+.|++.+|..+..- .+.... ..+|.|+.|.++.|...++-.. ..+...-.++..
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--------~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~ 402 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS--------RNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEG 402 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhh--hHhhhc--------cCCchhccCChhhhhhhhhhhh-hhhhhccccccc
Confidence 54322 3 35788888888877643211 122222 2789999999998865554411 112223467889
Q ss_pred cceeeeccCcCCC-CCCCCCCCCCCcCeEEEecCCCcccccccCCCccccCCCCCccc
Q 002187 898 LSSLSIVYCPKLK-ALPDHLLQKTTLQRLSIFSCPILKKTKERGEDWPKIRHIPNILI 954 (955)
Q Consensus 898 L~~L~i~~c~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~i~hi~~i~~ 954 (955)
|+.|++.+||.+. ..-+.+..+++|+.+++.+|..+++..- -+-.+|+|++++
T Consensus 403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i----~~~~~~lp~i~v 456 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI----SRFATHLPNIKV 456 (483)
T ss_pred cceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh----HHHHhhCcccee
Confidence 9999999999765 2335677889999999999998877521 123578888875
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=2.9e-07 Score=94.70 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=95.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
.+.+.|+|..|+|||+|++++++. .......+.|+++.... ..... +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhHH---------------------HHhhcc-c
Confidence 356899999999999999999994 33334456677764210 00001 111121 2
Q ss_pred eEEEEEeCCCCcc-ccChhh-HHhhccCC-CCCcEEE-EecCC---------hhHHHhhcCcceEeCCCCChhhHHHHhH
Q 002187 284 KFLLVLDDVWNED-YCKWEP-FYHCLKDG-LHESKIL-ITTRK---------ETVACIMGSTNIISINVLSEMGCWLVFE 350 (955)
Q Consensus 284 ~~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (955)
.-+|||||+|... ...|+. +...+... ..|..+| +|+.. +.+...+.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3489999998642 234653 33333322 2355554 45544 3555556667789999999999999999
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 351 PLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
+.++..+- .--+++..-|++.+.|..-++..+-
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 98864332 1124567788888887766554443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1e-08 Score=98.82 Aligned_cols=129 Identities=26% Similarity=0.248 Sum_probs=50.5
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhc-CCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhh-cCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFD-KLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETL-CELYN 638 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~-~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i-~~L~~ 638 (955)
+..+++.|.+.++....+.. +. .+.+|++|+|++|.+..+. .+..+++|+.|++++|. |+.++..+ ..+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPN 89 (175)
T ss_dssp -------------------S-------TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCc
Confidence 45567888888876433322 33 5778899999999988874 57888999999999988 88887655 46889
Q ss_pred CCEEeeCCCCCccccCc--cccCCCCCcEeeCCCCCCCccccc----CCCCCCCCCccceeEecCc
Q 002187 639 LERLNVDSCSNLRELPQ--GIGKLRKLMHLENDQTDSLRYLPV----GIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 639 Lq~LdL~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~~~ 698 (955)
|++|++++|. +..+-. .+..+++|++|++.+|+. ...+. -+..+++|+.|+...+...
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEccHH
Confidence 9999999887 665432 356788899999988843 22222 2567777887776655443
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.67 E-value=4.3e-07 Score=102.40 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=106.0
Q ss_pred CccccchhHHHH---HHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKE---LVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~---i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
.++||++..+.. +..++.. .....+.++|++|+||||+|+.+++. .... |+.++......+-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 468888877555 6666632 24456788999999999999999883 2222 233322211111122
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE--ecCChh--HH-H
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI--TTRKET--VA-C 327 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~-~ 327 (955)
.+++. .... ..+++.+|++|+++.-.....+.+...+.. |..+++ ||.+.. +. .
T Consensus 79 ~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 22221 1111 246788999999987554455556655543 444444 344322 11 1
Q ss_pred hhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHH
Q 002187 328 IMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIAC 388 (955)
Q Consensus 328 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 388 (955)
.......+.+.+++.++.+.++.+.+....... ..--.+..+.|++.|+|.|..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 222346899999999999999988653211100 012245677899999999977655443
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=1.3e-07 Score=88.54 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=80.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc---cCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK---KFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQEC 279 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (955)
+-+++.|+|.+|+|||++++.+.++..... .-..++|+.+....+...+...|+.+++.......+.+.+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 345899999999999999999998532110 02456799999888999999999999997765555667777888888
Q ss_pred hcCc-eEEEEEeCCCCc-cccChhhHHhhccCCCCCcEEEEecCC
Q 002187 280 VQRK-KFLLVLDDVWNE-DYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 280 l~~k-~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
+... ..+||+|++..- ....++.+.... + ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 7654 459999999654 333334443332 3 556677777664
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3e-08 Score=112.21 Aligned_cols=107 Identities=34% Similarity=0.411 Sum_probs=92.6
Q ss_pred hcCCCcccEEEcCCCCcccccccccCCC-CcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCc
Q 002187 586 FDKLTCLRTLKLDGSVIIEIPTNIEKLL-HLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLM 664 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~~lp~~i~~L~-~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~ 664 (955)
+..++.+..|++.++.+.++|...+.+. +|++|++++|. +..+|..++.+++|+.|++++|. +.++|.....+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 4556889999999999999999888885 99999999999 99998889999999999999998 999998877999999
Q ss_pred EeeCCCCCCCcccccCCCCCCCCCccceeEe
Q 002187 665 HLENDQTDSLRYLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 665 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (955)
.|++++| .+..+|..++.+..|++|.+..+
T Consensus 190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred heeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 9999998 67788887666666777766544
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=1.9e-08 Score=96.99 Aligned_cols=108 Identities=26% Similarity=0.307 Sum_probs=38.8
Q ss_pred hcCCCcccEEEcCCCCccccccccc-CCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCcccc-CCCCC
Q 002187 586 FDKLTCLRTLKLDGSVIIEIPTNIE-KLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIG-KLRKL 663 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~~lp~~i~-~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~-~L~~L 663 (955)
+.+...+|.|+|+++.|..+ +.++ .+.+|+.|+|++|. |+.++. +..+++|++|++++|. +..++..+. .+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcC
Confidence 45566789999999999887 4566 68999999999999 999875 8889999999999998 888876664 69999
Q ss_pred cEeeCCCCCCCcccc--cCCCCCCCCCccceeEecCc
Q 002187 664 MHLENDQTDSLRYLP--VGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 664 ~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~ 698 (955)
++|++++| .+..+. ..+..+++|+.|++..+...
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999988 333332 23455666666666555443
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=3.6e-06 Score=96.94 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=115.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
+++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-...++ +..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 479999999999999985321 244567999999999999998887432111110 00111111111111
Q ss_pred HH-----HcCCCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHH
Q 002187 257 EA-----LTGSASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVA 326 (955)
Q Consensus 257 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 326 (955)
.. +..+.......+++.+.+... ..++.-++|||++...+...|..++..+.......++|+||.+ ..+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00 000000111122222222221 1244558899999876666788888887766667787777766 3343
Q ss_pred Hhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh-HHHHHHHH
Q 002187 327 CIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP-LAAKTIAC 388 (955)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 388 (955)
..+ .-...+.+++++.++..+.+.+.+...+-. --.+..+.|++.++|.. -|+..+-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222 335789999999999999988866432211 12355778999998855 45555433
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=2.9e-09 Score=115.12 Aligned_cols=123 Identities=31% Similarity=0.425 Sum_probs=98.9
Q ss_pred eEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeC
Q 002187 566 RSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVD 645 (955)
Q Consensus 566 r~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~ 645 (955)
...+++.+.+.. +|.-+..|..|..|.|..|.+..+|..+++|..|.||+|+.|+ +..+|..++.| -|+.|.++
T Consensus 78 ~~aDlsrNR~~e----lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFSE----LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred hhhhcccccccc----CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEe
Confidence 344555554322 2333566677888899999999999999999999999999998 99999988877 48999999
Q ss_pred CCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEec
Q 002187 646 SCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVG 696 (955)
Q Consensus 646 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 696 (955)
+|+ ++.+|..++.+.+|.+|+.+.| .+..+|..++.+.+|+.|.+..+.
T Consensus 152 NNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred cCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh
Confidence 988 8999999998899999999888 677888888888888888765544
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.53 E-value=1.5e-06 Score=89.94 Aligned_cols=170 Identities=18% Similarity=0.168 Sum_probs=99.7
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC
Q 002187 182 REKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG 261 (955)
Q Consensus 182 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 261 (955)
.+..++.+.+++.. .....+.|+|..|+|||+||+.+++. ........++++++.-.+.. ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~---~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD---PE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---HH-------
Confidence 34456677766532 24558899999999999999999984 33333445666654322100 01
Q ss_pred CCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcccc-Ch-hhHHhhccC-CCCCcEEEEecCChh---------HHHhh
Q 002187 262 SASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYC-KW-EPFYHCLKD-GLHESKILITTRKET---------VACIM 329 (955)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~ 329 (955)
+...+.+ .-+|||||++.-... .| +.+...+.. ...+.++|+||+... +...+
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1111222 238999999754322 23 334444332 123347888887532 12222
Q ss_pred cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHH
Q 002187 330 GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIAC 388 (955)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 388 (955)
.....++++++++++...++...+-..+- +--.+..+.|++.+.|.|..+.-+..
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 22457899999999999998775432211 11234567777788888877665543
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=98.52 E-value=7.3e-06 Score=94.39 Aligned_cols=256 Identities=17% Similarity=0.166 Sum_probs=144.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.+++|.++.++.+.+|+..... +...+.+.|+|++|+||||+|+.++++.. |+ .+-++++...+. ..+..+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHH
Confidence 35799999999999999865331 12367899999999999999999998431 22 333444443222 223333
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc----cChhhHHhhccCCCCCcEEEEecCCh-hHHH-hh
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY----CKWEPFYHCLKDGLHESKILITTRKE-TVAC-IM 329 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~ 329 (955)
+....... .....++-+||+|+++.-.. ..+..+...+... +..||+|+... .... .+
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhH
Confidence 33221110 00113677999999975322 2345565555532 33466665432 2211 11
Q ss_pred -cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCC---CHHHHHHHHhh
Q 002187 330 -GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKN---TEKEWQNILES 405 (955)
Q Consensus 330 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~---~~~~w~~~~~~ 405 (955)
.....+.+.+++.++....+.+.+...+.... .+....|++.++|-.-.+......+.... +.+.-..+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 23567899999999999888877644332211 35678899999997766654444343321 2333332221
Q ss_pred hchhhhhhhcchhhHHHHhhh-cCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHHH
Q 002187 406 EIWEIEEVEKGLLAPLLLSYN-ELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDIG 475 (955)
Q Consensus 406 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~ 475 (955)
.+.+..++.++..-+. .-+..+...+..+. ++- ..+-.|+.|.+.... ..+++++
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~~--~~~~~~~ 279 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKEY--DDPEDIA 279 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhcccccc--CCHHHHH
Confidence 1122346666665554 33334444332222 222 456789999997643 2344444
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.3e-06 Score=92.92 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=117.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcch----hhhccCCceEEEEe-CCcccHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNV----DVKKKFEKRMWICV-SELFDEFRI 251 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~ 251 (955)
.+++|.+..++.+.+++... .-.....++|+.|+||||+|+.+++.. ....|+|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 46889999899999998532 234577899999999999999888732 12345565555542 22233333
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHHhh-
Q 002187 252 ARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VACIM- 329 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~- 329 (955)
.+++.+.+...+ ..+++-++|+|+++..+...+..+...+.....++.+|++|.+.. +...+
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 233333332211 124555777888766666778899999988778899888886543 22222
Q ss_pred cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 330 GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
.....+.+.++++++....+.+...+ .. .+.++.++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHHH
Confidence 22578999999999998877654311 11 23366788999999876543
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.5e-06 Score=93.22 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=110.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.+++...-...+. ...+..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 478999999999988885421 344678999999999999999987432111110 00000000011111
Q ss_pred HHHc-----CCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhH
Q 002187 257 EALT-----GSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETV 325 (955)
Q Consensus 257 ~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 325 (955)
.... .........+++.. +.+.+ .+++-++|+|++.......++.+...+.......++|++|.+ ..+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 0000 00000011122111 11111 244569999999766555677777777766566777776654 334
Q ss_pred HHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 326 ACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
...+ +....+++.+++.++..+.+.+.+...+.. --.+.+..|++.++|.|-.+..
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 3332 225689999999999998887765432211 1134567799999998864433
No 49
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=3.8e-06 Score=102.19 Aligned_cols=313 Identities=16% Similarity=0.119 Sum_probs=177.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC---Cc---ccHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS---EL---FDEFRI 251 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~---~~~~~~ 251 (955)
.++||+.+++.|...+..... +.-.++.+.|..|||||++++.|.. .+.+.+...+--.+. .+ ....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999876543 3455999999999999999999998 444432211111111 11 112334
Q ss_pred HHHHHHHHcCC-------------------CC-------------C---------CCChH-----HHHHHHHHHhc-Cce
Q 002187 252 ARAIIEALTGS-------------------AS-------------N---------FGEFQ-----SLMQHIQECVQ-RKK 284 (955)
Q Consensus 252 ~~~i~~~l~~~-------------------~~-------------~---------~~~~~-----~~~~~l~~~l~-~k~ 284 (955)
+++++.++... .. + ....+ .....+..+.. .|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 44444444110 00 0 00000 12223333333 469
Q ss_pred EEEEEeCCCCccccChhhHHhhccCCCC----CcEE--EEecCCh--hHHHhhcCcceEeCCCCChhhHHHHhHhhhcCC
Q 002187 285 FLLVLDDVWNEDYCKWEPFYHCLKDGLH----ESKI--LITTRKE--TVACIMGSTNIISINVLSEMGCWLVFEPLAFSG 356 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~----gs~i--ivTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 356 (955)
.++|+||+.-.+....+-+......... -..| +.|.+.. .+-..-.+...+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999943333333333222222110 1123 3333332 112222335789999999999999998876432
Q ss_pred CCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCC------CCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCH
Q 002187 357 KSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSK------NTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPP 430 (955)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 430 (955)
.....+..+.|++|..|.|+-+.-+-..+... .+...|..=.. ........++ +...+..-.+.||.
T Consensus 236 -----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~-~i~~~~~~~~-vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 -----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIA-SLGILATTDA-VVEFLAARLQKLPG 308 (849)
T ss_pred -----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHH-hcCCchhhHH-HHHHHHHHHhcCCH
Confidence 22234568889999999999998888777553 12223322111 1111112222 55568888999999
Q ss_pred hHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHhhccCcccccccCCCcEeE---E-EeCh
Q 002187 431 KIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYA---C-KMHD 506 (955)
Q Consensus 431 ~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~---~-~mHd 506 (955)
..++.+-..|++-. .|+.+.|-..|-. ...+++....+.|....++...+....+.... | -.||
T Consensus 309 ~t~~Vl~~AA~iG~--~F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIGN--RFDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhCc--cCCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 99999999999864 4556666655531 34566777677776666654332222221111 1 3577
Q ss_pred HHHHHHHH
Q 002187 507 IVHDFAQF 514 (955)
Q Consensus 507 lv~d~a~~ 514 (955)
.+++.|-.
T Consensus 377 ~vqqaaY~ 384 (849)
T COG3899 377 RVQQAAYN 384 (849)
T ss_pred HHHHHHhc
Confidence 77776643
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.3e-05 Score=83.49 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=131.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-c-eEEEEeCCcccHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-K-RMWICVSELFDEFRIAR 253 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~ 253 (955)
+..+.+|+++++++...|...-. +....-+.|+|..|+|||+.++.|.+. ++.... . .++|++-...+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34599999999999998865432 122223889999999999999999994 444432 2 68999999999999999
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhc--CceEEEEEeCCCCccccChhhHHhhccCCCC-CcEE--EEecCChhHHHh
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLH-ESKI--LITTRKETVACI 328 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~i--ivTtr~~~v~~~ 328 (955)
.|+++++..........+..+.+.+.+. ++.++||||++..-....-+.+...+..... .++| |..+-+-.....
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997444434455566667777764 5889999999965321111344444443322 4544 333333333322
Q ss_pred hcC-------cceEeCCCCChhhHHHHhHhhhcCCC-CCCCcchHHH-HHHHHHhhcCCChHHHHHHHH
Q 002187 329 MGS-------TNIISINVLSEMGCWLVFEPLAFSGK-STVERENLEE-IGREITRKCKGLPLAAKTIAC 388 (955)
Q Consensus 329 ~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~-~~~~i~~~c~glPlai~~~~~ 388 (955)
+.. ...+..+|-+.+|-..++..++-..- .....++..+ ++...++..|-.-.||..+-.
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 211 22377888999999999888764321 1122333334 444444444445556555443
No 51
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=4.4e-07 Score=90.75 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK 231 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 231 (955)
.||||+++++++...|. .. .....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 21 23456899999999999999999999854333
No 52
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=8.5e-07 Score=82.26 Aligned_cols=120 Identities=23% Similarity=0.242 Sum_probs=79.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
.+++.|.|+.|+||||++++++.+.. ....+++++............ + ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 35899999999999999999987432 335577777665433111000 0 223333334447
Q ss_pred eEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHh------hcCcceEeCCCCChhhH
Q 002187 284 KFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACI------MGSTNIISINVLSEMGC 345 (955)
Q Consensus 284 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 345 (955)
+.+|+||++... .+|......+.+..+..+|++|+.+...... .+....++|.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 788999999653 5688777777666567899999988655532 12245788999988764
No 53
>PTZ00202 tuzin; Provisional
Probab=98.44 E-value=6.1e-06 Score=88.51 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=107.8
Q ss_pred cccCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 171 ISSIDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 171 ~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
..+.+...|+||+.+...+...|.+.+. ...+++.|+|++|+|||||++.+..... + .+++.-.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHH
Confidence 3455677999999999999999865432 2456999999999999999999987322 1 23332222 6799
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHh-----c-CceEEEEEeCCCCccccChhhHH---hhccCCCCCcEEEEecC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECV-----Q-RKKFLLVLDDVWNEDYCKWEPFY---HCLKDGLHESKILITTR 321 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdvw~~~~~~~~~l~---~~l~~~~~gs~iivTtr 321 (955)
+++.++.+|+.... ....++...|++.+ . |++.+||+-=-.- .....+. ..|.....-|+|++---
T Consensus 325 lLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evp 399 (550)
T PTZ00202 325 TLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVP 399 (550)
T ss_pred HHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeeh
Confidence 99999999997432 22233444444433 2 6777777653211 1122211 23455566788888766
Q ss_pred ChhHHHhh---cCcceEeCCCCChhhHHHHhHhh
Q 002187 322 KETVACIM---GSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 322 ~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
.+.+-... .--..|.++.++.++|.++-.+.
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 55433221 22457899999999999887664
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4e-06 Score=95.56 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=113.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.++||.+...+.|.+++.... -...+.++|..|+||||+|+.+++...-.. |+.. ..+..-...+.|.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 479999999999999986332 345778999999999999999887421111 1110 0011111111111
Q ss_pred HHHc-----CCCCCCCChHHHHHHHHH----HhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHH
Q 002187 257 EALT-----GSASNFGEFQSLMQHIQE----CVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVA 326 (955)
Q Consensus 257 ~~l~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 326 (955)
..-. .........+++...+.. -..++.-++|+|++..-+......+...+.....+.++|++|.+ ..+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 000001122222222211 12356668999999766556677777777765566777777755 3333
Q ss_pred Hh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 327 CI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
.. ......+++++++.++....+.+.+...+.. --.+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 2335789999999999999888776433221 1234567799999997755543
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=1.8e-06 Score=82.59 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=73.5
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH
Q 002187 180 VGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL 259 (955)
Q Consensus 180 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 259 (955)
+|++..++.+...+... ....+.|+|.+|+||||+++.+++... ..-..++++.+.+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888542 345788999999999999999998432 222346677665543322221111100
Q ss_pred cCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCC------CCCcEEEEecCChh
Q 002187 260 TGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDG------LHESKILITTRKET 324 (955)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 324 (955)
............+..+||+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999753222222333333322 35778888887643
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=8.5e-07 Score=101.05 Aligned_cols=201 Identities=19% Similarity=0.169 Sum_probs=118.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.+..++.... -...+.++|++|+||||+|+.+++.....+.+....|.|.+...-. .....-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~-~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR-RGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh-cCCCCce
Confidence 468999998888888885432 2345689999999999999999885432222333334432211000 0000000
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecC-ChhHHHhh-
Q 002187 257 EALTGSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTR-KETVACIM- 329 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~- 329 (955)
..+. .......+.+. .+.+.+ .+++-++|+|+++......+..+...+........+|++|. ...+...+
T Consensus 88 ~el~--~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEID--AASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEec--ccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000 00111122221 122222 24566999999987665667788888776555566555554 34443333
Q ss_pred cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH-HHHHHHh
Q 002187 330 GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA-KTIACLL 390 (955)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai-~~~~~~l 390 (955)
.....+++.+++.++....+.+.+...+... -.+....|++.++|.+--+ ..+-.++
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2356899999999999999988765433211 2356788999999988544 3343433
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.5e-06 Score=98.18 Aligned_cols=183 Identities=14% Similarity=0.167 Sum_probs=113.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc-------------------CCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-------------------FEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 237 (955)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+++...-... |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 479999999999998885321 2345579999999999999999984321111 1111
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHH-HhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQE-CVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKI 316 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 316 (955)
+++..+....+. +..++...+.. -..+++-++|||++..........++..+-......++
T Consensus 91 iEidAas~~kVD------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVD------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111111111 11122222211 12366779999999876666777788777665556666
Q ss_pred EEecCC-hhHHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 317 LITTRK-ETVACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 317 ivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
|++|.+ ..+... ......|.+++++.++....+.+.+-..+. .--.+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 665544 444433 233578999999999999998876533211 112356788999999988644443
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.9e-08 Score=103.43 Aligned_cols=215 Identities=18% Similarity=0.159 Sum_probs=129.0
Q ss_pred cccCCCCcceEEeecCCCccccch--hhcCCCCCCEEeeCCCCCccc---cCccccCCCCCcEeeCCCCCCCcccccCCC
Q 002187 608 NIEKLLHLKYLNLSCQMEIERLPE--TLCELYNLERLNVDSCSNLRE---LPQGIGKLRKLMHLENDQTDSLRYLPVGIG 682 (955)
Q Consensus 608 ~i~~L~~Lr~L~L~~~~~i~~LP~--~i~~L~~Lq~LdL~~~~~l~~---lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~ 682 (955)
-=.++..||...|.++. +...+. ....|++++.|||+.|- +.. +-.-...|++|+.|+++.|. +.. .++
T Consensus 116 kQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~---~~~ 189 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNR-LSN---FIS 189 (505)
T ss_pred HhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccccc-ccC---Ccc
Confidence 34467888888888887 776663 56778888888888875 222 22334567788888777662 110 000
Q ss_pred CCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccC
Q 002187 683 ELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGR 762 (955)
Q Consensus 683 ~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~ 762 (955)
+. .. ...++|+.|.|+.|.++
T Consensus 190 s~-------------~~-------------------------------------~~l~~lK~L~l~~CGls--------- 210 (505)
T KOG3207|consen 190 SN-------------TT-------------------------------------LLLSHLKQLVLNSCGLS--------- 210 (505)
T ss_pred cc-------------ch-------------------------------------hhhhhhheEEeccCCCC---------
Confidence 00 00 01235555666655332
Q ss_pred CCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCC--cCCCCCCCCCcceeeecCC
Q 002187 763 RENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCE--HLPPLGKLPSLEDLEILGM 840 (955)
Q Consensus 763 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~ 840 (955)
..++...+..+|+|+.|.+.+|.+.. ....-...+..|+.|+|++|..++ ..+..+.+|.|..|.+..|
T Consensus 211 -------~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 211 -------WKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred -------HHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 12344455567888888888874322 101222357788888888885443 3456888888888888776
Q ss_pred CCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 841 GSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 841 ~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
. +..+..--.+. ......||+|+.|.+..+ +..+|.... .+..+++|+.|.+..++
T Consensus 282 g-i~si~~~d~~s-----~~kt~~f~kL~~L~i~~N-~I~~w~sl~----~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 282 G-IASIAEPDVES-----LDKTHTFPKLEYLNISEN-NIRDWRSLN----HLRTLENLKHLRITLNY 337 (505)
T ss_pred C-cchhcCCCccc-----hhhhcccccceeeecccC-ccccccccc----hhhccchhhhhhccccc
Confidence 5 33332110000 011237999999999887 466665533 45677888888877765
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=8.7e-07 Score=93.16 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=100.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
+.+++|-...+.++++ .+++.-.-.||++|+||||||+.+.. .....| ..+|-..+-.+-++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH
Confidence 3455555555544443 23566677899999999999999998 444444 3333332222222333
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE--ecCChh--H-HHhhc
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI--TTRKET--V-ACIMG 330 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v-~~~~~ 330 (955)
++.. -+....|++.+|.+|.|..-+..+-+.+ ||.-.+|.-|+| ||-++. + .....
T Consensus 93 ~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 2221 1222348999999999965443333333 444456776666 455432 1 12234
Q ss_pred CcceEeCCCCChhhHHHHhHhhhcCCCCCCC--cchH-HHHHHHHHhhcCCChHHH
Q 002187 331 STNIISINVLSEMGCWLVFEPLAFSGKSTVE--RENL-EEIGREITRKCKGLPLAA 383 (955)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~--~~~~-~~~~~~i~~~c~glPlai 383 (955)
-..++.+++|+.++-.+++.+.+........ ...+ ++....++..++|---++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 4679999999999999999884322211111 1111 345666788887765443
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=2.8e-08 Score=101.80 Aligned_cols=260 Identities=20% Similarity=0.205 Sum_probs=144.6
Q ss_pred HHHhcCCCcccEEEcCCCCccc-----ccccccCCCCcceEEeecCC---Cccccchh-------hcCCCCCCEEeeCCC
Q 002187 583 RQLFDKLTCLRTLKLDGSVIIE-----IPTNIEKLLHLKYLNLSCQM---EIERLPET-------LCELYNLERLNVDSC 647 (955)
Q Consensus 583 ~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~---~i~~LP~~-------i~~L~~Lq~LdL~~~ 647 (955)
......+..+..|+|++|.+.. +.+.+.+.++|+.-++++-- ...++|+. +-..+.|++||||+|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3346778889999999998753 44556677788888887532 12244443 334556777777666
Q ss_pred CCccccCcc----ccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccc-cccCCCCCCceEeCC
Q 002187 648 SNLRELPQG----IGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGS-LKKLNLLRQCRIRGL 722 (955)
Q Consensus 648 ~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~-L~~L~~L~~l~i~~~ 722 (955)
-.-...+.. +.++.+|+||++.+| +.....+..++. |..|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~------------------------Glg~~ag~~l~~al~~l~---------- 148 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNC------------------------GLGPEAGGRLGRALFELA---------- 148 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcC------------------------CCChhHHHHHHHHHHHHH----------
Confidence 522222222 344556666666555 222111111110 10000
Q ss_pred CCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCC--CC
Q 002187 723 GDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVV--PK 800 (955)
Q Consensus 723 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~p 800 (955)
......+.+.|+.+....|.+.+.. ...+-..++.+++|+.+.++.|.+...-. .-
T Consensus 149 ---------~~kk~~~~~~Lrv~i~~rNrlen~g-------------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ 206 (382)
T KOG1909|consen 149 ---------VNKKAASKPKLRVFICGRNRLENGG-------------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA 206 (382)
T ss_pred ---------HHhccCCCcceEEEEeecccccccc-------------HHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence 0011234567777777777544332 23445566777888888888876543000 01
Q ss_pred ChhcccccccEEEEeCCCCCCc----C-CCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecc
Q 002187 801 NWVMSLTNLRVLHLRWCSNCEH----L-PPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWS 875 (955)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~ 875 (955)
..+.++++|+.|+|.+|..... + ..+..+|+|+.|++.+|. ++.-|...+... ....+|+|+.|.+.+
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a------l~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA------LKESAPSLEVLELAG 279 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH------HhccCCCCceeccCc
Confidence 1233788888888888842221 1 126677888999998886 443332211110 012589999999888
Q ss_pred cccccccccccccccccccCcccceeeeccCc
Q 002187 876 MKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 876 ~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
|. .+.-.. ..+...+...|.|.+|+|++|.
T Consensus 280 Ne-It~da~-~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 280 NE-ITRDAA-LALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ch-hHHHHH-HHHHHHHhcchhhHHhcCCccc
Confidence 73 221111 0111234568999999999997
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=5.8e-06 Score=93.84 Aligned_cols=194 Identities=17% Similarity=0.151 Sum_probs=113.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEK-RMWICVSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i 255 (955)
.+++|.+..+..+...+.... -...+.++|..|+||||+|+.+++...-...... .-+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 478999999988888775321 2356889999999999999999884321111100 000011100 000111
Q ss_pred HHHHc-----CCCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE-ecCChhH
Q 002187 256 IEALT-----GSASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI-TTRKETV 325 (955)
Q Consensus 256 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 325 (955)
..... .+.......+++...+... ..+++-++|+|+++.-+...|..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 00000 0000111222222222221 235677999999987666778888888876656666654 5555555
Q ss_pred HHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 326 ACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
...+ .....+++++++.++....+.+.+...+... -.+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 5443 3356899999999999999988775433211 1345677899999977444
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=4.9e-06 Score=92.02 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHH-HHHH-
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEF-RIAR- 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~-~~~~- 253 (955)
.+++|++..++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..+.++++...+.. ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 57899999999998888532 334578999999999999999988421 11222 23444443321100 0000
Q ss_pred --HHHHHHcCC-CCCCCChHHHHHHHHHH---h--cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh-h
Q 002187 254 --AIIEALTGS-ASNFGEFQSLMQHIQEC---V--QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE-T 324 (955)
Q Consensus 254 --~i~~~l~~~-~~~~~~~~~~~~~l~~~---l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 324 (955)
.....+... .......+.....++.. . .+.+-+||+||+..-.......+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 00001111122222221 1 1344589999996543333445655555444557788777543 2
Q ss_pred HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 325 VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
+...+ .....+.+.+++.++...++.+.+...+.. --.+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22222 224578899999999999888866433221 1245677888889887655544
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=8.8e-08 Score=95.52 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=15.0
Q ss_pred ccccCcccceeeeccCcCCCCCC
Q 002187 891 EIRIMPRLSSLSIVYCPKLKALP 913 (955)
Q Consensus 891 ~~~~~~~L~~L~i~~c~~l~~lp 913 (955)
.++++|+|++|.+.+|| +..+|
T Consensus 394 ~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred ccccccHHHHHhhcCCC-ccccc
Confidence 45677777777777777 55554
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.39 E-value=9.3e-06 Score=95.45 Aligned_cols=203 Identities=20% Similarity=0.181 Sum_probs=121.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCc---ccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVSEL---FDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~ 250 (955)
++++|++..+..+.+.+... ....+.|+|.+|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999888877432 34469999999999999999998854333333 12345555321 12222
Q ss_pred HHHHH---------------HHHHcCCC----------------CCCCC-hHHHHHHHHHHhcCceEEEEEeCCCCcccc
Q 002187 251 IARAI---------------IEALTGSA----------------SNFGE-FQSLMQHIQECVQRKKFLLVLDDVWNEDYC 298 (955)
Q Consensus 251 ~~~~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~ 298 (955)
+...+ +...+... .+... ....+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111100 00111 134577888899999999998888877777
Q ss_pred ChhhHHhhccCCCCCcEEEE--ecCChh-HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHh
Q 002187 299 KWEPFYHCLKDGLHESKILI--TTRKET-VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITR 374 (955)
Q Consensus 299 ~~~~l~~~l~~~~~gs~iiv--Ttr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 374 (955)
.|+.+...+..+.+...|++ ||++.. +...+ .....+.+.+++.+|.+.++.+.+..... ... .++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78888877777666665665 566432 12221 22346789999999999999987642211 111 234445555
Q ss_pred hcCCChHHHHHHHHH
Q 002187 375 KCKGLPLAAKTIACL 389 (955)
Q Consensus 375 ~c~glPlai~~~~~~ 389 (955)
.+..-+-|+..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 554445555555443
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.2e-06 Score=93.16 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=114.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh-------------------ccCCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK-------------------KKFEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 237 (955)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++...-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 47899999999999888532 133457789999999999999998732110 012222
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKI 316 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 316 (955)
+++.......++ +..++...+... ..+++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 333222222221 112222222211 2356679999999766666677788888776556665
Q ss_pred E-EecCChhHHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh-HHHHHHHHHh
Q 002187 317 L-ITTRKETVACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP-LAAKTIACLL 390 (955)
Q Consensus 317 i-vTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 390 (955)
| +||....+... ......+++.+++.++....+.+.+...+. .--.+....|++.++|.+ -|+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5 45544444433 233578999999999988877775433221 112345677899999966 4555554433
No 66
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.5e-07 Score=97.52 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=112.4
Q ss_pred CceEEEEEEccCCCCcch-hhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc--ccCCCCc
Q 002187 539 KKVFHLMLTLHRGASVPI-SIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN--IEKLLHL 615 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~L~~L 615 (955)
+++|.+++.+...+..+. ...+.|+++|.|+++.+-+..... ...+...+++|+.|+|+.|.+....++ -..+.||
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 577777887776664332 345589999999999987655555 345678999999999999987543222 3478899
Q ss_pred ceEEeecCCCcc--ccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccc--cCCCCCCCCCccc
Q 002187 616 KYLNLSCQMEIE--RLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLP--VGIGELISLRRVS 691 (955)
Q Consensus 616 r~L~L~~~~~i~--~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~ 691 (955)
+.|.|+.|. ++ .+-..+..+++|+.|+|..|..+.........+..|+.|+|++|. +...+ ..++.++.|..|+
T Consensus 200 K~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 200 KQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred heEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 999999998 65 233345678899999999885343332334457789999999884 44555 3467888888888
Q ss_pred eeEecCcc
Q 002187 692 KLVVGGGY 699 (955)
Q Consensus 692 ~~~~~~~~ 699 (955)
+..++...
T Consensus 278 ls~tgi~s 285 (505)
T KOG3207|consen 278 LSSTGIAS 285 (505)
T ss_pred ccccCcch
Confidence 77666544
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.36 E-value=5.7e-07 Score=92.57 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=62.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--ccHHHHHHHHHHHHcCCCCCCCChH------HHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL--FDEFRIARAIIEALTGSASNFGEFQ------SLMQHI 276 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 276 (955)
..++|+|.+|+|||||++.+|++.... +|+..+|+.+++. +++.++++.+...+-....+..... ......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999975544 8999999998877 7899999998443322222211111 122222
Q ss_pred HHH-hcCceEEEEEeCCC
Q 002187 277 QEC-VQRKKFLLVLDDVW 293 (955)
Q Consensus 277 ~~~-l~~k~~LlVlDdvw 293 (955)
..+ -++++.++++|++.
T Consensus 96 ~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 96 KRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHCCCCEEEEEECHH
Confidence 222 25899999999994
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=7.3e-06 Score=93.27 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=113.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc--CCceEEEEeCCcccHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK--FEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-... -.... +..+......+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 479999999999999986432 3446688999999999999998874321000 00000 000000111111
Q ss_pred HHHH-----HcCCCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE-EecCChh
Q 002187 255 IIEA-----LTGSASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL-ITTRKET 324 (955)
Q Consensus 255 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~ 324 (955)
|... +..+.......+++.+.+... ..++.-++|||++...+...+..++..+..-....++| +||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1100 000000111223333322221 13556699999998766667777877776654555654 5555555
Q ss_pred HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 325 VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
+...+ .-...+.++.++.++..+.+.+.+...+.. .-.+..+.|++.++|.|..+..+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55433 235789999999999999888765322211 11345678999999999755444
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=7.5e-06 Score=89.12 Aligned_cols=183 Identities=14% Similarity=0.050 Sum_probs=107.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 255 (955)
.+++|.++.++.+..++... +..-+.++|++|+||||+|+.+++... ...|. .++-+..+...... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 47899998888888776432 334577999999999999999988421 12232 12222223222221 22222
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-cCcc
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-GSTN 333 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~ 333 (955)
+..+...... .-.++.-++|||++..........+...+......+++|+++.. ..+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2222111000 00134669999999765544445566555544456777777644 2222221 2245
Q ss_pred eEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHH
Q 002187 334 IISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAK 384 (955)
Q Consensus 334 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 384 (955)
.++++++++++....+...+-..+-... .+....|++.++|-.-.+.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 7999999999999988887643332111 3457788999988764443
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.33 E-value=1.2e-05 Score=88.12 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=107.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe--CCcccHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICV--SELFDEFRIAR 253 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~ 253 (955)
-.+++|+++.++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..++.+ +...... ...
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHH
Confidence 356899999999999988532 334579999999999999999988421 11121 122222 2221111 112
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh-hHHH-hhcC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE-TVAC-IMGS 331 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~ 331 (955)
+.+..+....+ .-...+-+|++|++..-.......+...+......+++|+++... .+.. ....
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 22222111000 001235589999986543334555666666555567777776432 2211 1122
Q ss_pred cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 332 TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 332 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
...+++++++.++....+.+.+...+... -.+....+++.++|.+--+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 45789999999999888888764332211 134577889999998765433
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.32 E-value=3.9e-06 Score=82.62 Aligned_cols=180 Identities=20% Similarity=0.218 Sum_probs=94.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.+|||.+.-++.+.-++..... .++.+.-+..||++|+||||||+-+++ .....|. +.+...--..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~------- 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKA------- 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SC-------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhH-------
Confidence 36899999888776555432211 234567889999999999999999999 4444442 3332111011
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCC--------C-----------CCcEE
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDG--------L-----------HESKI 316 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~-----------~gs~i 316 (955)
.++...+.. + +++-+|.+|++..-....-+.+..++-++ + +-+-|
T Consensus 90 --------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 --------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp --------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred --------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 111111111 1 23446666777543322222333332221 1 12456
Q ss_pred EEecCChhHHHhhcC-c-ceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHH
Q 002187 317 LITTRKETVACIMGS-T-NIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIAC 388 (955)
Q Consensus 317 ivTtr~~~v~~~~~~-~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 388 (955)
=.|||...+...+.. . -..+++..+.+|-.++..+.+..-+ .+--.+.+.+|++.|.|-|--+.-+-+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 678887655544433 2 2457999999999999988664322 223356789999999999965544433
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.3e-05 Score=90.05 Aligned_cols=181 Identities=17% Similarity=0.160 Sum_probs=113.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchh------------------hh-ccCCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVD------------------VK-KKFEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~F~~~ 237 (955)
.++||.+..++.+.+.+.... -...+.++|..|+||||+|+.+++... +. +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 478999988888888775321 234788999999999999998876211 00 112223
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
+.+..+....+.+ .+++++..... -..++.-++|+|++..-+....+.+...+....+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4444443333322 22222222110 012455689999997655556777877777666667766
Q ss_pred Eec-CChhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 318 ITT-RKETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 318 vTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
++| ....+...+ .....+++.+++.++....+.+.+...+... -.+..+.|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 655 344554433 3367899999999999999888765433211 1345678999998877544
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.4e-05 Score=88.56 Aligned_cols=202 Identities=19% Similarity=0.192 Sum_probs=115.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc-------------------CCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-------------------FEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 237 (955)
.++||.+...+.+...+.... -...+.++|++|+||||+|+.+++...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 579999888888877775321 2346789999999999999999874221110 0012
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
+.+..+....+..+ +.|.+.... .-..+++-++|+|++..-.....+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 22222211111111 111111110 0123456799999996544444566666666544445554
Q ss_pred EecCC-hhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcC-CChHHHHHHHHHhcC--
Q 002187 318 ITTRK-ETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCK-GLPLAAKTIACLLRS-- 392 (955)
Q Consensus 318 vTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlai~~~~~~l~~-- 392 (955)
++|.+ ..+...+ .....+.+.+++.++....+.+.+...+... -.+....|++.++ +++.|+..+-.+...
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~ 227 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWKFSE 227 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 44433 4444333 3356899999999999888888764322211 1345677888775 557777777664432
Q ss_pred -CCCHHHHHHHHh
Q 002187 393 -KNTEKEWQNILE 404 (955)
Q Consensus 393 -~~~~~~w~~~~~ 404 (955)
+-+.+....++.
T Consensus 228 ~~It~e~V~~~l~ 240 (472)
T PRK14962 228 GKITLETVHEALG 240 (472)
T ss_pred CCCCHHHHHHHHc
Confidence 234555555543
No 74
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.29 E-value=1.8e-06 Score=91.68 Aligned_cols=269 Identities=21% Similarity=0.182 Sum_probs=171.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
..+-+.++|.|||||||++-.+.+ ++.-|. .+.+|......+...+.-.+...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 567899999999999999998887 456674 555666666666666666666666654322 2334556677778
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHhhcCcceEeCCCCChh-hHHHHhHhhhcCCCCC-
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACIMGSTNIISINVLSEM-GCWLVFEPLAFSGKST- 359 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~- 359 (955)
++|.++|+||..+- .+.-..+...+-.+...-.|+.|+|.... ......+.+++|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 99999999998431 11122233344455555678888886532 233557778888866 6888987765433222
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHHHhhhchhh-------hhhhcchhhHHHHhhhcCCHhH
Q 002187 360 VERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNILESEIWEI-------EEVEKGLLAPLLLSYNELPPKI 432 (955)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~-------~~~~~~i~~~l~~sy~~L~~~~ 432 (955)
.....-.....+|.++..|.|++|...+...++-. +.+-..-++.....+ ..........+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11233356788999999999999999998887652 222222222211111 1123457889999999999999
Q ss_pred HHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHhhccCccc
Q 002187 433 KQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDIGEEYFNTLASRSFFQD 490 (955)
Q Consensus 433 k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 490 (955)
+--|--++.|...+... ...|.+-|-.... +.-....-+..+++.+++..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhh
Confidence 99999999998766543 3355555432210 01122223455666666543
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.2e-05 Score=93.33 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=113.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.++||.+..++.+.+.+.... -...+.++|..|+||||+|+.+++...-...+. +..+......+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 579999999999988885321 234567999999999999999987432111100 00111111111111
Q ss_pred HHH-----cCCCCCCCChHHHH---HHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecC-ChhHH
Q 002187 257 EAL-----TGSASNFGEFQSLM---QHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTR-KETVA 326 (955)
Q Consensus 257 ~~l-----~~~~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 326 (955)
..- ..........+++. +.+... ..+++-++|||++...+......++..+-......++|++|. ...+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 100 00000011122222 222111 245667999999987666677778777776555566555554 45444
Q ss_pred Hhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 327 CIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
..+ .-...|.+++++.++....+.+.+-..+. ..-.+....|++.++|.+-.+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332 33578999999999999988876532221 1123456789999999886554443
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.1e-05 Score=89.67 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=112.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..+..|..++.... -...+.++|..|+||||+|+.+++...-..... ...+.....-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 478999999999888885431 223578999999999999999988422111000 001111111111111110
Q ss_pred HHHc-CC---CCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE-EecCChhHHHhh-
Q 002187 257 EALT-GS---ASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL-ITTRKETVACIM- 329 (955)
Q Consensus 257 ~~l~-~~---~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~~- 329 (955)
..+. .. ..+..+..++.+.+... ..++.-++|+|++..-+...+..++..+........+| .||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 0000 00 00111222222222221 23556699999998766667888877776544455554 455545554333
Q ss_pred cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHH
Q 002187 330 GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAK 384 (955)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 384 (955)
.-...|.+.+++.++..+.+.+.+...+. .--.+....|++.++|.+--+.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHH
Confidence 33568999999999998888877643221 1123467889999999885443
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=3.7e-08 Score=106.74 Aligned_cols=139 Identities=26% Similarity=0.316 Sum_probs=90.2
Q ss_pred CCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCcccc
Q 002187 550 RGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERL 629 (955)
Q Consensus 550 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~L 629 (955)
.+..+|..+. .+..|..|+++.+..+. +|..+..| -|++|.+++|+++.+|..++.+.+|..||.+.|. +..+
T Consensus 109 ~~r~ip~~i~-~L~~lt~l~ls~NqlS~----lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~sl 181 (722)
T KOG0532|consen 109 CIRTIPEAIC-NLEALTFLDLSSNQLSH----LPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSL 181 (722)
T ss_pred cceecchhhh-hhhHHHHhhhccchhhc----CChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhc
Confidence 3333455555 56666666666554211 22223322 3677777777777777777777777777777777 7777
Q ss_pred chhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCc
Q 002187 630 PETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 630 P~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
|..++.|..|+.|.++.|. +..+|..+. .-.|..|+++.| ++..+|..|.+|+.||+|.+-++...
T Consensus 182 psql~~l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecccC-ceeecchhhhhhhhheeeeeccCCCC
Confidence 7777777777777777776 677777666 345677777655 66677777777777777776665544
No 78
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=1.7e-06 Score=92.47 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=66.8
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc--cHHHHHHHHHHHHcCCCCC
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF--DEFRIARAIIEALTGSASN 265 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~ 265 (955)
++++.+..-. .=....|+|.+|+||||||++||++...+ +|+..+||.+++.. ++.++++.|...+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 4556554322 22368899999999999999999976544 89999999999887 7788888876433222222
Q ss_pred CCChHH-----HHHHHHHH--hcCceEEEEEeCCC
Q 002187 266 FGEFQS-----LMQHIQEC--VQRKKFLLVLDDVW 293 (955)
Q Consensus 266 ~~~~~~-----~~~~l~~~--l~~k~~LlVlDdvw 293 (955)
.....+ ..-...++ -.|++.+|++|++-
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 221111 11112222 26899999999993
No 79
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.25 E-value=1.1e-06 Score=69.35 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=40.8
Q ss_pred CcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCC
Q 002187 590 TCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCS 648 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~ 648 (955)
++|++|++++|.+..+| ..+.++++|++|++++|. ++.+|. .+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45777777777777776 356777777777777776 666663 56777777777777765
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2e-05 Score=91.28 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=112.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcccHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 254 (955)
+++||-+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-.... ...-. ..++.....+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 478999888888888886432 34567899999999999999986632111100 00000 01111111111
Q ss_pred HHHHH-----cCCCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChh
Q 002187 255 IIEAL-----TGSASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKET 324 (955)
Q Consensus 255 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 324 (955)
|...- ..+.......+++.+.+... ..++.-++|||++...+...+..++..+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000 00000111222222222211 12344589999998776667777887776655566666555 4444
Q ss_pred HHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 325 VACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 325 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
+... ......+++++++.++....+.+.+...+... -.+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 4433 23357899999999999988887664332211 1345678889999977555443
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.6e-05 Score=91.79 Aligned_cols=193 Identities=16% Similarity=0.122 Sum_probs=109.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-.... -+..+... ...+.|.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHHh
Confidence 479999999999999986432 34568899999999999999988732111110 00011100 0000000
Q ss_pred HH-----HcCCCCCCCChHHHHHHHHH----HhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHH
Q 002187 257 EA-----LTGSASNFGEFQSLMQHIQE----CVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVA 326 (955)
Q Consensus 257 ~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 326 (955)
.. +..........+.+...+.. -..+++-++|+|++...+......++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000011112222222211 12356668999999765444455677777654445666666644 3333
Q ss_pred Hh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 327 CI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
.. .+....+.+.+++.++....+.+.+-..+... -.+....|++.++|.+.-+..
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHH
Confidence 22 23345788999999999998887664332211 234578899999998855444
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.23 E-value=3.6e-05 Score=79.40 Aligned_cols=148 Identities=15% Similarity=0.081 Sum_probs=88.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..+.|+|..|+|||.|++++++. .......++|+++.+ ....+. +.+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 45999999999999999999984 333334556776432 111111 1111 11 123
Q ss_pred EEEEEeCCCCcc-ccChhh-HHhhccC-CCCCcEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHhHhh
Q 002187 285 FLLVLDDVWNED-YCKWEP-FYHCLKD-GLHESKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 285 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
-+||+||+.... ...|.. +...+.. ..+|..||+|++.. .+...+.....+++++++.++-..++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 489999995421 123432 3332221 12456799999852 12222334568999999999999999987
Q ss_pred hcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 353 AFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
+...+- .--.+....|++.++|-.-++
T Consensus 175 a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 753221 112355677888887665544
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.4e-05 Score=89.45 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=111.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|++..++.+.+++.... -...+.++|+.|+||||+|+.+++... |.-|... ..+......+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCC-CCCcccHHHHHHH
Confidence 478999999999999885432 235688999999999999999987321 1112111 0111111111111
Q ss_pred HHHcC-----CCCCCCChHHHH---HHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChhHH
Q 002187 257 EALTG-----SASNFGEFQSLM---QHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKETVA 326 (955)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~ 326 (955)
..... ........+++. ..+... ..+++-++|+|++..-+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11000 000001122221 111110 12334479999997655556777877776655556665554 444443
Q ss_pred Hh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHHH
Q 002187 327 CI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIAC 388 (955)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~ 388 (955)
.. ......+++.+++.++....+...+...+... -.+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32 23356899999999999988887654322111 13456788999999664 4444444
No 84
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=1.2e-07 Score=94.61 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCE
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLER 641 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~ 641 (955)
...|.+++++++.... +.+...-.+.+|+|++++|.+..+- ++..|++|..||||+|. ++++-..-.+|-|.++
T Consensus 283 Wq~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ----IDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccchhh----hhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 3456777777765322 2333566677777777777776653 36677777777777776 6666555556777777
Q ss_pred EeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccc--cCCCCCCCCCccceeEec
Q 002187 642 LNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLP--VGIGELISLRRVSKLVVG 696 (955)
Q Consensus 642 LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~ 696 (955)
|.|.+|. ++.+ +++.+|-+|..|++++|+ +..+. .+||+++.|+++.+..+.
T Consensus 357 L~La~N~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 357 LKLAQNK-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eehhhhh-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 7777776 6665 456777777777777763 33322 456777777776665544
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.23 E-value=5.7e-06 Score=98.08 Aligned_cols=172 Identities=16% Similarity=0.209 Sum_probs=96.2
Q ss_pred CccccchhHHH---HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKK---ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~---~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
++|+|.+..+. .+.+.+.. +...-+.++|++|+||||+|+.+++. ...+|. .++++. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 46889887764 34455532 24556789999999999999999983 444441 111110 0000
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHh--cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEe--cCCh--hHHH
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECV--QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILIT--TRKE--TVAC 327 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~--~v~~ 327 (955)
+.........+.+ .+++.+|||||++.-....++.+...+. .|+.++++ |.+. .+..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111122222222 2467799999997644444555554443 35555553 3332 1222
Q ss_pred hh-cCcceEeCCCCChhhHHHHhHhhhcCCCC---CCCcchHHHHHHHHHhhcCCChH
Q 002187 328 IM-GSTNIISINVLSEMGCWLVFEPLAFSGKS---TVERENLEEIGREITRKCKGLPL 381 (955)
Q Consensus 328 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~---~~~~~~~~~~~~~i~~~c~glPl 381 (955)
.+ .....+.+++++.++...++.+.+-.... .....--.+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 21 22467999999999999999876531000 00011123456778888877543
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=4.7e-05 Score=84.83 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=110.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh--------------------ccCCc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK--------------------KKFEK 236 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 236 (955)
.+++|.+..++.+.+++... .-...+.++|..|+||||+|+.+.....-. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 47899999999999988532 123467899999999999998887642111 0121
Q ss_pred eEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEE
Q 002187 237 RMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKI 316 (955)
Q Consensus 237 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 316 (955)
.+++..+...... -.+++++.+... -..+++-++|+|++..-.......+...+......+.+
T Consensus 88 ~~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 1222222111111 112222221110 01244558899998654444566677777655556676
Q ss_pred EEecCChh-HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 317 LITTRKET-VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 317 ivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
|++|.+.. +...+ .....+++.++++++...++...+-..+... -.+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 66765432 33222 2346789999999999888887664332211 13567888999999887665443
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=3.7e-05 Score=84.97 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=109.2
Q ss_pred CccccchhHHHHHHHHHhcCCCC----CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSK----EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIA 252 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 252 (955)
++++|.+..++.+.+.+...... +..-...+.++|+.|+||||+|+.+++...-... . +.++... ..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCC----HHH
Confidence 46899999999999999754310 0112456789999999999999988763211100 0 0001000 000
Q ss_pred HHHHHHHcC------CCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecC
Q 002187 253 RAIIEALTG------SASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTR 321 (955)
Q Consensus 253 ~~i~~~l~~------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr 321 (955)
+.+...-.. ........+++.. +.+.. .+++-++|+|++..........+...+.....+..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 000000000 0000111222221 11211 24555888899987665566667777766556666666665
Q ss_pred C-hhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 322 K-ETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 322 ~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
+ ..+...+ .....+.+.+++.++....+.+... . . .+.+..+++.++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5 4444333 3357899999999999988864321 1 1 244678999999999765444
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=2.5e-05 Score=85.09 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=116.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc--cCCceEEEEeCCcccHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK--KFEKRMWICVSELFDEFRIA 252 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~ 252 (955)
....++|.++..+.+...+.... -...+.|+|..|+||||+|+.+.+..--.. .+.... ....+......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHH
Confidence 44679999999999999885432 344688999999999999998887421110 011110 01111111222
Q ss_pred HHHHHH-------HcCC--C-----CCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCC
Q 002187 253 RAIIEA-------LTGS--A-----SNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHE 313 (955)
Q Consensus 253 ~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 313 (955)
+.|... +... . ......+++. .+.+++ .+++-++|+|++...+......+...+......
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 222221 1000 0 0111233333 344444 256679999999876666667777777654444
Q ss_pred cEE-EEecCChhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 314 SKI-LITTRKETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 314 s~i-ivTtr~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
..+ ++|++...+...+ .....+.+.+++.++...++.+.... . . --.+....|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~-~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q-G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4444444443333 22568999999999999999874311 1 1 113446789999999998765544
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=5.5e-05 Score=82.88 Aligned_cols=199 Identities=11% Similarity=0.047 Sum_probs=114.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEE---EEeCCcccHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMW---ICVSELFDEFRI 251 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~~ 251 (955)
...+++|.++..+.+.+.+.... -...+.++|+.|+||+|+|..+.+..--......... ...-..+.....
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 34579999999999999886432 3446889999999999999887763211111000000 000000000011
Q ss_pred HHHHHHHHc-----------CCC---CCCCChHHHHHHHHHHhc-----CceEEEEEeCCCCccccChhhHHhhccCCCC
Q 002187 252 ARAIIEALT-----------GSA---SNFGEFQSLMQHIQECVQ-----RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLH 312 (955)
Q Consensus 252 ~~~i~~~l~-----------~~~---~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 312 (955)
.+.|...-. ... ...-.++++ +.+.+.+. +++-++|+|++...+......+...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111110000 000 011123332 23333332 4567999999987776777778887776656
Q ss_pred CcEEEEecCCh-hHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 313 ESKILITTRKE-TVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 313 gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
++.+|++|... .+...+ .....+.+.+++.++..+++.+.... . + .+....+++.++|.|..+..+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~-~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L-P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C-C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 67677776654 443333 33568999999999999999775311 0 1 1112678999999998665543
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=6e-08 Score=101.54 Aligned_cols=264 Identities=21% Similarity=0.243 Sum_probs=165.8
Q ss_pred CCcceEEeecCCCcc--ccchhhcCCCCCCEEeeCCCCCccccC-ccc-cCCCCCcEeeCCCCCCCcccccC--CCCCCC
Q 002187 613 LHLKYLNLSCQMEIE--RLPETLCELYNLERLNVDSCSNLRELP-QGI-GKLRKLMHLENDQTDSLRYLPVG--IGELIS 686 (955)
Q Consensus 613 ~~Lr~L~L~~~~~i~--~LP~~i~~L~~Lq~LdL~~~~~l~~lp-~~i-~~L~~L~~L~l~~~~~l~~~p~~--i~~l~~ 686 (955)
-.|+.|+++|+..+. .+-....+++|++.|++.+|.++++-- ..+ ..+++|+||++..|..++.+.-. ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468889999987443 344456788999999999998665421 112 45889999999887555443110 112233
Q ss_pred CCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCc
Q 002187 687 LRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENE 766 (955)
Q Consensus 687 L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 766 (955)
|..|+ +.++..+.. ....+...+++.++.+.+.+|. ..
T Consensus 218 L~~lN---------------------------lSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~----e~--------- 255 (483)
T KOG4341|consen 218 LKYLN---------------------------LSWCPQISG--NGVQALQRGCKELEKLSLKGCL----EL--------- 255 (483)
T ss_pred HHHhh---------------------------hccCchhhc--CcchHHhccchhhhhhhhcccc----cc---------
Confidence 33333 333222211 1122333445556666555551 10
Q ss_pred hhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhc--ccccccEEEEeCCCCCCcCCC--C-CCCCCcceeeecCCC
Q 002187 767 EDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVM--SLTNLRVLHLRWCSNCEHLPP--L-GKLPSLEDLEILGMG 841 (955)
Q Consensus 767 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~--~l~~L~~L~L~~~~~~~~l~~--l-~~l~~L~~L~L~~~~ 841 (955)
..+.+...-..++-+.++++..|...++. ..|.- .+..|+.|..++|...++.+. + .+.++|+.|.+.+|.
T Consensus 256 --~le~l~~~~~~~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 256 --ELEALLKAAAYCLEILKLNLQHCNQLTDE--DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred --cHHHHHHHhccChHhhccchhhhccccch--HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 11122222334556677777777666532 22222 688999999999977665433 3 468999999999999
Q ss_pred CceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCC-----CCCC
Q 002187 842 SVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKAL-----PDHL 916 (955)
Q Consensus 842 ~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-----p~~~ 916 (955)
.+...+....+. ++|.|+.+++..|....+-.. ...-.++|.|+.|.++.|..++.- ..+-
T Consensus 332 ~fsd~~ft~l~r----------n~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 332 QFSDRGFTMLGR----------NCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred hhhhhhhhhhhc----------CChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 877666555443 789999999988754433322 113458999999999999866543 3344
Q ss_pred CCCCCcCeEEEecCCCcccc
Q 002187 917 LQKTTLQRLSIFSCPILKKT 936 (955)
Q Consensus 917 ~~l~~L~~L~l~~c~~l~~~ 936 (955)
.+...|+.+++.+||.+.+.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred ccccccceeeecCCCCchHH
Confidence 56678999999999998876
No 91
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.4e-05 Score=89.58 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=110.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc-------------------cCCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-------------------KFEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 237 (955)
.++||-+..++.+.+++.... -...+.++|+.|+||||+|+.+++...-.. .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 479999999999999995432 234578999999999999999887432111 11112
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
+.+..+....++++ +++++.+... -..++.-++|+|++..-+......+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 23322222222221 2222211110 113556689999998766666777777777655567666
Q ss_pred EecC-ChhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 318 ITTR-KETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 318 vTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
++|. ...+...+ .....+++++++.++....+.+.+-..+... -.+....|++.++|.+--+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 6554 33443322 2356789999999988777666553322111 123466788899998755443
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.16 E-value=5.8e-05 Score=75.42 Aligned_cols=91 Identities=12% Similarity=0.144 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh-hHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCC
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE-TVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKST 359 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 359 (955)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999997655556777888887665667777777643 332222 23568999999999998888776 1
Q ss_pred CCcchHHHHHHHHHhhcCCChHH
Q 002187 360 VERENLEEIGREITRKCKGLPLA 382 (955)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~glPla 382 (955)
.. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 35588899999998853
No 93
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.16 E-value=1.5e-06 Score=98.45 Aligned_cols=98 Identities=28% Similarity=0.424 Sum_probs=52.8
Q ss_pred cccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCC
Q 002187 591 CLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQ 670 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (955)
+|+.|+++++.+..+|..++.+++|+.|++++|. +..+|...+.+.+|+.|++++|. +..+|..+..+..|+.|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence 5555555555555555555555555555555555 55555544455555555555555 555555444444555555555
Q ss_pred CCCCcccccCCCCCCCCCccc
Q 002187 671 TDSLRYLPVGIGELISLRRVS 691 (955)
Q Consensus 671 ~~~l~~~p~~i~~l~~L~~L~ 691 (955)
|. ....+..+.+++++..|.
T Consensus 219 N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 219 NS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred Cc-ceecchhhhhcccccccc
Confidence 42 233344445555555444
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.2e-05 Score=86.69 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE-eCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC-VSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 255 (955)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-...++...|.. +...+..-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 478999998888888885321 233577899999999999999887432111111111110 01111111111111
Q ss_pred HHHHcC-----CCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChh
Q 002187 256 IEALTG-----SASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKET 324 (955)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 324 (955)
...... ........+++.+ +.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 111000 0001111233332 22223 2455688999997655556788888887666677766555 4444
Q ss_pred HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 325 VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
+...+ .....+++.++++++....+...+-..+.. --.+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~----i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS----VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 44332 224578999999999988887765322211 1235678899999997754433
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=3.5e-06 Score=99.95 Aligned_cols=93 Identities=28% Similarity=0.388 Sum_probs=66.4
Q ss_pred cccEEEcCCCCcc-cccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCC
Q 002187 591 CLRTLKLDGSVII-EIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEND 669 (955)
Q Consensus 591 ~Lr~L~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (955)
.++.|+|++|.+. .+|..+++|.+|++|+|++|.....+|..++.+++|++|+|++|.....+|..+.+|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777764 467777777778888887777233677777777788888887777444677777777778888777
Q ss_pred CCCCCcccccCCCC
Q 002187 670 QTDSLRYLPVGIGE 683 (955)
Q Consensus 670 ~~~~l~~~p~~i~~ 683 (955)
+|.....+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 77655566766654
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.13 E-value=5.2e-05 Score=78.27 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=106.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.+.+++|.+.-+..+++ ++.+.-+.+||++|+||||||+.+.+... .+ ...||..|-...-.+-.++
T Consensus 142 GQ~hlv~q~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 142 GQSHLVGQDGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRD 208 (554)
T ss_pred chhhhcCcchHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHH
Confidence 34455555444333332 34666788999999999999999998433 22 1557777765554455555
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE--ecCChh---HHHhh
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI--TTRKET---VACIM 329 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~---v~~~~ 329 (955)
|+++-.. ...+.++|.+|.+|.|..-...+-+ .+||.-.+|+-++| ||-+.. .+..+
T Consensus 209 ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 209 IFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHH
Confidence 5554321 1235678999999999543222222 24566667776555 565543 22334
Q ss_pred cCcceEeCCCCChhhHHHHhHhhhc---CCCC---CCCcc---hHHHHHHHHHhhcCCChH
Q 002187 330 GSTNIISINVLSEMGCWLVFEPLAF---SGKS---TVERE---NLEEIGREITRKCKGLPL 381 (955)
Q Consensus 330 ~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~---~~~~~---~~~~~~~~i~~~c~glPl 381 (955)
....++.|+.|+.++-..++.+... .... ..+.+ --..+.+-++..|.|-.-
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 4567899999999999998887432 1111 11111 123456667777777553
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=3.3e-06 Score=100.22 Aligned_cols=105 Identities=22% Similarity=0.324 Sum_probs=70.9
Q ss_pred ceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcc-cccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEe
Q 002187 565 LRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVII-EIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLN 643 (955)
Q Consensus 565 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~Ld 643 (955)
++.|.+.++... ..++..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++|+
T Consensus 420 v~~L~L~~n~L~---g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLR---GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCcc---ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 566666665532 223444677777888888777765 5677777778888888877773346777777778888888
Q ss_pred eCCCCCccccCccccCC-CCCcEeeCCCCC
Q 002187 644 VDSCSNLRELPQGIGKL-RKLMHLENDQTD 672 (955)
Q Consensus 644 L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~ 672 (955)
|++|.....+|..+..+ .++..+++.+|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 87777555677766553 456666666664
No 98
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=9.6e-07 Score=90.75 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=53.1
Q ss_pred cCCCceEEEecCCCchh-hHHHHHHHhcCCCcccEEEcCCCCc----ccccc-------cccCCCCcceEEeecCCCcc-
Q 002187 561 NVKGLRSLLVKSDEYSW-SIEVLRQLFDKLTCLRTLKLDGSVI----IEIPT-------NIEKLLHLKYLNLSCQMEIE- 627 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~-~~~~l~~~~~~l~~Lr~L~L~~~~~----~~lp~-------~i~~L~~Lr~L~L~~~~~i~- 627 (955)
.+..+..++++++.+.. -...+...+.+.+.||+-++++--. .++|+ .+-.+++|++|+||+|- +.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-FGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-cCc
Confidence 45666777777776421 1223344566777777777776431 22332 34456688888888775 32
Q ss_pred ----ccchhhcCCCCCCEEeeCCCC
Q 002187 628 ----RLPETLCELYNLERLNVDSCS 648 (955)
Q Consensus 628 ----~LP~~i~~L~~Lq~LdL~~~~ 648 (955)
.+-.-+.++++|++|.|.+|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC
Confidence 233346678888888888886
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=4.5e-05 Score=88.65 Aligned_cols=198 Identities=15% Similarity=0.150 Sum_probs=113.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCcccHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE--KRMWICVSELFDEFRIARA 254 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~ 254 (955)
.+++|.+..++.+.+.+.... -...+.++|..|+||||+|+.+++...-..... ...+-.+.. -.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 479999999999999886432 244688999999999999999988432111110 000101111 011111
Q ss_pred HHHHHcC-----CCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChh
Q 002187 255 IIEALTG-----SASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKET 324 (955)
Q Consensus 255 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 324 (955)
|...-.. ........+++...+... ..+++-++|+|++........+.+...+..-...+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 000111223322221111 12455589999997655555677777776655667766555 4444
Q ss_pred HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 325 VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
+...+ .....+++..++.++....+.+.+-..+... -.+....|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44333 2356899999999999998888764332211 12457788999999886654433
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=6.8e-05 Score=77.51 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=88.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
....+.|+|..|+|||+||+.+++... ... ...+++++..... .+ ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~----------~~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL----------AF------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH----------HH------------------hhc-c
Confidence 345788999999999999999998432 111 2344555433110 00 011 2
Q ss_pred ceEEEEEeCCCCccccChhhHHhhccCC-CCCc-EEEEecCChhHHH--------hhcCcceEeCCCCChhhHHHHhHhh
Q 002187 283 KKFLLVLDDVWNEDYCKWEPFYHCLKDG-LHES-KILITTRKETVAC--------IMGSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 283 k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
..-+||+||+...+...-+.+...+... ..+. .||+|++...... .+.....++++++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347899999643322223344444321 2334 4677766533221 2222468899999998877777654
Q ss_pred hcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHh
Q 002187 353 AFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLL 390 (955)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 390 (955)
+-..+ . .--++..+.+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~-v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG-L---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC-C---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32211 1 1123567778888999988877666554
No 101
>PF14516 AAA_35: AAA-like domain
Probab=98.11 E-value=0.00026 Score=77.20 Aligned_cols=202 Identities=15% Similarity=0.177 Sum_probs=120.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-----ccHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-----FDEF 249 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 249 (955)
+.+--|+|...-+++.+.|..+.. .+.|.|+-.+|||+|...+.+..+.. .+ ..+++++... .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G~-------~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPGS-------YIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCCC-------EEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 344567888677777877765432 89999999999999999998844322 33 4557776542 2455
Q ss_pred HHHHHHHHHHcC----CCC-------CCCChHHHHHHHHHHh-c--CceEEEEEeCCCCccc--cChhhHHhhccC---C
Q 002187 250 RIARAIIEALTG----SAS-------NFGEFQSLMQHIQECV-Q--RKKFLLVLDDVWNEDY--CKWEPFYHCLKD---G 310 (955)
Q Consensus 250 ~~~~~i~~~l~~----~~~-------~~~~~~~~~~~l~~~l-~--~k~~LlVlDdvw~~~~--~~~~~l~~~l~~---~ 310 (955)
+.++.++..+.. ... ...........+.+++ . +++.+|+||+++.-.. .-.+++...++. .
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 566666555542 210 0112233444455543 2 6899999999964221 112233333321 1
Q ss_pred -C----CCcEEEEecCChh---HHHh----hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC
Q 002187 311 -L----HESKILITTRKET---VACI----MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG 378 (955)
Q Consensus 311 -~----~gs~iivTtr~~~---v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 378 (955)
. ..+-.++...+.. .... ......++|++++.+|...|..++-.. .. ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCC
Confidence 1 1111122222111 1111 122457899999999999999876321 11 1227889999999
Q ss_pred ChHHHHHHHHHhcCC
Q 002187 379 LPLAAKTIACLLRSK 393 (955)
Q Consensus 379 lPlai~~~~~~l~~~ 393 (955)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998664
No 102
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=3.8e-05 Score=78.49 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=86.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
.+.+.|+|..|+|||+|++.+++.. ...+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 3568999999999999999988742 12244321 1111111111 11
Q ss_pred eEEEEEeCCCCccccChhhHHhhccC-CCCCcEEEEecCC---------hhHHHhhcCcceEeCCCCChhhHHHHhHhhh
Q 002187 284 KFLLVLDDVWNEDYCKWEPFYHCLKD-GLHESKILITTRK---------ETVACIMGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 284 ~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
-+|++||+.... ..-+.+...+.. ...|..||+|++. +.+...+....++++++++.++-.+++++.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995421 111223333321 1235678888874 3344445666899999999999999999887
Q ss_pred cCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 354 FSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
...+- . --+++..-|++.+.|..-++..
T Consensus 167 ~~~~~-~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQL-Y---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCC-C---CCHHHHHHHHHHhhhhHHHHHH
Confidence 43221 1 1245677788888887766654
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=0.00013 Score=78.48 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=132.1
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.+..++||+.+++.+.+|+...-. .....-+.|.|.+|.|||.+...|+.+..-...=..++++.+-.-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456899999999999999876542 345567889999999999999999986432222134578887776778888888
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCc--eEEEEEeCCCCccccChhhHHhhccC-CCCCcEEEEecCChhH------
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRK--KFLLVLDDVWNEDYCKWEPFYHCLKD-GLHESKILITTRKETV------ 325 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v------ 325 (955)
|...+...........+....+.++.++. -+|+|+|.++.-....-..+...|.. .-+++|+|+.---..+
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88887322212222245566666666553 58999999864222222223333322 2356666654322111
Q ss_pred -HHhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCC-CCcchHHHHHHHHHhhcCCChHHHHHHHHHh
Q 002187 326 -ACIM----GSTNIISINVLSEMGCWLVFEPLAFSGKST-VERENLEEIGREITRKCKGLPLAAKTIACLL 390 (955)
Q Consensus 326 -~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 390 (955)
.... .....+..+|-+.++-.++|..+.-..... ..+..++-.|++++.-.|.+--|+-+.-+.+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 124577889999999999999886433221 1223444445555555555666665555444
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.9e-05 Score=86.24 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=113.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.|.+.+.... -...+.++|..|+||||+|+.+++...-....+. ..++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 478999888888888885321 2456778999999999999999874321111000 0111111111111
Q ss_pred HHHcC-----CCCCCCChHHHHHHHHHH-----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhH
Q 002187 257 EALTG-----SASNFGEFQSLMQHIQEC-----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETV 325 (955)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 325 (955)
..... ........+++. .+.+. ..+++-+||+|++.......+..|...+........+|++|.. ..+
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred cCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 10000 000001122211 12221 2356669999999766555667787777654445556665544 444
Q ss_pred HHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh-HHHHHHHHHh
Q 002187 326 ACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP-LAAKTIACLL 390 (955)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~l 390 (955)
...+ .....+++++++.++....+...+...+... -.+..+.|++.++|.+ .|+..+..++
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 3346889999999999988887664332211 1345778889999854 6777776554
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=0.00015 Score=74.97 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=89.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...+..+.+. . -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~-~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q-L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-C
Confidence 47899999999999999999984 333333455666543100 0011111111 1 1
Q ss_pred EEEEEeCCCCcc-ccChhh-HHhhccCC-CCC-cEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHhHh
Q 002187 285 FLLVLDDVWNED-YCKWEP-FYHCLKDG-LHE-SKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 285 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
-+|++||+.... ...|+. +...+... ..| .++|+||+.. .+...+....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 388999995422 134543 22332211 123 4689998754 2333445567999999999999999888
Q ss_pred hhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 352 LAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
++...+ . .--+++..-|++.+.|..-++..+-
T Consensus 179 ~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 179 RARLRG-F---ELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 664322 1 1124567778888887665554433
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=6e-05 Score=87.00 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc-------------------cCCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-------------------KFEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 237 (955)
.+++|.+..++.+.+++.... -...+.++|..|+||||+|+.+.+...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 478999999999999886432 234567999999999999999877421110 11112
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
+++..+....+.. .+++++..... -..+++-++|+|++...+......+...+......+.+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 2222221111111 11222211100 013566699999997655555667777776655566666
Q ss_pred EecCC-hhHHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHHHH
Q 002187 318 ITTRK-ETVACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIACL 389 (955)
Q Consensus 318 vTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~ 389 (955)
++|.+ +.+... ......+++++++.++....+.+.+...+.. --.+....|++.++|.+- |+..+-.+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55543 333322 2224689999999999988887765332211 123456778999999775 44444333
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.4e-06 Score=66.48 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=51.3
Q ss_pred CCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCC
Q 002187 613 LHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTD 672 (955)
Q Consensus 613 ~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 672 (955)
++|++|++++|. +..+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999998 999995 68999999999999988 777765 57899999999999883
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.05 E-value=3.4e-05 Score=85.71 Aligned_cols=180 Identities=18% Similarity=0.184 Sum_probs=99.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc
Q 002187 175 DESEIVGREKEKKELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD 247 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 247 (955)
...++.|+++.+++|.+.+...-.. +-...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457999999999998877432110 1123456899999999999999999983 33333 22221
Q ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc-----------ccChhhHHhhc---cC--C
Q 002187 248 EFRIARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED-----------YCKWEPFYHCL---KD--G 310 (955)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l---~~--~ 310 (955)
..+ .....+ ........+.+.. ...+.+|+||+++.-. ......+...+ .. .
T Consensus 190 -~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111 111100 0111122222222 3456899999986421 01112222222 21 1
Q ss_pred CCCcEEEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 311 LHESKILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 311 ~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
..+.+||.||...... ..+ .-...+.++..+.++..++|..++.+..-. ..-+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 3466788888753221 111 124578999999999999998877443211 1122 345667776654
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=8.5e-05 Score=89.39 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=113.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-...... ..+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 478999999999999986432 2345789999999999999999874321111100 0000000011110
Q ss_pred HH-------HcCCCCCCCChHHHHHHHHH----HhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChh
Q 002187 257 EA-------LTGSASNFGEFQSLMQHIQE----CVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKET 324 (955)
Q Consensus 257 ~~-------l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 324 (955)
.. +..+......++++.+...+ -..++.-++|||++.......+..|+..+..-...+.+|++| ....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000001112222221111 123555588999998777777888888888766666666555 4444
Q ss_pred HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH-HHHHHHh
Q 002187 325 VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA-KTIACLL 390 (955)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai-~~~~~~l 390 (955)
+...+ .....|++..++.++...++.+.+-..+.. --.+....|++.++|.+..+ ..+-.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 54433 336789999999999988887755322211 11334577899999988444 3343433
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00011 Score=84.97 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=114.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.|..++... .-...+.++|..|+||||+|+.+++...-....+ +-.+. .-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg----~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCG----VCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccc----ccHHHHHhh
Confidence 47999999999999998542 1234568999999999999999887422111100 00011 001111111
Q ss_pred HHH-------cCCCCCCCChHH---HHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE-ecCChh
Q 002187 257 EAL-------TGSASNFGEFQS---LMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI-TTRKET 324 (955)
Q Consensus 257 ~~l-------~~~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~ 324 (955)
..- ..+.......++ +...+... ..+++-++|+|++..-+......|+..+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 000 000000011222 22222111 134556899999977666677778888776555666555 444455
Q ss_pred HHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHHHHhc
Q 002187 325 VACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIACLLR 391 (955)
Q Consensus 325 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~~l~ 391 (955)
+...+ .....+++.+++.++..+.+.+.+...+... -.+....|++.++|-+- |+..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44433 3357899999999999888877654332211 13456778899999774 5555555443
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.01 E-value=1.7e-05 Score=85.58 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--ccHHHHHHHHHHHHcCCCCCCCChH------HHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL--FDEFRIARAIIEALTGSASNFGEFQ------SLMQHI 276 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 276 (955)
..++|+|.+|.|||||++.+++.... ++|+..+||.+.+. .++.++++.+...+-....+..... .+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 47899999999999999999996543 37999999999976 7899999998654433322222111 112222
Q ss_pred HHH-hcCceEEEEEeCCC
Q 002187 277 QEC-VQRKKFLLVLDDVW 293 (955)
Q Consensus 277 ~~~-l~~k~~LlVlDdvw 293 (955)
... -+|++.+|++|++.
T Consensus 248 e~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHcCCCeEEEEEChh
Confidence 222 25899999999994
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.01 E-value=5.9e-05 Score=76.68 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=118.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceE-EEEeCCcccHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRM-WICVSELFDEFRIAR 253 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~ 253 (955)
.-.+++|.+..++-+.+.+.. ....+...+|++|.|||+-|+.++...--.+.|.+++ =.++|..-... +.+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 345789999999999998864 3567889999999999999998887433344565543 33444332221 100
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHh--cCce-EEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECV--QRKK-FLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM 329 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 329 (955)
.= ..+.+.+........ .-++ -.||||+++....+.|..++..+.+....++.|+.+.. ..+...+
T Consensus 107 ~K----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 EK----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hh----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 00 001111110000000 0123 37899999988889999999998887777776555543 3332222
Q ss_pred -cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh-HHHHHHH
Q 002187 330 -GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP-LAAKTIA 387 (955)
Q Consensus 330 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~ 387 (955)
.-..-|..++|.+++...-++..+-..+-.. -.+..+.|++.++|-- -|+.++-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2245788999999999888887774433322 2345677899998843 3444443
No 113
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00016 Score=85.17 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=112.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.+..++.... -...+.++|..|+||||+|+.+++.......+. -...++.....+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 479999999999988885431 234567999999999999999987421111000 001111222223332
Q ss_pred HHHcCC-----CCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhH
Q 002187 257 EALTGS-----ASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETV 325 (955)
Q Consensus 257 ~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 325 (955)
.....+ .......+++.+ +.+.+ .+++-++|+|++..-.....+.+...+......+.+|++|.. ..+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 211110 001112222222 22211 245668999999655445566777777665556666666543 333
Q ss_pred HHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 326 ACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
...+ .....+.++.++.++....+.+.+...+... -.+....|++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 2346788999999999888887764332211 1356778999999988655443
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00017 Score=83.97 Aligned_cols=202 Identities=14% Similarity=0.170 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE-eCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC-VSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 255 (955)
.+++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.+.+...-...++...|-. +...+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 478999999998888885321 234578999999999999998887432211111011111 00111111111111
Q ss_pred HHHHcC-----CCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChhH
Q 002187 256 IEALTG-----SASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKETV 325 (955)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 325 (955)
...-.. ........+++...+... ..+++-++|+|++........+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000111233333322222 23455588999997655556677888877655556655444 44444
Q ss_pred HHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHH
Q 002187 326 ACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIA 387 (955)
Q Consensus 326 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 387 (955)
... ......+++.+++.++....+.+.+...+... -.+.++.|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 433 33467899999999998888776553322111 13457789999999554 444443
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0002 Score=79.90 Aligned_cols=186 Identities=15% Similarity=0.172 Sum_probs=107.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh------ccCCce-EEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK------KKFEKR-MWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~-~wv~vs~~~~~~ 249 (955)
.+++|.+...+.+.+.+... .-...+.++|+.|+||||+|+.+.+...-. ..|+.. +-+......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 47899999999999988532 134578899999999999999987742110 112111 11111111111
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec-CChhHHHh
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT-RKETVACI 328 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~ 328 (955)
+..+.+++++... -..+++-++|+|++.......+..+...+......+.+|++| ....+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111222211100 012445589999986544445666766665544455565555 33333322
Q ss_pred -hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHHH
Q 002187 329 -MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIAC 388 (955)
Q Consensus 329 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~ 388 (955)
......++++++++++....+...+...+-.. -.+..+.+++.++|.+- ++..+-.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23345799999999999988887664333211 13567788889998655 4444443
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.96 E-value=0.00019 Score=74.00 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=91.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 357899999999999999999884 332223466776432 1111 01 122222222
Q ss_pred eEEEEEeCCCCcc-ccChhh-HHhhccC-CCCCcEEEEecCChhH---------HHhhcCcceEeCCCCChhhHHHHhHh
Q 002187 284 KFLLVLDDVWNED-YCKWEP-FYHCLKD-GLHESKILITTRKETV---------ACIMGSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 284 ~~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
. +||+||+.... ...|+. +...+.. ..+|..||+|++...- ...+....++++++++.++-..+++.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899996321 234543 4444422 1245678888875321 12223346799999999999999986
Q ss_pred hhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 352 LAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
++...+- ..+ +++..-|++.+.|-.-.+..+-
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 6643221 111 4667778888887765554443
No 117
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.96 E-value=5e-05 Score=83.44 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=77.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 46888999999999999643 2588899999999999999998654445678888999999888766554321
Q ss_pred HHHcCCCCCCCCh-HHHHHHHHHHhc--CceEEEEEeCCCCccccC-hhhHHhhcc
Q 002187 257 EALTGSASNFGEF-QSLMQHIQECVQ--RKKFLLVLDDVWNEDYCK-WEPFYHCLK 308 (955)
Q Consensus 257 ~~l~~~~~~~~~~-~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~-~~~l~~~l~ 308 (955)
....+..-. ....+.+.+... +++++||+|++...+... +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 111111100 112222222222 478999999996544332 344444343
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00019 Score=72.31 Aligned_cols=177 Identities=23% Similarity=0.215 Sum_probs=99.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+|+|.++.++++.=++..... .++.+--|.++|++|.||||||.-+++. +...+. ++.+....-..=+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 5799999988888777754432 4556788999999999999999999994 333321 11111111111111222
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccC--------CCCC-----------cEEE
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKD--------GLHE-----------SKIL 317 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~g-----------s~ii 317 (955)
..+. +.=++.+|.+..-....-+-+..+..+ .+++ +-|=
T Consensus 99 t~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 2221 122344555533221111111111111 1222 3455
Q ss_pred EecCChhHHHhhcC--cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 318 ITTRKETVACIMGS--TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 318 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
-|||.-.+...+.. .-+.+++.-+.+|-.++..+.+..-+- +--++.+.+|+++..|-|--+.-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHH
Confidence 68887544433322 346789999999999999887632221 222456889999999999644333
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.0003 Score=72.94 Aligned_cols=204 Identities=16% Similarity=0.121 Sum_probs=122.4
Q ss_pred Cccccch---hHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCcccHH
Q 002187 177 SEIVGRE---KEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK----FEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~---~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~ 249 (955)
+.++|-. +.++.+.+.|..+. .....-+.|||.+|.|||++++++....-.... --.++.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3455543 34556666665543 345667999999999999999998864211110 0146778888999999
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC-ceEEEEEeCCCCc------cccChhhHHhhccCCCCCcEEEEecCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQR-KKFLLVLDDVWNE------DYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
.+...|+.+++...........+.......++. +--+||+|++.+- .....-.....+.+.-.-+-|.|-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998766666666666666666654 3448899999541 111122223334344445556666654
Q ss_pred hhHHHhh-----cCcceEeCCCCChhhHHH-HhHhh--hcCCCCCCCcchHHHHHHHHHhhcCCChHHHH
Q 002187 323 ETVACIM-----GSTNIISINVLSEMGCWL-VFEPL--AFSGKSTVERENLEEIGREITRKCKGLPLAAK 384 (955)
Q Consensus 323 ~~v~~~~-----~~~~~~~l~~L~~~~~~~-lf~~~--~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 384 (955)
-.-+-.. +-..++.|+.-..++-.. |+... ...-.... .-...++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHH
Confidence 3222111 114567777777655443 43221 11111111 22346789999999999874443
No 120
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00038 Score=79.41 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=107.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh-c------------------cCCce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK-K------------------KFEKR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~F~~~ 237 (955)
.+++|.+..++.+.+++.... -...+.++|..|+||||+|+.++....-. . .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 478999999999999885432 23456789999999999999987732100 0 01111
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEE
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKI 316 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 316 (955)
+++..+....+. +...+...+... ..+++-++|+|++..-.....+.+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222211111111 111111111111 1356669999999755444566677777665555555
Q ss_pred EEec-CChhHHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 317 LITT-RKETVACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 317 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
|++| +...+... ......+.+.+++.++....+.+.+-..+-.. -.+....|++.++|.+-.+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 44444332 23356899999999999888887654322211 13456778888999776554443
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=0.00049 Score=72.26 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=105.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.++.+.+|+.++..+...+...+. .-+.+|.|+|-.|.|||.+.+++.+... -..+|+++-+.++.+-++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 356889999999999988865432 2456678999999999999999999542 23689999999999999999
Q ss_pred HHHHHcCCCCC--CC-----ChHHHHHHHHH--Hhc--CceEEEEEeCCCCccccChhhH-Hhhc---c--CCCCCcEEE
Q 002187 255 IIEALTGSASN--FG-----EFQSLMQHIQE--CVQ--RKKFLLVLDDVWNEDYCKWEPF-YHCL---K--DGLHESKIL 317 (955)
Q Consensus 255 i~~~l~~~~~~--~~-----~~~~~~~~l~~--~l~--~k~~LlVlDdvw~~~~~~~~~l-~~~l---~--~~~~gs~ii 317 (955)
|+.+......+ .. .....+..+.+ ... ++.++||||+++.- .+.+.+ ...+ . -..+ .-+|
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~-~i~i 152 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEP-TIVI 152 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCC-ceEE
Confidence 99998522111 11 11222333333 112 46899999999532 222221 1111 1 1122 3344
Q ss_pred EecCChhHHHh---hcCc--ceEeCCCCChhhHHHHhHhh
Q 002187 318 ITTRKETVACI---MGST--NIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 318 vTtr~~~v~~~---~~~~--~~~~l~~L~~~~~~~lf~~~ 352 (955)
+++-....... +++. .++..+.-+.+|...++.+.
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44443222222 3443 35667888999999988663
No 122
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00033 Score=82.07 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=109.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-------CcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS-------ELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-------~~~~~~ 249 (955)
.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++..--....+ .+-.+. ..+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 47899999999999988543 2344667899999999999999877321111000 000000 000000
Q ss_pred HHHHHHHHHHcC-CCCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE-EecCChhHH
Q 002187 250 RIARAIIEALTG-SASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL-ITTRKETVA 326 (955)
Q Consensus 250 ~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~ 326 (955)
. +.. ......+..++.+.+... ..+++-++|+|++.......+..+...+-.......+| +|++...+.
T Consensus 91 e--------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 E--------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred E--------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0 000 000001112222222211 12566699999997655566777777776554455544 555555554
Q ss_pred Hh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHHH
Q 002187 327 CI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIAC 388 (955)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~~ 388 (955)
.. ......+++.+++.++....+...+...+.. --.+.++.|++.++|-+- |+..+-.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33 3335689999999999988887755332211 113457789999988664 4444443
No 123
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.2e-05 Score=57.90 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=17.4
Q ss_pred cccEEEcCCCCcccccccccCCCCcceEEeecCCCcccc
Q 002187 591 CLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERL 629 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~L 629 (955)
+|++|++++|.+..+|..+++|++|++|++++|. ++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 3445555555554444444455555555555444 4433
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=97.91 E-value=0.00071 Score=71.86 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=75.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++.. + +...+.+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 35788999999999999999874211111122225555521 1 222221111 11122222222 22
Q ss_pred EEEEEeCCCCc---------cccChhhHHhhccCCCCCcEEEEecCChhHHHhh--------cCcceEeCCCCChhhHHH
Q 002187 285 FLLVLDDVWNE---------DYCKWEPFYHCLKDGLHESKILITTRKETVACIM--------GSTNIISINVLSEMGCWL 347 (955)
Q Consensus 285 ~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 347 (955)
-+|+||++..- ..+....+...+.......+||+++....+.... .....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999541 1112233444455555566787887654443221 113578999999999999
Q ss_pred HhHhhhcC
Q 002187 348 VFEPLAFS 355 (955)
Q Consensus 348 lf~~~~~~ 355 (955)
++...+..
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887643
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00028 Score=82.82 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=110.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhh---------------------hccCC
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDV---------------------KKKFE 235 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 235 (955)
.+++|.+...+.+..++... .-...+.++|..|+||||+|+.+.....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 47899999999999998532 13445789999999999999888773210 11222
Q ss_pred ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcE
Q 002187 236 KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESK 315 (955)
Q Consensus 236 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 315 (955)
+..+..+....+.+ .++++.++.... ..+++-++|+|++..-+...+..+...+..-...+.
T Consensus 92 -~~~ld~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 12222221111111 111112111100 123455889999977665667788888877656676
Q ss_pred EEEec-CChhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHH
Q 002187 316 ILITT-RKETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAK 384 (955)
Q Consensus 316 iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 384 (955)
+|++| ....+...+ ....++++.+++.++....+.+.+...+-. --.+.+..|++.++|-.--+.
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 65544 444444433 336789999999999998888765433221 113457789999999665443
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00034 Score=79.29 Aligned_cols=168 Identities=17% Similarity=0.157 Sum_probs=100.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
...+.|+|..|+|||.|++++++.......-..+++++ ..++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34689999999999999999998432111112234443 3456677766664311 11223333333 3
Q ss_pred eEEEEEeCCCCccc-cCh-hhHHhhccC-CCCCcEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHhHh
Q 002187 284 KFLLVLDDVWNEDY-CKW-EPFYHCLKD-GLHESKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 284 ~~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34889999954321 122 234333322 12344688887642 2222334456788999999999999999
Q ss_pred hhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 352 LAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
++-..+- ...--+++..-|++.++|.|-.+..+.
T Consensus 287 ~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8743221 011225678889999999987776554
No 127
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.4e-05 Score=57.61 Aligned_cols=40 Identities=35% Similarity=0.515 Sum_probs=32.3
Q ss_pred CCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccC
Q 002187 613 LHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELP 654 (955)
Q Consensus 613 ~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp 654 (955)
++|++|++++|. ++.+|..+++|++|++|++++|. +.++|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 478999999998 88998888999999999999987 77654
No 128
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.88 E-value=0.00049 Score=70.11 Aligned_cols=181 Identities=14% Similarity=0.176 Sum_probs=98.8
Q ss_pred ccccch-hHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCcccHHHHHHH
Q 002187 178 EIVGRE-KEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE--KRMWICVSELFDEFRIARA 254 (955)
Q Consensus 178 ~~vGr~-~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~ 254 (955)
-++|-. +..-...+.+..... .....+.|+|..|+|||.|.+++++. ..+... .+++++ ..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHH
Confidence 345643 333444455544322 24456889999999999999999994 433322 345653 4456666
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc-cChhh-HHhhccC-CCCCcEEEEecCCh--------
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY-CKWEP-FYHCLKD-GLHESKILITTRKE-------- 323 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~-------- 323 (955)
+...+... .. ..+.+.+++ -=+|++||+..-.. ..|.. +...+.. ...|-+||+|++..
T Consensus 79 ~~~~~~~~-----~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRDG-----EI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHTT-----SH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHcc-----cc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 66666541 11 223344443 33789999965321 12332 2222221 12466899998653
Q ss_pred -hHHHhhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 324 -TVACIMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 324 -~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
.+...+...-++++++.++++...++.+++...+-. --+++++-|++.+.+..-.+
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHH
Confidence 222334556689999999999999999887543221 22355666666665544443
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.88 E-value=0.00017 Score=78.82 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=86.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.-.+++|.+...+.+..++... .-..++.++|.+|+||||+|+.+++. ... ....++.+. ... ...++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~ 86 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRN 86 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHH
Confidence 3457899999999999988532 23467778999999999999999883 221 133444444 221 11122
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccCCCCCcEEEEecCChh-HHHhh-cC
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKDGLHESKILITTRKET-VACIM-GS 331 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~ 331 (955)
.+..+.... .+.+.+-+||+||+... .......+...+.....++++|+||.... +...+ ..
T Consensus 87 ~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111111000 01134558899999654 22223334444555456778888886532 21211 22
Q ss_pred cceEeCCCCChhhHHHHhHh
Q 002187 332 TNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 332 ~~~~~l~~L~~~~~~~lf~~ 351 (955)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677777777777666543
No 130
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.2e-07 Score=89.74 Aligned_cols=166 Identities=22% Similarity=0.285 Sum_probs=115.2
Q ss_pred hhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEE
Q 002187 734 AELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLH 813 (955)
Q Consensus 734 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~ 813 (955)
..++.|.+|+.|+|.++.+.+ .+...+....+|+.|+|+.+.+.+.-...-.+.+|+.|..|+
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD-----------------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDD-----------------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred HHHHHHHhhhhccccccccCc-----------------HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 446677888888888775432 345567778999999999998865211122345899999999
Q ss_pred EeCCCCCCcC-CC-C-CCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccccccccccccccccc
Q 002187 814 LRWCSNCEHL-PP-L-GKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKG 890 (955)
Q Consensus 814 L~~~~~~~~l-~~-l-~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~ 890 (955)
|++|...++. .. . .--++|..|+|+||...-... ..... ...+|+|..|+|+++..|+.-.+.
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h~~tL--------~~rcp~l~~LDLSD~v~l~~~~~~----- 332 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-HLSTL--------VRRCPNLVHLDLSDSVMLKNDCFQ----- 332 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-HHHHH--------HHhCCceeeeccccccccCchHHH-----
Confidence 9999544432 11 1 124789999999886432211 11000 126899999999999888874332
Q ss_pred ccccCcccceeeeccCcCCCCCCC---CCCCCCCcCeEEEecCCC
Q 002187 891 EIRIMPRLSSLSIVYCPKLKALPD---HLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 891 ~~~~~~~L~~L~i~~c~~l~~lp~---~~~~l~~L~~L~l~~c~~ 932 (955)
.+..|+.|++|.++.|..+ +|. .+.+.|+|.+|++.||-.
T Consensus 333 ~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 4668999999999999743 343 356789999999999854
No 131
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00047 Score=80.96 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=111.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+...+.+..++.... -...+.++|..|+||||+|+.+++...-. ..+... ...+......+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 478999999999998886432 23467899999999999999998843211 111000 01111122222222
Q ss_pred HHHcC-----CCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecC-ChhHH
Q 002187 257 EALTG-----SASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTR-KETVA 326 (955)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 326 (955)
..... ........+.+.+.+... ..+++-++|+|++.......+..+...+........+|++|. ...+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 21110 000111222332222211 124556899999976555567778777776545565555444 34443
Q ss_pred Hhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 327 CIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
..+ .....+++..++.++....+.+.+...+... -.+....|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 332 3356788999999988887776654322111 1245778999999987655443
No 132
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.83 E-value=0.00051 Score=73.03 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=74.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF 285 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 285 (955)
-+.++|.+|+||||+|+.+++.....+.....-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999988776321111222223555542 11 222222211 11222223222 235
Q ss_pred EEEEeCCCCc---------cccChhhHHhhccCCCCCcEEEEecCChhHHHhhc--------CcceEeCCCCChhhHHHH
Q 002187 286 LLVLDDVWNE---------DYCKWEPFYHCLKDGLHESKILITTRKETVACIMG--------STNIISINVLSEMGCWLV 348 (955)
Q Consensus 286 LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 348 (955)
+|+||++..- ..+.+..+...+.....+.+||+++.......... ....+++++++.+|-..+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 11223445555655555667777776543322211 135789999999999999
Q ss_pred hHhhhc
Q 002187 349 FEPLAF 354 (955)
Q Consensus 349 f~~~~~ 354 (955)
+.+.+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888763
No 133
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2.7e-06 Score=96.38 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=89.2
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+..+..+.+..+. +.. ....+..++.|..|++.+|.+..+...+..+.+|++|+|++|. |+.+.. +..+..|+
T Consensus 70 ~l~~l~~l~l~~n~---i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL---IAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhh---hhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchh
Confidence 34555555554443 222 1122678889999999999988886668889999999999998 888775 77888899
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEec
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVG 696 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~ 696 (955)
.|++.+|. +..++ ++..+++|+.+++++|. +..++.. ...+.+|+.+.+..+.
T Consensus 144 ~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 144 ELNLSGNL-ISDIS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hheeccCc-chhcc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 99999988 77764 46668889999998883 3333332 3556666666555443
No 134
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.5e-07 Score=88.44 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=74.9
Q ss_pred hhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCC--CCCCChhcccccccE
Q 002187 734 AELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRN--VVPKNWVMSLTNLRV 811 (955)
Q Consensus 734 ~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~p~~~~~l~~L~~ 811 (955)
..+.+++.|.+|+|+||.+.... .......+ -++|..|+|+||.-.-. .+ ......+++|..
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~-------------Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEK-------------VTVAVAHI--SETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVH 317 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchh-------------hhHHHhhh--chhhhhhhhhhhHhhhhhhHH-HHHHHhCCceee
Confidence 45677888999999999543211 01111111 25888899988764320 01 112236899999
Q ss_pred EEEeCCCCCCc--CCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccc
Q 002187 812 LHLRWCSNCEH--LPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMK 877 (955)
Q Consensus 812 L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 877 (955)
|+|++|-.++. +-.+-+++.|++|.++.|..+ +++.+.. .+..|+|.+|++.+|-
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~---------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE---------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee---------eccCcceEEEEecccc
Confidence 99999866654 223678899999999988754 2333322 3478999999999875
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00057 Score=77.92 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=111.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc--c----------------CC-ce
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK--K----------------FE-KR 237 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------F~-~~ 237 (955)
.+++|-+...+.+...+... .-..+..++|..|+||||+|+.+.+..--.. . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 47999999999999888532 2334668999999999999998776321000 0 00 11
Q ss_pred EEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCC
Q 002187 238 MWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHE 313 (955)
Q Consensus 238 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 313 (955)
+++..+... ..+++.+.+... ..+++-++|+|++...+.+....++..+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 122111111 122332222211 1145568999999776666677777777665566
Q ss_pred cEEEEecCCh-hHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 314 SKILITTRKE-TVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 314 s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
+++|++|.+. .+...+ .....+++.+++.++....+.+.+...+.. --.+....|++.++|.+--+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 7777666542 322222 235689999999999988887765433221 123567889999999986555443
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00056 Score=77.54 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=107.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc---------------------cCC
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK---------------------KFE 235 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~ 235 (955)
.+++|.+..++.+.+++.... -...+.++|..|+||||+|+.+.+...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 479999999999999885321 235677899999999999998877321110 111
Q ss_pred ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHH-HhcCceEEEEEeCCCCccccChhhHHhhccCCCCCc
Q 002187 236 KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQE-CVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHES 314 (955)
Q Consensus 236 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 314 (955)
.+++......... +..++.+.+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 1111111111111 11111111111 112566689999986544445566777776655566
Q ss_pred EEEEecC-ChhHHHh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh-HHHHHHHH
Q 002187 315 KILITTR-KETVACI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP-LAAKTIAC 388 (955)
Q Consensus 315 ~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~ 388 (955)
.+|++|. ...+... ......++++++++++....+.+.+-..+.. --.+.++.|++.++|.+ .|+..+-.
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6666653 3333322 2335689999999999988887765332211 12345778999999966 44444433
No 137
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=4.9e-06 Score=94.34 Aligned_cols=103 Identities=23% Similarity=0.332 Sum_probs=65.4
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+.+|..|++.++.. .. +...+..+++|++|++++|.|..+ ..+..+..|+.|++++|. |..++. +..+++|+
T Consensus 93 ~~~~l~~l~l~~n~i---~~-i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI---EK-IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISG-LESLKSLK 165 (414)
T ss_pred cccceeeeeccccch---hh-cccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccC-Cccchhhh
Confidence 566677777766652 22 111145677777777777777666 346666667777777777 666654 45577777
Q ss_pred EEeeCCCCCccccCcc-ccCCCCCcEeeCCCC
Q 002187 641 RLNVDSCSNLRELPQG-IGKLRKLMHLENDQT 671 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 671 (955)
.+++++|. +..++.. ...+.+|+.+.+.+|
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 77777776 5555433 466677777777666
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.78 E-value=0.00042 Score=73.12 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=81.7
Q ss_pred ccccchhHHHHHHHH---Hhc------CCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 178 EIVGREKEKKELVNR---LLC------ESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~---L~~------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
.++|.+..++.|.+. ..- ..-...+...-+.++|.+|+||||+|+.+++...-.+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 578888766665433 211 11111234566889999999999999999874211111112223333221
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc--------ccChhhHHhhccCCCCCcEEEEec
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED--------YCKWEPFYHCLKDGLHESKILITT 320 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 320 (955)
++ ....-+. ....+...+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 84 -~l----~~~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DL----VGEYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hh----hhhhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11 1111000 011122222221 23488999996421 112233444444443344566665
Q ss_pred CChhHHH------hh-cC-cceEeCCCCChhhHHHHhHhhhc
Q 002187 321 RKETVAC------IM-GS-TNIISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 321 r~~~v~~------~~-~~-~~~~~l~~L~~~~~~~lf~~~~~ 354 (955)
....... .+ .. ...+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5433211 11 11 24688999999999999987764
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00046 Score=80.80 Aligned_cols=197 Identities=14% Similarity=0.187 Sum_probs=108.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+..++.+.+.+... .-...+.++|..|+||||+|+.+++...-....+. ..++.....+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 47999999999999888532 12345678999999999999988874211111000 0001111111110
Q ss_pred HHH-------cCC-CCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE-ecCChhHH
Q 002187 257 EAL-------TGS-ASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI-TTRKETVA 326 (955)
Q Consensus 257 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 326 (955)
..- ... .....+..++...+... ..+++-++|+|++..-+......+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 000 000 00001112222222111 124455899999976555566777777766555666654 44445555
Q ss_pred Hhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh-HHHHHHHHH
Q 002187 327 CIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP-LAAKTIACL 389 (955)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~~~~~ 389 (955)
..+ .....+++.+++.++....+...+...+... -.+....|++.++|.. .|+..+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 433 3356889999999998887776553222111 1345677889998865 455555443
No 140
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0009 Score=77.65 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=111.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|-+..++.+..++... .-...+.++|..|+||||+|+.+++...-..... ...+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHH
Confidence 47899999999999998542 2344678999999999999999988432111100 0001111111 1111
Q ss_pred HHHc-----CCCCCCCChHHHHHHH---HH-HhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecC-ChhHH
Q 002187 257 EALT-----GSASNFGEFQSLMQHI---QE-CVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTR-KETVA 326 (955)
Q Consensus 257 ~~l~-----~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~ 326 (955)
..-. .........+++.+.. .. -..+++-++|+|++..-+...+..+...+......+.+|++|. ...+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 0000 0000011222322221 11 1235566899999976555567778777776555666666554 34443
Q ss_pred Hhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 327 CIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
..+ .....+++.+++.++-...+.+.+...+.. --.+....|++.++|.+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 332 235678999999999988887766433211 1235577788999997754443
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.71 E-value=0.00025 Score=79.09 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=89.3
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 176 ESEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
..++.|+++.++++.+.+..+-. -+-...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 45789999999999887642211 01234556899999999999999999983 3322 333321
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc-----------ccChhhHHhhcc--C---CC
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED-----------YCKWEPFYHCLK--D---GL 311 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~--~---~~ 311 (955)
.. +.....+ +.......+.+.. ...+.+|+|||++.-. ......+...+. + ..
T Consensus 199 ~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11 1111111 1111222222222 3456899999996420 011112333221 1 12
Q ss_pred CCcEEEEecCChhHH-Hhh-c---CcceEeCCCCChhhHHHHhHhhhc
Q 002187 312 HESKILITTRKETVA-CIM-G---STNIISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 312 ~gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 354 (955)
.+..||.||...... ..+ . -...+.+++.+.++..++|+.+..
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 356678787654322 221 1 245789999999999999988764
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.69 E-value=0.0011 Score=74.89 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=90.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
...+.|+|..|+|||.|++++++. +.... ..++++++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 446889999999999999999994 33333 23456643 33444555555322 1222 233333
Q ss_pred CceEEEEEeCCCCcccc-Ch-hhHHhhccC-CCCCcEEEEecCCh-h-H-------HHhhcCcceEeCCCCChhhHHHHh
Q 002187 282 RKKFLLVLDDVWNEDYC-KW-EPFYHCLKD-GLHESKILITTRKE-T-V-------ACIMGSTNIISINVLSEMGCWLVF 349 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~-~-v-------~~~~~~~~~~~l~~L~~~~~~~lf 349 (955)
+ .-+|||||+...... .+ +.+...+.. ...+..||+|+... . + ...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 238899999643211 11 223333321 12345677777642 1 1 112223357899999999999999
Q ss_pred HhhhcCCCCCCCcchHHHHHHHHHhhcCCChHH
Q 002187 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLA 382 (955)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla 382 (955)
.+.+...+-.. -+++...|++.+.|..-.
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHH
Confidence 98875432211 145677788888776553
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.68 E-value=0.00046 Score=84.33 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=85.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc------CCceEE-EEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK------FEKRMW-ICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~ 249 (955)
..++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+++. +... .+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 468999999999999996542 223569999999999999999984 3211 123333 22221
Q ss_pred HHHHHHHHHHcCCCCCCCCh-HHHHHHHHHHh-cCceEEEEEeCCCCcc-------ccChhh-HHhhccCCCCCcEEEEe
Q 002187 250 RIARAIIEALTGSASNFGEF-QSLMQHIQECV-QRKKFLLVLDDVWNED-------YCKWEP-FYHCLKDGLHESKILIT 319 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~~~~-l~~~l~~~~~gs~iivT 319 (955)
+........+. +.+...+.+.- .+++.+|++|++..-. ..+... +...+..| .-++|-|
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 00000011111 12222222222 2568999999985421 111111 33333322 2456666
Q ss_pred cCChhHHHh-------hcCcceEeCCCCChhhHHHHhHhh
Q 002187 320 TRKETVACI-------MGSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 320 tr~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
|...+.... ..-...+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 654332211 122468999999999999997543
No 144
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.8e-05 Score=90.76 Aligned_cols=129 Identities=23% Similarity=0.263 Sum_probs=94.1
Q ss_pred CceEEEEEEccCCC--CcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcc
Q 002187 539 KKVFHLMLTLHRGA--SVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLK 616 (955)
Q Consensus 539 ~~~r~l~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr 616 (955)
.+++|+.+.+...- .-+..+..-+|.|++|.+.+-..... .+.....++++|+.||++++++..+ ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND--DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch--hHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 46677776654321 12445555789999999998654221 1345578999999999999999988 7899999999
Q ss_pred eEEeecCCCccccc--hhhcCCCCCCEEeeCCCCCccccCcc-------ccCCCCCcEeeCCCCC
Q 002187 617 YLNLSCQMEIERLP--ETLCELYNLERLNVDSCSNLRELPQG-------IGKLRKLMHLENDQTD 672 (955)
Q Consensus 617 ~L~L~~~~~i~~LP--~~i~~L~~Lq~LdL~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 672 (955)
.|.+++-. +..-+ ..+.+|++|+.||+|...... -+.. -..||+||.|+.+++.
T Consensus 199 ~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcc
Confidence 99999766 55433 357889999999999876332 2211 1348999999998773
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=2.4e-06 Score=95.49 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=70.6
Q ss_pred HhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCccccCCCCC
Q 002187 585 LFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQGIGKLRKL 663 (955)
Q Consensus 585 ~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L 663 (955)
.+.-++.|+.|+|++|++.+.- .+..|++|+.|||+.|. +..+|.. ...+. |+.|++++|. ++.+ .+|.+|++|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhh
Confidence 3555677888888888877653 67778888888888887 7777742 23333 8888888877 7776 467888888
Q ss_pred cEeeCCCCCCCcccc--cCCCCCCCCCccceeEec
Q 002187 664 MHLENDQTDSLRYLP--VGIGELISLRRVSKLVVG 696 (955)
Q Consensus 664 ~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~ 696 (955)
++|++++|- +.... .-++.|..|..|.+-.+.
T Consensus 257 ~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888772 22111 113455556666555444
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0011 Score=74.83 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=85.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
...+.|+|..|+|||+|++++++.. ....-.+++++. ..+...+...+... . ...+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 4568899999999999999999943 322233455542 33444555554321 1 122333333 3
Q ss_pred eEEEEEeCCCCccccCh--hhHHhhccC-CCCCcEEEEecCCh-h--------HHHhhcCcceEeCCCCChhhHHHHhHh
Q 002187 284 KFLLVLDDVWNEDYCKW--EPFYHCLKD-GLHESKILITTRKE-T--------VACIMGSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 284 ~~LlVlDdvw~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
.-+|++||+.......| +.+...+.. ...|..||+||... . +...+...-.+.+.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888999854321111 223333211 11345688887542 1 122233346889999999999999988
Q ss_pred hhcCCCCCCCcchHHHHHHHHHhhcCC
Q 002187 352 LAFSGKSTVERENLEEIGREITRKCKG 378 (955)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~c~g 378 (955)
++-..+- ..+ .++..-|++.+.|
T Consensus 283 k~~~~~~-~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSI-RIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCC
Confidence 7744321 111 3444555555543
No 147
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=0.00019 Score=66.91 Aligned_cols=96 Identities=22% Similarity=0.146 Sum_probs=52.8
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC-ceE
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR-KKF 285 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~ 285 (955)
|.|+|.+|+||||+|+.++++. ..+ .+.++.+...+. ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---cccccccccccc---------------cccccccccccccccccccccce
Confidence 5789999999999999999943 222 344444332100 1111222333333333233 379
Q ss_pred EEEEeCCCCccccC-----------hhhHHhhccCCC---CCcEEEEecCC
Q 002187 286 LLVLDDVWNEDYCK-----------WEPFYHCLKDGL---HESKILITTRK 322 (955)
Q Consensus 286 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtr~ 322 (955)
+|++||++.-.... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996533222 333444444332 23567777765
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0019 Score=69.40 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=113.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhh-------------hccCCceEEEEeC
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDV-------------KKKFEKRMWICVS 243 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs 243 (955)
.+++|.+...+.+...+.... -.....++|..|+||+++|..+.+..-- ...+....|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368999999999999885432 2468889999999999999777663211 1112233455321
Q ss_pred CcccHHHHHHHHHHHHc--CCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEE
Q 002187 244 ELFDEFRIARAIIEALT--GSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKI 316 (955)
Q Consensus 244 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 316 (955)
...+-..+-.+-++..+ ......-..+++ +.+.+.+ .+++-++|+|++..........+...+-.-.+ +.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC-CeE
Confidence 10000000011111111 011111222332 2334433 24566999999977666667778777765443 445
Q ss_pred EEec-CChhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 317 LITT-RKETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 317 ivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
|++| ....+...+ .-...+.+.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 5444 444444443 3367899999999999999987642111 0111357889999999766543
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.00088 Score=75.90 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=91.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccC-C-ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKF-E-KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
..-+.|+|..|+|||.|++++++. +.... . .++|+++ .++..++...+... ..+ .+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 345999999999999999999994 33333 3 3556654 34566666655321 122 2333333
Q ss_pred CceEEEEEeCCCCcc-ccCh-hhHHhhccC-CCCCcEEEEecC-ChhHH--------HhhcCcceEeCCCCChhhHHHHh
Q 002187 282 RKKFLLVLDDVWNED-YCKW-EPFYHCLKD-GLHESKILITTR-KETVA--------CIMGSTNIISINVLSEMGCWLVF 349 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf 349 (955)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. ...-. ..+...-.+.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999996421 1112 223333221 112446888875 32211 12233457899999999999999
Q ss_pred HhhhcCCCCCCCcchHHHHHHHHHhhcCCChH
Q 002187 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPL 381 (955)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 381 (955)
++.+...+- .. -.++...|++.+.|.--
T Consensus 273 ~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 273 RKMLEIEHG-EL---PEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHhcCC-CC---CHHHHHHHHhccccCHH
Confidence 888743221 11 14567778888777543
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.002 Score=75.24 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=107.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.+...+.+.+++.... -...+.++|..|+||||+|+.+.+...-...-+ ...++.....+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 579999999999999986432 244667899999999999998876321111000 00111111111111
Q ss_pred HHHcC-----CCCCCCChHHHH---HHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEE-ecCChhHH
Q 002187 257 EALTG-----SASNFGEFQSLM---QHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILI-TTRKETVA 326 (955)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~ 326 (955)
..... ........+++. ..+... ..++.-++|+|++..-....+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 10000 000001122222 111110 135566889999976555567777777665444555554 44444443
Q ss_pred Hhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHH
Q 002187 327 CIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAK 384 (955)
Q Consensus 327 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 384 (955)
..+ .....+++.+++.++....+...+-..+-.. -.+....|++.++|-+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 332 3356789999999999888877664322111 13456778888888775443
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0012 Score=71.31 Aligned_cols=97 Identities=9% Similarity=0.068 Sum_probs=67.0
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh-hHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCC
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE-TVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKST 359 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 359 (955)
+++-++|+|+++..+......+...+..-..++.+|+||.+. .+...+ +-...+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 344456789998877777788888887665677777777664 444333 33678999999999999888765311 1
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 360 VERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567789999999766544
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.56 E-value=0.00053 Score=84.24 Aligned_cols=154 Identities=20% Similarity=0.203 Sum_probs=84.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh---ccC-CceEEEEeCCcccHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK---KKF-EKRMWICVSELFDEFRIA 252 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~~~ 252 (955)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++....-. ... +..+|.- +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH-
Confidence 358999999999999996442 2234699999999999999998842111 011 2345531 11111
Q ss_pred HHHHHHHcCCCCCCCChHH-HHHHHHHHhcCceEEEEEeCCCCc-------cccChhhH-HhhccCCCCCcEEEEecCCh
Q 002187 253 RAIIEALTGSASNFGEFQS-LMQHIQECVQRKKFLLVLDDVWNE-------DYCKWEPF-YHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~-------~~~~~~~l-~~~l~~~~~gs~iivTtr~~ 323 (955)
+.+. ....+.++ +...+.+.-..++.+|++|++..- ...+...+ ...+..+ .-++|.+|...
T Consensus 247 ------~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 247 ------LAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred ------hccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 1111 11122222 222333332356889999999421 00112222 2223222 23455555544
Q ss_pred hHHHh-------hcCcceEeCCCCChhhHHHHhHh
Q 002187 324 TVACI-------MGSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 324 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
+.... ......+.++..+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12245788899999998888764
No 153
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=5.2e-05 Score=76.30 Aligned_cols=205 Identities=19% Similarity=0.154 Sum_probs=105.6
Q ss_pred cCCCcccEEEcCCCCccc---ccccccCCCCcceEEeecCCC---ccccchhhcCCCCCCEEeeCCCCC-ccccCccccC
Q 002187 587 DKLTCLRTLKLDGSVIIE---IPTNIEKLLHLKYLNLSCQME---IERLPETLCELYNLERLNVDSCSN-LRELPQGIGK 659 (955)
Q Consensus 587 ~~l~~Lr~L~L~~~~~~~---lp~~i~~L~~Lr~L~L~~~~~---i~~LP~~i~~L~~Lq~LdL~~~~~-l~~lp~~i~~ 659 (955)
..+..++.|||.+|.+.. +-.-+.+|++|++|+|+.|.. |..+| -.+.||++|-|.|+.. +...-..+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 456677888888877643 323345778888888887751 23344 2456788888887651 1223344566
Q ss_pred CCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCC
Q 002187 660 LRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKK 739 (955)
Q Consensus 660 L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~ 739 (955)
+++++.|+++.|+ ++.+.+-...... .-.++..+..+..+.. .......-..-.
T Consensus 145 lP~vtelHmS~N~--------------~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~--------~w~~~~~l~r~F 198 (418)
T KOG2982|consen 145 LPKVTELHMSDNS--------------LRQLNLDDNCIED----WSTEVLTLHQLPCLEQ--------LWLNKNKLSRIF 198 (418)
T ss_pred chhhhhhhhccch--------------hhhhccccccccc----cchhhhhhhcCCcHHH--------HHHHHHhHHhhc
Confidence 7778888877662 1111111111000 0001111111111000 000000111224
Q ss_pred CCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCC
Q 002187 740 KNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSN 819 (955)
Q Consensus 740 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 819 (955)
+++.++.+..|.+.. ........++|.+..|.+..+.+-.-.. ...+..++.|..|.+++++.
T Consensus 199 pnv~sv~v~e~PlK~----------------~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKT----------------ESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred ccchheeeecCcccc----------------hhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcc
Confidence 566666666553221 1123356667777777777665432000 11233688888888888876
Q ss_pred CCcCCC-------CCCCCCcceeee
Q 002187 820 CEHLPP-------LGKLPSLEDLEI 837 (955)
Q Consensus 820 ~~~l~~-------l~~l~~L~~L~L 837 (955)
++.+.. ++.|++++.|+=
T Consensus 262 ~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 262 SDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cccccCCcceEEEEeeccceEEecC
Confidence 655433 566777777754
No 154
>PRK06620 hypothetical protein; Validated
Probab=97.54 E-value=0.0012 Score=67.02 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=77.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..+.|+|.+|+|||+|++.+++... . .++. ..+.. + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5789999999999999999887432 1 1211 00000 0 011 123
Q ss_pred EEEEEeCCCCccccChhhHHhhccC-CCCCcEEEEecCChh-------HHHhhcCcceEeCCCCChhhHHHHhHhhhcCC
Q 002187 285 FLLVLDDVWNEDYCKWEPFYHCLKD-GLHESKILITTRKET-------VACIMGSTNIISINVLSEMGCWLVFEPLAFSG 356 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 356 (955)
-++++||+..-. + ..+...+.. ...|..||+|++... ....+...-+++++++++++-..++++.+...
T Consensus 87 d~lliDdi~~~~--~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQ--E-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccch--H-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 478899995211 0 122222211 134668999987532 22233445589999999999888887776421
Q ss_pred CCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 357 KSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
+ .. --+++.+-|++.+.|---.+
T Consensus 164 ~-l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 S-VT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred C-CC---CCHHHHHHHHHHccCCHHHH
Confidence 1 11 11456677777776654433
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.54 E-value=0.00079 Score=81.74 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh---ccC-CceEEEEeCCcccHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK---KKF-EKRMWICVSELFDEFRIA 252 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~~~ 252 (955)
+.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++..... ..+ +..+|.. +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH-
Confidence 368999999999999886432 2235699999999999999999843111 111 2334431 11111
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc---------ccChhhHHhhccCCCCCcEEEEecCC
Q 002187 253 RAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED---------YCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
+. + .....+.++....+.+.+ +.++.+|++|++..-. .+.-+.+...+..+ .-++|-+|..
T Consensus 250 ---~a---~-~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 250 ---LA---G-TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred ---hh---h-ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 10 0 001112222222233323 3467899999985311 11112233333322 2344444443
Q ss_pred hhHHH------hh-cCcceEeCCCCChhhHHHHhHhhh
Q 002187 323 ETVAC------IM-GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 323 ~~v~~------~~-~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
.+... .+ .-...+.+++++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22211 11 224578999999999999998644
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.54 E-value=0.0025 Score=64.12 Aligned_cols=125 Identities=22% Similarity=0.328 Sum_probs=72.3
Q ss_pred cCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHH
Q 002187 173 SIDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIA 252 (955)
Q Consensus 173 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 252 (955)
.+..+.++|.+.+++.|++-...-- .+....-+.++|..|.|||++++++.+...-++ .--|.|..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--------
Confidence 3455689999998888876443211 122344577899999999999999988322211 11222222
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCC-ccccChhhHHhhccCC---CCCc-EEEEecCChh
Q 002187 253 RAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWN-EDYCKWEPFYHCLKDG---LHES-KILITTRKET 324 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs-~iivTtr~~~ 324 (955)
.+..++..+.+.++. ...||+|.+||+.= +....+..++..|..+ .+.. .|..||..+.
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 122334444444442 35799999999852 2234566677666543 2333 3444554443
No 157
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.49 E-value=0.0022 Score=73.54 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=92.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE--KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
..-+.|+|..|+|||+|++++++. +...+. .++++++. ++...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 456899999999999999999994 444432 24455443 3344444444321 112 2333333
Q ss_pred CceEEEEEeCCCCccccC-h-hhHHhhccC-CCCCcEEEEecCChh--H-------HHhhcCcceEeCCCCChhhHHHHh
Q 002187 282 RKKFLLVLDDVWNEDYCK-W-EPFYHCLKD-GLHESKILITTRKET--V-------ACIMGSTNIISINVLSEMGCWLVF 349 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~--v-------~~~~~~~~~~~l~~L~~~~~~~lf 349 (955)
+.-+|||||+....... + +.+...+.. ...|..||+|+.... + ...+....++++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 23489999996421111 1 223332211 112445777776531 1 222333458999999999999999
Q ss_pred HhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
++.+...+. . --+++...|++.+.|..-.+
T Consensus 290 ~~~~~~~~~-~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGI-D---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCC-C---CCHHHHHHHHcCcCCCHHHH
Confidence 998753221 1 12356778888888876543
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.0021 Score=73.92 Aligned_cols=154 Identities=11% Similarity=0.128 Sum_probs=89.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
..+.|+|..|+|||.|++++++. ....+ -.+++++. .++..++...+... .. ..+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 35899999999999999999994 33322 23456643 33444444444321 11 123333332
Q ss_pred ceEEEEEeCCCCccc-cChh-hHHhhccC-CCCCcEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHhH
Q 002187 283 KKFLLVLDDVWNEDY-CKWE-PFYHCLKD-GLHESKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVFE 350 (955)
Q Consensus 283 k~~LlVlDdvw~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (955)
-=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-++.|+..+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 23788999964322 2232 23333321 12345688888752 222334456689999999999999999
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 351 PLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
+++...+-.. -.++.+-|++.+.+..
T Consensus 457 kka~~r~l~l----~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 457 KKAVQEQLNA----PPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHhcCCCC----CHHHHHHHHHhccCCH
Confidence 8875432211 1355666666665543
No 159
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.0024 Score=65.09 Aligned_cols=134 Identities=15% Similarity=0.170 Sum_probs=76.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE----eCCc-----
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC----VSEL----- 245 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----vs~~----- 245 (955)
+...+.+|......+..+|.. ..+|.+.|..|.|||+||.++..+.-..+.|+.++-+. +++.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLP 124 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLP 124 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCC
Confidence 334578899999999998853 23899999999999999998877432234454333221 1110
Q ss_pred ccH----HHHHHHHHHHHcCCCCCCCChHHHHHHH-----------HHHhcCceE---EEEEeCCCCccccChhhHHhhc
Q 002187 246 FDE----FRIARAIIEALTGSASNFGEFQSLMQHI-----------QECVQRKKF---LLVLDDVWNEDYCKWEPFYHCL 307 (955)
Q Consensus 246 ~~~----~~~~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~k~~---LlVlDdvw~~~~~~~~~l~~~l 307 (955)
-+. .-.++-+...+..-. +. +.+...+ -.+++|..+ +||+|++.+.+. ..+...+
T Consensus 125 G~~~eK~~p~~~pi~D~L~~~~-~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~l 197 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVRRL-GA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFL 197 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-Ch---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHH
Confidence 011 111222222222100 00 1111111 125667655 999999977654 3444444
Q ss_pred cCCCCCcEEEEecCCh
Q 002187 308 KDGLHESKILITTRKE 323 (955)
Q Consensus 308 ~~~~~gs~iivTtr~~ 323 (955)
..-+.+|++|+|--..
T Consensus 198 tR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 198 TRLGENVTVIVNGDIT 213 (262)
T ss_pred hhcCCCCEEEEeCChh
Confidence 5556789999987543
No 160
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=7.3e-05 Score=75.29 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=112.2
Q ss_pred CCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChh-cccccccEEEEeC
Q 002187 738 KKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWV-MSLTNLRVLHLRW 816 (955)
Q Consensus 738 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~ 816 (955)
.++.++.|+|.||.+++. .++...+..+|.|+.|+|+.|.....+ ..+ ..+.+|+.|.|.+
T Consensus 69 ~~~~v~elDL~~N~iSdW---------------seI~~ile~lP~l~~LNls~N~L~s~I---~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDW---------------SEIGAILEQLPALTTLNLSCNSLSSDI---KSLPLPLKNLRVLVLNG 130 (418)
T ss_pred HhhhhhhhhcccchhccH---------------HHHHHHHhcCccceEeeccCCcCCCcc---ccCcccccceEEEEEcC
Confidence 467889999999976542 345667778899999999998865411 111 2457899999987
Q ss_pred CCC-CCcCCC-CCCCCCcceeeecCCCCceEeCccccCCccCC-C-----------------CccccCCCccceeeeccc
Q 002187 817 CSN-CEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVERDT-D-----------------GSSVIAFPKLKELRFWSM 876 (955)
Q Consensus 817 ~~~-~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~-~-----------------~~~~~~fp~L~~L~l~~~ 876 (955)
... ++.... +..+|.++.|+++.++ ++.+...-.+..+.+ . +.-...||++..+.+..|
T Consensus 131 T~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 131 TGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred CCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 731 222222 6678888888887653 332221111111100 0 000124666666666665
Q ss_pred ccccccccccccccccccCcccceeeeccCcCCCCCC--CCCCCCCCcCeEEEecCCCcccccccCCCccccCCCCCccc
Q 002187 877 KELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALP--DHLLQKTTLQRLSIFSCPILKKTKERGEDWPKIRHIPNILI 954 (955)
Q Consensus 877 ~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~i~hi~~i~~ 954 (955)
| +++..... ....+|.+..|.+..+. +.++. ..+..++.|..|.++++|.+.....+...+--|+.+|++++
T Consensus 210 P-lK~~s~ek----~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 210 P-LKTESSEK----GSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred c-ccchhhcc----cCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 4 22222211 23345555555555543 33332 23556788888888888887776443334666788888776
Q ss_pred C
Q 002187 955 L 955 (955)
Q Consensus 955 ~ 955 (955)
|
T Consensus 284 L 284 (418)
T KOG2982|consen 284 L 284 (418)
T ss_pred e
Confidence 5
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.036 Score=60.82 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=85.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
....+.|+|..|.|||-|++++.+ ....+......++++ .+....+++..+... -....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 466899999999999999999999 455555433333333 234445555554331 123344444
Q ss_pred ceEEEEEeCCCCcc-ccChh-hHHhhccC-CCCCcEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHhH
Q 002187 283 KKFLLVLDDVWNED-YCKWE-PFYHCLKD-GLHESKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVFE 350 (955)
Q Consensus 283 k~~LlVlDdvw~~~-~~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 350 (955)
.-=++++||++--. .+.|+ .+...+.. ...|-.||+|++.. .+...+...-++++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 22388999996421 11222 23333321 11233899998652 233445566789999999999999999
Q ss_pred hhhcCCC
Q 002187 351 PLAFSGK 357 (955)
Q Consensus 351 ~~~~~~~ 357 (955)
+++...+
T Consensus 255 kka~~~~ 261 (408)
T COG0593 255 KKAEDRG 261 (408)
T ss_pred HHHHhcC
Confidence 8765443
No 162
>PRK08116 hypothetical protein; Validated
Probab=97.43 E-value=0.00055 Score=71.97 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=60.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..+.++|..|+|||.||.++++.. ..+-..+++++ ..+++..+........ ..+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 358899999999999999999953 33333456665 3345555554443211 111112 233344333
Q ss_pred EEEEEeCCCCccccChhh--HHhhccC-CCCCcEEEEecCCh
Q 002187 285 FLLVLDDVWNEDYCKWEP--FYHCLKD-GLHESKILITTRKE 323 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 323 (955)
||||||+..+...+|.. +...+.. -.++..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996444445543 3333322 12456699999753
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00087 Score=63.24 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=47.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc-
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK- 283 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 283 (955)
..+.|+|.+|+||||+|+.++... ......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 378999999999999999999843 222223556655544332222211 111111111122222333444444443
Q ss_pred eEEEEEeCCCCc
Q 002187 284 KFLLVLDDVWNE 295 (955)
Q Consensus 284 ~~LlVlDdvw~~ 295 (955)
..+|++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 389999999764
No 164
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00028 Score=76.76 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=50.8
Q ss_pred hhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeC
Q 002187 774 LEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVG 847 (955)
Q Consensus 774 ~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~ 847 (955)
...+..+.+++.|++++|.+.. + |. -.++|+.|.+++|..++.+|..- .++|+.|.+++|..+..++
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~s--L-P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIES--L-PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcc--c-CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc
Confidence 3445556899999999997776 6 52 34579999999998888888521 3689999999997665443
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=0.00091 Score=77.96 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=41.6
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 174 IDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 174 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
....+++|.++.++++..++....- ......++.|+|+.|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999865432 1223458999999999999999999984
No 166
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0047 Score=70.54 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=94.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
+.+.+|-++..++|++.|.-..-...-+-.+++.||++|+|||+|++.+++ ...+.| +-++++.--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh----
Confidence 457899999999999999633211222346999999999999999999998 555555 22344443333221
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcccc----ChhhHHhhccCCC-------------CCcEE-E
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYC----KWEPFYHCLKDGL-------------HESKI-L 317 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~~~-------------~gs~i-i 317 (955)
+.-.....+... ..+++.+++ .+.++-+++||.++....+ .-..++..|.... .=|.| .
T Consensus 393 -RGHRRTYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 393 -RGHRRTYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred -ccccccccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 000011111111 223333332 3457789999999643211 1112333332111 12443 4
Q ss_pred EecCC-hh-H-HHhhcCcceEeCCCCChhhHHHHhHhhh
Q 002187 318 ITTRK-ET-V-ACIMGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 318 vTtr~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
|||-+ -+ + +..++-.+++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44443 11 2 2334556789999999999888777664
No 167
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.37 E-value=3.6e-05 Score=68.52 Aligned_cols=104 Identities=23% Similarity=0.245 Sum_probs=68.0
Q ss_pred ceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCC-CCcceEEeecCCCccccchhhcCCCCCCEEe
Q 002187 565 LRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKL-LHLKYLNLSCQMEIERLPETLCELYNLERLN 643 (955)
Q Consensus 565 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L-~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~Ld 643 (955)
+..+++++|....+.. ....+.+...|...+|++|.+..+|+.+... +.+..|+|++|. +..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~d-avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIAD-AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHH-HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 4445555554322222 2333566666777777777777777666544 367777777777 777777777777777777
Q ss_pred eCCCCCccccCccccCCCCCcEeeCCCC
Q 002187 644 VDSCSNLRELPQGIGKLRKLMHLENDQT 671 (955)
Q Consensus 644 L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 671 (955)
++.|. +...|.-|..|.+|-.|+..+|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 77776 6677777766777777776555
No 168
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.33 E-value=0.0053 Score=74.34 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=90.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
+.+++|.++.+++|+++|..........-.++.++|++|+||||+|+.++. .....| +-+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch
Confidence 346899999999999988732211122345799999999999999999997 333333 123333333332211110
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccC----hhhHHhhccCC---------------CCCcEE
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCK----WEPFYHCLKDG---------------LHESKI 316 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~i 316 (955)
.. ..+. ....+.+.+.+. ...+-+|+||.++.-.... ...+...+... -...-+
T Consensus 396 -~~----~~g~-~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RT----YIGS-MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hc----cCCC-CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00 0011 112233333322 2234578999996533221 23444444321 123344
Q ss_pred EEecCChhHHHh-hcCcceEeCCCCChhhHHHHhHhhh
Q 002187 317 LITTRKETVACI-MGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 317 ivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
|.|+.+..+... .+-..++.+.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 555554433322 2334678899999888888877655
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0022 Score=79.15 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=82.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc------CCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK------FEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 250 (955)
..++||+.++.+++..|.... ..-+.++|.+|+|||++|+.++.. +... ....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 359999999999999996432 223458999999999999998884 2221 12233321 1111
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHh-c-CceEEEEEeCCCCcc----c---cChhhHHhhccCCCCCcEEEEecC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECV-Q-RKKFLLVLDDVWNED----Y---CKWEPFYHCLKDGLHESKILITTR 321 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~----~---~~~~~l~~~l~~~~~gs~iivTtr 321 (955)
++ . +. ....+.+.....+.+.+ + +++.+|++|++..-. . .+...+..+....+ .-++|-+|.
T Consensus 240 l~----a---~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 LI----A---GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred Hh----h---cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 10 0 00 01112222222222222 2 468999999995321 0 01111222211112 234555554
Q ss_pred ChhHHHh-------hcCcceEeCCCCChhhHHHHhHhh
Q 002187 322 KETVACI-------MGSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 322 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
....... ..-...+.++..+.++...++...
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 4433221 122456889999999999988764
No 170
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.32 E-value=0.0081 Score=73.49 Aligned_cols=165 Identities=17% Similarity=0.204 Sum_probs=85.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|.++.++.|.+++..........-.++.++|++|+|||++|+.+++. ....| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 458999999999988775321111123347999999999999999999983 33333 12223332232221100
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccC----hhhHHhhccC--------C-------CCCcEEE
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCK----WEPFYHCLKD--------G-------LHESKIL 317 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 317 (955)
...........+.+.+... ..++-+|+||+++...... ...+...+.. . ..+.-+|
T Consensus 393 ----~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ----RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ----CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0000011112333333333 2334488999996532211 1223322221 1 0123345
Q ss_pred EecCChh-HHHh-hcCcceEeCCCCChhhHHHHhHhhh
Q 002187 318 ITTRKET-VACI-MGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 318 vTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
.||.... +... .....++++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554421 2211 2334578899999888888876654
No 171
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.014 Score=58.62 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=106.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC-CcccHHHHHHHHHHHHcCCCCCC--CChHHHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS-ELFDEFRIARAIIEALTGSASNF--GEFQSLMQHIQEC 279 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 279 (955)
+-.++.++|.-|.|||.++++...... =+.++=|.+. ...+...+...|+..+....... .-.++....+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 455899999999999999995444211 1122223333 34566778888888887632111 1233444444444
Q ss_pred h-cCce-EEEEEeCCCCccccChhhHHhhccCCCCCc---EEEEecCC--------hhHHHhhcCcce-EeCCCCChhhH
Q 002187 280 V-QRKK-FLLVLDDVWNEDYCKWEPFYHCLKDGLHES---KILITTRK--------ETVACIMGSTNI-ISINVLSEMGC 345 (955)
Q Consensus 280 l-~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTtr~--------~~v~~~~~~~~~-~~l~~L~~~~~ 345 (955)
. +++| ..+++|+......+..+.++-.......++ +|+..-.- ......-.-..+ |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 4 4677 899999986655455555544322111112 23333221 111111111234 99999999999
Q ss_pred HHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHH
Q 002187 346 WLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACL 389 (955)
Q Consensus 346 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 389 (955)
..++..+..+.....+- --.+....|..+..|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHH
Confidence 99988877655332211 12345678999999999999887743
No 172
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.31 E-value=0.00023 Score=77.40 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=59.0
Q ss_pred hcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcE
Q 002187 586 FDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMH 665 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~ 665 (955)
+..+++++.|++++|.+..+|. + -.+|+.|.+++|..++.+|..+ ..+|++|++++|..+..+|.. |++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 4556888889998888888872 1 2358888888887788888765 358888999888667777754 455
Q ss_pred eeCCCC--CCCcccccCC
Q 002187 666 LENDQT--DSLRYLPVGI 681 (955)
Q Consensus 666 L~l~~~--~~l~~~p~~i 681 (955)
|++.++ ..+..+|.++
T Consensus 117 L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGL 134 (426)
T ss_pred EEeCCCCCcccccCcchH
Confidence 555443 2345555543
No 173
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.28 E-value=0.0025 Score=71.30 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=87.6
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.++.|.+..+++|.+.+.-+-. -+-...+-+.++|.+|+|||++|+++++. ....| +.|..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4678999999888887742110 01123456789999999999999999993 33333 2222111
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc--------cC------hhhHHhhccC--CCCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY--------CK------WEPFYHCLKD--GLHE 313 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------~~------~~~l~~~l~~--~~~g 313 (955)
+ .....+. ....+...+.....+.+.+|+||+++.-.. .. ...+...+.. ...+
T Consensus 253 -L----~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -L----IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -h----hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1111110 011122222223345678999999742100 00 1112222211 1235
Q ss_pred cEEEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhhc
Q 002187 314 SKILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 314 s~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 354 (955)
.+||.||...... ..+ .-...++++..+.++..++|..++.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 6788888764333 222 1245789999999999999987753
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0057 Score=65.56 Aligned_cols=96 Identities=8% Similarity=0.091 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCC
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKST 359 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 359 (955)
+++-++|+|+++..+...-..+...+-.-..++.+|++|.. ..+...+ .-...+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45669999999776655666677777766667777777664 4444433 336788999999999988886531
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 360 VERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
.. ...+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1225678999999998765443
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0014 Score=78.43 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=86.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc-c---CCceEEEEeCCcccHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-K---FEKRMWICVSELFDEFRIA 252 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~ 252 (955)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++....... . .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 358999999999999997532 12346899999999999999987321111 1 13444421 11111
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCc--------cccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 253 RAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNE--------DYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
+.+. ....+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-+||-+|...
T Consensus 254 ------laG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 254 ------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred ------hccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 1111 11112222222222223 346779999999531 1112222233322222 24455555544
Q ss_pred hHHHh-------hcCcceEeCCCCChhhHHHHhHhh
Q 002187 324 TVACI-------MGSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 324 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
+.... ..-...+.+++.+.+++.+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 43221 122457999999999999998764
No 176
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.26 E-value=0.0032 Score=76.50 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=72.3
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+.+.+..... +.+....++.++|+.|+|||+||+.++.. . +...+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 4578999999998888764211 01223457889999999999999999883 2 23345666655322111
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCce-EEEEEeCCCCccccChhhHHhhccCC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKK-FLLVLDDVWNEDYCKWEPFYHCLKDG 310 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~ 310 (955)
...+.+...+....++ ...+.+.++.++ -+|+||+++...++.+..+...+..+
T Consensus 526 --~~~lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred --HHHHhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1122222111111111 112333444344 49999999877777777777766544
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.25 E-value=0.0031 Score=61.57 Aligned_cols=45 Identities=24% Similarity=0.179 Sum_probs=36.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
-.++||-++.++++.-.-. .++..-+.|.|++|+||||-+..+++
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 3579999998888766553 34667789999999999998888877
No 178
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0039 Score=69.62 Aligned_cols=119 Identities=22% Similarity=0.249 Sum_probs=75.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF 285 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 285 (955)
++.|.|+-++||||+++.+... .... .+++..-+......-+.+... .+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 9999999999999999666552 1111 455543332211111111111 11111122778
Q ss_pred EEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHH-----Hhh-cCcceEeCCCCChhhHHHHh
Q 002187 286 LLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVA-----CIM-GSTNIISINVLSEMGCWLVF 349 (955)
Q Consensus 286 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf 349 (955)
.|+||.|.. ...|+.....+.+.++. +|++|+-+.... ... |-...+.+.|||..|...+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999964 46799988888877666 888888775433 222 33568899999999987754
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0061 Score=66.43 Aligned_cols=162 Identities=9% Similarity=0.058 Sum_probs=90.1
Q ss_pred cccc-chhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 178 EIVG-REKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 178 ~~vG-r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.++| -+..++.+.+.+... .-.....++|+.|+||||+|+.+.+..--....... .+.. -..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~----C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGT----CTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCc----CHHHHHHh
Confidence 4667 566677777777432 234567899999999999998886632111101000 0000 00000000
Q ss_pred HHHcC------CCCCCCChHHHHHHHHHH----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhH
Q 002187 257 EALTG------SASNFGEFQSLMQHIQEC----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETV 325 (955)
Q Consensus 257 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 325 (955)
..-.. ........+++.+.+... ..+++=++|+|++...+......+...+.....++.+|++|.+ ..+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000111223333322221 2245557999999766656667788888776677777777765 334
Q ss_pred HHhh-cCcceEeCCCCChhhHHHHhHh
Q 002187 326 ACIM-GSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 326 ~~~~-~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
...+ .-...+++.+++.++....+..
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3333 3367899999999999888865
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.22 E-value=0.0028 Score=77.84 Aligned_cols=138 Identities=17% Similarity=0.304 Sum_probs=78.0
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++. .-..-...+.+.++.-...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-----
Confidence 4689999999998888864321 01223457889999999999999999873 2122223344544432111
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCce-EEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKK-FLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTR 321 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 321 (955)
.....+.+..++....+. ...+.+.++.++ -+|+||++.......+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112223222222111111 112333333333 599999998766667777777665431 2233778887
Q ss_pred C
Q 002187 322 K 322 (955)
Q Consensus 322 ~ 322 (955)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.00017 Score=70.04 Aligned_cols=34 Identities=32% Similarity=0.638 Sum_probs=27.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVK-KKFEKRMW 239 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 239 (955)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999965443 45777775
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.18 E-value=0.0038 Score=60.26 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=76.7
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc------------------cCCceEEEEe
Q 002187 181 GREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK------------------KFEKRMWICV 242 (955)
Q Consensus 181 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~v 242 (955)
|-++..+.+.+.+... .-...+.++|..|+||+|+|..+.+..--.. ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4556667777777432 1234678999999999999988876421111 1222333332
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 243 SELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 243 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
.... ..-..+++. .+.+.+ .++.=++|+||++....+.+..++..+-.....+++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011223322 222222 2345689999998877778888998888877889988
Q ss_pred EecCChh-HHHhh-cCcceEeCCCCC
Q 002187 318 ITTRKET-VACIM-GSTNIISINVLS 341 (955)
Q Consensus 318 vTtr~~~-v~~~~-~~~~~~~l~~L~ 341 (955)
++|.+.. +...+ .-...+.++++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8887643 43333 334566666654
No 183
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.0006 Score=65.26 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=76.4
Q ss_pred cccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccc
Q 002187 806 LTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFV 885 (955)
Q Consensus 806 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~ 885 (955)
+.+...++|++| .+..++.|..++.|..|.|.++. +.+|...+.. .+|+|+.|.+.++ ++.++...
T Consensus 41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~-----------~~p~l~~L~LtnN-si~~l~dl 106 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDT-----------FLPNLKTLILTNN-SIQELGDL 106 (233)
T ss_pred ccccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccchhh-----------hccccceEEecCc-chhhhhhc
Confidence 467788999988 66677778888999999996655 7777765432 6899999999886 34433221
Q ss_pred cccccccccCcccceeeeccCcCCCCCCC----CCCCCCCcCeEEEecC
Q 002187 886 TAVKGEIRIMPRLSSLSIVYCPKLKALPD----HLLQKTTLQRLSIFSC 930 (955)
Q Consensus 886 ~~~~~~~~~~~~L~~L~i~~c~~l~~lp~----~~~~l~~L~~L~l~~c 930 (955)
. .+..||+|+.|.+-++| ....+. .+..+|+|+.|+..+-
T Consensus 107 ~----pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 107 D----PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred c----hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 1 35689999999999988 443332 2456788999988764
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.0002 Score=84.85 Aligned_cols=131 Identities=19% Similarity=0.148 Sum_probs=91.8
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc--ccccccCCCCcceEEeecCCCccccchhhcCCCCC
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE--IPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNL 639 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~L 639 (955)
-.+|+.|++.+.... ...++...-.-+|.|+.|.+++-.+.. +..-..++++|+.||+|+|+ ++.+ ..+++|+||
T Consensus 121 r~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccH
Confidence 468899999886532 333444555788999999999977532 34456789999999999999 9988 569999999
Q ss_pred CEEeeCCCCCccccC--ccccCCCCCcEeeCCCCCCCccc--cc----CCCCCCCCCccceeEec
Q 002187 640 ERLNVDSCSNLRELP--QGIGKLRKLMHLENDQTDSLRYL--PV----GIGELISLRRVSKLVVG 696 (955)
Q Consensus 640 q~LdL~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~--p~----~i~~l~~L~~L~~~~~~ 696 (955)
|+|.+++-. ++.-+ ..+.+|++|++|+++........ .. --..|++|+.|+.....
T Consensus 198 q~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999998754 33322 24678999999999876432221 10 01236677777665443
No 185
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.14 E-value=0.0093 Score=66.33 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=87.2
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 176 ESEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
-.++.|.+..+++|.+.+..+-. -+-...+-+.++|.+|.|||++|+++++. ....| +.+..+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s----- 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS----- 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH-----
Confidence 34689999888888776632110 01234567889999999999999999984 22222 222111
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc------c----cC----hhhHHhhccC--CCC
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED------Y----CK----WEPFYHCLKD--GLH 312 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------~----~~----~~~l~~~l~~--~~~ 312 (955)
. +.....+. ....+...+.......+.+|+||+++.-. . .. +..+...+.. ...
T Consensus 214 -~----l~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 -E----FVQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred -H----HHHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1 11111110 11122222333334678899999985310 0 00 1122222221 224
Q ss_pred CcEEEEecCChhHH-Hh-hc---CcceEeCCCCChhhHHHHhHhhh
Q 002187 313 ESKILITTRKETVA-CI-MG---STNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 313 gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
+..||.||...... .. .. -...+.++..+.++..++|+...
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 56788888754322 22 11 24568899999999888888665
No 186
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.14 E-value=0.0033 Score=71.45 Aligned_cols=165 Identities=14% Similarity=0.158 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc-----CCceEEEEeCC
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-----FEKRMWICVSE 244 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~ 244 (955)
.++.|.+..+++|.+.+..+-. .+-...+-+.++|++|.|||++|+++++.. ... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 4688999999988887642110 011234568899999999999999999943 222 12344555443
Q ss_pred cccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc-------ccCh-----hhHHhhccCC-
Q 002187 245 LFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED-------YCKW-----EPFYHCLKDG- 310 (955)
Q Consensus 245 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~~-----~~l~~~l~~~- 310 (955)
.. ++....+. .......+....++.. .+++++|+||+++.-. ..+. ..+...+...
T Consensus 260 ~e--------Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 PE--------LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred hh--------hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 11 11110000 0001112222222222 3578999999996421 0111 1233333221
Q ss_pred -CCCcEEEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhh
Q 002187 311 -LHESKILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 311 -~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
..+..||.||...... ..+ .-+..++++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 1344566666554322 121 114568999999999999998876
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0011 Score=77.57 Aligned_cols=123 Identities=19% Similarity=0.371 Sum_probs=80.2
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 250 (955)
..++|.+..++.+.+.+..... +.+....+...+|+.|||||.||++++. .-| +..+-++.|+...-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~DMSEy~Ek-- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRIDMSEYMEK-- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeechHHHHHH--
Confidence 4789999999999998864432 2344567788899999999999999887 234 34455554443221
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE-EEEEeCCCCccccChhhHHhhccCC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF-LLVLDDVWNEDYCKWEPFYHCLKDG 310 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 310 (955)
.-++.|-+.+++--.-++ .-.|-+..+.++| +|.||++....++..+-+...|.+|
T Consensus 564 ---HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 ---HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 223444444433222222 2235556677888 8889999877776677777777665
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.11 E-value=0.0054 Score=75.40 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++||+.++.+++..|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999996532 224558999999999999999884
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.00072 Score=68.52 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICV 242 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 242 (955)
.++|+|..|.|||||+..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 678999999999999998887 46678877776654
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.11 E-value=0.0026 Score=78.46 Aligned_cols=138 Identities=18% Similarity=0.308 Sum_probs=80.0
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+...+..... +......++.++|+.|+|||++|+.+... ....-...+.++++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 4689999999999998875321 11223567889999999999999999873 222222334455554322111
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCc-eEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRK-KFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTR 321 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 321 (955)
...+.+..++....++ ...+.+.++.+ ..+|+||++....++.+..+...+..+. ..+-||+||.
T Consensus 640 --~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred --HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1222222211111110 11233333333 3499999998877777888887775541 2344777776
Q ss_pred C
Q 002187 322 K 322 (955)
Q Consensus 322 ~ 322 (955)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 4
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.10 E-value=0.013 Score=61.81 Aligned_cols=42 Identities=26% Similarity=0.258 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIA 252 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 252 (955)
-|.+.|.+|+|||++|+.+++ .... ..+.+++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 467899999999999999987 2222 24566666655554443
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.07 E-value=0.002 Score=78.92 Aligned_cols=136 Identities=22% Similarity=0.349 Sum_probs=77.7
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||.+|+.++.. +-+.....+=++++...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-----
Confidence 4789999999999998854311 12334568899999999999999988773 2111122222333321111
Q ss_pred HHHHHHcCCCCCC---CChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEe
Q 002187 254 AIIEALTGSASNF---GEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILIT 319 (955)
Q Consensus 254 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 319 (955)
.-...+.+..++. .....+...++ +...-+|+||++...+++.++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1112222222111 11122222222 2344599999998766666777777666552 44567777
Q ss_pred cCC
Q 002187 320 TRK 322 (955)
Q Consensus 320 tr~ 322 (955)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.014 Score=62.61 Aligned_cols=175 Identities=11% Similarity=0.006 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC---c-----eEEEEeCCcccHHHHHHHHHH
Q 002187 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE---K-----RMWICVSELFDEFRIARAIIE 257 (955)
Q Consensus 186 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~~~~~i~~ 257 (955)
-+.+.+.+... .-.....+.|+.|+||+++|+.++...--..... | .-++..+..+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 34555555432 1234677899999999999998876321111110 0 000111111111100
Q ss_pred HHcCCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-c
Q 002187 258 ALTGSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-G 330 (955)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~ 330 (955)
.......-..+++.+ +.+.+ .+++=++|+|+++.........+...+-.-..++.+|++|.+ ..+...+ .
T Consensus 80 --~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000001112333332 22222 255668889999877767778888888777777777777765 3444343 3
Q ss_pred CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 331 STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
-...+.+.+++.++..+.+..... . . ...+...+..++|.|+.+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 367899999999999988876531 1 1 112556788899999644
No 194
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.06 E-value=0.0027 Score=70.77 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++||++.++.+...+.... -|.|.|.+|+|||++|+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 368999999999999987655 3889999999999999999883
No 195
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.99 E-value=0.0025 Score=63.25 Aligned_cols=132 Identities=22% Similarity=0.205 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC----Ccc-----cH--
Q 002187 180 VGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS----ELF-----DE-- 248 (955)
Q Consensus 180 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~-- 248 (955)
..+..+....++.|.. ..++.+.|.+|.|||.||.+..-+.-..+.|+.++++.-. +.. +.
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3456667777777762 3389999999999999998887765556788888777421 110 00
Q ss_pred --HHHHHHHHHHHcCCCCCCCChHHHHHH------HHHHhcCc---eEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 249 --FRIARAIIEALTGSASNFGEFQSLMQH------IQECVQRK---KFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 249 --~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
.-.+.-+...+..-. .....+.+.+. --.+++|+ ..+||+|++.+.+..++..+ +...+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 001112222222111 11112221110 00144554 35999999987655444444 55567889999
Q ss_pred EecCCh
Q 002187 318 ITTRKE 323 (955)
Q Consensus 318 vTtr~~ 323 (955)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 997543
No 196
>PRK12377 putative replication protein; Provisional
Probab=96.99 E-value=0.0015 Score=67.46 Aligned_cols=101 Identities=19% Similarity=0.136 Sum_probs=56.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..+.++|..|+|||.||.++++. .......++++++. +++..+-...... ..... +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cCC
Confidence 47899999999999999999994 33344445677554 3444443333211 11111 22222 345
Q ss_pred EEEEEeCCCCccccChhh--HHhhccCC-CCCcEEEEecCC
Q 002187 285 FLLVLDDVWNEDYCKWEP--FYHCLKDG-LHESKILITTRK 322 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 322 (955)
=||||||+-......|.. +...+... .+.--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 599999995543344543 33333321 122337888764
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.034 Score=59.66 Aligned_cols=93 Identities=10% Similarity=0.056 Sum_probs=67.0
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCC
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKST 359 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 359 (955)
+++=++|+|++..........+...+-.-..++.+|++|.+ ..+...+ +-...+.+.+++.++..+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 44558899999877777788888888776677777666655 4444443 336789999999999998886531 0
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 360 VERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
. ....+++.++|.|+.+..+
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHHH
Confidence 1 1346789999999977554
No 198
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.003 Score=65.99 Aligned_cols=100 Identities=21% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF 285 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 285 (955)
-+.++|.+|+|||.||..+.+. .......++|+.+ .+++..+..... ....+.. +. .+ .+-=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~-~l-~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IA-KL-DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HH-HH-hcCC
Confidence 4899999999999999999984 3333334566653 344444433221 1122222 22 22 1334
Q ss_pred EEEEeCCCCccccChh--hHHhhccCCCCCcEEEEecCCh
Q 002187 286 LLVLDDVWNEDYCKWE--PFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 286 LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 323 (955)
||||||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999644333332 2444443211123588888764
No 199
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.90 E-value=0.0056 Score=65.58 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=71.2
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 181 GREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 181 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
+|....+...+++..-.. +...+-+.++|..|+|||.||.++++... ..-..+.+++++ .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555556666643221 12345789999999999999999999532 222335566553 45555544442
Q ss_pred CCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhh--HHhhc-cCC-CCCcEEEEecCC
Q 002187 261 GSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEP--FYHCL-KDG-LHESKILITTRK 322 (955)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 322 (955)
.. +.. ..+.. + .+-=||||||+-.+....|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~~-----~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 122 22222 2 244589999997666667754 44443 221 234568888864
No 200
>PRK07261 topology modulation protein; Provisional
Probab=96.90 E-value=0.0024 Score=62.42 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=40.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVK-KKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
.|.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999988643221 133444452111 11233455566666676666
Q ss_pred EEEEEeCCC
Q 002187 285 FLLVLDDVW 293 (955)
Q Consensus 285 ~LlVlDdvw 293 (955)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5778874
No 201
>CHL00176 ftsH cell division protein; Validated
Probab=96.90 E-value=0.0093 Score=70.28 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=95.7
Q ss_pred CccccchhHHHHHHH---HHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVN---RLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~---~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.++..+++.+ .+..... -+....+-|.++|++|+|||++|+.+++.. . .-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 468888766555544 4332211 012234568999999999999999998842 2 123333321 1
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc----------ccChhh-HHhh---ccC--CCCCc
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED----------YCKWEP-FYHC---LKD--GLHES 314 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~-l~~~---l~~--~~~gs 314 (955)
+ .....+ .....+...+.......+++|+|||++.-. ...+.. +... +.. ...+-
T Consensus 252 f----~~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 F----VEMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred H----HHHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1 111100 011233344455556788999999995321 111222 2222 211 23455
Q ss_pred EEEEecCChhHH-Hhh-c---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC
Q 002187 315 KILITTRKETVA-CIM-G---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG 378 (955)
Q Consensus 315 ~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 378 (955)
.||.||...... ..+ . -...+.++..+.++-.++++.++.... .. .......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LS----PDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cc----hhHHHHHHHhcCCC
Confidence 677777664322 222 1 246788888899999999988764311 11 12234667777777
No 202
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0065 Score=69.04 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
-+.+.+|.++..++|++++.-..-.+.-+=++++.+|++|||||++|+.++. ...+.|- -++|+.-.|+.+|--
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkG- 482 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKG- 482 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcc-
Confidence 3557899999999999998643222334567999999999999999999998 4445542 345555555543210
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCC
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWN 294 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~ 294 (955)
-.....+.+. ..+++.+++ .+-.+-|+.||.|+.
T Consensus 483 ----HRRTYVGAMP-GkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 ----HRRTYVGAMP-GKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred ----cceeeeccCC-hHHHHHHHh-hCCCCceEEeehhhh
Confidence 0001111111 233333333 234567999999954
No 203
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.89 E-value=3.6e-05 Score=86.40 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=93.4
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~ 617 (955)
.++...++..|.......+.. -++.|++|+++.|.+.... .+..|+.|+.|||++|.+..+|.- ...+. |..
T Consensus 164 n~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhhhH-----HHHhcccccccccccchhccccccchhhhh-hee
Confidence 355556666666554444444 6789999999998743322 378899999999999999988742 23344 999
Q ss_pred EEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCc--cccCCCCCcEeeCCCCC
Q 002187 618 LNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQ--GIGKLRKLMHLENDQTD 672 (955)
Q Consensus 618 L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 672 (955)
|.+++|. ++.|-. |.+|++|+.||++.|- +..... -++.|..|+.|++.||.
T Consensus 237 L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 237 LNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999998 888875 8999999999999986 544321 25778889999998873
No 204
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.87 E-value=0.047 Score=59.64 Aligned_cols=211 Identities=10% Similarity=0.082 Sum_probs=126.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHH-HHHhcchhhhccCCceEEEEeCCc---ccHHHHHHHHHH
Q 002187 182 REKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLA-QFAYNNVDVKKKFEKRMWICVSEL---FDEFRIARAIIE 257 (955)
Q Consensus 182 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~ 257 (955)
|.+..++|..||.... -..|.|.|+-|.||++|+ .++.++.+ .++.+.|.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997543 458999999999999999 77776422 2566665432 233445555555
Q ss_pred HHcC-----------------------CCCC--CCChHHHHHHH-------HH-------------------Hhc---Cc
Q 002187 258 ALTG-----------------------SASN--FGEFQSLMQHI-------QE-------------------CVQ---RK 283 (955)
Q Consensus 258 ~l~~-----------------------~~~~--~~~~~~~~~~l-------~~-------------------~l~---~k 283 (955)
+++- ...+ +.-..++.+.+ ++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 5542 1111 11112222211 11 111 12
Q ss_pred eEEEEEeCCCCcccc---ChhhHHhh--ccCCCCCcEEEEecCChhHHH----hhcC--cceEeCCCCChhhHHHHhHhh
Q 002187 284 KFLLVLDDVWNEDYC---KWEPFYHC--LKDGLHESKILITTRKETVAC----IMGS--TNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 284 ~~LlVlDdvw~~~~~---~~~~l~~~--l~~~~~gs~iivTtr~~~v~~----~~~~--~~~~~l~~L~~~~~~~lf~~~ 352 (955)
+-+||+|+.-..... -|+.+..- ..-..+-.+||++|-+..... .+.. ...+.|.-.+.+.|..+..++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 569999998542211 12222110 011235678999987754443 3332 567889999999999999888
Q ss_pred hcCCCCC------------CCc----chHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHH-HHHHHHh
Q 002187 353 AFSGKST------------VER----ENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEK-EWQNILE 404 (955)
Q Consensus 353 ~~~~~~~------------~~~----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~-~w~~~~~ 404 (955)
....... ... .....-....++..||=-.-+..+++.++...+++ .-..+.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7543110 000 12334456788999999999999999999987764 3334444
No 205
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.87 E-value=0.021 Score=56.54 Aligned_cols=123 Identities=21% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 174 IDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 174 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
++-..++|.+...+.+++--..-. .+...--|.+||.-|+||++|++++.+ .+....-.. |.|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcHH--------
Confidence 344568999988888776433211 112233588999999999999999999 454444332 222221
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCC-ccccChhhHHhhccCC---CCCcEEEEecCCh
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWN-EDYCKWEPFYHCLKDG---LHESKILITTRKE 323 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~~ 323 (955)
+..++..+...|+. ...||.|..||+.= ++...+..++..+..+ .+...++..|.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11122223333221 36899999999853 3345677777777654 3444555555543
No 206
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.85 E-value=0.018 Score=66.94 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=93.2
Q ss_pred CCccccchhHHHHHHHHHh---cCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNRLL---CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+...+++.+.+. .... .+....+-+.++|++|+|||++|+.+++.. ... ++.++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~---- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS---- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----
Confidence 3478898876665554332 2110 012234458899999999999999999842 222 2333221
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc----------ccChhhH----Hhhcc--CCCCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED----------YCKWEPF----YHCLK--DGLHE 313 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l----~~~l~--~~~~g 313 (955)
++ .....+ .....+...+.......+.+|+||+++.-. ...+... ...+. ....+
T Consensus 123 ~~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DF----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 111111 011223333444444567899999995411 0112222 11121 12234
Q ss_pred cEEEEecCChh-HHHhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC
Q 002187 314 SKILITTRKET-VACIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL 379 (955)
Q Consensus 314 s~iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 379 (955)
-.||.||.... +-..+ .-...+.++..+.++-.++|..+...... ....+ ...+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 45666776543 22211 12457889999998889998876632211 11112 34677777763
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.84 E-value=0.038 Score=63.09 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=118.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhh---h---ccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDV---K---KKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~---~~F~~~~wv~vs~~~~~~~ 250 (955)
..+-+|+.+..+|.+++..--.+ ++.-+.+.|.|.+|.|||..+..|.+.... + ..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 45678999999999988654432 234458999999999999999999985321 1 1232 34555555567899
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhc-----CceEEEEEeCCCCccccChhhHHhhccC-CCCCcEEEEecCC--
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQ-----RKKFLLVLDDVWNEDYCKWEPFYHCLKD-GLHESKILITTRK-- 322 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~-- 322 (955)
++..|..++.+.... .......+..+.. .+..+|++|+++.--...-+-+...|.+ ..++||++|-+=.
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999998765322 2233334444443 4578999998743111111223333332 4567886665421
Q ss_pred hhHHH-hhc-------CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHH
Q 002187 323 ETVAC-IMG-------STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACL 389 (955)
Q Consensus 323 ~~v~~-~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 389 (955)
..... .+. ....+...|-+.++-.++...+..+. +.......+-++++|+.--|-.-.|+...-++
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11111 111 12345666677777666666554332 11223334445555555555555555444443
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.82 E-value=0.0054 Score=75.53 Aligned_cols=138 Identities=16% Similarity=0.278 Sum_probs=78.7
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+.+.+..... +.+.....+.++|+.|+|||+||+.+++. +-+.-...+-++.++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 5689999999999888853221 11223456778999999999999998872 2111123344444442221111
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCce-EEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKK-FLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTR 321 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 321 (955)
..+.+..++....++ ...+.+.++.++ -+|+||++....++.+..+...+..+. ..+-||+||.
T Consensus 585 ---~~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred ---HHhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 112122111111111 112344455555 489999998777777777777766541 3455677776
Q ss_pred C
Q 002187 322 K 322 (955)
Q Consensus 322 ~ 322 (955)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.012 Score=63.63 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
+.++|+++|.+|+||||++..++... ..+=..+..++.... ....+-++...+.++.......+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998733 222123445554322 112222333333333322222344555555544332
Q ss_pred C-ceEEEEEeCCCC
Q 002187 282 R-KKFLLVLDDVWN 294 (955)
Q Consensus 282 ~-k~~LlVlDdvw~ 294 (955)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 2 223777887643
No 210
>PRK06526 transposase; Provisional
Probab=96.81 E-value=0.0029 Score=65.80 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=52.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
.-+.|+|.+|+|||+||..+.+... +..+ .+.|+ +..+++..+...... . .....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~~-----~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHHA-----G---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHhc-----C---cHHHHHHHh--ccC
Confidence 3589999999999999999987432 2222 23343 233344444322110 1 112223322 234
Q ss_pred EEEEEeCCCCccccChh--hHHhhccC-CCCCcEEEEecCCh
Q 002187 285 FLLVLDDVWNEDYCKWE--PFYHCLKD-GLHESKILITTRKE 323 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 323 (955)
-+||+||+.......|. .+...+.. ..+++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999643222222 23333322 12344 88888764
No 211
>PRK09183 transposase/IS protein; Provisional
Probab=96.81 E-value=0.0046 Score=64.75 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=52.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF 285 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 285 (955)
.+.|+|..|+|||+||..+++....+ . ..+.++. ..++...+...... .. +...+++.+ .+.-
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~-G-~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~d 166 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRA-G-IKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAPR 166 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCCC
Confidence 67799999999999999998742221 1 2233443 22333333222111 01 222233322 3445
Q ss_pred EEEEeCCCCccccChh--hHHhhccCC-CCCcEEEEecCCh
Q 002187 286 LLVLDDVWNEDYCKWE--PFYHCLKDG-LHESKILITTRKE 323 (955)
Q Consensus 286 LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 323 (955)
++|+||+.......+. .+...+... .+++ +|+||...
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 9999999754333333 244433221 2344 88888753
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.0072 Score=62.22 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=57.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
...+.++|.+|+|||+||.++++.. ...-..+++++ ..+++..+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 3478899999999999999999953 23333455664 34444444333321 1111222 223344 3
Q ss_pred eEEEEEeCCCCccccChhh--HHhhccCC-CCCcEEEEecCC
Q 002187 284 KFLLVLDDVWNEDYCKWEP--FYHCLKDG-LHESKILITTRK 322 (955)
Q Consensus 284 ~~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 322 (955)
.=+|||||+......+|+. +...+... .+.-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3488899997655556664 32222211 122347777764
No 213
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.027 Score=61.16 Aligned_cols=177 Identities=10% Similarity=0.060 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC---ce-----EEEEeCCcccHHHHHHHHHH
Q 002187 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE---KR-----MWICVSELFDEFRIARAIIE 257 (955)
Q Consensus 186 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~-----~wv~vs~~~~~~~~~~~i~~ 257 (955)
-+++.+.+... .-...+.+.|..|+||+++|..++...--...-+ |. -++.....+|+..+..
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p---- 81 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP---- 81 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec----
Confidence 45566666432 2345777999999999999988766321111000 00 0111111111110000
Q ss_pred HHcCCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-c
Q 002187 258 ALTGSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-G 330 (955)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~ 330 (955)
......-..+++.+ +.+.+ .+++=++|+|+++.........+...+-.-..++.+|++|.+ ..+...+ +
T Consensus 82 ---~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 82 ---EKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ---ccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00001122333333 22222 256669999999877666777888888776677777777665 4455443 3
Q ss_pred CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHH
Q 002187 331 STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAK 384 (955)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 384 (955)
-...+.+.+++.++..+.+..... . + .+.+..++..++|.|..+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~-----~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT-----M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC-----C-C---HHHHHHHHHHcCCCHHHHH
Confidence 356889999999999887765321 1 1 1236678999999996543
No 214
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.78 E-value=0.0002 Score=63.95 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=40.3
Q ss_pred cCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCcc
Q 002187 587 DKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQG 656 (955)
Q Consensus 587 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~ 656 (955)
.+++.+..|+|++|.+.++|..+..++-||.|+++.|. +...|.-|..|.+|-.||..++. ...+|-+
T Consensus 74 ~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 74 IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 34445556666666666666666666666666666666 55666655556666666665554 4455544
No 215
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0055 Score=60.41 Aligned_cols=36 Identities=31% Similarity=0.608 Sum_probs=28.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEE
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWI 240 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 240 (955)
...+|.+.|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 445999999999999999999998 455556555555
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.75 E-value=0.0014 Score=64.24 Aligned_cols=100 Identities=27% Similarity=0.388 Sum_probs=50.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
.-+.++|..|+|||.||..+.+..- .+=..+.|+.++ +++ ..+.... .....+.. ++ .+.+ -
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~v~f~~~~------~L~----~~l~~~~-~~~~~~~~---~~-~l~~-~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAI--RKGYSVLFITAS------DLL----DELKQSR-SDGSYEEL---LK-RLKR-V 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEHH------HHH----HHHHCCH-CCTTHCHH---HH-HHHT-S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhc--cCCcceeEeecC------cee----ccccccc-cccchhhh---cC-cccc-c
Confidence 4699999999999999999988432 222235666533 333 3333221 11122222 22 2332 3
Q ss_pred EEEEEeCCCCccccChhh--HHhhccCC-CCCcEEEEecCCh
Q 002187 285 FLLVLDDVWNEDYCKWEP--FYHCLKDG-LHESKILITTRKE 323 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 323 (955)
=||||||+-......|.. +...+... .++ .+||||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 478899996544334432 22222211 123 588888753
No 217
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0096 Score=65.37 Aligned_cols=143 Identities=16% Similarity=0.167 Sum_probs=86.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc-------------------cCCceE
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-------------------KFEKRM 238 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 238 (955)
.++|-+....++..+..... .....+.++|+.|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46777788888888886432 1233589999999999999999988432111 113344
Q ss_pred EEEeCCccc---HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcE
Q 002187 239 WICVSELFD---EFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESK 315 (955)
Q Consensus 239 wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 315 (955)
.+..+.... ..+..+++.+....... .++.-++++|+++....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 554444433 23333333333322110 35677999999987665555667776766677788
Q ss_pred EEEecCC-hhHHHhhc-CcceEeCCCC
Q 002187 316 ILITTRK-ETVACIMG-STNIISINVL 340 (955)
Q Consensus 316 iivTtr~-~~v~~~~~-~~~~~~l~~L 340 (955)
+|++|.. ..+...+. ....+.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCc
Confidence 8888873 33333322 2456777663
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.72 E-value=0.0018 Score=69.43 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=42.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcch
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
+++|.++.++++++++...........+++.++|++|.||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976543223457899999999999999999999854
No 219
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.71 E-value=0.068 Score=58.64 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh--ccC---CceEEEEeCCcccHHHHHHHHHH
Q 002187 183 EKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK--KKF---EKRMWICVSELFDEFRIARAIIE 257 (955)
Q Consensus 183 ~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~vs~~~~~~~~~~~i~~ 257 (955)
+.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+..+-. ..+ ..-+|-......-...++..|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 445567777776543 2478899999999999999999998844332 011 11234444333334455555555
Q ss_pred HHcCCCC-----------------------------C-------------------------------------CCChHH
Q 002187 258 ALTGSAS-----------------------------N-------------------------------------FGEFQS 271 (955)
Q Consensus 258 ~l~~~~~-----------------------------~-------------------------------------~~~~~~ 271 (955)
++..... . ..+.++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
T PF07693_consen 79 QLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEE 158 (325)
T ss_pred HHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHH
Confidence 5532100 0 001111
Q ss_pred HHHHHHHHhc--CceEEEEEeCCCCccccChhhHHhhccC--CCCCcEEEEecCChhHHHhhcC----------------
Q 002187 272 LMQHIQECVQ--RKKFLLVLDDVWNEDYCKWEPFYHCLKD--GLHESKILITTRKETVACIMGS---------------- 331 (955)
Q Consensus 272 ~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~---------------- 331 (955)
....+.+.+. ++|.+||+||++...++....+...+.. ..++..+|+..-.+.++..+..
T Consensus 159 ~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 159 LISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred HHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH
Confidence 3334445553 5899999999987655544444443332 2367777777766655544322
Q ss_pred ---cceEeCCCCChhhHHHHhHhh
Q 002187 332 ---TNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 332 ---~~~~~l~~L~~~~~~~lf~~~ 352 (955)
.-++.+++.+..+-..+|...
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHH
Confidence 124666666666655555444
No 220
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.70 E-value=0.0048 Score=62.78 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH----cCC-----CCCCCChHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL----TGS-----ASNFGEFQSLM 273 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l----~~~-----~~~~~~~~~~~ 273 (955)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+ +++.. ... ..+..+.....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4579999999999999999888763 333456789999876 66555443 33321 000 01111222334
Q ss_pred HHHHHHhcC-ceEEEEEeCC
Q 002187 274 QHIQECVQR-KKFLLVLDDV 292 (955)
Q Consensus 274 ~~l~~~l~~-k~~LlVlDdv 292 (955)
..+.+.+.. +.-+||+|.+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHhhcCccEEEEeCc
Confidence 444444443 3457888877
No 221
>PRK06921 hypothetical protein; Provisional
Probab=96.69 E-value=0.0065 Score=63.82 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=54.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhcc-CCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKK-FEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
..-+.++|..|+|||.||.++++. +... -..+++++.. +++..+...+ +.....+. .+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hhc-
Confidence 456899999999999999999994 3333 3445677642 2333332221 11111222 222
Q ss_pred ceEEEEEeCCC-----CccccChhh--HHhhccCC-CCCcEEEEecCC
Q 002187 283 KKFLLVLDDVW-----NEDYCKWEP--FYHCLKDG-LHESKILITTRK 322 (955)
Q Consensus 283 k~~LlVlDdvw-----~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 322 (955)
+-=||||||+. .+...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34599999993 222234543 43333221 123458888864
No 222
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.047 Score=60.08 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=85.7
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECV 280 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (955)
...+.-+.+.|++|+|||+||..++.+ ..|..+--++...-... .+......+........
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~---------------sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGL---------------SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCc---------------cHHHHHHHHHHHHHHhh
Confidence 345667788999999999999999873 55664432221110000 00011112222333334
Q ss_pred cCceEEEEEeCCCCccccChhhHHh------------hc---cCCCCCcEEEEecCChhHHHhhcC----cceEeCCCCC
Q 002187 281 QRKKFLLVLDDVWNEDYCKWEPFYH------------CL---KDGLHESKILITTRKETVACIMGS----TNIISINVLS 341 (955)
Q Consensus 281 ~~k~~LlVlDdvw~~~~~~~~~l~~------------~l---~~~~~gs~iivTtr~~~v~~~~~~----~~~~~l~~L~ 341 (955)
+..=-.||+||+.. .-+|-.+.. .+ |..++.--|+-||....+.+.|+- ...|.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 45566899999943 234433322 22 222223336667777888887754 4578899998
Q ss_pred h-hhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhc
Q 002187 342 E-MGCWLVFEPLAFSGKSTVERENLEEIGREITRKC 376 (955)
Q Consensus 342 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 376 (955)
. ++..+.++..- .-.+.+...++++...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77777776532 122344556667777766
No 223
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.64 E-value=0.0088 Score=64.56 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCc-ccHHHHHHHHHHHHcCC
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEK-RMWICVSEL-FDEFRIARAIIEALTGS 262 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~ 262 (955)
-..++++.+..-. .-.-+.|+|..|+|||||++.+++... .++-+. .+|+.+.+. .++.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3455788776432 223569999999999999999988432 223244 467777665 46788888887777654
Q ss_pred CCCCCChH-----HHHHHHHHHh--cCceEEEEEeCCC
Q 002187 263 ASNFGEFQ-----SLMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 263 ~~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..+..... .....+.+++ ++++.+||+|++-
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 43332221 1222233333 5899999999993
No 224
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.0039 Score=62.10 Aligned_cols=112 Identities=12% Similarity=-0.005 Sum_probs=61.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCC--CCChHHHHHHHHHHhcC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASN--FGEFQSLMQHIQECVQR 282 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 282 (955)
.++.|+|..|.||||+|..... +...+-..++.+. ..++.+.....++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 3778999999999999988887 3333333333342 1122222233445555432211 2234455555555 233
Q ss_pred ceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 283 KKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 283 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
+.-+||+|.+.--+.++...+...+ ...|..||+|.+..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 4458999999432222222333332 23578899999874
No 225
>PHA00729 NTP-binding motif containing protein
Probab=96.61 E-value=0.01 Score=59.54 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+..-|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999884
No 226
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.048 Score=59.13 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCC
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKST 359 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 359 (955)
+++-++|+|+++......+..+...+-.-.+++.+|++|.+ ..+...+ .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 44558899999887778888898888877677766666554 4454443 335789999999999998887641 1
Q ss_pred CCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 360 VERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 360 ~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
++ ...++..++|.|..+..+.
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHHH
Confidence 11 2235778899997655443
No 227
>PRK04132 replication factor C small subunit; Provisional
Probab=96.59 E-value=0.034 Score=67.05 Aligned_cols=156 Identities=10% Similarity=-0.024 Sum_probs=98.3
Q ss_pred CCCChHHHHHHHHhcchhhhccC-CceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEe
Q 002187 212 MGGIGKTTLAQFAYNNVDVKKKF-EKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLD 290 (955)
Q Consensus 212 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 290 (955)
+.++||||+|..++++. ....+ ...+-+++|...++. ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999842 11222 236677777755544 344444433211100 01245799999
Q ss_pred CCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHH
Q 002187 291 DVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEI 368 (955)
Q Consensus 291 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 368 (955)
+++..+......++..+......+++|++|.+ ..+...+ .-...+.+.+++.++-...+.+.+...+- .. -.+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i---~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CC---CHHH
Confidence 99877666777788777765556676666554 4444333 23678999999999998887765532221 11 1346
Q ss_pred HHHHHhhcCCChHHHHHHH
Q 002187 369 GREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 369 ~~~i~~~c~glPlai~~~~ 387 (955)
...|++.++|-+-.+..+-
T Consensus 714 L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 714 LQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 7889999999885554433
No 228
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.59 E-value=0.008 Score=62.48 Aligned_cols=90 Identities=21% Similarity=0.214 Sum_probs=53.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCcccHHHHHHHHHHHHcCCC------------CCC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKK----FEKRMWICVSELFDEFRIARAIIEALTGSA------------SNF 266 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 266 (955)
.-.++.|+|.+|+|||+||.+++-....... -..++|++....++...+ .++++..+... .+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 4568999999999999999888743222221 357899998887765444 33444433211 011
Q ss_pred CChHHHHHHHHHHhc-C-ceEEEEEeCCC
Q 002187 267 GEFQSLMQHIQECVQ-R-KKFLLVLDDVW 293 (955)
Q Consensus 267 ~~~~~~~~~l~~~l~-~-k~~LlVlDdvw 293 (955)
.+.......+.+.+. . +--+||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 122233344444443 3 45588888873
No 229
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.57 E-value=0.0099 Score=61.26 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=34.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRI 251 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 251 (955)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4569999999999999999888873 33344668899887 5555443
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.0034 Score=67.73 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=55.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
.-+.++|..|+|||.||.++++.. ...-..++++++.. ++..+...-. .. ..+... .+ +.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~------l~~~l~~~~~-~~--~~~~~~---~~-~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE------LIEILREIRF-NN--DKELEE---VY-DLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH------HHHHHHHHHh-cc--chhHHH---HH-HHhcc-C
Confidence 469999999999999999999943 33323466665433 3333322111 10 111111 12 22222 2
Q ss_pred EEEEEeCCCCccccChh--hHHhhccCC-CCCcEEEEecCC
Q 002187 285 FLLVLDDVWNEDYCKWE--PFYHCLKDG-LHESKILITTRK 322 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 322 (955)
=||||||+-.+....|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 38999999655434443 233333321 234558888875
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0046 Score=64.36 Aligned_cols=79 Identities=25% Similarity=0.282 Sum_probs=47.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF 285 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 285 (955)
=+.++|.+|+|||-||.++.+..- ..=-.+.++++ .+++.++....... .....+.+.+. +-=
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l~-~~d 169 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLRELK-KVD 169 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHhh-cCC
Confidence 588999999999999999999543 32223556643 34555555544331 11222333221 223
Q ss_pred EEEEeCCCCccccChh
Q 002187 286 LLVLDDVWNEDYCKWE 301 (955)
Q Consensus 286 LlVlDdvw~~~~~~~~ 301 (955)
||||||+-.+....|.
T Consensus 170 lLIiDDlG~~~~~~~~ 185 (254)
T COG1484 170 LLIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEEecccCccCCHHH
Confidence 8999999765445554
No 232
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.50 E-value=0.0029 Score=60.77 Aligned_cols=103 Identities=23% Similarity=0.190 Sum_probs=61.2
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcC-CCCCCEEeeCCCCCccccCc--cccCCCCCcEe
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCE-LYNLERLNVDSCSNLRELPQ--GIGKLRKLMHL 666 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~-L~~Lq~LdL~~~~~l~~lp~--~i~~L~~L~~L 666 (955)
...-.+||++|.+..++ .+..+..|..|.|.+|. |+.+...+.. +++|++|.|.+|+ +.++-. .+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 34567777777766653 46667777777777777 7666555543 4567777777776 555421 24556777777
Q ss_pred eCCCCCCCcccc----cCCCCCCCCCccceeEec
Q 002187 667 ENDQTDSLRYLP----VGIGELISLRRVSKLVVG 696 (955)
Q Consensus 667 ~l~~~~~l~~~p----~~i~~l~~L~~L~~~~~~ 696 (955)
.+-+|.. ..-+ .-+.++++|++|+...+.
T Consensus 119 tll~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCch-hcccCceeEEEEecCcceEeehhhhh
Confidence 7666632 1111 114556666666554443
No 233
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.075 Score=56.00 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=106.2
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.++=|-++.+++|.+...-+-. -+-+..+-|.++|++|.|||-||++|+++ .... |+.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH----
Confidence 3566788888888887643321 02345677999999999999999999994 3333 3433331
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc-CceEEEEEeCCCCcc--------------ccChhhHHhhccCC--CC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQ-RKKFLLVLDDVWNED--------------YCKWEPFYHCLKDG--LH 312 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~--------------~~~~~~l~~~l~~~--~~ 312 (955)
++++..-+. ...++..+.+.-+ .....|.+|.++... +...-++...+... ..
T Consensus 220 ----ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 233332222 2345555555554 457899999885310 11112233333322 23
Q ss_pred CcEEEEecCChhHHHh--hc---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh----HHH
Q 002187 313 ESKILITTRKETVACI--MG---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP----LAA 383 (955)
Q Consensus 313 gs~iivTtr~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----lai 383 (955)
.-|||..|...++... +. -+..++++.=+.+.-.++|+-++-.-. ....-+++ .+++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCchHHHHHH
Confidence 4688888876554422 12 256788875555555677776653221 12233433 4556665543 455
Q ss_pred HHHHHHhc
Q 002187 384 KTIACLLR 391 (955)
Q Consensus 384 ~~~~~~l~ 391 (955)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 66666654
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.02 Score=68.54 Aligned_cols=123 Identities=16% Similarity=0.273 Sum_probs=78.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCC--CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQ--KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
..++|.++.+..|.+.+........ .......+.|+.|+|||.||++++. -+-+..+..+-|+.|+- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-
Confidence 3578999999999999876553222 2567788899999999999999988 34333444555544442 22
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCceE-EEEEeCCCCccccChhhHHhhccCC
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRKKF-LLVLDDVWNEDYCKWEPFYHCLKDG 310 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 310 (955)
...+.+.++.... .+....|.+.++.+.| +|.||||...+.+....+...+..|
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3344333222211 2223467778888877 7779999876665555555666544
No 235
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.46 E-value=0.0094 Score=62.27 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=52.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCcccHHHHHHHHHHHHcCCCC---------CCCChH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWICVSELFDEFRIARAIIEALTGSAS---------NFGEFQ 270 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 270 (955)
-.|.=|+|.+|+|||.|+.+++-...+.. .=..++|++-...|...++. +|++....+.. ...+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 44888999999999999977764322222 12358899999999887764 56665432210 011223
Q ss_pred H---HHHHHHHHhc-CceEEEEEeCC
Q 002187 271 S---LMQHIQECVQ-RKKFLLVLDDV 292 (955)
Q Consensus 271 ~---~~~~l~~~l~-~k~~LlVlDdv 292 (955)
+ +...+...+. .+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 3 3333333343 34448888888
No 236
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.45 E-value=0.013 Score=70.35 Aligned_cols=122 Identities=16% Similarity=0.280 Sum_probs=70.4
Q ss_pred ccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.++|.++.++.|.+.+..... ........+.++|+.|+|||++|+.++.. .. ...+.+++++......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc----
Confidence 579999999999888863211 11223557899999999999999999873 22 2234555544322111
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcC-ceEEEEEeCCCCccccChhhHHhhccCC
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQR-KKFLLVLDDVWNEDYCKWEPFYHCLKDG 310 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~~~~~~l~~~l~~~ 310 (955)
+..+.+...+....+ ....+.+.++. ..-+|+||++.....+.+..+...+..+
T Consensus 530 -~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 -VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred -HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 222322221111100 01123333333 3459999999877666677777666543
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.44 E-value=0.013 Score=58.31 Aligned_cols=57 Identities=26% Similarity=0.270 Sum_probs=38.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCC
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGS 262 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 262 (955)
++|+.+||+.|+||||.+-+++.... .+-..+..|+.... ....+-++..++.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 36999999999999999988887433 33334566765432 34555667777777643
No 238
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.43 E-value=0.0014 Score=61.67 Aligned_cols=88 Identities=26% Similarity=0.187 Sum_probs=48.0
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEE
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFL 286 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 286 (955)
|.++|..|+|||+||+.+++. ... ...-+.++...+..+++...--. ... .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 679999999999999999983 321 23346677777776654432211 000 000000000001 17889
Q ss_pred EEEeCCCCccccChhhHHhhc
Q 002187 287 LVLDDVWNEDYCKWEPFYHCL 307 (955)
Q Consensus 287 lVlDdvw~~~~~~~~~l~~~l 307 (955)
+|||++.......+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999754444445555444
No 239
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.43 E-value=0.038 Score=57.50 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=97.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC-CceEEEEeCCcccHH-HHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF-EKRMWICVSELFDEF-RIARA 254 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~-~~~~~ 254 (955)
..++|-.++..++-.++....- .++..-|.|+|+.|.|||+|.-.+..+ .+.| +..+-|........+ -.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 4688998888888888754321 122335789999999999999887775 2233 233344444433222 23455
Q ss_pred HHHHHc----CCCCCCCChHHHHHHHHHHhcC------ceEEEEEeCCCCccccChhhH-Hhhcc----CCCCCcEEEEe
Q 002187 255 IIEALT----GSASNFGEFQSLMQHIQECVQR------KKFLLVLDDVWNEDYCKWEPF-YHCLK----DGLHESKILIT 319 (955)
Q Consensus 255 i~~~l~----~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdvw~~~~~~~~~l-~~~l~----~~~~gs~iivT 319 (955)
|..|+. .......+..+....+-..|+. -+.++|+|.++-.....-..+ ...|. ...+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 555543 3322333444444455555532 357888888754222111111 12221 23466778899
Q ss_pred cCChhHH-------HhhcCcceEeCCCCChhhHHHHhHhhh
Q 002187 320 TRKETVA-------CIMGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 320 tr~~~v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
||-.... ....--.++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9974322 222223366778888888888887765
No 240
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.41 E-value=0.0094 Score=61.10 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD 247 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 247 (955)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4568999999999999999888873 323334577887765554
No 241
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.40 E-value=0.0018 Score=64.69 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=62.4
Q ss_pred hcCCCcccEEEcCCCCccc-----ccccccCCCCcceEEeecCC--C-ccccch-------hhcCCCCCCEEeeCCCCCc
Q 002187 586 FDKLTCLRTLKLDGSVIIE-----IPTNIEKLLHLKYLNLSCQM--E-IERLPE-------TLCELYNLERLNVDSCSNL 650 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~--~-i~~LP~-------~i~~L~~Lq~LdL~~~~~l 650 (955)
+..+..+..++||+|.|.. +...|.+-.+|+.-+++.-. . ..++|. .+-++++||+.+|+.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4558899999999999753 55667788889988887542 0 113333 3668899999999988755
Q ss_pred cccCcc----ccCCCCCcEeeCCCC
Q 002187 651 RELPQG----IGKLRKLMHLENDQT 671 (955)
Q Consensus 651 ~~lp~~----i~~L~~L~~L~l~~~ 671 (955)
...|.. |.+-+.|.||.+++|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC
Confidence 555554 456678999988877
No 242
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00062 Score=79.50 Aligned_cols=17 Identities=29% Similarity=0.114 Sum_probs=10.6
Q ss_pred hhccCCCCCCcEEEEee
Q 002187 734 AELEKKKNLIELGLHFD 750 (955)
Q Consensus 734 ~~l~~~~~L~~L~L~~~ 750 (955)
.....+++|++|+++++
T Consensus 289 ~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGC 305 (482)
T ss_pred HHHHhcCcccEEeeecC
Confidence 33445666777777766
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.37 E-value=0.015 Score=61.09 Aligned_cols=135 Identities=24% Similarity=0.219 Sum_probs=73.4
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc-hhhhccCCceE----EEEeCCccc------
Q 002187 179 IVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN-VDVKKKFEKRM----WICVSELFD------ 247 (955)
Q Consensus 179 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~----wv~vs~~~~------ 247 (955)
+-+|..+..-..++|+++ .+..|.+.|.+|.|||.||.+..=. ...++.|..++ -|.++++..
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 445777777778888654 6789999999999999999654322 22344554332 122333211
Q ss_pred ---HHHHHHHHHHHHcCC-CCCCCChHHHHHHHH---------HHhcCce---EEEEEeCCCCccccChhhHHhhccCCC
Q 002187 248 ---EFRIARAIIEALTGS-ASNFGEFQSLMQHIQ---------ECVQRKK---FLLVLDDVWNEDYCKWEPFYHCLKDGL 311 (955)
Q Consensus 248 ---~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~---------~~l~~k~---~LlVlDdvw~~~~~~~~~l~~~l~~~~ 311 (955)
+.--.+.|..-+..- ..+....+.+...+. .+.+|+. -+||+|...+-.+. +++..+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhcc
Confidence 111122222222110 111111111211111 1334543 49999999775543 4555566778
Q ss_pred CCcEEEEecCC
Q 002187 312 HESKILITTRK 322 (955)
Q Consensus 312 ~gs~iivTtr~ 322 (955)
.||||+.|---
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 89999998753
No 244
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.0089 Score=67.48 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=108.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
+++||-+.....|...+.... -..--...|.-|+||||+|+-++....-.. | .....++.-..-+.|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 467999999999999886432 223445689999999999998887322111 1 1122222222222222
Q ss_pred HH-----HcCCCCCCCChHHHHHHHHHHh----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHH
Q 002187 257 EA-----LTGSASNFGEFQSLMQHIQECV----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVA 326 (955)
Q Consensus 257 ~~-----l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~ 326 (955)
.. +..+......++++...+.+.. ++|-=+.|+|.|.-.+...|..+...+-.-...-+.|+.|.+ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 21 0000001112233322222221 234448899999776777788888777665555555555544 4554
Q ss_pred Hh-hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH
Q 002187 327 CI-MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL 381 (955)
Q Consensus 327 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 381 (955)
.. ....+.|.++.++.++-...+...+-..+-. -..+...-|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 43 3447899999999998888887766433221 123345556666666544
No 245
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.36 E-value=0.019 Score=59.68 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=53.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCccc-HHHHHHHHHHHHcC-------CCCCCCChH-----H
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFD-EFRIARAIIEALTG-------SASNFGEFQ-----S 271 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~-----~ 271 (955)
-++|+|..|+|||||++.+++ .++.+|+ .++++-+.+... +.++...+...=.. ...+..... .
T Consensus 71 r~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred EEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 689999999999999999999 5555564 455666766543 44555544432111 011111111 2
Q ss_pred HHHHHHHHh--c-CceEEEEEeCC
Q 002187 272 LMQHIQECV--Q-RKKFLLVLDDV 292 (955)
Q Consensus 272 ~~~~l~~~l--~-~k~~LlVlDdv 292 (955)
..-.+.+++ + ++..|+++||+
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCh
Confidence 233455565 3 89999999999
No 246
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00036 Score=69.76 Aligned_cols=100 Identities=24% Similarity=0.240 Sum_probs=67.7
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccch--hhcCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPE--TLCELYN 638 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~--~i~~L~~ 638 (955)
++.+.+.|++++|....+. +..+|+.|+||.|+-|+|..+ +.+..|++|+.|.|+.|. |..+.+ -+.+|++
T Consensus 17 dl~~vkKLNcwg~~L~DIs-----ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-----ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccHHH-----HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCch
Confidence 4566777888887744332 257888888888888888777 457788888888888887 766653 3667777
Q ss_pred CCEEeeCCCCCccccCcc-----ccCCCCCcEee
Q 002187 639 LERLNVDSCSNLRELPQG-----IGKLRKLMHLE 667 (955)
Q Consensus 639 Lq~LdL~~~~~l~~lp~~-----i~~L~~L~~L~ 667 (955)
|++|.|..|.-...-+.. +..|++|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888777665533332221 34566676664
No 247
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.35 E-value=0.013 Score=60.43 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccC------CceEEEEeCCcccHHHHHHHHHHHHcCCC---------CCCC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF------EKRMWICVSELFDEFRIARAIIEALTGSA---------SNFG 267 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~ 267 (955)
.-.++.|+|.+|+|||+||.+++.. ....- ..++|++....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4569999999999999999888763 22222 457899988777765543 3334332110 1113
Q ss_pred ChHHHHHHHHHHhc---C-ceEEEEEeCCC
Q 002187 268 EFQSLMQHIQECVQ---R-KKFLLVLDDVW 293 (955)
Q Consensus 268 ~~~~~~~~l~~~l~---~-k~~LlVlDdvw 293 (955)
+.+++...+.+... . +--+||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 44555555555443 3 44489999984
No 248
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.34 E-value=0.026 Score=53.59 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=63.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEE---EeCCcccHHHHHHHHHHHHc----CCC--CCCCC-------
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWI---CVSELFDEFRIARAIIEALT----GSA--SNFGE------- 268 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~~~~~i~~~l~----~~~--~~~~~------- 268 (955)
..|-|++-.|.||||+|...+- +..++=-.+.+| .-........+++.+ ..+. +.. ....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 3688888889999999977665 333332233343 332233333333333 0110 000 00011
Q ss_pred hHHHHHHHHHHhcCceE-EEEEeCCCC---ccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 269 FQSLMQHIQECVQRKKF-LLVLDDVWN---EDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 269 ~~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
.....+..++.+....| |||||++-. ...-..+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11233344455555555 999999832 22345566777777777778899999984
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.04 Score=59.64 Aligned_cols=71 Identities=6% Similarity=0.029 Sum_probs=46.6
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhhc-CcceEeCCCCChhhHHHHhHhh
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIMG-STNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
+++-++|+|++..-+...-..+...+.....+..+|++|.+ ..+...+. ....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34445667888766555566666666554455666667766 44444432 2568999999999998888653
No 250
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.32 E-value=0.012 Score=62.92 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCC-----CCCCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGS-----ASNFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~ 277 (955)
.-+++-|+|.+|+||||||.+++-. ....-..++||+..+.++.. .+++++.. .....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4568899999999999999887763 33344568899988777653 33444322 111224455555565
Q ss_pred HHhcC-ceEEEEEeCCC
Q 002187 278 ECVQR-KKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~~-k~~LlVlDdvw 293 (955)
..++. .--+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 55543 45599999973
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.31 E-value=0.0097 Score=57.65 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 179 IVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 179 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
++|....+.++.+.+..-.. ...-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 47888888888887754432 2235679999999999999999983
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.27 E-value=0.012 Score=62.79 Aligned_cols=84 Identities=23% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC-----CCCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA-----SNFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 277 (955)
.-+++-|+|.+|+||||||.+++.. ....-..++||+..+.++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5568999999999999999887763 33334557899887766653 344444321 11234455555565
Q ss_pred HHhc-CceEEEEEeCCC
Q 002187 278 ECVQ-RKKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~-~k~~LlVlDdvw 293 (955)
..++ +.--+||+|.+-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5554 445699999984
No 253
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.26 E-value=0.003 Score=57.83 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.018 Score=63.18 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...++.++|.+|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988863
No 255
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.24 E-value=0.018 Score=66.91 Aligned_cols=44 Identities=32% Similarity=0.479 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|.+..++.+...+... ...-|.|+|..|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999998877533 233568999999999999999986
No 256
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.22 E-value=0.0011 Score=66.10 Aligned_cols=259 Identities=20% Similarity=0.119 Sum_probs=151.2
Q ss_pred ccccCCCCcceEEeecCCCcc-----ccchhhcCCCCCCEEeeCCCC---CccccC-------ccccCCCCCcEeeCCCC
Q 002187 607 TNIEKLLHLKYLNLSCQMEIE-----RLPETLCELYNLERLNVDSCS---NLRELP-------QGIGKLRKLMHLENDQT 671 (955)
Q Consensus 607 ~~i~~L~~Lr~L~L~~~~~i~-----~LP~~i~~L~~Lq~LdL~~~~---~l~~lp-------~~i~~L~~L~~L~l~~~ 671 (955)
..+..+..+..++||||. |. .+...|.+-++|+..+++.-. ...++| +.+-+|++|+..++++|
T Consensus 24 eel~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 344557889999999998 65 355667788899999887642 011233 34578899999999998
Q ss_pred CCCccccc----CCCCCCCCCccceeEecCccCCccCcc-ccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEE
Q 002187 672 DSLRYLPV----GIGELISLRRVSKLVVGGGYDKACSLG-SLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELG 746 (955)
Q Consensus 672 ~~l~~~p~----~i~~l~~L~~L~~~~~~~~~~~~~~l~-~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 746 (955)
-.....|. .|++-+.|.+|.+.+++.....+..++ .|..|... ....+.+.|++..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n-------------------KKaa~kp~Le~vi 163 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-------------------KKAADKPKLEVVI 163 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH-------------------hhhccCCCceEEE
Confidence 54444444 367778899998888776543222222 11111111 1123456677776
Q ss_pred EEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChh--------cccccccEEEEeCCC
Q 002187 747 LHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWV--------MSLTNLRVLHLRWCS 818 (955)
Q Consensus 747 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~--------~~l~~L~~L~L~~~~ 818 (955)
...|.+...+ ....-..++.+.+|+.+.+..|.+. |..+ ..+.+|+.|+|.+|.
T Consensus 164 cgrNRlengs-------------~~~~a~~l~sh~~lk~vki~qNgIr-----pegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 164 CGRNRLENGS-------------KELSAALLESHENLKEVKIQQNGIR-----PEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred eccchhccCc-------------HHHHHHHHHhhcCceeEEeeecCcC-----cchhHHHHHHHHHHhCcceeeeccccc
Confidence 6666543332 1223335566678888888877653 3322 267888888888883
Q ss_pred CCCcCC------CCCCCCCcceeeecCCCCceEeCcc-ccCCccCCCCccccCCCccceeeecccccccccccccccc-c
Q 002187 819 NCEHLP------PLGKLPSLEDLEILGMGSVKRVGNE-FLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVK-G 890 (955)
Q Consensus 819 ~~~~l~------~l~~l~~L~~L~L~~~~~l~~i~~~-~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~-~ 890 (955)
. +... .+..-+.|+.|.+.+|- +..-+.. ++.. .+...+|+|..|.+.++..--........+ .
T Consensus 226 f-t~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~ 297 (388)
T COG5238 226 F-TLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRR------FNEKFVPNLMPLPGDYNERRGGIILDISLNEF 297 (388)
T ss_pred h-hhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHH------hhhhcCCCccccccchhhhcCceeeeechhhh
Confidence 2 2111 13445668888888775 2222211 1100 012367888888777653111111110111 1
Q ss_pred ccccCcccceeeeccCcCCCCC
Q 002187 891 EIRIMPRLSSLSIVYCPKLKAL 912 (955)
Q Consensus 891 ~~~~~~~L~~L~i~~c~~l~~l 912 (955)
...++|-|..|.+.+|. ++..
T Consensus 298 e~~~~p~L~~le~ngNr-~~E~ 318 (388)
T COG5238 298 EQDAVPLLVDLERNGNR-IKEL 318 (388)
T ss_pred hhcccHHHHHHHHccCc-chhH
Confidence 23579999999999986 5543
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.22 E-value=0.019 Score=55.54 Aligned_cols=40 Identities=33% Similarity=0.364 Sum_probs=29.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD 247 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 247 (955)
++.|+|.+|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999884 333335577887766543
No 258
>PRK09354 recA recombinase A; Provisional
Probab=96.18 E-value=0.016 Score=62.38 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=56.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC-----CCCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA-----SNFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 277 (955)
.-+++-|+|.+|+||||||.+++.. ....-...+||+....++.. .+++++.+. ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5568999999999999999887763 33344568899988877753 344444321 11223555555666
Q ss_pred HHhc-CceEEEEEeCCC
Q 002187 278 ECVQ-RKKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~-~k~~LlVlDdvw 293 (955)
..++ ++--+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5554 345599999984
No 259
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.17 E-value=0.0008 Score=78.59 Aligned_cols=165 Identities=21% Similarity=0.252 Sum_probs=85.8
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCC
Q 002187 739 KKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCS 818 (955)
Q Consensus 739 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 818 (955)
+++|+.|.+..|.- ..+..+......+++|++|+|++|....+........++++|+.|.+..+.
T Consensus 268 c~~L~~L~l~~c~~---------------lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN---------------LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred CCCcceEccCCCCc---------------cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 56777777655520 122344555666788999999988776422113334467777776665553
Q ss_pred CCCcCC-----CCCCCC--CcceeeecCCCCceEeCccccCCccCCCCccccCCCccc-eeeeccccccc-ccccccccc
Q 002187 819 NCEHLP-----PLGKLP--SLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLK-ELRFWSMKELE-EWDFVTAVK 889 (955)
Q Consensus 819 ~~~~l~-----~l~~l~--~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~-~L~l~~~~~L~-~~~~~~~~~ 889 (955)
.+..+. .+.... .+..+.+.+|+.++...-...+ . .... .+.+.+|+.++ .+..
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~-----------~~~~~~~~l~gc~~l~~~l~~----- 395 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I-----------SDLGLELSLRGCPNLTESLEL----- 395 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c-----------cCcchHHHhcCCcccchHHHH-----
Confidence 311111 111111 3444555555544433322221 0 0111 34444555552 1111
Q ss_pred cccccCcccceeeeccCcCCCCCCC-CCC-CCCCcCeEEEecCCCcccc
Q 002187 890 GEIRIMPRLSSLSIVYCPKLKALPD-HLL-QKTTLQRLSIFSCPILKKT 936 (955)
Q Consensus 890 ~~~~~~~~L~~L~i~~c~~l~~lp~-~~~-~l~~L~~L~l~~c~~l~~~ 936 (955)
....+.+|+.|.+..|...+.--- ... .+.++..+.+.+|+.+...
T Consensus 396 -~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 396 -RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred -HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 223344489999999986542110 011 1677888999999887766
No 260
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.11 E-value=0.056 Score=61.71 Aligned_cols=159 Identities=17% Similarity=0.117 Sum_probs=82.5
Q ss_pred CccccchhHHHHHHHHHhc---C-CCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLC---E-SSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIA 252 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~---~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 252 (955)
+++.|.+..++.+.+.... . ...+-...+-|.++|++|.|||.+|+.+++. ..-.| +-+.++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 4677877666655543211 0 0001234567889999999999999999984 22222 1122111
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc--c-----C-h----hhHHhhccCCCCCcEEEEec
Q 002187 253 RAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY--C-----K-W----EPFYHCLKDGLHESKILITT 320 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--~-----~-~----~~l~~~l~~~~~gs~iivTt 320 (955)
+.. ...+ .....+.+.+...-...+++|++|+++.-.. . . - ..+...+.....+--||.||
T Consensus 295 --l~~----~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFG----GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcc----cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 110 0001 0112222223222235789999999953110 0 0 0 11222222223334466677
Q ss_pred CChh-HHHhh----cCcceEeCCCCChhhHHHHhHhhhcC
Q 002187 321 RKET-VACIM----GSTNIISINVLSEMGCWLVFEPLAFS 355 (955)
Q Consensus 321 r~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~ 355 (955)
.... +-..+ .-+..+.++.-+.++-.++|+.+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 6543 22222 22567888888999999999887643
No 261
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.11 E-value=0.0038 Score=58.65 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=60.4
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEEEEeCCcccHHHHHHHHHHH
Q 002187 180 VGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVK-KKFEKRMWICVSELFDEFRIARAIIEA 258 (955)
Q Consensus 180 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~ 258 (955)
||+-..++++.+.+..-.. ....|.|+|..|+||+++|+.++...... ..|.. +.+....
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------------
Confidence 4666677777766654321 23368999999999999999988743211 11211 0111100
Q ss_pred HcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCC-CCCcEEEEecCCh
Q 002187 259 LTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDG-LHESKILITTRKE 323 (955)
Q Consensus 259 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 323 (955)
.+.+.+ .+.--|+|+|+..-+.+....+...+... ....|+|.||...
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 14445779999765555555666666532 5678999999853
No 262
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.09 E-value=0.04 Score=67.39 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=92.3
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
+++.|.+..++.|.+.+...-. -+-...+-+.++|.+|+|||+||+.+++. ....| +.+..+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH-----
Confidence 4588999999988887642210 01123456889999999999999999983 32222 2222111
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc-----------cChhhHHhhccCC-CCCcEEE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY-----------CKWEPFYHCLKDG-LHESKIL 317 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~-~~gs~ii 317 (955)
+ .... .+ ...+.+...+.........+|+||++..... .....+...+..- ..+..++
T Consensus 248 -i----~~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -I----MSKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -H----hccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 1000 00 1112233333333445678999999853110 0112233333221 2233344
Q ss_pred E-ecCCh-hHHHhhc----CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH
Q 002187 318 I-TTRKE-TVACIMG----STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL 381 (955)
Q Consensus 318 v-Ttr~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 381 (955)
+ ||... .+...+. -...+.+...+.++-.+++....-.. ...... ....+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcccc----CHHHHHHhCCCCCH
Confidence 4 45432 2222211 13467788888888888887544211 111111 24567777777643
No 263
>PRK06696 uridine kinase; Validated
Probab=96.08 E-value=0.0075 Score=61.91 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 181 GREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 181 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|.+.+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36677888888887533 246789999999999999999999983
No 264
>PRK13695 putative NTPase; Provisional
Probab=96.07 E-value=0.0063 Score=59.80 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 265
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.04 E-value=0.018 Score=57.58 Aligned_cols=103 Identities=18% Similarity=0.137 Sum_probs=52.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh----
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECV---- 280 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 280 (955)
+++.|.|.+|.||||+++.+...... . ...+.+.......... +.+..+.. ...+.. .+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSHHHHHH----HHHHHTS----EEEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHH---HHhcCCcccc
Confidence 47889999999999999998874332 2 2344444443322332 22222211 000000 000000
Q ss_pred -----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC
Q 002187 281 -----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 281 -----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
..++-+||+|++...+...+..+....+. .|+|+|+.--.
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12335999999976665566666666554 47788876643
No 266
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.97 E-value=0.018 Score=61.94 Aligned_cols=58 Identities=24% Similarity=0.171 Sum_probs=41.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCcccHHHHHHHHHHHHcC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVK----KKFEKRMWICVSELFDEFRIARAIIEALTG 261 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 261 (955)
.-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....|+.+++. ++++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 45688999999999999997765322221 112368899999988888765 45666654
No 267
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.0037 Score=62.73 Aligned_cols=60 Identities=25% Similarity=0.197 Sum_probs=28.8
Q ss_pred cCCCCcceEEeecC--CCccccchhhcCCCCCCEEeeCCCCCccccCcc---ccCCCCCcEeeCCCC
Q 002187 610 EKLLHLKYLNLSCQ--MEIERLPETLCELYNLERLNVDSCSNLRELPQG---IGKLRKLMHLENDQT 671 (955)
Q Consensus 610 ~~L~~Lr~L~L~~~--~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~---i~~L~~L~~L~l~~~ 671 (955)
-.|++|++|.++.| .....++....++++|++|++++|+ +.. ++. +..+.+|..|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcchhhhhcccC
Confidence 34555555555555 3223344444445555666655555 332 122 233444555555555
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.95 E-value=0.03 Score=59.54 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=46.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
..+++.|+|.+|+||||++..++.....+..-..+..|+..... .....+....+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999999888743322111234556544321 122233333333333222223334444444433 3
Q ss_pred CceEEEEEeCC
Q 002187 282 RKKFLLVLDDV 292 (955)
Q Consensus 282 ~k~~LlVlDdv 292 (955)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 269
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.91 E-value=0.017 Score=54.54 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 270
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.019 Score=65.63 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECV 280 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (955)
.+.-+|..++|++|+||||||+-++++.. | .++=|++|..-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 45678999999999999999999998432 2 36778888877776666666555433221100
Q ss_pred cCceEEEEEeCCCCccccChhhHHhhc
Q 002187 281 QRKKFLLVLDDVWNEDYCKWEPFYHCL 307 (955)
Q Consensus 281 ~~k~~LlVlDdvw~~~~~~~~~l~~~l 307 (955)
.++..-+|+|.++-......+.+...+
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHH
Confidence 156677899998654322334444443
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.89 E-value=0.0061 Score=68.83 Aligned_cols=49 Identities=24% Similarity=0.294 Sum_probs=40.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433221233557999999999999999999998
No 272
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.87 E-value=0.16 Score=62.08 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=93.2
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.++.|.+..++.+.+.+.-+-. .+....+-+.++|++|.|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4578888887777766542110 01123445889999999999999999984 33222 222211
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc------cc-C-----hhhHHhhccC--CCCCcE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED------YC-K-----WEPFYHCLKD--GLHESK 315 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------~~-~-----~~~l~~~l~~--~~~gs~ 315 (955)
+++.... + .....+.......-+....+|++|+++.-. .. . ...+...+.. ...+--
T Consensus 522 ----~l~~~~v----G-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV----G-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc----C-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 1 111122222333334567899999985310 00 1 1122222321 123445
Q ss_pred EEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 316 ILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 316 iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
||.||...... ..+ .-...+.++..+.++-.++|+.+..+. ......+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 66677554332 222 125678889999999999987654321 1112223 344666776654
No 273
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.08 Score=54.76 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=49.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhh--ccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVK--KKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
.++|.++|++|.|||+|++++++...++ +.|....-+.++.. .++.....+ ...-...+.+.|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999976443 34444444443321 222222211 12334566777788887
Q ss_pred CceE--EEEEeCCC
Q 002187 282 RKKF--LLVLDDVW 293 (955)
Q Consensus 282 ~k~~--LlVlDdvw 293 (955)
++.. ++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 6554 55678884
No 274
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.79 E-value=0.0069 Score=58.87 Aligned_cols=43 Identities=26% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEEEEeCCccc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVK-KKFEKRMWICVSELFD 247 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~ 247 (955)
...++.+.|+.|+|||.+|+.+.+ .+. +.....+-++++.-..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 356889999999999999999998 333 3444556666655433
No 275
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.78 E-value=0.029 Score=60.77 Aligned_cols=58 Identities=26% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCcccHHHHHHHHHHHHcC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVK----KKFEKRMWICVSELFDEFRIARAIIEALTG 261 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 261 (955)
.-.++-|+|.+|+|||+|+..++-..... +.-..++||+....|..+++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45688899999999999998775422221 1124678999999999887644 5666654
No 276
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.78 E-value=0.075 Score=52.49 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=63.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE---eCCcccHHHHH------HHHHHHHcCCC------CCCCCh
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC---VSELFDEFRIA------RAIIEALTGSA------SNFGEF 269 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~------~~i~~~l~~~~------~~~~~~ 269 (955)
.+++|+|..|.|||||.+.++... ......+++. +.. .+..... .++++.++... ...+.-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 389999999999999999999832 2344555443 211 1221211 12344443221 111222
Q ss_pred HHHHHHHHHHhcCceEEEEEeCCCC-ccccChhhHHhhccCC-CC-CcEEEEecCChhHH
Q 002187 270 QSLMQHIQECVQRKKFLLVLDDVWN-EDYCKWEPFYHCLKDG-LH-ESKILITTRKETVA 326 (955)
Q Consensus 270 ~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 326 (955)
+...-.+...+-..+-++++|+--. -+....+.+...+..- .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2333345556666778899998642 1222333444444322 12 56788888776544
No 277
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.76 E-value=0.05 Score=58.70 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=39.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
.-.++.|+|.+|+|||||+..++....... .-..++|++....+...+ +.++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 567999999999999999988775322211 113568999888877776 344555544
No 278
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.00068 Score=67.88 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=79.0
Q ss_pred CCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCc--cccCCCCCcE
Q 002187 588 KLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQ--GIGKLRKLMH 665 (955)
Q Consensus 588 ~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~--~i~~L~~L~~ 665 (955)
.+.+.+.|++.+|.+..+ +-+..++.|+.|.||-|+ |+.|-. +..+.+|+.|.|+.|. +..+-. -+.+|++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhh
Confidence 356778899999998876 446689999999999998 988865 8899999999999988 776643 3678999999
Q ss_pred eeCCCCCCCcccccC-----CCCCCCCCccceeE
Q 002187 666 LENDQTDSLRYLPVG-----IGELISLRRVSKLV 694 (955)
Q Consensus 666 L~l~~~~~l~~~p~~-----i~~l~~L~~L~~~~ 694 (955)
|-|..|......+.. +.-|++|+.|+-..
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 999887654444332 45567777776443
No 279
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.05 Score=53.25 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=59.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--ccHHHHHHHHHHHHcC--CCCC----------CCChH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL--FDEFRIARAIIEALTG--SASN----------FGEFQ 270 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~--~~~~----------~~~~~ 270 (955)
.+++|+|..|.|||||.+.++.-. ......+++.-... ..... ....+.. .... .+..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 389999999999999999998842 22344444321110 00111 0111110 0000 11111
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccCCCCCcEEEEecCChhHHHh
Q 002187 271 SLMQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKDGLHESKILITTRKETVACI 328 (955)
Q Consensus 271 ~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 328 (955)
...-.+...+-.+.=++++|+-... +......+...+..-..+..||++|.+......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 2222355555567779999986431 222233344444332235668888887665543
No 280
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.73 E-value=0.041 Score=59.70 Aligned_cols=58 Identities=22% Similarity=0.164 Sum_probs=41.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCcccHHHHHHHHHHHHcC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWICVSELFDEFRIARAIIEALTG 261 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 261 (955)
.-.++-|+|.+|+|||+||..++-...... .-..++||+....|..+++ .+|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 456888999999999999987774322111 1125889999999988775 455666653
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=95.71 E-value=0.087 Score=58.99 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
....+|.++|.+|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998877766
No 282
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.11 Score=59.42 Aligned_cols=160 Identities=17% Similarity=0.086 Sum_probs=84.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc--cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF--DEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
..-|.|.|..|+|||+||+++++... +.+.-.+..|+++.-. ..+.+++. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 44688999999999999999999654 4444456677776532 12222222 1223334455
Q ss_pred CceEEEEEeCCCC------ccccChhhHH----hhc----c-CCCCCcE--EEEecCChh-HHHhhcC----cceEeCCC
Q 002187 282 RKKFLLVLDDVWN------EDYCKWEPFY----HCL----K-DGLHESK--ILITTRKET-VACIMGS----TNIISINV 339 (955)
Q Consensus 282 ~k~~LlVlDdvw~------~~~~~~~~l~----~~l----~-~~~~gs~--iivTtr~~~-v~~~~~~----~~~~~l~~ 339 (955)
-.+-+|||||++- ....+|.... .++ . ....+.+ +|.|..... +-..... .....|+.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 6788999999842 1112333211 111 0 1233444 444544322 1111111 34677888
Q ss_pred CChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC-hHHHHH
Q 002187 340 LSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL-PLAAKT 385 (955)
Q Consensus 340 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~ 385 (955)
+...+-.++++........ ....+...-+..+|+|. |.-++.
T Consensus 573 p~~~~R~~IL~~~~s~~~~----~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLS----DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred cchhHHHHHHHHHHHhhhh----hhhhHHHHHHHHhcCCccchhHHH
Confidence 8888887777665422111 11122233377888764 444433
No 283
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.66 E-value=0.07 Score=50.41 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=56.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
.+++|+|..|.|||||++.+.... ......+|+.-.. .+..- ...+..+...-.+...+-.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 389999999999999999998843 2233444442100 00000 001111222233455555666
Q ss_pred EEEEEeCCCC-ccccChhhHHhhccCCCCCcEEEEecCChhHHH
Q 002187 285 FLLVLDDVWN-EDYCKWEPFYHCLKDGLHESKILITTRKETVAC 327 (955)
Q Consensus 285 ~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 327 (955)
-++++|+--. -+......+...+..- +..||++|.......
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7889998642 2223344454444432 245788887755443
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.65 E-value=0.09 Score=59.18 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=46.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
-+++.++|++|+||||++..++........-..+..|+....- .....++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 4599999999999999998877632211222345666654321 112223333333433222223334455555432 2
Q ss_pred ceEEEEEeCC
Q 002187 283 KKFLLVLDDV 292 (955)
Q Consensus 283 k~~LlVlDdv 292 (955)
..=+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 2457888965
No 285
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.65 E-value=0.067 Score=62.88 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
....++|....++++.+.+..-.. ....|.|+|..|+|||++|+.+++... ..-...+.|+++...+ ..+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~- 264 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLE- 264 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHH-
Confidence 346899999999998887754332 233578999999999999999997421 1112334555554322 2211
Q ss_pred HHHHHcCCCCCC-CChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecCC
Q 002187 255 IIEALTGSASNF-GEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTRK 322 (955)
Q Consensus 255 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 322 (955)
..+.+...+. ..... ...-..-....-.|+||++..-.......+...+..+. ...|||.||..
T Consensus 265 --~~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 265 --SELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --HHHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1222211100 00000 00000011223458899997655555666766665432 12478888754
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.64 E-value=0.037 Score=54.60 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=58.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC--C-------------CCCCCChH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG--S-------------ASNFGEFQ 270 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~-------------~~~~~~~~ 270 (955)
+++|+|..|.|||||++.+..-.. .-...+++.-. +.......+-..+.. + .......+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 899999999999999999987421 22333333211 111110111111110 0 00111112
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccCCCCCcEEEEecCChhHHH
Q 002187 271 SLMQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKDGLHESKILITTRKETVAC 327 (955)
Q Consensus 271 ~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 327 (955)
...-.+...+-.++=++++|+.... +....+.+...+..-..+..||++|.+.....
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2233355555667778899987431 22223334444433223667888888766554
No 287
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.019 Score=56.92 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHH--HcCCCCCCCChHHHHHHHHHH
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEA--LTGSASNFGEFQSLMQHIQEC 279 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 279 (955)
....+|+|.|.+|.||||+|+.++. .++..+ ++-++-..-+.. .-.....+. .....+..-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~-~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKD-QSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccc-hhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999998 444331 111221111110 000001111 112234455778888888888
Q ss_pred hcCce
Q 002187 280 VQRKK 284 (955)
Q Consensus 280 l~~k~ 284 (955)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 288
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.62 E-value=0.04 Score=55.16 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhc-cCC---ceEEEEeCCcccHHHHHHHHHHHH----cCCCCCCCChHHHHHHHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKK-KFE---KRMWICVSELFDEFRIARAIIEAL----TGSASNFGEFQSLMQHIQ 277 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 277 (955)
||+|.|.+|+||||+|+.+... ... ... ....++........... ..-... ....+..-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLR-DRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHH-HHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchh-hHhhccccccCCCCccccCHHHHHHHHH
Confidence 7999999999999999999883 332 222 12333322222222211 111111 112234456777888888
Q ss_pred HHhcCceEEE
Q 002187 278 ECVQRKKFLL 287 (955)
Q Consensus 278 ~~l~~k~~Ll 287 (955)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7777766543
No 289
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.12 Score=61.32 Aligned_cols=154 Identities=20% Similarity=0.256 Sum_probs=85.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC-----CceEEEEeCCcccHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF-----EKRMWICVSELFDEFRI 251 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~ 251 (955)
+.++||++|++++++.|..... +.. ..+|.+|+|||++|.-++... +.+.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----------
Confidence 3589999999999999976532 222 368999999999987766621 11111 111111
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCc---------cccChhhHHhhccCCCCCcEEEEecC
Q 002187 252 ARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNE---------DYCKWEPFYHCLKDGLHESKILITTR 321 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr 321 (955)
-++.. +.....-..+.++..+.+-+.+ +.++..|.+|.+.+- ..+.-.-++.+|..| .--.|-.||-
T Consensus 232 -LD~g~-LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 232 -LDLGS-LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred -ecHHH-HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 01111 1111222234444444444444 345899999998531 011222233344433 2334566665
Q ss_pred ChhHHHhh-------cCcceEeCCCCChhhHHHHhHhh
Q 002187 322 KETVACIM-------GSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 322 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
++. -..+ .-.+.+.+..-+.+++..+++-.
T Consensus 309 ~EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 432 1111 23568889999999998888643
No 290
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.59 E-value=0.029 Score=61.06 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=71.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
..++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.++... ...-...+.|+++... ...+...++
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 3589999888888887764432 23358899999999999999998621 1111223455555432 122222221
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecCC
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTRK 322 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 322 (955)
..-.....+... .....+. ....=.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 79 g~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred cccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 100000000000 0001111 1222357899997655555666666664432 13578888765
No 291
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.054 Score=61.19 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=45.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
.-.+++|+|.+|+||||++.++......+.....+..++.... ......++.....++.......+...+...+++ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 4579999999999999999888773222211233445543221 111222222222232221122233344444443 33
Q ss_pred CceEEEEEeCCC
Q 002187 282 RKKFLLVLDDVW 293 (955)
Q Consensus 282 ~k~~LlVlDdvw 293 (955)
+ .=+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4478888774
No 292
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.58 E-value=0.11 Score=52.52 Aligned_cols=209 Identities=12% Similarity=0.109 Sum_probs=115.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcch----hhhccCCceEEEEeCCc--------
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNV----DVKKKFEKRMWICVSEL-------- 245 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~vs~~-------- 245 (955)
.+.++++....+..... .++..-..++|+.|.||-|.+..+.++. -.+-.-+.+-|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 46667666666665543 2357788999999999999886665531 11112344555544332
Q ss_pred --c-----------cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC-ceE-EEEEeCCCCccccChhhHHhhccCC
Q 002187 246 --F-----------DEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR-KKF-LLVLDDVWNEDYCKWEPFYHCLKDG 310 (955)
Q Consensus 246 --~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 310 (955)
+ ..+-+.++++.++.....- ..++ +.| ++|+-.++.-..+.-..++.....-
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 1122333333333221100 0122 344 6667666544444444555555555
Q ss_pred CCCcEEEEecCC-hhHHHhhcC-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHH
Q 002187 311 LHESKILITTRK-ETVACIMGS-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIAC 388 (955)
Q Consensus 311 ~~gs~iivTtr~-~~v~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~ 388 (955)
.+.+|+|+...+ ..+...+.+ .-.+.+..-+++|-...+.+.+-..+-. -| ++++.+|+++++|.---...+--
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LP--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc--Cc--HHHHHHHHHHhcccHHHHHHHHH
Confidence 567888776543 222222222 4468899999999999988876433321 12 67899999999886543333333
Q ss_pred HhcCC--C--------CHHHHHHHHhhhchh
Q 002187 389 LLRSK--N--------TEKEWQNILESEIWE 409 (955)
Q Consensus 389 ~l~~~--~--------~~~~w~~~~~~~~~~ 409 (955)
.++-+ . ..-+|+-...+....
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 32221 1 134788777654433
No 293
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.57 E-value=0.084 Score=50.78 Aligned_cols=117 Identities=20% Similarity=0.122 Sum_probs=64.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceE--EEEeCCcccHHHHHHHHHHHHc-----CC----CCCCC----C
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRM--WICVSELFDEFRIARAIIEALT-----GS----ASNFG----E 268 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~i~~~l~-----~~----~~~~~----~ 268 (955)
...|-|++-.|.||||.|..+.-.. ...-+...+ |+..........++... .+. .. ..+.. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 3578888889999999997666521 122222211 44433233333444332 111 00 00100 1
Q ss_pred hHHHHHHHHHHhcCceE-EEEEeCCCC---ccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 269 FQSLMQHIQECVQRKKF-LLVLDDVWN---EDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 269 ~~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
........++.+...+| |||||.+-. ...-+.+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12234445555555555 999999831 12234556777777666778999999985
No 294
>PRK08233 hypothetical protein; Provisional
Probab=95.57 E-value=0.037 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 295
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.56 E-value=0.097 Score=50.86 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=59.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEE-------EeCCcccH--HHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWI-------CVSELFDE--FRIARAIIEALTGSASNFGEFQSLMQHI 276 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 276 (955)
+++|+|..|.|||||++.+..... .....+++ .+.+.+.. ..+...+.-. .....+.-+...-.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 899999999999999999988432 11222222 12333211 1222222110 112222223333345
Q ss_pred HHHhcCceEEEEEeCCCC-ccccChhhHHhhccCCCCCcEEEEecCChhHHH
Q 002187 277 QECVQRKKFLLVLDDVWN-EDYCKWEPFYHCLKDGLHESKILITTRKETVAC 327 (955)
Q Consensus 277 ~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 327 (955)
...+-.++=++++|+--. -+......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 555666677889998632 1222233344444332 355777887765543
No 296
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.55 E-value=0.082 Score=57.47 Aligned_cols=57 Identities=28% Similarity=0.314 Sum_probs=40.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKK----FEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
.-.++-|+|.+|+|||++|.+++-....... =..++||+....|+..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 4568899999999999999887753222111 13688999999888776544 444443
No 297
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.53 E-value=0.044 Score=66.53 Aligned_cols=135 Identities=13% Similarity=0.184 Sum_probs=73.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
..++|+...++.+.+.+..-.. .-.-|.|+|..|+|||++|+.+++... ..-...+.+++..... ..+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~~-~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMPA-GLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCCh-hHhhhhhc
Confidence 4699999888888776653322 233688999999999999999987421 1112344555554321 11111111
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecCCh
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTRKE 323 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 323 (955)
........+.. ......+ -....=.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11100000100 0111111 11223468999997655555556666664331 245888888653
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.50 E-value=0.049 Score=53.42 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998873
No 299
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.48 E-value=0.4 Score=51.28 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
.++=..+....+..++... +.|.|.|..|+||||+|+.++. +.... .+.|.++...+.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~ 103 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSR 103 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCCh
Confidence 3444444556677777432 2599999999999999999998 33322 235555554444
No 300
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.014 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchh
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVD 229 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~ 229 (955)
--|.|.|++|+||||+++.+.+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4689999999999999999998443
No 301
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.45 E-value=0.14 Score=51.36 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=86.9
Q ss_pred CCCccccchhHHH---HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHH
Q 002187 175 DESEIVGREKEKK---ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRI 251 (955)
Q Consensus 175 ~~~~~vGr~~~~~---~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 251 (955)
.-+++||.++... -|++.|..+..-++=..+-|..+|++|.|||.+|+++++... -.| +.|..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vka------- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVKA------- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEech-------
Confidence 3457899887654 367777665433334577899999999999999999999433 222 11111
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc--------ccChhhHHhhc----c--CCCCCcEE
Q 002187 252 ARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED--------YCKWEPFYHCL----K--DGLHESKI 316 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~--------~~~~~~l~~~l----~--~~~~gs~i 316 (955)
..-|-+..+ +....+..+.+.- +.-.+++.+|.++-.. ..+...+..+| . ..+.|-..
T Consensus 185 t~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 185 TELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HHHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 111111111 1122222233222 3468899999874211 01122222222 1 12356666
Q ss_pred EEecCChhHHHh-hcC--cceEeCCCCChhhHHHHhHhhh
Q 002187 317 LITTRKETVACI-MGS--TNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 317 ivTtr~~~v~~~-~~~--~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
|-.|...++... +.+ ..-++...-+++|-.+++...+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 666666554432 222 3456666677888888887776
No 302
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.0067 Score=36.23 Aligned_cols=19 Identities=32% Similarity=0.677 Sum_probs=9.2
Q ss_pred cceEEeecCCCccccchhhc
Q 002187 615 LKYLNLSCQMEIERLPETLC 634 (955)
Q Consensus 615 Lr~L~L~~~~~i~~LP~~i~ 634 (955)
|++|+|++|. ++.+|.+++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 4555555553 445554433
No 303
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.45 E-value=0.054 Score=55.25 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=40.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhc-cC-CceEEEEeCCcccHHHHHHHHHHHHc-CCCCCCCChHHHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKK-KF-EKRMWICVSELFDEFRIARAIIEALT-GSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 281 (955)
+|+|.|..|+||||+|+.+... ... .. ..+..++...-+.....+.... .+. ...++..+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999873 321 11 1234455444333222222211 111 112344566666666666555
No 304
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.054 Score=56.56 Aligned_cols=89 Identities=22% Similarity=0.162 Sum_probs=56.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHH-HcC----CCCCCCChHHHHHHH
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEA-LTG----SASNFGEFQSLMQHI 276 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~l 276 (955)
+.-+++=|+|+.|.||||+|.+++- ..+..-...+|++.-..+++..+.. +... +.. .........++++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4567889999999999999977766 3444455789999999999877543 3333 221 111222223344444
Q ss_pred HHHhcCceEEEEEeCCC
Q 002187 277 QECVQRKKFLLVLDDVW 293 (955)
Q Consensus 277 ~~~l~~k~~LlVlDdvw 293 (955)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444445699999883
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.43 E-value=0.065 Score=54.82 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=70.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-----cccHHHHHHHHHHHHcCCC------C-CCCChHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE-----LFDEFRIARAIIEALTGSA------S-NFGEFQSL 272 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~-~~~~~~~~ 272 (955)
.+++|||..|.||||+++.+..= ...-.+.++..-.+ .....+...++++.++... + +....+.-
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 38999999999999999999973 23333444443221 1223344555566655321 1 11222222
Q ss_pred HHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccC--CCCCcEEEEecCChhHHHhhcC
Q 002187 273 MQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKD--GLHESKILITTRKETVACIMGS 331 (955)
Q Consensus 273 ~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 331 (955)
.-.+.+.|.-+.=+||.|..-+. +...-.++...+.+ ...|-..+..|-+-.++..+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 33577778888999999986432 11111223333322 2245567777887777776544
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.42 E-value=0.059 Score=55.85 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC-------------------
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA------------------- 263 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------- 263 (955)
.-.++.|+|.+|+|||+||.++... ..+ +=..++|++..+. ..++.+++ ++++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4568999999999999999888552 122 2346789988764 34455543 2232110
Q ss_pred -CCCCChHHHHHHHHHHhcC-ceEEEEEeCCC
Q 002187 264 -SNFGEFQSLMQHIQECVQR-KKFLLVLDDVW 293 (955)
Q Consensus 264 -~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw 293 (955)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566667666654 45589999974
No 307
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.42 E-value=0.11 Score=58.21 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998877763
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.41 E-value=0.029 Score=56.32 Aligned_cols=111 Identities=10% Similarity=0.093 Sum_probs=57.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH-HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF-RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
+|.|+|..|.||||++..+... ........+++--. +.... .-...++.+-. . ..+.....+.++..+....
T Consensus 3 lilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~-~~E~~~~~~~~~i~q~~---v-g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIED-PIEFVHESKRSLINQRE---V-GLDTLSFENALKAALRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcC-CccccccCccceeeecc---c-CCCccCHHHHHHHHhcCCc
Confidence 7899999999999999987773 33333344443222 11100 00001111100 0 0112234455667676666
Q ss_pred EEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHh
Q 002187 285 FLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACI 328 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 328 (955)
=.|++|++-+. +.+..+.... ..|..++.|+-..++...
T Consensus 76 d~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 69999999542 3333333332 235557777766555433
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.057 Score=59.02 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=49.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
-.++.++|+.|+||||++.++......+.....+..|+.... ....+-++...+.++.......+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 458999999999999999999884321211234455553321 23444555555555543322222233333333 3444
Q ss_pred ceEEEEEeCCC
Q 002187 283 KKFLLVLDDVW 293 (955)
Q Consensus 283 k~~LlVlDdvw 293 (955)
+ =+|++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 4 456689874
No 310
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.37 E-value=0.075 Score=54.81 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.9
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+...+|+|.|..|.|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999999873
No 311
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.36 E-value=0.023 Score=55.16 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=43.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCC---hHHHHHHHHHHhcC
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGE---FQSLMQHIQECVQR 282 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l~~ 282 (955)
++.|.|.+|+||||+|..+.... .. ..+++.-...++ .+....|..........-.. ...+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999887631 11 234444433333 34445554443332222111 11344444443333
Q ss_pred ceEEEEEeCC
Q 002187 283 KKFLLVLDDV 292 (955)
Q Consensus 283 k~~LlVlDdv 292 (955)
.. ++++|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 23 7889986
No 312
>PHA02244 ATPase-like protein
Probab=95.35 E-value=0.096 Score=56.57 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-|.|+|..|+|||+||+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999999999983
No 313
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.29 E-value=0.044 Score=59.66 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.7
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 179 IVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 179 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
++|+...++++.+.+..-.. .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777654332 2335899999999999999999873
No 314
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.29 E-value=0.081 Score=55.91 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=44.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccC-C-ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHH
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF-E-KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQEC 279 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (955)
....+|+|.|..|+||||+|+.+.. ...... . .+..++...-....+.....--.-....++.-+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4678999999999999999987765 222221 1 23444444333222222211000001223445667777777776
Q ss_pred hcCc
Q 002187 280 VQRK 283 (955)
Q Consensus 280 l~~k 283 (955)
-.++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 6554
No 315
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.068 Score=58.93 Aligned_cols=53 Identities=30% Similarity=0.317 Sum_probs=39.8
Q ss_pred Cccccch---hHHHHHHHHHhcCCCC---CCCCCEEEEEEcCCCChHHHHHHHHhcchh
Q 002187 177 SEIVGRE---KEKKELVNRLLCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNNVD 229 (955)
Q Consensus 177 ~~~vGr~---~~~~~i~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 229 (955)
+++-|-| .|+++|+++|-++..- ++.=.+-|.++|++|.|||-||++|+....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 3556665 5788899999766421 234467799999999999999999998543
No 316
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.034 Score=51.59 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=32.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCC
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGS 262 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 262 (955)
+|.|-|.+|.||||+|+.+.++.... .| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999854332 12 2235788888887654
No 317
>PRK05439 pantothenate kinase; Provisional
Probab=95.26 E-value=0.1 Score=55.54 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcccHHHHHHHHHHHHc--
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELFDEFRIARAIIEALT-- 260 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~-- 260 (955)
....+.+.+.... ..+...+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-+...+.+.. ..+.
T Consensus 69 ~~~~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~ 142 (311)
T PRK05439 69 RLQAALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKR 142 (311)
T ss_pred HHHHHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhcccc
Confidence 3344444444322 234678999999999999999998877 333221 22334444433322222211 1111
Q ss_pred CCCCCCCChHHHHHHHHHHhcCce
Q 002187 261 GSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
...++.-+.+.+...|.....|+.
T Consensus 143 kg~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 143 KGFPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCcccccHHHHHHHHHHHHcCCC
Confidence 112344566777777777766665
No 318
>PRK07667 uridine kinase; Provisional
Probab=95.26 E-value=0.022 Score=56.86 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 186 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+.|.+.+.... +...+|+|-|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665433 35589999999999999999999883
No 319
>PTZ00035 Rad51 protein; Provisional
Probab=95.22 E-value=0.1 Score=56.76 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhh----ccCCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVK----KKFEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
.-.++.|+|..|+|||||+..++-..... ..=..++||+....|+.++ +.++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 45689999999999999998886532211 1123467999888777766 344455554
No 320
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.22 E-value=0.095 Score=51.27 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=55.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE------eCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC------VSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQE 278 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 278 (955)
.+++|+|..|.|||||.+.+..-. ......+++. +.+... .+.-+...-.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 389999999999999999998732 2223333332 111111 1122233334555
Q ss_pred HhcCceEEEEEeCCCCc-cccChhhHHhhccCC--CCCcEEEEecCChhHHH
Q 002187 279 CVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKDG--LHESKILITTRKETVAC 327 (955)
Q Consensus 279 ~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 327 (955)
.+..+.-++++|+--.. +......+...+... ..+.-||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 56667778999986321 122222333333221 12255777777755444
No 321
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.0069 Score=60.86 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=53.9
Q ss_pred ccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCC--CCccccCccccCCCCCcEeeCCCCCCCcccccC---CCC
Q 002187 609 IEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSC--SNLRELPQGIGKLRKLMHLENDQTDSLRYLPVG---IGE 683 (955)
Q Consensus 609 i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~---i~~ 683 (955)
.-.+..|++|++.++. ++.+-. +-.|++|++|+++.| +....++.-..++++|++|++++|. ++. +.. +..
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhh
Confidence 3345666777776665 443322 445889999999999 5445566666778999999999994 322 222 345
Q ss_pred CCCCCccceeEec
Q 002187 684 LISLRRVSKLVVG 696 (955)
Q Consensus 684 l~~L~~L~~~~~~ 696 (955)
+.+|..|+++.+.
T Consensus 115 l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 115 LENLKSLDLFNCS 127 (260)
T ss_pred hcchhhhhcccCC
Confidence 5555566655544
No 322
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.22 E-value=0.19 Score=48.23 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=71.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe---------------------CCcc-----------------
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICV---------------------SELF----------------- 246 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------------------s~~~----------------- 246 (955)
..+.++|.+|.|||||.+.+|...+.. ...+|+.- -|++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~ 105 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLR 105 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhh
Confidence 389999999999999999999864322 23444421 1111
Q ss_pred ----cHHHHHHHHHHHH---cCC------CCCCCChHHHHHHHHHHhcCceEEEEEeCCC-Cccc-cChhhHHhhccCCC
Q 002187 247 ----DEFRIARAIIEAL---TGS------ASNFGEFQSLMQHIQECVQRKKFLLVLDDVW-NEDY-CKWEPFYHCLKDGL 311 (955)
Q Consensus 247 ----~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw-~~~~-~~~~~l~~~l~~~~ 311 (955)
...++-+.+.+.+ +.. ....+..++-.-.|.+.+-+++-+++-|.-- +-++ ..|+-+.-.-.-+.
T Consensus 106 v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr 185 (223)
T COG2884 106 VIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185 (223)
T ss_pred ccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh
Confidence 1122222222222 221 1122333444556777777888899988531 1122 23444333333456
Q ss_pred CCcEEEEecCChhHHHhhc
Q 002187 312 HESKILITTRKETVACIMG 330 (955)
Q Consensus 312 ~gs~iivTtr~~~v~~~~~ 330 (955)
.|+-||++|-+..+.+.+.
T Consensus 186 ~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 186 LGTTVLMATHDLELVNRMR 204 (223)
T ss_pred cCcEEEEEeccHHHHHhcc
Confidence 7999999999988777653
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.19 E-value=0.14 Score=53.13 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=33.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.-+++.|.|.+|+|||++|.++... .. ..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 5569999999999999999776542 12 2345688888766 44455554
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.18 E-value=0.16 Score=57.08 Aligned_cols=57 Identities=26% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALT 260 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~ 260 (955)
....+|.++|.+|+||||.|..++.... ..-..++-|++... +...+.++.++.+++
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 3578999999999999999999987433 22123334443321 122334455555544
No 325
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.16 E-value=0.037 Score=58.95 Aligned_cols=84 Identities=21% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-+++-|+|..|+||||||..+.. ..+..-...+||.+...++... +++++.+.. .....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 345999999999999999988887 3444445688999988776643 444443211 1223455556666
Q ss_pred HHhcC-ceEEEEEeCCC
Q 002187 278 ECVQR-KKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~~-k~~LlVlDdvw 293 (955)
..++. .--++|+|.|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 66654 34488999883
No 326
>PTZ00301 uridine kinase; Provisional
Probab=95.15 E-value=0.028 Score=56.62 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999999887
No 327
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.14 E-value=0.16 Score=51.08 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeCCC-CccccChhhHHhhccCC--CCCcEEEEecCChhHHHhhc
Q 002187 270 QSLMQHIQECVQRKKFLLVLDDVW-NEDYCKWEPFYHCLKDG--LHESKILITTRKETVACIMG 330 (955)
Q Consensus 270 ~~~~~~l~~~l~~k~~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 330 (955)
++-.-.+.+.|-..+-+|+-|+=- +-+...-+.+...+..- ..|.-||+.|-+..+|..++
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 444556777787888899999631 11122233344444432 34778999999999998754
No 328
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.10 E-value=0.088 Score=51.44 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=62.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcch---hhhcc---CC--ceEEEEeCCcccHHHHHHHHHHHHcCCCC--C--C---CCh
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNV---DVKKK---FE--KRMWICVSELFDEFRIARAIIEALTGSAS--N--F---GEF 269 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~--~---~~~ 269 (955)
.+++|+|..|.|||||.+.+..+. .+... |. .+.|+ .+ .+.++.++.... + . +.-
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 389999999999999999886321 11111 11 12232 22 345555553211 1 1 111
Q ss_pred HHHHHHHHHHhcCc--eEEEEEeCCCC-ccccChhhHHhhccCC-CCCcEEEEecCChhHHHhhcCcceEeC
Q 002187 270 QSLMQHIQECVQRK--KFLLVLDDVWN-EDYCKWEPFYHCLKDG-LHESKILITTRKETVACIMGSTNIISI 337 (955)
Q Consensus 270 ~~~~~~l~~~l~~k--~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 337 (955)
+...-.+...+-.+ .=++++|+--. -+....+.+...+..- ..|..||++|.+...... .+.++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22223344455555 66888898632 1222233344443321 246678888888766543 3344444
No 329
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.14 Score=50.24 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=59.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC--CCC---C---------CCChH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG--SAS---N---------FGEFQ 270 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~~~---~---------~~~~~ 270 (955)
.+++|+|..|.|||||.+.++... ......+++.-....+.. ..+...+.. +.. . .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 389999999999999999998842 223344444211100000 011111110 000 0 11112
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccCC-CCCcEEEEecCChhHHH
Q 002187 271 SLMQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKDG-LHESKILITTRKETVAC 327 (955)
Q Consensus 271 ~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 327 (955)
...-.+...+..++=++++|+--.. +......+...+..- ..|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2233455666677789999987431 222223344433321 23567888888766554
No 330
>PTZ00494 tuzin-like protein; Provisional
Probab=95.09 E-value=0.36 Score=52.59 Aligned_cols=170 Identities=17% Similarity=0.134 Sum_probs=107.0
Q ss_pred ccCCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHH
Q 002187 172 SSIDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRI 251 (955)
Q Consensus 172 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 251 (955)
.+.....+|.|+++-..+-..|.+-. ..+++++.+.|.-|.||++|.+.....+.+ ..++|.|... ++-
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cch
Confidence 34456789999998888888886553 358899999999999999999887764332 3567877654 456
Q ss_pred HHHHHHHHcCCCCCC-CC-h---HHHHHHHHHHhcCceEEEEEeCCCCcc-ccChhhHHhhccCCCCCcEEEEecCChhH
Q 002187 252 ARAIIEALTGSASNF-GE-F---QSLMQHIQECVQRKKFLLVLDDVWNED-YCKWEPFYHCLKDGLHESKILITTRKETV 325 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~-~~-~---~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v 325 (955)
++.|++.++....+. .| + .+....-.....++.-+||+-=-.-.+ ...+.+. ..|.....-|+|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhh
Confidence 788999998765432 12 1 122222222345666677764221111 0111111 234455567888887665544
Q ss_pred HHhh---cCcceEeCCCCChhhHHHHhHhhh
Q 002187 326 ACIM---GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 326 ~~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
-... .-...|.++.++.++|.++-++..
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 3221 224578999999999999876653
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=95.06 E-value=0.16 Score=54.90 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc--HHHHHHHHHHHHcCCCC---CCCChHHH-HHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD--EFRIARAIIEALTGSAS---NFGEFQSL-MQHI 276 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 276 (955)
+..+|.++|+.|+||||++..++.... ...+ .++.+.. ..+. ....++..+..++.... ...+...+ .+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888887332 1223 2334432 2222 23334555666653221 11222222 2222
Q ss_pred HHHhcCceEEEEEeCCCC
Q 002187 277 QECVQRKKFLLVLDDVWN 294 (955)
Q Consensus 277 ~~~l~~k~~LlVlDdvw~ 294 (955)
........=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222222889998743
No 332
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.04 E-value=0.14 Score=53.11 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+..|+|.+|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988876
No 333
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.03 E-value=0.13 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999999984
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.01 E-value=0.13 Score=54.26 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH--HHHHHHHHHHHcCCC---CCCCChHH-HHHH
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE--FRIARAIIEALTGSA---SNFGEFQS-LMQH 275 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 275 (955)
.+.+++.++|.+|+||||.+..++... ...-..++++++.. +.. .+-+....+..+... ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 356899999999999999998888733 33323455565442 322 223333444443221 11122222 2233
Q ss_pred HHHHhcCceEEEEEeCCC
Q 002187 276 IQECVQRKKFLLVLDDVW 293 (955)
Q Consensus 276 l~~~l~~k~~LlVlDdvw 293 (955)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 443333444478888763
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.00 E-value=0.2 Score=53.26 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=35.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL 259 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 259 (955)
.++.|.|.+|+||||++.+++...- ..+=..++|++... +..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 3888999999999999988876321 22124578888766 3455555555543
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.98 E-value=0.085 Score=57.27 Aligned_cols=57 Identities=26% Similarity=0.255 Sum_probs=40.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
.-.++-|+|.+|+||||++.+++-...... .=..++||+....|+...+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 456889999999999999988875322211 11268899999888877654 4455544
No 337
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.97 E-value=0.17 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
....+|.++|..|+||||+|..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999888763
No 338
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.96 E-value=0.068 Score=62.23 Aligned_cols=134 Identities=14% Similarity=0.221 Sum_probs=75.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
...++|+...++++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.. ...-...+.|+++.-.+ ..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~~--~~~--- 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALPE--SLA--- 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCCh--HHH---
Confidence 45799999999888888865432 33468899999999999999998832 11222345666665432 111
Q ss_pred HHHHcCCCCCC-CC-hHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecCC
Q 002187 256 IEALTGSASNF-GE-FQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTRK 322 (955)
Q Consensus 256 ~~~l~~~~~~~-~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 322 (955)
-..+.+...+. .. .......+. ..+ .=-|+||++..-.......+...+..+. ...|||.||..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~--~a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFE--LAD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred HHHhcCccccccCCCcccCCcchh--hcC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11222211100 00 000000111 112 2246899997765555666766665432 14588888865
Q ss_pred h
Q 002187 323 E 323 (955)
Q Consensus 323 ~ 323 (955)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 339
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.96 E-value=0.035 Score=52.48 Aligned_cols=35 Identities=31% Similarity=0.296 Sum_probs=26.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC 241 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 241 (955)
.||.|.|.+|+||||||+++.+ +....-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 5899999999999999999999 4444434455554
No 340
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.94 E-value=0.098 Score=52.75 Aligned_cols=87 Identities=21% Similarity=0.260 Sum_probs=49.3
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-------ceEEEEeCCcccHHHH--HHHHHHHHcCCCCCC-----
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-------KRMWICVSELFDEFRI--ARAIIEALTGSASNF----- 266 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------~~~wv~vs~~~~~~~~--~~~i~~~l~~~~~~~----- 266 (955)
.++..+|.++||+|.||||+.|.++.+..-+..-. .+.=|...-+.|+++. .++..++....+.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34567888999999999999999887543222111 1112223344566554 456777766443221
Q ss_pred ----CChHHHHHHHHHHhcCceEEE
Q 002187 267 ----GEFQSLMQHIQECVQRKKFLL 287 (955)
Q Consensus 267 ----~~~~~~~~~l~~~l~~k~~Ll 287 (955)
...++++..+.+.-..-+|.|
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~l 120 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVL 120 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEE
Confidence 234555555555544434443
No 341
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.28 Score=50.21 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=65.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchh-hhc---cC----------CceEEEEeCCcc------cH----------------
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVD-VKK---KF----------EKRMWICVSELF------DE---------------- 248 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~---~F----------~~~~wv~vs~~~------~~---------------- 248 (955)
.+++|+|+.|.|||||.+.+..-.. .++ .| ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999988211 000 01 134455311100 11
Q ss_pred ------HHHHHHHHHHHcCC-----CCCCCC-hHHHHHHHHHHhcCceEEEEEeCC----CCccccChhhHHhhccCCCC
Q 002187 249 ------FRIARAIIEALTGS-----ASNFGE-FQSLMQHIQECVQRKKFLLVLDDV----WNEDYCKWEPFYHCLKDGLH 312 (955)
Q Consensus 249 ------~~~~~~i~~~l~~~-----~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv----w~~~~~~~~~l~~~l~~~~~ 312 (955)
.+...+.++.++.. ....-+ -+.-.-.|.+.|..+.=|+|||.- +.......-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 13333444444422 111122 233344577788888899999974 222223333444444444
Q ss_pred CcEEEEecCChh
Q 002187 313 ESKILITTRKET 324 (955)
Q Consensus 313 gs~iivTtr~~~ 324 (955)
|.-||+.|-+-.
T Consensus 189 g~tIl~vtHDL~ 200 (254)
T COG1121 189 GKTVLMVTHDLG 200 (254)
T ss_pred CCEEEEEeCCcH
Confidence 788999888743
No 342
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.013 Score=34.96 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=18.8
Q ss_pred cccEEEcCCCCcccccccccCC
Q 002187 591 CLRTLKLDGSVIIEIPTNIEKL 612 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~i~~L 612 (955)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887764
No 343
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.12 Score=56.11 Aligned_cols=90 Identities=19% Similarity=0.087 Sum_probs=52.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGSASNFGEFQSLMQHIQECV 280 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (955)
.+.+++.++|+.|+||||++..++... ...-..+.+|++.... ....-++...+.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356799999999999999998888643 2222345566654332 2233445555554433222234455555454432
Q ss_pred c-CceEEEEEeCCC
Q 002187 281 Q-RKKFLLVLDDVW 293 (955)
Q Consensus 281 ~-~k~~LlVlDdvw 293 (955)
. +..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 334577888764
No 344
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.43 Score=50.86 Aligned_cols=156 Identities=11% Similarity=0.073 Sum_probs=88.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcch--------hhhccCCceEEEEe-CCcccHHHHHHHHHHHHcCCCCCCCChHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNV--------DVKKKFEKRMWICV-SELFDEFRIARAIIEALTGSASNFGEFQSLMQ 274 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 274 (955)
..+..++|..|.||+++|..+.+.. ....|=+...++.. +....++++ +++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 4466699999999999998887632 00111112333321 111222221 12222221111
Q ss_pred HHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecC-ChhHHHh-hcCcceEeCCCCChhhHHHHhHhh
Q 002187 275 HIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTR-KETVACI-MGSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 275 ~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
.-++++=++|+|++..........+...+......+.+|++|. ...+... ......+++.++++++....+...
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 0024677889999876655566778888877767777776554 3444433 334678999999999998777653
Q ss_pred hcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 353 AFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
. . + ++.+..++...+|.=-|+..
T Consensus 162 ~---~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 N---K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred C---C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 1 1 12355566666663344444
No 345
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.87 E-value=0.066 Score=51.85 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=60.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--ccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL--FDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
+++|+|..|.|||||.+.++... ......+++.-... .+..+..+ ..++.. ...+..+...-.+...+-.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHhcC
Confidence 89999999999999999998732 23445555532111 11111111 111110 01222233333455556667
Q ss_pred eEEEEEeCCCC-ccccChhhHHhhccCC-CCCcEEEEecCChhHH
Q 002187 284 KFLLVLDDVWN-EDYCKWEPFYHCLKDG-LHESKILITTRKETVA 326 (955)
Q Consensus 284 ~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~ 326 (955)
+-++++|+--. -+......+...+..- ..|.-||++|.+....
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 77889998643 1222333444444322 2356688888876543
No 346
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.18 Score=55.66 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=50.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc--cCCceEEEEeCCcccH--HHHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK--KFEKRMWICVSELFDE--FRIARAIIEALTGSASNFGEFQSLMQHIQE 278 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 278 (955)
...+|.++|..|+||||.+..++....... +-..+.-|++. .+.. ...++..++.++..-....+.+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999988887433221 11234445544 3332 222444555554432222344455544444
Q ss_pred HhcCceEEEEEeCCCC
Q 002187 279 CVQRKKFLLVLDDVWN 294 (955)
Q Consensus 279 ~l~~k~~LlVlDdvw~ 294 (955)
. .+.=+|++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3445888998753
No 347
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.80 E-value=0.19 Score=52.67 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=46.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc-C
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ-R 282 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~ 282 (955)
.+++++|.+|+||||+++.+.... ...=..+.+++..... ....-++...+.++.......+.+.+...+...-+ +
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 589999999999999999887632 2211234556554321 12222223333333221122344444444433322 2
Q ss_pred ceEEEEEeCCCC
Q 002187 283 KKFLLVLDDVWN 294 (955)
Q Consensus 283 k~~LlVlDdvw~ 294 (955)
+.=++++|..-.
T Consensus 154 ~~D~ViIDt~Gr 165 (270)
T PRK06731 154 RVDYILIDTAGK 165 (270)
T ss_pred CCCEEEEECCCC
Confidence 345888898743
No 348
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.77 E-value=0.066 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.....++|+|++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999994
No 349
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.73 E-value=0.081 Score=53.68 Aligned_cols=121 Identities=11% Similarity=0.123 Sum_probs=59.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC---CCCChHHHHHHHHHH-
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS---NFGEFQSLMQHIQEC- 279 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~- 279 (955)
.+++.|+|..|.||||+.+.+....... +...|+.+.. ... ..+.++...+..... .......-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la---~~G~~v~a~~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLA---HIGSFVPADS-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHH---hCCCeeEcCC-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 4789999999999999999987532111 1122222211 100 111122222221111 011111111222222
Q ss_pred -hcCceEEEEEeCCCCcc-ccChh----hHHhhccCC-CCCcEEEEecCChhHHHhh
Q 002187 280 -VQRKKFLLVLDDVWNED-YCKWE----PFYHCLKDG-LHESKILITTRKETVACIM 329 (955)
Q Consensus 280 -l~~k~~LlVlDdvw~~~-~~~~~----~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 329 (955)
+..++-|++||..-... ..+.. .+...+... ..+..+|+||-..+++...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 23678899999985422 11111 222333322 2346799999998877654
No 350
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.72 E-value=0.11 Score=51.01 Aligned_cols=115 Identities=13% Similarity=0.173 Sum_probs=57.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc--ccHHHHHHHHHHHHcC--CCCC----------CCChHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL--FDEFRIARAIIEALTG--SASN----------FGEFQS 271 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~--~~~~----------~~~~~~ 271 (955)
+++|+|..|.|||||.+.++.-. ......+++.-... ...... ...+.. +... .+..+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHHH
Confidence 89999999999999999998732 22333443321110 011111 111110 0000 111122
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccCC-CCCcEEEEecCChhHHH
Q 002187 272 LMQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKDG-LHESKILITTRKETVAC 327 (955)
Q Consensus 272 ~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 327 (955)
..-.+...+-.+.=++++|+-... +......+...+..- ..|..||++|.+.....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 223344555556668899987431 222223333333321 23667888888766554
No 351
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.71 E-value=0.021 Score=52.73 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 002187 207 ISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~ 227 (955)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 352
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.70 E-value=0.17 Score=58.31 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=43.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEE
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWIC 241 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 241 (955)
..+++--.+-++++..||...-. +....+++.+.|++|+||||.++.+++.. .|+.+=|.+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 34555556667888888865332 22345699999999999999999999842 355566764
No 353
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.65 E-value=0.023 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998884
No 354
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.16 Score=54.77 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=53.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQE 278 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 278 (955)
-.+|.|-|-+|||||||..+++. +....- .+++|+-.+...- .+--++.++.... .+.+.+++.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 45899999999999999999988 444443 6778876654322 2233455553322 23445554444443
Q ss_pred HhcCceEEEEEeCCCC
Q 002187 279 CVQRKKFLLVLDDVWN 294 (955)
Q Consensus 279 ~l~~k~~LlVlDdvw~ 294 (955)
.+.-|+|+|-+.+
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 6788999999854
No 355
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.62 E-value=0.08 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998884
No 356
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.61 E-value=0.028 Score=57.07 Aligned_cols=25 Identities=44% Similarity=0.678 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999884
No 357
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.60 E-value=0.1 Score=57.32 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=49.6
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCC-
Q 002187 177 SEIVGREKEKKELVNRLLCE--------SSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVSE- 244 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~- 244 (955)
..++|.++.++.+.-.+... .-...-..+-|.++|++|+|||++|+.+... ....| +..-++..+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 46889988888887666532 0001112357889999999999999999984 33333 3322222221
Q ss_pred cccHHHHHHHHHHHH
Q 002187 245 LFDEFRIARAIIEAL 259 (955)
Q Consensus 245 ~~~~~~~~~~i~~~l 259 (955)
..+.+.+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 358
>PRK04328 hypothetical protein; Provisional
Probab=94.58 E-value=0.11 Score=54.27 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF 246 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 246 (955)
.-.++.|.|.+|.|||+||.++... .. ..-...+||+..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCCH
Confidence 4568999999999999999876553 22 234567888877643
No 359
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.57 E-value=0.14 Score=53.83 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
.-+++.|.|.+|+|||++|.+++... .+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 45689999999999999998875531 22 234678888764
No 360
>PRK06547 hypothetical protein; Provisional
Probab=94.51 E-value=0.049 Score=53.04 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999874
No 361
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.48 E-value=0.096 Score=52.80 Aligned_cols=83 Identities=23% Similarity=0.211 Sum_probs=50.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcC-------CCCCCCChH-----HH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTG-------SASNFGEFQ-----SL 272 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~-----~~ 272 (955)
-++|+|..|+|||+|+..+.+.. .-+..+++.+++.. .+.++.+++...-.. ...+..... ..
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred EEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 68999999999999999998843 23445888887653 455555555332100 011111111 11
Q ss_pred HHHHHHHh--cCceEEEEEeCC
Q 002187 273 MQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 273 ~~~l~~~l--~~k~~LlVlDdv 292 (955)
.-.+.+++ +++..|+++||+
T Consensus 93 a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 93 ALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHTTSEEEEEEETH
T ss_pred chhhhHHHhhcCCceeehhhhh
Confidence 12233333 689999999999
No 362
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.45 E-value=0.037 Score=56.58 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999873
No 363
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.14 Score=49.64 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|-+.|.+|+||||+|++++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHH
Confidence 5778999999999999999984
No 364
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.40 E-value=0.076 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 365
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.37 E-value=0.079 Score=54.27 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhc-ccCcHHHHHHHHHHHHHHhhcchhhhhh
Q 002187 5 IISPLLEQLTSMTVEEAKEQVRLVTGVGKEAKKLTSNLRAIQAVLHDAEKR-QVKEETVRLWLDQLRHACYDMEDVLGEW 83 (955)
Q Consensus 5 ~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~ayd~ed~ld~~ 83 (955)
.|..++++|-. ........+.-++.+++-++.+|+.+|.||+..... ...-......+.++-+.||++|+++|.+
T Consensus 297 yVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 45566666655 222222345567899999999999999999987443 3333448889999999999999999987
Q ss_pred H
Q 002187 84 N 84 (955)
Q Consensus 84 ~ 84 (955)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 366
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.33 E-value=0.11 Score=57.19 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=49.7
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeC-C
Q 002187 177 SEIVGREKEKKELVNRLLCE--------SSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVS-E 244 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~ 244 (955)
..++|.++.++.+..++... .........-+.++|+.|+|||++|+.+... ....| +..-|...+ .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 46899999999888877531 0000112357899999999999999999884 33333 332222211 1
Q ss_pred cccHHHHHHHHHHHH
Q 002187 245 LFDEFRIARAIIEAL 259 (955)
Q Consensus 245 ~~~~~~~~~~i~~~l 259 (955)
..+...+++++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225556666665544
No 367
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.32 E-value=0.035 Score=56.29 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.-.+|+|+|.+|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999873
No 368
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.28 E-value=0.15 Score=56.23 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=47.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+.. .++ ..-++.++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3458999999999999999988873 33333457788765432 222 222344443211 1223344433332
Q ss_pred HHhcCceEEEEEeCC
Q 002187 278 ECVQRKKFLLVLDDV 292 (955)
Q Consensus 278 ~~l~~k~~LlVlDdv 292 (955)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235557888887
No 369
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.27 E-value=0.069 Score=64.77 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=86.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC---CCCCChHHHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA---SNFGEFQSLMQHIQEC 279 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 279 (955)
+..++.|+|+.|.||||+.+.+....-. ....++|.+...... ..+.++...++... ........-...+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 3468999999999999999988763111 111223332221000 01111111111000 0000111111122223
Q ss_pred hc--CceEEEEEeCCCCc-cccChhhH----HhhccCCCCCcEEEEecCChhHHHhhcCcceEeCCCCCh-hhHHHHhHh
Q 002187 280 VQ--RKKFLLVLDDVWNE-DYCKWEPF----YHCLKDGLHESKILITTRKETVACIMGSTNIISINVLSE-MGCWLVFEP 351 (955)
Q Consensus 280 l~--~k~~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~-~~~~~lf~~ 351 (955)
+. .++-|+++|..-.. ++.....+ ...+. ..|+.+|+||....+.........+.-..+.. .+... |..
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 32 47889999998542 12222223 22332 25788999999987765432211111111111 11111 111
Q ss_pred hhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHHHhh
Q 002187 352 LAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNILES 405 (955)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~ 405 (955)
+... +. + -...|-+|++++ |+|-.|.--|.-+... ...+...+++.
T Consensus 474 kl~~-G~----~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~ 519 (771)
T TIGR01069 474 KLLK-GI----P-GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEK 519 (771)
T ss_pred EECC-CC----C-CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 1111 11 0 123477787777 8888888888766443 23344444443
No 370
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.25 E-value=0.11 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|+|+|.+|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 566999999999999999999988
No 371
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.25 E-value=0.078 Score=55.61 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|.|.|.+|+||||+|+.+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6889999999999999998884
No 372
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.24 E-value=0.056 Score=57.66 Aligned_cols=51 Identities=29% Similarity=0.367 Sum_probs=44.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...|+|.++.++++++.+...+...+..-+|+.++|+.|.||||||+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999766554566788999999999999999999887
No 373
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.84 Score=51.69 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=61.4
Q ss_pred CccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.++=|.++.+.++.+++..-..+ +-...+-|.++|++|.|||.||++++++. .-. ++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch-----
Confidence 45778888888877776532211 23346678899999999999999999943 322 3333321
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWN 294 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~ 294 (955)
+|+..+.+ ...+.+.+...+.-+.-.+++++|+++-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 12222222 2234444445555567899999999953
No 374
>PRK06217 hypothetical protein; Validated
Probab=94.22 E-value=0.13 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcch
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999853
No 375
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.20 E-value=0.034 Score=58.55 Aligned_cols=96 Identities=26% Similarity=0.245 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCC
Q 002187 187 KELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNF 266 (955)
Q Consensus 187 ~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 266 (955)
..+++.+... -+-|.++|..|+|||++++.......- ..| ...-++.|...+...+ +.+++.-.......
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC
Confidence 4556666543 336799999999999999988763211 111 1334455554333332 22222111100000
Q ss_pred CChHHHHHHHHHHhcCceEEEEEeCCCCccccChh
Q 002187 267 GEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWE 301 (955)
Q Consensus 267 ~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~ 301 (955)
. ..--.+|+.++.+||+--...+.|.
T Consensus 93 -~--------~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 -V--------YGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp -E--------EEEESSSEEEEEEETTT-S---TTS
T ss_pred -C--------CCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 0001368999999999655444544
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.44 Score=47.36 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeCCCCc-cccChhhHHhhccC-CCCCcEEEEecCChhHHHhhcCcceE
Q 002187 270 QSLMQHIQECVQRKKFLLVLDDVWNE-DYCKWEPFYHCLKD-GLHESKILITTRKETVACIMGSTNII 335 (955)
Q Consensus 270 ~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~ 335 (955)
+.-...|.+.+-=++-+.|||..++- +.+..+.+...+.. ..+|+-+++.|..+.++..+..+.++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33344455555556679999988642 12222222222211 12466788888888899887665444
No 377
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.11 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999873
No 378
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.17 E-value=0.027 Score=50.71 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCC
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNVDVKKKFE 235 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 235 (955)
|.|+|.+|+||||+|+.++. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67899999999999999998 5666664
No 379
>PRK06762 hypothetical protein; Provisional
Probab=94.14 E-value=0.038 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 380
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.41 Score=55.78 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=75.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
...+.+.++|++|.|||.||+++++ ..+.+|- .+... +++.... ......+........+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~--------~l~sk~v-----Gesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS--------ELLSKWV-----GESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH--------HHhcccc-----chHHHHHHHHHHHHHc
Confidence 4566899999999999999999999 3334442 22211 1111110 0112233334444445
Q ss_pred CceEEEEEeCCCCc------cc-----cChhhHHhhccCC--CCCcEEEEecCChhHHH-hh----cCcceEeCCCCChh
Q 002187 282 RKKFLLVLDDVWNE------DY-----CKWEPFYHCLKDG--LHESKILITTRKETVAC-IM----GSTNIISINVLSEM 343 (955)
Q Consensus 282 ~k~~LlVlDdvw~~------~~-----~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~ 343 (955)
.....|.+|+++.- +. ....++...+..- ..+-.||-||....... .+ .-...+.+++-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999998531 00 1122233333222 23334555555433222 11 12568889999999
Q ss_pred hHHHHhHhhhc
Q 002187 344 GCWLVFEPLAF 354 (955)
Q Consensus 344 ~~~~lf~~~~~ 354 (955)
+..+.|+.+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 381
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.11 E-value=0.21 Score=55.71 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=49.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCC------CCCCCCh-----HHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGS------ASNFGEF-----QSLM 273 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~-----~~~~ 273 (955)
..++|+|..|+|||||++.+.... .....++|.......++.++....+...... ..+.... ....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 379999999999999999888732 2223445554333445555444443333111 1111111 1222
Q ss_pred HHHHHHh--cCceEEEEEeCCC
Q 002187 274 QHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 274 ~~l~~~l--~~k~~LlVlDdvw 293 (955)
-.+.+++ +++..|+++||+-
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchH
Confidence 3344454 5899999999993
No 382
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.10 E-value=0.073 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 383
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.064 Score=48.98 Aligned_cols=72 Identities=18% Similarity=0.181 Sum_probs=43.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
..-|.|.|.+|+||||+|..++... ..-|+++|.-..-..+....=++. ....-+.+.+.+.|...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 3458899999999999999998622 134777776433322222211111 122345677777787777654
Q ss_pred eE
Q 002187 284 KF 285 (955)
Q Consensus 284 ~~ 285 (955)
.+
T Consensus 77 g~ 78 (176)
T KOG3347|consen 77 GN 78 (176)
T ss_pred Cc
Confidence 44
No 384
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.07 E-value=0.075 Score=48.78 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcch
Q 002187 184 KEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 184 ~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
++.+++.+.|...-. .-.+|.+.|.-|.||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555543211 23489999999999999999999854
No 385
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.06 E-value=0.28 Score=47.94 Aligned_cols=118 Identities=16% Similarity=0.043 Sum_probs=64.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceE---EEEeCCcccHHHHHHHHH--HHH--cCC-CCCCCC-------
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRM---WICVSELFDEFRIARAII--EAL--TGS-ASNFGE------- 268 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~~~~~i~--~~l--~~~-~~~~~~------- 268 (955)
...|-|+|-.|-||||.|..+.- +...+=-.+. |+.-........++..+- ... +.. .....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 35899999999999999977665 2222211222 332222233333333310 000 000 000011
Q ss_pred hHHHHHHHHHHhcCceE-EEEEeCCCC---ccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 269 FQSLMQHIQECVQRKKF-LLVLDDVWN---EDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 269 ~~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
........++.+...+| |||||.+-. ...-..+.+...+.....+..||+|-|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233445555555555 999999832 22344566777777766778999999984
No 386
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.038 Score=54.05 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchh
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVD 229 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 229 (955)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45899999999999999999998543
No 387
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.01 E-value=0.52 Score=47.72 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999763
No 388
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.01 E-value=0.21 Score=56.06 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=53.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCC-------CCCCCChH-----HH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGS-------ASNFGEFQ-----SL 272 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~ 272 (955)
-++|.|..|+|||||+..+...... ++=+.++++-+.+.. .+.++..++...=... ..+..... ..
T Consensus 146 R~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 146 KIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 6899999999999999988764221 112356777776654 3455555555431111 11222211 22
Q ss_pred HHHHHHHh---cCceEEEEEeCC
Q 002187 273 MQHIQECV---QRKKFLLVLDDV 292 (955)
Q Consensus 273 ~~~l~~~l---~~k~~LlVlDdv 292 (955)
.-.+.+++ ++++.||++|++
T Consensus 225 a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecch
Confidence 33466666 679999999999
No 389
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.01 E-value=0.13 Score=60.06 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+.... ...-...+.++++.-++ ..+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~~--~~~e--- 272 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIPD--DVVE--- 272 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCCH--HHHH---
Confidence 4689999888888777643221 12248899999999999999986621 11112335566655432 2211
Q ss_pred HHHcCCCCC-CCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecCCh
Q 002187 257 EALTGSASN-FGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTRKE 323 (955)
Q Consensus 257 ~~l~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 323 (955)
..+.+...+ .........-+-+ +...=.|+||+++.-.......+...+..+. ...|||.||...
T Consensus 273 ~elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 273 SELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HHhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 122221110 0000000000000 1122347899997655545556666665431 124788887653
No 390
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.53 Score=53.87 Aligned_cols=56 Identities=30% Similarity=0.286 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF 234 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 234 (955)
+++=|-++...++.+...-+.. -+-...+-|..+|++|.|||++|+++++ ..+-.|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 3455566655555544432210 0224567899999999999999999999 444444
No 391
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.00 E-value=0.13 Score=51.80 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=61.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCC---hHHHHHHHHHHh
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGE---FQSLMQHIQECV 280 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l 280 (955)
..++.|.|..|.||||+.+.+....-.. + ...+|.+.. .. -.+...|...+......... ...-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3689999999999999999887532111 1 122222211 11 12223333333322111111 111111122222
Q ss_pred --cCceEEEEEeCCCCcc-ccC----hhhHHhhccCCCCCcEEEEecCChhHHHhhcC
Q 002187 281 --QRKKFLLVLDDVWNED-YCK----WEPFYHCLKDGLHESKILITTRKETVACIMGS 331 (955)
Q Consensus 281 --~~k~~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~ 331 (955)
..++-|+++|..-... ..+ ...+...+.. .|+.+|++|-..+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3567899999974321 111 1123333333 37889999999888876543
No 392
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.71 Score=54.51 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=101.8
Q ss_pred Cccccchh---HHHHHHHHHhcCCCC---CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREK---EKKELVNRLLCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~---~~~~i~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.++.|-++ |+++++++|..+..- +..-++=+.++|++|.|||-||++++.... +=|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 35777764 566677777554321 223466788999999999999999999433 334555542
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc---------------cChhhHHhhccCCCC--C
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY---------------CKWEPFYHCLKDGLH--E 313 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~---------------~~~~~l~~~l~~~~~--g 313 (955)
+.++-+.+.. . ..+.+.....-...+++|.+|+++.... ....++..-+..... +
T Consensus 379 ---EFvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1222222111 0 1111122222235678888888753211 112222222222222 2
Q ss_pred cEEEEecCChhHHHh--h--c-CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 314 SKILITTRKETVACI--M--G-STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 314 s~iivTtr~~~v~~~--~--~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
--+|-+|+..++... + + -+..+.++.=+.....++|..++-.-. ...+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHH
Confidence 234445555444322 1 1 256788888889999999998874322 2245566666 888888877554
No 393
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.98 E-value=0.15 Score=60.97 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-+++-|+|.+|+||||||.+++.. ....=..++|+...+.++.. .+++++.+.. .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4668889999999999999776552 22333557899988877743 5666664321 1223455555666
Q ss_pred HHhcC-ceEEEEEeCCC
Q 002187 278 ECVQR-KKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~~-k~~LlVlDdvw 293 (955)
..+.. +--|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 65644 45589999984
No 394
>PRK03839 putative kinase; Provisional
Probab=93.89 E-value=0.041 Score=54.41 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 395
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.86 E-value=0.38 Score=57.55 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=80.6
Q ss_pred ccccchhHHHHHHHHH---hcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHH
Q 002187 178 EIVGREKEKKELVNRL---LCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRI 251 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 251 (955)
++.|.+...+++.+.+ ..+.. .+..-.+-|.++|.+|.|||++|+.+++. ....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 5677766555554433 22110 00112334899999999999999999883 32232 2222221 1
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc----------ccChhhHHhhc----cC--CCCCcE
Q 002187 252 ARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED----------YCKWEPFYHCL----KD--GLHESK 315 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~l~~~l----~~--~~~gs~ 315 (955)
...... .....+...+.......+.+|++|+++.-. ...++.....+ .. ...+.-
T Consensus 222 ----~~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 ----VEMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred ----HHhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 111111 011223333333334567899999985421 01122222221 11 123445
Q ss_pred EEEecCChhHHH-hh-c---CcceEeCCCCChhhHHHHhHhhhc
Q 002187 316 ILITTRKETVAC-IM-G---STNIISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 316 iivTtr~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~ 354 (955)
||.||....... .+ . -...+.++.-+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 666777654332 21 1 246778888888888888877653
No 396
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.41 Score=57.08 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=45.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc--HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD--EFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
-.|++++|..|+||||.+.+++...........+..++.. .+. ..+.++...+.++.......+.+++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4699999999999999998888743222111234455433 222 3334444444444332222234444444432 33
Q ss_pred CceEEEEEeCC
Q 002187 282 RKKFLLVLDDV 292 (955)
Q Consensus 282 ~k~~LlVlDdv 292 (955)
++. +|++|=.
T Consensus 263 ~~D-~VLIDTA 272 (767)
T PRK14723 263 DKH-LVLIDTV 272 (767)
T ss_pred CCC-EEEEeCC
Confidence 332 5556654
No 397
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.82 E-value=0.46 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 38999999999999999999864
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.77 E-value=0.42 Score=54.18 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=45.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
-.|++++|..|+||||.+.+++.....+..-..+..|..... ....+-++...+.++.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 469999999999999999999874322221123445554321 2233334444444443322112222222222 23334
Q ss_pred ceEEEEEeCCC
Q 002187 283 KKFLLVLDDVW 293 (955)
Q Consensus 283 k~~LlVlDdvw 293 (955)
+ ..+++|-.-
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 466777653
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.77 E-value=0.31 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.-.+++++|..|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999888763
No 400
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.75 E-value=0.12 Score=52.58 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
+..++++.+.... ++..+|+|.|.+|+|||||.-.+....+-+++=-.++=|.-|..++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4556777776543 36789999999999999999888875443322223334444444543
No 401
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.75 E-value=0.21 Score=55.58 Aligned_cols=85 Identities=21% Similarity=0.173 Sum_probs=48.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-cccHHHHHHHHHHHHcCC-------CCCCCChH-----H
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE-LFDEFRIARAIIEALTGS-------ASNFGEFQ-----S 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 271 (955)
..++|+|..|+|||||++.+..... . +..+.+.+.+ .-.+.++..+.+..-... ..+..... .
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4799999999999999999887422 1 2222233333 334444544443332111 11221111 1
Q ss_pred HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..-.+.+++ ++++.|+++||+-
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 233355555 5899999999993
No 402
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=2.4 Score=42.39 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=96.5
Q ss_pred ccccc-hhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 178 EIVGR-EKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 178 ~~vGr-~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
+++|+ +..+++|.+.+.-+.. -+-.+.+-+.++|++|.|||-||++|+++. ..-|+.||..-
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgse--- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE--- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH---
Confidence 45654 6667777766543221 023456778999999999999999999853 34567777632
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc-CceEEEEEeCCCCccc-----------c---ChhhHHhhccC--CCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQ-RKKFLLVLDDVWNEDY-----------C---KWEPFYHCLKD--GLH 312 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~-----------~---~~~~l~~~l~~--~~~ 312 (955)
+.+..-+.. ..+...+.-.-+ .-.-+|..|.+++... + ..-.+...+.. ..+
T Consensus 217 -----lvqk~igeg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 217 -----LVQKYIGEG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -----HHHHHhhhh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 111111110 111111111111 2355677777753110 0 01112222221 234
Q ss_pred CcEEEEecCChhHHHh--h---cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 313 ESKILITTRKETVACI--M---GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 313 gs~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
.-+||..|..-++... . ..+..++.++-+++.-.++++-+.-.-. -..--++..+++++....|.--.++-+=|
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn-l~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN-LTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc-hhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 5677777755443322 1 1255678888777777777765542111 11123455555555444444444555555
Q ss_pred HH
Q 002187 388 CL 389 (955)
Q Consensus 388 ~~ 389 (955)
++
T Consensus 365 gm 366 (404)
T KOG0728|consen 365 GM 366 (404)
T ss_pred hH
Confidence 54
No 403
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.71 E-value=0.14 Score=54.05 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL 245 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 245 (955)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 3567999999999999999988777 45556888999998874
No 404
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.71 E-value=1.1 Score=47.31 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhh-cCcceEeCCCC
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIM-GSTNIISINVL 340 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~~~~~~l~~L 340 (955)
++.-++|+|++.....+.+..+...+-.-..++.+|++|.+ ..+...+ .-...+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45558899999887777888888888776667776666655 4454333 33556666665
No 405
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.70 E-value=0.32 Score=48.54 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=27.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccC--------CceEEEEeCCcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKF--------EKRMWICVSELF 246 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~ 246 (955)
++.|+|.+|+||||++..+....-....| ..++|++.....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 88899999999999998887754332223 257788777653
No 406
>PRK15453 phosphoribulokinase; Provisional
Probab=93.69 E-value=0.36 Score=50.19 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=43.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc--cHHHHHHHHHH--HH--cCCC--CCCCChHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF--DEFRIARAIIE--AL--TGSA--SNFGEFQSLMQ 274 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~--~l--~~~~--~~~~~~~~~~~ 274 (955)
...+|+|.|.+|+||||+|+.+.+ ..+..=...+.++...-. +....-..+.. .- +.+. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 457999999999999999999886 222111123344333222 22222222211 11 1122 45567777887
Q ss_pred HHHHHhcC
Q 002187 275 HIQECVQR 282 (955)
Q Consensus 275 ~l~~~l~~ 282 (955)
.++.+.++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 78776654
No 407
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.68 E-value=0.037 Score=49.23 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 002187 207 ISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~ 227 (955)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998884
No 408
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.68 E-value=0.22 Score=55.35 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=51.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-HHHHHHHHHHHHcCC-------CCCCCCh-----HH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD-EFRIARAIIEALTGS-------ASNFGEF-----QS 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~~ 271 (955)
..++|+|..|+|||||++.+++.. ..+.++.+-+++... +.++...++..-... ..+.... ..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 379999999999999999998732 225566666766543 344555543331111 1111111 12
Q ss_pred HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..-.+.+++ ++++.|+++||+-
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChH
Confidence 223355555 5899999999993
No 409
>PRK00625 shikimate kinase; Provisional
Probab=93.65 E-value=0.047 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 410
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.65 E-value=0.31 Score=50.07 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.++.|.|..|.||||+|.+++... .++. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3489999999999999986655432 2222 3456776433 445666665
No 411
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.64 E-value=0.26 Score=50.87 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL 245 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 245 (955)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 44689999999999999998766521 2 23356788887543
No 412
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=0.008 Score=57.88 Aligned_cols=68 Identities=22% Similarity=0.455 Sum_probs=39.4
Q ss_pred CCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCC-CCCCCCCCcCeEEEecCCCccc
Q 002187 864 AFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALP-DHLLQKTTLQRLSIFSCPILKK 935 (955)
Q Consensus 864 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~ 935 (955)
.+++++.|.+.+|..+.+|..... -+-.|+|+.|+|++|+.+++-- .++..+++|+.|.|++.|.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 456666666666666666665331 1246677777777776665321 2344566666666666654433
No 413
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.60 E-value=0.003 Score=61.72 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=66.5
Q ss_pred hcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcE
Q 002187 586 FDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMH 665 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~ 665 (955)
+..++...+||++.+.+..+-..++.++.|..|+++.|. +..+|+.++.+..+..+++..|. .+..|.+..+++.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 566777788888888877777777778888888888777 88888888888888888887776 7778888888888888
Q ss_pred eeCCCC
Q 002187 666 LENDQT 671 (955)
Q Consensus 666 L~l~~~ 671 (955)
++..++
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 887766
No 414
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.60 E-value=0.057 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+..+|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999986
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.59 E-value=0.33 Score=50.96 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC-
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA- 263 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~- 263 (955)
..+.++..|... +...-++|+|..|.|||||.+.+.... . .....+++.--.-... +-..++......-.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecc-hhHHHHHHHhccccc
Confidence 345555555432 245679999999999999999999842 2 2233444421111000 01122222221100
Q ss_pred -------CCCCChHHHHHHHHHHhc-CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHh
Q 002187 264 -------SNFGEFQSLMQHIQECVQ-RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACI 328 (955)
Q Consensus 264 -------~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 328 (955)
.-..+.... .-+...+. -.+=++++|.+-. .+.+..+...+. .|..||+||-...+...
T Consensus 168 ~~~~~r~~v~~~~~k~-~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKA-EGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchHH-HHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 000111111 12222222 4677999999843 234555555543 46789999987665443
No 416
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=1.7 Score=44.83 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=61.0
Q ss_pred CccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
+++-|-+...+.+.+...-+-. .....-+-|.++|++|.||+-||++|+.... . -|.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH-----
Confidence 3567888888887776543211 1233467889999999999999999998432 2 23444442
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhc-CceEEEEEeCCCC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQ-RKKFLLVLDDVWN 294 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~ 294 (955)
++++...+ +.+.++..|.+.-+ .|.-+|.+|.++.
T Consensus 201 ---DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 22222221 22456666665554 6888999999853
No 417
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.57 E-value=0.4 Score=49.91 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=35.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEA 258 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 258 (955)
-.++.|.|.+|+|||++|.+++.+.- ..+=..++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 35889999999999999988776432 22123567887665 455666666544
No 418
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.15 Score=48.98 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=60.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc--HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD--EFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
.+++|+|..|.|||||++.+.... ......+++....... ... ....+.... .....+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 489999999999999999998842 2344555554221111 111 111111100 011122233335555556
Q ss_pred ceEEEEEeCCCCc-cccChhhHHhhccCC-CCCcEEEEecCChhHHHh
Q 002187 283 KKFLLVLDDVWNE-DYCKWEPFYHCLKDG-LHESKILITTRKETVACI 328 (955)
Q Consensus 283 k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 328 (955)
..-++++|+.-.. +......+...+... ..+.-++++|........
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6778999987431 122233333333321 124668888877665544
No 419
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.53 E-value=0.2 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcch
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~ 228 (955)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998743
No 420
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.50 E-value=0.17 Score=52.17 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=43.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc--HHHHHHHHHHHH----cCCC--CCCCChHHHHHHHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD--EFRIARAIIEAL----TGSA--SNFGEFQSLMQHIQ 277 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 277 (955)
+|+|.|..|+||||+|+.+.+.. +..=..++.++...-+. -...-..+..+. .-+. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999888732 22111234444332222 112211222221 1222 45667788888888
Q ss_pred HHhcCce
Q 002187 278 ECVQRKK 284 (955)
Q Consensus 278 ~~l~~k~ 284 (955)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8777653
No 421
>PRK04040 adenylate kinase; Provisional
Probab=93.50 E-value=0.058 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999883
No 422
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.48 E-value=0.28 Score=54.70 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=50.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCC-------CCCCCChHH-----
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGS-------ASNFGEFQS----- 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 271 (955)
..++|+|..|+|||||.+.+.+.. +.+..+++.+.+. ..+.+++.+....=... ..+......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 388999999999999999998742 3444566666553 34445555443210000 111111111
Q ss_pred HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..-.+.+++ ++++.||++||+-
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCHH
Confidence 223355555 5899999999993
No 423
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.48 E-value=0.69 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|+.|.||||||+.+.-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eEEEECCCCccHHHHHHHHHc
Confidence 899999999999999999865
No 424
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.47 E-value=1.5 Score=45.60 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
.+.|+|-... .++..++..... .-+.+.|+|+.|+|||+-++.+++.. ...+-+..+..++...+...+
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k----~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASK----TGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILII 139 (297)
T ss_pred cccccccchh-HhHhhhhhhhhh----cCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHH
Confidence 3456665532 334444432221 22378899999999999999999831 223444567777777776666
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccC
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKD 309 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~ 309 (955)
......... ....+....+...+++..-+|+.|+...-.....+.++.....
T Consensus 140 ~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 140 CAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 665544322 2334455566677788888999999877655666666654433
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.47 E-value=0.11 Score=51.57 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
.|+|.|-||+||||+|..+.... ..++=..+.=|++..+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCceEEEEeCCCCCCh
Confidence 58999999999999998855532 2222123445666666554
No 426
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.39 E-value=0.59 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 427
>PF13479 AAA_24: AAA domain
Probab=93.39 E-value=0.25 Score=50.19 Aligned_cols=20 Identities=45% Similarity=0.414 Sum_probs=18.0
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFA 224 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v 224 (955)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46889999999999999876
No 428
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.64 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999999874
No 429
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.38 E-value=0.54 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|.|..|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 430
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.37 E-value=0.17 Score=52.14 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCC---------------CCC--
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGS---------------ASN-- 265 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~-- 265 (955)
.-+++.|.|.+|+|||+||.++... ..+..=+.++||+..+.+ ..+.+.+- .++.+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 4559999999999999999775542 222213457888876654 33333322 22210 000
Q ss_pred ---CCChHHHHHHHHHHhcC-ceEEEEEeCC
Q 002187 266 ---FGEFQSLMQHIQECVQR-KKFLLVLDDV 292 (955)
Q Consensus 266 ---~~~~~~~~~~l~~~l~~-k~~LlVlDdv 292 (955)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23456666666666553 3457788876
No 431
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.37 E-value=0.42 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 69999999999999999998763
No 432
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.34 E-value=0.46 Score=56.03 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=60.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCcccHHHHHHHHHHHHcCCCCC---CCChHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVSELFDEFRIARAIIEALTGSASN---FGEFQSLMQHIQE 278 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 278 (955)
++..|.|.+|.||||++..+... ..... ...+.+.....--...+...+...+..-... ......-...+++
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 48889999999999999888773 22211 2356666555544444444443322211000 0000111233444
Q ss_pred HhcC------------ce---EEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 279 CVQR------------KK---FLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 279 ~l~~------------k~---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
.|.- .. =+||+|...-.+......+...++ +++|+|+---..
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 4421 11 289999985444334444555554 468888766443
No 433
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.30 E-value=0.37 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999875
No 434
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.29 E-value=0.051 Score=53.48 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 435
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.26 E-value=0.051 Score=54.68 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 436
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.26 E-value=0.18 Score=58.31 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|....++++.+.+..-.. ...-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999888888887753322 2346889999999999999999973
No 437
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.25 E-value=0.25 Score=55.61 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=54.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCC-------CCCCCCh-----HHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGS-------ASNFGEF-----QSL 272 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~ 272 (955)
-++|+|.+|+|||||+..+.+... +.+-+.++++-+.+.. .+.++...+...-... ..+.... ...
T Consensus 145 R~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 145 KTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 689999999999999988887533 2355777788777654 3455555554321110 1122111 223
Q ss_pred HHHHHHHh---cCceEEEEEeCC
Q 002187 273 MQHIQECV---QRKKFLLVLDDV 292 (955)
Q Consensus 273 ~~~l~~~l---~~k~~LlVlDdv 292 (955)
.-.+.+++ ++++.|+++|++
T Consensus 224 a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccc
Confidence 34455666 389999999999
No 438
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.24 E-value=0.091 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5669999999999999999999874
No 439
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.23 E-value=0.22 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 002187 207 ISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~ 227 (955)
|.++|.+|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 440
>PRK05973 replicative DNA helicase; Provisional
Probab=93.19 E-value=0.37 Score=49.28 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.++.|.|.+|+|||++|.++.... ..+=..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHHH
Confidence 3488999999999999998876632 222345677766654 34444443
No 441
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.19 E-value=0.13 Score=63.51 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCcc----cHH--HHHHHHHHHHcCCCCCCCChHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVSELF----DEF--RIARAIIEALTGSASNFGEFQSLM 273 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~ 273 (955)
...-+.|+|.+|.||||+.+.++-.. ..+.+ +..+++.+.... ... .+..-+...+..... ..+..
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~-~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~ 295 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWL-AQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLI 295 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHh-ccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhh
Confidence 34478999999999999998776532 12232 334455443111 111 122222222222211 11222
Q ss_pred HHHHHHhcCceEEEEEeCCCCccccChh----hHHhhccCCCCCcEEEEecCChhHHHhhcCcceEeCCCCChhhHH
Q 002187 274 QHIQECVQRKKFLLVLDDVWNEDYCKWE----PFYHCLKDGLHESKILITTRKETVACIMGSTNIISINVLSEMGCW 346 (955)
Q Consensus 274 ~~l~~~l~~k~~LlVlDdvw~~~~~~~~----~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 346 (955)
....+.++..++++.+|.++......-. .+...+ ..-+.++||+|+|....-........+++..+.++.-.
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 2236788899999999998653221111 122222 23357899999987654444333445566666655544
No 442
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.18 E-value=0.11 Score=48.67 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=27.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
++|.|+|..|+|||||++.+.+... ++.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999999532 24455454555554
No 443
>PLN02348 phosphoribulokinase
Probab=93.17 E-value=0.4 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+...+|+|.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999883
No 444
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.12 E-value=0.38 Score=49.99 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhh--hccCCceEEEEeCCcc-cHHHHHHHHHHHHcCC-------CCCCCCh-----H
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDV--KKKFEKRMWICVSELF-DEFRIARAIIEALTGS-------ASNFGEF-----Q 270 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 270 (955)
.++|.|-.|+|||+|+..+.++..+ +++-+.++++-+.+.. .+.++...+...=... ..+.... .
T Consensus 71 R~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~ 150 (276)
T cd01135 71 KIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITP 150 (276)
T ss_pred EEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHH
Confidence 6899999999999999988875331 1234678888888764 3455555444321111 1111111 1
Q ss_pred HHHHHHHHHhc---CceEEEEEeCCC
Q 002187 271 SLMQHIQECVQ---RKKFLLVLDDVW 293 (955)
Q Consensus 271 ~~~~~l~~~l~---~k~~LlVlDdvw 293 (955)
...-.+.++++ +++.|+++||+-
T Consensus 151 ~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 151 RMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcChh
Confidence 22334555553 789999999993
No 445
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.10 E-value=0.16 Score=45.62 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=34.5
Q ss_pred ccccchhHHHHHHHHHhcCC-CCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 178 EIVGREKEKKELVNRLLCES-SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|..-..+.|++.+.+-- .+..++.-|++.+|..|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 56776655555555543221 113457789999999999999999888875
No 446
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.09 E-value=0.68 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999874
No 447
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.08 E-value=0.086 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 67999999999999999988776
No 448
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.05 E-value=0.069 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
++.|+|+.|+||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998774
No 449
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.02 E-value=0.6 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.++.-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999874
No 450
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=1.5 Score=51.25 Aligned_cols=53 Identities=25% Similarity=0.159 Sum_probs=38.1
Q ss_pred cccchhHHHHHHHHHhcCCCCC---CCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc
Q 002187 179 IVGREKEKKELVNRLLCESSKE---QKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK 233 (955)
Q Consensus 179 ~vGr~~~~~~i~~~L~~~~~~~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~ 233 (955)
..+++.-+..+.+.+...-..+ -....++.++|.+|+||||+++.|+. ...-|
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas--~lg~h 458 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS--ELGLH 458 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH--HhCCc
Confidence 4667777777777776443321 12456888999999999999999998 44444
No 451
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.02 E-value=2.7 Score=44.45 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=47.7
Q ss_pred CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhhcC-cceEeCCCCChhhHHHHhHh
Q 002187 282 RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIMGS-TNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~-~~~~~l~~L~~~~~~~lf~~ 351 (955)
+++-++|+|+++......+..+...+-.-..++.+|++|.+ ..+...+.+ ...+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 45668999999887777888888888876666777776655 445544433 56777766 66666665543
No 452
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.01 E-value=0.56 Score=47.28 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=34.0
Q ss_pred HHHHhcCceEEEEEeCCCCc-cccChh-hHHhhccCCC-C-CcEEEEecCChhHHHhhcCcceEeC
Q 002187 276 IQECVQRKKFLLVLDDVWNE-DYCKWE-PFYHCLKDGL-H-ESKILITTRKETVACIMGSTNIISI 337 (955)
Q Consensus 276 l~~~l~~k~~LlVlDdvw~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtr~~~v~~~~~~~~~~~l 337 (955)
+...+..+.-++++|+.-.. +....+ .+...+..-. . |..||++|.+...... .+.++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 45566677889999997432 222233 4444443322 2 5568888888766543 2344444
No 453
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.00 E-value=0.073 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999999983
No 454
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.00 E-value=0.14 Score=52.86 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 187 KELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 187 ~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.+++..+.... ++..||+|.|.+|+||+||.-.+.....-+++=-.++=|+-|..++--.++-+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45666665433 47779999999999999999888775544444334555666666665554444
No 455
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.00 E-value=0.059 Score=53.44 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 456
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.98 E-value=0.52 Score=47.01 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 457
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.98 E-value=0.12 Score=51.37 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=57.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC---CCCCChHHHHHHHHHHhcC
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA---SNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~l~~ 282 (955)
++.|+|..|.||||+.+.+.-.... .+--+ +|.+.. ..+ .....++..++... ........-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~--~v~a~~-~~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGS--FVPAES-AEL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHhCC--Ceeehh-eEe-cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 4679999999999999998843221 11111 222111 000 00001111111110 0111222222234444444
Q ss_pred --ceEEEEEeCCCCcc-ccCh----hhHHhhccCCCCCcEEEEecCChhHHHhhc
Q 002187 283 --KKFLLVLDDVWNED-YCKW----EPFYHCLKDGLHESKILITTRKETVACIMG 330 (955)
Q Consensus 283 --k~~LlVlDdvw~~~-~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 330 (955)
++-|+++|..-... ...- ..+...+.. ..++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 78899999985321 1111 122222322 23678999999887776553
No 458
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.96 E-value=0.17 Score=50.14 Aligned_cols=42 Identities=36% Similarity=0.402 Sum_probs=31.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
++++|.+..+..+.-...+. .-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 47889988887776666533 3589999999999999998865
No 459
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.89 E-value=0.39 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+..+|.|+|.+|+|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999999883
No 460
>PRK08149 ATP synthase SpaL; Validated
Probab=92.84 E-value=0.27 Score=54.80 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=50.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCC-------CCCCCCh-----HH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGS-------ASNFGEF-----QS 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~ 271 (955)
..++|+|..|+|||||++.+++.. .-+.++...+... .++.++........... ..+.... ..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 378999999999999999998742 2233333444433 34445555554432211 1122111 12
Q ss_pred HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
....+.+++ ++|+.||++||+-
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchH
Confidence 333445555 5899999999993
No 461
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.82 E-value=0.22 Score=54.47 Aligned_cols=64 Identities=22% Similarity=0.158 Sum_probs=46.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.++|+++....+...+.... -+.+.|.+|+|||+||+.++.. .. -..++|.+.......+++-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCc
Confidence 48898888888877776544 4889999999999999999983 33 23456666666666555433
No 462
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.81 E-value=0.18 Score=54.13 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
.+++.+.|.||+||||+|.+.+- ........++=|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 46899999999999999987554 3333334466666666555554443
No 463
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.78 E-value=0.48 Score=52.96 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=51.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-HHHHHHHHHHHHcCC-------CCCCCCh-----HH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD-EFRIARAIIEALTGS-------ASNFGEF-----QS 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~~ 271 (955)
..++|+|..|+|||||++.+++... .+..+.+-+++... +.++..+.+..-+.. ..+.... ..
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 4789999999999999999987432 24555666666543 334444443322111 1121111 12
Q ss_pred HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..-.+.+++ ++++.|+++||+-
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcH
Confidence 233355555 5899999999993
No 464
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.77 E-value=0.16 Score=57.50 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceE-EEEeCCcccHHHHHHHHHHHHc----CC
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRM-WICVSELFDEFRIARAIIEALT----GS 262 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~----~~ 262 (955)
++++.|..-. .=.-..|+|.+|+|||||++.+.+... ..+-++.+ .+-|.+..... .+|...+. ..
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEE
Confidence 4555554322 223688999999999999999998421 12334433 44455543322 22223331 11
Q ss_pred CCCCCC-----hHHHHHHHHHHh--cCceEEEEEeCC
Q 002187 263 ASNFGE-----FQSLMQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 263 ~~~~~~-----~~~~~~~l~~~l--~~k~~LlVlDdv 292 (955)
..+... ...+.-.+.+++ +++.+||++|++
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 112111 122333455555 689999999999
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.76 E-value=0.65 Score=53.68 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.-.++.|.|.+|+|||||+.++... ...+=+.+++++..+ +..++.+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHH
Confidence 4568999999999999999887763 223334567777655 34444444
No 466
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.68 E-value=0.37 Score=53.95 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=54.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-HHHHHHHHHHHHcCC-------CCCCCCh-----HHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD-EFRIARAIIEALTGS-------ASNFGEF-----QSL 272 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~~~ 272 (955)
-++|.|.+|+|||+|+..+.+... +.+-+.++++-+.+... +.++...+...=... ..+.... ...
T Consensus 140 r~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 140 KAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred EEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999998877532 23346788888877653 445555544321111 1122111 123
Q ss_pred HHHHHHHhc---CceEEEEEeCCC
Q 002187 273 MQHIQECVQ---RKKFLLVLDDVW 293 (955)
Q Consensus 273 ~~~l~~~l~---~k~~LlVlDdvw 293 (955)
.-.+.++++ +++.|+++||+-
T Consensus 219 a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecChH
Confidence 344566654 689999999993
No 467
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.66 E-value=0.43 Score=52.40 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=59.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCce
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKK 284 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 284 (955)
..|.|.|..|.||||+.+.+.+ .+..+...+++.- .+.... ........+.....+ .+.......++..|+...
T Consensus 123 g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~E~--~~~~~~~~i~q~evg-~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPIEY--VHRNKRSLINQREVG-LDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCChhh--hccCccceEEccccC-CCCcCHHHHHHHhhccCC
Confidence 4899999999999999999887 3333444555542 221111 000000000000001 111234556777788888
Q ss_pred EEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHH
Q 002187 285 FLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVA 326 (955)
Q Consensus 285 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 326 (955)
=.|++|.+.+ .+.+...... ...|..|+.|.-...+.
T Consensus 197 d~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRD--LETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 8999999953 2334433332 23355566666554444
No 468
>PRK13947 shikimate kinase; Provisional
Probab=92.66 E-value=0.077 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3889999999999999999883
No 469
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.65 E-value=0.075 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998873
No 470
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.63 E-value=0.52 Score=50.69 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=48.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC-cccHHHHHHHHHHHHcC-------CCCCCCCh-----HH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE-LFDEFRIARAIIEALTG-------SASNFGEF-----QS 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~ 271 (955)
..++|+|..|.|||||.+.+.+... -+..+..-+.. .-++.++.......-.. ...+.... ..
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 3789999999999999999988422 23334444443 23444444444433211 11122111 12
Q ss_pred HHHHHHHHh--cCceEEEEEeCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdv 292 (955)
..-.+.+++ ++|..||++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 223344444 589999999998
No 471
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.81 Score=46.02 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=55.6
Q ss_pred CccccchhHHHHHHHHHhcCC----C---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCES----S---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~----~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
+++=|=.++++++.+....+- . -+-+..+-|..+|++|.|||-+|++|+| +....| +.|-.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irvig----- 244 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRVIG----- 244 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eeehh-----
Confidence 355666777777766553221 0 0223566788999999999999999999 444333 22211
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC-ceEEEEEeCCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQR-KKFLLVLDDVW 293 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw 293 (955)
.++.+..-+ +...++..+.+.-+. |-++|.||.++
T Consensus 245 ---selvqkyvg------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 ---SELVQKYVG------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred ---HHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 122222211 113344444444444 56888999874
No 472
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.58 E-value=0.43 Score=54.31 Aligned_cols=82 Identities=22% Similarity=0.243 Sum_probs=46.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-.++.|.|.+|+|||||+.+++... ...-..++|++..+.+ ..+.. -++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 34589999999999999999888742 2222357788765533 23222 2344443211 1123344433332
Q ss_pred HHhcCceEEEEEeCC
Q 002187 278 ECVQRKKFLLVLDDV 292 (955)
Q Consensus 278 ~~l~~k~~LlVlDdv 292 (955)
+ .+.-+||+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 24447788877
No 473
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.57 E-value=0.31 Score=49.70 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 474
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.55 E-value=0.3 Score=57.79 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=49.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc-cCCceEEEEeCCcccHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-KFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
-++++|.++.++.+...+.... -+.++|+.|+||||+|+.+.+. +.. .|...+++.- ...+...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--------~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--------NVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--------CEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHH
Confidence 3578999988888777775321 4559999999999999999983 333 3333333322 22345556777
Q ss_pred HHHHHcC
Q 002187 255 IIEALTG 261 (955)
Q Consensus 255 i~~~l~~ 261 (955)
+..+++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 7766653
No 475
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.55 E-value=0.085 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999873
No 476
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.54 E-value=1.3 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.+..-
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 38999999999999999999874
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.52 E-value=0.092 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
++++|+|+.|+||||||+.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999998
No 478
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.52 E-value=0.096 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||++.+..
T Consensus 35 ~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 899999999999999999986
No 479
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.51 E-value=0.16 Score=48.38 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcch
Q 002187 184 KEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 184 ~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
+.++++.+.|. + +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34677888883 2 589999999999999999998853
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.50 E-value=0.75 Score=49.65 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcch
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
...++.++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998743
No 481
>PRK05922 type III secretion system ATPase; Validated
Probab=92.49 E-value=0.63 Score=51.94 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=48.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCC-------CCCCCCh-----HHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGS-------ASNFGEF-----QSL 272 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~ 272 (955)
.++|+|..|+|||||.+.+.+.. ..+..+.+.+++. ..+.+.+.+........ ..+.... ...
T Consensus 159 rigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~ 234 (434)
T PRK05922 159 RIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234 (434)
T ss_pred EEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHH
Confidence 68999999999999999998742 2234444444443 23344444443332211 1111111 122
Q ss_pred HHHHHHHh--cCceEEEEEeCCC
Q 002187 273 MQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 273 ~~~l~~~l--~~k~~LlVlDdvw 293 (955)
.-.+.+++ ++++.|+++||+-
T Consensus 235 a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 235 AMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHcCCCEEEeccchh
Confidence 33455555 5899999999993
No 482
>PRK13949 shikimate kinase; Provisional
Probab=92.49 E-value=0.086 Score=51.30 Aligned_cols=22 Identities=45% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-|.|+|+.|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 483
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.48 E-value=0.078 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
||.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 484
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.47 E-value=0.54 Score=55.26 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=56.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcccHHHHHHHHHHHHcCCCCC---CCChHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELFDEFRIARAIIEALTGSASN---FGEFQSLMQHIQEC 279 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 279 (955)
++..|.|.+|.||||++..+..-......- ..++-+.+...--...+...+-.....-... ......-...+++.
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrl 240 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRL 240 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhh
Confidence 488999999999999998887632111111 1345555544433333333333222100000 00000001222333
Q ss_pred hcC-----------ce----EEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC
Q 002187 280 VQR-----------KK----FLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 280 l~~-----------k~----~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
|.- .+ =+||+|.+.-.+......+...++ +++|+|+.--.
T Consensus 241 Lg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~ 295 (586)
T TIGR01447 241 LGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDK 295 (586)
T ss_pred hcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcC---CCCEEEEECCh
Confidence 211 11 189999986544444555555554 46788876543
No 485
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.44 E-value=0.12 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+..||...|.+|.||||+|.+++..
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999983
No 486
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.44 E-value=0.84 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 487
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.41 E-value=0.098 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 002187 206 IISLVGMGGIGKTTLAQFAY 225 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~ 225 (955)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998877
No 488
>COG4240 Predicted kinase [General function prediction only]
Probab=92.41 E-value=0.52 Score=46.46 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHc-----CCCCCCCChHHHHHH
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALT-----GSASNFGEFQSLMQH 275 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 275 (955)
.++.-+++|.|.-|.||||++..+++....++- +.++..+...-+-...-...++++.. ...++..|..-....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 346789999999999999999999995443332 45666665554444444444555532 223456677777788
Q ss_pred HHHHhcCceE
Q 002187 276 IQECVQRKKF 285 (955)
Q Consensus 276 l~~~l~~k~~ 285 (955)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 8888777643
No 489
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.40 E-value=0.3 Score=56.50 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|....++++.+.+..-.. .-.-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4599999888888887753321 2336889999999999999999884
No 490
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.37 E-value=0.096 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhcch
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~ 228 (955)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 491
>PRK15115 response regulator GlrR; Provisional
Probab=92.37 E-value=0.33 Score=55.90 Aligned_cols=46 Identities=26% Similarity=0.262 Sum_probs=33.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.++|....+.++.+....-.. .-..|.|.|.+|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHh
Confidence 578887777776665543221 2235779999999999999999873
No 492
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.36 E-value=0.54 Score=48.93 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=48.2
Q ss_pred EEEEEcCCCChHHHHH-HHHhcchhhhccCCce-EEEEeCCcc-cHHHHHHHHHHHHcCC-------CCCCCChHH----
Q 002187 206 IISLVGMGGIGKTTLA-QFAYNNVDVKKKFEKR-MWICVSELF-DEFRIARAIIEALTGS-------ASNFGEFQS---- 271 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 271 (955)
-++|.|..|+|||+|| ..+.+. .+-+.+ +++-+.+.. .+.++...+.+.-... ..+......
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 6899999999999996 666652 123444 666676654 3445555544321110 111111111
Q ss_pred -HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 -LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 -~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..-.+.+++ +++..|||+||+-
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChH
Confidence 122344444 5899999999993
No 493
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.32 E-value=0.32 Score=58.68 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=70.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
+.++|....+.++.+.+..-.. ...-|.|+|..|+||+++|+.+.+.. ...-..-+.|+++..+. ..+..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~~-~~~~~--- 394 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYPD-EALAE--- 394 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCCh-HHHHH---
Confidence 4688998888888777754332 22247899999999999999998732 11112234455554332 22222
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC----C-------CcEEEEecCC
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL----H-------ESKILITTRK 322 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~-------gs~iivTtr~ 322 (955)
.+.+......... ..-..-....=.|+||++..-.......+...+..+. . ..|||.||..
T Consensus 395 -elfg~~~~~~~~~----~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 395 -EFLGSDRTDSENG----RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred -HhcCCCCcCccCC----CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 2222110000000 0000001123358999997655555566666664432 1 3467777754
No 494
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.31 E-value=0.37 Score=48.13 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcc
Q 002187 207 ISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~ 227 (955)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 495
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.26 E-value=0.63 Score=52.34 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=51.7
Q ss_pred EEEEEcCCCChHHHHH-HHHhcchhhh-----ccCCceEEEEeCCcccHHHHHHHHHHHHcC-C-------CCCCCChH-
Q 002187 206 IISLVGMGGIGKTTLA-QFAYNNVDVK-----KKFEKRMWICVSELFDEFRIARAIIEALTG-S-------ASNFGEFQ- 270 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~-------~~~~~~~~- 270 (955)
-++|.|-.|+|||+|| -.+.+...+. ++-+.++++-+++......-+.+.+++-+. . ..+.....
T Consensus 191 R~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r 270 (574)
T PTZ00185 191 RELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQ 270 (574)
T ss_pred EEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHH
Confidence 6899999999999997 6667743221 233567888888865443333333333331 1 11111111
Q ss_pred ----HHHHHHHHHh--cCceEEEEEeCCC
Q 002187 271 ----SLMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 271 ----~~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
-..-.+.+++ +++..|||+||+-
T Consensus 271 ~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 271 YLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1222344444 5899999999994
No 496
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.22 E-value=0.24 Score=58.47 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=54.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-++++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+|+..+|..-+ ..+...+++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHH
Confidence 357899998888888777432 258899999999999999998742 22345778887653 33666777777
Q ss_pred HHHHc
Q 002187 256 IEALT 260 (955)
Q Consensus 256 ~~~l~ 260 (955)
..+++
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 76554
No 497
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.22 E-value=0.62 Score=52.01 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=51.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc-cHHHHHHHHHHHHcCC-------CCCCCChH-----H
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF-DEFRIARAIIEALTGS-------ASNFGEFQ-----S 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 271 (955)
..++|.|..|+|||||.+.+++.. .-+.++++-+.+.. .+.++....+..-+.. ..+..... .
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 489999999999999999999843 23567777777654 3344333322221110 11111111 1
Q ss_pred HHHHHHHHh--cCceEEEEEeCCC
Q 002187 272 LMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 272 ~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
..-.+.+++ ++++.|+++||+-
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 122344555 5899999999993
No 498
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.21 E-value=0.58 Score=45.37 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=44.5
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC--ce
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQR--KK 284 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~ 284 (955)
+.|.|..|+|||++|.++... ....++++.-.+.++.+ ....|..........-... +....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCC
Confidence 678999999999999888752 22456777777766553 3334333222222221111 222233333321 23
Q ss_pred EEEEEeCC
Q 002187 285 FLLVLDDV 292 (955)
Q Consensus 285 ~LlVlDdv 292 (955)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999987
No 499
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.20 E-value=0.7 Score=45.75 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...++.|.|.+|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999873
No 500
>PF13245 AAA_19: Part of AAA domain
Probab=92.18 E-value=0.28 Score=40.24 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=16.7
Q ss_pred EEEEEEcCCCChHHHHH-HHHhc
Q 002187 205 CIISLVGMGGIGKTTLA-QFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa-~~v~~ 226 (955)
+++.|.|.+|.|||+++ +.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47888999999999555 55444
Done!