Query 002187
Match_columns 955
No_of_seqs 517 out of 4383
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.3E-51 2.8E-55 475.9 22.7 316 180-521 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.3E-40 1.1E-44 386.8 21.7 286 178-513 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-38 7.2E-43 412.7 25.5 312 174-519 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1E-34 3.5E-39 345.6 27.6 306 175-516 122-449 (591)
5 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.4E-30 272.5 16.1 348 539-933 448-840 (876)
6 4eco_A Uncharacterized protein 99.9 1.2E-25 3.9E-30 268.8 13.4 346 539-933 206-600 (636)
7 4eco_A Uncharacterized protein 99.9 8E-26 2.7E-30 270.2 11.3 363 539-936 81-581 (636)
8 3rgz_A Protein brassinosteroid 99.9 3.2E-25 1.1E-29 271.4 14.1 379 539-953 269-766 (768)
9 4fmz_A Internalin; leucine ric 99.9 2.3E-24 7.8E-29 238.6 19.7 303 561-931 42-344 (347)
10 4ecn_A Leucine-rich repeat pro 99.9 6.4E-25 2.2E-29 266.3 14.5 321 583-937 441-822 (876)
11 3vq2_A TLR4, TOLL-like recepto 99.9 7E-24 2.4E-28 253.6 20.3 145 539-688 32-180 (606)
12 1o6v_A Internalin A; bacterial 99.9 2.4E-23 8.3E-28 239.9 22.2 325 540-932 47-387 (466)
13 3rgz_A Protein brassinosteroid 99.9 1E-24 3.5E-29 267.0 10.7 277 539-847 247-531 (768)
14 3t6q_A CD180 antigen; protein- 99.9 1.6E-23 5.4E-28 250.5 19.6 151 539-694 33-188 (606)
15 1ziw_A TOLL-like receptor 3; i 99.9 1E-23 3.4E-28 255.8 17.9 155 539-698 25-184 (680)
16 3o6n_A APL1; leucine-rich repe 99.9 1.7E-23 5.8E-28 235.5 18.4 304 561-932 43-351 (390)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1E-23 3.5E-28 252.2 17.6 367 543-932 15-436 (606)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-23 5.2E-28 245.7 18.3 126 539-673 21-150 (520)
19 2z7x_B TOLL-like receptor 1, v 99.9 2E-23 6.7E-28 244.7 18.7 143 542-697 3-150 (520)
20 1o6v_A Internalin A; bacterial 99.9 6E-23 2.1E-27 236.6 21.4 319 561-932 44-365 (466)
21 3v47_A TOLL-like receptor 5B a 99.9 2.2E-23 7.6E-28 240.0 17.7 365 539-935 30-410 (455)
22 3oja_B Anopheles plasmodium-re 99.9 4.1E-23 1.4E-27 245.4 18.0 305 561-932 49-357 (597)
23 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.9E-27 225.0 20.0 301 539-907 44-344 (347)
24 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-22 5.8E-27 249.9 23.7 279 539-841 24-373 (844)
25 3t6q_A CD180 antigen; protein- 99.9 4.8E-23 1.6E-27 246.4 18.2 351 544-932 17-461 (606)
26 2z63_A TOLL-like receptor 4, v 99.9 3.1E-23 1.1E-27 246.2 16.3 144 539-687 28-175 (570)
27 2id5_A Lingo-1, leucine rich r 99.9 1.3E-22 4.3E-27 235.0 20.0 147 544-697 16-164 (477)
28 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-23 1.1E-27 244.9 15.1 377 539-932 26-509 (549)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.5E-27 239.0 21.1 350 542-930 34-483 (562)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-22 5E-27 239.4 19.1 342 539-933 52-510 (562)
31 2z63_A TOLL-like receptor 4, v 99.9 8.2E-23 2.8E-27 242.6 14.1 128 539-671 52-187 (570)
32 3bz5_A Internalin-J, INLJ; leu 99.9 6.1E-22 2.1E-26 226.1 18.8 306 561-931 40-350 (457)
33 4fcg_A Uncharacterized protein 99.9 6.1E-22 2.1E-26 216.3 17.6 233 587-930 78-311 (328)
34 3bz5_A Internalin-J, INLJ; leu 99.9 3E-21 1E-25 220.5 22.1 307 539-913 42-355 (457)
35 3o6n_A APL1; leucine-rich repe 99.9 4.4E-22 1.5E-26 223.9 14.9 302 539-907 45-350 (390)
36 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-22 1.2E-26 235.8 13.9 193 547-754 13-210 (549)
37 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-21 6.1E-26 240.8 20.3 348 544-930 9-391 (844)
38 3oja_B Anopheles plasmodium-re 99.9 7.5E-22 2.6E-26 234.5 14.1 302 539-907 51-356 (597)
39 3v47_A TOLL-like receptor 5B a 99.9 2.9E-21 1E-25 222.2 18.1 348 545-936 16-386 (455)
40 2id5_A Lingo-1, leucine rich r 99.9 1.2E-20 4.2E-25 218.3 21.3 297 589-933 31-333 (477)
41 1ziw_A TOLL-like receptor 3; i 99.9 4.3E-21 1.5E-25 232.7 17.4 268 544-841 9-283 (680)
42 4g8a_A TOLL-like receptor 4; l 99.8 8.2E-21 2.8E-25 228.6 15.3 368 539-932 52-579 (635)
43 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-20 6.1E-25 205.7 16.4 221 590-847 54-280 (332)
44 1xku_A Decorin; proteoglycan, 99.8 1.5E-19 5E-24 198.3 19.4 290 564-930 32-329 (330)
45 1xku_A Decorin; proteoglycan, 99.8 1.5E-19 5.2E-24 198.1 18.7 294 540-907 32-330 (330)
46 1ogq_A PGIP-2, polygalacturona 99.8 5.3E-20 1.8E-24 199.6 9.5 126 563-690 50-179 (313)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-20 8.9E-25 202.1 6.5 247 539-842 50-303 (313)
48 4fcg_A Uncharacterized protein 99.8 1E-19 3.6E-24 198.5 11.2 219 562-837 80-308 (328)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-18 3.8E-23 191.4 18.9 292 590-931 33-331 (332)
50 2z80_A TOLL-like receptor 2, v 99.8 2.9E-19 1E-23 197.8 12.8 258 590-934 52-315 (353)
51 1jl5_A Outer protein YOPM; leu 99.8 7.1E-19 2.4E-23 200.6 16.1 160 539-720 11-203 (454)
52 1jl5_A Outer protein YOPM; leu 99.8 3.2E-18 1.1E-22 195.2 21.4 301 539-931 91-407 (454)
53 4g8a_A TOLL-like receptor 4; l 99.8 1E-18 3.5E-23 210.2 17.3 141 550-698 42-186 (635)
54 3g06_A SSPH2 (leucine-rich rep 99.8 6.5E-18 2.2E-22 198.4 20.5 118 779-932 179-296 (622)
55 3o53_A Protein LRIM1, AGAP0063 99.8 2.4E-19 8.1E-24 195.1 5.0 278 578-936 22-302 (317)
56 1z7x_W Ribonuclease inhibitor; 99.7 6E-20 2.1E-24 211.7 -0.7 365 539-931 3-409 (461)
57 3zyj_A Leucine-rich repeat-con 99.7 4.9E-17 1.7E-21 185.6 21.8 96 592-692 45-143 (440)
58 2z80_A TOLL-like receptor 2, v 99.7 2.8E-18 9.5E-23 189.9 11.0 267 544-841 36-312 (353)
59 3zyi_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 185.8 21.7 242 592-931 56-301 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.7 3.3E-17 1.1E-21 192.4 20.1 255 540-907 41-295 (622)
61 2z66_A Variable lymphocyte rec 99.7 1.2E-17 4.2E-22 180.8 15.1 63 777-841 146-210 (306)
62 2z66_A Variable lymphocyte rec 99.7 3.9E-18 1.3E-22 184.7 9.5 124 563-691 28-156 (306)
63 3ogk_B Coronatine-insensitive 99.7 4.4E-19 1.5E-23 211.5 1.1 304 586-931 188-524 (592)
64 3zyi_A Leucine-rich repeat-con 99.7 2.5E-17 8.6E-22 188.7 15.6 238 543-841 58-301 (452)
65 3o53_A Protein LRIM1, AGAP0063 99.7 7.6E-19 2.6E-23 191.1 2.1 275 554-910 25-300 (317)
66 3zyj_A Leucine-rich repeat-con 99.7 3.4E-17 1.2E-21 186.9 15.8 238 543-841 47-290 (440)
67 1ozn_A Reticulon 4 receptor; N 99.7 1.8E-17 6.2E-22 177.4 11.1 103 589-692 31-136 (285)
68 3oja_A Leucine-rich immune mol 99.7 4.7E-18 1.6E-22 195.8 5.0 237 587-904 31-270 (487)
69 1z7x_W Ribonuclease inhibitor; 99.7 3.7E-19 1.3E-23 205.0 -8.8 341 562-931 2-381 (461)
70 1ozn_A Reticulon 4 receptor; N 99.7 4.9E-17 1.7E-21 174.0 8.1 144 542-693 14-161 (285)
71 2p1m_B Transport inhibitor res 99.7 6.8E-18 2.3E-22 201.2 1.4 359 539-932 105-518 (594)
72 1w5s_A Origin recognition comp 99.7 1E-15 3.6E-20 173.3 18.5 304 176-492 21-372 (412)
73 3qfl_A MLA10; coiled-coil, (CC 99.6 1.4E-16 4.9E-21 141.5 7.1 81 4-88 1-83 (115)
74 1wwl_A Monocyte differentiatio 99.6 3.1E-16 1.1E-20 170.0 10.1 202 588-841 93-307 (312)
75 2qen_A Walker-type ATPase; unk 99.6 1.7E-14 5.8E-19 159.3 23.9 293 175-513 10-349 (350)
76 1h6u_A Internalin H; cell adhe 99.6 7.4E-16 2.5E-20 166.4 12.3 189 589-841 40-228 (308)
77 3oja_A Leucine-rich immune mol 99.6 2.7E-16 9.3E-21 181.1 9.3 214 562-841 33-248 (487)
78 1wwl_A Monocyte differentiatio 99.6 5E-17 1.7E-21 176.3 2.3 97 592-691 65-179 (312)
79 3ogk_B Coronatine-insensitive 99.6 1E-17 3.5E-22 199.6 -3.7 352 539-931 112-499 (592)
80 2xwt_C Thyrotropin receptor; s 99.6 4.1E-15 1.4E-19 154.4 16.3 102 811-933 134-239 (239)
81 3rfs_A Internalin B, repeat mo 99.6 3.4E-15 1.2E-19 158.3 14.9 80 588-671 39-119 (272)
82 2o6q_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 155.3 17.2 195 591-841 17-216 (270)
83 1p9a_G Platelet glycoprotein I 99.6 6.7E-15 2.3E-19 157.2 15.3 198 587-841 7-206 (290)
84 2z62_A TOLL-like receptor 4, v 99.6 6.1E-15 2.1E-19 156.8 13.1 101 590-693 28-132 (276)
85 2fna_A Conserved hypothetical 99.6 2.3E-13 7.7E-18 150.7 25.5 292 175-512 11-356 (357)
86 2ast_B S-phase kinase-associat 99.6 4.1E-16 1.4E-20 171.3 2.7 256 564-917 48-314 (336)
87 4ay9_X Follicle-stimulating ho 99.6 4.3E-14 1.5E-18 155.7 18.2 237 593-905 12-255 (350)
88 3rfs_A Internalin B, repeat mo 99.6 1.6E-14 5.4E-19 153.1 13.6 192 561-841 39-233 (272)
89 4glp_A Monocyte differentiatio 99.6 3.8E-14 1.3E-18 153.4 16.5 229 561-841 62-305 (310)
90 1p9a_G Platelet glycoprotein I 99.6 3.4E-14 1.2E-18 151.8 15.9 152 608-841 5-159 (290)
91 2ast_B S-phase kinase-associat 99.5 1.7E-15 5.8E-20 166.4 5.1 125 540-672 48-179 (336)
92 2z62_A TOLL-like receptor 4, v 99.5 1.8E-14 6E-19 153.3 11.8 129 563-696 28-160 (276)
93 2xwt_C Thyrotropin receptor; s 99.5 1.1E-14 3.7E-19 151.2 9.7 80 591-671 32-115 (239)
94 1h6u_A Internalin H; cell adhe 99.5 3.5E-14 1.2E-18 153.2 14.1 189 561-817 39-227 (308)
95 2p1m_B Transport inhibitor res 99.5 7.9E-17 2.7E-21 192.0 -8.4 131 560-693 102-243 (594)
96 2o6q_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 146.0 16.5 176 590-818 37-216 (270)
97 2ca6_A RAN GTPase-activating p 99.5 9.8E-16 3.3E-20 171.7 -3.5 215 582-841 24-285 (386)
98 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.2E-20 169.5 -1.7 246 554-841 24-314 (386)
99 1h6t_A Internalin B; cell adhe 99.5 6.7E-14 2.3E-18 149.6 10.6 79 588-671 44-122 (291)
100 2qby_B CDC6 homolog 3, cell di 99.5 1.9E-11 6.6E-16 136.6 30.4 297 176-493 19-341 (384)
101 4ay9_X Follicle-stimulating ho 99.5 1.5E-12 5.2E-17 143.3 20.5 239 616-929 12-255 (350)
102 1m9s_A Internalin B; cell inva 99.5 9.6E-14 3.3E-18 162.9 10.8 169 587-818 40-208 (605)
103 2v1u_A Cell division control p 99.5 1.7E-11 5.9E-16 137.2 28.7 310 176-505 18-367 (387)
104 1fnn_A CDC6P, cell division co 99.4 1.5E-11 5E-16 137.8 26.5 321 176-515 16-383 (389)
105 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 135.0 16.7 172 590-841 14-190 (251)
106 1h6t_A Internalin B; cell adhe 99.4 1E-12 3.4E-17 140.5 11.3 121 561-693 44-164 (291)
107 3cvr_A Invasion plasmid antige 99.4 1.8E-12 6.3E-17 150.2 13.5 175 590-841 59-241 (571)
108 4glp_A Monocyte differentiatio 99.4 1.2E-12 4.2E-17 141.5 11.0 207 588-841 62-283 (310)
109 4ezg_A Putative uncharacterize 99.4 2E-12 6.9E-17 129.5 11.7 148 539-697 44-193 (197)
110 1xeu_A Internalin C; cellular 99.4 5.4E-13 1.8E-17 140.2 7.5 166 589-841 18-183 (263)
111 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.6E-17 153.2 11.2 171 561-795 41-211 (605)
112 2qby_A CDC6 homolog 1, cell di 99.3 4.9E-11 1.7E-15 133.4 22.8 295 176-491 19-348 (386)
113 3goz_A Leucine-rich repeat-con 99.3 1.7E-13 5.7E-18 151.8 1.8 114 556-671 15-148 (362)
114 3m19_A Variable lymphocyte rec 99.3 3.4E-12 1.2E-16 133.3 11.0 150 540-695 36-189 (251)
115 3goz_A Leucine-rich repeat-con 99.3 9.8E-13 3.4E-17 145.6 5.8 242 582-841 14-295 (362)
116 4ezg_A Putative uncharacterize 99.3 4.8E-12 1.6E-16 126.7 8.4 127 561-695 42-169 (197)
117 2o6s_A Variable lymphocyte rec 99.3 6.9E-12 2.3E-16 126.9 8.9 127 540-671 29-158 (208)
118 4b8c_D Glucose-repressible alc 99.3 7E-12 2.4E-16 151.0 10.3 156 539-698 173-329 (727)
119 3e6j_A Variable lymphocyte rec 99.3 6.8E-12 2.3E-16 128.9 8.7 145 544-697 24-171 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.2 1.3E-11 4.4E-16 125.8 9.5 149 543-698 15-166 (220)
121 2v9t_B SLIT homolog 2 protein 99.2 9.5E-12 3.3E-16 126.8 8.1 145 544-697 16-164 (220)
122 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.8E-15 121.3 16.5 197 177-390 23-231 (250)
123 3cvr_A Invasion plasmid antige 99.2 1.6E-11 5.3E-16 142.4 10.8 164 590-821 80-244 (571)
124 2v9t_B SLIT homolog 2 protein 99.2 5.4E-11 1.9E-15 121.2 13.7 81 593-678 14-96 (220)
125 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 120.3 8.0 130 562-697 23-159 (168)
126 1xeu_A Internalin C; cellular 99.2 5.3E-11 1.8E-15 124.9 13.1 146 539-699 41-186 (263)
127 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4E-16 120.4 7.0 133 539-680 24-165 (168)
128 1a9n_A U2A', U2A'; complex (nu 99.2 1.6E-11 5.5E-16 120.4 7.8 128 561-696 17-151 (176)
129 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.8E-16 117.9 5.6 125 562-692 16-147 (149)
130 3e6j_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 123.2 9.7 129 539-672 40-170 (229)
131 2o6s_A Variable lymphocyte rec 99.1 7.1E-11 2.4E-15 119.3 9.5 142 545-695 13-158 (208)
132 2je0_A Acidic leucine-rich nuc 99.1 2.7E-11 9.3E-16 115.1 5.7 123 539-669 17-148 (149)
133 2xot_A Amphoterin-induced prot 99.1 8.4E-11 2.9E-15 129.8 10.0 100 591-692 40-143 (361)
134 2chg_A Replication factor C sm 99.1 9.3E-10 3.2E-14 112.5 16.9 185 177-387 17-204 (226)
135 2v70_A SLIT-2, SLIT homolog 2 99.1 8.5E-11 2.9E-15 119.7 8.8 129 539-672 32-164 (220)
136 3sb4_A Hypothetical leucine ri 99.1 5.4E-10 1.8E-14 121.7 15.6 287 561-926 23-327 (329)
137 1dce_A Protein (RAB geranylger 99.1 1.8E-10 6.1E-15 134.3 9.9 107 565-680 443-551 (567)
138 2xot_A Amphoterin-induced prot 99.1 6.8E-11 2.3E-15 130.6 5.8 106 588-696 62-174 (361)
139 1a9n_A U2A', U2A'; complex (nu 99.1 1.2E-10 4.2E-15 114.0 6.9 126 539-672 19-151 (176)
140 4b8c_D Glucose-repressible alc 99.1 2.7E-11 9.1E-16 146.0 2.1 120 556-681 217-336 (727)
141 1dce_A Protein (RAB geranylger 99.1 1.9E-10 6.4E-15 134.1 8.9 104 591-699 442-547 (567)
142 1w8a_A SLIT protein; signaling 99.0 1.3E-09 4.3E-14 108.4 10.7 101 591-693 30-134 (192)
143 1sxj_B Activator 1 37 kDa subu 99.0 3.3E-09 1.1E-13 115.2 14.0 187 177-389 21-212 (323)
144 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.8E-14 108.1 9.9 100 591-693 32-134 (193)
145 1hqc_A RUVB; extended AAA-ATPa 98.9 1.3E-09 4.5E-14 118.5 9.7 275 177-490 12-324 (324)
146 3sb4_A Hypothetical leucine ri 98.9 1.5E-09 5.1E-14 118.2 8.4 270 589-936 24-312 (329)
147 2o6r_A Variable lymphocyte rec 98.9 1.9E-09 6.6E-14 105.6 8.3 120 544-671 12-134 (177)
148 1ds9_A Outer arm dynein; leuci 98.9 2E-11 6.8E-16 122.3 -7.2 103 561-671 46-150 (198)
149 2r9u_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 102.3 9.7 80 590-671 33-115 (174)
150 2wfh_A SLIT homolog 2 protein 98.9 5.6E-09 1.9E-13 103.6 10.5 101 592-697 12-114 (193)
151 1w8a_A SLIT protein; signaling 98.9 4.4E-09 1.5E-13 104.5 9.4 101 592-697 10-114 (192)
152 3g39_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 101.1 9.7 101 592-697 11-114 (170)
153 1ds9_A Outer arm dynein; leuci 98.8 2.6E-11 9E-16 121.4 -8.1 107 585-696 43-151 (198)
154 2o6r_A Variable lymphocyte rec 98.8 1.3E-08 4.5E-13 99.5 10.3 106 589-697 27-136 (177)
155 1iqp_A RFCS; clamp loader, ext 98.8 3.8E-08 1.3E-12 107.0 14.2 186 177-389 25-214 (327)
156 3te6_A Regulatory protein SIR3 98.8 1.3E-07 4.3E-12 100.0 17.3 171 178-354 21-212 (318)
157 2r9u_A Variable lymphocyte rec 98.8 1.1E-08 3.7E-13 99.6 8.4 102 592-698 14-118 (174)
158 3g39_A Variable lymphocyte rec 98.6 5.5E-08 1.9E-12 94.3 9.0 82 589-672 29-113 (170)
159 2chq_A Replication factor C sm 98.6 3.2E-07 1.1E-11 99.2 14.7 182 177-387 17-204 (319)
160 4fdw_A Leucine rich hypothetic 98.6 3.2E-06 1.1E-10 93.9 23.0 124 781-929 248-379 (401)
161 1jr3_A DNA polymerase III subu 98.6 4E-07 1.4E-11 100.8 15.7 195 177-387 16-221 (373)
162 4fdw_A Leucine rich hypothetic 98.6 2.9E-06 9.8E-11 94.2 20.7 260 561-905 111-379 (401)
163 1jbk_A CLPB protein; beta barr 98.5 3.6E-07 1.2E-11 90.5 11.3 151 177-349 22-194 (195)
164 2ifg_A High affinity nerve gro 98.5 2.5E-07 8.6E-12 101.3 9.4 84 586-671 27-113 (347)
165 3bos_A Putative DNA replicatio 98.4 9.6E-07 3.3E-11 91.0 10.7 174 177-387 28-217 (242)
166 3pfi_A Holliday junction ATP-d 98.4 8.9E-06 3.1E-10 88.5 18.2 178 176-386 28-226 (338)
167 1sxj_D Activator 1 41 kDa subu 98.4 3.2E-06 1.1E-10 92.7 14.6 196 176-387 36-235 (353)
168 2ifg_A High affinity nerve gro 98.3 5.5E-07 1.9E-11 98.6 8.2 101 594-698 12-116 (347)
169 4fs7_A Uncharacterized protein 98.3 8.8E-06 3E-10 90.6 16.2 309 554-929 62-375 (394)
170 2z4s_A Chromosomal replication 98.2 1.9E-05 6.4E-10 88.7 17.1 181 204-405 130-331 (440)
171 3pvs_A Replication-associated 98.2 2.5E-05 8.4E-10 87.5 17.9 179 177-387 26-215 (447)
172 4fs7_A Uncharacterized protein 98.2 5.3E-06 1.8E-10 92.4 12.5 317 539-925 71-393 (394)
173 3h4m_A Proteasome-activating n 98.2 2.1E-05 7E-10 83.2 16.2 185 176-385 16-229 (285)
174 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.7E-05 9.2E-10 81.2 16.5 188 177-387 6-222 (262)
175 1sxj_E Activator 1 40 kDa subu 98.2 9.8E-06 3.4E-10 88.8 13.5 197 177-387 14-237 (354)
176 1sxj_A Activator 1 95 kDa subu 98.1 1.5E-05 5.2E-10 91.7 13.8 199 177-389 39-255 (516)
177 1a5t_A Delta prime, HOLB; zinc 98.1 4.8E-05 1.7E-09 82.2 16.9 170 183-386 8-204 (334)
178 3un9_A NLR family member X1; l 98.1 3.9E-07 1.3E-11 100.2 0.1 130 563-696 101-250 (372)
179 3uk6_A RUVB-like 2; hexameric 98.1 3.7E-05 1.3E-09 84.7 16.1 198 176-385 43-301 (368)
180 3u61_B DNA polymerase accessor 98.1 2.6E-05 8.7E-10 84.3 13.8 180 176-385 25-214 (324)
181 3syl_A Protein CBBX; photosynt 98.0 3.3E-05 1.1E-09 82.8 13.6 161 178-354 32-218 (309)
182 3un9_A NLR family member X1; l 98.0 3.7E-06 1.3E-10 92.4 5.6 132 539-672 101-250 (372)
183 2p65_A Hypothetical protein PF 98.0 1.1E-05 3.6E-10 79.2 8.3 45 177-227 22-66 (187)
184 1l8q_A Chromosomal replication 98.0 5.5E-05 1.9E-09 81.6 13.5 154 204-381 37-202 (324)
185 3n70_A Transport activator; si 97.9 6.9E-06 2.3E-10 76.9 5.3 114 178-322 2-115 (145)
186 2ra8_A Uncharacterized protein 97.9 5.2E-06 1.8E-10 90.4 5.0 37 780-817 278-317 (362)
187 3e4g_A ATP synthase subunit S, 97.9 2.2E-06 7.6E-11 81.7 1.6 66 864-935 83-154 (176)
188 1d2n_A N-ethylmaleimide-sensit 97.9 0.00011 3.7E-09 77.0 14.1 171 177-378 33-228 (272)
189 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 8.8E-11 81.2 1.3 92 807-911 61-154 (176)
190 1sxj_C Activator 1 40 kDa subu 97.9 8.2E-05 2.8E-09 80.7 13.5 175 177-383 25-208 (340)
191 1io0_A Tropomodulin; LRR prote 97.9 2E-05 7E-10 77.1 7.4 110 560-671 33-161 (185)
192 3rw6_A Nuclear RNA export fact 97.8 1E-05 3.5E-10 83.3 4.8 83 583-667 163-257 (267)
193 3eie_A Vacuolar protein sortin 97.8 0.00037 1.3E-08 74.8 17.2 187 176-387 17-228 (322)
194 2w58_A DNAI, primosome compone 97.8 1.9E-05 6.7E-10 78.6 6.7 118 185-322 37-158 (202)
195 2ra8_A Uncharacterized protein 97.8 6.8E-06 2.3E-10 89.5 3.4 108 561-671 137-262 (362)
196 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00062 2.1E-08 72.9 18.7 189 177-388 12-224 (322)
197 3d8b_A Fidgetin-like protein 1 97.8 0.00021 7.1E-09 77.9 14.9 187 177-388 84-296 (357)
198 2qp9_X Vacuolar protein sortin 97.8 0.00031 1E-08 76.5 15.8 187 177-387 51-261 (355)
199 3ec2_A DNA replication protein 97.8 5.6E-05 1.9E-09 73.6 8.7 121 182-322 19-142 (180)
200 2gno_A DNA polymerase III, gam 97.8 0.00012 4.1E-09 77.5 11.6 149 181-353 1-152 (305)
201 4gt6_A Cell surface protein; l 97.7 0.00014 4.9E-09 80.7 12.1 313 557-929 57-387 (394)
202 4fcw_A Chaperone protein CLPB; 97.7 0.00022 7.5E-09 76.3 13.1 136 178-322 18-169 (311)
203 4gt6_A Cell surface protein; l 97.7 0.00071 2.4E-08 75.0 17.3 299 586-930 59-367 (394)
204 3b9p_A CG5977-PA, isoform A; A 97.7 0.0011 3.7E-08 70.3 17.7 186 177-387 21-233 (297)
205 3cf0_A Transitional endoplasmi 97.7 0.00059 2E-08 72.4 15.4 180 177-381 15-222 (301)
206 1io0_A Tropomodulin; LRR prote 97.6 2.4E-05 8.3E-10 76.5 3.9 114 579-695 25-161 (185)
207 3pxg_A Negative regulator of g 97.6 0.00017 5.9E-09 81.6 10.5 145 177-353 180-338 (468)
208 3hu3_A Transitional endoplasmi 97.6 0.0005 1.7E-08 77.7 13.6 185 177-386 204-414 (489)
209 3co5_A Putative two-component 97.6 4.3E-05 1.5E-09 71.2 4.1 110 178-322 5-115 (143)
210 3vfd_A Spastin; ATPase, microt 97.6 0.0011 3.8E-08 73.2 16.2 188 176-387 114-326 (389)
211 1qvr_A CLPB protein; coiled co 97.5 0.00024 8.2E-09 87.0 11.3 154 177-352 170-344 (854)
212 2zan_A Vacuolar protein sortin 97.5 0.0014 4.8E-08 73.5 16.7 189 176-387 133-345 (444)
213 1ojl_A Transcriptional regulat 97.5 0.00026 8.9E-09 75.1 9.5 159 177-350 2-187 (304)
214 3rw6_A Nuclear RNA export fact 97.5 2.2E-05 7.6E-10 80.8 1.1 98 595-695 148-261 (267)
215 2bjv_A PSP operon transcriptio 97.5 0.00019 6.6E-09 74.7 8.4 47 177-227 6-52 (265)
216 1ofh_A ATP-dependent HSL prote 97.4 0.001 3.5E-08 70.9 13.3 156 177-352 15-214 (310)
217 2c9o_A RUVB-like 1; hexameric 97.3 0.00097 3.3E-08 75.3 12.6 96 286-386 298-409 (456)
218 1lv7_A FTSH; alpha/beta domain 97.3 0.0035 1.2E-07 64.7 15.4 184 176-384 11-222 (257)
219 4b4t_J 26S protease regulatory 97.3 0.0048 1.6E-07 66.8 16.4 178 177-380 148-354 (405)
220 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0012 4.2E-08 79.9 13.3 156 177-353 186-362 (758)
221 3pxi_A Negative regulator of g 97.3 0.00049 1.7E-08 83.3 9.4 155 177-352 491-674 (758)
222 2kjq_A DNAA-related protein; s 97.3 0.00018 6.1E-09 67.3 4.3 38 205-244 37-74 (149)
223 1in4_A RUVB, holliday junction 97.2 0.0018 6E-08 69.8 12.7 177 177-386 25-222 (334)
224 4b4t_L 26S protease subunit RP 97.1 0.0062 2.1E-07 67.0 15.8 179 176-380 180-387 (437)
225 3pxi_A Negative regulator of g 97.1 0.0011 3.6E-08 80.3 10.7 146 177-353 180-338 (758)
226 4b4t_K 26S protease regulatory 97.1 0.0039 1.3E-07 68.5 13.6 179 176-379 171-378 (428)
227 2r62_A Cell division protease 97.1 0.00051 1.8E-08 71.6 6.1 158 176-353 10-196 (268)
228 2ce7_A Cell division protein F 97.1 0.006 2E-07 68.3 14.8 179 177-380 16-221 (476)
229 4b4t_H 26S protease regulatory 97.0 0.011 3.7E-07 65.0 15.7 178 177-380 209-415 (467)
230 4h09_A Hypothetical leucine ri 96.9 0.011 3.9E-07 64.8 15.0 78 561-646 44-122 (379)
231 3m6a_A ATP-dependent protease 96.8 0.0029 1E-07 72.8 10.0 165 177-353 81-266 (543)
232 1qvr_A CLPB protein; coiled co 96.8 0.0028 9.7E-08 77.5 10.0 135 178-322 559-710 (854)
233 4b4t_M 26S protease regulatory 96.8 0.0076 2.6E-07 66.3 12.3 177 177-379 181-386 (434)
234 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00092 3.1E-08 69.7 4.7 68 204-293 123-192 (331)
235 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0025 8.6E-08 77.1 9.3 135 177-322 458-607 (758)
236 2qgz_A Helicase loader, putati 96.7 0.0013 4.6E-08 69.6 5.9 58 182-243 133-190 (308)
237 4b4t_I 26S protease regulatory 96.7 0.018 6E-07 62.6 14.4 177 177-379 182-387 (437)
238 2r44_A Uncharacterized protein 96.7 0.0085 2.9E-07 64.4 11.7 152 177-354 27-199 (331)
239 3t15_A Ribulose bisphosphate c 96.6 0.012 4.1E-07 61.9 12.1 25 203-227 35-59 (293)
240 2cvh_A DNA repair and recombin 96.5 0.0094 3.2E-07 59.7 9.8 83 205-293 21-115 (220)
241 3cf2_A TER ATPase, transitiona 96.4 0.018 6.3E-07 68.3 13.0 179 177-380 204-407 (806)
242 4h09_A Hypothetical leucine ri 96.4 0.094 3.2E-06 57.3 18.2 287 586-928 42-341 (379)
243 1um8_A ATP-dependent CLP prote 96.2 0.016 5.5E-07 63.5 10.7 23 205-227 73-95 (376)
244 1g5t_A COB(I)alamin adenosyltr 96.1 0.027 9.3E-07 54.2 10.0 115 205-323 29-163 (196)
245 2dhr_A FTSH; AAA+ protein, hex 96.0 0.065 2.2E-06 60.3 14.5 176 176-380 30-236 (499)
246 2b8t_A Thymidine kinase; deoxy 96.0 0.0045 1.5E-07 61.7 4.3 111 204-322 12-125 (223)
247 3hr8_A Protein RECA; alpha and 95.9 0.02 6.8E-07 61.3 9.3 84 203-293 60-149 (356)
248 1ixz_A ATP-dependent metallopr 95.9 0.041 1.4E-06 56.4 11.5 156 177-353 16-199 (254)
249 1xp8_A RECA protein, recombina 95.9 0.02 7E-07 61.7 9.3 83 204-293 74-162 (366)
250 1iy2_A ATP-dependent metallopr 95.9 0.042 1.4E-06 57.2 11.6 159 175-353 38-223 (278)
251 2x8a_A Nuclear valosin-contain 95.8 0.054 1.8E-06 56.1 11.9 155 177-353 10-191 (274)
252 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.019 6.5E-07 57.9 8.3 114 205-323 24-168 (235)
253 1jr3_D DNA polymerase III, del 95.8 0.1 3.5E-06 56.2 14.6 157 204-386 18-184 (343)
254 2i1q_A DNA repair and recombin 95.8 0.018 6.3E-07 61.5 8.4 89 203-292 97-213 (322)
255 1ypw_A Transitional endoplasmi 95.8 0.023 7.8E-07 68.6 10.0 157 177-353 204-385 (806)
256 2zr9_A Protein RECA, recombina 95.7 0.024 8.3E-07 60.9 9.1 83 204-293 61-149 (349)
257 1u94_A RECA protein, recombina 95.7 0.016 5.6E-07 62.3 7.5 83 204-293 63-151 (356)
258 1n0w_A DNA repair protein RAD5 95.6 0.022 7.6E-07 57.9 8.0 88 205-293 25-129 (243)
259 1v5w_A DMC1, meiotic recombina 95.6 0.042 1.4E-06 59.1 10.4 57 203-260 121-181 (343)
260 3io5_A Recombination and repai 95.5 0.038 1.3E-06 57.4 9.1 82 206-294 30-122 (333)
261 1ye8_A Protein THEP1, hypothet 95.5 0.046 1.6E-06 52.4 9.2 23 206-228 2-24 (178)
262 2z43_A DNA repair and recombin 95.5 0.035 1.2E-06 59.2 9.1 56 204-260 107-166 (324)
263 1rz3_A Hypothetical protein rb 95.1 0.024 8.1E-07 55.8 5.9 43 181-226 2-44 (201)
264 1odf_A YGR205W, hypothetical 3 95.1 0.1 3.6E-06 54.3 11.0 81 202-282 29-117 (290)
265 2px0_A Flagellar biosynthesis 94.7 0.061 2.1E-06 56.3 8.2 25 203-227 104-128 (296)
266 3dm5_A SRP54, signal recogniti 94.7 0.34 1.2E-05 53.2 14.3 25 203-227 99-123 (443)
267 3tqc_A Pantothenate kinase; bi 94.7 0.085 2.9E-06 55.6 9.0 100 179-283 69-171 (321)
268 2pze_A Cystic fibrosis transme 94.6 0.21 7.2E-06 50.0 11.4 22 206-227 36-57 (229)
269 2cbz_A Multidrug resistance-as 94.4 0.13 4.5E-06 51.8 9.6 22 206-227 33-54 (237)
270 1cr0_A DNA primase/helicase; R 94.4 0.097 3.3E-06 55.0 8.9 37 205-243 36-73 (296)
271 3c8u_A Fructokinase; YP_612366 94.3 0.033 1.1E-06 55.1 4.6 39 185-227 7-45 (208)
272 1vma_A Cell division protein F 94.2 0.2 6.7E-06 52.6 10.5 87 203-292 103-195 (306)
273 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.03 1E-06 63.1 4.4 42 178-227 23-64 (500)
274 3ice_A Transcription terminati 94.1 0.025 8.6E-07 60.2 3.4 96 188-292 163-270 (422)
275 3rfe_A Platelet glycoprotein I 94.1 0.066 2.3E-06 48.2 5.8 52 594-648 12-66 (130)
276 3upu_A ATP-dependent DNA helic 94.1 0.079 2.7E-06 59.6 7.7 23 206-228 47-69 (459)
277 4a74_A DNA repair and recombin 94.0 0.2 6.7E-06 50.2 9.9 45 204-248 25-73 (231)
278 1pzn_A RAD51, DNA repair and r 94.0 0.13 4.5E-06 55.2 8.9 90 203-293 130-241 (349)
279 1qhx_A CPT, protein (chloramph 93.9 0.024 8.3E-07 54.4 2.7 22 205-226 4-25 (178)
280 3lw7_A Adenylate kinase relate 93.8 0.028 9.7E-07 53.7 3.0 19 206-224 3-21 (179)
281 1gvn_B Zeta; postsegregational 93.8 0.056 1.9E-06 56.4 5.4 41 185-226 15-55 (287)
282 2ffh_A Protein (FFH); SRP54, s 93.8 0.24 8.3E-06 54.3 10.6 25 203-227 97-121 (425)
283 1zp6_A Hypothetical protein AT 93.7 0.038 1.3E-06 53.7 3.7 24 204-227 9-32 (191)
284 1pgv_A TMD-1, tropomodulin TMD 93.7 0.11 3.7E-06 50.2 6.8 110 561-671 39-167 (197)
285 3fwy_A Light-independent proto 93.7 0.035 1.2E-06 58.6 3.6 41 202-244 46-86 (314)
286 2ga8_A Hypothetical 39.9 kDa p 93.6 0.058 2E-06 57.2 5.1 46 180-227 2-47 (359)
287 2orw_A Thymidine kinase; TMTK, 93.6 0.011 3.8E-07 57.2 -0.4 107 205-322 4-112 (184)
288 3lda_A DNA repair protein RAD5 93.6 0.16 5.5E-06 55.4 8.8 56 204-260 178-237 (400)
289 2xxa_A Signal recognition part 93.6 0.5 1.7E-05 52.1 12.8 43 185-227 78-123 (433)
290 3kb2_A SPBC2 prophage-derived 93.6 0.033 1.1E-06 53.1 2.9 21 206-226 3-23 (173)
291 2p5t_B PEZT; postsegregational 93.5 0.059 2E-06 55.1 4.9 41 185-226 14-54 (253)
292 1ly1_A Polynucleotide kinase; 93.5 0.037 1.3E-06 53.2 3.2 22 205-226 3-24 (181)
293 3bh0_A DNAB-like replicative h 93.5 0.33 1.1E-05 51.2 10.9 51 205-259 69-119 (315)
294 3hws_A ATP-dependent CLP prote 93.5 0.053 1.8E-06 59.0 4.8 50 178-227 16-74 (363)
295 3vaa_A Shikimate kinase, SK; s 93.4 0.036 1.2E-06 54.4 3.0 22 205-226 26-47 (199)
296 4a1f_A DNAB helicase, replicat 93.3 0.21 7.2E-06 52.9 8.9 51 205-259 47-97 (338)
297 3uie_A Adenylyl-sulfate kinase 93.3 0.048 1.6E-06 53.5 3.7 25 203-227 24-48 (200)
298 1kgd_A CASK, peripheral plasma 93.2 0.037 1.3E-06 53.3 2.7 22 205-226 6-27 (180)
299 1sky_E F1-ATPase, F1-ATP synth 93.2 0.17 5.9E-06 55.8 8.1 86 206-292 153-254 (473)
300 1kag_A SKI, shikimate kinase I 93.1 0.035 1.2E-06 53.0 2.3 22 205-226 5-26 (173)
301 3trf_A Shikimate kinase, SK; a 93.1 0.041 1.4E-06 53.2 2.7 23 204-226 5-27 (185)
302 2rhm_A Putative kinase; P-loop 93.0 0.057 1.9E-06 52.5 3.8 24 203-226 4-27 (193)
303 1pgv_A TMD-1, tropomodulin TMD 93.0 0.13 4.3E-06 49.8 6.0 91 579-671 30-136 (197)
304 2dr3_A UPF0273 protein PH0284; 93.0 0.28 9.4E-06 49.7 9.1 39 205-245 24-62 (247)
305 1j8m_F SRP54, signal recogniti 92.9 0.32 1.1E-05 50.7 9.5 87 204-292 98-189 (297)
306 1q57_A DNA primase/helicase; d 92.9 0.32 1.1E-05 55.3 10.3 53 204-259 242-294 (503)
307 1knq_A Gluconate kinase; ALFA/ 92.8 0.069 2.4E-06 51.0 3.9 23 204-226 8-30 (175)
308 1ex7_A Guanylate kinase; subst 92.8 0.047 1.6E-06 52.6 2.6 21 206-226 3-23 (186)
309 1nks_A Adenylate kinase; therm 92.7 0.053 1.8E-06 52.7 3.1 23 205-227 2-24 (194)
310 4gp7_A Metallophosphoesterase; 92.7 0.055 1.9E-06 51.5 3.1 23 204-226 9-31 (171)
311 3t61_A Gluconokinase; PSI-biol 92.7 0.047 1.6E-06 53.7 2.6 24 204-227 18-41 (202)
312 2bdt_A BH3686; alpha-beta prot 92.7 0.061 2.1E-06 52.1 3.4 22 205-226 3-24 (189)
313 1uf9_A TT1252 protein; P-loop, 92.6 0.065 2.2E-06 52.6 3.5 25 202-226 6-30 (203)
314 1zuh_A Shikimate kinase; alpha 92.6 0.053 1.8E-06 51.4 2.7 24 203-226 6-29 (168)
315 2qt1_A Nicotinamide riboside k 92.6 0.081 2.8E-06 52.2 4.2 25 203-227 20-44 (207)
316 1zu4_A FTSY; GTPase, signal re 92.5 0.65 2.2E-05 49.0 11.4 26 202-227 103-128 (320)
317 4eun_A Thermoresistant glucoki 92.5 0.057 2E-06 53.0 3.0 23 204-226 29-51 (200)
318 1fx0_B ATP synthase beta chain 92.5 0.27 9.3E-06 54.3 8.5 99 188-292 154-275 (498)
319 2j37_W Signal recognition part 92.5 0.94 3.2E-05 50.8 13.1 26 202-227 99-124 (504)
320 3kl4_A SRP54, signal recogniti 92.5 0.57 1.9E-05 51.4 11.1 25 203-227 96-120 (433)
321 3rfe_A Platelet glycoprotein I 92.5 0.17 5.9E-06 45.4 5.8 53 616-672 11-66 (130)
322 3iij_A Coilin-interacting nucl 92.4 0.052 1.8E-06 52.2 2.4 23 204-226 11-33 (180)
323 3tr0_A Guanylate kinase, GMP k 92.4 0.063 2.1E-06 52.8 3.1 22 205-226 8-29 (205)
324 1kht_A Adenylate kinase; phosp 92.4 0.06 2.1E-06 52.2 2.9 23 205-227 4-26 (192)
325 3cf2_A TER ATPase, transitiona 92.3 1 3.5E-05 53.5 13.7 159 175-353 475-661 (806)
326 2ze6_A Isopentenyl transferase 92.3 0.064 2.2E-06 54.8 3.2 23 205-227 2-24 (253)
327 2r6a_A DNAB helicase, replicat 92.3 0.3 1E-05 54.7 8.9 49 205-256 204-252 (454)
328 1xjc_A MOBB protein homolog; s 92.3 0.11 3.6E-06 49.1 4.3 25 203-227 3-27 (169)
329 3asz_A Uridine kinase; cytidin 92.3 0.077 2.6E-06 52.5 3.6 24 203-226 5-28 (211)
330 2if2_A Dephospho-COA kinase; a 92.3 0.063 2.1E-06 52.8 2.9 21 206-226 3-23 (204)
331 1ls1_A Signal recognition part 92.3 0.46 1.6E-05 49.6 9.7 24 204-227 98-121 (295)
332 1ukz_A Uridylate kinase; trans 92.2 0.08 2.7E-06 52.0 3.7 24 203-226 14-37 (203)
333 1jjv_A Dephospho-COA kinase; P 92.2 0.074 2.5E-06 52.4 3.4 22 205-226 3-24 (206)
334 2yhs_A FTSY, cell division pro 92.2 0.78 2.7E-05 50.9 11.7 43 202-247 291-333 (503)
335 1g8p_A Magnesium-chelatase 38 92.2 0.073 2.5E-06 57.4 3.6 45 177-227 24-68 (350)
336 3a00_A Guanylate kinase, GMP k 92.2 0.055 1.9E-06 52.3 2.4 22 205-226 2-23 (186)
337 2jaq_A Deoxyguanosine kinase; 92.2 0.065 2.2E-06 52.7 2.9 22 206-227 2-23 (205)
338 1y63_A LMAJ004144AAA protein; 92.2 0.078 2.7E-06 51.2 3.4 23 204-226 10-32 (184)
339 2yvu_A Probable adenylyl-sulfa 92.1 0.089 3.1E-06 50.8 3.8 25 203-227 12-36 (186)
340 3e70_C DPA, signal recognition 92.1 0.49 1.7E-05 50.1 9.8 25 203-227 128-152 (328)
341 3tau_A Guanylate kinase, GMP k 92.1 0.072 2.5E-06 52.6 3.1 24 204-227 8-31 (208)
342 1via_A Shikimate kinase; struc 92.1 0.057 2E-06 51.6 2.3 21 206-226 6-26 (175)
343 4akg_A Glutathione S-transfera 92.1 0.98 3.4E-05 60.9 14.6 138 206-353 1269-1431(2695)
344 1tev_A UMP-CMP kinase; ploop, 92.1 0.076 2.6E-06 51.6 3.3 23 204-226 3-25 (196)
345 2plr_A DTMP kinase, probable t 92.0 0.17 5.7E-06 49.9 5.7 23 205-227 5-27 (213)
346 1uj2_A Uridine-cytidine kinase 92.0 0.082 2.8E-06 54.0 3.4 25 202-226 20-44 (252)
347 1cke_A CK, MSSA, protein (cyti 91.9 0.071 2.4E-06 53.4 2.9 22 205-226 6-27 (227)
348 2j41_A Guanylate kinase; GMP, 91.9 0.072 2.5E-06 52.4 2.9 23 205-227 7-29 (207)
349 2c95_A Adenylate kinase 1; tra 91.9 0.077 2.6E-06 51.7 3.1 23 204-226 9-31 (196)
350 2qor_A Guanylate kinase; phosp 91.9 0.065 2.2E-06 52.8 2.5 24 203-226 11-34 (204)
351 3a4m_A L-seryl-tRNA(SEC) kinas 91.9 0.083 2.8E-06 54.3 3.4 24 204-227 4-27 (260)
352 2q6t_A DNAB replication FORK h 91.9 0.44 1.5E-05 53.1 9.6 52 205-259 201-252 (444)
353 2iyv_A Shikimate kinase, SK; t 91.8 0.056 1.9E-06 52.1 1.9 21 206-226 4-24 (184)
354 1qf9_A UMP/CMP kinase, protein 91.8 0.1 3.5E-06 50.6 3.8 24 203-226 5-28 (194)
355 2hf9_A Probable hydrogenase ni 91.8 0.11 3.7E-06 52.0 4.1 25 203-227 37-61 (226)
356 3tlx_A Adenylate kinase 2; str 91.7 0.14 4.9E-06 51.9 4.9 24 203-226 28-51 (243)
357 1lvg_A Guanylate kinase, GMP k 91.7 0.067 2.3E-06 52.4 2.3 22 205-226 5-26 (198)
358 3cm0_A Adenylate kinase; ATP-b 91.7 0.087 3E-06 50.8 3.1 22 205-226 5-26 (186)
359 1htw_A HI0065; nucleotide-bind 91.6 0.1 3.5E-06 48.8 3.4 23 205-227 34-56 (158)
360 1e6c_A Shikimate kinase; phosp 91.6 0.067 2.3E-06 50.9 2.1 21 206-226 4-24 (173)
361 2grj_A Dephospho-COA kinase; T 91.6 0.094 3.2E-06 50.9 3.1 24 203-226 11-34 (192)
362 3aez_A Pantothenate kinase; tr 91.5 0.11 3.8E-06 54.7 4.0 24 203-226 89-112 (312)
363 3umf_A Adenylate kinase; rossm 91.5 0.1 3.5E-06 51.6 3.4 26 202-227 27-52 (217)
364 2pt5_A Shikimate kinase, SK; a 91.5 0.088 3E-06 49.8 2.9 21 206-226 2-22 (168)
365 2bbw_A Adenylate kinase 4, AK4 91.5 0.091 3.1E-06 53.5 3.1 23 204-226 27-49 (246)
366 2cdn_A Adenylate kinase; phosp 91.4 0.1 3.5E-06 51.2 3.3 24 203-226 19-42 (201)
367 1znw_A Guanylate kinase, GMP k 91.4 0.096 3.3E-06 51.6 3.1 22 205-226 21-42 (207)
368 2bwj_A Adenylate kinase 5; pho 91.4 0.09 3.1E-06 51.4 2.9 22 205-226 13-34 (199)
369 1rj9_A FTSY, signal recognitio 91.3 0.11 3.7E-06 54.6 3.6 25 203-227 101-125 (304)
370 3ney_A 55 kDa erythrocyte memb 91.3 0.091 3.1E-06 51.0 2.7 24 203-226 18-41 (197)
371 2pez_A Bifunctional 3'-phospho 91.2 0.12 3.9E-06 49.6 3.4 24 204-227 5-28 (179)
372 2wsm_A Hydrogenase expression/ 91.2 0.1 3.5E-06 52.0 3.1 41 181-227 13-53 (221)
373 2pbr_A DTMP kinase, thymidylat 91.1 0.1 3.4E-06 50.8 2.9 22 206-227 2-23 (195)
374 2z0h_A DTMP kinase, thymidylat 91.1 0.28 9.5E-06 47.6 6.2 22 206-227 2-23 (197)
375 2ck3_D ATP synthase subunit be 91.1 0.61 2.1E-05 51.2 9.3 99 188-292 142-262 (482)
376 4e22_A Cytidylate kinase; P-lo 91.1 0.1 3.6E-06 53.2 3.1 22 205-226 28-49 (252)
377 2jeo_A Uridine-cytidine kinase 91.1 0.13 4.5E-06 52.2 3.8 24 203-226 24-47 (245)
378 2vli_A Antibiotic resistance p 91.0 0.074 2.5E-06 51.1 1.8 23 204-226 5-27 (183)
379 3p32_A Probable GTPase RV1496/ 91.0 0.22 7.7E-06 53.6 5.8 38 186-227 65-102 (355)
380 1nn5_A Similar to deoxythymidy 90.9 0.17 5.6E-06 50.1 4.4 24 204-227 9-32 (215)
381 1z6g_A Guanylate kinase; struc 90.9 0.091 3.1E-06 52.3 2.4 22 205-226 24-45 (218)
382 2f1r_A Molybdopterin-guanine d 90.9 0.086 3E-06 50.0 2.1 23 205-227 3-25 (171)
383 2f6r_A COA synthase, bifunctio 90.8 0.14 4.7E-06 53.2 3.8 24 203-226 74-97 (281)
384 3b9q_A Chloroplast SRP recepto 90.8 0.26 8.7E-06 51.7 5.8 25 203-227 99-123 (302)
385 3zvl_A Bifunctional polynucleo 90.7 0.59 2E-05 51.5 9.0 25 203-227 257-281 (416)
386 2ged_A SR-beta, signal recogni 90.7 0.18 6.3E-06 48.7 4.4 26 202-227 46-71 (193)
387 3e1s_A Exodeoxyribonuclease V, 90.7 0.46 1.6E-05 54.7 8.3 96 205-320 205-313 (574)
388 1sq5_A Pantothenate kinase; P- 90.6 0.28 9.4E-06 51.7 6.0 24 203-226 79-102 (308)
389 3llm_A ATP-dependent RNA helic 90.6 1.5 5.3E-05 43.8 11.4 88 206-294 78-187 (235)
390 3cmu_A Protein RECA, recombina 90.6 0.25 8.5E-06 64.2 6.4 84 203-293 1426-1515(2050)
391 2wwf_A Thymidilate kinase, put 90.5 0.12 4.2E-06 51.0 2.9 24 204-227 10-33 (212)
392 1yrb_A ATP(GTP)binding protein 90.5 0.17 5.9E-06 51.9 4.1 27 201-227 11-37 (262)
393 3jvv_A Twitching mobility prot 90.5 0.065 2.2E-06 57.6 0.9 111 205-328 124-236 (356)
394 3cmu_A Protein RECA, recombina 90.5 0.38 1.3E-05 62.5 7.9 85 203-294 382-472 (2050)
395 1aky_A Adenylate kinase; ATP:A 90.5 0.13 4.3E-06 51.3 3.0 22 205-226 5-26 (220)
396 1s96_A Guanylate kinase, GMP k 90.4 0.13 4.3E-06 51.2 2.9 24 204-227 16-39 (219)
397 2i3b_A HCR-ntpase, human cance 90.4 0.12 4E-06 50.1 2.6 23 206-228 3-25 (189)
398 3l0o_A Transcription terminati 90.4 0.65 2.2E-05 49.5 8.3 53 187-245 163-216 (427)
399 1vht_A Dephospho-COA kinase; s 90.4 0.15 5.2E-06 50.6 3.5 23 204-226 4-26 (218)
400 1gtv_A TMK, thymidylate kinase 90.3 0.074 2.5E-06 52.7 1.1 22 206-227 2-23 (214)
401 1zd8_A GTP:AMP phosphotransfer 90.3 0.13 4.4E-06 51.6 2.9 23 204-226 7-29 (227)
402 1m7g_A Adenylylsulfate kinase; 90.2 0.16 5.5E-06 50.2 3.5 24 204-227 25-48 (211)
403 3fb4_A Adenylate kinase; psych 90.2 0.14 4.7E-06 50.9 2.9 21 206-226 2-22 (216)
404 1np6_A Molybdopterin-guanine d 90.1 0.15 5E-06 48.6 3.0 25 203-227 5-29 (174)
405 3nwj_A ATSK2; P loop, shikimat 90.1 0.11 3.7E-06 52.8 2.1 21 206-226 50-70 (250)
406 1g41_A Heat shock protein HSLU 90.1 0.22 7.6E-06 54.8 4.8 51 177-227 15-73 (444)
407 3end_A Light-independent proto 90.0 0.31 1.1E-05 51.3 5.8 43 201-245 38-80 (307)
408 2og2_A Putative signal recogni 90.0 0.33 1.1E-05 52.0 5.9 25 203-227 156-180 (359)
409 2onk_A Molybdate/tungstate ABC 90.0 0.15 5E-06 51.5 3.0 22 205-226 25-46 (240)
410 3gfo_A Cobalt import ATP-bindi 90.0 0.19 6.4E-06 51.8 3.8 21 206-226 36-56 (275)
411 1tue_A Replication protein E1; 90.0 0.21 7.2E-06 48.3 3.9 37 186-227 45-81 (212)
412 3tif_A Uncharacterized ABC tra 89.9 0.15 5.2E-06 51.3 3.0 21 206-226 33-53 (235)
413 1zak_A Adenylate kinase; ATP:A 89.9 0.13 4.5E-06 51.3 2.6 24 204-227 5-28 (222)
414 2v54_A DTMP kinase, thymidylat 89.9 0.15 5E-06 50.0 2.9 23 205-227 5-27 (204)
415 2pcj_A ABC transporter, lipopr 89.9 0.15 5.1E-06 50.9 3.0 21 206-226 32-52 (224)
416 2ehv_A Hypothetical protein PH 89.9 0.15 5.2E-06 51.8 3.1 22 205-226 31-52 (251)
417 3dl0_A Adenylate kinase; phosp 89.9 0.15 5.1E-06 50.6 2.9 21 206-226 2-22 (216)
418 1b0u_A Histidine permease; ABC 89.8 0.2 6.7E-06 51.4 3.8 22 205-226 33-54 (262)
419 3k1j_A LON protease, ATP-depen 89.8 0.22 7.7E-06 58.0 4.8 43 177-227 41-83 (604)
420 3ake_A Cytidylate kinase; CMP 89.7 0.16 5.4E-06 50.0 2.9 21 206-226 4-24 (208)
421 3d3q_A TRNA delta(2)-isopenten 89.7 0.17 5.6E-06 53.6 3.2 22 205-226 8-29 (340)
422 4g1u_C Hemin import ATP-bindin 89.6 0.23 7.7E-06 51.0 4.1 21 206-226 39-59 (266)
423 1mv5_A LMRA, multidrug resista 89.4 0.25 8.6E-06 50.0 4.2 23 205-227 29-51 (243)
424 3r20_A Cytidylate kinase; stru 89.4 0.17 5.9E-06 50.5 2.9 23 204-226 9-31 (233)
425 3lnc_A Guanylate kinase, GMP k 89.3 0.13 4.4E-06 51.7 2.0 22 205-226 28-50 (231)
426 3vr4_D V-type sodium ATPase su 89.3 0.44 1.5E-05 52.0 6.3 85 206-292 153-257 (465)
427 3cmw_A Protein RECA, recombina 89.3 0.43 1.5E-05 61.2 7.0 81 205-292 384-470 (1706)
428 2r9v_A ATP synthase subunit al 89.2 0.49 1.7E-05 52.4 6.5 96 188-292 164-276 (515)
429 3a8t_A Adenylate isopentenyltr 89.2 0.23 8E-06 52.2 3.9 25 203-227 39-63 (339)
430 3bgw_A DNAB-like replicative h 89.1 1.5 5.3E-05 48.5 10.7 50 205-258 198-247 (444)
431 3be4_A Adenylate kinase; malar 89.1 0.15 5.2E-06 50.6 2.4 23 205-227 6-28 (217)
432 3b85_A Phosphate starvation-in 89.1 0.14 4.9E-06 50.3 2.1 22 206-227 24-45 (208)
433 2qe7_A ATP synthase subunit al 89.1 0.47 1.6E-05 52.5 6.3 96 188-292 151-263 (502)
434 2eyu_A Twitching motility prot 89.1 0.29 9.8E-06 50.1 4.4 110 204-327 25-137 (261)
435 2wji_A Ferrous iron transport 89.0 0.23 7.9E-06 46.7 3.5 23 205-227 4-26 (165)
436 2zej_A Dardarin, leucine-rich 89.0 0.19 6.4E-06 48.3 2.8 22 206-227 4-25 (184)
437 1ji0_A ABC transporter; ATP bi 88.9 0.2 6.7E-06 50.6 3.0 21 206-226 34-54 (240)
438 1oix_A RAS-related protein RAB 88.9 0.19 6.6E-06 48.6 2.9 24 204-227 29-52 (191)
439 1sgw_A Putative ABC transporte 88.9 0.17 5.8E-06 50.0 2.4 22 206-227 37-58 (214)
440 2olj_A Amino acid ABC transpor 88.9 0.2 6.8E-06 51.3 3.0 22 205-226 51-72 (263)
441 1g6h_A High-affinity branched- 88.8 0.2 6.9E-06 51.2 3.0 21 206-226 35-55 (257)
442 1e4v_A Adenylate kinase; trans 88.8 0.2 6.8E-06 49.6 2.9 21 206-226 2-22 (214)
443 2d2e_A SUFC protein; ABC-ATPas 88.7 0.21 7.3E-06 50.7 3.1 21 206-226 31-51 (250)
444 3crm_A TRNA delta(2)-isopenten 88.7 0.21 7.2E-06 52.4 3.1 23 204-226 5-27 (323)
445 2xb4_A Adenylate kinase; ATP-b 88.7 0.2 6.9E-06 50.0 2.9 21 206-226 2-22 (223)
446 2ff7_A Alpha-hemolysin translo 88.7 0.21 7.2E-06 50.6 3.0 21 206-226 37-57 (247)
447 1vpl_A ABC transporter, ATP-bi 88.6 0.21 7.3E-06 50.8 3.0 22 206-227 43-64 (256)
448 2zu0_C Probable ATP-dependent 88.5 0.22 7.6E-06 51.1 3.1 22 206-227 48-69 (267)
449 3hjn_A DTMP kinase, thymidylat 88.5 0.67 2.3E-05 45.0 6.4 22 207-228 3-24 (197)
450 2dyk_A GTP-binding protein; GT 88.4 0.26 8.9E-06 45.8 3.4 23 205-227 2-24 (161)
451 2vp4_A Deoxynucleoside kinase; 88.4 0.25 8.7E-06 49.5 3.4 24 203-226 19-42 (230)
452 2ghi_A Transport protein; mult 88.3 0.23 7.9E-06 50.8 3.0 22 206-227 48-69 (260)
453 2ixe_A Antigen peptide transpo 88.3 0.23 7.8E-06 51.1 3.0 23 205-227 46-68 (271)
454 1ak2_A Adenylate kinase isoenz 88.3 0.24 8.2E-06 49.8 3.1 23 205-227 17-39 (233)
455 3exa_A TRNA delta(2)-isopenten 88.3 0.26 8.9E-06 51.2 3.4 23 204-226 3-25 (322)
456 2qi9_C Vitamin B12 import ATP- 88.2 0.23 8E-06 50.3 3.0 21 206-226 28-48 (249)
457 1cp2_A CP2, nitrogenase iron p 88.1 0.46 1.6E-05 48.8 5.3 38 205-244 2-39 (269)
458 2yz2_A Putative ABC transporte 88.1 0.24 8.2E-06 50.9 3.0 22 206-227 35-56 (266)
459 2r8r_A Sensor protein; KDPD, P 88.1 0.66 2.3E-05 45.7 6.0 38 205-244 7-44 (228)
460 1ltq_A Polynucleotide kinase; 88.0 0.24 8.3E-06 52.0 3.2 22 205-226 3-24 (301)
461 4eaq_A DTMP kinase, thymidylat 88.0 0.45 1.5E-05 47.6 5.0 26 203-228 25-50 (229)
462 2nq2_C Hypothetical ABC transp 88.0 0.24 8.3E-06 50.4 3.0 22 206-227 33-54 (253)
463 2v3c_C SRP54, signal recogniti 88.0 0.3 1E-05 53.8 4.0 26 203-228 98-123 (432)
464 3sr0_A Adenylate kinase; phosp 87.9 0.25 8.5E-06 48.4 2.9 22 206-227 2-23 (206)
465 2ihy_A ABC transporter, ATP-bi 87.9 0.25 8.4E-06 51.1 3.0 21 206-226 49-69 (279)
466 2f9l_A RAB11B, member RAS onco 87.8 0.25 8.6E-06 48.1 2.9 24 204-227 5-28 (199)
467 3foz_A TRNA delta(2)-isopenten 87.8 0.32 1.1E-05 50.4 3.7 24 203-226 9-32 (316)
468 2ce2_X GTPase HRAS; signaling 87.6 0.26 8.8E-06 45.9 2.8 22 206-227 5-26 (166)
469 1a7j_A Phosphoribulokinase; tr 87.6 0.14 5E-06 53.3 1.1 24 203-226 4-27 (290)
470 1q3t_A Cytidylate kinase; nucl 87.6 0.27 9.4E-06 49.4 3.1 25 202-226 14-38 (236)
471 2v9p_A Replication protein E1; 87.5 0.28 9.5E-06 51.2 3.1 22 205-226 127-148 (305)
472 2wjg_A FEOB, ferrous iron tran 87.4 0.33 1.1E-05 46.6 3.4 24 204-227 7-30 (188)
473 1nlf_A Regulatory protein REPA 87.4 0.28 9.7E-06 50.8 3.1 22 205-226 31-52 (279)
474 3dzd_A Transcriptional regulat 87.3 0.8 2.8E-05 49.4 6.8 47 177-227 129-175 (368)
475 2c61_A A-type ATP synthase non 87.2 0.36 1.2E-05 53.1 3.9 100 188-292 141-258 (469)
476 2ck3_A ATP synthase subunit al 87.2 0.75 2.6E-05 51.0 6.4 101 188-293 151-272 (510)
477 2afh_E Nitrogenase iron protei 87.1 0.59 2E-05 48.7 5.5 38 205-244 3-40 (289)
478 3nh6_A ATP-binding cassette SU 87.1 0.27 9.2E-06 51.4 2.8 22 205-226 81-102 (306)
479 3gqb_B V-type ATP synthase bet 87.1 0.31 1.1E-05 53.2 3.3 87 206-292 149-260 (464)
480 2qmh_A HPR kinase/phosphorylas 87.1 0.32 1.1E-05 46.7 3.0 23 205-227 35-57 (205)
481 2fz4_A DNA repair protein RAD2 87.1 3.8 0.00013 40.9 11.3 99 207-319 111-225 (237)
482 2lkc_A Translation initiation 87.1 0.38 1.3E-05 45.6 3.6 25 203-227 7-31 (178)
483 2nzj_A GTP-binding protein REM 87.1 0.3 1E-05 46.1 3.0 24 204-227 4-27 (175)
484 3f9v_A Minichromosome maintena 87.1 0.22 7.5E-06 57.7 2.3 51 177-227 295-350 (595)
485 3vkw_A Replicase large subunit 87.0 1 3.5E-05 49.3 7.3 26 201-226 158-183 (446)
486 1z2a_A RAS-related protein RAB 87.0 0.34 1.2E-05 45.3 3.2 24 204-227 5-28 (168)
487 3sop_A Neuronal-specific septi 86.9 0.32 1.1E-05 50.0 3.1 22 206-227 4-25 (270)
488 2pjz_A Hypothetical protein ST 86.9 0.31 1.1E-05 49.8 3.0 21 206-226 32-52 (263)
489 1w36_D RECD, exodeoxyribonucle 86.9 1.8 6.2E-05 50.2 9.9 46 205-250 165-211 (608)
490 3con_A GTPase NRAS; structural 86.8 0.29 1E-05 47.1 2.7 23 205-227 22-44 (190)
491 1svi_A GTP-binding protein YSX 86.7 0.4 1.4E-05 46.3 3.6 25 203-227 22-46 (195)
492 1fzq_A ADP-ribosylation factor 86.6 0.42 1.4E-05 45.6 3.7 25 203-227 15-39 (181)
493 1svm_A Large T antigen; AAA+ f 86.6 0.59 2E-05 50.4 5.1 24 203-226 168-191 (377)
494 4dzz_A Plasmid partitioning pr 86.6 0.62 2.1E-05 45.5 5.0 42 205-248 2-44 (206)
495 3q72_A GTP-binding protein RAD 86.5 0.31 1.1E-05 45.5 2.7 22 206-227 4-25 (166)
496 2xau_A PRE-mRNA-splicing facto 86.5 3.3 0.00011 49.5 12.1 33 185-225 98-130 (773)
497 2erx_A GTP-binding protein DI- 86.5 0.34 1.2E-05 45.5 3.0 23 205-227 4-26 (172)
498 3io3_A DEHA2D07832P; chaperone 86.4 0.76 2.6E-05 49.0 5.9 42 203-246 17-60 (348)
499 1fx0_A ATP synthase alpha chai 86.4 0.51 1.7E-05 52.3 4.5 83 206-292 165-264 (507)
500 3fkq_A NTRC-like two-domain pr 86.4 0.67 2.3E-05 50.3 5.5 41 201-243 140-181 (373)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.3e-51 Score=475.93 Aligned_cols=316 Identities=18% Similarity=0.255 Sum_probs=259.2
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc--chhhhccCCceEEEEeCCcc--cHHHHHHHH
Q 002187 180 VGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN--NVDVKKKFEKRMWICVSELF--DEFRIARAI 255 (955)
Q Consensus 180 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 255 (955)
|||++++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997542 23689999999999999999999998 67889999999999999985 899999999
Q ss_pred HHHHcCCCC-------CCCChHHHHHHHHHHhcCc-eEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHH
Q 002187 256 IEALTGSAS-------NFGEFQSLMQHIQECVQRK-KFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVAC 327 (955)
Q Consensus 256 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 327 (955)
+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986421 2234567789999999996 9999999999854222321 27999999999999998
Q ss_pred hhc-CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHHHhhh
Q 002187 328 IMG-STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNILESE 406 (955)
Q Consensus 328 ~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~~ 406 (955)
.++ ...+|+|++|+.++||+||.+.+|+.. ..+++.+++++|+++|+|+||||+++|+.|+.+ .. +|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 876 346899999999999999999987643 247788999999999999999999999999776 32 343444443
Q ss_pred chhhhhhhcchhhHHHHhhhcCCHhHHHHHh-----------hhccCCCCcccchHHHHHHHHHc--CCcccCC-CCcHH
Q 002187 407 IWEIEEVEKGLLAPLLLSYNELPPKIKQCFT-----------YCAVFPKDYRIWKYKLIELWMAQ--GYLSEKG-PKEME 472 (955)
Q Consensus 407 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~Li~~W~a~--g~i~~~~-~~~~~ 472 (955)
.+.. ...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.+++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3332 2456999999999999999999999 999999999999 8999999 9998776 67788
Q ss_pred HHHHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhccccce
Q 002187 473 DIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLCMNECF 521 (955)
Q Consensus 473 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~ 521 (955)
++++ ||++|+++||+++...+ ...+|+|||+||++|++++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987543 345799999999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.3e-40 Score=386.79 Aligned_cols=286 Identities=21% Similarity=0.208 Sum_probs=230.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCcccHHHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEK-RMWICVSELFDEFRIARAII 256 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 256 (955)
..|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 4679999999999999999999998788999986 89999999999988888888
Q ss_pred HHHcCCC------CC-----CCChHHHHHHHHHHh---cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC
Q 002187 257 EALTGSA------SN-----FGEFQSLMQHIQECV---QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 257 ~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
+.+.... .+ ..+.+.+...+++.| .+||+||||||||+. +.|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7653211 01 013445667777766 689999999999973 345543 2 68999999999
Q ss_pred hhHHHhhcCcceEeCC------CCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCC-C
Q 002187 323 ETVACIMGSTNIISIN------VLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKN-T 395 (955)
Q Consensus 323 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~-~ 395 (955)
+.++..+.....|.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998765544567777 999999999999984 221 1 1223333 9999999999999999874 6
Q ss_pred HHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhH-HHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHHH
Q 002187 396 EKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKI-KQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMEDI 474 (955)
Q Consensus 396 ~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~ 474 (955)
.++|... ....+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7888753 12458999999999999999 99999999999999999999999999987 145
Q ss_pred HHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHH
Q 002187 475 GEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQ 513 (955)
Q Consensus 475 ~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~ 513 (955)
++.+|++|+++|||+... ...+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 889999999999998731 2246899999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-38 Score=412.68 Aligned_cols=312 Identities=21% Similarity=0.302 Sum_probs=250.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhh-hccC-CceEEEEeCCccc--HH
Q 002187 174 IDESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDV-KKKF-EKRMWICVSELFD--EF 249 (955)
Q Consensus 174 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~ 249 (955)
.+...||||++++++|.++|.... ++.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 445679999999999999997543 36889999999999999999999997654 4456 5677999998543 45
Q ss_pred HHHHHHHHHHcCCC----CCCCChHHHHHHHHHHhcCc--eEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 250 RIARAIIEALTGSA----SNFGEFQSLMQHIQECVQRK--KFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 250 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
..+..++..+.... ....+.+.+...++..+.++ ||||||||||+.. .|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEcCCH
Confidence 55777778776542 22346788889999999877 9999999999742 2332 25789999999999
Q ss_pred hHHHh-hcCcceEeCCC-CChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHH
Q 002187 324 TVACI-MGSTNIISINV-LSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQN 401 (955)
Q Consensus 324 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~ 401 (955)
.++.. ++....+.+++ |++++|++||...++.. .+++.+++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45677899996 99999999999988532 234456799999999999999999999998775 35766
Q ss_pred HHhhhchhh--------hhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHHH
Q 002187 402 ILESEIWEI--------EEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEMED 473 (955)
Q Consensus 402 ~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~ 473 (955)
.++...... ......+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 655432111 11124589999999999999999999999999999999999999999665 47
Q ss_pred HHHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhcccc
Q 002187 474 IGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLCMNE 519 (955)
Q Consensus 474 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e 519 (955)
.++.+|++|+++||++... ++...+|+|||++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 7899999999999998643 344567999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=345.61 Aligned_cols=306 Identities=22% Similarity=0.298 Sum_probs=235.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhh-hccC-CceEEEEeCCcccHHHHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDV-KKKF-EKRMWICVSELFDEFRIA 252 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~ 252 (955)
.++.||||+.++++|.++|.... ++.++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34579999999999999997532 35789999999999999999999998766 7889 57999999876 333333
Q ss_pred HH---HHHHHcCC----CCCCCChHHHHHHHHHHhcC--ceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 253 RA---IIEALTGS----ASNFGEFQSLMQHIQECVQR--KKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 253 ~~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
.. ++..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+ ..+ .+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l-~~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VL-KAF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HH-HTT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HH-HHh---cCCCeEEEECCCc
Confidence 33 34455421 12334567788888888876 78999999998632 22 222 5689999999999
Q ss_pred hHHHhhcCcceEeC---CCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHH
Q 002187 324 TVACIMGSTNIISI---NVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQ 400 (955)
Q Consensus 324 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~ 400 (955)
.++..+. ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+. ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8876643 233444 6999999999999988642 122345689999999999999999999998764 3677
Q ss_pred HHHhhhchhh--------hhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCCcHH
Q 002187 401 NILESEIWEI--------EEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPKEME 472 (955)
Q Consensus 401 ~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~ 472 (955)
..++...... ......+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~ 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------T 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------H
Confidence 7665432111 11123588999999999999999999999999999999999999999653 3
Q ss_pred HHHHHHHHHHhhccCcccccccCCCcEeEEEeChHHHHHHHHhc
Q 002187 473 DIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDFAQFLC 516 (955)
Q Consensus 473 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~ 516 (955)
+.+..++++|+++|||+... ++...+|+||+++|++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 45788999999999998543 234467999999999999874
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-25 Score=272.45 Aligned_cols=348 Identities=15% Similarity=0.173 Sum_probs=255.9
Q ss_pred CceEEEEEEccCCCC------------------cchhh-hccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCC
Q 002187 539 KKVFHLMLTLHRGAS------------------VPISI-WDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDG 599 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~------------------~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~ 599 (955)
.+++.+.+..+.+.. +|..+ +..+++|++|.+.+|..... +|..|.++++|++|+|++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~---iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ---LPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS---CCGGGGGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc---ChHHHhCCCCCCEEECcC
Confidence 578899999988876 56554 34789999999988863222 345588999999999999
Q ss_pred CC-cc--cccccccCCC-------CcceEEeecCCCccccch--hhcCCCCCCEEeeCCCCCccccCccccCCCCCcEee
Q 002187 600 SV-II--EIPTNIEKLL-------HLKYLNLSCQMEIERLPE--TLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLE 667 (955)
Q Consensus 600 ~~-~~--~lp~~i~~L~-------~Lr~L~L~~~~~i~~LP~--~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~ 667 (955)
|. +. .+|..++++. +|++|+|++|. +..+|. .++++++|++|+|++|. +..+| .+..+++|++|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence 98 76 4887777666 99999999998 889998 89999999999999998 77899 889999999999
Q ss_pred CCCCCCCcccccCCCCCCC-CCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhc--cCCCCCCc
Q 002187 668 NDQTDSLRYLPVGIGELIS-LRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAEL--EKKKNLIE 744 (955)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l--~~~~~L~~ 744 (955)
+++|. +..+|..++.+++ |+.|++..+.... .+..+..+ ...+|+.|.+.+..-..... .....+ ....+|+.
T Consensus 602 Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 602 LDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK-SVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINAST 677 (876)
T ss_dssp CCSSC-CSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT-CSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEE
T ss_pred CcCCc-cccchHHHhhccccCCEEECcCCCCCc-Cchhhhcc-ccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCE
Confidence 99984 5588988999998 9999887766542 22222111 11224444444321100000 000111 13458899
Q ss_pred EEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhc--------ccccccEEEEeC
Q 002187 745 LGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVM--------SLTNLRVLHLRW 816 (955)
Q Consensus 745 L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~--------~l~~L~~L~L~~ 816 (955)
|+|+.|.+...+. ..+..+++|+.|+|++|.+.. + |.++. ++++|+.|+|++
T Consensus 678 L~Ls~N~L~~lp~-----------------~~~~~l~~L~~L~Ls~N~L~~--i-p~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 678 VTLSYNEIQKFPT-----------------ELFATGSPISTIILSNNLMTS--I-PENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp EECCSSCCCSCCH-----------------HHHHTTCCCSEEECCSCCCSC--C-CTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred EEccCCcCCccCH-----------------HHHccCCCCCEEECCCCcCCc--c-ChHHhccccccccccCCccEEECCC
Confidence 9999986653221 123357899999999998886 7 44433 234999999999
Q ss_pred CCCCCcCCC-CC--CCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccc
Q 002187 817 CSNCEHLPP-LG--KLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIR 893 (955)
Q Consensus 817 ~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~ 893 (955)
| .++.+|. +. .+++|+.|+|++|. +..++.. ...+++|+.|+|++++.+......+..|..+.
T Consensus 738 N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 738 N-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp S-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred C-CCccchHHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 9 6667776 54 89999999998876 4333322 23789999999998876666666666777889
Q ss_pred cCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCCc
Q 002187 894 IMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPIL 933 (955)
Q Consensus 894 ~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 933 (955)
.+++|+.|+|++|. +..+|..+. ++|+.|+|++|+..
T Consensus 804 ~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 804 TCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp GCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTC
T ss_pred cCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCC
Confidence 99999999999997 699998865 79999999999753
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.2e-25 Score=268.83 Aligned_cols=346 Identities=15% Similarity=0.184 Sum_probs=246.6
Q ss_pred CceEEEEEEccCCCC------------------cchhhh-ccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCC
Q 002187 539 KKVFHLMLTLHRGAS------------------VPISIW-DNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDG 599 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~------------------~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~ 599 (955)
.+++.+.+..+.+.. +|..+. ..+++|++|.+.++..... +|..|.++++|++|+|++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK---LPTFLKALPEMQLINVAC 282 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS---CCTTTTTCSSCCEEECTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc---ChHHHhcCCCCCEEECcC
Confidence 577888888887765 454432 2678888888887753221 344578888888888888
Q ss_pred CC-cc--cccccccCC------CCcceEEeecCCCccccch--hhcCCCCCCEEeeCCCCCcc-ccCccccCCCCCcEee
Q 002187 600 SV-II--EIPTNIEKL------LHLKYLNLSCQMEIERLPE--TLCELYNLERLNVDSCSNLR-ELPQGIGKLRKLMHLE 667 (955)
Q Consensus 600 ~~-~~--~lp~~i~~L------~~Lr~L~L~~~~~i~~LP~--~i~~L~~Lq~LdL~~~~~l~-~lp~~i~~L~~L~~L~ 667 (955)
|. +. .+|..++++ ++|++|+|++|. ++.+|. .++++++|++|++++|. +. .+| .+..+++|++|+
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEE
Confidence 87 76 478877776 888888888888 778888 88888888888888887 55 788 788888888888
Q ss_pred CCCCCCCcccccCCCCCCC-CCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhcc-------CC
Q 002187 668 NDQTDSLRYLPVGIGELIS-LRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELE-------KK 739 (955)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~-------~~ 739 (955)
+++| .+..+|..++.+++ |+.|++..+.... .+..+..+ .+.+|+.+.+.+..- .......+. .+
T Consensus 360 L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~-~l~~L~~L~Ls~N~l----~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 360 LAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK-SVSVMSAIDFSYNEI----GSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp CCSS-EEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTT-CSSCEEEEECCSSCT----TTTTTCSSCTTCSSCCCC
T ss_pred CCCC-ccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhc-ccCccCEEECcCCcC----CCcchhhhcccccccccC
Confidence 8888 45578888888888 8888877665442 22221111 122344444433211 111112222 56
Q ss_pred CCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhccc-------ccccEE
Q 002187 740 KNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSL-------TNLRVL 812 (955)
Q Consensus 740 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l-------~~L~~L 812 (955)
.+|+.|+++.|.+..... ..+..+++|+.|++++|.+.. +++.++... ++|+.|
T Consensus 433 ~~L~~L~Ls~N~l~~lp~-----------------~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 433 INVSSINLSNNQISKFPK-----------------ELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp CCEEEEECCSSCCCSCCT-----------------HHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEE
T ss_pred CCCCEEECcCCccCcCCH-----------------HHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEE
Confidence 689999999886653221 123457899999999999886 744444433 399999
Q ss_pred EEeCCCCCCcCCC-CC--CCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccc
Q 002187 813 HLRWCSNCEHLPP-LG--KLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVK 889 (955)
Q Consensus 813 ~L~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~ 889 (955)
+|++| .++.+|. +. .+++|+.|+|++|. +..++.. ...+++|+.|+++++..+......+..|
T Consensus 494 ~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 494 DLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp ECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccccCcccccCh
Confidence 99999 5667876 54 89999999998876 4333322 2368999999998877665555566677
Q ss_pred cccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCCc
Q 002187 890 GEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPIL 933 (955)
Q Consensus 890 ~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 933 (955)
..+..+++|+.|++++|. ++.+|..+. ++|+.|++++|+..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTC
T ss_pred HHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCc
Confidence 788899999999999997 699998765 89999999999753
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=8e-26 Score=270.21 Aligned_cols=363 Identities=15% Similarity=0.139 Sum_probs=239.4
Q ss_pred CceEEEEEEccCCC-CcchhhhccCCCceEEEecCCCc-------h----------------------------------
Q 002187 539 KKVFHLMLTLHRGA-SVPISIWDNVKGLRSLLVKSDEY-------S---------------------------------- 576 (955)
Q Consensus 539 ~~~r~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~-------~---------------------------------- 576 (955)
.+|+.+.+..+.+. .+|..+. .+++|++|+++++.. .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 47888888887765 3666666 999999999988732 0
Q ss_pred ----------------------------------hhHHHHHHHhcCCCcccEEEcCCCCccc------------------
Q 002187 577 ----------------------------------WSIEVLRQLFDKLTCLRTLKLDGSVIIE------------------ 604 (955)
Q Consensus 577 ----------------------------------~~~~~l~~~~~~l~~Lr~L~L~~~~~~~------------------ 604 (955)
.+.. +|..|.++++|++|+|++|.+..
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 0111 23457889999999999999988
Q ss_pred cccccc--CCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCcc--ccCccccCC------CCCcEeeCCCCCCC
Q 002187 605 IPTNIE--KLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLR--ELPQGIGKL------RKLMHLENDQTDSL 674 (955)
Q Consensus 605 lp~~i~--~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~l 674 (955)
+|..++ ++++|++|+|++|.....+|..++++++|++|++++|..+. .+|..+.++ ++|++|++++| .+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cC
Confidence 999999 99999999999998667899999999999999999997344 589888876 99999999998 45
Q ss_pred ccccc--CCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCC-CCcEEEEeec
Q 002187 675 RYLPV--GIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKN-LIELGLHFDH 751 (955)
Q Consensus 675 ~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~ 751 (955)
..+|. .++.+++|+.|++..+......+ .+. .+++|+.|.+.+.. .. .....+..+++ |+.|++++|.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~---~l~~L~~L~L~~N~----l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG---SEIKLASLNLAYNQ----IT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE---EEEEESEEECCSSE----EE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhC---CCCCCCEEECCCCc----cc-cccHhhhhhcccCcEEEccCCc
Confidence 58898 89999999999888776552222 333 33344444443311 00 11233556667 8888888776
Q ss_pred CCCCCcccccCCC--C------chh-hHHHHhhhCC-------CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEe
Q 002187 752 IRDGDEEQAGRRE--N------EED-EDERLLEALG-------PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLR 815 (955)
Q Consensus 752 l~~~~~~~~~~~~--~------~~~-~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~ 815 (955)
+...+.. ..... . ..+ .....+..+. .+++|+.|++++|.+.. +++.++..+++|+.|+|+
T Consensus 389 l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 389 LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLM 465 (636)
T ss_dssp CSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECC
T ss_pred Ccccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECC
Confidence 5532211 00000 0 000 0001112233 44577777777777665 533444457777777777
Q ss_pred CCCCCCcCCC--CC-------CCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccccccccccccc
Q 002187 816 WCSNCEHLPP--LG-------KLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVT 886 (955)
Q Consensus 816 ~~~~~~~l~~--l~-------~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~ 886 (955)
+| .++.+|. +. .+++|+.|+|++|. +..++..+.. ..+++|+.|+++++ .+..
T Consensus 466 ~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N-~l~~----- 527 (636)
T 4eco_A 466 GN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA----------TTLPYLVGIDLSYN-SFSK----- 527 (636)
T ss_dssp SS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST----------TTCTTCCEEECCSS-CCSS-----
T ss_pred CC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhh----------ccCCCcCEEECCCC-CCCC-----
Confidence 77 3445554 11 22377777776665 4434332210 15778888888876 3333
Q ss_pred ccccccccCcccceeeec------cCcCCCCCCCCCCCCCCcCeEEEecCCCcccc
Q 002187 887 AVKGEIRIMPRLSSLSIV------YCPKLKALPDHLLQKTTLQRLSIFSCPILKKT 936 (955)
Q Consensus 887 ~~~~~~~~~~~L~~L~i~------~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 936 (955)
.|..+..+++|+.|+++ +|.....+|..+..+++|++|++++|.. ..+
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 34466778888888884 3444567788888888888888888865 444
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.2e-25 Score=271.42 Aligned_cols=379 Identities=18% Similarity=0.151 Sum_probs=189.5
Q ss_pred CceEEEEEEccCCC-CcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcc-ccccc-ccCCCCc
Q 002187 539 KKVFHLMLTLHRGA-SVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVII-EIPTN-IEKLLHL 615 (955)
Q Consensus 539 ~~~r~l~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~-~lp~~-i~~L~~L 615 (955)
..++++.+..+.+. .+|..+...+++|++|++.++..... .+..|..++.|++|+|++|.+. .+|.. ++++++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA---VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC---CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc---cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 35556666555543 34444442346666666666543211 2233566666666666666654 55544 6666666
Q ss_pred ceEEeecCCCcc-ccchhhcCCC-CCCEEeeCCCCCccccCccccC--CCCCcEeeCCCCCCCcccccCCCCCCCCCccc
Q 002187 616 KYLNLSCQMEIE-RLPETLCELY-NLERLNVDSCSNLRELPQGIGK--LRKLMHLENDQTDSLRYLPVGIGELISLRRVS 691 (955)
Q Consensus 616 r~L~L~~~~~i~-~LP~~i~~L~-~Lq~LdL~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 691 (955)
++|+|++|. +. .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..++++++|+.|+
T Consensus 346 ~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 346 KVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 666666665 43 5666666665 6666666666533345555544 55666666666644445555666666666666
Q ss_pred eeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHH
Q 002187 692 KLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDE 771 (955)
Q Consensus 692 ~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 771 (955)
+..+......+ ..+..+++|+.+.+.+..-. ......+..+++|+.|+++.|.+.+..
T Consensus 425 Ls~N~l~~~~p---~~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~--------------- 482 (768)
T 3rgz_A 425 LSFNYLSGTIP---SSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEI--------------- 482 (768)
T ss_dssp CCSSEEESCCC---GGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCC---------------
T ss_pred CcCCcccCccc---HHHhcCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccCcC---------------
Confidence 55443332111 22333444444444332111 111123445556666666665443221
Q ss_pred HHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccc
Q 002187 772 RLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEF 850 (955)
Q Consensus 772 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~ 850 (955)
+..+..+++|+.|++++|.... ..|.|+..+++|+.|+|++|.....+|. ++.+++|+.|+|++|.-...++..+
T Consensus 483 --p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 483 --PSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp --CGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred --CHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 2234445566666666665543 2255666666666666666643334443 5556666666665543111111111
Q ss_pred cCCc--------------------------------------------------------------cC------------
Q 002187 851 LGVE--------------------------------------------------------------RD------------ 856 (955)
Q Consensus 851 ~~~~--------------------------------------------------------------~~------------ 856 (955)
.... +.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 0000 00
Q ss_pred --------CCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEe
Q 002187 857 --------TDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIF 928 (955)
Q Consensus 857 --------~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~ 928 (955)
.....++.+++|+.|+++++. ..+..|..++.+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~------l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHND------ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCc------cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 000012234445555444442 233455677788888888888887445788888888888888888
Q ss_pred cCCCccc----------------------------c-cccCCCccccCCCCCcc
Q 002187 929 SCPILKK----------------------------T-KERGEDWPKIRHIPNIL 953 (955)
Q Consensus 929 ~c~~l~~----------------------------~-~~~~~~~~~i~hi~~i~ 953 (955)
+|+--.. . ...+++|++|+|+|++.
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 7732111 0 24577999999999874
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.3e-24 Score=238.65 Aligned_cols=303 Identities=16% Similarity=0.201 Sum_probs=198.5
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+++|++|.+.++....+. . +..+++|++|++++|.+..+|. +.++++|++|++++|. ++.+| .+.++++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~----~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ----G-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT----T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCS
T ss_pred hcccccEEEEeCCccccch----h-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCC
Confidence 4556666666655433221 1 5556666666666666666555 6666666666666665 55555 366666666
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
+|++++|. +..+|. +..+++|++|++++|.....++. +..+++|+.|++..+.... +..+..+++|+.+.+.
T Consensus 114 ~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 114 ELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-----VTPIANLTDLYSLSLN 185 (347)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECT
T ss_pred EEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-----chhhccCCCCCEEEcc
Confidence 66666665 555554 56666666666666644443332 5666666666555443322 1124445555555554
Q ss_pred CCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCC
Q 002187 721 GLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPK 800 (955)
Q Consensus 721 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 800 (955)
+..- ... ..+..+++|+.|+++.|.+... ..+..+++|+.|++++|.... + +
T Consensus 186 ~n~l-~~~-----~~~~~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~L~~L~l~~n~l~~--~-~ 237 (347)
T 4fmz_A 186 YNQI-EDI-----SPLASLTSLHYFTAYVNQITDI-------------------TPVANMTRLNSLKIGNNKITD--L-S 237 (347)
T ss_dssp TSCC-CCC-----GGGGGCTTCCEEECCSSCCCCC-------------------GGGGGCTTCCEEECCSSCCCC--C-G
T ss_pred CCcc-ccc-----ccccCCCccceeecccCCCCCC-------------------chhhcCCcCCEEEccCCccCC--C-c
Confidence 4321 111 1155678889999988854432 125567899999999998877 5 3
Q ss_pred ChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccccccc
Q 002187 801 NWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELE 880 (955)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~ 880 (955)
. +..+++|+.|++++| .++.++.+..+++|++|++++|. +..++ ....+|+|+.|++++|. +.
T Consensus 238 ~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSC-CC
T ss_pred c-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEECcCCc-CC
Confidence 3 778999999999999 66677888999999999998885 44331 12378999999999984 33
Q ss_pred ccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCC
Q 002187 881 EWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCP 931 (955)
Q Consensus 881 ~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 931 (955)
.. .+..+..+++|+.|++++|+ +..+|+ +..+++|++|++++|+
T Consensus 301 ~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NE-----DMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GG-----GHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred Cc-----ChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 22 22356789999999999998 777766 7889999999999986
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=6.4e-25 Score=266.34 Aligned_cols=321 Identities=13% Similarity=0.125 Sum_probs=218.0
Q ss_pred HHHhcCCCcccEEEcCCCCccc------------------cccccc--CCCCcceEEeecCCCccccchhhcCCCCCCEE
Q 002187 583 RQLFDKLTCLRTLKLDGSVIIE------------------IPTNIE--KLLHLKYLNLSCQMEIERLPETLCELYNLERL 642 (955)
Q Consensus 583 ~~~~~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~L 642 (955)
|..|.++++|++|+|++|.+.. +|..++ ++++|++|+|++|.....+|..+++|++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 3447788899999999998877 888887 99999999999887677888889999999999
Q ss_pred eeCCCCCcc--ccCccccCCC-------CCcEeeCCCCCCCccccc--CCCCCCCCCccceeEecCccCCccCccccccC
Q 002187 643 NVDSCSNLR--ELPQGIGKLR-------KLMHLENDQTDSLRYLPV--GIGELISLRRVSKLVVGGGYDKACSLGSLKKL 711 (955)
Q Consensus 643 dL~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L 711 (955)
+|++|..+. .+|..+.+++ +|++|++++| .+..+|. .++++++|+.|++..+.... +..+..+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp~~~~L 594 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRH-----LEAFGTN 594 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCB-----CCCCCTT
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCccc-----chhhcCC
Confidence 999886344 4777666554 8899998888 4458888 78888888888877665442 2244555
Q ss_pred CCCCCceEeCCCCCCCHhhhHHhhccCCCC-CCcEEEEeecCCCCCcccccCCCC--------chhhHHHHhhh----CC
Q 002187 712 NLLRQCRIRGLGDFSDVGEARRAELEKKKN-LIELGLHFDHIRDGDEEQAGRREN--------EEDEDERLLEA----LG 778 (955)
Q Consensus 712 ~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~----l~ 778 (955)
++|+.|.+.+..- . .....+..+++ |+.|+|+.|.+...+.. ...... ..+.....++. +.
T Consensus 595 ~~L~~L~Ls~N~l-~----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 595 VKLTDLKLDYNQI-E----EIPEDFCAFTDQVEGLGFSHNKLKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp SEESEEECCSSCC-S----CCCTTSCEECTTCCEEECCSSCCCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred CcceEEECcCCcc-c----cchHHHhhccccCCEEECcCCCCCcCchh-hhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 5555555544221 1 12233556667 88888887766532211 000000 00000000111 11
Q ss_pred --CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-C--------CCCCCcceeeecCCCCceEeC
Q 002187 779 --PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-L--------GKLPSLEDLEILGMGSVKRVG 847 (955)
Q Consensus 779 --~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l--------~~l~~L~~L~L~~~~~l~~i~ 847 (955)
..++|+.|++++|.+.. +|+.++..+++|+.|+|++| .+..+|. + ++|++|+.|+|++|. +..++
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp 744 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLS 744 (876)
T ss_dssp TCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCC
T ss_pred cccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-Cccch
Confidence 33588999999988876 73334447899999999988 5556665 1 234489999998875 55444
Q ss_pred ccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeecc------CcCCCCCCCCCCCCCC
Q 002187 848 NEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVY------CPKLKALPDHLLQKTT 921 (955)
Q Consensus 848 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~------c~~l~~lp~~~~~l~~ 921 (955)
..+.. ..+|+|+.|+|+++ .+.. .|..+..+++|+.|++++ |.....+|..+..+++
T Consensus 745 ~~l~~----------~~l~~L~~L~Ls~N-~L~~------lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 745 DDFRA----------TTLPYLSNMDVSYN-CFSS------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp GGGST----------TTCTTCCEEECCSS-CCSS------CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred HHhhh----------ccCCCcCEEEeCCC-CCCc------cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 33220 16889999999987 3443 344677899999999977 5445678888999999
Q ss_pred cCeEEEecCCCccccc
Q 002187 922 LQRLSIFSCPILKKTK 937 (955)
Q Consensus 922 L~~L~l~~c~~l~~~~ 937 (955)
|+.|++++|.. ..++
T Consensus 808 L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CCEEECCSSCC-CBCC
T ss_pred CCEEECCCCCC-CccC
Confidence 99999999865 5554
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=7e-24 Score=253.64 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=118.5
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~ 617 (955)
..++++.+..+.+..++...+..+++|++|++.++....+ .+..|.++++|++|+|++|.+..+ |..++++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI---EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc---CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 6889999999988877775565899999999998875433 244588999999999999999887 788999999999
Q ss_pred EEeecCCCccccc-hhhcCCCCCCEEeeCCCCCcc--ccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCC
Q 002187 618 LNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLR--ELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLR 688 (955)
Q Consensus 618 L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 688 (955)
|+|++|. +..+| ..++++++|++|++++|. +. .+|..+.++++|++|++++|......|..++.+++|+
T Consensus 109 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 109 LVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp EECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred EEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 9999998 87776 679999999999999998 55 4789999999999999999854433445566666555
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.4e-23 Score=239.88 Aligned_cols=325 Identities=19% Similarity=0.211 Sum_probs=172.8
Q ss_pred ceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEE
Q 002187 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLN 619 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~ 619 (955)
.++.+.+..+.+..++. +. .+++|++|++.++...... . +.++++|++|++++|.+..++. ++++++|++|+
T Consensus 47 ~l~~L~l~~~~i~~l~~-~~-~l~~L~~L~Ls~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-VE-YLNNLTQINFSNNQLTDIT----P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp TCCEEECCSSCCCCCTT-GG-GCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred cccEEecCCCCCccCcc-hh-hhcCCCEEECCCCccCCch----h-hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 45555555555544432 22 5666666666665533221 1 5566666666666666655554 66666666666
Q ss_pred eecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCcc
Q 002187 620 LSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGY 699 (955)
Q Consensus 620 L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (955)
+++|. ++.+|. +.++++|++|++++|. +..+| .+..+++|++|+++++ +..++. ++.+++|+.|++..+....
T Consensus 119 L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCcCCC
Confidence 66665 555554 5666666666666655 44444 2455555555555321 222221 4444445444444333221
Q ss_pred CCccCccccccCCCCCCceEeCCCCCCCHhh----------------hHHhhccCCCCCCcEEEEeecCCCCCcccccCC
Q 002187 700 DKACSLGSLKKLNLLRQCRIRGLGDFSDVGE----------------ARRAELEKKKNLIELGLHFDHIRDGDEEQAGRR 763 (955)
Q Consensus 700 ~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~----------------~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~ 763 (955)
+..+..+++|+.+.+.+..-...... .....+..+++|+.|++++|.+.+.
T Consensus 192 -----~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-------- 258 (466)
T 1o6v_A 192 -----ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-------- 258 (466)
T ss_dssp -----CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--------
T ss_pred -----ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc--------
Confidence 12233333333333332211000000 0001233445555555555433221
Q ss_pred CCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCc
Q 002187 764 ENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSV 843 (955)
Q Consensus 764 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 843 (955)
..+..+++|+.|++++|.... + +. +..+++|+.|++++| .++.++.++.+++|+.|++++|. +
T Consensus 259 -----------~~~~~l~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 259 -----------APLSGLTKLTELKLGANQISN--I-SP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp -----------GGGTTCTTCSEEECCSSCCCC--C-GG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-C
T ss_pred -----------hhhhcCCCCCEEECCCCccCc--c-cc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-C
Confidence 124556667777777766655 4 22 556677777777776 45555556667777777776664 2
Q ss_pred eEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcC
Q 002187 844 KRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQ 923 (955)
Q Consensus 844 ~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~ 923 (955)
..+.. ...+++|+.|++++| .+.... .+..+++|+.|++++|+ +..+++ +..+++|+
T Consensus 322 ~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 378 (466)
T 1o6v_A 322 SDISP-------------VSSLTKLQRLFFYNN-KVSDVS-------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRIT 378 (466)
T ss_dssp SCCGG-------------GGGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCC
T ss_pred CCchh-------------hccCccCCEeECCCC-ccCCch-------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCC
Confidence 22111 236777888887776 344331 35678888888888886 555554 67788888
Q ss_pred eEEEecCCC
Q 002187 924 RLSIFSCPI 932 (955)
Q Consensus 924 ~L~l~~c~~ 932 (955)
.|++++|+-
T Consensus 379 ~L~l~~n~~ 387 (466)
T 1o6v_A 379 QLGLNDQAW 387 (466)
T ss_dssp EEECCCEEE
T ss_pred EEeccCCcc
Confidence 888887753
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1e-24 Score=266.96 Aligned_cols=277 Identities=16% Similarity=0.132 Sum_probs=211.2
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcC-CCcccEEEcCCCCcc-cccccccCCCCcc
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDK-LTCLRTLKLDGSVII-EIPTNIEKLLHLK 616 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~-l~~Lr~L~L~~~~~~-~lp~~i~~L~~Lr 616 (955)
.+++.+.+..+.+...... . .+++|++|.+.++..... ++..+.. ++.|++|+|++|.+. .+|..++++++|+
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~l~~~---ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAENKFTGE---IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp SSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSSEEEES---CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred CCCCEEECCCCcccCccCc-c-ccCCCCEEECcCCccCCc---cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 5788888888776532222 2 789999999999864311 2222434 599999999999987 5789999999999
Q ss_pred eEEeecCCCcc-ccchh-hcCCCCCCEEeeCCCCCccccCccccCCC-CCcEeeCCCCCCCcccccCCCC--CCCCCccc
Q 002187 617 YLNLSCQMEIE-RLPET-LCELYNLERLNVDSCSNLRELPQGIGKLR-KLMHLENDQTDSLRYLPVGIGE--LISLRRVS 691 (955)
Q Consensus 617 ~L~L~~~~~i~-~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i~~--l~~L~~L~ 691 (955)
+|+|++|. +. .+|.. ++++++|++|++++|.....+|..+..++ +|++|++++|.....+|..+.. +++|+.|+
T Consensus 322 ~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 322 SLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp EEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred EEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 99999998 65 89976 99999999999999984448999999987 9999999999766677877776 88999998
Q ss_pred eeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHH
Q 002187 692 KLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDE 771 (955)
Q Consensus 692 ~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 771 (955)
+..+......+ ..+..+++|+.|.+.+.. ........+..+++|+.|+++.|.+.+..
T Consensus 401 L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--------------- 458 (768)
T 3rgz_A 401 LQNNGFTGKIP---PTLSNCSELVSLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLEGEI--------------- 458 (768)
T ss_dssp CCSSEEEEECC---GGGGGCTTCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCCSCC---------------
T ss_pred CCCCccccccC---HHHhcCCCCCEEECcCCc----ccCcccHHHhcCCCCCEEECCCCcccCcC---------------
Confidence 87765543222 345556666666665432 11122245677899999999999765422
Q ss_pred HHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeC
Q 002187 772 RLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVG 847 (955)
Q Consensus 772 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~ 847 (955)
+..+..+++|+.|++++|.... ..|.++..+++|+.|+|++|.....+|. ++.+++|++|+|++|.-...++
T Consensus 459 --p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 459 --PQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp --CGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred --CHHHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 3456678999999999999875 3388999999999999999965556775 8899999999999987333344
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.6e-23 Score=250.55 Aligned_cols=151 Identities=16% Similarity=0.084 Sum_probs=120.4
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~ 617 (955)
..++++.+..+.+..++...+..+++|++|++.++....+ .+..|.++++|++|+|++|.+..+ |..++++++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI---HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee---ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 6889999999998877655555999999999999874332 345589999999999999998776 678999999999
Q ss_pred EEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCCCCCCCcccccCCCCCCCCC--cccee
Q 002187 618 LNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLENDQTDSLRYLPVGIGELISLR--RVSKL 693 (955)
Q Consensus 618 L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~--~L~~~ 693 (955)
|++++|. ++.+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+ .|++.
T Consensus 110 L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 110 LFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred eeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 9999998 8877 5779999999999999998 66652 3344599999999999854333455678888888 44443
Q ss_pred E
Q 002187 694 V 694 (955)
Q Consensus 694 ~ 694 (955)
.
T Consensus 188 ~ 188 (606)
T 3t6q_A 188 G 188 (606)
T ss_dssp T
T ss_pred C
Confidence 3
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1e-23 Score=255.81 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=126.3
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~ 617 (955)
.+++++.+..+.+..++...+..+++|++|++.++..... .+..|.++++|++|+|++|.+..+|. .++++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC---CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc---CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 6899999999998887776666999999999998864332 34558899999999999999999986 5999999999
Q ss_pred EEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCccccc-CC--CCCCCCCcccee
Q 002187 618 LNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPV-GI--GELISLRRVSKL 693 (955)
Q Consensus 618 L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i--~~l~~L~~L~~~ 693 (955)
|+|++|. +..+| ..++++++|++|++++|......|..+.++++|++|++++|. +..++. .+ ..+++|+.|++.
T Consensus 102 L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 102 LHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECT
T ss_pred EECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECC
Confidence 9999998 88777 579999999999999998444456678899999999999984 444443 22 356888888877
Q ss_pred EecCc
Q 002187 694 VVGGG 698 (955)
Q Consensus 694 ~~~~~ 698 (955)
.+...
T Consensus 180 ~n~l~ 184 (680)
T 1ziw_A 180 SNQIK 184 (680)
T ss_dssp TCCCC
T ss_pred CCccc
Confidence 66544
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-23 Score=235.47 Aligned_cols=304 Identities=19% Similarity=0.162 Sum_probs=217.3
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccc-hhhcCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLP-ETLCELYN 638 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~ 638 (955)
.+++++.|.+.++....+ .+..|..+++|++|+|++|.+..++. .++++++|++|+|++|. ++.+| ..++++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESEE---CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccCCceEEEecCCchhhC---ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCC
Confidence 467788888877653322 23346778888888888888877653 77888888888888887 66664 45788888
Q ss_pred CCEEeeCCCCCccccCccc-cCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCc
Q 002187 639 LERLNVDSCSNLRELPQGI-GKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQC 717 (955)
Q Consensus 639 Lq~LdL~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 717 (955)
|++|++++|. +..+|..+ .++++|++|++++|......|..++.+++|+.|++..+.... . .+..++.|+.+
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~---~~~~l~~L~~L 191 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSLIPSLFHA 191 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB---C---CGGGCTTCSEE
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc---c---cccccccccee
Confidence 8888888887 77777764 778888888888874333334457788888888776655443 1 23344455554
Q ss_pred eEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 002187 718 RIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNV 797 (955)
Q Consensus 718 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 797 (955)
.+.+.. + ..+....+|+.|++++|.+... ....+++|+.|++++|....
T Consensus 192 ~l~~n~-l--------~~~~~~~~L~~L~l~~n~l~~~--------------------~~~~~~~L~~L~l~~n~l~~-- 240 (390)
T 3o6n_A 192 NVSYNL-L--------STLAIPIAVEELDASHNSINVV--------------------RGPVNVELTILKLQHNNLTD-- 240 (390)
T ss_dssp ECCSSC-C--------SEEECCSSCSEEECCSSCCCEE--------------------ECCCCSSCCEEECCSSCCCC--
T ss_pred eccccc-c--------cccCCCCcceEEECCCCeeeec--------------------cccccccccEEECCCCCCcc--
Confidence 444321 1 1233446889999988854321 11235799999999998876
Q ss_pred CCCChhcccccccEEEEeCCCCCCcC-C-CCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecc
Q 002187 798 VPKNWVMSLTNLRVLHLRWCSNCEHL-P-PLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWS 875 (955)
Q Consensus 798 ~~p~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~ 875 (955)
+.++..+++|+.|+|++| .++.+ | .++.+++|+.|+|+++. +..++... ..+|+|+.|++++
T Consensus 241 --~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 241 --TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLSH 304 (390)
T ss_dssp --CGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTCCEEECCS
T ss_pred --cHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCCCEEECCC
Confidence 468889999999999999 44443 3 38899999999998876 55554321 2689999999999
Q ss_pred cccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCC
Q 002187 876 MKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 876 ~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 932 (955)
+ .+..+. ..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+-
T Consensus 305 n-~l~~~~------~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 305 N-HLLHVE------RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp S-CCCCCG------GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred C-cceecC------ccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 8 455443 256789999999999997 77776 67789999999999864
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1e-23 Score=252.18 Aligned_cols=367 Identities=16% Similarity=0.076 Sum_probs=228.3
Q ss_pred EEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEee
Q 002187 543 HLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLS 621 (955)
Q Consensus 543 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~ 621 (955)
.+......+..+|..+. +++++|++.++....+ .+..|.++++|++|+|++|.+..+ |..|+++++|++|+|+
T Consensus 15 ~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKIL---KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCSSCCTTSC---TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCcccCCCCCC---CCcCEEECCCCCcCEe---ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 34455555666776543 7899999999875433 233489999999999999999887 5679999999999999
Q ss_pred cCCCcccc-chhhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCCCCCCCc-ccccCCCCCCCCCccceeEecCc
Q 002187 622 CQMEIERL-PETLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLENDQTDSLR-YLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 622 ~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~-~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
+|. ++.+ |..++++++|++|++++|. +..+| ..+.++++|++|++++|.... .+|..++++++|++|++..+...
T Consensus 89 ~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 999 7776 7889999999999999998 76666 679999999999999995433 57899999999999998877655
Q ss_pred cCCccCccccccCCC-CCCceEeCCC--CCC------------------CHhhhHHhhccCCCCCCcEEEEeecCCCCCc
Q 002187 699 YDKACSLGSLKKLNL-LRQCRIRGLG--DFS------------------DVGEARRAELEKKKNLIELGLHFDHIRDGDE 757 (955)
Q Consensus 699 ~~~~~~l~~L~~L~~-L~~l~i~~~~--~~~------------------~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~ 757 (955)
...+..+..+.+++. +..+.+.... .+. .........+..+++|+.+.+..+.+.....
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 433444555555543 1223222211 000 0011222233344444444444332211100
Q ss_pred cc------ccCCCC---------chhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCc
Q 002187 758 EQ------AGRREN---------EEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEH 822 (955)
Q Consensus 758 ~~------~~~~~~---------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~ 822 (955)
.. ...... ...........+..+++|+.|+++++.... + | ++..+++|+.|++++|.. +.
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l-~-~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--L-E-DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC--C-C-CCCTTCCCSEEEEESCCC-SS
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh--h-h-hccccccCCEEEcccccC-cc
Confidence 00 000000 000001112225667888899998888766 5 5 777888899999988844 77
Q ss_pred CCCCCCCCCcceeeecCCCCceEeCccccCCccCC--------------CCccccCCCccceeeeccccccccccccccc
Q 002187 823 LPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDT--------------DGSSVIAFPKLKELRFWSMKELEEWDFVTAV 888 (955)
Q Consensus 823 l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~--------------~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~ 888 (955)
+|.+ .+++|+.|++.+|..+..+... ...... .......+++|+.|+++++. +.. .
T Consensus 322 lp~~-~l~~L~~L~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~------~ 391 (606)
T 3vq2_A 322 FPTL-DLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII------M 391 (606)
T ss_dssp CCCC-CCSSCCEEEEESCSSCEECCCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE------E
T ss_pred cccC-CCCccceeeccCCcCccchhhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc------c
Confidence 8877 8888888888877544332100 000000 00001234445555554442 222 2
Q ss_pred ccccccCcccceeeeccCcCCCCCC-CCCCCCCCcCeEEEecCCC
Q 002187 889 KGEIRIMPRLSSLSIVYCPKLKALP-DHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 889 ~~~~~~~~~L~~L~i~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 932 (955)
|..+..+++|+.|++++|......| ..+..+++|+.|++++|..
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 2345667777777777776333333 3566777777777777754
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=245.70 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=92.3
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
.+++++.+..+.+..++...+..+++|++|++.++..... .+..|.++++|++|+|++|.+..+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL---DISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE---EGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCc---ChHHhhcccCCCEEecCCCceeecCcc--ccCCccEE
Confidence 5778888888877766654444788888888888764332 234477888888888888888888776 78888888
Q ss_pred EeecCCCccc--cchhhcCCCCCCEEeeCCCCCccccCccccCCCCC--cEeeCCCCCC
Q 002187 619 NLSCQMEIER--LPETLCELYNLERLNVDSCSNLRELPQGIGKLRKL--MHLENDQTDS 673 (955)
Q Consensus 619 ~L~~~~~i~~--LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 673 (955)
+|++|. ++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|..
T Consensus 96 ~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 96 DLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred eccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccc
Confidence 888887 664 56778888888888888877 544 345666666 7777777643
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=244.74 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=118.4
Q ss_pred EEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEe
Q 002187 542 FHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNL 620 (955)
Q Consensus 542 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L 620 (955)
+++.+..+.+..+|..+. ++|++|++.++..... .+..|.++++|++|+|++|.+..+ |..++++++|++|+|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISEL---WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCC---CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCccccc---ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 456777777777776654 8999999999975433 345589999999999999999887 778999999999999
Q ss_pred ecCCCccccchhhcCCCCCCEEeeCCCCCccc--cCccccCCCCCcEeeCCCCCCCcccccCCCCCCCC--CccceeEec
Q 002187 621 SCQMEIERLPETLCELYNLERLNVDSCSNLRE--LPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISL--RRVSKLVVG 696 (955)
Q Consensus 621 ~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~~~~~ 696 (955)
++|. ++.+|.. .+++|++|++++|. +.. +|..+.++++|++|++++|. +.. ..++.+++| +.|++..+.
T Consensus 77 s~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 77 SHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECT
T ss_pred CCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccc
Confidence 9999 9999987 89999999999998 654 67899999999999999984 332 346677777 888877765
Q ss_pred C
Q 002187 697 G 697 (955)
Q Consensus 697 ~ 697 (955)
.
T Consensus 150 l 150 (520)
T 2z7x_B 150 T 150 (520)
T ss_dssp T
T ss_pred c
Confidence 5
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=6e-23 Score=236.56 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=209.1
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.++++++|.+.++....+ +. +..+++|++|+|++|.+..+|. ++++++|++|++++|. +..+|. ++++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l----~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI----DG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCC----TT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred HhccccEEecCCCCCccC----cc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCC
Confidence 567899999998875443 22 7889999999999999999887 9999999999999998 888887 99999999
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
+|++++|. +..+|. +.++++|++|++++| .+..+| .++.+++|+.|.+.. ... .+..+..+++|+.|.+.
T Consensus 116 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~-~~~-----~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 116 GLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGN-QVT-----DLKPLANLTTLERLDIS 185 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE-SCC-----CCGGGTTCTTCCEEECC
T ss_pred EEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCC-ccc-----CchhhccCCCCCEEECc
Confidence 99999997 888875 899999999999998 455555 488999999998753 221 23446777778777776
Q ss_pred CCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccc-cCCCCc--hhhHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 002187 721 GLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQA-GRRENE--EDEDERLLEALGPPPNLKELRIHEYRGRRNV 797 (955)
Q Consensus 721 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 797 (955)
+..- ... ..+..+++|+.|+++.|.+.+..+... ...... ........+.+..+++|+.|++++|....
T Consensus 186 ~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-- 257 (466)
T 1o6v_A 186 SNKV-SDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-- 257 (466)
T ss_dssp SSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--
T ss_pred CCcC-CCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc--
Confidence 5431 211 236678899999998886654321000 000000 00000001123334455555555554443
Q ss_pred CCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccc
Q 002187 798 VPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMK 877 (955)
Q Consensus 798 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 877 (955)
. +. +..+++|+.|++++| .+..++.++.+++|+.|++++|. +..+. ....+|+|+.|++++|
T Consensus 258 ~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~L~~n- 319 (466)
T 1o6v_A 258 L-AP-LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDIS-------------PISNLKNLTYLTLYFN- 319 (466)
T ss_dssp C-GG-GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCG-------------GGGGCTTCSEEECCSS-
T ss_pred c-hh-hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCch-------------hhcCCCCCCEEECcCC-
Confidence 2 11 444555555555555 33344445555555555555443 21111 1235677777777776
Q ss_pred cccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCC
Q 002187 878 ELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 878 ~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 932 (955)
.+.... .+..+++|+.|++++|+ +..+| .+..+++|+.|++++|+.
T Consensus 320 ~l~~~~-------~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 320 NISDIS-------PVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCSCCG-------GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred cCCCch-------hhccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCcc
Confidence 333322 14578888888888885 66665 467788888888888754
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.2e-23 Score=239.98 Aligned_cols=365 Identities=16% Similarity=0.143 Sum_probs=244.0
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~ 617 (955)
.+++++.+..+.+..++...+..+++|++|.+.++..... ..+..|.++++|++|+|++|.+..+ |..++++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE--ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce--ECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 6889999998888776554445899999999988864211 1133478899999999999998776 778999999999
Q ss_pred EEeecCCCccc-cchh--hcCCCCCCEEeeCCCCCcccc-Ccc-ccCCCCCcEeeCCCCCCCcccccCCCCC--CCCCcc
Q 002187 618 LNLSCQMEIER-LPET--LCELYNLERLNVDSCSNLREL-PQG-IGKLRKLMHLENDQTDSLRYLPVGIGEL--ISLRRV 690 (955)
Q Consensus 618 L~L~~~~~i~~-LP~~--i~~L~~Lq~LdL~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l--~~L~~L 690 (955)
|+|++|. ++. .|.. ++++++|++|++++|. +..+ |.. +.++++|++|++++|......|..+..+ .+|+.|
T Consensus 108 L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 108 LTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred EeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 9999998 654 4554 8889999999999988 5555 555 7889999999999885544555556555 455555
Q ss_pred ceeEecCccCCccCc-----cccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCC
Q 002187 691 SKLVVGGGYDKACSL-----GSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRREN 765 (955)
Q Consensus 691 ~~~~~~~~~~~~~~l-----~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 765 (955)
++..+.........+ ..+..++.|+.+.+.+..-....... ........+|+.|.++.+..............
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 263 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD- 263 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC-
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccccchhhhcc-
Confidence 554443322111111 11223344554555442211111111 11222346778888776643321110000000
Q ss_pred chhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcC-C-CCCCCCCcceeeecCCCCc
Q 002187 766 EEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHL-P-PLGKLPSLEDLEILGMGSV 843 (955)
Q Consensus 766 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l 843 (955)
........+ ..++|+.|++++|.... .+|.++..+++|+.|+|++| .++.+ | .++.+++|++|+|++|. +
T Consensus 264 ---~~~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l 335 (455)
T 3v47_A 264 ---PDNFTFKGL-EASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNF-L 335 (455)
T ss_dssp ---CCTTTTGGG-TTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred ---Ccccccccc-cccCceEEEecCccccc--cchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCc-c
Confidence 000001111 24799999999999877 55888999999999999999 44444 4 48899999999999886 5
Q ss_pred eEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCC-CCCCCCc
Q 002187 844 KRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDH-LLQKTTL 922 (955)
Q Consensus 844 ~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~-~~~l~~L 922 (955)
..+....+ ..+++|+.|+++++ .+... .|..+..+++|+.|++++|. ++.+|.. +..+++|
T Consensus 336 ~~~~~~~~-----------~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 336 GSIDSRMF-----------ENLDKLEVLDLSYN-HIRAL-----GDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSL 397 (455)
T ss_dssp CEECGGGG-----------TTCTTCCEEECCSS-CCCEE-----CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTC
T ss_pred CCcChhHh-----------cCcccCCEEECCCC-ccccc-----ChhhccccccccEEECCCCc-cccCCHhHhccCCcc
Confidence 55543322 36899999999998 34333 23467889999999999996 7888864 5789999
Q ss_pred CeEEEecCCCccc
Q 002187 923 QRLSIFSCPILKK 935 (955)
Q Consensus 923 ~~L~l~~c~~l~~ 935 (955)
+.|++++|+--..
T Consensus 398 ~~L~l~~N~l~~~ 410 (455)
T 3v47_A 398 QKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCBCCC
T ss_pred cEEEccCCCcccC
Confidence 9999998865433
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.1e-23 Score=245.41 Aligned_cols=305 Identities=18% Similarity=0.144 Sum_probs=219.1
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccch-hhcCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPE-TLCELYN 638 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~ 638 (955)
.+++++.|.+.++....+ .+.+|..+++|++|+|++|.+..+| ..++.+++|++|+|++|. ++.+|. .++++++
T Consensus 49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCC
Confidence 467788888877654332 2344677888888888888887765 478888888888888888 776664 4688888
Q ss_pred CCEEeeCCCCCccccCccc-cCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCc
Q 002187 639 LERLNVDSCSNLRELPQGI-GKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQC 717 (955)
Q Consensus 639 Lq~LdL~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 717 (955)
|++|+|++|. +..+|..+ .++++|++|++++|......|..++.+++|+.|++..+.... . .+..+..|+.+
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~l~~L~~L 197 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSLIPSLFHA 197 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGGCTTCSEE
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhhhhhhhhh
Confidence 8888888887 77777764 788888888888884433444467888888888776655433 1 23344445554
Q ss_pred eEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 002187 718 RIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNV 797 (955)
Q Consensus 718 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 797 (955)
.+.+.. + ..+....+|+.|++++|.+.... ...+++|+.|++++|.+..
T Consensus 198 ~l~~n~-l--------~~l~~~~~L~~L~ls~n~l~~~~--------------------~~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 198 NVSYNL-L--------STLAIPIAVEELDASHNSINVVR--------------------GPVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp ECCSSC-C--------SEEECCTTCSEEECCSSCCCEEE--------------------CSCCSCCCEEECCSSCCCC--
T ss_pred hcccCc-c--------ccccCCchhheeeccCCcccccc--------------------cccCCCCCEEECCCCCCCC--
Confidence 444321 1 12334567899999888543211 1123689999999998876
Q ss_pred CCCChhcccccccEEEEeCCCCCCcCC-CCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccc
Q 002187 798 VPKNWVMSLTNLRVLHLRWCSNCEHLP-PLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSM 876 (955)
Q Consensus 798 ~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 876 (955)
+.++..+++|+.|+|++|......| .++.+++|+.|+|++|. +..++... ..+|+|+.|++++|
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLSHN 311 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------------SCCTTCCEEECCSS
T ss_pred --ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------------ccCCCCcEEECCCC
Confidence 6788999999999999994333334 38899999999998876 55553321 26899999999998
Q ss_pred ccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCC
Q 002187 877 KELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 877 ~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 932 (955)
. +..+ |..+..+++|+.|++++|+ +..+| +..+++|+.|++++|+-
T Consensus 312 ~-l~~i------~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 312 H-LLHV------ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp C-CCCC------GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred C-CCcc------CcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 3 4433 3356789999999999997 77776 66789999999999874
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.1e-22 Score=224.98 Aligned_cols=301 Identities=18% Similarity=0.187 Sum_probs=235.7
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
.+++++.+..+.+..++. +. .+++|++|.+.++....+.. +..+++|++|++++|.+..+| .++++++|++|
T Consensus 44 ~~L~~L~l~~~~i~~~~~-~~-~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG-IE-YLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSSCCCCCTT-GG-GCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred ccccEEEEeCCccccchh-hh-hcCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 578889998888776553 44 89999999999987544322 889999999999999998875 69999999999
Q ss_pred EeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCc
Q 002187 619 NLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 619 ~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
++++|. +..+|. +..+++|++|++++|..+..++ .+..+++|++|++++|. +..++. ++.+++|+.|++..+...
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred ECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc
Confidence 999999 888887 9999999999999997566655 48999999999999984 455554 788999999988766544
Q ss_pred cCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCC
Q 002187 699 YDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALG 778 (955)
Q Consensus 699 ~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 778 (955)
. +..+..++.|+.+.+.+..- ... ..+..+++|+.|++++|.+... ..+.
T Consensus 191 ~-----~~~~~~l~~L~~L~l~~n~l-~~~-----~~~~~~~~L~~L~l~~n~l~~~-------------------~~~~ 240 (347)
T 4fmz_A 191 D-----ISPLASLTSLHYFTAYVNQI-TDI-----TPVANMTRLNSLKIGNNKITDL-------------------SPLA 240 (347)
T ss_dssp C-----CGGGGGCTTCCEEECCSSCC-CCC-----GGGGGCTTCCEEECCSSCCCCC-------------------GGGT
T ss_pred c-----cccccCCCccceeecccCCC-CCC-----chhhcCCcCCEEEccCCccCCC-------------------cchh
Confidence 3 33366677777766665322 111 1166789999999999865432 1267
Q ss_pred CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCC
Q 002187 779 PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTD 858 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 858 (955)
.+++|+.|++++|.... + ..+..+++|+.|++++| .++.++.++.+++|+.|++++|. +.......
T Consensus 241 ~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-------- 306 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD--I--NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEV-------- 306 (347)
T ss_dssp TCTTCCEEECCSSCCCC--C--GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHH--------
T ss_pred cCCCCCEEECCCCccCC--C--hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhH--------
Confidence 78999999999998876 4 46788999999999999 67777889999999999999886 33222211
Q ss_pred CccccCCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 859 GSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 859 ~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
...+|+|+.|++++|+ +..... +..+++|+.|++++|+
T Consensus 307 ---l~~l~~L~~L~L~~n~-l~~~~~-------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 ---IGGLTNLTTLFLSQNH-ITDIRP-------LASLSKMDSADFANQV 344 (347)
T ss_dssp ---HHTCTTCSEEECCSSS-CCCCGG-------GGGCTTCSEESSSCC-
T ss_pred ---hhccccCCEEEccCCc-cccccC-------hhhhhccceeehhhhc
Confidence 2368999999999985 444322 5689999999999997
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=249.91 Aligned_cols=279 Identities=20% Similarity=0.194 Sum_probs=178.4
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~ 617 (955)
.+++++.++.+.+..+....+..+++|++|++.++.... .+.+..|.++++|++|+|++|.+..+ |..++++++|++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 789999999999887655555599999999999884311 11144589999999999999999876 789999999999
Q ss_pred EEeecCCCccc-cchh--hcCCCCCCEEeeCCCCCcccc--CccccCCCCCcEeeCCCCCCCcccccCCCCC--CCCCcc
Q 002187 618 LNLSCQMEIER-LPET--LCELYNLERLNVDSCSNLREL--PQGIGKLRKLMHLENDQTDSLRYLPVGIGEL--ISLRRV 690 (955)
Q Consensus 618 L~L~~~~~i~~-LP~~--i~~L~~Lq~LdL~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l--~~L~~L 690 (955)
|+|++|. +.. +|.. ++++++|++|+|++|. +..+ +..+.++++|++|++++|......|..++.+ ++|+.|
T Consensus 102 L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 102 LRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp EECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred eeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 9999998 654 6655 8999999999999998 5554 3568999999999999885444445555555 566666
Q ss_pred ceeEecCccCCccCcccccc-CC--CCCCceEeCCC-----------------------------------CC-------
Q 002187 691 SKLVVGGGYDKACSLGSLKK-LN--LLRQCRIRGLG-----------------------------------DF------- 725 (955)
Q Consensus 691 ~~~~~~~~~~~~~~l~~L~~-L~--~L~~l~i~~~~-----------------------------------~~------- 725 (955)
++..+......+..+..+.+ +. .|+.+.+.+.. .+
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 55544332211111111110 00 01111111100 00
Q ss_pred ----------------CCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEe
Q 002187 726 ----------------SDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIH 789 (955)
Q Consensus 726 ----------------~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 789 (955)
..........+..+++|+.|+|+.|.+.... ...+..+++|+.|+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-----------------~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-----------------DEAFYGLDNLQVLNLS 322 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-----------------TTTTTTCSSCCEEEEE
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-----------------hHHhcCCCCCCEEECC
Confidence 0000011122344556666666655433211 2245566777777777
Q ss_pred eecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCC
Q 002187 790 EYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMG 841 (955)
Q Consensus 790 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 841 (955)
+|.... +.|.++..+++|+.|+|++| .+..++. ++.+++|+.|+|++|.
T Consensus 323 ~N~l~~--~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 323 YNLLGE--LYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCCCSC--CCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCc--cCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 777655 44666777777777777777 4444443 6667777777776654
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=4.8e-23 Score=246.37 Aligned_cols=351 Identities=14% Similarity=0.075 Sum_probs=210.6
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~ 622 (955)
+.........+|..+. +++++|++.++....+ .+..|.++++|++|+|++|.+..+ |..|+++++|++|+|++
T Consensus 17 ~~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 17 YNCENLGLNEIPGTLP---NSTECLEFSFNVLPTI---QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp EECTTSCCSSCCTTSC---TTCCEEECTTCCCSEE---CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EECCCCCcccCcCCCC---CcCcEEEccCCccCcC---ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 3444445555676654 4789999999875433 244589999999999999998876 77899999999999999
Q ss_pred CCCcccc-chhhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCccc-ccCCCCCCCCCccceeEecCcc
Q 002187 623 QMEIERL-PETLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYL-PVGIGELISLRRVSKLVVGGGY 699 (955)
Q Consensus 623 ~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~ 699 (955)
|. +..+ |..++++++|++|++++|. +..+ |..+.++++|++|++++|. +..+ +..+..+++|+.|++..+....
T Consensus 91 n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 91 NP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CC-CSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred Cc-ccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc
Confidence 99 6655 7789999999999999998 7766 6778999999999999994 4443 2334459999999987765543
Q ss_pred CCccCccccccCCCCCC--ceEeCCC--CCC----------------------------------------------CH-
Q 002187 700 DKACSLGSLKKLNLLRQ--CRIRGLG--DFS----------------------------------------------DV- 728 (955)
Q Consensus 700 ~~~~~l~~L~~L~~L~~--l~i~~~~--~~~----------------------------------------------~~- 728 (955)
..+. .+..+.+|+. +.+.+.. .+. ..
T Consensus 168 ~~~~---~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 168 LSKE---DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp ECHH---HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred cChh---hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 2122 2333333331 2211110 000 00
Q ss_pred ----------------------hhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeE
Q 002187 729 ----------------------GEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKEL 786 (955)
Q Consensus 729 ----------------------~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 786 (955)
.......+..+++|+.|++++|.+.. ++..+..+++|++|
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------lp~~l~~l~~L~~L 306 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE------------------LPSGLVGLSTLKKL 306 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC------------------CCSSCCSCTTCCEE
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC------------------CChhhcccccCCEE
Confidence 00000113344555555555554332 22345556667777
Q ss_pred EEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeC---ccccCCccC-----
Q 002187 787 RIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVG---NEFLGVERD----- 856 (955)
Q Consensus 787 ~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~---~~~~~~~~~----- 856 (955)
++++|.... ++|..+..+++|+.|++++|.....+|. ++.+++|++|+++++. +..+. ..+......
T Consensus 307 ~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 307 VLSANKFEN--LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp ECTTCCCSB--GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEEC
T ss_pred ECccCCcCc--CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEEC
Confidence 776666555 4355566666666666666644334443 5666666666666554 22221 000000000
Q ss_pred -------CCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEec
Q 002187 857 -------TDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFS 929 (955)
Q Consensus 857 -------~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~ 929 (955)
........+++|+.|+++++. +.... .+..+..+++|+.|++++|..-...|..+..+++|++|++++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKD----AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCC-EECCT----TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcc----cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 000011234555555555542 21111 111255677788888877763334455677778888888887
Q ss_pred CCC
Q 002187 930 CPI 932 (955)
Q Consensus 930 c~~ 932 (955)
|+-
T Consensus 459 n~l 461 (606)
T 3t6q_A 459 NHF 461 (606)
T ss_dssp CBC
T ss_pred CCC
Confidence 753
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=246.18 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=114.4
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~ 617 (955)
..++++.+..+.+..++...+..+++|++|++.++....+ .+..|.++++|++|+|++|.+..+| ..++++.+|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc---CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5789999999988776665555899999999998864332 2345889999999999999988875 67999999999
Q ss_pred EEeecCCCccccch-hhcCCCCCCEEeeCCCCCccc--cCccccCCCCCcEeeCCCCCCCcccccCCCCCCCC
Q 002187 618 LNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRE--LPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISL 687 (955)
Q Consensus 618 L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 687 (955)
|++++|. ++.+|. .++++++|++|++++|. +.. +|..+.++++|++|++++|......|..++.+++|
T Consensus 105 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 105 LVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp EECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999998 888875 68999999999999987 554 78889999999999999884332233344444444
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=235.05 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=106.4
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~ 622 (955)
+......+..+|..+. ++++.|++.++....+ .+..|.++++|++|+|++|.+..+ |..++++++|++|+|++
T Consensus 16 v~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIP---TETRLLDLGKNRIKTL---NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EECCSCCCSSCCSCCC---TTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCcCcCCCCCC---CCCcEEECCCCccceE---CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 3344444555565443 5788888888764332 233478888899999998888776 67788889999999988
Q ss_pred CCCccccchh-hcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 623 QMEIERLPET-LCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 623 ~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
|. ++.+|.. +.++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|++..+..
T Consensus 90 n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 90 NR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp SC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred Cc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 88 8888754 68888999999988883333466788888999999888854444455678888888887765543
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.1e-23 Score=244.90 Aligned_cols=377 Identities=18% Similarity=0.171 Sum_probs=219.3
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~ 617 (955)
..++++.+..+.+..++...+..+++|++|++.++..... .+..|.++++|++|+|++|.+..+|.. ++++++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI---EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc---ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 5788888888887766544444888999999988864432 234478888899999999888877654 888899999
Q ss_pred EEeecCCCccc--cchhhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeE
Q 002187 618 LNLSCQMEIER--LPETLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLV 694 (955)
Q Consensus 618 L~L~~~~~i~~--LP~~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 694 (955)
|+|++|. ++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|+.|++..
T Consensus 103 L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 9999888 764 46678888899999998887566676 4678888888888888755445666666665555554433
Q ss_pred ec------------------------CccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhc--------------
Q 002187 695 VG------------------------GGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAEL-------------- 736 (955)
Q Consensus 695 ~~------------------------~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l-------------- 736 (955)
+. ..............+..|+.+.+.+..-...........+
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 22 1110000000000011111111111000000000000000
Q ss_pred ---------------------------------------------cCCCCCCcEEEEeecCCCCCcccc---cCCCC---
Q 002187 737 ---------------------------------------------EKKKNLIELGLHFDHIRDGDEEQA---GRREN--- 765 (955)
Q Consensus 737 ---------------------------------------------~~~~~L~~L~L~~~~l~~~~~~~~---~~~~~--- 765 (955)
....+|+.|+++.|.+...+.... .....
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 011234444444443322211100 00000
Q ss_pred ch-hhHHHH---hhhCCCCCCCCeEEEeeecCCCCCCCC--ChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeec
Q 002187 766 EE-DEDERL---LEALGPPPNLKELRIHEYRGRRNVVPK--NWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEIL 838 (955)
Q Consensus 766 ~~-~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~ 838 (955)
.. ...... ...+..+++|+.|++++|.... +++ ..+..+++|+.|+|++| .++.+|. ++.+++|++|+++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECC
Confidence 00 000111 2235667888888888887765 421 34667888888888888 5566765 6778888888888
Q ss_pred CCCCceEeCccccCCcc---CCC---CccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCC
Q 002187 839 GMGSVKRVGNEFLGVER---DTD---GSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKAL 912 (955)
Q Consensus 839 ~~~~l~~i~~~~~~~~~---~~~---~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 912 (955)
+|. +..++......-. ... ......+|+|++|+++++ .++.++. ...+++|+.|++++|. ++.+
T Consensus 419 ~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~Ls~N~-l~~~ 488 (549)
T 2z81_A 419 STG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKISRNQ-LKSV 488 (549)
T ss_dssp TSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEECCSSC-CCCC
T ss_pred CCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-------cccCccCCEEecCCCc-cCCc
Confidence 776 4333221110000 000 000125778888888877 4443322 3468889999999886 6666
Q ss_pred CC-CCCCCCCcCeEEEecCCC
Q 002187 913 PD-HLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 913 p~-~~~~l~~L~~L~l~~c~~ 932 (955)
|. .+..+++|+.|++++|+-
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCB
T ss_pred CHHHHhcCcccCEEEecCCCc
Confidence 54 477888999999988874
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.6e-22 Score=239.00 Aligned_cols=350 Identities=16% Similarity=0.105 Sum_probs=188.3
Q ss_pred EEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEe
Q 002187 542 FHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNL 620 (955)
Q Consensus 542 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L 620 (955)
+++.+..+.+..+|..+. ++|++|++.++....+ .+..|.++++|++|+|++|.+..+ |..++++++|++|+|
T Consensus 34 ~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISEL---RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCC---CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCCCC---CCcCEEECCCCCcccc---ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 566666666666665443 6777777777764322 223467777777777777777766 556777777777777
Q ss_pred ecCCCccccchhhcCCCCCCEEeeCCCCCccccC--ccccCCCCCcEeeCCCCCCCcccccCCCCCCCC--CccceeEec
Q 002187 621 SCQMEIERLPETLCELYNLERLNVDSCSNLRELP--QGIGKLRKLMHLENDQTDSLRYLPVGIGELISL--RRVSKLVVG 696 (955)
Q Consensus 621 ~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~~~~~ 696 (955)
++|. ++.+|.. .+++|++|++++|. +..+| ..+.++++|++|++++|. +.. ..+..+++| +.|++..+.
T Consensus 108 s~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESS
T ss_pred CCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeeccc
Confidence 7777 7777765 67777777777776 55543 567777777777777763 222 234455555 666665544
Q ss_pred C--ccCCccCccccc-----------------------cCCCCCCceEeCC----------------------------C
Q 002187 697 G--GYDKACSLGSLK-----------------------KLNLLRQCRIRGL----------------------------G 723 (955)
Q Consensus 697 ~--~~~~~~~l~~L~-----------------------~L~~L~~l~i~~~----------------------------~ 723 (955)
. ....+..+..+. .+.+|+.+.+... .
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 3 211111111111 1122222222211 0
Q ss_pred CCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccc-----cCCCC------------ch-hhHHHHhh----------
Q 002187 724 DFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQA-----GRREN------------EE-DEDERLLE---------- 775 (955)
Q Consensus 724 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~-----~~~~~------------~~-~~~~~~~~---------- 775 (955)
-.......... .....+|+.|+++.|.+.+..+... ..... .. ........
T Consensus 261 l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 00000000001 1122377788888776653221100 00000 00 00000000
Q ss_pred --------hCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC----CCCCCCcceeeecCCCCc
Q 002187 776 --------ALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP----LGKLPSLEDLEILGMGSV 843 (955)
Q Consensus 776 --------~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~L~~~~~l 843 (955)
....+++|++|++++|.... ..|.++..+++|+.|+|++| .++.++. ++.+++|++|++++|. +
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l 415 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-L 415 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-C
T ss_pred CCCcccccCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-C
Confidence 01456788888888887766 33777888888999999888 5555542 7788888888888776 3
Q ss_pred eE-eCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccC-cccceeeeccCcCCCCCCCCCCCCCC
Q 002187 844 KR-VGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIM-PRLSSLSIVYCPKLKALPDHLLQKTT 921 (955)
Q Consensus 844 ~~-i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~i~~c~~l~~lp~~~~~l~~ 921 (955)
.. ++...+ ..+++|+.|+++++. +... . ...+ ++|+.|++++|. ++.+|..+..+++
T Consensus 416 ~~~~~~~~~-----------~~l~~L~~L~l~~n~-l~~~-----~---~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~ 474 (562)
T 3a79_B 416 NSHAYDRTC-----------AWAESILVLNLSSNM-LTGS-----V---FRCLPPKVKVLDLHNNR-IMSIPKDVTHLQA 474 (562)
T ss_dssp BSCCSSCCC-----------CCCTTCCEEECCSSC-CCGG-----G---GSSCCTTCSEEECCSSC-CCCCCTTTTSSCC
T ss_pred CCccChhhh-----------cCcccCCEEECCCCC-CCcc-----h---hhhhcCcCCEEECCCCc-CcccChhhcCCCC
Confidence 32 332211 134556666555542 2111 1 1112 355555555552 4455544444555
Q ss_pred cCeEEEecC
Q 002187 922 LQRLSIFSC 930 (955)
Q Consensus 922 L~~L~l~~c 930 (955)
|++|++++|
T Consensus 475 L~~L~L~~N 483 (562)
T 3a79_B 475 LQELNVASN 483 (562)
T ss_dssp CSEEECCSS
T ss_pred CCEEECCCC
Confidence 555555544
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.5e-22 Score=239.36 Aligned_cols=342 Identities=15% Similarity=0.101 Sum_probs=234.3
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
..++++.+..+.+..++...+..+++|++|++.++....+ .+..|.++++|++|+|++|.+..+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL---DFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE---CTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC---CHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEE
Confidence 6899999999999887765555999999999999875433 244589999999999999999999987 89999999
Q ss_pred EeecCCCccccc--hhhcCCCCCCEEeeCCCCCccccCccccCCCCC--cEeeCCCCCC--CcccccCCCC---------
Q 002187 619 NLSCQMEIERLP--ETLCELYNLERLNVDSCSNLRELPQGIGKLRKL--MHLENDQTDS--LRYLPVGIGE--------- 683 (955)
Q Consensus 619 ~L~~~~~i~~LP--~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--l~~~p~~i~~--------- 683 (955)
+|++|. ++.+| ..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 127 ~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 127 DLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp ECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred ECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 999999 88765 789999999999999987 554 245556666 9999888744 2333333332
Q ss_pred -----------------CCCCCcc-------------------------------------------------------c
Q 002187 684 -----------------LISLRRV-------------------------------------------------------S 691 (955)
Q Consensus 684 -----------------l~~L~~L-------------------------------------------------------~ 691 (955)
+++|+.| +
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 2223333 2
Q ss_pred eeEecCccCCccCccc--cccCCCCCCceEeCCC-CCCCHhhhHHhh---------------------ccCCCCCCcEEE
Q 002187 692 KLVVGGGYDKACSLGS--LKKLNLLRQCRIRGLG-DFSDVGEARRAE---------------------LEKKKNLIELGL 747 (955)
Q Consensus 692 ~~~~~~~~~~~~~l~~--L~~L~~L~~l~i~~~~-~~~~~~~~~~~~---------------------l~~~~~L~~L~L 747 (955)
+..+......+..+-. ..+++.|+.+.+.... .++ ....... ...+++|+.|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS--KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSC--HHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecC--hhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 2222211101111100 0122222111111100 000 0000000 134566666666
Q ss_pred EeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCC--CChhcccccccEEEEeCCCCCCcCCC
Q 002187 748 HFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVP--KNWVMSLTNLRVLHLRWCSNCEHLPP 825 (955)
Q Consensus 748 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~l~~ 825 (955)
+.|.+.+ ..+..+..+++|+.|++++|.+.. ++ |..+..+++|+.|++++|.....+|.
T Consensus 361 ~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 361 TQNVFTD-----------------SVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CSSCCCT-----------------TTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred CCCcccc-----------------chhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 6664432 124467788999999999998876 42 35577899999999999954444665
Q ss_pred --CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCC-CccceeeecccccccccccccccccccccCcccceee
Q 002187 826 --LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAF-PKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLS 902 (955)
Q Consensus 826 --l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~f-p~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~ 902 (955)
+..+++|+.|++++|. +. .... ..+ ++|+.|+++++ .++.++ ..+..+++|+.|+
T Consensus 422 ~~~~~l~~L~~L~l~~n~-l~---~~~~-----------~~l~~~L~~L~L~~N-~l~~ip------~~~~~l~~L~~L~ 479 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNM-LT---GSVF-----------RCLPPKVKVLDLHNN-RIMSIP------KDVTHLQALQELN 479 (562)
T ss_dssp CCCCCCTTCCEEECCSSC-CC---GGGG-----------SSCCTTCSEEECCSS-CCCCCC------TTTTSSCCCSEEE
T ss_pred hhhcCcccCCEEECCCCC-CC---cchh-----------hhhcCcCCEEECCCC-cCcccC------hhhcCCCCCCEEE
Confidence 7889999999999886 22 1111 134 69999999998 565443 3566899999999
Q ss_pred eccCcCCCCCCCC-CCCCCCcCeEEEecCCCc
Q 002187 903 IVYCPKLKALPDH-LLQKTTLQRLSIFSCPIL 933 (955)
Q Consensus 903 i~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l 933 (955)
+++|. ++.+|.. +..+++|+.|++++|+--
T Consensus 480 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 480 VASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSC-CCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCC-CCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 99996 8899987 889999999999998753
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=242.58 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=98.6
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~ 617 (955)
..++++.+..+.+..++...+..+++|++|++.++..... .+..|.++++|++|++++|.+..+|. .++++++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc---CHhhhcCccccccccccccccccCCCccccccccccE
Confidence 5788999988888777666565899999999998864332 23458899999999999999988875 6899999999
Q ss_pred EEeecCCCccc--cchhhcCCCCCCEEeeCCCCCcccc-CccccCCCCC----cEeeCCCC
Q 002187 618 LNLSCQMEIER--LPETLCELYNLERLNVDSCSNLREL-PQGIGKLRKL----MHLENDQT 671 (955)
Q Consensus 618 L~L~~~~~i~~--LP~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L----~~L~l~~~ 671 (955)
|++++|. +.. +|..++++++|++|++++|. +..+ |..+..+++| ++|++++|
T Consensus 129 L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 129 LNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp EECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred EecCCCc-cceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCC
Confidence 9999998 664 78889999999999999987 5544 3445555555 45555544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.1e-22 Score=226.13 Aligned_cols=306 Identities=19% Similarity=0.167 Sum_probs=192.1
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+++|++|++.++..... + .+..+++|++|+|++|.+..+| ++.+++|++|++++|. ++.+| ++++++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~----~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM----T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCCC----T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCC
T ss_pred HcCCCCEEEccCCCcccC----h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCC
Confidence 566666777666654332 1 2566677777777777766664 6667777777777766 66664 66677777
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
+|++++|. +..+| +..+++|++|++++| .++.+| ++.+++|+.|++..+.... .+ .+..+++|+.+.+.
T Consensus 110 ~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT----KL-DVTPQTQLTTLDCS 178 (457)
T ss_dssp EEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC----CC-CCTTCTTCCEEECC
T ss_pred EEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc----cc-ccccCCcCCEEECC
Confidence 77777765 55554 666777777777666 344443 5666666666655443222 11 23344445544444
Q ss_pred CCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCC
Q 002187 721 GLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPK 800 (955)
Q Consensus 721 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 800 (955)
+.. +... .+..+++|+.|++++|.+... .+..+++|+.|++++|.+.. + |
T Consensus 179 ~n~-l~~l------~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls~N~l~~--i-p 228 (457)
T 3bz5_A 179 FNK-ITEL------DVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCSSNKLTE--I-D 228 (457)
T ss_dssp SSC-CCCC------CCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECCSSCCSC--C-C
T ss_pred CCc-ccee------ccccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECcCCcccc--c-C
Confidence 321 1110 145677888999888865431 25667899999999998877 6 5
Q ss_pred ChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCcc---ccCCccCCCCccccCCCccceeeecccc
Q 002187 801 NWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNE---FLGVERDTDGSSVIAFPKLKELRFWSMK 877 (955)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~---~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 877 (955)
+..+++|+.|++++| .++.+| ++.+++|+.|++.++. ++.+.-. +.+.. ....+++|+.|++++|+
T Consensus 229 --~~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~~~------~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYF------QAEGCRKIKELDVTHNT 297 (457)
T ss_dssp --CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTCC-CSCCCCTTCTTCCEE------ECTTCTTCCCCCCTTCT
T ss_pred --ccccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCCC-CCEEECCCCccCCcc------cccccccCCEEECCCCc
Confidence 678899999999998 555554 5567777666664432 3332211 11111 12368999999999997
Q ss_pred cccccccccc--cccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCC
Q 002187 878 ELEEWDFVTA--VKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCP 931 (955)
Q Consensus 878 ~L~~~~~~~~--~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 931 (955)
.+..++.... ..-.+..+++|+.|++++|. ++.+| +..+++|+.|++++|.
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 6655443100 00024567888999998886 77775 7889999999998874
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=6.1e-22 Score=216.28 Aligned_cols=233 Identities=24% Similarity=0.302 Sum_probs=160.6
Q ss_pred cCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEe
Q 002187 587 DKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHL 666 (955)
Q Consensus 587 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L 666 (955)
.....+++|+|++|.+..+|..++++++|++|+|++|. ++.+|..++++++|++|+|++|. +..+|..+.++++|++|
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLREL 155 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEE
Confidence 45688999999999999999999999999999999999 88999999999999999999998 77999999999999999
Q ss_pred eCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEE
Q 002187 667 ENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELG 746 (955)
Q Consensus 667 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 746 (955)
++++|.....+|..++... . . ..+..+++|+.|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~-----------~----------------------------~-------~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTD-----------A----------------------------S-------GEHQGLVNLQSLR 189 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC----------------------------------------C-------CCEEESTTCCEEE
T ss_pred ECCCCCCccccChhHhhcc-----------c----------------------------h-------hhhccCCCCCEEE
Confidence 9999866666665443200 0 0 0122334455555
Q ss_pred EEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-
Q 002187 747 LHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP- 825 (955)
Q Consensus 747 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~- 825 (955)
+++| .+.. + |.++..+++|+.|+|++| .++.+|.
T Consensus 190 L~~n-----------------------------------------~l~~--l-p~~l~~l~~L~~L~L~~N-~l~~l~~~ 224 (328)
T 4fcg_A 190 LEWT-----------------------------------------GIRS--L-PASIANLQNLKSLKIRNS-PLSALGPA 224 (328)
T ss_dssp EEEE-----------------------------------------CCCC--C-CGGGGGCTTCCEEEEESS-CCCCCCGG
T ss_pred CcCC-----------------------------------------CcCc--c-hHhhcCCCCCCEEEccCC-CCCcCchh
Confidence 5554 4333 3 444455555555555555 2223332
Q ss_pred CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeecc
Q 002187 826 LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVY 905 (955)
Q Consensus 826 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~ 905 (955)
++.+++|++|+|++|.....++.. ...+++|+.|++++|..+..+ |..+..+++|+.|+|++
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~------------~~~l~~L~~L~L~~n~~~~~~------p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPI------------FGGRAPLKRLILKDCSNLLTL------PLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCC------------TTCCCCCCEEECTTCTTCCBC------CTTGGGCTTCCEEECTT
T ss_pred hccCCCCCEEECcCCcchhhhHHH------------hcCCCCCCEEECCCCCchhhc------chhhhcCCCCCEEeCCC
Confidence 445555555555554432222211 124566666666665433333 22567888999999999
Q ss_pred CcCCCCCCCCCCCCCCcCeEEEecC
Q 002187 906 CPKLKALPDHLLQKTTLQRLSIFSC 930 (955)
Q Consensus 906 c~~l~~lp~~~~~l~~L~~L~l~~c 930 (955)
|+.+..+|..+..+++|+.+.+..+
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCchhhccHHHhhccCceEEeCCHH
Confidence 9888899998988999998888743
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=3e-21 Score=220.46 Aligned_cols=307 Identities=17% Similarity=0.180 Sum_probs=228.2
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
.+++++.+..+.+..+| .+. .+++|++|++.++....+ + +..+++|++|++++|.+..+| ++++++|++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~-~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIE-KLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGG-GCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCCcccCh-hhc-ccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 57889999998888765 454 899999999999975543 2 789999999999999998885 9999999999
Q ss_pred EeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCc
Q 002187 619 NLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 619 ~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
++++|. ++.+| ++++++|++|++++|. +..+| +..+++|++|++++|..+..+ .++.+++|+.|++..+...
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999998 88887 8999999999999998 77775 889999999999999766665 4788999999998776654
Q ss_pred cCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCC
Q 002187 699 YDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALG 778 (955)
Q Consensus 699 ~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 778 (955)
. +. +..++.|+.+.+.+.. +... .+..+++|+.|++++|.+.+. + +.
T Consensus 184 ~-----l~-l~~l~~L~~L~l~~N~-l~~~------~l~~l~~L~~L~Ls~N~l~~i-------------------p-~~ 230 (457)
T 3bz5_A 184 E-----LD-VSQNKLLNRLNCDTNN-ITKL------DLNQNIQLTFLDCSSNKLTEI-------------------D-VT 230 (457)
T ss_dssp C-----CC-CTTCTTCCEEECCSSC-CSCC------CCTTCTTCSEEECCSSCCSCC-------------------C-CT
T ss_pred e-----ec-cccCCCCCEEECcCCc-CCee------ccccCCCCCEEECcCCccccc-------------------C-cc
Confidence 3 11 5556666666655432 1111 367789999999999965431 1 56
Q ss_pred CCCCCCeEEEeeecCCCCCCCCChhcccc-------cccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCcccc
Q 002187 779 PPPNLKELRIHEYRGRRNVVPKNWVMSLT-------NLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFL 851 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~-------~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~ 851 (955)
.+++|+.|++++|.... +++..+..+. +|+.|++++|.....+| ++.+++|+.|++++|..+..++....
T Consensus 231 ~l~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp TCTTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred ccCCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCC
Confidence 78999999999999887 5333333222 34455555554444454 57789999999999987776653221
Q ss_pred CCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCC
Q 002187 852 GVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALP 913 (955)
Q Consensus 852 ~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp 913 (955)
.. ....+..+|+|+.|+++++ .++.. .+..+++|+.|++++|. +..+|
T Consensus 308 ~L----~~L~l~~~~~L~~L~L~~N-~l~~l--------~l~~l~~L~~L~l~~N~-l~~l~ 355 (457)
T 3bz5_A 308 GI----TELDLSQNPKLVYLYLNNT-ELTEL--------DVSHNTKLKSLSCVNAH-IQDFS 355 (457)
T ss_dssp CC----SCCCCTTCTTCCEEECTTC-CCSCC--------CCTTCTTCSEEECCSSC-CCBCT
T ss_pred cc----eEechhhcccCCEEECCCC-ccccc--------ccccCCcCcEEECCCCC-CCCcc
Confidence 11 1112346677888877776 34432 25789999999999986 66554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.4e-22 Score=223.89 Aligned_cols=302 Identities=14% Similarity=0.093 Sum_probs=233.2
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~ 617 (955)
..++++.+..+.+..+|...+..+++|++|.+.++....+ .+..|..+++|++|+|++|.+..+| ..++++++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc---ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 5789999999988888888777899999999999875432 2334889999999999999998875 55899999999
Q ss_pred EEeecCCCccccchh-hcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEe
Q 002187 618 LNLSCQMEIERLPET-LCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 618 L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (955)
|+|++|. ++.+|.. ++++++|++|++++|. +..+ |..+..+++|++|++++| .+..+ .++.+++|+.|++..+
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGGGCTTCSEEECCSS
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCcc--ccccccccceeecccc
Confidence 9999998 9999977 4899999999999998 6665 455899999999999998 44444 3577888888877544
Q ss_pred cCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh
Q 002187 696 GGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLE 775 (955)
Q Consensus 696 ~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 775 (955)
.. ..+.....|+.+.+.+..- ... ......+|+.|++++|.+.+. +
T Consensus 197 ~l--------~~~~~~~~L~~L~l~~n~l-~~~------~~~~~~~L~~L~l~~n~l~~~-------------------~ 242 (390)
T 3o6n_A 197 LL--------STLAIPIAVEELDASHNSI-NVV------RGPVNVELTILKLQHNNLTDT-------------------A 242 (390)
T ss_dssp CC--------SEEECCSSCSEEECCSSCC-CEE------ECCCCSSCCEEECCSSCCCCC-------------------G
T ss_pred cc--------cccCCCCcceEEECCCCee-eec------cccccccccEEECCCCCCccc-------------------H
Confidence 32 2333344555555544221 110 112346899999999865432 3
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 776 ALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
.+..+++|+.|++++|.+.. .+|..+..+++|+.|+|++| .++.+|. .+.+|+|+.|+|++|. +..++..
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----- 313 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERN----- 313 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-----
T ss_pred HHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCcc-----
Confidence 56678999999999998876 55788899999999999999 5666665 6679999999999886 5444332
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
...+++|+.|++++++ +..+. +..+++|+.|++++|+
T Consensus 314 -------~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 -------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSC
T ss_pred -------ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCC
Confidence 2368999999999984 44432 4679999999999997
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.6e-22 Score=235.76 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=145.6
Q ss_pred EccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCC
Q 002187 547 TLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQME 625 (955)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~ 625 (955)
..+.+..+|..+. ++|++|++.++..... .+..|.++++|++|+|++|.+..++ ..++++++|++|+|++|.
T Consensus 13 ~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~- 85 (549)
T 2z81_A 13 RSRSFTSIPSGLT---AAMKSLDLSFNKITYI---GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH- 85 (549)
T ss_dssp TTSCCSSCCSCCC---TTCCEEECCSSCCCEE---CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred CCCccccccccCC---CCccEEECcCCccCcc---ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-
Confidence 3445555666543 7899999999875433 2334899999999999999998875 679999999999999999
Q ss_pred ccccchh-hcCCCCCCEEeeCCCCCccc--cCccccCCCCCcEeeCCCCCCCcccc-cCCCCCCCCCccceeEecCccCC
Q 002187 626 IERLPET-LCELYNLERLNVDSCSNLRE--LPQGIGKLRKLMHLENDQTDSLRYLP-VGIGELISLRRVSKLVVGGGYDK 701 (955)
Q Consensus 626 i~~LP~~-i~~L~~Lq~LdL~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~ 701 (955)
++.+|.. ++++++|++|++++|. +.. .|..+.++++|++|++++|..+..+| ..++.+++|+.|++..+......
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 8877765 9999999999999998 664 56789999999999999997567776 47899999999999877655322
Q ss_pred ccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCC
Q 002187 702 ACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRD 754 (955)
Q Consensus 702 ~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~ 754 (955)
+ ..+..+++|+.+.+..... .... ...+..+++|+.|+++.|.+.+
T Consensus 165 ~---~~l~~l~~L~~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 165 S---QSLKSIRDIHHLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp T---TTTTTCSEEEEEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTT
T ss_pred h---hhhhccccCceEecccCcc-cccc---hhhHhhcccccEEEccCCcccc
Confidence 2 3345555666666655332 1111 1223457788888888887665
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=240.80 Aligned_cols=348 Identities=14% Similarity=0.118 Sum_probs=216.3
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCC-cccc-cccccCCCCcceEEee
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSV-IIEI-PTNIEKLLHLKYLNLS 621 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~-~~~l-p~~i~~L~~Lr~L~L~ 621 (955)
+..+......+|. -.++|++|+++++....+ .+..|.++++|++|+|++|. +..+ |..++++++|++|+|+
T Consensus 9 ~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i---~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTV---TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEESCCCSSCCCS----SCTTCCEEEEESCCCCEE---CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEccCCCCCCCCC----CCCCcCEEECCCCcCCcc---ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 3444555665665 357999999999875433 23448999999999999995 5566 7889999999999999
Q ss_pred cCCCcccc-chhhcCCCCCCEEeeCCCCCccccCcc--ccCCCCCcEeeCCCCCCCcccc-cCCCCCCCCCccceeEecC
Q 002187 622 CQMEIERL-PETLCELYNLERLNVDSCSNLRELPQG--IGKLRKLMHLENDQTDSLRYLP-VGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 622 ~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~ 697 (955)
+|. +..+ |..++++++|++|+|++|.....+|.. +.++++|++|++++|......| ..++++++|++|++..+..
T Consensus 82 ~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 999 7765 888999999999999999833446665 8999999999999995433333 4689999999999887765
Q ss_pred ccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCC------CCCcEEEEeecCCCCCcccccCCCC------
Q 002187 698 GYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKK------NLIELGLHFDHIRDGDEEQAGRREN------ 765 (955)
Q Consensus 698 ~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~L~~~~l~~~~~~~~~~~~~------ 765 (955)
.......+..+.. .+|+.+.+....-... ....+..+. .|+.|+++.|.+.............
T Consensus 161 ~~~~~~~l~~l~~-~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 161 FLVCEHELEPLQG-KTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp CCCCSGGGHHHHH-CSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CeeCHHHcccccC-CccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 5433334444422 5566666654321110 001112222 4888999888654322211100000
Q ss_pred -------------chhhHHHHhhhCCC--CCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcC-C-CCCC
Q 002187 766 -------------EEDEDERLLEALGP--PPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHL-P-PLGK 828 (955)
Q Consensus 766 -------------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~ 828 (955)
...........+.. +++|+.|++++|.... ++|.++..+++|+.|+|++| .+..+ | .++.
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~ 312 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYN-KINKIADEAFYG 312 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESC-CCCEECTTTTTT
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCC-cCCCCChHHhcC
Confidence 00000000111221 3577778887777665 44666777777888888777 33333 3 2677
Q ss_pred CCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcC
Q 002187 829 LPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPK 908 (955)
Q Consensus 829 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 908 (955)
+++|++|+|++|. +..+.... ...+|+|+.|+++++ .+.... +..+..+++|+.|++++|.
T Consensus 313 l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~l~~L~~L~Ls~N~- 373 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELYSSN-----------FYGLPKVAYIDLQKN-HIAIIQ-----DQTFKFLEKLQTLDLRDNA- 373 (844)
T ss_dssp CSSCCEEEEESCC-CSCCCSCS-----------CSSCTTCCEEECCSC-CCCCCC-----SSCSCSCCCCCEEEEETCC-
T ss_pred CCCCCEEECCCCC-CCccCHHH-----------hcCCCCCCEEECCCC-CCCccC-----hhhhcCCCCCCEEECCCCC-
Confidence 7777777777665 32221111 225667777777765 333222 1235566677777777664
Q ss_pred CCCCCCCCCCCCCcCeEEEecC
Q 002187 909 LKALPDHLLQKTTLQRLSIFSC 930 (955)
Q Consensus 909 l~~lp~~~~~l~~L~~L~l~~c 930 (955)
++.++. +++|+.|.+++|
T Consensus 374 l~~i~~----~~~L~~L~l~~N 391 (844)
T 3j0a_A 374 LTTIHF----IPSIPDIFLSGN 391 (844)
T ss_dssp SCCCSS----CCSCSEEEEESC
T ss_pred CCcccC----CCCcchhccCCC
Confidence 444443 455556555554
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7.5e-22 Score=234.51 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=232.1
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~ 617 (955)
..++.+.+..+.+..+|...+..+++|++|++.++....+ .+..|..+++|++|+|++|.+..+|. .++++++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC---ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4678888888888888888777899999999999875433 23358999999999999999988765 5799999999
Q ss_pred EEeecCCCccccchh-hcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEe
Q 002187 618 LNLSCQMEIERLPET-LCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 618 L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (955)
|+|++|. ++.+|.. ++++++|++|+|++|. +..+ |..+..+++|++|++++| .+..++ ++.+++|+.|++..+
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTTCSEEECCSS
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhhhhhhhcccC
Confidence 9999998 9999976 5999999999999998 5555 456899999999999998 455554 567888888877544
Q ss_pred cCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh
Q 002187 696 GGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLE 775 (955)
Q Consensus 696 ~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 775 (955)
.. ..+.....|+.+.+.+..- ... ......+|+.|+|++|.+.+. .
T Consensus 203 ~l--------~~l~~~~~L~~L~ls~n~l-~~~------~~~~~~~L~~L~L~~n~l~~~-------------------~ 248 (597)
T 3oja_B 203 LL--------STLAIPIAVEELDASHNSI-NVV------RGPVNVELTILKLQHNNLTDT-------------------A 248 (597)
T ss_dssp CC--------SEEECCTTCSEEECCSSCC-CEE------ECSCCSCCCEEECCSSCCCCC-------------------G
T ss_pred cc--------ccccCCchhheeeccCCcc-ccc------ccccCCCCCEEECCCCCCCCC-------------------h
Confidence 32 2334444555555544221 110 011236899999999865432 3
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 776 ALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
.+..+++|+.|++++|.+.. .+|.++..+++|+.|+|++| .++.+|. ++.+|+|+.|+|++|. +..++..
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~----- 319 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERN----- 319 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-----
T ss_pred hhccCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcc-----
Confidence 56678999999999999877 55888999999999999999 5666665 5679999999999886 4444332
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
...+|+|+.|++++|. +... .+..+++|+.|+|++|+
T Consensus 320 -------~~~l~~L~~L~L~~N~-l~~~--------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 -------QPQFDRLENLYLDHNS-IVTL--------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp -------HHHHTTCSEEECCSSC-CCCC--------CCCTTCCCSEEECCSSC
T ss_pred -------cccCCCCCEEECCCCC-CCCc--------ChhhcCCCCEEEeeCCC
Confidence 2368999999999984 4433 24679999999999987
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.9e-21 Score=222.25 Aligned_cols=348 Identities=14% Similarity=0.125 Sum_probs=236.9
Q ss_pred EEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcc-cc-cccccCCCCcceEEeec
Q 002187 545 MLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVII-EI-PTNIEKLLHLKYLNLSC 622 (955)
Q Consensus 545 ~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~-~l-p~~i~~L~~Lr~L~L~~ 622 (955)
......+..+|. -.++|++|++.++..... .+..|.++++|++|+|++|.+. .+ |..++++++|++|+|++
T Consensus 16 ~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 16 ICINRGLHQVPE----LPAHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp ECCSSCCSSCCC----CCTTCCEEECCSSCCCEE---CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred CcCCCCcccCCC----CCCccCEEEecCCccCcC---ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 333444454554 237899999999875433 2445899999999999999975 45 56799999999999999
Q ss_pred CCCcccc-chhhcCCCCCCEEeeCCCCCccc-cCcc--ccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEecC
Q 002187 623 QMEIERL-PETLCELYNLERLNVDSCSNLRE-LPQG--IGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVGG 697 (955)
Q Consensus 623 ~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 697 (955)
|. +..+ |..++++++|++|++++|. +.. .|.. +..+++|++|++++|......|.. ++.+++|+.|++..+..
T Consensus 89 n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 89 NQ-FLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CT-TCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred Cc-cCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99 7665 7889999999999999998 553 4554 889999999999999544444555 78999999999877665
Q ss_pred ccCCccCccccccCCCCCCceEeCCCC--CC--CHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHH
Q 002187 698 GYDKACSLGSLKKLNLLRQCRIRGLGD--FS--DVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERL 773 (955)
Q Consensus 698 ~~~~~~~l~~L~~L~~L~~l~i~~~~~--~~--~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 773 (955)
....+..+..+.. ..|+.+.+.+..- +. .........+..+++|+.|++++|.+.+. ....
T Consensus 167 ~~~~~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--------------~~~~ 231 (455)
T 3v47_A 167 KSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES--------------MAKR 231 (455)
T ss_dssp SCCCTTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH--------------HHHH
T ss_pred cccChhhhhcccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc--------------chhh
Confidence 5432333333321 1233333332211 10 01111222344567899999988854321 1111
Q ss_pred hhhCCCCCCCCeEEEeeecCCCCCC--------CCChhc--ccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCC
Q 002187 774 LEALGPPPNLKELRIHEYRGRRNVV--------PKNWVM--SLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGS 842 (955)
Q Consensus 774 ~~~l~~~~~L~~L~l~~~~~~~~~~--------~p~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~ 842 (955)
+......++|+.|++++|......+ .+..+. .+++|+.|++++|......|. ++.+++|++|+|++|.
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 310 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE- 310 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-
Confidence 2222335789999998875433111 011122 247899999999954444444 8899999999998887
Q ss_pred ceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCC-CCCCCCCCC
Q 002187 843 VKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKAL-PDHLLQKTT 921 (955)
Q Consensus 843 l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~l~~ 921 (955)
+..+.... ...+++|+.|+++++ .+... .+..+..+++|+.|++++|. +..+ |..+..+++
T Consensus 311 l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 311 INKIDDNA-----------FWGLTHLLKLNLSQN-FLGSI-----DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372 (455)
T ss_dssp CCEECTTT-----------TTTCTTCCEEECCSS-CCCEE-----CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred ccccChhH-----------hcCcccCCEEECCCC-ccCCc-----ChhHhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence 55443322 236899999999998 34333 23357789999999999997 5554 778999999
Q ss_pred cCeEEEecCCCcccc
Q 002187 922 LQRLSIFSCPILKKT 936 (955)
Q Consensus 922 L~~L~l~~c~~l~~~ 936 (955)
|++|++++|. +...
T Consensus 373 L~~L~L~~N~-l~~~ 386 (455)
T 3v47_A 373 LKELALDTNQ-LKSV 386 (455)
T ss_dssp CCEEECCSSC-CSCC
T ss_pred ccEEECCCCc-cccC
Confidence 9999999984 3443
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=218.31 Aligned_cols=297 Identities=21% Similarity=0.214 Sum_probs=231.0
Q ss_pred CCcccEEEcCCCCcccc-cccccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcE
Q 002187 589 LTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMH 665 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~ 665 (955)
.+.|++|+|++|.+..+ |..+.++++|++|+|++|. ++.+ |..++++++|++|+|++|. +..+|.. +.++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCE
Confidence 35899999999999887 4689999999999999998 7766 7789999999999999998 8888865 689999999
Q ss_pred eeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcE
Q 002187 666 LENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIEL 745 (955)
Q Consensus 666 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 745 (955)
|++++|......|..+..+++|+.|++..+..... ....+..+.+|+.|.+.+..- . ......+..+++|+.|
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l-~---~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI---SHRAFSGLNSLEQLTLEKCNL-T---SIPTEALSHLHGLIVL 181 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE---CTTSSTTCTTCCEEEEESCCC-S---SCCHHHHTTCTTCCEE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCcccee---ChhhccCCCCCCEEECCCCcC-c---ccChhHhcccCCCcEE
Confidence 99999965555567789999999999877655432 122455666777777766421 1 1222346778999999
Q ss_pred EEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC
Q 002187 746 GLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP 825 (955)
Q Consensus 746 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 825 (955)
++..|.+.... ...+..+++|+.|++++|..... + |.......+|+.|+|++| .++.+|.
T Consensus 182 ~l~~n~i~~~~-----------------~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~~L~~L~l~~n-~l~~~~~ 241 (477)
T 2id5_A 182 RLRHLNINAIR-----------------DYSFKRLYRLKVLEISHWPYLDT-M-TPNCLYGLNLTSLSITHC-NLTAVPY 241 (477)
T ss_dssp EEESCCCCEEC-----------------TTCSCSCTTCCEEEEECCTTCCE-E-CTTTTTTCCCSEEEEESS-CCCSCCH
T ss_pred eCCCCcCcEeC-----------------hhhcccCcccceeeCCCCccccc-c-CcccccCccccEEECcCC-cccccCH
Confidence 99998654321 23567789999999999876552 3 444555669999999999 6777774
Q ss_pred --CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeee
Q 002187 826 --LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSI 903 (955)
Q Consensus 826 --l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i 903 (955)
++.+++|+.|+|+++. +..++...+ ..+++|+.|+++++ .+... .|..+..+++|+.|++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----------~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNP-ISTIEGSML-----------HELLRLQEIQLVGG-QLAVV-----EPYAFRGLNYLRVLNV 303 (477)
T ss_dssp HHHTTCTTCCEEECCSSC-CCEECTTSC-----------TTCTTCCEEECCSS-CCSEE-----CTTTBTTCTTCCEEEC
T ss_pred HHhcCccccCeeECCCCc-CCccChhhc-----------cccccCCEEECCCC-ccceE-----CHHHhcCcccCCEEEC
Confidence 8899999999999887 555554332 26899999999987 34433 2336788999999999
Q ss_pred ccCcCCCCCCCC-CCCCCCcCeEEEecCCCc
Q 002187 904 VYCPKLKALPDH-LLQKTTLQRLSIFSCPIL 933 (955)
Q Consensus 904 ~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l 933 (955)
++|. ++.+|.. +..+++|+.|++++|+-.
T Consensus 304 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 304 SGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence 9996 8888754 578899999999998753
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=4.3e-21 Score=232.71 Aligned_cols=268 Identities=17% Similarity=0.134 Sum_probs=170.5
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~ 622 (955)
+......+..+|..+. +++++|++.++....+ .+..|.++++|++|+|++|.+..+ |..++++++|++|+|++
T Consensus 9 ~~cs~~~L~~ip~~~~---~~l~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRL---PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCSSCCSCSC---TTCSEEECCSSCCCCC---CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCccccccccC---CCCcEEECCCCCCCCc---CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 4444455555665543 7899999999874332 234488999999999999998876 67799999999999999
Q ss_pred CCCccccch-hhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccC
Q 002187 623 QMEIERLPE-TLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYD 700 (955)
Q Consensus 623 ~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~ 700 (955)
|. ++.+|. .++++++|++|++++|. +..+| ..+.++++|++|++++|......|..++++++|+.|++..+.....
T Consensus 83 n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 83 NE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred Cc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 98 999987 59999999999999998 67766 5689999999999999965555566789999999998876654331
Q ss_pred CccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCC
Q 002187 701 KACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPP 780 (955)
Q Consensus 701 ~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 780 (955)
....+. ...++.|+.+.+.+.. +. ......+..+.+|+.|.+..+.+. ..........+ ..
T Consensus 161 ~~~~~~-~~~~~~L~~L~L~~n~-l~---~~~~~~~~~l~~L~~L~l~~~~l~-------------~~~~~~~~~~l-~~ 221 (680)
T 1ziw_A 161 KSEELD-IFANSSLKKLELSSNQ-IK---EFSPGCFHAIGRLFGLFLNNVQLG-------------PSLTEKLCLEL-AN 221 (680)
T ss_dssp CHHHHG-GGTTCEESEEECTTCC-CC---CBCTTGGGGSSEECEEECTTCCCH-------------HHHHHHHHHHH-TT
T ss_pred CHHHhh-ccccccccEEECCCCc-cc---ccChhhhhhhhhhhhhhccccccC-------------hhhHHHHHHHh-hh
Confidence 111111 1123445555544321 11 111123444556666655544211 00111111111 23
Q ss_pred CCCCeEEEeeecCCCCCCCCChhccccc--ccEEEEeCCCCCCcCC--CCCCCCCcceeeecCCC
Q 002187 781 PNLKELRIHEYRGRRNVVPKNWVMSLTN--LRVLHLRWCSNCEHLP--PLGKLPSLEDLEILGMG 841 (955)
Q Consensus 781 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~--L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~ 841 (955)
++|+.|++++|.... .+|.++..++. |+.|+|++|. ++.++ .++.+++|++|++.++.
T Consensus 222 ~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 222 TSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp SCCCEEECTTSCCCE--ECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccEEEccCCcccc--cChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc
Confidence 566666666665544 33555555543 6666666662 33222 25566666666665554
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=8.2e-21 Score=228.56 Aligned_cols=368 Identities=15% Similarity=0.071 Sum_probs=231.5
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~ 617 (955)
..+++|.++.+.+..++...+..+++|++|++++|....+ .+..|.++++|++|+|++|.+..+|. .|++|.+|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 6899999999999988876666999999999999875433 24458999999999999999999875 5899999999
Q ss_pred EEeecCCCccccch-hhcCCCCCCEEeeCCCCCccc--cCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCc-----
Q 002187 618 LNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRE--LPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRR----- 689 (955)
Q Consensus 618 L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~----- 689 (955)
|+|++|. ++.+|. .++++++|++|++++|. +.. +|..+..+++|++|++++|......|..+..+.+++.
T Consensus 129 L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 129 LVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred EECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 9999998 888885 58999999999999998 554 5778899999999999988432222222221111110
Q ss_pred ----------------------cceeE-------------------------ecCcc------CC---------------
Q 002187 690 ----------------------VSKLV-------------------------VGGGY------DK--------------- 701 (955)
Q Consensus 690 ----------------------L~~~~-------------------------~~~~~------~~--------------- 701 (955)
+.+.. ..... ..
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 00000 00000 00
Q ss_pred ------------cc-------------------CccccccCCCCCCceEeCCC--CCCC-----Hh--------hhHHhh
Q 002187 702 ------------AC-------------------SLGSLKKLNLLRQCRIRGLG--DFSD-----VG--------EARRAE 735 (955)
Q Consensus 702 ------------~~-------------------~l~~L~~L~~L~~l~i~~~~--~~~~-----~~--------~~~~~~ 735 (955)
.. .+..+.....|+.+.+.+.. .+.. .. ......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 00 00001111122222222110 0000 00 000011
Q ss_pred ccCCCCCCcEEEEeecCCCCCcc-----------cc--------------cCCCCc--------hhhHHHHhhhCCCCCC
Q 002187 736 LEKKKNLIELGLHFDHIRDGDEE-----------QA--------------GRRENE--------EDEDERLLEALGPPPN 782 (955)
Q Consensus 736 l~~~~~L~~L~L~~~~l~~~~~~-----------~~--------------~~~~~~--------~~~~~~~~~~l~~~~~ 782 (955)
...+++|+.|.++.|.+...... .. ...... ..........+..+++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 12345666666655443210000 00 000000 0000001123445677
Q ss_pred CCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCc-CCC-CCCCCCcceeeecCCCCceEeCccccCCccCCCCc
Q 002187 783 LKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEH-LPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGS 860 (955)
Q Consensus 783 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~ 860 (955)
++.+++++|.... ..+..+..+++|+.|+|++|..... .|. ++.+++|++|+|++|. ++.+....+
T Consensus 447 l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f--------- 514 (635)
T 4g8a_A 447 LIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF--------- 514 (635)
T ss_dssp CCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT---------
T ss_pred ccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHH---------
Confidence 8888888777665 4466777889999999998865543 333 7889999999998886 666654332
Q ss_pred cccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCC-CCCCCCC-CCcCeEEEecCCC
Q 002187 861 SVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKAL-PDHLLQK-TTLQRLSIFSCPI 932 (955)
Q Consensus 861 ~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p~~~~~l-~~L~~L~l~~c~~ 932 (955)
.++++|+.|+|+++ ++..+.. ..+..+++|+.|++++|. +..+ |..+..+ ++|+.|++++||-
T Consensus 515 --~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 515 --NSLSSLQVLNMSHN-NFFSLDT-----FPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp --TTCTTCCEEECTTS-CCCBCCC-----GGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred --cCCCCCCEEECCCC-cCCCCCh-----hHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 26899999999987 4554432 256789999999999997 5555 5567777 6899999988764
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.8e-20 Score=205.68 Aligned_cols=221 Identities=23% Similarity=0.282 Sum_probs=106.4
Q ss_pred CcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEee
Q 002187 590 TCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLE 667 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~ 667 (955)
+.|++|++++|.+..++ ..++++++|++|+|++|. ++.+ |..++++++|++|++++|. +..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEE
Confidence 34555555555554442 245555555555555554 4433 3445555555555555544 444444433 4555555
Q ss_pred CCCCCCCcccccC-CCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCC--CCCCHhhhHHhhccCCCCCCc
Q 002187 668 NDQTDSLRYLPVG-IGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLG--DFSDVGEARRAELEKKKNLIE 744 (955)
Q Consensus 668 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~--~~~~~~~~~~~~l~~~~~L~~ 744 (955)
+++| .+..+|.. +..+++|+.|++..+.... .+.....+..+ +|+.+.+.+.. .++. .+ .++|+.
T Consensus 130 l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-------~~--~~~L~~ 197 (332)
T 2ft3_A 130 IHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-KLNYLRISEAKLTGIPK-------DL--PETLNE 197 (332)
T ss_dssp CCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG-GGSCTTSSCSC-CCSCCBCCSSBCSSCCS-------SS--CSSCSC
T ss_pred CCCC-ccCccCHhHhCCCccCCEEECCCCcccc-CCCCcccccCC-ccCEEECcCCCCCccCc-------cc--cCCCCE
Confidence 5544 23333332 4445555555444332211 00000111111 22222221110 0000 00 146666
Q ss_pred EEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCC
Q 002187 745 LGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLP 824 (955)
Q Consensus 745 L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 824 (955)
|++++|.+.... ...+..+++|+.|++++|.+.. +++.++..+++|+.|+|++| .++.+|
T Consensus 198 L~l~~n~i~~~~-----------------~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 198 LHLDHNKIQAIE-----------------LEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp CBCCSSCCCCCC-----------------TTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSS-CCCBCC
T ss_pred EECCCCcCCccC-----------------HHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCC-cCeecC
Confidence 666666543321 1245556677777777776665 54556667777777777777 445565
Q ss_pred C-CCCCCCcceeeecCCCCceEeC
Q 002187 825 P-LGKLPSLEDLEILGMGSVKRVG 847 (955)
Q Consensus 825 ~-l~~l~~L~~L~L~~~~~l~~i~ 847 (955)
. ++.+++|+.|+++++. +..++
T Consensus 258 ~~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp TTGGGCTTCCEEECCSSC-CCBCC
T ss_pred hhhhcCccCCEEECCCCC-CCccC
Confidence 4 6667777777776654 44443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.5e-19 Score=198.26 Aligned_cols=290 Identities=18% Similarity=0.175 Sum_probs=150.8
Q ss_pred CceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCcccc-chhhcCCCCCCE
Q 002187 564 GLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERL-PETLCELYNLER 641 (955)
Q Consensus 564 ~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~ 641 (955)
+++.+.+.++....+ |. .-.+.|++|+|++|.+..++. .++++++|++|+|++|. ++.+ |..++++++|++
T Consensus 32 ~l~~l~~~~~~l~~l----p~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV----PK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCSC----CC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCcccc----Cc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCE
Confidence 566776665542211 11 123567777777777776654 57777777777777777 6555 666777777777
Q ss_pred EeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccc-cCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 642 LNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLP-VGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 642 LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
|++++|. +..+|..+. ++|++|++++|. +..++ ..+..+++|+.|++..+.... .+...
T Consensus 105 L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~--------------- 164 (330)
T 1xku_A 105 LYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-SGIEN--------------- 164 (330)
T ss_dssp EECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCT---------------
T ss_pred EECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-cCcCh---------------
Confidence 7777776 667776554 677777777763 33333 335666666666654433221 00011
Q ss_pred CCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCC
Q 002187 721 GLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPK 800 (955)
Q Consensus 721 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 800 (955)
..+..+++|+.|+++.|.+..... .+ +++|+.|++++|.+.. ++|
T Consensus 165 -------------~~~~~l~~L~~L~l~~n~l~~l~~------------------~~--~~~L~~L~l~~n~l~~--~~~ 209 (330)
T 1xku_A 165 -------------GAFQGMKKLSYIRIADTNITTIPQ------------------GL--PPSLTELHLDGNKITK--VDA 209 (330)
T ss_dssp -------------TGGGGCTTCCEEECCSSCCCSCCS------------------SC--CTTCSEEECTTSCCCE--ECT
T ss_pred -------------hhccCCCCcCEEECCCCccccCCc------------------cc--cccCCEEECCCCcCCc--cCH
Confidence 123344555555555553322110 11 1456666666555544 334
Q ss_pred ChhcccccccEEEEeCCCCCCcCC--CCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccccc
Q 002187 801 NWVMSLTNLRVLHLRWCSNCEHLP--PLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKE 878 (955)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 878 (955)
.++..+++|+.|+|++| .++.++ .++.+++|+.|+|++|. +..++.. ...+++|+.|+++++ .
T Consensus 210 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~N-~ 274 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQVVYLHNN-N 274 (330)
T ss_dssp GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCEEECCSS-C
T ss_pred HHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCEEECCCC-c
Confidence 55555666666666655 333322 25555666666665553 3222221 124555666666554 2
Q ss_pred cccccccccccc-ccccCcccceeeeccCcCCC--CCCCCCCCCCCcCeEEEecC
Q 002187 879 LEEWDFVTAVKG-EIRIMPRLSSLSIVYCPKLK--ALPDHLLQKTTLQRLSIFSC 930 (955)
Q Consensus 879 L~~~~~~~~~~~-~~~~~~~L~~L~i~~c~~l~--~lp~~~~~l~~L~~L~l~~c 930 (955)
++........+. .....++|+.|++.+||... ..|..+..+++|+.+++++|
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 333322111000 01124566666676666221 22345555666666666655
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.5e-19 Score=198.11 Aligned_cols=294 Identities=17% Similarity=0.153 Sum_probs=216.1
Q ss_pred ceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceE
Q 002187 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYL 618 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L 618 (955)
..+.+.+....+..+|..+ .++++.|++.++....+ .+..|.++++|++|+|++|.+..+ |..++++++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEI---KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCB---CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEe---ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 4456666666666666554 37899999999875433 233488999999999999999887 7889999999999
Q ss_pred EeecCCCccccchhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCc--ccccCCCCCCCCCccceeEe
Q 002187 619 NLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLR--YLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 619 ~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--~~p~~i~~l~~L~~L~~~~~ 695 (955)
+|++|. ++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|.... ..+..+..+++|+.|++..+
T Consensus 106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 999999 999998765 799999999998 777665 47899999999999985321 44566788888888876543
Q ss_pred cCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh
Q 002187 696 GGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLE 775 (955)
Q Consensus 696 ~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 775 (955)
.... + +. .+ .++|+.|++++|.+.... ..
T Consensus 182 ~l~~--------l-----------------~~-------~~--~~~L~~L~l~~n~l~~~~-----------------~~ 210 (330)
T 1xku_A 182 NITT--------I-----------------PQ-------GL--PPSLTELHLDGNKITKVD-----------------AA 210 (330)
T ss_dssp CCCS--------C-----------------CS-------SC--CTTCSEEECTTSCCCEEC-----------------TG
T ss_pred cccc--------C-----------------Cc-------cc--cccCCEEECCCCcCCccC-----------------HH
Confidence 2211 0 00 00 157888888887544321 23
Q ss_pred hCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 776 ALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 776 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
.+..+++|+.|++++|.+.. +++.++..+++|+.|+|++| .++.+|. +..+++|++|++.+|. ++.++...+...
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~ 286 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP 286 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS
T ss_pred HhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc
Confidence 56778999999999998877 65678889999999999999 5667765 8899999999998876 666665544321
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
. ....++.|+.|++.+++ +..|.. .|..+..+++|+.+++++|.
T Consensus 287 ~-----~~~~~~~l~~l~l~~N~-~~~~~i---~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 G-----YNTKKASYSGVSLFSNP-VQYWEI---QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp S-----CCTTSCCCSEEECCSSS-SCGGGS---CGGGGTTCCCGGGEEC----
T ss_pred c-----cccccccccceEeecCc-cccccc---CccccccccceeEEEecccC
Confidence 1 01246889999999986 333322 33467788999999998873
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.3e-20 Score=199.64 Aligned_cols=126 Identities=20% Similarity=0.299 Sum_probs=68.6
Q ss_pred CCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCC-CCcc-cccccccCCCCcceEEeecCCCcc-ccchhhcCCCCC
Q 002187 563 KGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDG-SVII-EIPTNIEKLLHLKYLNLSCQMEIE-RLPETLCELYNL 639 (955)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~-~~~~-~lp~~i~~L~~Lr~L~L~~~~~i~-~LP~~i~~L~~L 639 (955)
.+++.|++.++...... .++..|.++++|++|+|++ |.+. .+|..++++++|++|+|++|. +. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCC
Confidence 45666666665432100 0122356666666666663 4443 456666666666666666666 44 566666666666
Q ss_pred CEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCC-CCCcc
Q 002187 640 ERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELI-SLRRV 690 (955)
Q Consensus 640 q~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~-~L~~L 690 (955)
++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 6666666652225566666666666666666632224444444443 34433
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.6e-20 Score=202.12 Aligned_cols=247 Identities=19% Similarity=0.200 Sum_probs=191.3
Q ss_pred CceEEEEEEccCCCC---cchhhhccCCCceEEEecC-CCchhhHHHHHHHhcCCCcccEEEcCCCCcc-cccccccCCC
Q 002187 539 KKVFHLMLTLHRGAS---VPISIWDNVKGLRSLLVKS-DEYSWSIEVLRQLFDKLTCLRTLKLDGSVII-EIPTNIEKLL 613 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~---~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~L~ 613 (955)
.+++++.+..+.+.. +|..+. .+++|++|++.+ +..... ++..|.++++|++|+|++|.+. .+|..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP---IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESC---CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCccccc---CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 479999999998873 666666 899999999984 543221 3445889999999999999997 6899999999
Q ss_pred CcceEEeecCCCcc-ccchhhcCCCCCCEEeeCCCCCccccCccccCCC-CCcEeeCCCCCCCcccccCCCCCCCCCccc
Q 002187 614 HLKYLNLSCQMEIE-RLPETLCELYNLERLNVDSCSNLRELPQGIGKLR-KLMHLENDQTDSLRYLPVGIGELISLRRVS 691 (955)
Q Consensus 614 ~Lr~L~L~~~~~i~-~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 691 (955)
+|++|+|++|. +. .+|..++++++|++|++++|.....+|..+..++ +|++|++++|......|..++.++ |+.|+
T Consensus 126 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 99999999998 66 7999999999999999999983338999999998 999999999965556777777776 77766
Q ss_pred eeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHH
Q 002187 692 KLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDE 771 (955)
Q Consensus 692 ~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 771 (955)
+..+.... .....+..+++|+.|++++|.+...
T Consensus 204 Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 236 (313)
T 1ogq_A 204 LSRNMLEG-------------------------------DASVLFGSDKNTQKIHLAKNSLAFD---------------- 236 (313)
T ss_dssp CCSSEEEE-------------------------------CCGGGCCTTSCCSEEECCSSEECCB----------------
T ss_pred CcCCcccC-------------------------------cCCHHHhcCCCCCEEECCCCceeee----------------
Confidence 54332211 0012345567888888888755321
Q ss_pred HHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCC
Q 002187 772 RLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGS 842 (955)
Q Consensus 772 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 842 (955)
++.+..+++|++|++++|.+... + |.++..+++|+.|+|++|.....+|..+.+++|+.|++.+++.
T Consensus 237 --~~~~~~l~~L~~L~Ls~N~l~~~-~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 237 --LGKVGLSKNLNGLDLRNNRIYGT-L-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp --GGGCCCCTTCCEEECCSSCCEEC-C-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred --cCcccccCCCCEEECcCCcccCc-C-ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 22356678899999998887741 4 8888889999999999986555788888888888888877763
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1e-19 Score=198.52 Aligned_cols=219 Identities=23% Similarity=0.332 Sum_probs=133.2
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCE
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLER 641 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~ 641 (955)
.+++++|++.++.... ++..+.++++|++|+|++|.+..+|..++++++|++|+|++|. ++.+|..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~~----lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ----FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSS----CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchh----cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCE
Confidence 3566666666655321 2222556788888888888888888888888888888888887 7788888888888888
Q ss_pred EeeCCCCCccccCccccC---------CCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCC
Q 002187 642 LNVDSCSNLRELPQGIGK---------LRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLN 712 (955)
Q Consensus 642 LdL~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~ 712 (955)
|++++|..+..+|..+.. +++|++|++++| .++.+|..++.+++|+.|++..+....
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~------------- 220 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA------------- 220 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC-------------
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc-------------
Confidence 888887777778876654 777777777666 344566666666666655554332111
Q ss_pred CCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeec
Q 002187 713 LLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYR 792 (955)
Q Consensus 713 ~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 792 (955)
++ ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.
T Consensus 221 ------------l~-------~~l~~l~~L~~L~Ls~n~~~~~-----------------~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 221 ------------LG-------PAIHHLPKLEELDLRGCTALRN-----------------YPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp ------------CC-------GGGGGCTTCCEEECTTCTTCCB-----------------CCCCTTCCCCCCEEECTTCT
T ss_pred ------------Cc-------hhhccCCCCCEEECcCCcchhh-----------------hHHHhcCCCCCCEEECCCCC
Confidence 00 0122334455555554432211 12234445556666665554
Q ss_pred CCCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeee
Q 002187 793 GRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEI 837 (955)
Q Consensus 793 ~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L 837 (955)
... ..|.++..+++|+.|+|++|...+.+|. ++++++|+.+.+
T Consensus 265 ~~~--~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 265 NLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCC--BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred chh--hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 443 2255555566666666666555555554 555555555554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.1e-18 Score=191.39 Aligned_cols=292 Identities=15% Similarity=0.129 Sum_probs=182.9
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEee
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLE 667 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~ 667 (955)
..|++++++++.+..+|..+. ++|++|+|++|. ++.+| ..+.++++|++|++++|. +..+ |..+..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence 368999999999999998775 699999999999 88875 579999999999999998 6665 77899999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEE
Q 002187 668 NDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGL 747 (955)
Q Consensus 668 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L 747 (955)
+++| .+..+|..+. ++|++|++..+..... ....+..+++|+.+.+.+..-. . .......+..+ +|+.|++
T Consensus 109 L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 109 ISKN-HLVEIPPNLP--SSLVELRIHDNRIRKV---PKGVFSGLRNMNCIEMGGNPLE-N-SGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCSS-CCCSCCSSCC--TTCCEEECCSSCCCCC---CSGGGSSCSSCCEEECCSCCCB-G-GGSCTTSSCSC-CCSCCBC
T ss_pred CCCC-cCCccCcccc--ccCCEEECCCCccCcc---CHhHhCCCccCCEEECCCCccc-c-CCCCcccccCC-ccCEEEC
Confidence 9998 5678888776 7888888776554431 1112444555555554432110 0 00111223334 6777777
Q ss_pred EeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--
Q 002187 748 HFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-- 825 (955)
Q Consensus 748 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-- 825 (955)
+.|.+.... ..+ +++|+.|++++|.+.. +++.++..+++|+.|+|++| .++.++.
T Consensus 180 ~~n~l~~l~------------------~~~--~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~ 236 (332)
T 2ft3_A 180 SEAKLTGIP------------------KDL--PETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHN-QIRMIENGS 236 (332)
T ss_dssp CSSBCSSCC------------------SSS--CSSCSCCBCCSSCCCC--CCTTSSTTCTTCSCCBCCSS-CCCCCCTTG
T ss_pred cCCCCCccC------------------ccc--cCCCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCC-cCCcCChhH
Confidence 666543321 111 2567777777776665 44566667777777777777 4444433
Q ss_pred CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccc-cccCcccceeeec
Q 002187 826 LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGE-IRIMPRLSSLSIV 904 (955)
Q Consensus 826 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~-~~~~~~L~~L~i~ 904 (955)
++.+++|+.|+|++|. +..++.. ...+++|+.|+++++ .++........+.. ...+++|+.|++.
T Consensus 237 ~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 302 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF 302 (332)
T ss_dssp GGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred hhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence 6667777777776664 4333322 125677777777765 34443322111100 1124667777777
Q ss_pred cCcCC--CCCCCCCCCCCCcCeEEEecCC
Q 002187 905 YCPKL--KALPDHLLQKTTLQRLSIFSCP 931 (955)
Q Consensus 905 ~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 931 (955)
+|+.. ...|..+..+++|+.|++++|.
T Consensus 303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccCcccccccchhhhhhccccc
Confidence 77633 2334456667777777776663
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=197.82 Aligned_cols=258 Identities=18% Similarity=0.200 Sum_probs=145.4
Q ss_pred CcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEe
Q 002187 590 TCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHL 666 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L 666 (955)
++|++|++++|.+..+|. .++++++|++|+|++|. ++.++ ..++++++|++|++++|. +..+|.. +..+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEE
Confidence 467777777777777654 57777777777777776 66553 457777777777777776 6666665 6677777777
Q ss_pred eCCCCCCCccccc--CCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCc
Q 002187 667 ENDQTDSLRYLPV--GIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIE 744 (955)
Q Consensus 667 ~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 744 (955)
++++| .+..+|. .+..+++|+.|++..+.... .+ ....+..+++|+.
T Consensus 130 ~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------~~-----------------------~~~~~~~l~~L~~ 178 (353)
T 2z80_A 130 NLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT-------KI-----------------------QRKDFAGLTFLEE 178 (353)
T ss_dssp ECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC-------EE-----------------------CTTTTTTCCEEEE
T ss_pred ECCCC-CCcccCchhhhccCCCCcEEECCCCcccc-------cc-----------------------CHHHccCCCCCCE
Confidence 77776 4445554 45556666666554432110 00 0011233445555
Q ss_pred EEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCC
Q 002187 745 LGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLP 824 (955)
Q Consensus 745 L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 824 (955)
|++++|.+... .+..+..+++|++|++++|.... +++.++..+++|+.|++++| .++.++
T Consensus 179 L~l~~n~l~~~-----------------~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n-~l~~~~ 238 (353)
T 2z80_A 179 LEIDASDLQSY-----------------EPKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDT-DLDTFH 238 (353)
T ss_dssp EEEEETTCCEE-----------------CTTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESC-BCTTCC
T ss_pred EECCCCCcCcc-----------------CHHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCC-cccccc
Confidence 66655533221 01234445555555555555433 32222334555555555555 222211
Q ss_pred CCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeec
Q 002187 825 PLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIV 904 (955)
Q Consensus 825 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~ 904 (955)
. ..... ....+.|+.+.+.++ .+..... ...|..+..+++|+.|+++
T Consensus 239 ~-----------------------~~l~~--------~~~~~~l~~l~L~~~-~l~~~~l-~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 239 F-----------------------SELST--------GETNSLIKKFTFRNV-KITDESL-FQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp C-----------------------C--------------CCCCCCEEEEESC-BCCHHHH-HHHHHHHHTCTTCCEEECC
T ss_pred c-----------------------ccccc--------ccccchhhccccccc-cccCcch-hhhHHHHhcccCCCEEECC
Confidence 1 00000 012344555555554 2222211 1233356778999999999
Q ss_pred cCcCCCCCCCCC-CCCCCcCeEEEecCCCcc
Q 002187 905 YCPKLKALPDHL-LQKTTLQRLSIFSCPILK 934 (955)
Q Consensus 905 ~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l~ 934 (955)
+|. ++.+|..+ ..+++|++|++++|+-..
T Consensus 286 ~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 286 RNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-CCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 985 78888875 788999999999886543
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=7.1e-19 Score=200.60 Aligned_cols=160 Identities=20% Similarity=0.121 Sum_probs=68.3
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCC-----------------------------
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKL----------------------------- 589 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l----------------------------- 589 (955)
..++.+.+..+.+..+|..+. .+++|+.|++.++.. ...+|..+.++
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~-~L~~L~~L~l~~n~~---~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEW---ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH---HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccchhhhcccCchhhCChhHh-cccchhhhhccCCcc---cccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 466777777777766777766 778888777766532 11112222222
Q ss_pred ----CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcE
Q 002187 590 ----TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMH 665 (955)
Q Consensus 590 ----~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~ 665 (955)
++|++|++++|.+..+|.. +.+|++|++++|. ++.+|.. .++|++|++++|. +..+| .+..+++|++
T Consensus 87 p~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCE
T ss_pred CCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCE
Confidence 3455555555554444432 2445555555544 4444321 1466666666665 55566 4666677777
Q ss_pred eeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 666 LENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 666 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
|++++| .++.+|..+ .+|+.|++..+.... +..+..+++|+.+.+.
T Consensus 158 L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~-----l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 158 IDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEE-----LPELQNLPFLTAIYAD 203 (454)
T ss_dssp EECCSS-CCSCCCCCC---TTCCEEECCSSCCSS-----CCCCTTCTTCCEEECC
T ss_pred EECCCC-cCcccCCCc---ccccEEECcCCcCCc-----CccccCCCCCCEEECC
Confidence 777666 344455433 355555555443332 1234444445544443
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=3.2e-18 Score=195.17 Aligned_cols=301 Identities=22% Similarity=0.245 Sum_probs=174.5
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCC-CcccEEEcCCCCcccccccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKL-TCLRTLKLDGSVIIEIPTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l-~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~ 617 (955)
.+++.+.+..+.+..+|. ..++|++|++.++.... +..+ ++|++|++++|.+..+| .++++++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--------l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--------CCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--------ccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 577788888877765542 34788888888876432 2222 57888888888888887 5888888888
Q ss_pred EEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 618 LNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 618 L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
|++++|. ++.+|..+ .+|++|++++|. +..+| .+..+++|++|++++| .+..+|... ++|+.|++..+..
T Consensus 158 L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~l~~n~l 227 (454)
T 1jl5_A 158 IDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGNNIL 227 (454)
T ss_dssp EECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCCEEECCSSCC
T ss_pred EECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---CcccEEECcCCcC
Confidence 8888887 77787643 488888888887 77777 5888888888888887 455555433 4677777665543
Q ss_pred ccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC
Q 002187 698 GYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEAL 777 (955)
Q Consensus 698 ~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 777 (955)
.. +..+..+++|+.+.+.+.. +.... ....+|+.|++++|.+.+...
T Consensus 228 ~~-----lp~~~~l~~L~~L~l~~N~-l~~l~-------~~~~~L~~L~l~~N~l~~l~~-------------------- 274 (454)
T 1jl5_A 228 EE-----LPELQNLPFLTTIYADNNL-LKTLP-------DLPPSLEALNVRDNYLTDLPE-------------------- 274 (454)
T ss_dssp SS-----CCCCTTCTTCCEEECCSSC-CSSCC-------SCCTTCCEEECCSSCCSCCCC--------------------
T ss_pred Cc-----ccccCCCCCCCEEECCCCc-CCccc-------ccccccCEEECCCCcccccCc--------------------
Confidence 32 2234455556655554421 11100 123577778877775433110
Q ss_pred CCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCC
Q 002187 778 GPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDT 857 (955)
Q Consensus 778 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 857 (955)
.+++|+.|++++|.... + |.. .++|+.|++++| .++.++.+ .++|+.|+++++. +..++.
T Consensus 275 -~~~~L~~L~ls~N~l~~--l-~~~---~~~L~~L~l~~N-~l~~i~~~--~~~L~~L~Ls~N~-l~~lp~--------- 334 (454)
T 1jl5_A 275 -LPQSLTFLDVSENIFSG--L-SEL---PPNLYYLNASSN-EIRSLCDL--PPSLEELNVSNNK-LIELPA--------- 334 (454)
T ss_dssp -CCTTCCEEECCSSCCSE--E-SCC---CTTCCEEECCSS-CCSEECCC--CTTCCEEECCSSC-CSCCCC---------
T ss_pred -ccCcCCEEECcCCccCc--c-cCc---CCcCCEEECcCC-cCCcccCC--cCcCCEEECCCCc-cccccc---------
Confidence 13567777777766554 3 221 256666666666 33333321 1366666666544 221111
Q ss_pred CCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCC--CCCCCCCCC-------------CCc
Q 002187 858 DGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLK--ALPDHLLQK-------------TTL 922 (955)
Q Consensus 858 ~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~--~lp~~~~~l-------------~~L 922 (955)
.+++|+.|+++++ .++.+ |. .+++|+.|++++|+... .+|..+..+ ++|
T Consensus 335 ------~~~~L~~L~L~~N-~l~~l------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 335 ------LPPRLERLIASFN-HLAEV------PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp ------CCTTCCEEECCSS-CCSCC------CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------
T ss_pred ------cCCcCCEEECCCC-ccccc------cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC
Confidence 3466777776665 33322 21 35667777777665322 355555544 566
Q ss_pred CeEEEecCC
Q 002187 923 QRLSIFSCP 931 (955)
Q Consensus 923 ~~L~l~~c~ 931 (955)
+.|++++|+
T Consensus 399 ~~L~ls~N~ 407 (454)
T 1jl5_A 399 KQLHVETNP 407 (454)
T ss_dssp ---------
T ss_pred CEEECCCCc
Confidence 777776654
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1e-18 Score=210.18 Aligned_cols=141 Identities=21% Similarity=0.152 Sum_probs=115.4
Q ss_pred CCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccc
Q 002187 550 RGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIER 628 (955)
Q Consensus 550 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~ 628 (955)
....+|..+. +++++|+++++....+ .+..|.++++|++|+|++|.+..+|+ .|++|++|++|+|++|. ++.
T Consensus 42 ~l~~vP~~lp---~~~~~LdLs~N~i~~l---~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~ 114 (635)
T 4g8a_A 42 NFYKIPDNLP---FSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 114 (635)
T ss_dssp CCSSCCSSSC---TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCE
T ss_pred CcCccCCCCC---cCCCEEEeeCCCCCCC---CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCC
Confidence 3445665443 5799999999875433 23458999999999999999999865 69999999999999999 999
Q ss_pred cch-hhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCCCCc-ccccCCCCCCCCCccceeEecCc
Q 002187 629 LPE-TLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTDSLR-YLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 629 LP~-~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~-~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
+|. .+.+|++|++|++++|. +..+|.. +.+|++|++|++++|.... ..|..++.+++|++|++..+...
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 985 58999999999999998 8888764 8999999999999995322 45778899999999988765543
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=6.5e-18 Score=198.44 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=80.7
Q ss_pred CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCC
Q 002187 779 PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTD 858 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 858 (955)
.+++|+.|++++|.+.. + |. .+++|+.|++++| .++.+|. .+++|+.|+|++|. ++.++
T Consensus 179 ~~~~L~~L~Ls~N~l~~--l-~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp----------- 237 (622)
T 3g06_A 179 LPSGLQELSVSDNQLAS--L-PT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP----------- 237 (622)
T ss_dssp CCTTCCEEECCSSCCSC--C-CC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC-----------
T ss_pred cCCCCcEEECCCCCCCC--C-CC---ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC-----------
Confidence 35778888888877766 5 43 3477888888877 5556664 25778888887664 33322
Q ss_pred CccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCC
Q 002187 859 GSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 859 ~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 932 (955)
..+++|+.|+++++ .++.++. .+++|+.|++++|. ++.+|..+..+++|+.|++++|+-
T Consensus 238 ----~~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 ----VLPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ----CCCCcCcEEECCCC-CCCcCCc---------ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCC
Confidence 15677888888876 4443321 56788888888885 777887777888888888888764
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.4e-19 Score=195.12 Aligned_cols=278 Identities=14% Similarity=0.158 Sum_probs=181.5
Q ss_pred hHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCcc
Q 002187 578 SIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQG 656 (955)
Q Consensus 578 ~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~ 656 (955)
....+...+..+++|++|+|++|.+..++ ..++++++|++|+|++|. +..++. +..+++|++|++++|. +..+|
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-- 96 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL-- 96 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE--
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc--
Confidence 45555666788889999999999988875 678999999999999998 777665 8899999999999987 77665
Q ss_pred ccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhc
Q 002187 657 IGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAEL 736 (955)
Q Consensus 657 i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l 736 (955)
.+++|++|++++| .+..++.. .+++|+.|++..+.... .....+
T Consensus 97 --~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~-------------------------------~~~~~~ 140 (317)
T 3o53_A 97 --VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITM-------------------------------LRDLDE 140 (317)
T ss_dssp --ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCS-------------------------------GGGBCT
T ss_pred --CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCC-------------------------------ccchhh
Confidence 3489999999988 34444432 24556555543332211 001123
Q ss_pred cCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC-CCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEe
Q 002187 737 EKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEAL-GPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLR 815 (955)
Q Consensus 737 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~ 815 (955)
..+++|+.|++++|.+.... +..+ ..+++|+.|++++|.+.. + +.. ..+++|+.|+|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~~~l~~L~~L~L~~N~l~~--~-~~~-~~l~~L~~L~Ls 199 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVN-----------------FAELAASSDTLEHLNLQYNFIYD--V-KGQ-VVFAKLKTLDLS 199 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEE-----------------GGGGGGGTTTCCEEECTTSCCCE--E-ECC-CCCTTCCEEECC
T ss_pred hccCCCCEEECCCCCCCccc-----------------HHHHhhccCcCCEEECCCCcCcc--c-ccc-cccccCCEEECC
Confidence 34567788888777543321 1122 245788888888888766 4 332 247888888888
Q ss_pred CCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccccccccccccccccccccc
Q 002187 816 WCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRI 894 (955)
Q Consensus 816 ~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 894 (955)
+| .++.+|. +..+++|+.|+|++|. +..++..+ ..+++|+.|++++++ +.. ...+..+..
T Consensus 200 ~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~N~-~~~----~~~~~~~~~ 260 (317)
T 3o53_A 200 SN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNG-FHC----GTLRDFFSK 260 (317)
T ss_dssp SS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCC-CBH----HHHHHHHHT
T ss_pred CC-cCCcchhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccCCC-ccC----cCHHHHHhc
Confidence 88 4555543 7778888888887775 55554332 256788888888774 221 122335567
Q ss_pred CcccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCCcccc
Q 002187 895 MPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPILKKT 936 (955)
Q Consensus 895 ~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~ 936 (955)
+++|+.|++.+|..++..+..-...+.+....-..|..+...
T Consensus 261 ~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~ 302 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302 (317)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTT
T ss_pred cccceEEECCCchhccCCchhccCCCceecccceeeccCChh
Confidence 888888888877766654433222333333333345555443
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=6e-20 Score=211.65 Aligned_cols=365 Identities=16% Similarity=0.095 Sum_probs=231.8
Q ss_pred CceEEEEEEccCCCCcch-hhhccCCCceEEEecCCCchhh-HHHHHHHhcCCCcccEEEcCCCCcccc-cccc-cCCC-
Q 002187 539 KKVFHLMLTLHRGASVPI-SIWDNVKGLRSLLVKSDEYSWS-IEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNI-EKLL- 613 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~-~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i-~~L~- 613 (955)
.+++++.+..+.+...+. ..+..+++|++|.+.++..... ...++..+..+++|++|+|++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 478889998887754332 2244789999999999875432 123566688999999999999987652 2222 3344
Q ss_pred ---CcceEEeecCCCcc-----ccchhhcCCCCCCEEeeCCCCCcccc-Cccc-----cCCCCCcEeeCCCCCCCc----
Q 002187 614 ---HLKYLNLSCQMEIE-----RLPETLCELYNLERLNVDSCSNLREL-PQGI-----GKLRKLMHLENDQTDSLR---- 675 (955)
Q Consensus 614 ---~Lr~L~L~~~~~i~-----~LP~~i~~L~~Lq~LdL~~~~~l~~l-p~~i-----~~L~~L~~L~l~~~~~l~---- 675 (955)
+|++|+|++|. ++ .+|..+.++++|++|++++|. +... +..+ ..+++|++|++++|....
T Consensus 83 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 69999999998 76 578889999999999999988 5431 2222 236689999999984322
Q ss_pred ccccCCCCCCCCCccceeEecCccCCccCcc-ccc-cCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCC
Q 002187 676 YLPVGIGELISLRRVSKLVVGGGYDKACSLG-SLK-KLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIR 753 (955)
Q Consensus 676 ~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~-~L~-~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~ 753 (955)
.++..+..+++|++|++..+.........+. .+. .+.+|+.|.+.+..-...........+..+++|+.|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 2355567788999998876654321111111 111 24467777776653322222234455667889999999988432
Q ss_pred CCCcccccCCCCchhhHHHHhhh-CCCCCCCCeEEEeeecCCCCC---CCCChhcccccccEEEEeCCCCCCcC-----C
Q 002187 754 DGDEEQAGRRENEEDEDERLLEA-LGPPPNLKELRIHEYRGRRNV---VPKNWVMSLTNLRVLHLRWCSNCEHL-----P 824 (955)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~---~~p~~~~~l~~L~~L~L~~~~~~~~l-----~ 824 (955)
+ .....+.+. ..++++|++|++++|.+.... + +..+..+++|+.|+|++|. ++.. .
T Consensus 241 ~-------------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~ 305 (461)
T 1z7x_W 241 D-------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNE-LGDEGARLLC 305 (461)
T ss_dssp H-------------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCC-CHHHHHHHHH
T ss_pred h-------------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCC-CchHHHHHHH
Confidence 1 011222233 335789999999988654310 1 4455578999999999883 3211 1
Q ss_pred C--CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccc-cCccccee
Q 002187 825 P--LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIR-IMPRLSSL 901 (955)
Q Consensus 825 ~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~-~~~~L~~L 901 (955)
. ....++|++|++++|. +...+..... ..+..+++|+.|+++++ .+.+..... ....+. .+++|++|
T Consensus 306 ~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-------~~l~~~~~L~~L~Ls~n-~i~~~~~~~-l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCS-FTAACCSHFS-------SVLAQNRFLLELQISNN-RLEDAGVRE-LCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHTSTTCCCCEEECTTSC-CBGGGHHHHH-------HHHHHCSSCCEEECCSS-BCHHHHHHH-HHHHHTSTTCCCCEE
T ss_pred HHhccCCccceeeEcCCCC-CchHHHHHHH-------HHHhhCCCccEEEccCC-ccccccHHH-HHHHHcCCCCceEEE
Confidence 1 1234689999998876 3221110000 01225688999999887 344322110 000111 26789999
Q ss_pred eeccCcCCC-----CCCCCCCCCCCcCeEEEecCC
Q 002187 902 SIVYCPKLK-----ALPDHLLQKTTLQRLSIFSCP 931 (955)
Q Consensus 902 ~i~~c~~l~-----~lp~~~~~l~~L~~L~l~~c~ 931 (955)
++++|. ++ .+|..+..+++|++|++++|+
T Consensus 376 ~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 376 WLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp ECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 999986 55 577777778889999998885
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4.9e-17 Score=185.59 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=57.0
Q ss_pred ccEEEcCCCCcccccccccCCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCC
Q 002187 592 LRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLEND 669 (955)
Q Consensus 592 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~ 669 (955)
.+.++.++..+..+|..+. .++++|+|++|. ++.++ ..+.++++|++|+|++|. +..++ ..+.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECC
Confidence 4456666666666666554 566677777666 65554 456667777777777666 54444 446666777777776
Q ss_pred CCCCCccccc-CCCCCCCCCccce
Q 002187 670 QTDSLRYLPV-GIGELISLRRVSK 692 (955)
Q Consensus 670 ~~~~l~~~p~-~i~~l~~L~~L~~ 692 (955)
+| .++.+|. .+..+++|+.|++
T Consensus 121 ~n-~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 121 DN-RLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp SS-CCSSCCTTTSCSCSSCCEEEC
T ss_pred CC-cCCeeCHhHhhccccCceeeC
Confidence 66 3444443 2444555554443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=189.92 Aligned_cols=267 Identities=15% Similarity=0.113 Sum_probs=185.6
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~ 622 (955)
.....+.+..+|..+. ++|++|++.++....+ .+..|.++++|++|++++|.+..++ ..++++++|++|+|++
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eeCCCCCccccccccc---ccCcEEECCCCcCccc---CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3445556666776554 5899999998875432 2334788999999999999988874 5699999999999999
Q ss_pred CCCccccchh-hcCCCCCCEEeeCCCCCccccCc--cccCCCCCcEeeCCCCCCCccc-ccCCCCCCCCCccceeEecCc
Q 002187 623 QMEIERLPET-LCELYNLERLNVDSCSNLRELPQ--GIGKLRKLMHLENDQTDSLRYL-PVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 623 ~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~ 698 (955)
|. ++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|+.|++..+...
T Consensus 110 n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 110 NY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred Cc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 98 8888876 8899999999999997 888887 6888999999999988656655 456888999999988876654
Q ss_pred cCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCC
Q 002187 699 YDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALG 778 (955)
Q Consensus 699 ~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 778 (955)
.. ....+..+++|+.+.+.+.. +.... ...+..+++|+.|++++|.+.+.... .+....
T Consensus 188 ~~---~~~~l~~l~~L~~L~l~~n~-l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~~ 246 (353)
T 2z80_A 188 SY---EPKSLKSIQNVSHLILHMKQ-HILLL---EIFVDVTSSVECLELRDTDLDTFHFS--------------ELSTGE 246 (353)
T ss_dssp EE---CTTTTTTCSEEEEEEEECSC-STTHH---HHHHHHTTTEEEEEEESCBCTTCCCC--------------------
T ss_pred cc---CHHHHhccccCCeecCCCCc-cccch---hhhhhhcccccEEECCCCcccccccc--------------cccccc
Confidence 32 12334455556666665532 12221 22234467888888888866543211 011223
Q ss_pred CCCCCCeEEEeeecCCCC---CCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCC
Q 002187 779 PPPNLKELRIHEYRGRRN---VVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMG 841 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~---~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 841 (955)
..+.++.+++.++..... .+ |.++..+++|+.|+|++| .++.+|. ++.+++|++|+|.+++
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhccccccccccCcchhhh-HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 456677777776654321 03 556777888888888888 5556666 5778888888887765
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=5.6e-17 Score=185.85 Aligned_cols=242 Identities=23% Similarity=0.294 Sum_probs=127.4
Q ss_pred ccEEEcCCCCcccccccccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCC
Q 002187 592 LRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLEND 669 (955)
Q Consensus 592 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~ 669 (955)
.+.++.++..+..+|..+. .+|++|+|++|. ++.+ |..+.++++|++|+|++|. +..++ ..+.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECC
Confidence 3456666666666665544 466677776666 5554 3456666777777776665 44443 456666667777766
Q ss_pred CCCCCcccccC-CCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEE
Q 002187 670 QTDSLRYLPVG-IGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLH 748 (955)
Q Consensus 670 ~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 748 (955)
+| .+..+|.. ++.+++|+.|++..+.... +
T Consensus 132 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~---------------------------------------- 162 (452)
T 3zyi_A 132 DN-WLTVIPSGAFEYLSKLRELWLRNNPIES--------I---------------------------------------- 162 (452)
T ss_dssp SS-CCSBCCTTTSSSCTTCCEEECCSCCCCE--------E----------------------------------------
T ss_pred CC-cCCccChhhhcccCCCCEEECCCCCcce--------e----------------------------------------
Confidence 66 33344332 4444444444433221110 0
Q ss_pred eecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCC
Q 002187 749 FDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGK 828 (955)
Q Consensus 749 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 828 (955)
. ...+..+++|+.|++++|..... +++..+..+++|+.|+|++| .++.+|.+..
T Consensus 163 -------~-----------------~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 216 (452)
T 3zyi_A 163 -------P-----------------SYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMC-NIKDMPNLTP 216 (452)
T ss_dssp -------C-----------------TTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTS-CCSSCCCCTT
T ss_pred -------C-----------------HhHHhcCCcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCC-cccccccccc
Confidence 0 00122233444444444222221 22334555666666666666 4555566666
Q ss_pred CCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcC
Q 002187 829 LPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPK 908 (955)
Q Consensus 829 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~ 908 (955)
+++|+.|+|+++. +..+....+ ..+++|+.|+++++ .+... .+..+..+++|+.|++++|.
T Consensus 217 l~~L~~L~Ls~N~-l~~~~~~~~-----------~~l~~L~~L~L~~n-~l~~~-----~~~~~~~l~~L~~L~L~~N~- 277 (452)
T 3zyi_A 217 LVGLEELEMSGNH-FPEIRPGSF-----------HGLSSLKKLWVMNS-QVSLI-----ERNAFDGLASLVELNLAHNN- 277 (452)
T ss_dssp CTTCCEEECTTSC-CSEECGGGG-----------TTCTTCCEEECTTS-CCCEE-----CTTTTTTCTTCCEEECCSSC-
T ss_pred cccccEEECcCCc-CcccCcccc-----------cCccCCCEEEeCCC-cCceE-----CHHHhcCCCCCCEEECCCCc-
Confidence 6666666666554 333322211 24566666666665 23222 12245566777777777764
Q ss_pred CCCCCCC-CCCCCCcCeEEEecCC
Q 002187 909 LKALPDH-LLQKTTLQRLSIFSCP 931 (955)
Q Consensus 909 l~~lp~~-~~~l~~L~~L~l~~c~ 931 (955)
++.+|.. +..+++|+.|++++||
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCccChHHhccccCCCEEEccCCC
Confidence 5555543 4556677777776664
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=3.3e-17 Score=192.41 Aligned_cols=255 Identities=16% Similarity=0.117 Sum_probs=171.4
Q ss_pred ceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEE
Q 002187 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLN 619 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~ 619 (955)
.++.+.+..+.+..+|..+. ++|++|.+.++....+ + ..+++|++|+|++|.+..+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~l----p---~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSL----P---ALPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCC----C---CCCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCC----C---CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 46777888887777776554 7888999888864322 1 256789999999998888877 678899999
Q ss_pred eecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCcc
Q 002187 620 LSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGY 699 (955)
Q Consensus 620 L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 699 (955)
|++|. ++.+|. .+.+|++|++++|. +..+|.. +++|++|++++| .+..+|.. +++|+.|.+..+....
T Consensus 108 Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred CcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCCCCCC
Confidence 99888 888887 57888999998887 7788864 488889999888 55566643 3445555443322111
Q ss_pred CCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCC
Q 002187 700 DKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGP 779 (955)
Q Consensus 700 ~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (955)
++ ..+++|+.|+++.|.+.... ..
T Consensus 176 -------------------------l~----------~~~~~L~~L~Ls~N~l~~l~---------------------~~ 199 (622)
T 3g06_A 176 -------------------------LP----------MLPSGLQELSVSDNQLASLP---------------------TL 199 (622)
T ss_dssp -------------------------CC----------CCCTTCCEEECCSSCCSCCC---------------------CC
T ss_pred -------------------------Cc----------ccCCCCcEEECCCCCCCCCC---------------------Cc
Confidence 00 12356777777776543211 12
Q ss_pred CCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCC
Q 002187 780 PPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDG 859 (955)
Q Consensus 780 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 859 (955)
+++|+.|.+++|.+.. + |. .+++|+.|+|++| .++.+| ..+++|+.|+|++|. +..++.
T Consensus 200 ~~~L~~L~L~~N~l~~--l-~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp~----------- 258 (622)
T 3g06_A 200 PSELYKLWAYNNRLTS--L-PA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLPM----------- 258 (622)
T ss_dssp CTTCCEEECCSSCCSS--C-CC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-----------
T ss_pred cchhhEEECcCCcccc--c-CC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCCc-----------
Confidence 3677778887777665 5 43 3477788888777 555666 456778888877664 333221
Q ss_pred ccccCCCccceeeecccccccccccccccccccccCcccceeeeccCc
Q 002187 860 SSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCP 907 (955)
Q Consensus 860 ~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~ 907 (955)
.+++|+.|++++| .++.+ |..+..+++|+.|++++|+
T Consensus 259 ----~~~~L~~L~Ls~N-~L~~l------p~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 ----LPSGLLSLSVYRN-QLTRL------PESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ----CCTTCCEEECCSS-CCCSC------CGGGGGSCTTCEEECCSCC
T ss_pred ----ccccCcEEeCCCC-CCCcC------CHHHhhccccCEEEecCCC
Confidence 3567888877776 44433 3356677888888888876
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-17 Score=180.79 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcC-C-CCCCCCCcceeeecCCC
Q 002187 777 LGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHL-P-PLGKLPSLEDLEILGMG 841 (955)
Q Consensus 777 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~ 841 (955)
+..+++|+.|++++|......+ |.++..+++|+.|+|++| .++.+ | .++.+++|+.|+|+++.
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cccCcCCCEEECCCCccccccc-hhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc
Confidence 4445666666666665432112 555566666666666666 33333 2 25556666666665544
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=3.9e-18 Score=184.72 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=61.0
Q ss_pred CCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc---cccccCCCCcceEEeecCCCccccchhhcCCCCC
Q 002187 563 KGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI---PTNIEKLLHLKYLNLSCQMEIERLPETLCELYNL 639 (955)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~L 639 (955)
++|++|.+.++....+ .+..|.++++|++|+|++|.+..+ |..+..+++|++|+|++|. +..+|..+.++++|
T Consensus 28 ~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 4555555555542211 122245555555555555555433 3444455555555555555 55555555555555
Q ss_pred CEEeeCCCCCccccCc--cccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccc
Q 002187 640 ERLNVDSCSNLRELPQ--GIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVS 691 (955)
Q Consensus 640 q~LdL~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 691 (955)
++|++++|. +..+|. .+..+++|++|++++|......|..++.+++|+.|+
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 555555554 444442 345555555555555532222233344444444443
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=4.4e-19 Score=211.46 Aligned_cols=304 Identities=14% Similarity=0.022 Sum_probs=152.7
Q ss_pred hcCCCcccEEEcCCCCcc-----cccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCc---cccCccc
Q 002187 586 FDKLTCLRTLKLDGSVII-----EIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNL---RELPQGI 657 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l---~~lp~~i 657 (955)
+..++.|++|++++|.+. .++..+.++++|++|++++|. +..+|..+.++++|++|+++.+... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 344455555555555443 123334445555555555544 4445555555555555555432211 1222334
Q ss_pred cCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCc-cccccCCCCCCceEeCCCCCCCHhhhHHhhc
Q 002187 658 GKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSL-GSLKKLNLLRQCRIRGLGDFSDVGEARRAEL 736 (955)
Q Consensus 658 ~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l-~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l 736 (955)
..+++|+.|.+.++ ....+|..+..+++|+.|++..+.... ..+ .-+..+++|+.|.+.+ .+ .........
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~~--~~--~~~~l~~~~ 338 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLET---EDHCTLIQKCPNLEVLETRN--VI--GDRGLEVLA 338 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCH---HHHHHHHTTCTTCCEEEEEG--GG--HHHHHHHHH
T ss_pred hccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCH---HHHHHHHHhCcCCCEEeccC--cc--CHHHHHHHH
Confidence 44555555555443 233445555556666666655443211 111 1234555555555541 11 112222333
Q ss_pred cCCCCCCcEEEEe----------e-cCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhc-
Q 002187 737 EKKKNLIELGLHF----------D-HIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVM- 804 (955)
Q Consensus 737 ~~~~~L~~L~L~~----------~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~- 804 (955)
..+++|+.|++.. + .+ ....+......+++|++|++..+.... ..+..+.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~L~~L~l~~~~l~~--~~~~~l~~ 400 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLV----------------SQRGLIALAQGCQELEYMAVYVSDITN--ESLESIGT 400 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCC----------------CHHHHHHHHHHCTTCSEEEEEESCCCH--HHHHHHHH
T ss_pred HhCCCCCEEEeecCccccccccccCcc----------------CHHHHHHHHhhCccCeEEEeecCCccH--HHHHHHHh
Confidence 4566777777772 1 11 111122223346778888885554432 1123333
Q ss_pred ccccccEEEEeC---CCCCCcCCC-------CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeec
Q 002187 805 SLTNLRVLHLRW---CSNCEHLPP-------LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFW 874 (955)
Q Consensus 805 ~l~~L~~L~L~~---~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 874 (955)
.+++|+.|++++ |..++..|. +..+++|+.|+|..|.+. +........ ...+|+|+.|+++
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~--l~~~~~~~~-------~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG--LTDLGLSYI-------GQYSPNVRWMLLG 471 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG--CCHHHHHHH-------HHSCTTCCEEEEC
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC--ccHHHHHHH-------HHhCccceEeecc
Confidence 377888888874 334444321 345778888888665430 111100000 1147788888888
Q ss_pred ccccccccccccccccccccCcccceeeeccCcCCCC--CCCCCCCCCCcCeEEEecCC
Q 002187 875 SMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKA--LPDHLLQKTTLQRLSIFSCP 931 (955)
Q Consensus 875 ~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~--lp~~~~~l~~L~~L~l~~c~ 931 (955)
+|. +.+.. .+.....+++|++|+|++|+ +.. ++.....+++|+.|++++|.
T Consensus 472 ~n~-l~~~~----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVG-ESDEG----LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCC-SSHHH----HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCC-CCHHH----HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 763 33211 12234567888888888887 442 34444567888888888887
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.5e-17 Score=188.72 Aligned_cols=238 Identities=21% Similarity=0.235 Sum_probs=163.6
Q ss_pred EEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEee
Q 002187 543 HLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLS 621 (955)
Q Consensus 543 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~ 621 (955)
.+......+..+|..+. +++++|++.++....+ .+..|.++++|++|+|++|.+..++ ..+.++.+|++|+|+
T Consensus 58 ~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP---SNTRYLNLMENNIQMI---QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEECCCCcCccCCCCC---CCccEEECcCCcCceE---CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34444445555565433 6788888888764332 2334778888888888888887764 668888888888888
Q ss_pred cCCCccccchh-hcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEecCc
Q 002187 622 CQMEIERLPET-LCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVGGG 698 (955)
Q Consensus 622 ~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~ 698 (955)
+|. ++.+|.. +.++++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|.. +..+++|+.|++..+...
T Consensus 132 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 132 DNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp SSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 887 7777754 7778888888888887 666665 4677888888888887667666653 666777777665433211
Q ss_pred cCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCC
Q 002187 699 YDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALG 778 (955)
Q Consensus 699 ~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 778 (955)
. ++ .+..+.+|+.|+|++|.+.... ...+.
T Consensus 210 ~--------~~-------------------------~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~ 239 (452)
T 3zyi_A 210 D--------MP-------------------------NLTPLVGLEELEMSGNHFPEIR-----------------PGSFH 239 (452)
T ss_dssp S--------CC-------------------------CCTTCTTCCEEECTTSCCSEEC-----------------GGGGT
T ss_pred c--------cc-------------------------cccccccccEEECcCCcCcccC-----------------ccccc
Confidence 1 00 1334567888888877543321 23566
Q ss_pred CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCC
Q 002187 779 PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMG 841 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 841 (955)
.+++|+.|++++|.+.. +++.++..+++|+.|+|++| .++.+|. +..+++|+.|+|.+++
T Consensus 240 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 67788888888887766 55677778888888888888 5555554 6778888888887765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=7.6e-19 Score=191.09 Aligned_cols=275 Identities=15% Similarity=0.119 Sum_probs=197.1
Q ss_pred cchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhh
Q 002187 554 VPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETL 633 (955)
Q Consensus 554 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i 633 (955)
.+...+..+++|++|++.++..... .+..|..+++|++|+|++|.+..+++ ++.+++|++|+|++|. ++.+|.
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~-- 97 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-- 97 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCC---CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE--
T ss_pred hHHHHhccCCCCCEEECcCCccCcC---CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC--
Confidence 3445555678999999999875443 34568999999999999999987765 9999999999999998 887774
Q ss_pred cCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCC
Q 002187 634 CELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNL 713 (955)
Q Consensus 634 ~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~ 713 (955)
+++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|+.|++..+.... ..
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~---- 160 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VN---- 160 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--------EE----
T ss_pred --CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--------cc----
Confidence 4899999999998 7777643 47899999999995433334567888888888765443221 00
Q ss_pred CCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecC
Q 002187 714 LRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRG 793 (955)
Q Consensus 714 L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 793 (955)
.......+++|+.|++++|.+... +....+++|+.|++++|.+
T Consensus 161 ------------------~~~~~~~l~~L~~L~L~~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 161 ------------------FAELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ------------------GGGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSCC
T ss_pred ------------------HHHHhhccCcCCEEECCCCcCccc-------------------ccccccccCCEEECCCCcC
Confidence 001112457888888888854321 2333578999999999998
Q ss_pred CCCCCCCChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceee
Q 002187 794 RRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELR 872 (955)
Q Consensus 794 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 872 (955)
.. + |..+..+++|+.|+|++| .++.+|. +..+++|+.|++++++-.......+ ...+|+|+.|.
T Consensus 204 ~~--l-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-----------~~~~~~L~~l~ 268 (317)
T 3o53_A 204 AF--M-GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----------FSKNQRVQTVA 268 (317)
T ss_dssp CE--E-CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH-----------HHTCHHHHHHH
T ss_pred Cc--c-hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHH-----------HhccccceEEE
Confidence 87 7 556889999999999999 6666665 8889999999999887220111111 23688999999
Q ss_pred ecccccccccccccccccccccCcccceeeeccCcCCC
Q 002187 873 FWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLK 910 (955)
Q Consensus 873 l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~ 910 (955)
+.++..++.... ..+..+.+....-..|..+.
T Consensus 269 l~~~~~l~~~~~------~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 269 KQTVKKLTGQNE------EECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp HHHHHHHHSSSS------CCCSSTTCEEETTEEEBCCT
T ss_pred CCCchhccCCch------hccCCCceecccceeeccCC
Confidence 988777665443 22334444444445565443
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=186.90 Aligned_cols=238 Identities=19% Similarity=0.222 Sum_probs=169.4
Q ss_pred EEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEee
Q 002187 543 HLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLS 621 (955)
Q Consensus 543 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~ 621 (955)
.+......+..+|..+. ++++.|++.++....+ .+..|.++++|++|+|++|.+..++ ..+.++++|++|+|+
T Consensus 47 ~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS---TNTRLLNLHENQIQII---KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp EEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEE---CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred EEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCee---CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 44555555565665543 6788888888764333 2234788888888888888887765 568888888888888
Q ss_pred cCCCccccch-hhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEecCc
Q 002187 622 CQMEIERLPE-TLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 622 ~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~ 698 (955)
+|. ++.+|. .+.++++|++|+|++|. +..+|. .+..+++|++|++++|..+..++. .+..+++|+.|++..+...
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 887 877775 57888888888888887 666665 577888888888888766666665 3667777777765433211
Q ss_pred cCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCC
Q 002187 699 YDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALG 778 (955)
Q Consensus 699 ~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 778 (955)
. + + .+..+++|+.|+|++|.+.... ...+.
T Consensus 199 ~--------~-----------------~--------~~~~l~~L~~L~Ls~N~l~~~~-----------------~~~~~ 228 (440)
T 3zyj_A 199 E--------I-----------------P--------NLTPLIKLDELDLSGNHLSAIR-----------------PGSFQ 228 (440)
T ss_dssp S--------C-----------------C--------CCTTCSSCCEEECTTSCCCEEC-----------------TTTTT
T ss_pred c--------c-----------------c--------ccCCCcccCEEECCCCccCccC-----------------hhhhc
Confidence 1 1 0 1334567888888887554321 23566
Q ss_pred CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCC
Q 002187 779 PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMG 841 (955)
Q Consensus 779 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 841 (955)
.+++|+.|++++|.+.. +++.++..+++|+.|+|++| .++.+|. +..+++|+.|+|.+++
T Consensus 229 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 77888888888888776 55777778888888888888 5556554 6778888888887766
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.8e-17 Score=177.42 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=63.6
Q ss_pred CCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcE
Q 002187 589 LTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMH 665 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~ 665 (955)
.+.|++|++++|.+..+| ..++++++|++|+|++|. ++.+ |..+.++++|++|++++|..+..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 356777777777776665 346677777777777776 5555 556677777777777776545555 455666777777
Q ss_pred eeCCCCCCCcccccCCCCCCCCCccce
Q 002187 666 LENDQTDSLRYLPVGIGELISLRRVSK 692 (955)
Q Consensus 666 L~l~~~~~l~~~p~~i~~l~~L~~L~~ 692 (955)
|++++|......|..+..+++|+.|++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEEC
Confidence 777766332222334555555555544
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=4.7e-18 Score=195.82 Aligned_cols=237 Identities=13% Similarity=0.132 Sum_probs=138.9
Q ss_pred cCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcE
Q 002187 587 DKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMH 665 (955)
Q Consensus 587 ~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~ 665 (955)
..+++|++|+|++|.+..++ ..++++++|++|+|++|. ++.++. ++.+++|++|+|++|. +..+|. .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 44558999999999988774 679999999999999998 776665 8899999999999987 776664 388999
Q ss_pred eeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcE
Q 002187 666 LENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIEL 745 (955)
Q Consensus 666 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 745 (955)
|++++|. +..+|.. .+++|+.|++..+.... .....+..+++|+.|
T Consensus 104 L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~-------------------------------~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 104 LHAANNN-ISRVSCS--RGQGKKNIYLANNKITM-------------------------------LRDLDEGCRSRVQYL 149 (487)
T ss_dssp EECCSSC-CCCEEEC--CCSSCEEEECCSSCCCS-------------------------------GGGBCGGGGSSEEEE
T ss_pred EECcCCc-CCCCCcc--ccCCCCEEECCCCCCCC-------------------------------CCchhhcCCCCCCEE
Confidence 9998883 3433332 23445544443222111 001122334566666
Q ss_pred EEEeecCCCCCcccccCCCCchhhHHHHhhhCC-CCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCC
Q 002187 746 GLHFDHIRDGDEEQAGRRENEEDEDERLLEALG-PPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLP 824 (955)
Q Consensus 746 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 824 (955)
+|++|.+.+.. +..+. .+++|+.|++++|.+.. + |.. ..+++|+.|+|++| .++.+|
T Consensus 150 ~Ls~N~l~~~~-----------------~~~l~~~l~~L~~L~Ls~N~l~~--~-~~~-~~l~~L~~L~Ls~N-~l~~~~ 207 (487)
T 3oja_A 150 DLKLNEIDTVN-----------------FAELAASSDTLEHLNLQYNFIYD--V-KGQ-VVFAKLKTLDLSSN-KLAFMG 207 (487)
T ss_dssp ECTTSCCCEEE-----------------GGGGGGGTTTCCEEECTTSCCCE--E-ECC-CCCTTCCEEECCSS-CCCEEC
T ss_pred ECCCCCCCCcC-----------------hHHHhhhCCcccEEecCCCcccc--c-ccc-ccCCCCCEEECCCC-CCCCCC
Confidence 66666443211 11222 34566666666666554 3 222 24666666666666 333333
Q ss_pred -CCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeee
Q 002187 825 -PLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSI 903 (955)
Q Consensus 825 -~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i 903 (955)
.++.+++|+.|+|++|. +..++..+ ..+|+|+.|++++++-.. +..|..+..+++|+.|.+
T Consensus 208 ~~~~~l~~L~~L~Ls~N~-l~~lp~~l------------~~l~~L~~L~l~~N~l~c-----~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCCBCH-----HHHHHHHTTCHHHHHHHH
T ss_pred HhHcCCCCccEEEecCCc-Ccccchhh------------ccCCCCCEEEcCCCCCcC-----cchHHHHHhCCCCcEEec
Confidence 35566666666666554 43333221 145666666666653110 112223445666666665
Q ss_pred c
Q 002187 904 V 904 (955)
Q Consensus 904 ~ 904 (955)
.
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 5
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=3.7e-19 Score=205.01 Aligned_cols=341 Identities=16% Similarity=0.118 Sum_probs=220.9
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcc-----cccccccCCCCcceEEeecCCCccc-cchhh-c
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVII-----EIPTNIEKLLHLKYLNLSCQMEIER-LPETL-C 634 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~L~~Lr~L~L~~~~~i~~-LP~~i-~ 634 (955)
.++|++|++.++...... ....+..+++|++|+|++|.+. .++..+..+++|++|+|++|. +.. .+..+ .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH
T ss_pred CccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHH
Confidence 357899999988753322 3455788999999999999987 467788899999999999998 654 23233 3
Q ss_pred CCC----CCCEEeeCCCCCcc-----ccCccccCCCCCcEeeCCCCCCCcccccC-----CCCCCCCCccceeEecCccC
Q 002187 635 ELY----NLERLNVDSCSNLR-----ELPQGIGKLRKLMHLENDQTDSLRYLPVG-----IGELISLRRVSKLVVGGGYD 700 (955)
Q Consensus 635 ~L~----~Lq~LdL~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-----i~~l~~L~~L~~~~~~~~~~ 700 (955)
.+. +|++|++++|. +. .+|..+..+++|++|++++|......+.. ....++|++|++..+.....
T Consensus 79 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 455 79999999998 65 46888999999999999998532211221 22356799988876654431
Q ss_pred CccC-ccccccCCCCCCceEeCCCCCCCH-hhhHHhhc-cCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC
Q 002187 701 KACS-LGSLKKLNLLRQCRIRGLGDFSDV-GEARRAEL-EKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEAL 777 (955)
Q Consensus 701 ~~~~-l~~L~~L~~L~~l~i~~~~~~~~~-~~~~~~~l-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 777 (955)
.... ...+..+++|+.|.+.+.. +... .......+ ...++|+.|++++|.+... ....+...+
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------------~~~~l~~~l 223 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-------------NCRDLCGIV 223 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-------------HHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-------------HHHHHHHHH
Confidence 1111 2234556777777776543 1111 11111112 1356899999998865332 222345566
Q ss_pred CCCCCCCeEEEeeecCCCCC---CCCChhcccccccEEEEeCCCCCCc-----CCC-CCCCCCcceeeecCCCCceEeCc
Q 002187 778 GPPPNLKELRIHEYRGRRNV---VPKNWVMSLTNLRVLHLRWCSNCEH-----LPP-LGKLPSLEDLEILGMGSVKRVGN 848 (955)
Q Consensus 778 ~~~~~L~~L~l~~~~~~~~~---~~p~~~~~l~~L~~L~L~~~~~~~~-----l~~-l~~l~~L~~L~L~~~~~l~~i~~ 848 (955)
..+++|++|++++|.+.... +.+.++..+++|++|++++| .++. ++. +..+++|++|+|+++. +...+.
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~ 301 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGA 301 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHH
Confidence 67899999999998754310 00222235889999999999 5554 333 5668999999998875 322211
Q ss_pred cccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCC-C----CCCC-CCCCc
Q 002187 849 EFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKAL-P----DHLL-QKTTL 922 (955)
Q Consensus 849 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l-p----~~~~-~l~~L 922 (955)
......- ....++|+.|++++|. +..... ...+..+..+++|+.|++++|. +... + ..+. ..++|
T Consensus 302 ~~l~~~l------~~~~~~L~~L~L~~n~-l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 302 RLLCETL------LEPGCQLESLWVKSCS-FTAACC-SHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp HHHHHHH------TSTTCCCCEEECTTSC-CBGGGH-HHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHh------ccCCccceeeEcCCCC-CchHHH-HHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCce
Confidence 1111000 0134799999999984 443221 1123345678999999999995 5432 1 2222 26799
Q ss_pred CeEEEecCC
Q 002187 923 QRLSIFSCP 931 (955)
Q Consensus 923 ~~L~l~~c~ 931 (955)
++|++++|.
T Consensus 373 ~~L~L~~n~ 381 (461)
T 1z7x_W 373 RVLWLADCD 381 (461)
T ss_dssp CEEECTTSC
T ss_pred EEEECCCCC
Confidence 999999984
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=4.9e-17 Score=174.02 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=109.3
Q ss_pred EEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEe
Q 002187 542 FHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNL 620 (955)
Q Consensus 542 r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L 620 (955)
+.+......+..+|..+ .++|++|.+.++....+ .+..|..+++|++|+|++|.+..+ |..++++++|++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHV---PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCcc---CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 34455555555566543 47899999998875433 233478999999999999999887 678999999999999
Q ss_pred ecCCCcccc-chhhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCcccee
Q 002187 621 SCQMEIERL-PETLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKL 693 (955)
Q Consensus 621 ~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~ 693 (955)
++|..++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. ++.+++|+.|++.
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECC
Confidence 999657776 6789999999999999998 6655 566889999999999998 34444433 5666666666543
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=6.8e-18 Score=201.23 Aligned_cols=359 Identities=16% Similarity=0.092 Sum_probs=198.8
Q ss_pred CceEEEEEEccCCCCc-chhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc-----ccccccCC
Q 002187 539 KKVFHLMLTLHRGASV-PISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE-----IPTNIEKL 612 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L 612 (955)
..++++.+..+.+... +..+...+++|++|.+.+|...... .++..+.++++|++|+|++|.+.. ++.....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD-GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH-HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH-HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4678888887765432 2233335899999999988432222 245556789999999999998654 33344577
Q ss_pred CCcceEEeecCC-Cc--cccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCC------CcccccCCCC
Q 002187 613 LHLKYLNLSCQM-EI--ERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDS------LRYLPVGIGE 683 (955)
Q Consensus 613 ~~Lr~L~L~~~~-~i--~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------l~~~p~~i~~ 683 (955)
++|++|++++|. .+ ..++.-+.++++|++|++++|..+..+|..+..+++|++|.++.+.. +..++..+.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 899999999885 12 22344456689999999999966777888888889999998765521 1112223333
Q ss_pred C------------------------CCCCccceeEecCccCCccCccc-cccCCCCCCceEeCCCCCCCHhhhHHhhccC
Q 002187 684 L------------------------ISLRRVSKLVVGGGYDKACSLGS-LKKLNLLRQCRIRGLGDFSDVGEARRAELEK 738 (955)
Q Consensus 684 l------------------------~~L~~L~~~~~~~~~~~~~~l~~-L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 738 (955)
+ ++|+.|++..+... ...+.. +..+++|+.|.+.++ + ...........
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~---~~~l~~~~~~~~~L~~L~l~~~--~--~~~~l~~l~~~ 336 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ---SYDLVKLLCQCPKLQRLWVLDY--I--EDAGLEVLAST 336 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC---HHHHHHHHTTCTTCCEEEEEGG--G--HHHHHHHHHHH
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC---HHHHHHHHhcCCCcCEEeCcCc--c--CHHHHHHHHHh
Confidence 4 44444444333211 111111 234444555554432 1 11111222223
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChh-cccccccEEEEe--
Q 002187 739 KKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWV-MSLTNLRVLHLR-- 815 (955)
Q Consensus 739 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~-- 815 (955)
+++|+.|++..+...+. .................+++|+.|.+.++..... . +..+ ..+++|+.|+|+
T Consensus 337 ~~~L~~L~L~~~~~~g~-------~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~-~-~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVM-------EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA-A-LITIARNRPNMTRFRLCII 407 (594)
T ss_dssp CTTCCEEEEECSCTTCS-------SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH-H-HHHHHHHCTTCCEEEEEES
T ss_pred CCCCCEEEEecCccccc-------ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH-H-HHHHHhhCCCcceeEeecc
Confidence 55666666643210000 0000001111111112357788886655443321 1 2222 257888888888
Q ss_pred ---CCCCCCcCCC-------CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccc
Q 002187 816 ---WCSNCEHLPP-------LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFV 885 (955)
Q Consensus 816 ---~~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~ 885 (955)
+|..++..|. +..+++|+.|+|++ .+...+.... ...+++|+.|++++|. +.+...
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l----------~~~~~~L~~L~L~~~~-i~~~~~- 473 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI----------GTYAKKMEMLSVAFAG-DSDLGM- 473 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH----------HHHCTTCCEEEEESCC-SSHHHH-
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH----------HHhchhccEeeccCCC-CcHHHH-
Confidence 4445554432 45577888888854 2221110000 0137888888888874 322111
Q ss_pred cccccccccCcccceeeeccCcCCCC--CCCCCCCCCCcCeEEEecCCC
Q 002187 886 TAVKGEIRIMPRLSSLSIVYCPKLKA--LPDHLLQKTTLQRLSIFSCPI 932 (955)
Q Consensus 886 ~~~~~~~~~~~~L~~L~i~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 932 (955)
+.....+++|+.|+|++|+. .. ++.....+++|+.|++++|+.
T Consensus 474 ---~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 ---HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ---HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ---HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 11124588999999999984 32 222345578999999999976
No 72
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=1e-15 Score=173.26 Aligned_cols=304 Identities=13% Similarity=0.025 Sum_probs=183.3
Q ss_pred CCccccchhHHHHHHHHH-hcCCCCCCCCCEEEEE--EcCCCChHHHHHHHHhcchhhhc---cCC-ceEEEEeCCcccH
Q 002187 176 ESEIVGREKEKKELVNRL-LCESSKEQKGPCIISL--VGMGGIGKTTLAQFAYNNVDVKK---KFE-KRMWICVSELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~---~F~-~~~wv~vs~~~~~ 248 (955)
+..++||+++++.+.++| .............+.| +|++|+||||||+.+++...... .|. ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 468999999999999988 4321100013446666 99999999999999998432210 122 3578887777888
Q ss_pred HHHHHHHHHHHcCCCCC-CCChHHHHHHHHHHhc--CceEEEEEeCCCCccc------cChhhHHhhccCC---C--CCc
Q 002187 249 FRIARAIIEALTGSASN-FGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDY------CKWEPFYHCLKDG---L--HES 314 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~gs 314 (955)
..++..++.+++..... ..+...+...+.+.+. +++++|||||+|.-.. +.+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999999754322 2334556666777665 7899999999976321 2233333333221 2 344
Q ss_pred EEEEecCChhHHHhhc--------C-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcC------CC
Q 002187 315 KILITTRKETVACIMG--------S-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCK------GL 379 (955)
Q Consensus 315 ~iivTtr~~~v~~~~~--------~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~------gl 379 (955)
.||+||+...+...+. . ...+.+++++.++++++|...+...... ..--.+....|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 5888887655332111 1 2239999999999999997654211110 0111356778888888 99
Q ss_pred hHHHHHHHHHh---c---CC--CCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCC--CCcccc
Q 002187 380 PLAAKTIACLL---R---SK--NTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFP--KDYRIW 449 (955)
Q Consensus 380 Plai~~~~~~l---~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~ 449 (955)
|..+..+.... + .. -+.+.+..+...... ...+.-++..||.+.+.++..++.+. .+..++
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 97665554321 1 11 123334333322100 22344567889999999998888653 233566
Q ss_pred hHHHHHHHHHcC--CcccCCCCcHHHHHHHHHHHHhhccCccccc
Q 002187 450 KYKLIELWMAQG--YLSEKGPKEMEDIGEEYFNTLASRSFFQDLE 492 (955)
Q Consensus 450 ~~~Li~~W~a~g--~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 492 (955)
...+...+.... ... .. .........|+++|.+.++|....
T Consensus 330 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYN-VK-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHHSC-CC-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHhhcC-CC-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 666655553210 110 01 112345678999999999997754
No 73
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.64 E-value=1.4e-16 Score=141.51 Aligned_cols=81 Identities=27% Similarity=0.411 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHHHhhcchhhh
Q 002187 4 AIISPLLEQLTSMTVEEAKEQVRLVTGVGKEAKKLTSNLRAIQAVLHDAEKR--QVKEETVRLWLDQLRHACYDMEDVLG 81 (955)
Q Consensus 4 ~~v~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~ld 81 (955)
|+|+++++||++ ++.+|+.++.||++++++|+++|++|++||.||+.+ +..+++++.|+++||++|||+||+||
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999 899999999999999999999999999999999987 56799999999999999999999999
Q ss_pred hhHHHHH
Q 002187 82 EWNTARL 88 (955)
Q Consensus 82 ~~~~~~~ 88 (955)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999873
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=3.1e-16 Score=170.01 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=105.3
Q ss_pred CCCcccEEEcCCCCcc-cccccc--cCCCCcceEEeecCCCccccchhhcCC-----CCCCEEeeCCCCCccccC-cccc
Q 002187 588 KLTCLRTLKLDGSVII-EIPTNI--EKLLHLKYLNLSCQMEIERLPETLCEL-----YNLERLNVDSCSNLRELP-QGIG 658 (955)
Q Consensus 588 ~l~~Lr~L~L~~~~~~-~lp~~i--~~L~~Lr~L~L~~~~~i~~LP~~i~~L-----~~Lq~LdL~~~~~l~~lp-~~i~ 658 (955)
.+++|++|+|++|.+. .+|..+ +.+++|++|+|++|. ++.+|..++.+ ++|++|++++|. +..+| ..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 4556666666666654 345544 566666666666665 55555555554 566666666655 44433 4555
Q ss_pred CCCCCcEeeCCCCCCCcc--cccCC--CCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHh
Q 002187 659 KLRKLMHLENDQTDSLRY--LPVGI--GELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRA 734 (955)
Q Consensus 659 ~L~~L~~L~l~~~~~l~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~ 734 (955)
.+++|++|++++|..... +|..+ +.+++|+.|++..+. +.........
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~----------------------------l~~~~~~~~~ 222 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG----------------------------METPSGVCSA 222 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC----------------------------CCCHHHHHHH
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc----------------------------CcchHHHHHH
Confidence 666666666665532211 12222 344444444332211 1111111112
Q ss_pred hccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEE
Q 002187 735 ELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHL 814 (955)
Q Consensus 735 ~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L 814 (955)
.+..+++|+.|++++|.+.+..+ ...+..+++|+.|++++|.+.. + |.++. ++|+.|+|
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~l~~L~~L~Ls~N~l~~--i-p~~~~--~~L~~L~L 281 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAG----------------APSCDWPSQLNSLNLSFTGLKQ--V-PKGLP--AKLSVLDL 281 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCC----------------CSCCCCCTTCCEEECTTSCCSS--C-CSSCC--SEEEEEEC
T ss_pred HHhcCCCCCEEECCCCcCCcccc----------------hhhhhhcCCCCEEECCCCccCh--h-hhhcc--CCceEEEC
Confidence 23345667777776665443210 0123335667777777776664 5 44443 66777777
Q ss_pred eCCCCCCcCCCCCCCCCcceeeecCCC
Q 002187 815 RWCSNCEHLPPLGKLPSLEDLEILGMG 841 (955)
Q Consensus 815 ~~~~~~~~l~~l~~l~~L~~L~L~~~~ 841 (955)
++| .++.+|.+..+++|++|+|.+++
T Consensus 282 s~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 282 SYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred CCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 766 45555666666777777666554
No 75
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.63 E-value=1.7e-14 Score=159.33 Aligned_cols=293 Identities=13% Similarity=0.116 Sum_probs=178.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcc------cH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELF------DE 248 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 248 (955)
.+..|+||+++++.+.+++... +++.|+|++|+|||||++++++. . . .+|+.+.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 4567999999999999988531 48999999999999999999873 2 1 6788765443 45
Q ss_pred HHHHHHHHHHHcC----------------CCC--CCCChHHHHHHHHHHhcC-ceEEEEEeCCCCccc-------cChhh
Q 002187 249 FRIARAIIEALTG----------------SAS--NFGEFQSLMQHIQECVQR-KKFLLVLDDVWNEDY-------CKWEP 302 (955)
Q Consensus 249 ~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~~-------~~~~~ 302 (955)
..++..+.+.+.. ... ...+..++...+.+.... ++.+|||||++.-+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 113455666666666543 389999999965321 11222
Q ss_pred HHhhccCCCCCcEEEEecCChhH-HHh----------hcC-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHH
Q 002187 303 FYHCLKDGLHESKILITTRKETV-ACI----------MGS-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGR 370 (955)
Q Consensus 303 l~~~l~~~~~gs~iivTtr~~~v-~~~----------~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 370 (955)
+...+. ..++.++|+|++...+ ... .+. ...+.+.+|+.+|+.+++.......+.. . -.+.+.
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~---~~~~~~ 229 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-V---PENEIE 229 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-C---CHHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHH
Confidence 222222 2247889999887653 221 011 2478999999999999998754221111 1 134678
Q ss_pred HHHhhcCCChHHHHHHHHHhcCCCCHHHHHH-HHhhhchhhhhhhcchhhHH-HHhhhcCCHhHHHHHhhhccCCCCccc
Q 002187 371 EITRKCKGLPLAAKTIACLLRSKNTEKEWQN-ILESEIWEIEEVEKGLLAPL-LLSYNELPPKIKQCFTYCAVFPKDYRI 448 (955)
Q Consensus 371 ~i~~~c~glPlai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cfl~~~~fp~~~~i 448 (955)
+|++.|+|+|+++..++..+....+...+.. +.+. ....+...+ .+.+ + ++..+..+..+|. + .+
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-------AKGLIMGELEELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-------HHHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 8999999999999998876432222222211 1111 000011111 1222 2 7888999999987 2 23
Q ss_pred chHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHhhccCcccccccCCCcEeEEEe-ChHHHHHHH
Q 002187 449 WKYKLIELWMAQGYLSEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYACKM-HDIVHDFAQ 513 (955)
Q Consensus 449 ~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m-Hdlv~d~a~ 513 (955)
+...+....-+. . ++.+ ......|++.|++.+++.... + .|.+ |++++++.+
T Consensus 297 ~~~~l~~~~~~~-~----~~~~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVK-G----TKIP-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHT-T----CCCC-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHH-h----CCCC-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 445554443221 1 0111 355778999999999997641 2 2444 778777653
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=7.4e-16 Score=166.45 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=111.6
Q ss_pred CCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeC
Q 002187 589 LTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEN 668 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l 668 (955)
+++|++|++++|.+..+| .+..+++|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 445666666666665554 45666666666666665 555555 6666666666666665 55554 4556666666666
Q ss_pred CCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEE
Q 002187 669 DQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLH 748 (955)
Q Consensus 669 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 748 (955)
++| .+..+|. +..+++|+.|++..+.... +. .+..+++|+.|+++
T Consensus 115 ~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~----------------------------~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 115 TST-QITDVTP-LAGLSNLQVLYLDLNQITN-----IS----------------------------PLAGLTNLQYLSIG 159 (308)
T ss_dssp TTS-CCCCCGG-GTTCTTCCEEECCSSCCCC-----CG----------------------------GGGGCTTCCEEECC
T ss_pred CCC-CCCCchh-hcCCCCCCEEECCCCccCc-----Cc----------------------------cccCCCCccEEEcc
Confidence 665 3333332 4555555555443222111 00 02334566666666
Q ss_pred eecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCC
Q 002187 749 FDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGK 828 (955)
Q Consensus 749 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 828 (955)
.|.+.+. ..+..+++|+.|++++|.+.. + +. +..+++|+.|+|++| .+..++++..
T Consensus 160 ~n~l~~~-------------------~~l~~l~~L~~L~l~~n~l~~--~-~~-l~~l~~L~~L~L~~N-~l~~~~~l~~ 215 (308)
T 1h6u_A 160 NAQVSDL-------------------TPLANLSKLTTLKADDNKISD--I-SP-LASLPNLIEVHLKNN-QISDVSPLAN 215 (308)
T ss_dssp SSCCCCC-------------------GGGTTCTTCCEEECCSSCCCC--C-GG-GGGCTTCCEEECTTS-CCCBCGGGTT
T ss_pred CCcCCCC-------------------hhhcCCCCCCEEECCCCccCc--C-hh-hcCCCCCCEEEccCC-ccCccccccC
Confidence 6643321 125566778888888777765 4 32 667788888888887 5566666777
Q ss_pred CCCcceeeecCCC
Q 002187 829 LPSLEDLEILGMG 841 (955)
Q Consensus 829 l~~L~~L~L~~~~ 841 (955)
+++|+.|++.+++
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 8888888887665
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.7e-16 Score=181.08 Aligned_cols=214 Identities=17% Similarity=0.128 Sum_probs=164.6
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCE
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLER 641 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~ 641 (955)
+++|++|++.++..... .+..|..+++|++|+|++|.+...++ ++.+++|++|+|++|. ++.+|. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCC---CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CCCccEEEeeCCcCCCC---CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 44899999999875433 34458999999999999999987665 9999999999999998 888775 389999
Q ss_pred EeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeC
Q 002187 642 LNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRG 721 (955)
Q Consensus 642 LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~ 721 (955)
|++++|. +..+|. ..+++|++|++++|......|..++.+++|+.|++..+......
T Consensus 104 L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------- 160 (487)
T 3oja_A 104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------------------- 160 (487)
T ss_dssp EECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--------------------
T ss_pred EECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--------------------
Confidence 9999998 777665 35789999999999554445667888888888876544332100
Q ss_pred CCCCCCHhhhHHhhc-cCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCC
Q 002187 722 LGDFSDVGEARRAEL-EKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPK 800 (955)
Q Consensus 722 ~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 800 (955)
...+ ..+++|+.|+|++|.+.+. +....+++|+.|++++|.+.. + |
T Consensus 161 -----------~~~l~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~l~~L~~L~Ls~N~l~~--~-~ 207 (487)
T 3oja_A 161 -----------FAELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSSNKLAF--M-G 207 (487)
T ss_dssp -----------GGGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCSSCCCE--E-C
T ss_pred -----------hHHHhhhCCcccEEecCCCccccc-------------------cccccCCCCCEEECCCCCCCC--C-C
Confidence 0111 2456788888888864331 233457899999999999887 6 5
Q ss_pred ChhcccccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCC
Q 002187 801 NWVMSLTNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMG 841 (955)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 841 (955)
..+..+++|+.|+|++| .+..+|. ++.+++|+.|++.+|+
T Consensus 208 ~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred HhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 55888999999999999 5556665 7889999999998876
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=5e-17 Score=176.25 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=58.0
Q ss_pred ccEEEcCCCCccc--cccccc-------CCCCcceEEeecCCCcc-ccchhh--cCCCCCCEEeeCCCCCccccCccccC
Q 002187 592 LRTLKLDGSVIIE--IPTNIE-------KLLHLKYLNLSCQMEIE-RLPETL--CELYNLERLNVDSCSNLRELPQGIGK 659 (955)
Q Consensus 592 Lr~L~L~~~~~~~--lp~~i~-------~L~~Lr~L~L~~~~~i~-~LP~~i--~~L~~Lq~LdL~~~~~l~~lp~~i~~ 659 (955)
|++|+|++|.+.. +|..+. ++.+|++|+|++|. ++ .+|..+ +.+++|++|++++|. +..+|..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHH
Confidence 6667777776643 455444 57777777777776 44 566655 677777777777766 5555665555
Q ss_pred C-----CCCcEeeCCCCCCCcccc-cCCCCCCCCCccc
Q 002187 660 L-----RKLMHLENDQTDSLRYLP-VGIGELISLRRVS 691 (955)
Q Consensus 660 L-----~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~ 691 (955)
+ ++|++|++++|. +..+| ..++.+++|+.|+
T Consensus 143 l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp HHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEE
T ss_pred HHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEE
Confidence 5 677777776663 22222 3344444444443
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=1e-17 Score=199.59 Aligned_cols=352 Identities=14% Similarity=0.068 Sum_probs=226.7
Q ss_pred CceEEEEEEccCCCCc-chhhhccCCC-ceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc-----ccccccC
Q 002187 539 KKVFHLMLTLHRGASV-PISIWDNVKG-LRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE-----IPTNIEK 611 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~-~~~~~~~~~~-Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~ 611 (955)
..++++.+..+.+... +..+...+++ |++|.+.++....... ++....++++|++|+|++|.+.. ++..+.+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHH-HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHH-HHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4788888887765432 2223312445 9999998876322222 45556789999999999998643 3344567
Q ss_pred CCCcceEEeecCCCcc-----ccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCC---cccccCCCC
Q 002187 612 LLHLKYLNLSCQMEIE-----RLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSL---RYLPVGIGE 683 (955)
Q Consensus 612 L~~Lr~L~L~~~~~i~-----~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l---~~~p~~i~~ 683 (955)
+++|++|++++|. +. .++..+.++++|++|++++|. +..+|..+..+++|++|.++.+... ...+..+..
T Consensus 191 ~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 8999999999888 54 566667889999999999987 7778888899999999999754322 233455677
Q ss_pred CCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCC
Q 002187 684 LISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRR 763 (955)
Q Consensus 684 l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~ 763 (955)
+++|+.|.+..+.... ....+..+++|+.|.+.++. +. .......+..+++|+.|++..+ +
T Consensus 269 ~~~L~~L~l~~~~~~~----l~~~~~~~~~L~~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-~----------- 329 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNE----MPILFPFAAQIRKLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-I----------- 329 (592)
T ss_dssp CTTCCEEEETTCCTTT----GGGGGGGGGGCCEEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-G-----------
T ss_pred cccccccCccccchhH----HHHHHhhcCCCcEEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-c-----------
Confidence 7888877655432211 11224455667777777654 22 2223344678899999999833 1
Q ss_pred CCchhhHHHHhhhCCCCCCCCeEEEee----------ecCCCCCCCCChhcccccccEEEEeCCCCCCc--CCCCCC-CC
Q 002187 764 ENEEDEDERLLEALGPPPNLKELRIHE----------YRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEH--LPPLGK-LP 830 (955)
Q Consensus 764 ~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--l~~l~~-l~ 830 (955)
.+..+......+++|++|++++ |........+.....+++|++|+++.+ .++. +..++. ++
T Consensus 330 -----~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 330 -----GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLK 403 (592)
T ss_dssp -----HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCC
T ss_pred -----CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCC
Confidence 1222233334578899999994 333221010222346899999999555 4432 222444 88
Q ss_pred CcceeeecCC---CCceEeCcc--ccCCccCCCCccccCCCccceeeeccccc-ccccccccccccccccCcccceeeec
Q 002187 831 SLEDLEILGM---GSVKRVGNE--FLGVERDTDGSSVIAFPKLKELRFWSMKE-LEEWDFVTAVKGEIRIMPRLSSLSIV 904 (955)
Q Consensus 831 ~L~~L~L~~~---~~l~~i~~~--~~~~~~~~~~~~~~~fp~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~~~L~~L~i~ 904 (955)
+|+.|++.+| +.+...+.. +.. ...++++|+.|++++|.+ +...... .....+++|+.|+|+
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~--------~~~~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRS--------LLIGCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLG 471 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHH--------HHHHCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEEC
T ss_pred CCcEEEEeecCCCccccCchHHHHHHH--------HHHhCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeecc
Confidence 9999999753 333321110 000 023689999999987653 2221111 112358999999999
Q ss_pred cCcCCC--CCCCCCCCCCCcCeEEEecCC
Q 002187 905 YCPKLK--ALPDHLLQKTTLQRLSIFSCP 931 (955)
Q Consensus 905 ~c~~l~--~lp~~~~~l~~L~~L~l~~c~ 931 (955)
+|. +. .+|..+..+++|++|+|++|+
T Consensus 472 ~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 472 YVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 997 54 345555778999999999998
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=4.1e-15 Score=154.44 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=58.3
Q ss_pred EEEEeCCCCCCcCCC--CCCCCCcc-eeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccc
Q 002187 811 VLHLRWCSNCEHLPP--LGKLPSLE-DLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTA 887 (955)
Q Consensus 811 ~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~ 887 (955)
.|++++|..++.+|. ++.+++|+ .|+++++. ++.++...+. . ++|+.|++.+++.++.+..
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~-----------~-~~L~~L~L~~n~~l~~i~~--- 197 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN-----------G-TKLDAVYLNKNKYLTVIDK--- 197 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT-----------T-CEEEEEECTTCTTCCEECT---
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC-----------C-CCCCEEEcCCCCCcccCCH---
Confidence 555555533444433 45555666 66665443 3344432221 2 5677777776644554332
Q ss_pred cccccccC-cccceeeeccCcCCCCCCCCCCCCCCcCeEEEecCCCc
Q 002187 888 VKGEIRIM-PRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPIL 933 (955)
Q Consensus 888 ~~~~~~~~-~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 933 (955)
..+..+ ++|+.|++++|+ ++.+|.. .+++|+.|.+.+|..|
T Consensus 198 --~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 198 --DAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp --TTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC---
T ss_pred --HHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCccCC
Confidence 134566 888888888875 7777765 5778888888877653
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=3.4e-15 Score=158.31 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=52.7
Q ss_pred CCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEe
Q 002187 588 KLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHL 666 (955)
Q Consensus 588 ~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L 666 (955)
.++.|+.|+++++.+..++ .++.+++|++|++++|. +..+| .++++++|++|++++|. +..+|.. +..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 4556777777777766554 36667777777777776 66654 46677777777777766 5555443 4667777777
Q ss_pred eCCCC
Q 002187 667 ENDQT 671 (955)
Q Consensus 667 ~l~~~ 671 (955)
++++|
T Consensus 115 ~L~~n 119 (272)
T 3rfs_A 115 VLVEN 119 (272)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 77666
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=8e-15 Score=155.29 Aligned_cols=195 Identities=23% Similarity=0.321 Sum_probs=107.5
Q ss_pred cccEEEcCCCCcccccccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCccccCccc-cCCCCCcEeeC
Q 002187 591 CLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRELPQGI-GKLRKLMHLEN 668 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~~i-~~L~~L~~L~l 668 (955)
.++.++++++.++.+|..+. .+|++|+|++|. ++.+|. .+.++++|++|++++|. +..+|..+ ..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 35566666666666665443 456666666666 555553 45666666666666665 55555443 55666666666
Q ss_pred CCCCCCccccc-CCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEE
Q 002187 669 DQTDSLRYLPV-GIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGL 747 (955)
Q Consensus 669 ~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L 747 (955)
++| .+..+|. .+..+++|+.|++..+.... +. ...+..+++|+.|++
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~------~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKS-------------------------LP------PRVFDSLTKLTYLSL 140 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCC-------------------------CC------TTTTTTCTTCCEEEC
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccCe-------------------------eC------HHHhCcCcCCCEEEC
Confidence 665 2333333 23444555544433221110 00 011233455666666
Q ss_pred EeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--
Q 002187 748 HFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-- 825 (955)
Q Consensus 748 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-- 825 (955)
++|.+.... ...+..+++|+.|++++|.+.. +++..+..+++|+.|+|++| .++.+|.
T Consensus 141 s~n~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 200 (270)
T 2o6q_A 141 GYNELQSLP-----------------KGVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNN-QLKRVPEGA 200 (270)
T ss_dssp CSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCCcCCccC-----------------HhHccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCC-cCCcCCHHH
Confidence 665443221 1134556677777777776665 54555667777777777777 4445544
Q ss_pred CCCCCCcceeeecCCC
Q 002187 826 LGKLPSLEDLEILGMG 841 (955)
Q Consensus 826 l~~l~~L~~L~L~~~~ 841 (955)
+..+++|+.|+|.+++
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccccCCCEEEecCCC
Confidence 6667777777776654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=6.7e-15 Score=157.23 Aligned_cols=198 Identities=22% Similarity=0.216 Sum_probs=109.2
Q ss_pred cCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCccccCCCCCcE
Q 002187 587 DKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMH 665 (955)
Q Consensus 587 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~ 665 (955)
.++++|+.++++++.++.+|..+. .+|++|+|++|. ++.++ ..+.++++|++|++++|. +..+|.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 445555555665555555555443 455566666555 44432 345555566666665555 5554433 45555666
Q ss_pred eeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcE
Q 002187 666 LENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIEL 745 (955)
Q Consensus 666 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 745 (955)
|++++| .+..+|..+..+++|+.|++..+.... + . ...+..+++|+.|
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~--------l-----------------~------~~~~~~l~~L~~L 129 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTS--------L-----------------P------LGALRGLGELQEL 129 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCC--------C-----------------C------SSTTTTCTTCCEE
T ss_pred EECCCC-cCCcCchhhccCCCCCEEECCCCcCcc--------c-----------------C------HHHHcCCCCCCEE
Confidence 666555 344555555555555555443322111 0 0 0112334455666
Q ss_pred EEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC
Q 002187 746 GLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP 825 (955)
Q Consensus 746 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~ 825 (955)
+|++|.+.... ...+..+++|+.|++++|.+.. +++..+..+++|+.|+|++| .++.+|.
T Consensus 130 ~L~~N~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N-~l~~ip~ 189 (290)
T 1p9a_G 130 YLKGNELKTLP-----------------PGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQEN-SLYTIPK 189 (290)
T ss_dssp ECTTSCCCCCC-----------------TTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ECCCCCCCccC-----------------hhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCC-cCCccCh
Confidence 66555443221 1234556777777777777766 64555667788888888877 5555655
Q ss_pred -CCCCCCcceeeecCCC
Q 002187 826 -LGKLPSLEDLEILGMG 841 (955)
Q Consensus 826 -l~~l~~L~~L~L~~~~ 841 (955)
+..+++|+.|+|.+++
T Consensus 190 ~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCCCSEEECCSCC
T ss_pred hhcccccCCeEEeCCCC
Confidence 6667777888777655
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=6.1e-15 Score=156.84 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=65.7
Q ss_pred CcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEe
Q 002187 590 TCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHL 666 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L 666 (955)
+.|++|++++|.+..++. .++++++|++|+|++|. ++.+|. .+.++++|++|++++|. +..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 357777777777776654 67777777777777776 666554 56777777777777776 55544 456777777777
Q ss_pred eCCCCCCCccccc-CCCCCCCCCcccee
Q 002187 667 ENDQTDSLRYLPV-GIGELISLRRVSKL 693 (955)
Q Consensus 667 ~l~~~~~l~~~p~-~i~~l~~L~~L~~~ 693 (955)
++++|. +..++. .++.+++|++|++.
T Consensus 106 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 106 VAVETN-LASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECC
T ss_pred ECCCCC-ccccCchhcccCCCCCEEECc
Confidence 777763 333322 35555555555443
No 85
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=2.3e-13 Score=150.71 Aligned_cols=292 Identities=11% Similarity=0.106 Sum_probs=174.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-----ccHH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-----FDEF 249 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 249 (955)
.+..|+||+++++.+.+ +.. +++.|+|++|+|||||++.+++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 731 48999999999999999999984 322 2578887643 3444
Q ss_pred HHHHHHHHHHcC-------------CC-----C-----------CCCChHHHHHHHHHHhcCceEEEEEeCCCCccc---
Q 002187 250 RIARAIIEALTG-------------SA-----S-----------NFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY--- 297 (955)
Q Consensus 250 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--- 297 (955)
.++..+.+.+.. .. . .......+...+.+.-. ++++|||||++.-+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555554444310 00 0 11234445555544322 499999999965321
Q ss_pred cChhhHHhhccCCCCCcEEEEecCChhHHH-h---------h-cC-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchH
Q 002187 298 CKWEPFYHCLKDGLHESKILITTRKETVAC-I---------M-GS-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENL 365 (955)
Q Consensus 298 ~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 365 (955)
..|..+...+.....+.++|+|++...... . . +. ...+.+.+|+.+++.+++...+...+. ....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc-
Confidence 234333333332224678999999765322 1 1 11 257899999999999999875421111 1111
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhcCCCCHHHHHHHHhhhchhhhhhhcchhhHHH-Hhhh--cCCHhHHHHHhhhccC
Q 002187 366 EEIGREITRKCKGLPLAAKTIACLLRSKNTEKEWQNILESEIWEIEEVEKGLLAPLL-LSYN--ELPPKIKQCFTYCAVF 442 (955)
Q Consensus 366 ~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cfl~~~~f 442 (955)
...|++.|+|+|+++..++..+....+...|..-. . ......+...+. +.+. .||+..+..+..+|.
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQT---L---EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHH---H---HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHH---H---HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 17899999999999999987764333333332211 0 000011111122 2221 678899999999998
Q ss_pred CCCcccchHHHHHHHH-HcCCcccCCCCcHHHHHHHHHHHHhhccCcccccccCCCcEeEEE-eChHHHHHH
Q 002187 443 PKDYRIWKYKLIELWM-AQGYLSEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYACK-MHDIVHDFA 512 (955)
Q Consensus 443 p~~~~i~~~~Li~~W~-a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mHdlv~d~a 512 (955)
+. +...+....- ..|. .........+++.|++.++|.... + .|+ .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 21 3444432211 1121 011345678999999999997642 2 245 478887753
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=4.1e-16 Score=171.33 Aligned_cols=256 Identities=15% Similarity=0.157 Sum_probs=137.6
Q ss_pred CceEEEecCCCchhhHHHHHHHhcCC--CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccc--cchhhcCCCCC
Q 002187 564 GLRSLLVKSDEYSWSIEVLRQLFDKL--TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIER--LPETLCELYNL 639 (955)
Q Consensus 564 ~Lr~L~l~~~~~~~~~~~l~~~~~~l--~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~--LP~~i~~L~~L 639 (955)
.++++++.++... +..+..+ +.+++|+++++.+...+..+..+++|++|+|++|. +.. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCC
Confidence 3566666655432 1123333 56677777777666655556666777777777666 542 56666667777
Q ss_pred CEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceE
Q 002187 640 ERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRI 719 (955)
Q Consensus 640 q~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i 719 (955)
++|++++|......|..+..+++|++|++++|..++.
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------------------------------------------- 157 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------------------------------------- 157 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-------------------------------------------
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-------------------------------------------
Confidence 7777777652224555566666777777666632221
Q ss_pred eCCCCCCCHhhhHHhhccCCCCCCcEEEEee-cCCCCCcccccCCCCchhhHHHHhhhCCCCC-CCCeEEEeeec--CCC
Q 002187 720 RGLGDFSDVGEARRAELEKKKNLIELGLHFD-HIRDGDEEQAGRRENEEDEDERLLEALGPPP-NLKELRIHEYR--GRR 795 (955)
Q Consensus 720 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~~ 795 (955)
......+..+++|+.|++++| .+.+ ..+...+..++ +|++|++++|. ...
T Consensus 158 ----------~~l~~~~~~~~~L~~L~l~~~~~l~~----------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 158 ----------FALQTLLSSCSRLDELNLSWCFDFTE----------------KHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp ----------HHHHHHHHHCTTCCEEECCCCTTCCH----------------HHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred ----------HHHHHHHhcCCCCCEEcCCCCCCcCh----------------HHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 001111233445555555555 3211 11222334455 77777777763 211
Q ss_pred CCCCCChhcccccccEEEEeCCCCCC--cCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeee
Q 002187 796 NVVPKNWVMSLTNLRVLHLRWCSNCE--HLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRF 873 (955)
Q Consensus 796 ~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 873 (955)
..+ |..+..+++|+.|++++|..++ .++.++.+++|++|+|.+|..+...+ + . .+..+|+|+.|++
T Consensus 212 ~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~-~--------~l~~~~~L~~L~l 279 (336)
T 2ast_B 212 SDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--L-L--------ELGEIPTLKTLQV 279 (336)
T ss_dssp HHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG--G-G--------GGGGCTTCCEEEC
T ss_pred HHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH--H-H--------HHhcCCCCCEEec
Confidence 113 4555677788888887775333 24446777888888887775322111 1 0 1235788888888
Q ss_pred cccccccccccccccccccccC-cccceeeeccCcCCCCCCCCCC
Q 002187 874 WSMKELEEWDFVTAVKGEIRIM-PRLSSLSIVYCPKLKALPDHLL 917 (955)
Q Consensus 874 ~~~~~L~~~~~~~~~~~~~~~~-~~L~~L~i~~c~~l~~lp~~~~ 917 (955)
.+| +.... +..+ .+|..|++++|..-...|..+.
T Consensus 280 ~~~--i~~~~--------~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 280 FGI--VPDGT--------LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTS--SCTTC--------HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCc--cCHHH--------HHHHHhhCcceEEecccCccccCCccc
Confidence 876 22211 1222 2356666766653333444433
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=4.3e-14 Score=155.71 Aligned_cols=237 Identities=17% Similarity=0.191 Sum_probs=160.8
Q ss_pred cEEEcCCCCcccccccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCC
Q 002187 593 RTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQ 670 (955)
Q Consensus 593 r~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~ 670 (955)
++++.+++.++++|..+ ..++++|+|++|. |+.+|. .+.++++|++|+|++|..++.+|.. +.++++|+++....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888888888876 3688999999988 889886 5789999999999998855667654 67888888755544
Q ss_pred CCCCcccc-cCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEe
Q 002187 671 TDSLRYLP-VGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHF 749 (955)
Q Consensus 671 ~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 749 (955)
++.+..+| ..+..+++|+.|++..+.... +.... +....++..|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--------~~~~~-----------------------~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH--------LPDVH-----------------------KIHSLQKVLLDIQD 137 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS--------CCCCT-----------------------TCCBSSCEEEEEES
T ss_pred CCcccccCchhhhhcccccccccccccccc--------CCchh-----------------------hcccchhhhhhhcc
Confidence 44666664 457888888888887765432 00000 01112344444543
Q ss_pred e-cCCCCCcccccCCCCchhhHHHHhhhCCCC-CCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--
Q 002187 750 D-HIRDGDEEQAGRRENEEDEDERLLEALGPP-PNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP-- 825 (955)
Q Consensus 750 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-- 825 (955)
+ .+.... ...+... ..++.|++++|.+.. + |.......+|+.|.+.++..++.+|.
T Consensus 138 ~~~i~~l~-----------------~~~f~~~~~~l~~L~L~~N~i~~--i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 138 NINIHTIE-----------------RNSFVGLSFESVILWLNKNGIQE--I-HNSAFNGTQLDELNLSDNNNLEELPNDV 197 (350)
T ss_dssp CTTCCEEC-----------------TTSSTTSBSSCEEEECCSSCCCE--E-CTTSSTTEEEEEEECTTCTTCCCCCTTT
T ss_pred cccccccc-----------------ccchhhcchhhhhhccccccccC--C-ChhhccccchhHHhhccCCcccCCCHHH
Confidence 2 111000 0122232 468889999988877 6 44444567899999988778888876
Q ss_pred CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeecc
Q 002187 826 LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVY 905 (955)
Q Consensus 826 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~ 905 (955)
++.+++|++|+|+++. ++.++.. .|.+|+.|.+.++.+++.++. +..+++|+.+++.+
T Consensus 198 f~~l~~L~~LdLs~N~-l~~lp~~--------------~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FHGASGPVILDISRTR-IHSLPSY--------------GLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp TTTEECCSEEECTTSC-CCCCCSS--------------SCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred hccCcccchhhcCCCC-cCccChh--------------hhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 7889999999998775 5554431 577788888877777665543 45788888888865
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=1.6e-14 Score=153.09 Aligned_cols=192 Identities=23% Similarity=0.342 Sum_probs=136.1
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchh-hcCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPET-LCELYNL 639 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~L 639 (955)
.+++|+.|.+.++....... +..+++|++|++++|.+..++ .++++++|++|+|++|. ++.+|.. ++++++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~-----l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT-----GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCcccccc-----cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCC
Confidence 67889999998876543322 788999999999999998864 78999999999999998 8877754 6899999
Q ss_pred CEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEecCccCCccCccccccCCCCCCc
Q 002187 640 ERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQC 717 (955)
Q Consensus 640 q~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 717 (955)
++|++++|. +..+|.. +..+++|++|++++| .+..+|.. ++.+++|+.|
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L--------------------------- 162 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTEL--------------------------- 162 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE---------------------------
T ss_pred CEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEE---------------------------
Confidence 999999998 7777655 688999999999988 44444432 3444444444
Q ss_pred eEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCC
Q 002187 718 RIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNV 797 (955)
Q Consensus 718 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 797 (955)
++++|.+.... ...+..+++|+.|++++|.+..
T Consensus 163 ----------------------------~l~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~-- 195 (272)
T 3rfs_A 163 ----------------------------DLSYNQLQSLP-----------------EGVFDKLTQLKDLRLYQNQLKS-- 195 (272)
T ss_dssp ----------------------------ECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCSC--
T ss_pred ----------------------------ECCCCCcCccC-----------------HHHhcCCccCCEEECCCCcCCc--
Confidence 34333322111 1123455677777777777665
Q ss_pred CCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCC
Q 002187 798 VPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMG 841 (955)
Q Consensus 798 ~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 841 (955)
+++.++..+++|+.|+|++|.. .+.+|+|+.|+++.+.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINK 233 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHH
T ss_pred cCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHh
Confidence 5466667788888888887732 3456677777765443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=3.8e-14 Score=153.41 Aligned_cols=229 Identities=16% Similarity=0.099 Sum_probs=154.3
Q ss_pred cCCCceEEEecCCCchh--hHHHHHHHhcCCCcccEEEcCCCCccc-ccccc--cCCCCcceEEeecCCCccc-cc----
Q 002187 561 NVKGLRSLLVKSDEYSW--SIEVLRQLFDKLTCLRTLKLDGSVIIE-IPTNI--EKLLHLKYLNLSCQMEIER-LP---- 630 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~--~~~~l~~~~~~l~~Lr~L~L~~~~~~~-lp~~i--~~L~~Lr~L~L~~~~~i~~-LP---- 630 (955)
....++.+.+....... ... +.. +..++.|++|++++|.+.. .|..+ +.+.+|++|+|++|. +.. .|
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~ 138 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVG-ALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAE 138 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHH-HHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHH-HHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHH
Confidence 34456778877765422 111 112 2345679999999999864 56676 899999999999998 664 33
Q ss_pred hhhcCCCCCCEEeeCCCCCccccC-ccccCCCCCcEeeCCCCCCCcc--cc--cCCCCCCCCCccceeEecCccCCccCc
Q 002187 631 ETLCELYNLERLNVDSCSNLRELP-QGIGKLRKLMHLENDQTDSLRY--LP--VGIGELISLRRVSKLVVGGGYDKACSL 705 (955)
Q Consensus 631 ~~i~~L~~Lq~LdL~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~p--~~i~~l~~L~~L~~~~~~~~~~~~~~l 705 (955)
..+..+++|++|++++|. +..+| ..+..+++|++|++++|..... ++ ..++.+++|++|++..+...
T Consensus 139 ~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------- 210 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------- 210 (310)
T ss_dssp HHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-------
T ss_pred HHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-------
Confidence 345689999999999998 55554 6788999999999999953321 22 22356677777665433211
Q ss_pred cccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCe
Q 002187 706 GSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKE 785 (955)
Q Consensus 706 ~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 785 (955)
.........+..+++|+.|+|++|.+.+..+. ....+..+++|++
T Consensus 211 ---------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------------~~~~~~~~~~L~~ 255 (310)
T 4glp_A 211 ---------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------------SAPRCMWSSALNS 255 (310)
T ss_dssp ---------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS--------------CCSSCCCCTTCCC
T ss_pred ---------------------chHHHHHHHHhcCCCCCEEECCCCCCCccchh--------------hHHhccCcCcCCE
Confidence 11111112235567888888888876543210 0112333478999
Q ss_pred EEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCC
Q 002187 786 LRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMG 841 (955)
Q Consensus 786 L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 841 (955)
|++++|.+.. + |.++ +++|+.|+|++| .++.+|.+..+++|+.|+|++++
T Consensus 256 L~Ls~N~l~~--l-p~~~--~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 256 LNLSFAGLEQ--V-PKGL--PAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSSCCCS--C-CSCC--CSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred EECCCCCCCc--h-hhhh--cCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 9999888876 6 5554 378899999888 66677777888888888887765
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.4e-14 Score=151.78 Aligned_cols=152 Identities=23% Similarity=0.244 Sum_probs=96.1
Q ss_pred cccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCcccccCCCCCCC
Q 002187 608 NIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPVGIGELIS 686 (955)
Q Consensus 608 ~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~ 686 (955)
.++++.+|+.++++++. ++.+|..+. ++|++|++++|. +..+ |..+..+++|++|++++| .+..+|.. +.+++
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTT
T ss_pred cccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCc
Confidence 36778889999999888 889987764 689999999988 5555 456888999999999887 33333322 33333
Q ss_pred CCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCc
Q 002187 687 LRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENE 766 (955)
Q Consensus 687 L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 766 (955)
|+.|++++|.+...
T Consensus 79 -------------------------------------------------------L~~L~Ls~N~l~~l----------- 92 (290)
T 1p9a_G 79 -------------------------------------------------------LGTLDLSHNQLQSL----------- 92 (290)
T ss_dssp -------------------------------------------------------CCEEECCSSCCSSC-----------
T ss_pred -------------------------------------------------------CCEEECCCCcCCcC-----------
Confidence 33344433322111
Q ss_pred hhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCC
Q 002187 767 EDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMG 841 (955)
Q Consensus 767 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 841 (955)
+..+..+++|+.|++++|.+.. +++..+..+++|+.|+|++| .++.+|. +..+++|+.|+|+++.
T Consensus 93 -------~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 93 -------PLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp -------CCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred -------chhhccCCCCCEEECCCCcCcc--cCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc
Confidence 1123345566666666666655 54556666777777777766 4444444 4566666666665543
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.7e-15 Score=166.38 Aligned_cols=125 Identities=20% Similarity=0.155 Sum_probs=98.5
Q ss_pred ceEEEEEEccCCCCcchhhhccC--CCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc--ccccccCCCCc
Q 002187 540 KVFHLMLTLHRGASVPISIWDNV--KGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE--IPTNIEKLLHL 615 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~L~~L 615 (955)
.++++.+..+.+. +..+. .+ ++++.|.+.++...... +. +..+++|++|++++|.+.. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~-~~~~~~l~~L~l~~n~l~~~~---~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTG-RLLSQGVIAFRCPRSFMDQPL---AE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC--HHHHH-HHHHTTCSEEECTTCEECSCC---CS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC--HHHHH-hhhhccceEEEcCCccccccc---hh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 4566777666544 33333 55 89999999887643221 22 5678999999999999764 78889999999
Q ss_pred ceEEeecCCCcc-ccchhhcCCCCCCEEeeCCCCCccc--cCccccCCCCCcEeeCCCCC
Q 002187 616 KYLNLSCQMEIE-RLPETLCELYNLERLNVDSCSNLRE--LPQGIGKLRKLMHLENDQTD 672 (955)
Q Consensus 616 r~L~L~~~~~i~-~LP~~i~~L~~Lq~LdL~~~~~l~~--lp~~i~~L~~L~~L~l~~~~ 672 (955)
++|+|++|. +. ..|..++++++|++|++++|..+.. +|..+..+++|++|++++|.
T Consensus 121 ~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 121 QNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp SEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred CEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 999999998 65 6788899999999999999954663 77778899999999999883
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.8e-14 Score=153.30 Aligned_cols=129 Identities=22% Similarity=0.198 Sum_probs=104.4
Q ss_pred CCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccc-hhhcCCCCCC
Q 002187 563 KGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLE 640 (955)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq 640 (955)
++|++|++.++...... +..|.++++|++|++++|.+..++. .++++++|++|+|++|. ++.+| ..+.++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEEC---TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccC---HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCcccc
Confidence 57999999998754332 2348899999999999999988764 78999999999999999 87766 6789999999
Q ss_pred EEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCc-ccccCCCCCCCCCccceeEec
Q 002187 641 RLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLR-YLPVGIGELISLRRVSKLVVG 696 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~-~~p~~i~~l~~L~~L~~~~~~ 696 (955)
+|++++|. +..++. .+..+++|++|++++|.... .+|..++.+++|+.|++..+.
T Consensus 104 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 99999998 666655 68899999999999984322 257777888888887765543
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.1e-14 Score=151.24 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=41.1
Q ss_pred cccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCC-CCCccccCc-cccCCCCCcEe
Q 002187 591 CLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDS-CSNLRELPQ-GIGKLRKLMHL 666 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~-~~~l~~lp~-~i~~L~~L~~L 666 (955)
.|++|++++|.+..+|. .++++++|++|++++|..++.+|. .+.++++|++|++++ |. +..+|. .+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 45555555555555543 455555555555555532444443 345555555555555 33 444442 34455555555
Q ss_pred eCCCC
Q 002187 667 ENDQT 671 (955)
Q Consensus 667 ~l~~~ 671 (955)
++++|
T Consensus 111 ~l~~n 115 (239)
T 2xwt_C 111 GIFNT 115 (239)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 55554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=3.5e-14 Score=153.24 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=128.1
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+++|++|.+.++....+. .+..+++|++|+|++|.+..++. ++.+++|++|+|++|. ++.+| .+.++++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-----~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCccCch-----hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCC
Confidence 5677888888777643322 26778888888888888887776 8888888888888887 77776 478888888
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
+|++++|. +..+|. +..+++|++|++++| .+..++. ++.+++|+.|++..+.... +..
T Consensus 111 ~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~-----~~~------------- 168 (308)
T 1h6u_A 111 TLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSD-----LTP------------- 168 (308)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCC-----CGG-------------
T ss_pred EEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCC-----Chh-------------
Confidence 88888887 777764 788888888888887 4455554 6777777777664432221 111
Q ss_pred CCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCC
Q 002187 721 GLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPK 800 (955)
Q Consensus 721 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p 800 (955)
+..+++|+.|+++.|.+.+. ..+..+++|+.|++++|.+.. + +
T Consensus 169 ---------------l~~l~~L~~L~l~~n~l~~~-------------------~~l~~l~~L~~L~L~~N~l~~--~-~ 211 (308)
T 1h6u_A 169 ---------------LANLSKLTTLKADDNKISDI-------------------SPLASLPNLIEVHLKNNQISD--V-S 211 (308)
T ss_dssp ---------------GTTCTTCCEEECCSSCCCCC-------------------GGGGGCTTCCEEECTTSCCCB--C-G
T ss_pred ---------------hcCCCCCCEEECCCCccCcC-------------------hhhcCCCCCCEEEccCCccCc--c-c
Confidence 23345666666666644321 114456677777777776665 4 3
Q ss_pred ChhcccccccEEEEeCC
Q 002187 801 NWVMSLTNLRVLHLRWC 817 (955)
Q Consensus 801 ~~~~~l~~L~~L~L~~~ 817 (955)
.+..+++|+.|+|++|
T Consensus 212 -~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 212 -PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -GGTTCTTCCEEEEEEE
T ss_pred -cccCCCCCCEEEccCC
Confidence 2566777777777777
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=7.9e-17 Score=191.99 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=96.5
Q ss_pred ccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCC-Cccc--ccccccCCCCcceEEeecCCCccc-----cch
Q 002187 560 DNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGS-VIIE--IPTNIEKLLHLKYLNLSCQMEIER-----LPE 631 (955)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~-~~~~--lp~~i~~L~~Lr~L~L~~~~~i~~-----LP~ 631 (955)
..+++|++|.+.++..... .+..+...+++|++|+|++| .+.. ++..+.++++|++|+|++|. ++. ++.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~ 178 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDD--CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSH 178 (594)
T ss_dssp HHCTTCCEEEEESCBCCHH--HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGG
T ss_pred HhCCCCCeEEeeCcEEcHH--HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHH
Confidence 3688999999998864322 12333347899999999999 4544 55556689999999999987 543 444
Q ss_pred hhcCCCCCCEEeeCCCC-Cc--cccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCcccee
Q 002187 632 TLCELYNLERLNVDSCS-NL--RELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKL 693 (955)
Q Consensus 632 ~i~~L~~Lq~LdL~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 693 (955)
....+++|++|++++|. .+ ..++.-+..+++|++|++++|..+..+|..+..+++|+.|.+.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 44578899999999986 11 1233334568999999999997666777778888999988754
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.3e-13 Score=146.00 Aligned_cols=176 Identities=27% Similarity=0.354 Sum_probs=116.3
Q ss_pred CcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEe
Q 002187 590 TCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHL 666 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L 666 (955)
+.|+.|+|++|.+..+|. .++++++|++|+|++|. ++.+|.. +.++++|++|++++|. +..+|.. +..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 457777777777776654 57777777777777777 7677654 3667777777777776 6666543 4667777777
Q ss_pred eCCCCCCCccccc-CCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcE
Q 002187 667 ENDQTDSLRYLPV-GIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIEL 745 (955)
Q Consensus 667 ~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 745 (955)
++++|. +..+|. .++.+++|+.|++..+.... + + ...+..+++|+.|
T Consensus 115 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~-----------------~------~~~~~~l~~L~~L 162 (270)
T 2o6q_A 115 RLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS--------L-----------------P------KGVFDKLTSLKEL 162 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC--------C-----------------C------TTTTTTCTTCCEE
T ss_pred ECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc--------c-----------------C------HhHccCCccccee
Confidence 777773 344433 35667777776654332211 0 0 0113345677777
Q ss_pred EEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCC
Q 002187 746 GLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCS 818 (955)
Q Consensus 746 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 818 (955)
+++.|.+.... ...+..+++|+.|++++|.+.. +++..+..+++|+.|+|++|+
T Consensus 163 ~L~~n~l~~~~-----------------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKRVP-----------------EGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSCCC-----------------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcEeC-----------------hhHhccCCCcCEEECCCCcCCc--CCHHHhccccCCCEEEecCCC
Confidence 77777554322 1245667889999999998877 656667889999999999884
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=9.8e-16 Score=171.68 Aligned_cols=215 Identities=18% Similarity=0.125 Sum_probs=132.3
Q ss_pred HHHHhcCCCcccEEEcCCCCccc-----ccccccCCCCcceEEeecCCCcc----ccchhh-------cCCCCCCEEeeC
Q 002187 582 LRQLFDKLTCLRTLKLDGSVIIE-----IPTNIEKLLHLKYLNLSCQMEIE----RLPETL-------CELYNLERLNVD 645 (955)
Q Consensus 582 l~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~~i~----~LP~~i-------~~L~~Lq~LdL~ 645 (955)
+...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|. +. .+|..+ .++++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34457888999999999998765 44567889999999999975 43 345444 789999999999
Q ss_pred CCCCccc-----cCccccCCCCCcEeeCCCCCCCcc----cccCCCCC---------CCCCccceeEecCccCCccCccc
Q 002187 646 SCSNLRE-----LPQGIGKLRKLMHLENDQTDSLRY----LPVGIGEL---------ISLRRVSKLVVGGGYDKACSLGS 707 (955)
Q Consensus 646 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~----~p~~i~~l---------~~L~~L~~~~~~~~~~~~~~l~~ 707 (955)
+|. +.. +|..+..+++|++|++++|..... ++..+..+ ++|++|++..+....
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------- 173 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------- 173 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------
Confidence 998 554 777889999999999999843211 22222222 455555443322210
Q ss_pred cccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh-hCCCCCCCCeE
Q 002187 708 LKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLE-ALGPPPNLKEL 786 (955)
Q Consensus 708 L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L 786 (955)
.........+..+++|+.|++++|.+.. .......+ .+..+++|+.|
T Consensus 174 -------------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~-------------~g~~~l~~~~l~~~~~L~~L 221 (386)
T 2ca6_A 174 -------------------GSMKEWAKTFQSHRLLHTVKMVQNGIRP-------------EGIEHLLLEGLAYCQELKVL 221 (386)
T ss_dssp -------------------GGHHHHHHHHHHCTTCCEEECCSSCCCH-------------HHHHHHHHTTGGGCTTCCEE
T ss_pred -------------------HHHHHHHHHHHhCCCcCEEECcCCCCCH-------------hHHHHHHHHHhhcCCCccEE
Confidence 0011111234455677777777664321 01112233 55566777777
Q ss_pred EEeeecCC----CCCCCCChhcccccccEEEEeCCCCCCcC-----CC-C--CCCCCcceeeecCCC
Q 002187 787 RIHEYRGR----RNVVPKNWVMSLTNLRVLHLRWCSNCEHL-----PP-L--GKLPSLEDLEILGMG 841 (955)
Q Consensus 787 ~l~~~~~~----~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-----~~-l--~~l~~L~~L~L~~~~ 841 (955)
+|++|.+. . .+ |.++..+++|+.|+|++|. ++.. +. + +.+++|+.|+|++|.
T Consensus 222 ~Ls~n~l~~~g~~-~l-~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 222 DLQDNTFTHLGSS-AL-AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp ECCSSCCHHHHHH-HH-HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred ECcCCCCCcHHHH-HH-HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 77776652 1 03 5556667777777777773 3321 22 2 346777777776665
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1.8e-15 Score=169.49 Aligned_cols=246 Identities=17% Similarity=0.120 Sum_probs=156.1
Q ss_pred cchhhhccCCCceEEEecCCCchhhH-HHHHHHhcCCCcccEEEcCCCCccc----ccccc-------cCCCCcceEEee
Q 002187 554 VPISIWDNVKGLRSLLVKSDEYSWSI-EVLRQLFDKLTCLRTLKLDGSVIIE----IPTNI-------EKLLHLKYLNLS 621 (955)
Q Consensus 554 ~~~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~~Lr~L~L~~~~~~~----lp~~i-------~~L~~Lr~L~L~ 621 (955)
++..+. .+++|++|.+.++...... ..+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|+
T Consensus 24 l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 444454 7899999999998754321 2244457899999999999986543 34444 789999999999
Q ss_pred cCCCccc-----cchhhcCCCCCCEEeeCCCCCccc-----cCccccCC---------CCCcEeeCCCCCCC-cccc---
Q 002187 622 CQMEIER-----LPETLCELYNLERLNVDSCSNLRE-----LPQGIGKL---------RKLMHLENDQTDSL-RYLP--- 678 (955)
Q Consensus 622 ~~~~i~~-----LP~~i~~L~~Lq~LdL~~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~l-~~~p--- 678 (955)
+|. ++. +|..+.++++|++|+|++|. +.. ++..+..+ ++|++|++++|... ..+|
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 998 765 88889999999999999998 542 34444555 99999999998532 2333
Q ss_pred cCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcc
Q 002187 679 VGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEE 758 (955)
Q Consensus 679 ~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~ 758 (955)
..+..+++|++|++..+.... . .........+..+++|+.|+|++|.+..
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~---~-----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~---- 230 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRP---E-----------------------GIEHLLLEGLAYCQELKVLDLQDNTFTH---- 230 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCH---H-----------------------HHHHHHHTTGGGCTTCCEEECCSSCCHH----
T ss_pred HHHHhCCCcCEEECcCCCCCH---h-----------------------HHHHHHHHHhhcCCCccEEECcCCCCCc----
Confidence 345566677766654433221 0 0000111145556677777777764211
Q ss_pred cccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCC--CCChhc--ccccccEEEEeCCCCCC----cCCC-C-CC
Q 002187 759 QAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVV--PKNWVM--SLTNLRVLHLRWCSNCE----HLPP-L-GK 828 (955)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~p~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~~ 828 (955)
.....++..+..+++|+.|+|++|.+..... .+.++. .+++|+.|+|++|.... .+|. + .+
T Consensus 231 ---------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 231 ---------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ---------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 0112344556667777777777776543100 023342 26777888887773222 1443 3 44
Q ss_pred CCCcceeeecCCC
Q 002187 829 LPSLEDLEILGMG 841 (955)
Q Consensus 829 l~~L~~L~L~~~~ 841 (955)
+|+|++|+|++|+
T Consensus 302 l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 302 MPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTSB
T ss_pred CCCceEEEccCCc
Confidence 6777777776665
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=6.7e-14 Score=149.62 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=55.6
Q ss_pred CCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEee
Q 002187 588 KLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLE 667 (955)
Q Consensus 588 ~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~ 667 (955)
.++.|+.|++++|.+..++ .++.+++|++|+|++|. ++.+|. ++++++|++|++++|. +..+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEE
Confidence 3456777777777776664 36777777777777777 666666 7777777777777776 666553 67777777777
Q ss_pred CCCC
Q 002187 668 NDQT 671 (955)
Q Consensus 668 l~~~ 671 (955)
+++|
T Consensus 119 L~~n 122 (291)
T 1h6t_A 119 LEHN 122 (291)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7766
No 100
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.9e-11 Score=136.56 Aligned_cols=297 Identities=12% Similarity=0.019 Sum_probs=183.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc----c--CCceEEEEeCCcc-cH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK----K--FEKRMWICVSELF-DE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~ 248 (955)
+..++||+++++.+.+++..... ....+.+.|+|++|+||||+|+.+++...-.. . ....+|++++... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36899999999999988864211 12455899999999999999999998432110 1 2346788887777 88
Q ss_pred HHHHHHHHHHHcCCCCC--CCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhH-HhhccCCCCCcEEEEecCChhH
Q 002187 249 FRIARAIIEALTGSASN--FGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPF-YHCLKDGLHESKILITTRKETV 325 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~v 325 (955)
..++..++.++...... ......+...+.+.+..++.+|||||++.-....+..+ ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 88999999988433221 22345667778888887767999999975432222222 3333322267889999886532
Q ss_pred ----HHhh-cC-cceEeCCCCChhhHHHHhHhhhcC-CCCCCCcchHHHHHHHHHhhcC---CChH-HHHHHHHH--hc-
Q 002187 326 ----ACIM-GS-TNIISINVLSEMGCWLVFEPLAFS-GKSTVERENLEEIGREITRKCK---GLPL-AAKTIACL--LR- 391 (955)
Q Consensus 326 ----~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~--l~- 391 (955)
...+ .. ...+.+++++.++..++|...+.. -......+ +..+.|++.++ |.|. |+..+-.+ ++
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 11 238999999999999999987531 11111222 34556777776 8876 44443332 22
Q ss_pred --CCCCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHHHHHHcCCcccCCCC
Q 002187 392 --SKNTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYLSEKGPK 469 (955)
Q Consensus 392 --~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~W~a~g~i~~~~~~ 469 (955)
..-+.+++..+++... ...+.-++..|+++.+..+..++....+..+. +.....--..| + ..
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----KP 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----CC
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----CC
Confidence 1235677777665421 13456678889988887776666511101111 11111111222 1 11
Q ss_pred cHHHHHHHHHHHHhhccCcccccc
Q 002187 470 EMEDIGEEYFNTLASRSFFQDLER 493 (955)
Q Consensus 470 ~~~~~~~~~~~~L~~~~ll~~~~~ 493 (955)
.......++++.|...+++.....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 224567889999999999987543
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=1.5e-12 Score=143.27 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=173.6
Q ss_pred ceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCcccee
Q 002187 616 KYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKL 693 (955)
Q Consensus 616 r~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~ 693 (955)
+.++.+++. ++++|..+ ..+|++|+|++|. ++.+|.+ +.+|++|++|++++|...+.+|.+ +.++++++.+...
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 678888887 99999877 4789999999998 8999874 789999999999999666666654 5667766654332
Q ss_pred EecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHH
Q 002187 694 VVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERL 773 (955)
Q Consensus 694 ~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 773 (955)
...... . +. ...+..+++|+.|+++.|.+.....
T Consensus 88 ~~N~l~-------~-----------------l~------~~~f~~l~~L~~L~l~~n~l~~~~~---------------- 121 (350)
T 4ay9_X 88 KANNLL-------Y-----------------IN------PEAFQNLPNLQYLLISNTGIKHLPD---------------- 121 (350)
T ss_dssp EETTCC-------E-----------------EC------TTSBCCCTTCCEEEEEEECCSSCCC----------------
T ss_pred cCCccc-------c-----------------cC------chhhhhccccccccccccccccCCc----------------
Confidence 221100 0 00 1235567899999999997654321
Q ss_pred hhhCCCCCCCCeEEEeeec-CCCCCCCCChhccc-ccccEEEEeCCCCCCcCCC-CCCCCCcceeeecCCCCceEeCccc
Q 002187 774 LEALGPPPNLKELRIHEYR-GRRNVVPKNWVMSL-TNLRVLHLRWCSNCEHLPP-LGKLPSLEDLEILGMGSVKRVGNEF 850 (955)
Q Consensus 774 ~~~l~~~~~L~~L~l~~~~-~~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~ 850 (955)
..+....++..|++.++. +.. +++.++..+ ..|+.|+|++| .++.+|. ....++|+.|.+.+++.++.++...
T Consensus 122 -~~~~~~~~l~~l~l~~~~~i~~--l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 122 -VHKIHSLQKVLLDIQDNINIHT--IERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197 (350)
T ss_dssp -CTTCCBSSCEEEEEESCTTCCE--ECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT
T ss_pred -hhhcccchhhhhhhcccccccc--ccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHH
Confidence 122334567778887654 333 435555555 46889999999 6666665 5567789999998888788777654
Q ss_pred cCCccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEec
Q 002187 851 LGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFS 929 (955)
Q Consensus 851 ~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~ 929 (955)
+. .+++|+.|+++++ .++.++. ..+.+|++|.+.+|.+++.+|. +..+++|+.+++.+
T Consensus 198 f~-----------~l~~L~~LdLs~N-~l~~lp~--------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FH-----------GASGPVILDISRT-RIHSLPS--------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TT-----------TEECCSEEECTTS-CCCCCCS--------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hc-----------cCcccchhhcCCC-CcCccCh--------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 43 6789999999997 5665543 3588899999999999999995 78899999999864
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=9.6e-14 Score=162.87 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=106.2
Q ss_pred cCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEe
Q 002187 587 DKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHL 666 (955)
Q Consensus 587 ~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L 666 (955)
..++.|+.|++++|.+..+| .++.|++|++|+|++|. +..+|. ++++++|+.|+|++|. +..+| .+..+++|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 34556777777777776665 46777777777777776 666665 7777777777777776 66655 56677777777
Q ss_pred eCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEE
Q 002187 667 ENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELG 746 (955)
Q Consensus 667 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 746 (955)
++++| .+..+ ..+..+++|+.|++..+.... + ..+..+++|+.|+
T Consensus 115 ~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~-------------------------l--------~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 115 SLEHN-GISDI-NGLVHLPQLESLYLGNNKITD-------------------------I--------TVLSRLTKLDTLS 159 (605)
T ss_dssp ECTTS-CCCCC-GGGGGCTTCSEEECCSSCCCC-------------------------C--------GGGGSCTTCSEEE
T ss_pred EecCC-CCCCC-ccccCCCccCEEECCCCccCC-------------------------c--------hhhcccCCCCEEE
Confidence 77766 33333 234555555555443221110 0 1234556777777
Q ss_pred EEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCC
Q 002187 747 LHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCS 818 (955)
Q Consensus 747 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 818 (955)
|+.|.+.+. . .+..+++|+.|+|++|.+.. + | .+..+++|+.|+|++|.
T Consensus 160 Ls~N~l~~~------------------~-~l~~l~~L~~L~Ls~N~i~~--l-~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 160 LEDNQISDI------------------V-PLAGLTKLQNLYLSKNHISD--L-R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCCC------------------G-GGTTCTTCCEEECCSSCCCB--C-G-GGTTCTTCSEEECCSEE
T ss_pred CcCCcCCCc------------------h-hhccCCCCCEEECcCCCCCC--C-h-HHccCCCCCEEEccCCc
Confidence 777754331 1 15567788888888887766 4 3 46678888888888773
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=1.7e-11 Score=137.16 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=186.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc---c-CCceEEEEeCCcccHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK---K-FEKRMWICVSELFDEFRI 251 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~ 251 (955)
+..++||+.+++.+..++..... ......+.|+|++|+||||+|+.+++...-.. . --..+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36899999999999998854311 12455789999999999999999998432110 0 124678888888888999
Q ss_pred HHHHHHHHcCCCCC-CCChHHHHHHHHHHhc--CceEEEEEeCCCCcccc--ChhhHHhhc---cCC--CCCcEEEEecC
Q 002187 252 ARAIIEALTGSASN-FGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDYC--KWEPFYHCL---KDG--LHESKILITTR 321 (955)
Q Consensus 252 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~--~~~~l~~~l---~~~--~~gs~iivTtr 321 (955)
+..++.+++..... ......+...+.+.+. +++.+||||+++.-... ..+.+...+ ... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999754322 2235566667777763 56899999999753221 112232222 211 34567777777
Q ss_pred ChhHH----Hhh-cC--cceEeCCCCChhhHHHHhHhhhcCC-CCCCCcchHHHHHHHHHhhcC---CChH-HHHHHHHH
Q 002187 322 KETVA----CIM-GS--TNIISINVLSEMGCWLVFEPLAFSG-KSTVERENLEEIGREITRKCK---GLPL-AAKTIACL 389 (955)
Q Consensus 322 ~~~v~----~~~-~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---glPl-ai~~~~~~ 389 (955)
..... ..+ .. ...+.+++++.++..+++...+... ......+ +..+.+++.++ |.|- ++..+..+
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 65221 111 11 1478999999999999998875310 1111222 23556777776 9994 33333322
Q ss_pred hc-----C--CCCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhc-cCCCCcccchHHHHHHHH---
Q 002187 390 LR-----S--KNTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCA-VFPKDYRIWKYKLIELWM--- 458 (955)
Q Consensus 390 l~-----~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~-~fp~~~~i~~~~Li~~W~--- 458 (955)
.. . .-+.+++..++.... ...+.-++..|+.+.+..+..++ ++.....+....+.+...
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 21 1 125666666655421 12355677889998877766555 443223455554444322
Q ss_pred -HcCCcccCCCCcHHHHHHHHHHHHhhccCcccccc--cCCCcEeEEEeC
Q 002187 459 -AQGYLSEKGPKEMEDIGEEYFNTLASRSFFQDLER--ERDGKIYACKMH 505 (955)
Q Consensus 459 -a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~~~~~~~~mH 505 (955)
..|. .......+..++++|...+++..... +..|+.+.++..
T Consensus 323 ~~~~~-----~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~ 367 (387)
T 2v1u_A 323 STLGL-----EHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLD 367 (387)
T ss_dssp HHTTC-----CCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEEC
T ss_pred HhcCC-----CCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEec
Confidence 1221 11224667889999999999987543 234443344443
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.5e-11 Score=137.84 Aligned_cols=321 Identities=15% Similarity=0.058 Sum_probs=194.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC-CceEEEEeCCcccHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF-EKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~ 254 (955)
++.++||+.+++.+..++........+..+.+.|+|.+|+||||+|+.+++. ..... ...+|+.++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999886531101123348999999999999999999984 33321 24678888888888899999
Q ss_pred HHHHHcCCCCC-CCChHHHHHHHHHHhc--CceEEEEEeCCCCccccChhhHHhhccCCC----CCcEEEEecCChhHHH
Q 002187 255 IIEALTGSASN-FGEFQSLMQHIQECVQ--RKKFLLVLDDVWNEDYCKWEPFYHCLKDGL----HESKILITTRKETVAC 327 (955)
Q Consensus 255 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~ 327 (955)
++..++..... ......+...+...+. +++.+||||+++..+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988654322 2244556666666664 568899999997654444445555443211 3667888887654333
Q ss_pred hhc-------CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhc---------CCChHHHHHHHHH-h
Q 002187 328 IMG-------STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKC---------KGLPLAAKTIACL-L 390 (955)
Q Consensus 328 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~glPlai~~~~~~-l 390 (955)
.+. ....+.+++++.++..+++...+....... .--.+..+.|++.+ +|.|..+..+... .
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 123699999999999999988753211000 11134567788888 7887554443322 1
Q ss_pred c-----CC--CCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCC---CCcccchHHHHHHHHH-
Q 002187 391 R-----SK--NTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFP---KDYRIWKYKLIELWMA- 459 (955)
Q Consensus 391 ~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp---~~~~i~~~~Li~~W~a- 459 (955)
. .. -+.+....+.... ....+.-.+..|+.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 1 11 2333333332221 112233446778888888887777654 2225666666665543
Q ss_pred ---cCCcccCCCCcHHHHHHHHHHHHhhccCcccccc----cCCCcEeEEEe----ChHHHHHHHHh
Q 002187 460 ---QGYLSEKGPKEMEDIGEEYFNTLASRSFFQDLER----ERDGKIYACKM----HDIVHDFAQFL 515 (955)
Q Consensus 460 ---~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~----~~~~~~~~~~m----Hdlv~d~a~~~ 515 (955)
.|... . .......++++|...+++..... +..|+.+.++. |+++..+...+
T Consensus 322 ~~~~~~~~----~-~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~ 383 (389)
T 1fnn_A 322 CEEYGERP----R-VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKL 383 (389)
T ss_dssp HHHTTCCC----C-CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHH
T ss_pred HHHcCCCC----C-CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHH
Confidence 22111 1 23557789999999999987543 22333333333 45555554443
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=2.1e-12 Score=134.98 Aligned_cols=172 Identities=23% Similarity=0.316 Sum_probs=114.5
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEee
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLE 667 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~ 667 (955)
...++++++++.+..+|..+. .+|++|+|++|. +..++ ..+.++++|++|+|++|. +..++. .+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 457889999999988888776 689999999988 76665 468889999999999987 665554 478889999999
Q ss_pred CCCCCCCccccc-CCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEE
Q 002187 668 NDQTDSLRYLPV-GIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELG 746 (955)
Q Consensus 668 l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 746 (955)
+++|. +..+|. .++.+++|+. |+
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~-------------------------------------------------------L~ 113 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDK-------------------------------------------------------LY 113 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCE-------------------------------------------------------EE
T ss_pred CCCCc-ccccChhHhcccCCCCE-------------------------------------------------------EE
Confidence 98883 333332 2334444444 44
Q ss_pred EEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC-
Q 002187 747 LHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP- 825 (955)
Q Consensus 747 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~- 825 (955)
|++|.+.... ...+..+++|+.|++++|.+.. +++.++..+++|+.|+|++| .++.++.
T Consensus 114 L~~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 173 (251)
T 3m19_A 114 LGGNQLKSLP-----------------SGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTN-QLQSVPHG 173 (251)
T ss_dssp CCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred cCCCcCCCcC-----------------hhHhccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCC-cCCccCHH
Confidence 4433322111 0123445667777777766665 54556667777777777777 4444443
Q ss_pred -CCCCCCcceeeecCCC
Q 002187 826 -LGKLPSLEDLEILGMG 841 (955)
Q Consensus 826 -l~~l~~L~~L~L~~~~ 841 (955)
+..+++|+.|+|.+++
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 6677777777776655
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=1e-12 Score=140.45 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=94.2
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+++|+.|.+.++...... . +..+++|++|+|++|.+..++. ++++++|++|+|++|. ++.+|. ++++++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~----~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ----G-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT----T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcccCh----h-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCC
Confidence 5778888888887654432 2 7788999999999999988877 8999999999999998 888776 88999999
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCcccee
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKL 693 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 693 (955)
+|++++|. +..++ .+..+++|++|++++| .+..+ ..++.+++|+.|++.
T Consensus 116 ~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 116 SLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp EEECTTSC-CCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECC
T ss_pred EEECCCCc-CCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEcc
Confidence 99999987 77774 6888999999999888 33333 344555555555443
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.8e-12 Score=150.17 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=111.9
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCC
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEND 669 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (955)
.+|++|+|++|.+..+|..+. ++|++|+|++|. ++.+| +.+++|++|++++|. +..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 378889999888888887764 789999999888 88888 457889999998887 777887 655 88899988
Q ss_pred CCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEe
Q 002187 670 QTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHF 749 (955)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 749 (955)
+| .++.+|. .+++|+.|++..+.... + +. .+++|+.|+|++
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~--------l-----------------p~----------~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNNQLTM--------L-----------------PE----------LPTSLEVLSVRN 169 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSSCCSC--------C-----------------CC----------CCTTCCEEECCS
T ss_pred CC-cCCCCCC---cCccccEEeCCCCccCc--------C-----------------CC----------cCCCcCEEECCC
Confidence 88 4555666 46677776654433221 0 00 124566666666
Q ss_pred ecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccc-------cEEEEeCCCCCCc
Q 002187 750 DHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNL-------RVLHLRWCSNCEH 822 (955)
Q Consensus 750 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L-------~~L~L~~~~~~~~ 822 (955)
|.+...+ . +. ++|+.|++++|.+.. + |. +.. +| +.|+|++| .++.
T Consensus 170 N~L~~lp------------------~-l~--~~L~~L~Ls~N~L~~--l-p~-~~~--~L~~~~~~L~~L~Ls~N-~l~~ 221 (571)
T 3cvr_A 170 NQLTFLP------------------E-LP--ESLEALDVSTNLLES--L-PA-VPV--RNHHSEETEIFFRCREN-RITH 221 (571)
T ss_dssp SCCSCCC------------------C-CC--TTCCEEECCSSCCSS--C-CC-CC----------CCEEEECCSS-CCCC
T ss_pred CCCCCcc------------------h-hh--CCCCEEECcCCCCCc--h-hh-HHH--hhhcccccceEEecCCC-ccee
Confidence 6433211 1 21 566666666666654 5 33 322 44 66666666 4445
Q ss_pred CCC-CCCCCCcceeeecCCC
Q 002187 823 LPP-LGKLPSLEDLEILGMG 841 (955)
Q Consensus 823 l~~-l~~l~~L~~L~L~~~~ 841 (955)
+|. +..+++|+.|+|++|+
T Consensus 222 lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSS
T ss_pred cCHHHhcCCCCCEEEeeCCc
Confidence 554 5556666666666554
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=141.49 Aligned_cols=207 Identities=14% Similarity=0.039 Sum_probs=122.3
Q ss_pred CCCcccEEEcCCCCccc--cc--ccccCCCCcceEEeecCCCccccchhh--cCCCCCCEEeeCCCCCccc-cC----cc
Q 002187 588 KLTCLRTLKLDGSVIIE--IP--TNIEKLLHLKYLNLSCQMEIERLPETL--CELYNLERLNVDSCSNLRE-LP----QG 656 (955)
Q Consensus 588 ~l~~Lr~L~L~~~~~~~--lp--~~i~~L~~Lr~L~L~~~~~i~~LP~~i--~~L~~Lq~LdL~~~~~l~~-lp----~~ 656 (955)
....++.|.+.++.+.. +. ..+..+.+|++|++++|......|..+ +++++|++|++++|. +.. .| ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence 33457888888877642 11 112345779999999998334677777 899999999999998 443 33 33
Q ss_pred ccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhc
Q 002187 657 IGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAEL 736 (955)
Q Consensus 657 i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l 736 (955)
+..+++|++|++++|......|..++.+++|++|++..+.... . ..+. ....+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~---~~~~----------------------~~~~~ 193 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG--E---RGLM----------------------AALCP 193 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH--H---HHHH----------------------TTSCT
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc--c---hhhh----------------------HHHhh
Confidence 4678999999999985433444567777777777765443211 0 0000 00112
Q ss_pred cCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh-hCCCCCCCCeEEEeeecCCCCCCCCChhccc---ccccEE
Q 002187 737 EKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLE-ALGPPPNLKELRIHEYRGRRNVVPKNWVMSL---TNLRVL 812 (955)
Q Consensus 737 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l---~~L~~L 812 (955)
..+++|+.|++++|.+... ..... .+..+++|++|++++|.+.. ..|..+..+ ++|++|
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l---------------~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETP---------------TGVCAALAAAGVQPHSLDLSHNSLRA--TVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCH---------------HHHHHHHHHHTCCCSSEECTTSCCCC--CCCSCCSSCCCCTTCCCE
T ss_pred hcCCCCCEEECCCCCCCch---------------HHHHHHHHhcCCCCCEEECCCCCCCc--cchhhHHhccCcCcCCEE
Confidence 3455677777776644211 01111 12345677777777776655 323333333 567777
Q ss_pred EEeCCCCCCcCCCCCCCCCcceeeecCCC
Q 002187 813 HLRWCSNCEHLPPLGKLPSLEDLEILGMG 841 (955)
Q Consensus 813 ~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 841 (955)
+|++| .++.+|..- .++|+.|+|++|.
T Consensus 257 ~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 257 NLSFA-GLEQVPKGL-PAKLRVLDLSSNR 283 (310)
T ss_dssp ECCSS-CCCSCCSCC-CSCCSCEECCSCC
T ss_pred ECCCC-CCCchhhhh-cCCCCEEECCCCc
Confidence 77666 444555411 2566666665554
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2e-12 Score=129.48 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=113.8
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc-ccccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE-IPTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~Lr~ 617 (955)
.+++++.+..+.+..++ .+. .+++|++|.+.++...... .+..+++|++|++++|.+.. .|..++.+++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~l~~n~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIE-YAHNIKDLTINNIHATNYN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGG-GCTTCSEEEEESCCCSCCG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CCccEEeccCCCccChH-HHh-cCCCCCEEEccCCCCCcch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 46788888888877666 444 7888999999888543332 27788899999999988875 5778888999999
Q ss_pred EEeecCCCcc-ccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEec
Q 002187 618 LNLSCQMEIE-RLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVG 696 (955)
Q Consensus 618 L~L~~~~~i~-~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~ 696 (955)
|++++|. ++ ..|..++++++|++|++++|..+..+| .+..+++|++|++++| .+..++ .+..+++|+.|++..+.
T Consensus 117 L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 9999888 65 467778889999999998887577776 6888889999999888 455555 67778888888776554
Q ss_pred C
Q 002187 697 G 697 (955)
Q Consensus 697 ~ 697 (955)
.
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=5.4e-13 Score=140.19 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=112.0
Q ss_pred CCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeC
Q 002187 589 LTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEN 668 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l 668 (955)
+..+..++++++.+..++ .+..+.+|++|++++|. ++.+| .++.+++|++|++++|. +..+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 444666777778777776 57788888888888887 87787 57888888888888887 777776 778888888888
Q ss_pred CCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEE
Q 002187 669 DQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLH 748 (955)
Q Consensus 669 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 748 (955)
++| .+..+|.... .+|+.|+++
T Consensus 93 ~~N-~l~~l~~~~~---------------------------------------------------------~~L~~L~L~ 114 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS---------------------------------------------------------ACLSRLFLD 114 (263)
T ss_dssp CSS-CCSCCTTCCC---------------------------------------------------------SSCCEEECC
T ss_pred CCC-ccCCcCcccc---------------------------------------------------------CcccEEEcc
Confidence 777 2332221110 234444444
Q ss_pred eecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCC
Q 002187 749 FDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGK 828 (955)
Q Consensus 749 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 828 (955)
+|.+.. ++.+..+++|+.|++++|.+.. + + .+..+++|+.|+|++| .++.++.+..
T Consensus 115 ~N~l~~-------------------~~~l~~l~~L~~L~Ls~N~i~~--~-~-~l~~l~~L~~L~L~~N-~i~~~~~l~~ 170 (263)
T 1xeu_A 115 NNELRD-------------------TDSLIHLKNLEILSIRNNKLKS--I-V-MLGFLSKLEVLDLHGN-EITNTGGLTR 170 (263)
T ss_dssp SSCCSB-------------------SGGGTTCTTCCEEECTTSCCCB--C-G-GGGGCTTCCEEECTTS-CCCBCTTSTT
T ss_pred CCccCC-------------------ChhhcCcccccEEECCCCcCCC--C-h-HHccCCCCCEEECCCC-cCcchHHhcc
Confidence 443221 1234456677777777777665 4 3 5667788888888887 5555566777
Q ss_pred CCCcceeeecCCC
Q 002187 829 LPSLEDLEILGMG 841 (955)
Q Consensus 829 l~~L~~L~L~~~~ 841 (955)
+++|+.|++.+++
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 8888888887655
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=1.3e-12 Score=153.16 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=132.7
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+++|+.|.+.++....+. .+..+++|+.|+|++|.+..+|. ++.|++|++|+|++|. +..+| .++.+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCCCh-----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCC
Confidence 6788888888887654432 27889999999999999988876 8999999999999998 88877 589999999
Q ss_pred EEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEe
Q 002187 641 RLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIR 720 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~ 720 (955)
+|+|++|. +..+| .+..|++|+.|++++| .+..+ ..++.+++|+.|++..+.... +
T Consensus 113 ~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~--------~------------ 168 (605)
T 1m9s_A 113 SLSLEHNG-ISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISD--------I------------ 168 (605)
T ss_dssp EEECTTSC-CCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCCCC--------C------------
T ss_pred EEEecCCC-CCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcCCC--------c------------
Confidence 99999998 77765 5889999999999988 45555 567788888888765433221 0
Q ss_pred CCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCC
Q 002187 721 GLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRR 795 (955)
Q Consensus 721 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 795 (955)
..+..+++|+.|+|+.|.+.+ ++.+..+++|+.|+|++|.+..
T Consensus 169 -------------~~l~~l~~L~~L~Ls~N~i~~-------------------l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 -------------VPLAGLTKLQNLYLSKNHISD-------------------LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -------------GGGTTCTTCCEEECCSSCCCB-------------------CGGGTTCTTCSEEECCSEEEEC
T ss_pred -------------hhhccCCCCCEEECcCCCCCC-------------------ChHHccCCCCCEEEccCCcCcC
Confidence 013456788888888886533 1356778999999999998876
No 112
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=4.9e-11 Score=133.36 Aligned_cols=295 Identities=14% Similarity=0.084 Sum_probs=175.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC---CceEEEEeCCcccHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---EKRMWICVSELFDEFRIA 252 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~ 252 (955)
+..++||+++++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46899999999999998864211 124558899999999999999999984 43433 246788877777777888
Q ss_pred HHHHHHHcCCCCC-CCChHHHHHHHHHHhc--CceEEEEEeCCCCcc----ccChhhHHhhccC-CCCCcEEEEecCChh
Q 002187 253 RAIIEALTGSASN-FGEFQSLMQHIQECVQ--RKKFLLVLDDVWNED----YCKWEPFYHCLKD-GLHESKILITTRKET 324 (955)
Q Consensus 253 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 324 (955)
..++.+++..... ..+..+....+.+.+. +++.+||||+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8887777543221 2234555666666664 458999999996532 2223334333322 223556788887654
Q ss_pred HHHhhc-----C--cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcC---CChHHHHH-HHHHhc--
Q 002187 325 VACIMG-----S--TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCK---GLPLAAKT-IACLLR-- 391 (955)
Q Consensus 325 v~~~~~-----~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~---glPlai~~-~~~~l~-- 391 (955)
....+. . ...+.+++++.++..+++...+...... ..--.++.+.+++.++ |.|..+.. +.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP--GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS--SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 322211 1 1479999999999999998764211100 1112344566777776 99884433 332211
Q ss_pred ---C--CCCHHHHHHHHhhhchhhhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCC-C-cccchHHHHHHH--HH--c
Q 002187 392 ---S--KNTEKEWQNILESEIWEIEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPK-D-YRIWKYKLIELW--MA--Q 460 (955)
Q Consensus 392 ---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~-~-~~i~~~~Li~~W--~a--~ 460 (955)
. .-+.+.+..++.... ...+.-++..+|.+.+..+..++...+ + ..+....+.+.. ++ .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 124555555544321 224556677888887776666653211 1 123343333222 11 1
Q ss_pred CCcccCCCCcHHHHHHHHHHHHhhccCcccc
Q 002187 461 GYLSEKGPKEMEDIGEEYFNTLASRSFFQDL 491 (955)
Q Consensus 461 g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 491 (955)
|. . .........|++.|...+++...
T Consensus 323 g~-~----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GV-E----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TC-C----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CC-C----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 21 1 11234567899999999999764
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=1.7e-13 Score=151.84 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=63.5
Q ss_pred hhhhccCCCceEEEecCCCchhhH-HHHHHHhcCCC-cccEEEcCCCCcccc-cccccCC-----CCcceEEeecCCCcc
Q 002187 556 ISIWDNVKGLRSLLVKSDEYSWSI-EVLRQLFDKLT-CLRTLKLDGSVIIEI-PTNIEKL-----LHLKYLNLSCQMEIE 627 (955)
Q Consensus 556 ~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~~~l~-~Lr~L~L~~~~~~~l-p~~i~~L-----~~Lr~L~L~~~~~i~ 627 (955)
..+....++|++|++.++...... ..+...|..++ +|++|+|++|.+... +..+..+ .+|++|+|++|. ++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 333423444777777766543221 11224466666 677777777776553 3444443 677777777776 55
Q ss_pred ccc-hh----hcCC-CCCCEEeeCCCCCccccCcc-----ccC-CCCCcEeeCCCC
Q 002187 628 RLP-ET----LCEL-YNLERLNVDSCSNLRELPQG-----IGK-LRKLMHLENDQT 671 (955)
Q Consensus 628 ~LP-~~----i~~L-~~Lq~LdL~~~~~l~~lp~~-----i~~-L~~L~~L~l~~~ 671 (955)
..+ .. +..+ ++|++|++++|. +...+.. +.. .++|++|++++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 433 22 3344 677777777776 5544321 223 246777777766
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=3.4e-12 Score=133.33 Aligned_cols=150 Identities=22% Similarity=0.291 Sum_probs=71.4
Q ss_pred ceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceE
Q 002187 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYL 618 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L 618 (955)
.++.+.+..+.+..++...+..+++|++|++.++..... .+..|..+++|++|+|++|.+..+| ..++.+++|++|
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL---SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC---CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc---CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 445555555554444433333555555555555443221 1222445555555555555555443 234555555555
Q ss_pred EeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEe
Q 002187 619 NLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVV 695 (955)
Q Consensus 619 ~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~ 695 (955)
+|++|. ++.+|.. +.++++|++|+|++|. +..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++..+
T Consensus 113 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 555554 5444433 3455555555555554 444443 3445555555555555 2233332 3444555555544433
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=9.8e-13 Score=145.62 Aligned_cols=242 Identities=14% Similarity=0.082 Sum_probs=131.5
Q ss_pred HHHHhcCCCcccEEEcCCCCccccc-----ccccCCC-CcceEEeecCCCcccc-chhhcCC-----CCCCEEeeCCCCC
Q 002187 582 LRQLFDKLTCLRTLKLDGSVIIEIP-----TNIEKLL-HLKYLNLSCQMEIERL-PETLCEL-----YNLERLNVDSCSN 649 (955)
Q Consensus 582 l~~~~~~l~~Lr~L~L~~~~~~~lp-----~~i~~L~-~Lr~L~L~~~~~i~~L-P~~i~~L-----~~Lq~LdL~~~~~ 649 (955)
.+.++...++|++|+|++|.+...+ ..+.+++ +|++|+|++|. ++.. +..+..+ ++|++|+|++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 3444555555777777777766654 4566666 67777777776 5543 3444443 777777777776
Q ss_pred ccccCcc-----ccCC-CCCcEeeCCCCCCCccccc-C----CCC-CCCCCccceeEecCccCCccCc-cccccCC-CCC
Q 002187 650 LRELPQG-----IGKL-RKLMHLENDQTDSLRYLPV-G----IGE-LISLRRVSKLVVGGGYDKACSL-GSLKKLN-LLR 715 (955)
Q Consensus 650 l~~lp~~-----i~~L-~~L~~L~l~~~~~l~~~p~-~----i~~-l~~L~~L~~~~~~~~~~~~~~l-~~L~~L~-~L~ 715 (955)
+...+.. +..+ ++|++|++++|. +...+. . +.. .++|++|++..+.........+ ..+..+. .|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 5443322 3344 677777777773 333222 1 223 2467777666554432111111 1123333 555
Q ss_pred CceEeCCCCCCCHhhhHHhhccCC-CCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCC-CCCCCeEEEeeecC
Q 002187 716 QCRIRGLGDFSDVGEARRAELEKK-KNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGP-PPNLKELRIHEYRG 793 (955)
Q Consensus 716 ~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~ 793 (955)
.|.+.+..-...........+... ++|+.|+|++|.+.+.. ...+...+.. +++|+.|++++|.+
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------------~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------------YAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------------HHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------------HHHHHHHHhcCCCCceEEECcCCCC
Confidence 555554321111112222334444 47888888877543221 1223334433 35788888888876
Q ss_pred CCCCCCC----ChhcccccccEEEEeCCCC--CC-----cC-CCCCCCCCcceeeecCCC
Q 002187 794 RRNVVPK----NWVMSLTNLRVLHLRWCSN--CE-----HL-PPLGKLPSLEDLEILGMG 841 (955)
Q Consensus 794 ~~~~~~p----~~~~~l~~L~~L~L~~~~~--~~-----~l-~~l~~l~~L~~L~L~~~~ 841 (955)
.. .++ .++..+++|+.|+|++|.. .. .+ ..+..+++|+.|+++++.
T Consensus 238 ~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 238 HG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred Cc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 55 312 2234677888888888841 11 11 236678888888887765
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=4.8e-12 Score=126.74 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=91.3
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccc-cchhhcCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIER-LPETLCELYNL 639 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-LP~~i~~L~~L 639 (955)
.+++|++|.+.++....+ + .+..+++|++|++++|.+..++ .+..+++|++|++++|. ++. .|..++++++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l----~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL----T-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCSCC----T-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCCccCh----H-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCC
Confidence 667788888887764432 2 2677888888888888766554 67788888888888887 554 67778888888
Q ss_pred CEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEe
Q 002187 640 ERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 640 q~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 695 (955)
++|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|++..+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 888888887333466677888888888888875466665 5677777777765443
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=6.9e-12 Score=126.88 Aligned_cols=127 Identities=24% Similarity=0.388 Sum_probs=62.5
Q ss_pred ceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcceE
Q 002187 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKYL 618 (955)
Q Consensus 540 ~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~L 618 (955)
+++++.+..+.+..++...+..+++|++|.+.++....+ .+..|..+++|++|+|++|.+..+|.. ++++++|++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL---PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc---ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 455555555555444444333555555555555442211 122244555555555555555554432 3555555555
Q ss_pred EeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCC
Q 002187 619 NLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQT 671 (955)
Q Consensus 619 ~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 671 (955)
+|++|. ++.+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 555555 4444432 4555555555555554 4444433 444555555555554
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=7e-12 Score=151.01 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=100.5
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCc-hhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEY-SWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~ 617 (955)
..++++.+..+.....+.... ...+|+.+.+..... .......+..|..++.|++|+|++|.+..+|..+.++.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 467788887776665555544 455555555443221 011123466689999999999999999999999999999999
Q ss_pred EEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecC
Q 002187 618 LNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 618 L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 697 (955)
|+|++|. ++.+|..+++|++|++|+|++|. +..+|..+..|++|++|++++| .+..+|..++.|++|+.|++..+..
T Consensus 252 L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 9999998 88999999999999999999998 8899999999999999999998 6778999999999999999877665
Q ss_pred c
Q 002187 698 G 698 (955)
Q Consensus 698 ~ 698 (955)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=6.8e-12 Score=128.85 Aligned_cols=145 Identities=28% Similarity=0.370 Sum_probs=112.6
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~L~L~~ 622 (955)
+....+.+..+|..+ .++|+.|.+.++....+ .+..|..+++|++|+|++|.+..+|.. ++.+++|++|+|++
T Consensus 24 v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI---PTNAQILYLHDNQITKL---EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eEccCCCcCccCCCC---CCCCCEEEcCCCccCcc---CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 444445555566544 37889999988875433 234478899999999999999888754 68899999999999
Q ss_pred CCCccccchh-hcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEecC
Q 002187 623 QMEIERLPET-LCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVVGG 697 (955)
Q Consensus 623 ~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 697 (955)
|. ++.+|.. +..+++|++|+|++|. +..+|..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 98 N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 98 NQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred Cc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 98 8888754 6889999999999988 8899999999999999999988 5566664 477788888887765543
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=125.83 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=112.8
Q ss_pred EEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcceEEee
Q 002187 543 HLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLS 621 (955)
Q Consensus 543 ~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~ 621 (955)
.+.+..+.+..+|..+. +.++.|.+.++....... ...|..+++|++|+|++|.+..++. .++++.+|++|+|+
T Consensus 15 ~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLEA--TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEECC--CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccCc--hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 56666666666666543 456788888887543311 1236788999999999999888765 78999999999999
Q ss_pred cCCCccccch-hhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCc
Q 002187 622 CQMEIERLPE-TLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 622 ~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
+|. ++.+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|+.|++..+...
T Consensus 90 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 998 777765 48889999999999988 6655 677888999999999988443334677888889988887665543
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=9.5e-12 Score=126.80 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=107.1
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~ 622 (955)
+....+.+..+|..+. ++|+.|.+.++....+ .+..|..+++|++|+|++|.+..+ |..+.++++|++|+|++
T Consensus 16 v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i---~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVI---PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EECTTSCCSSCCSSCC---TTCCEEECCSSCCCEE---CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEcCCCCcCcCCCccC---cCCCEEECCCCcCCCc---CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 3444445555555433 6788888888764332 223477888999999999988876 67888999999999998
Q ss_pred CCCccccchh-hcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEecC
Q 002187 623 QMEIERLPET-LCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVVGG 697 (955)
Q Consensus 623 ~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 697 (955)
|. ++.+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++| .++.+|. .+..+++|+.|++..+..
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88 8888865 5788999999999988 6655 556788899999999888 4555554 477788888887765543
No 122
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.23 E-value=1.1e-10 Score=121.31 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=119.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++||+..++.+..++.... ...++.|+|.+|+||||+|+.+++... ..+... ...+...... ..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~-~~~~~~~~~~----~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGIT-ATPCGVCDNC----REIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSC-SSCCSCSHHH----HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCC-CCCCcccHHH----HHHh
Confidence 469999999999999996432 234789999999999999999988432 211100 0000000000 0000
Q ss_pred HHH-----cCCCCCCCChHHHHHHHHHH-----hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-H
Q 002187 257 EAL-----TGSASNFGEFQSLMQHIQEC-----VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-V 325 (955)
Q Consensus 257 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 325 (955)
... ..........+.+. .+.+. ..+++.+||+||++.-+...+..+...+.....+..+|+||+... +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000001111111 11111 135679999999976555567777777766666788898887643 2
Q ss_pred HH-hhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHh
Q 002187 326 AC-IMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLL 390 (955)
Q Consensus 326 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l 390 (955)
.. .......+.+++++.++..+++...+...+... -.+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 122346899999999999999988775332211 13457789999999999988776543
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=1.6e-11 Score=142.41 Aligned_cols=164 Identities=22% Similarity=0.238 Sum_probs=90.2
Q ss_pred CcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCC
Q 002187 590 TCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLEND 669 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~ 669 (955)
++|++|+|++|.+..+| +.+++|++|+|++|. ++.+|. +++ +|++|++++|. +..+|. .+++|++|+++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCC
Confidence 45666666666666665 345666666666665 655665 444 66666666665 555655 45666666666
Q ss_pred CCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEe
Q 002187 670 QTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHF 749 (955)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 749 (955)
+| .++.+|. .+++|+.|++..+.... + +. +. ++|+.|+|+.
T Consensus 149 ~N-~l~~lp~---~l~~L~~L~Ls~N~L~~--------l-----------------p~--------l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 149 NN-QLTMLPE---LPTSLEVLSVRNNQLTF--------L-----------------PE--------LP--ESLEALDVST 189 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSSCCSC--------C-----------------CC--------CC--TTCCEEECCS
T ss_pred CC-ccCcCCC---cCCCcCEEECCCCCCCC--------c-----------------ch--------hh--CCCCEEECcC
Confidence 66 3444554 34455555443322111 0 00 00 3556666666
Q ss_pred ecCCCCCcccccCCCCchhhHHHHh-hhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCC
Q 002187 750 DHIRDGDEEQAGRRENEEDEDERLL-EALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCE 821 (955)
Q Consensus 750 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~ 821 (955)
|.+...+. +. .....++.|+.|++++|.+.. + |.++..+++|+.|+|++|....
T Consensus 190 N~L~~lp~---------------~~~~L~~~~~~L~~L~Ls~N~l~~--l-p~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 190 NLLESLPA---------------VPVRNHHSEETEIFFRCRENRITH--I-PENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCSSCCC---------------CC--------CCEEEECCSSCCCC--C-CGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCchhh---------------HHHhhhcccccceEEecCCCccee--c-CHHHhcCCCCCEEEeeCCcCCC
Confidence 54432110 00 001122345888888888776 7 6677778888888888884433
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=5.4e-11 Score=121.17 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=59.0
Q ss_pred cEEEcCCCCcccccccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCC
Q 002187 593 RTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQ 670 (955)
Q Consensus 593 r~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~ 670 (955)
+.++++++.+..+|..+. .+|++|+|++|. ++.+|. .+..+++|++|+|++|. +..+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC
Confidence 567788888888877665 678888888887 777664 57778888888888877 5554 66677788888888877
Q ss_pred CCCCcccc
Q 002187 671 TDSLRYLP 678 (955)
Q Consensus 671 ~~~l~~~p 678 (955)
| .++.+|
T Consensus 90 N-~l~~l~ 96 (220)
T 2v9t_B 90 N-KITELP 96 (220)
T ss_dssp S-CCCCCC
T ss_pred C-cCCccC
Confidence 7 333443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.2e-11 Score=120.32 Aligned_cols=130 Identities=23% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccc-cchhhcCCCCCC
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIER-LPETLCELYNLE 640 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-LP~~i~~L~~Lq 640 (955)
.++|++|.+.++.... ..++..+..+++|++|++++|.+..+ ..++.+++|++|+|++|. +.. +|..++++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence 3566666666665320 00122256667777777777776666 667777777777777776 555 666666677777
Q ss_pred EEeeCCCCCccccC--ccccCCCCCcEeeCCCCCCCccccc----CCCCCCCCCccceeEecC
Q 002187 641 RLNVDSCSNLRELP--QGIGKLRKLMHLENDQTDSLRYLPV----GIGELISLRRVSKLVVGG 697 (955)
Q Consensus 641 ~LdL~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~~ 697 (955)
+|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77777775 66655 55667777777777776 4445554 566677777776665543
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=5.3e-11 Score=124.92 Aligned_cols=146 Identities=18% Similarity=0.122 Sum_probs=117.1
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceE
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYL 618 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L 618 (955)
..++.+.+..+.+..++ .+. .+++|++|.+.++....... +..+++|++|+|++|.+..+|.... .+|++|
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQ-FFTNLKELHLSHNQISDLSP-----LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGG-GCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred CcCcEEECcCCCcccch-HHh-hCCCCCEEECCCCccCCChh-----hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 47788888888777665 444 78999999999887544322 7889999999999999988876444 899999
Q ss_pred EeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCc
Q 002187 619 NLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 619 ~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
+|++|. ++.+|. ++++++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..+..+++|+.|++..+...
T Consensus 112 ~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCccc
Confidence 999998 888874 8899999999999988 88886 6888999999999988 44555 66788899999988877654
Q ss_pred c
Q 002187 699 Y 699 (955)
Q Consensus 699 ~ 699 (955)
.
T Consensus 186 ~ 186 (263)
T 1xeu_A 186 N 186 (263)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.2e-11 Score=120.37 Aligned_cols=133 Identities=23% Similarity=0.204 Sum_probs=113.8
Q ss_pred CceEEEEEEccCCC--CcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc-ccccccCCCCc
Q 002187 539 KKVFHLMLTLHRGA--SVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE-IPTNIEKLLHL 615 (955)
Q Consensus 539 ~~~r~l~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~L 615 (955)
.+++++.+..+.+. .++..+. .+++|+.|.+.++..... ..+..+++|++|+|++|.+.. +|..++++++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 57889999998877 5666655 899999999999976544 338899999999999999988 77778889999
Q ss_pred ceEEeecCCCccccc--hhhcCCCCCCEEeeCCCCCccccCc----cccCCCCCcEeeCCCCCCCcccccC
Q 002187 616 KYLNLSCQMEIERLP--ETLCELYNLERLNVDSCSNLRELPQ----GIGKLRKLMHLENDQTDSLRYLPVG 680 (955)
Q Consensus 616 r~L~L~~~~~i~~LP--~~i~~L~~Lq~LdL~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~~ 680 (955)
++|+|++|. ++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|++++| ....+|..
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 999999998 99887 689999999999999998 888887 7889999999999988 45555543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.6e-11 Score=120.36 Aligned_cols=128 Identities=21% Similarity=0.145 Sum_probs=98.1
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhh-cCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETL-CELYNL 639 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i-~~L~~L 639 (955)
.+.+|+.|.+.++....+ +......++|++|++++|.+..+ ..++.+++|++|+|++|. ++.+|..+ +.+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 677888888888765432 22123334889999999888877 678888899999999888 88888655 888899
Q ss_pred CEEeeCCCCCccccCc--cccCCCCCcEeeCCCCCCCcccccC----CCCCCCCCccceeEec
Q 002187 640 ERLNVDSCSNLRELPQ--GIGKLRKLMHLENDQTDSLRYLPVG----IGELISLRRVSKLVVG 696 (955)
Q Consensus 640 q~LdL~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~~ 696 (955)
++|++++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+.
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999887 788886 7888889999999888 45566664 7778888888776654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.1e-11 Score=117.85 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=75.7
Q ss_pred CCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccc-cchhhcCCCCCC
Q 002187 562 VKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIER-LPETLCELYNLE 640 (955)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-LP~~i~~L~~Lq 640 (955)
.++|+.|.+.++.... ..++..+..+++|++|++++|.+..+ ..++++++|++|+|++|. ++. +|..++++++|+
T Consensus 16 ~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence 3556666666654320 00122356666777777777766666 556667777777777776 555 666666677777
Q ss_pred EEeeCCCCCccccC--ccccCCCCCcEeeCCCCCCCccccc----CCCCCCCCCccce
Q 002187 641 RLNVDSCSNLRELP--QGIGKLRKLMHLENDQTDSLRYLPV----GIGELISLRRVSK 692 (955)
Q Consensus 641 ~LdL~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~ 692 (955)
+|++++|. +..+| ..+..+++|++|++++| .+...|. .++.+++|+.|++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 77777766 55544 55666777777777666 3444443 3556666666554
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=3.8e-11 Score=123.22 Aligned_cols=129 Identities=24% Similarity=0.386 Sum_probs=112.3
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~ 617 (955)
..++.+.+..+.+..++...+..+++|+.|.+.++....+ .+..|..+++|++|+|++|.+..+|.. ++.+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i---~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL---PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc---ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 6889999999998877666555899999999999875332 234478999999999999999998755 689999999
Q ss_pred EEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCC
Q 002187 618 LNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTD 672 (955)
Q Consensus 618 L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 672 (955)
|+|++|. ++.+|..+.++++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999 99999999999999999999998 888875 47889999999999984
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=7.1e-11 Score=119.35 Aligned_cols=142 Identities=30% Similarity=0.409 Sum_probs=107.4
Q ss_pred EEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcceEEeecC
Q 002187 545 MLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKYLNLSCQ 623 (955)
Q Consensus 545 ~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~L~L~~~ 623 (955)
....+....+|... .++|++|++.++....+ .+..|..+++|++|++++|.+..+|.. +..+++|++|+|++|
T Consensus 13 ~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI---PAQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp ECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EecCCCccCCCCCC---CCCCcEEEcCCCccCcC---ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 33444444455443 46899999998875432 234478899999999999999888754 688999999999999
Q ss_pred CCccccchh-hcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEe
Q 002187 624 MEIERLPET-LCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVV 695 (955)
Q Consensus 624 ~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~ 695 (955)
. ++.+|.. ++++++|++|++++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++..+
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred c-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 8 8887764 6899999999999987 7777765 688999999999988 45556554 677888888776544
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=2.7e-11 Score=115.12 Aligned_cols=123 Identities=25% Similarity=0.233 Sum_probs=106.6
Q ss_pred CceEEEEEEccCCC--CcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccc-ccccccCCCCc
Q 002187 539 KKVFHLMLTLHRGA--SVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIE-IPTNIEKLLHL 615 (955)
Q Consensus 539 ~~~r~l~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~L~~L 615 (955)
.+++++.+..+.+. .++..+. .+++|+.|.+.++..... ..+..+++|++|++++|.+.. +|..++.+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 57888999988877 5666555 899999999999876544 348899999999999999988 78888889999
Q ss_pred ceEEeecCCCccccc--hhhcCCCCCCEEeeCCCCCccccCc----cccCCCCCcEeeCC
Q 002187 616 KYLNLSCQMEIERLP--ETLCELYNLERLNVDSCSNLRELPQ----GIGKLRKLMHLEND 669 (955)
Q Consensus 616 r~L~L~~~~~i~~LP--~~i~~L~~Lq~LdL~~~~~l~~lp~----~i~~L~~L~~L~l~ 669 (955)
++|++++|. ++.+| ..++.+++|++|++++|. +..+|. .+..+++|++|+++
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999999 88876 789999999999999998 888876 68899999999875
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=8.4e-11 Score=129.84 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=49.0
Q ss_pred cccEEEcCCCCccccccc-cc-CCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEe
Q 002187 591 CLRTLKLDGSVIIEIPTN-IE-KLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHL 666 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~-i~-~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L 666 (955)
.+++|+|++|.+..++.. +. ++.+|++|+|++|. ++.+| ..+.++++|++|+|++|. +..+|. .+..+++|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 355555555555554432 33 55555555555555 55444 235555555555555555 444443 24555555555
Q ss_pred eCCCCCCCcccccCCCCCCCCCccce
Q 002187 667 ENDQTDSLRYLPVGIGELISLRRVSK 692 (955)
Q Consensus 667 ~l~~~~~l~~~p~~i~~l~~L~~L~~ 692 (955)
++++|......|..+..+++|+.|++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ECCCCcccEECHHHhCCcccCCEEEC
Confidence 55555222222333444444444433
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=9.3e-10 Score=112.46 Aligned_cols=185 Identities=10% Similarity=0.023 Sum_probs=117.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 255 (955)
..++||+..++.+.+++... ....+.|+|.+|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999999643 222389999999999999999988421 11222 23344444433332222211
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHH-hhcCcc
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VAC-IMGSTN 333 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~ 333 (955)
..+..... .-.+++.+||+||++.......+.+...+.....+.++|+||+... +.. ......
T Consensus 90 -~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 0125788999999976544455666666665566788898887643 111 122234
Q ss_pred eEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 334 IISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 334 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
.+.+.+++.++..+++.+.+...+... -.+..+.|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999988764322111 13456778899999998655443
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=8.5e-11 Score=119.73 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=109.3
Q ss_pred CceEEEEEEccCCCCcc-hhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcc
Q 002187 539 KKVFHLMLTLHRGASVP-ISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLK 616 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr 616 (955)
..++.+.+..+.+..++ ...+..+++|++|.+.++....+ .+..|.++++|++|+|++|.+..++. .++++++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI---EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE---CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE---CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 46788999999887763 34455899999999999875433 23358999999999999999988865 589999999
Q ss_pred eEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCC
Q 002187 617 YLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTD 672 (955)
Q Consensus 617 ~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 672 (955)
+|+|++|. ++.+ |..+.++++|++|+|++|. +..+ |..+..+++|++|++++|.
T Consensus 109 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 109 TLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999 7776 6789999999999999998 6666 7789999999999999984
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=5.4e-10 Score=121.72 Aligned_cols=287 Identities=11% Similarity=0.133 Sum_probs=152.6
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcC-CCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccc-hhhcC---
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDK-LTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLP-ETLCE--- 635 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~-l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~--- 635 (955)
.+.+++.|.+.+.-.... +.. +.. +++|++|||++|.+......-+.++.++++.+..+ .+| ..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~---~~~-l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAED---FRH-LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEEECHHH---HHH-HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hhCceeEEEEeccccHHH---HHH-HHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccc
Confidence 356788888876532111 222 333 89999999999998732222233444667776655 344 34667
Q ss_pred -----CCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEecCccCCccCcccc
Q 002187 636 -----LYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVVGGGYDKACSLGSL 708 (955)
Q Consensus 636 -----L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~l~~L 708 (955)
+.+|+.|+|.. . +..++.. +..|++|+.|++..|. +..++. .+..+.++..+...... ..
T Consensus 95 ~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~----------~~ 161 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSD----------AY 161 (329)
T ss_dssp TEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTH----------HH
T ss_pred ccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchh----------hh
Confidence 99999999988 4 7777654 7889999999998874 334443 34444433333221100 00
Q ss_pred ccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCC-cEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEE
Q 002187 709 KKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLI-ELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELR 787 (955)
Q Consensus 709 ~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 787 (955)
..+..+... .+..+.+|+ .+.+... . .........-..+.++..+.
T Consensus 162 ~~~~~i~~~-----------------~f~~~~~L~~~i~~~~~----~------------~l~~~~~~~~~~~~~~~~l~ 208 (329)
T 3sb4_A 162 RFKNRWEHF-----------------AFIEGEPLETTIQVGAM----G------------KLEDEIMKAGLQPRDINFLT 208 (329)
T ss_dssp HTSTTTTTS-----------------CEEESCCCEEEEEECTT----C------------CHHHHHHHTTCCGGGCSEEE
T ss_pred hcccccccc-----------------ccccccccceeEEecCC----C------------cHHHHHhhcccCccccceEE
Confidence 000001000 111122222 1111100 0 00111111222334555666
Q ss_pred EeeecCCCCCCCCChh-cccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccC
Q 002187 788 IHEYRGRRNVVPKNWV-MSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIA 864 (955)
Q Consensus 788 l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~ 864 (955)
+.+..... . ...+ ..+++|+.|+|.+| .++.+|. +..+++|+.|.|.+. ++.++...+. +
T Consensus 209 ~~~~l~~~--~-~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-----------~ 271 (329)
T 3sb4_A 209 IEGKLDNA--D-FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-----------N 271 (329)
T ss_dssp EEECCCHH--H-HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------T
T ss_pred EeeeecHH--H-HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------C
Confidence 65542211 0 1111 13667777777766 4555554 666777777777553 6666655433 5
Q ss_pred CCccc-eeeecccccccccccccccccccccCcccceeeeccCcCCCCCCC-CCCCCCCcCeEE
Q 002187 865 FPKLK-ELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPD-HLLQKTTLQRLS 926 (955)
Q Consensus 865 fp~L~-~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~l~~L~~L~ 926 (955)
+++|+ .+.+.+ +++.+.. ..+..|++|+.|++.++. ++.++. .+.++++|+.|.
T Consensus 272 ~~~L~~~l~l~~--~l~~I~~-----~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 272 CGRLAGTLELPA--SVTAIEF-----GAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTCCEEEEECT--TCCEECT-----TTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred ChhccEEEEEcc--cceEEch-----hhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 66777 777765 3443322 256677888888876664 666664 566777777765
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=1.8e-10 Score=134.32 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=70.3
Q ss_pred ceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEee
Q 002187 565 LRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNV 644 (955)
Q Consensus 565 Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL 644 (955)
|++|.+.++....+ |. |..+++|++|+|++|.+..+|..++++++|++|+|++|. ++.+| .++++++|++|+|
T Consensus 443 L~~L~Ls~n~l~~l----p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVL----CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSC----CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCC----cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEEC
Confidence 55566665543322 22 566677777777777777777777777777777777776 66676 5777777777777
Q ss_pred CCCCCcccc--CccccCCCCCcEeeCCCCCCCcccccC
Q 002187 645 DSCSNLREL--PQGIGKLRKLMHLENDQTDSLRYLPVG 680 (955)
Q Consensus 645 ~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~ 680 (955)
++|. +..+ |..+..|++|++|++++| .+...|+.
T Consensus 516 s~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~ 551 (567)
T 1dce_A 516 CNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGI 551 (567)
T ss_dssp CSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSC
T ss_pred CCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccH
Confidence 7766 5555 666777777777777766 34444443
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=6.8e-11 Score=130.59 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=54.3
Q ss_pred CCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCcccc-CccccCCCCCc
Q 002187 588 KLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLREL-PQGIGKLRKLM 664 (955)
Q Consensus 588 ~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~ 664 (955)
.+++|++|+|++|.+..++ ..+.++++|++|+|++|. ++.+|. .+.++.+|++|+|++|. +..+ |..+..+++|+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCC
Confidence 5555555555555555544 235555555555555555 554443 34555555555555555 3333 34455555555
Q ss_pred EeeCCCCCCCcccccCC----CCCCCCCccceeEec
Q 002187 665 HLENDQTDSLRYLPVGI----GELISLRRVSKLVVG 696 (955)
Q Consensus 665 ~L~l~~~~~l~~~p~~i----~~l~~L~~L~~~~~~ 696 (955)
+|++++| .+..+|..+ ..+++|+.|++..+.
T Consensus 140 ~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 140 KLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred EEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 5555555 344444432 345555555554443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=1.2e-10 Score=114.01 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=108.5
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccc-cCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNI-EKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i-~~L~~Lr~ 617 (955)
.+++.+.+.++.+..++. +....++|+.|++.++....+ ..|..+++|++|+|++|.+..+|..+ +.+++|++
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 578999999998886643 442445999999999986554 23889999999999999999998665 99999999
Q ss_pred EEeecCCCccccch--hhcCCCCCCEEeeCCCCCccccCcc----ccCCCCCcEeeCCCCC
Q 002187 618 LNLSCQMEIERLPE--TLCELYNLERLNVDSCSNLRELPQG----IGKLRKLMHLENDQTD 672 (955)
Q Consensus 618 L~L~~~~~i~~LP~--~i~~L~~Lq~LdL~~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 672 (955)
|+|++|. ++.+|. .++.+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 93 L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999 999997 89999999999999998 8888885 8899999999998873
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=2.7e-11 Score=145.97 Aligned_cols=120 Identities=20% Similarity=0.200 Sum_probs=99.0
Q ss_pred hhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcC
Q 002187 556 ISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCE 635 (955)
Q Consensus 556 ~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~ 635 (955)
...+..+++|+.|++.++....+ +..+.++++|++|+|++|.+..+|..|++|.+|++|+|++|. ++.+|..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l----~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNI----SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCC----CGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhhccCCCCcEEECCCCCCCCC----ChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 33344889999999999875432 222558999999999999999999999999999999999999 8899999999
Q ss_pred CCCCCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccCC
Q 002187 636 LYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVGI 681 (955)
Q Consensus 636 L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 681 (955)
|.+|++|+|++|. +..+|..|.+|++|++|++++|......|..+
T Consensus 292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999999997 88999999999999999999995444445444
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=1.9e-10 Score=134.13 Aligned_cols=104 Identities=22% Similarity=0.195 Sum_probs=94.2
Q ss_pred cccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCcEeeCCC
Q 002187 591 CLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLMHLENDQ 670 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~ 670 (955)
.|++|+|++|.+..+|. ++++++|++|+|++|. ++.+|..++++++|++|+|++|. +..+| .+..|++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence 59999999999999987 9999999999999999 99999999999999999999998 88898 899999999999999
Q ss_pred CCCCccc--ccCCCCCCCCCccceeEecCcc
Q 002187 671 TDSLRYL--PVGIGELISLRRVSKLVVGGGY 699 (955)
Q Consensus 671 ~~~l~~~--p~~i~~l~~L~~L~~~~~~~~~ 699 (955)
| .+..+ |..++.+++|+.|++..+....
T Consensus 518 N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 N-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp S-CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred C-CCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 9 55566 8899999999999887665543
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=1.3e-09 Score=108.39 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=46.0
Q ss_pred cccEEEcCCCCccccccc--ccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEe
Q 002187 591 CLRTLKLDGSVIIEIPTN--IEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHL 666 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~--i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L 666 (955)
.|++|++++|.+..++.. ++.+++|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|. .+..+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence 444555555554444432 4455555555555554 4333 3444455555555555544 333332 24445555555
Q ss_pred eCCCCCCCcccccCCCCCCCCCcccee
Q 002187 667 ENDQTDSLRYLPVGIGELISLRRVSKL 693 (955)
Q Consensus 667 ~l~~~~~l~~~p~~i~~l~~L~~L~~~ 693 (955)
++++|......|..++.+++|+.|++.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 555443222233444444444444443
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=3.3e-09 Score=115.18 Aligned_cols=187 Identities=13% Similarity=0.086 Sum_probs=117.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC-CceEEEEeCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF-EKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 255 (955)
.+++|++..++.+.+++... ....+.|+|++|+||||+|+.+++... ...+ ...+++..+...... ..+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 56999999999999998643 222388999999999999999998421 1112 123444444432322 22222
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHHh-hcCc
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VACI-MGST 332 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 332 (955)
+..+..... .+ .+++.+||+||++.-....++.+...+.....++++|+||+... +... ....
T Consensus 93 ~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 222210000 01 35688999999976544455666666665556788888886632 2222 2234
Q ss_pred ceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHH-HHHHHHH
Q 002187 333 NIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLA-AKTIACL 389 (955)
Q Consensus 333 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPla-i~~~~~~ 389 (955)
..+.+.+++.++..+++...+...+... -.+....|++.|+|.|.. +..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5899999999999999988664222111 134567899999999954 4444433
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=1.4e-09 Score=108.05 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=49.7
Q ss_pred cccEEEcCCCCcccccccccCCCCcceEEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeC
Q 002187 591 CLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLEN 668 (955)
Q Consensus 591 ~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l 668 (955)
.|++|+|++|.+..+|..+.++.+|++|+|++|. ++.+| ..+.++++|++|+|++|. +..+|. .+..+++|++|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 4555555555555555555555555555555555 44444 235555555555555554 444332 3455555555555
Q ss_pred CCCCCCcccccC-CCCCCCCCcccee
Q 002187 669 DQTDSLRYLPVG-IGELISLRRVSKL 693 (955)
Q Consensus 669 ~~~~~l~~~p~~-i~~l~~L~~L~~~ 693 (955)
++| .+..+|.. +..+++|+.|++.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 110 HGN-DISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECC
T ss_pred CCC-CCCeeChhhhhcCccccEEEeC
Confidence 555 33334432 4445555554443
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=1.3e-09 Score=118.46 Aligned_cols=275 Identities=17% Similarity=0.134 Sum_probs=145.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
..++|++..++.+..++..... .......+.|+|.+|+|||++|+.+++. ... ..+++.++......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH----
Confidence 5799999999988888753210 0112346889999999999999999883 322 23345444332222111
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC------------------CCcEEEE
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL------------------HESKILI 318 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 318 (955)
..+ ... ..+..+|+||++..........+...+.... +..++|.
T Consensus 82 ~~l-----------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 AIL-----------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp HHH-----------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred HHH-----------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111 110 1345688899996543333344444333211 2346676
Q ss_pred ecCChh-HHHhh-cC-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHHhcC---
Q 002187 319 TTRKET-VACIM-GS-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRS--- 392 (955)
Q Consensus 319 Ttr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~--- 392 (955)
||.... +...+ .- ...+.+.+++.++..+++.+.+...+.. --.+..+.+++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR----ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC----CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 665432 21111 11 2578999999999999998876433221 11356788999999999888766554321
Q ss_pred ---C--CCHHHHHHHHhhhchh---hhhhhcchhhHHHHhhhcCCHhHHHHHhhhccCCCCcccchHHHHH----HHHHc
Q 002187 393 ---K--NTEKEWQNILESEIWE---IEEVEKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIE----LWMAQ 460 (955)
Q Consensus 393 ---~--~~~~~w~~~~~~~~~~---~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~----~W~a~ 460 (955)
. -+.+....+....... +...+..+...+.-.|..=+.....+-..++ +++..+.+ +-+..
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lg-------i~~~tl~~~l~~~~i~~ 292 (324)
T 1hqc_A 220 VAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALS-------EDPGTLEEVHEPYLIRQ 292 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTT-------SCHHHHHHHTHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhC-------CCHHHHHHHHhHHHHHh
Confidence 1 2344444443321100 0111111222222222211112223333333 23333332 35668
Q ss_pred CCcccC-CCCcHHHHHHHHHH-HHhhccCccc
Q 002187 461 GYLSEK-GPKEMEDIGEEYFN-TLASRSFFQD 490 (955)
Q Consensus 461 g~i~~~-~~~~~~~~~~~~~~-~L~~~~ll~~ 490 (955)
||+... .+....+.|.+||+ ++.+|+||||
T Consensus 293 ~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 293 GLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred cchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 898654 34567789999998 9999999986
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.5e-09 Score=118.19 Aligned_cols=270 Identities=11% Similarity=0.064 Sum_probs=150.1
Q ss_pred CCcccEEEcCCCCcccccccccC-CCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCc-cccC-------
Q 002187 589 LTCLRTLKLDGSVIIEIPTNIEK-LLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQ-GIGK------- 659 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~lp~~i~~-L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~------- 659 (955)
+..|+.|.++++--..-...+.. +.+|++|||++|. +......-+.++.+..+.+..+ .+|. .+..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcce-eEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 34578888876521111122333 8889999999998 7622111223333455555554 2343 3566
Q ss_pred -CCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhcc
Q 002187 660 -LRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELE 737 (955)
Q Consensus 660 -L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~ 737 (955)
+++|+.|.+.. .++.++.+ +..+++|+.|.+..+.........+..
T Consensus 99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~------------------------------ 146 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD------------------------------ 146 (329)
T ss_dssp ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT------------------------------
T ss_pred ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcC------------------------------
Confidence 99999999987 45666654 778888888877644322211111111
Q ss_pred CCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCC-eEEEeeecCCCCCCCCChhc----ccccccEE
Q 002187 738 KKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLK-ELRIHEYRGRRNVVPKNWVM----SLTNLRVL 812 (955)
Q Consensus 738 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~p~~~~----~l~~L~~L 812 (955)
+.++..+.+... ..+..... -....+..+.+|+ .+.+.... . + +..+. ...++..+
T Consensus 147 -~~~l~~l~~~~~------~~~~~~~~-------i~~~~f~~~~~L~~~i~~~~~~--~--l-~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 147 -SVTAIFIPLGSS------DAYRFKNR-------WEHFAFIEGEPLETTIQVGAMG--K--L-EDEIMKAGLQPRDINFL 207 (329)
T ss_dssp -TTCEEEECTTCT------HHHHTSTT-------TTTSCEEESCCCEEEEEECTTC--C--H-HHHHHHTTCCGGGCSEE
T ss_pred -CCceEEecCcch------hhhhcccc-------ccccccccccccceeEEecCCC--c--H-HHHHhhcccCccccceE
Confidence 111111111000 00000000 0000122234555 33333211 1 2 21111 36778888
Q ss_pred EEeCCCCCCcCCCC-CCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccc
Q 002187 813 HLRWCSNCEHLPPL-GKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGE 891 (955)
Q Consensus 813 ~L~~~~~~~~l~~l-~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 891 (955)
.+.+.-.......+ ..+++|+.|+|.++. ++.++...+. ++++|+.|.+.+. ++.+.. ..
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~-----------~~~~L~~l~l~~n--i~~I~~-----~a 268 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA-----------QKKYLLKIKLPHN--LKTIGQ-----RV 268 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT-----------TCTTCCEEECCTT--CCEECT-----TT
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh-----------CCCCCCEEECCcc--cceehH-----HH
Confidence 88775211111111 137899999998765 7888876553 6889999999873 554433 35
Q ss_pred cccCcccc-eeeeccCcCCCCCC-CCCCCCCCcCeEEEecCCCcccc
Q 002187 892 IRIMPRLS-SLSIVYCPKLKALP-DHLLQKTTLQRLSIFSCPILKKT 936 (955)
Q Consensus 892 ~~~~~~L~-~L~i~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~ 936 (955)
+..|++|+ .|.+.+ .++.++ ..+.+|++|+.|++.++ ++..+
T Consensus 269 F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I 312 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTL 312 (329)
T ss_dssp TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEE
T ss_pred hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCcc
Confidence 78899999 999988 578886 56888999999998654 34444
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.91 E-value=1.9e-09 Score=105.58 Aligned_cols=120 Identities=28% Similarity=0.389 Sum_probs=71.7
Q ss_pred EEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccccc-ccCCCCcceEEeec
Q 002187 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IEKLLHLKYLNLSC 622 (955)
Q Consensus 544 l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~L~~Lr~L~L~~ 622 (955)
+....+.+..+|... .++|++|.+.++....+ .+..|..+++|++|++++|.+..+|.. ++.+++|++|+|++
T Consensus 12 l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI---PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EECCSSCCSSCCTTC---CTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEecCCCCccCCCCC---CCCCcEEEeCCCcccEe---CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 344444444444332 25666777666653221 222356667777777777776666543 46677777777777
Q ss_pred CCCccccchh-hcCCCCCCEEeeCCCCCccccCccc-cCCCCCcEeeCCCC
Q 002187 623 QMEIERLPET-LCELYNLERLNVDSCSNLRELPQGI-GKLRKLMHLENDQT 671 (955)
Q Consensus 623 ~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~i-~~L~~L~~L~l~~~ 671 (955)
|. ++.+|.. +.++++|++|++++|. +..+|..+ ..+++|++|++++|
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 66 6666543 4666777777777765 56666543 55677777777666
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=2e-11 Score=122.31 Aligned_cols=103 Identities=20% Similarity=0.200 Sum_probs=52.5
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLE 640 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq 640 (955)
.+++|++|++.++....+ + .+..+++|++|++++|.+..+|..++.+++|++|+|++|. ++.+| .++++++|+
T Consensus 46 ~l~~L~~L~ls~n~l~~l----~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKI----S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLR 118 (198)
T ss_dssp HTTTCSEEECSEEEESCC----C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSS
T ss_pred cCCCCCEEECCCCCCccc----c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCC
Confidence 555555555555433221 1 2444555555555555555555555555555555555554 55554 355555555
Q ss_pred EEeeCCCCCccccCc--cccCCCCCcEeeCCCC
Q 002187 641 RLNVDSCSNLRELPQ--GIGKLRKLMHLENDQT 671 (955)
Q Consensus 641 ~LdL~~~~~l~~lp~--~i~~L~~L~~L~l~~~ 671 (955)
+|++++|. +..+|. .+..+++|++|++++|
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 55555554 444432 3455555555555555
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=4.6e-09 Score=102.29 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=41.4
Q ss_pred CcccEEEcCCCCcccc-cccccCCCCcceEEeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEe
Q 002187 590 TCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHL 666 (955)
Q Consensus 590 ~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L 666 (955)
+.|++|+|++|.+..+ |..++++++|++|+|++|. ++.+|.. +.++++|++|+|++|. +..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEE
Confidence 4455555555555544 3345555555555555555 5555543 3455555555555554 4444443 4455555555
Q ss_pred eCCCC
Q 002187 667 ENDQT 671 (955)
Q Consensus 667 ~l~~~ 671 (955)
++++|
T Consensus 111 ~L~~N 115 (174)
T 2r9u_A 111 YLYNN 115 (174)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 55554
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=5.6e-09 Score=103.62 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=86.2
Q ss_pred ccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCC
Q 002187 592 LRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQ 670 (955)
Q Consensus 592 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~ 670 (955)
-++++++++.+..+|..+. .+|++|+|++|. ++.+|..+.++++|++|+|++|. +..++. .+..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 3689999999999998765 689999999999 99999999999999999999998 777764 589999999999999
Q ss_pred CCCCccccc-CCCCCCCCCccceeEecC
Q 002187 671 TDSLRYLPV-GIGELISLRRVSKLVVGG 697 (955)
Q Consensus 671 ~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 697 (955)
|. +..+|. .+..+++|+.|++..+..
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCC
Confidence 94 555554 588899999988765543
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=4.4e-09 Score=104.46 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=85.4
Q ss_pred ccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchh--hcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeC
Q 002187 592 LRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPET--LCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLEN 668 (955)
Q Consensus 592 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~--i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l 668 (955)
-++++++++.++.+|..+.. +|++|+|++|. ++.+|.. ++++++|++|+|++|. +..+ |..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEEC
Confidence 37899999999999987765 99999999998 8888864 8999999999999998 6665 778999999999999
Q ss_pred CCCCCCcccc-cCCCCCCCCCccceeEecC
Q 002187 669 DQTDSLRYLP-VGIGELISLRRVSKLVVGG 697 (955)
Q Consensus 669 ~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~ 697 (955)
++|. +..++ ..++.+++|+.|++..+..
T Consensus 86 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 86 GENK-IKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp CSCC-CCEECSSSSTTCTTCCEEECCSSCC
T ss_pred CCCc-CCccCHHHhcCCCCCCEEECCCCcC
Confidence 9994 45554 4488899999988766544
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=5.9e-09 Score=101.15 Aligned_cols=101 Identities=30% Similarity=0.410 Sum_probs=64.6
Q ss_pred ccEEEcCCCCcccccccccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCC
Q 002187 592 LRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLEND 669 (955)
Q Consensus 592 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~ 669 (955)
.++|+++++.+..+|..+. .+|++|+|++|. ++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 4567777777776766553 667777777776 6655 4456677777777777766 6666554 3567777777777
Q ss_pred CCCCCcccccC-CCCCCCCCccceeEecC
Q 002187 670 QTDSLRYLPVG-IGELISLRRVSKLVVGG 697 (955)
Q Consensus 670 ~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 697 (955)
+| .+..+|.. +..+++|+.|++..+..
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 66 44555543 66666666666655443
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=2.6e-11 Score=121.42 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=86.3
Q ss_pred HhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccccchhhcCCCCCCEEeeCCCCCccccCccccCCCCCc
Q 002187 585 LFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKLRKLM 664 (955)
Q Consensus 585 ~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L~ 664 (955)
.|..+++|++|+|++|.+..+| .++++++|++|++++|. ++.+|..+..+++|++|++++|. +..+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCC
Confidence 4778889999999999888888 88889999999999888 88888888888899999999887 77777 688888999
Q ss_pred EeeCCCCCCCccccc--CCCCCCCCCccceeEec
Q 002187 665 HLENDQTDSLRYLPV--GIGELISLRRVSKLVVG 696 (955)
Q Consensus 665 ~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~ 696 (955)
+|++++| .+..+|. .+..+++|+.|++..+.
T Consensus 119 ~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 9999887 4554443 56777777777765543
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=1.3e-08 Score=99.54 Aligned_cols=106 Identities=28% Similarity=0.412 Sum_probs=87.6
Q ss_pred CCcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcE
Q 002187 589 LTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQG-IGKLRKLMH 665 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~ 665 (955)
.+.|++|++++|.+..+|. .++.+.+|++|++++|. ++.+|.. ++++++|++|++++|. +..+|.. +..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCE
Confidence 4689999999999988875 46899999999999998 8888765 6899999999999998 7777765 678999999
Q ss_pred eeCCCCCCCcccccC-CCCCCCCCccceeEecC
Q 002187 666 LENDQTDSLRYLPVG-IGELISLRRVSKLVVGG 697 (955)
Q Consensus 666 L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 697 (955)
|++++| .++.+|.. +..+++|+.|++..+..
T Consensus 105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 105 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 999988 56677766 47788888887765543
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3.8e-08 Score=106.95 Aligned_cols=186 Identities=14% Similarity=0.037 Sum_probs=116.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc-C-CceEEEEeCCcccHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-F-EKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~~~~~ 254 (955)
.+++|++..++.+..++... ....+.++|++|+||||+|+.+++. .... + ...+.+..+....... .+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINV-IRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHT-THH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHH-HHH
Confidence 46999999999999988643 3334899999999999999999984 2221 1 1233444433211111 111
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHHh-hcCc
Q 002187 255 IIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VACI-MGST 332 (955)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 332 (955)
.+..+.... ....+++.+||+||++.-....+..+...+.....++++|+||.... +... ....
T Consensus 96 ~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 111110000 00125678999999976555556667777666566788888887642 1111 1223
Q ss_pred ceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHH
Q 002187 333 NIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACL 389 (955)
Q Consensus 333 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~ 389 (955)
..+.+.+++.++...++...+...+.. --.+..+.|++.++|.|..+..+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 478999999999999998876433221 11345678889999999876554443
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.3e-07 Score=100.04 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=106.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc---C--CceEEEEeCCcccHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK---F--EKRMWICVSELFDEFRIA 252 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F--~~~~wv~vs~~~~~~~~~ 252 (955)
.+.||+++++.|...|...-. .+....+.|+|++|+|||++|+.|++....... . -..+.|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 489999999999988865421 235668899999999999999999995432111 1 135677887888889999
Q ss_pred HHHHHHHcCCCCCCC-ChHHHHHHHHHH--hcCceEEEEEeCCCCccccChhhHHhhcc----CCCCCcEEEEecCChh-
Q 002187 253 RAIIEALTGSASNFG-EFQSLMQHIQEC--VQRKKFLLVLDDVWNEDYCKWEPFYHCLK----DGLHESKILITTRKET- 324 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~k~~LlVlDdvw~~~~~~~~~l~~~l~----~~~~gs~iivTtr~~~- 324 (955)
..|++++.+...... ..+.+...+... -+++++++|||+++.-. .-+.+...+. ...+. .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~-~vI~i~n~~d~ 175 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKL-SIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCE-EEEEECCSSCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcE-EEEEEecCccc
Confidence 999999975432222 223333333321 24678999999996532 2233333332 12222 2333343321
Q ss_pred ----HH----HhhcCcceEeCCCCChhhHHHHhHhhhc
Q 002187 325 ----VA----CIMGSTNIISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 325 ----v~----~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 354 (955)
+. ..++ ...+.+++.+.+|-.+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1111 24789999999999999988763
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.77 E-value=1.1e-08 Score=99.64 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=84.2
Q ss_pred ccEEEcCCCCcccccccccCCCCcceEEeecCCCcccc-chhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCC
Q 002187 592 LRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIERL-PETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLEND 669 (955)
Q Consensus 592 Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~L-P~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~ 669 (955)
-+.++++++.+..+|..+. .+|++|+|++|. ++.+ |..++++++|++|+|++|. +..+|.. +..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 3688999999988988775 889999999998 7777 5678899999999999987 8888876 4789999999998
Q ss_pred CCCCCcccccC-CCCCCCCCccceeEecCc
Q 002187 670 QTDSLRYLPVG-IGELISLRRVSKLVVGGG 698 (955)
Q Consensus 670 ~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~ 698 (955)
+| .+..+|.. +..+++|+.|++..+...
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 88 56677765 888999999888776544
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=5.5e-08 Score=94.26 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=70.6
Q ss_pred CCcccEEEcCCCCcccc-cccccCCCCcceEEeecCCCccccchh-hcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcE
Q 002187 589 LTCLRTLKLDGSVIIEI-PTNIEKLLHLKYLNLSCQMEIERLPET-LCELYNLERLNVDSCSNLRELPQG-IGKLRKLMH 665 (955)
Q Consensus 589 l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~ 665 (955)
.+.|++|+|++|.+..+ |..++++.+|++|+|++|. ++.+|.. +.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 36789999999999887 5678999999999999998 8888865 5899999999999988 7888765 788999999
Q ss_pred eeCCCCC
Q 002187 666 LENDQTD 672 (955)
Q Consensus 666 L~l~~~~ 672 (955)
|++++|.
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999883
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.61 E-value=3.2e-07 Score=99.20 Aligned_cols=182 Identities=9% Similarity=0.017 Sum_probs=113.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 255 (955)
.+++|++..++.+.+++... ....+.++|.+|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 46999999999988887532 333489999999999999999988421 11111 2334444432111
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHH--h-cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHHh-hc
Q 002187 256 IEALTGSASNFGEFQSLMQHIQEC--V-QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VACI-MG 330 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~ 330 (955)
............. + .+++.++|+|++..-.......+...+.....+.++|+||.... +... ..
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25678999999976544445556666665556778888876543 2222 22
Q ss_pred CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 331 STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 331 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
....+.+.+++.++...++...+...+... -.+..+.+++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 345899999999999999988764332211 13456788899999998655443
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=3.2e-06 Score=93.89 Aligned_cols=124 Identities=11% Similarity=0.161 Sum_probs=79.4
Q ss_pred CCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCC----CcCCC--CCCCCCcceeeecCCCCceEeCccccCCc
Q 002187 781 PNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNC----EHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLGVE 854 (955)
Q Consensus 781 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~----~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 854 (955)
.+|+.+.|.+ .... +....|..|++|+.+.+.++... ..++. +..|++|+.+.|.+ +++.++...+.
T Consensus 248 ~~L~~i~lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-- 320 (401)
T 4fdw_A 248 SGITTVKLPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-- 320 (401)
T ss_dssp CCCSEEEEET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT--
T ss_pred CCccEEEeCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc--
Confidence 4566666632 2222 33566677788888888776321 12433 77888888888863 47777765443
Q ss_pred cCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCC-CCCCCC-CcCeEEEec
Q 002187 855 RDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPD-HLLQKT-TLQRLSIFS 929 (955)
Q Consensus 855 ~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~l~-~L~~L~l~~ 929 (955)
++++|+.+.|.. +++.+.. ..+..+ +|+.|.+.++. +..++. .+..++ +++.|.+-.
T Consensus 321 ---------~c~~L~~l~lp~--~l~~I~~-----~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 321 ---------GNRKVTQLTIPA--NVTQINF-----SAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ---------TCCSCCEEEECT--TCCEECT-----TSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECG
T ss_pred ---------CCCCccEEEECc--cccEEcH-----HhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCH
Confidence 678899998865 3444332 256778 99999999885 455543 355553 678888764
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.61 E-value=4e-07 Score=100.85 Aligned_cols=195 Identities=14% Similarity=0.178 Sum_probs=113.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|++..++.+...+.... ....+.|+|..|+||||+|+.+++.......+. ...+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc----HHHHHHh
Confidence 469999999999999986432 234788999999999999999987432111110 0000100 0011111
Q ss_pred HHH-------cCC-CCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HH
Q 002187 257 EAL-------TGS-ASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VA 326 (955)
Q Consensus 257 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~ 326 (955)
... ... .....+...+...+... ..+++.+||+||+..-+......+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01111222222211110 135678999999976554556667777766555677777776432 22
Q ss_pred H-hhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 327 C-IMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 327 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
. .......+.+.+++.++...++.+.+...+... -.+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 2 222346899999999999999987653222111 13456789999999998876654
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=2.9e-06 Score=94.25 Aligned_cols=260 Identities=12% Similarity=0.131 Sum_probs=145.0
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccccc-cccCCCCcceEEeecCCCccccc-hhhcCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPT-NIEKLLHLKYLNLSCQMEIERLP-ETLCELYN 638 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~L~~Lr~L~L~~~~~i~~LP-~~i~~L~~ 638 (955)
.+..+.++.+...- ..+....|.++ +|+.+.+..+ +..++. .|.++ +|+.+.+.. . ++.++ ..+.++.+
T Consensus 111 ~~~~l~~i~ip~~i----~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~-l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 111 ILKGYNEIILPNSV----KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-T-LEQLKEDIFYYCYN 181 (401)
T ss_dssp ECSSCSEEECCTTC----CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-T-CCEECSSTTTTCTT
T ss_pred ecCCccEEEECCcc----CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-C-ccEehHHHhhCccc
Confidence 34555555554421 11112235564 6888887665 555543 45553 688888875 3 66666 45777888
Q ss_pred CCEEeeCCCCCccccCccccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEecCccCCccCccccccCCCCCCc
Q 002187 639 LERLNVDSCSNLRELPQGIGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQC 717 (955)
Q Consensus 639 Lq~LdL~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l 717 (955)
|+.+++.+|. +..+|.......+|+.+.+..+ ++.++.. +..+++|+.+.+.. .+..
T Consensus 182 L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~---------~l~~---------- 239 (401)
T 4fdw_A 182 LKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE---------NVST---------- 239 (401)
T ss_dssp CCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT---------TCCE----------
T ss_pred CCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC---------CccC----------
Confidence 8888888776 7777776555678888877643 4444433 55566666554321 0000
Q ss_pred eEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCC--
Q 002187 718 RIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRR-- 795 (955)
Q Consensus 718 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-- 795 (955)
|.. ..+.. .+|+.+.+..+ +.... ...+..+++|+.+.+.++....
T Consensus 240 -I~~------------~aF~~-~~L~~i~lp~~-i~~I~-----------------~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 240 -IGQ------------EAFRE-SGITTVKLPNG-VTNIA-----------------SRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp -ECT------------TTTTT-CCCSEEEEETT-CCEEC-----------------TTTTTTCTTCCEEEEESSCCCCCT
T ss_pred -ccc------------ccccc-CCccEEEeCCC-ccEEC-----------------hhHhhCCCCCCEEEeCCccccCCc
Confidence 000 11222 35666666322 11110 1255667777777777655430
Q ss_pred -CCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceee
Q 002187 796 -NVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELR 872 (955)
Q Consensus 796 -~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 872 (955)
..+++..|..|++|+.+.|.+ .++.++. +..|++|+.|.|.. +++.++...+. ++ +|+.+.
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~-----------~~-~L~~l~ 351 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN-----------NT-GIKEVK 351 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSS-----------SS-CCCEEE
T ss_pred ccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCC-----------CC-CCCEEE
Confidence 003356667788888888874 3555544 77788888888843 36667655443 45 788888
Q ss_pred ecccccccccccccccccccccCc-ccceeeecc
Q 002187 873 FWSMKELEEWDFVTAVKGEIRIMP-RLSSLSIVY 905 (955)
Q Consensus 873 l~~~~~L~~~~~~~~~~~~~~~~~-~L~~L~i~~ 905 (955)
+.++ .+..+.. ..+..++ ++..|.+-.
T Consensus 352 l~~n-~~~~l~~-----~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 352 VEGT-TPPQVFE-----KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECCS-SCCBCCC-----SSCCCSCTTCCEEEECG
T ss_pred EcCC-CCccccc-----ccccCCCCCccEEEeCH
Confidence 8765 2222211 1334453 566666654
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.52 E-value=3.6e-07 Score=90.46 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=83.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc-----cCCceEEEEeCCcccHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-----KFEKRMWICVSELFDEFRI 251 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~~~~~~~ 251 (955)
..++||+++++.+.+.+... ....+.|+|.+|+|||++|+.+++...-.. .....+++.++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------ 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH------
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH------
Confidence 46899999999999998542 334678999999999999999988432110 1112334432211
Q ss_pred HHHHHHHHcCCCCCCCChHH-HHHHHHHHh-cCceEEEEEeCCCCcc-------ccC-hhhHHhhccCCCCCcEEEEecC
Q 002187 252 ARAIIEALTGSASNFGEFQS-LMQHIQECV-QRKKFLLVLDDVWNED-------YCK-WEPFYHCLKDGLHESKILITTR 321 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~-~~~l~~~l~~~~~gs~iivTtr 321 (955)
+.. ......... +...+.... .+++.+|||||++... ... ...+...+.. . +..+|.||.
T Consensus 90 -------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~-~~~~i~~~~ 159 (195)
T 1jbk_A 90 -------VAG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATT 159 (195)
T ss_dssp -------HTT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T-SCCEEEEEC
T ss_pred -------hcc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C-CeEEEEeCC
Confidence 000 000001111 111111111 3567899999996532 112 2233333322 2 345666666
Q ss_pred ChhHHH-------hhcCcceEeCCCCChhhHHHHh
Q 002187 322 KETVAC-------IMGSTNIISINVLSEMGCWLVF 349 (955)
Q Consensus 322 ~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf 349 (955)
...... .......+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 544221 1122336889999988887665
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=2.5e-07 Score=101.33 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=45.7
Q ss_pred hcCCCcccEEEcCC-CCccccc-ccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCccccCccccCCCC
Q 002187 586 FDKLTCLRTLKLDG-SVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRELPQGIGKLRK 662 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~-~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~ 662 (955)
+..+++|++|+|++ |.+..+| ..|++|.+|++|+|++|. ++.+|. .+++|++|++|+|++|. +..+|..+....+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCC
Confidence 55555566666654 5555554 345556666666666655 554443 44556666666666655 5555544333333
Q ss_pred CcEeeCCCC
Q 002187 663 LMHLENDQT 671 (955)
Q Consensus 663 L~~L~l~~~ 671 (955)
|+.|++.+|
T Consensus 105 L~~l~l~~N 113 (347)
T 2ifg_A 105 LQELVLSGN 113 (347)
T ss_dssp CCEEECCSS
T ss_pred ceEEEeeCC
Confidence 566665555
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.39 E-value=9.6e-07 Score=91.00 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=100.4
Q ss_pred Cccccch---hHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGRE---KEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~---~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
.+++|++ ..++.+..+.... ....+.|+|.+|+||||+|+.+++. .......+.|+.++...+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~~---- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASIS---- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGSC----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHHH----
Confidence 4577633 4555565555432 3457889999999999999999984 33333446677765422110
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccC--hhhHHhhccC--CCCCcEEEEecCChh-----
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCK--WEPFYHCLKD--GLHESKILITTRKET----- 324 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~--~~~gs~iivTtr~~~----- 324 (955)
... + +.+ .+..+||+||++...... .+.+...+.. .....++|+||+...
T Consensus 96 ----------------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 000 0 001 345699999996543222 2333333221 111225777776421
Q ss_pred ----HHHhhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 325 ----VACIMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 325 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
+...+.....+.+++++.++..+++...+...+.. --.+..+.|++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHccCCHHHHHHHH
Confidence 11222223689999999999999998876422211 113556788889999886665443
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.36 E-value=8.9e-06 Score=88.48 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=105.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.+++|++..++.+..++..... .......|.|+|.+|+|||++|+.+++. .... .+.+.++.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch-------
Confidence 35799999999999888864311 1123446899999999999999999873 3222 233333222111
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC------------------CCcEEE
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL------------------HESKIL 317 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii 317 (955)
......+.. ..+..+|+||++..........+...+.... ++..+|
T Consensus 95 --------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 --------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp --------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred --------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 111111111 2456788999997544333444554443321 124566
Q ss_pred EecCChh-HHHh-hcC-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 318 ITTRKET-VACI-MGS-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 318 vTtr~~~-v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
.+|.... +... ..- ...+.+++++.++...++.+.+..... .--.+..+.|++.+.|.|-.+..+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6665432 1111 112 357999999999999999877643221 112355777888999999555443
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.2e-06 Score=92.67 Aligned_cols=196 Identities=10% Similarity=0.018 Sum_probs=114.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEFRIARA 254 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 254 (955)
-.+++|++..++.+..++... ....+.|+|.+|+||||+|+.+++.......+. ..+.+.++...... .+++
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTT
T ss_pred HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHH
Confidence 357999999999999988543 222388999999999999999998532111222 23344444432222 2222
Q ss_pred HHHHHcCC-CCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHHh-hcC
Q 002187 255 IIEALTGS-ASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VACI-MGS 331 (955)
Q Consensus 255 i~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~ 331 (955)
.+..+... ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +... ...
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222211 1000000 00011123556999999865444445556666655555677777775432 2111 122
Q ss_pred cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 332 TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 332 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
...+.+.+++.++....+...+...+... -.+..+.|++.++|.|-.+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 34789999999999999988764322111 13567889999999998654443
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.35 E-value=5.5e-07 Score=98.59 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=75.1
Q ss_pred EEEcCCC-CcccccccccCCCCcceEEeec-CCCccccc-hhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCC
Q 002187 594 TLKLDGS-VIIEIPTNIEKLLHLKYLNLSC-QMEIERLP-ETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLEND 669 (955)
Q Consensus 594 ~L~L~~~-~~~~lp~~i~~L~~Lr~L~L~~-~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~ 669 (955)
.++++++ .+..+|. ++.+.+|++|+|++ |. ++.+| ..+++|.+|++|+|++|. +..+|. .|.+|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCC
Confidence 4577777 7888888 88888888888886 66 77777 468888888888888887 666554 56788888888888
Q ss_pred CCCCCcccccCCCCCCCCCccceeEecCc
Q 002187 670 QTDSLRYLPVGIGELISLRRVSKLVVGGG 698 (955)
Q Consensus 670 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 698 (955)
+| .+..+|..+....+|+.|.+..+...
T Consensus 89 ~N-~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence 87 56677766544444777777665544
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=8.8e-06 Score=90.62 Aligned_cols=309 Identities=11% Similarity=0.076 Sum_probs=161.4
Q ss_pred cchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccch-
Q 002187 554 VPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPE- 631 (955)
Q Consensus 554 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~- 631 (955)
+....+..|.+|+++.+...- ..+ -...|.+|.+|+.+++..+ ++.++ ..+.++..|+.+.+..+ +..++.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~i-~~I---~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~ 134 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPSTV-REI---GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVE 134 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTTC-CEE---CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTT
T ss_pred hHHHHhhCCCCceEEEeCCCc-cCc---chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecce
Confidence 344445578888888886431 111 1234788888888888654 44553 45677777877766543 344332
Q ss_pred hhcCCCCCCEEeeCCCCCcccc-CccccCCCCCcEeeCCCCCCCcccccC-CCCCCCCCccceeEecCccCCccCccccc
Q 002187 632 TLCELYNLERLNVDSCSNLREL-PQGIGKLRKLMHLENDQTDSLRYLPVG-IGELISLRRVSKLVVGGGYDKACSLGSLK 709 (955)
Q Consensus 632 ~i~~L~~Lq~LdL~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~l~~L~ 709 (955)
.+.++..+........ ..+ ...+..+.+|+.+.+..+ +..++.+ +..+++|+.+.+...- .......+..+.
T Consensus 135 aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~-~~I~~~~F~~~~ 208 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNL-KIIRDYCFAECI 208 (394)
T ss_dssp TTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCT
T ss_pred eeecccccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCc-eEeCchhhcccc
Confidence 3444433333322222 222 234667777888877654 2334333 5566667666542210 000012222233
Q ss_pred cCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEe
Q 002187 710 KLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIH 789 (955)
Q Consensus 710 ~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 789 (955)
.|..+. +.. ..... ........+|+.+.+.... .... ...+..+.+|+.+.+.
T Consensus 209 ~L~~i~---~~~--~~~~i----~~~~~~~~~l~~i~ip~~~-~~i~-----------------~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 209 LLENME---FPN--SLYYL----GDFALSKTGVKNIIIPDSF-TELG-----------------KSVFYGCTDLESISIQ 261 (394)
T ss_dssp TCCBCC---CCT--TCCEE----CTTTTTTCCCCEEEECTTC-CEEC-----------------SSTTTTCSSCCEEEEC
T ss_pred ccceee---cCC--CceEe----ehhhcccCCCceEEECCCc-eecc-----------------cccccccccceeEEcC
Confidence 322221 110 00000 0111223466666654220 0000 1134456777777776
Q ss_pred eecCCCCCCCCChhcccccccEEEEeCCCCCCcCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccc
Q 002187 790 EYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLK 869 (955)
Q Consensus 790 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 869 (955)
.+... +....+..+..|+.+.+.... . .-..+..+.+|+.+.+.+ +++.++...+. ++++|+
T Consensus 262 ~~~~~---i~~~~F~~~~~l~~~~~~~~~-i-~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~-----------~c~~L~ 323 (394)
T 4fs7_A 262 NNKLR---IGGSLFYNCSGLKKVIYGSVI-V-PEKTFYGCSSLTEVKLLD--SVKFIGEEAFE-----------SCTSLV 323 (394)
T ss_dssp CTTCE---ECSCTTTTCTTCCEEEECSSE-E-CTTTTTTCTTCCEEEECT--TCCEECTTTTT-----------TCTTCC
T ss_pred CCcce---eeccccccccccceeccCcee-e-cccccccccccccccccc--ccceechhhhc-----------CCCCCC
Confidence 54322 225556677777777765541 1 111256677888887743 36667655432 567788
Q ss_pred eeeecccccccccccccccccccccCcccceeeeccCcCCCCCCC-CCCCCCCcCeEEEec
Q 002187 870 ELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPD-HLLQKTTLQRLSIFS 929 (955)
Q Consensus 870 ~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~-~~~~l~~L~~L~l~~ 929 (955)
.+.|.. +++.+.. ..+..|.+|+.+.|..+ ++.++. .+.+|++|+.+.+.+
T Consensus 324 ~i~lp~--~v~~I~~-----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 324 SIDLPY--LVEEIGK-----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCT--TCCEECT-----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEEeCC--cccEEhH-----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 887753 2333322 24667888888888654 666653 467788888888864
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.22 E-value=1.9e-05 Score=88.72 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=105.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCC--ceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE--KRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
...+.|+|.+|+||||||+.+++ .....+. .+++++++ .+..++...+.... ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~---------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK---------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC---------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc---------HHHHHHHhc
Confidence 55789999999999999999998 4444442 23455433 33444555543321 112333444
Q ss_pred CceEEEEEeCCCCccc--cChhhHHhhccC-CCCCcEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHh
Q 002187 282 RKKFLLVLDDVWNEDY--CKWEPFYHCLKD-GLHESKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVF 349 (955)
Q Consensus 282 ~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 349 (955)
.+.-+|+|||++.-.. ..-+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999965321 122334443321 13467788888752 22233343467899999999999999
Q ss_pred HhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHHHH------hcCC-CCHHHHHHHHhh
Q 002187 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACL------LRSK-NTEKEWQNILES 405 (955)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~------l~~~-~~~~~w~~~~~~ 405 (955)
.+.+...+-. .++ ++...|++.++|.+-.+..+... ..++ -+.+.+..++..
T Consensus 273 ~~~~~~~~~~-i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGE-LPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCC-CCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCC-CCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8876422211 112 34667888888888654332211 1111 355666666554
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.22 E-value=2.5e-05 Score=87.51 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=103.5
Q ss_pred CccccchhHH---HHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHH
Q 002187 177 SEIVGREKEK---KELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIA 252 (955)
Q Consensus 177 ~~~vGr~~~~---~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~ 252 (955)
.+++|.+..+ ..+...+... ....+.|+|.+|+||||+|+.+++. ....| +.++.. ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 5789998877 6677777432 4467899999999999999999983 33332 222221 11211 1
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE-EecCChh--HH-Hh
Q 002187 253 RAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL-ITTRKET--VA-CI 328 (955)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~--v~-~~ 328 (955)
+.++... ......+++.+|+||++..-.....+.+...+..+ . ..+| .||.+.. +. ..
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~-v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-T-ITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT-S-CEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-c-eEEEecCCCCcccccCHHH
Confidence 2221111 01112467889999999765555556666666653 2 3344 3555432 21 22
Q ss_pred hcCcceEeCCCCChhhHHHHhHhhhcCCCCC---CCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 329 MGSTNIISINVLSEMGCWLVFEPLAFSGKST---VERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 329 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
.....++.+++++.++...++.+.+...... ....--.+..+.|++.++|.+-.+..+-
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2335688999999999999998876431110 1111224566778888888876554433
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=5.3e-06 Score=92.43 Aligned_cols=317 Identities=13% Similarity=0.076 Sum_probs=180.1
Q ss_pred CceEEEEEEccCCCCcchhhhccCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-cccccCCCCcce
Q 002187 539 KKVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-PTNIEKLLHLKY 617 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~L~~Lr~ 617 (955)
.++..+.+.. .+..+....+..|.+|+++.+..+- ..+ -...|.++..|+.+.+..+ +..+ ...+.++..+..
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l-~~I---~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSV-KMI---GRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTC-CEE---CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCc-eEc---cchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 4677777753 3555666667689999999986542 111 1234788888888777554 3332 234555544333
Q ss_pred EEeecCCCccccc-hhhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeE
Q 002187 618 LNLSCQMEIERLP-ETLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLV 694 (955)
Q Consensus 618 L~L~~~~~i~~LP-~~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~ 694 (955)
..... +..++ ..+.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ ++.++. .+..+..|+.+....
T Consensus 145 ~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 145 TIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp ECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC
Confidence 32222 33333 35778888888888654 344443 3667888888887654 333333 355666666654432
Q ss_pred ecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHh
Q 002187 695 VGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLL 774 (955)
Q Consensus 695 ~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 774 (955)
..... +... .....|+.+.+... +. ......+..+.+|+.+.+..+...- ..
T Consensus 218 ~~~~i--~~~~---~~~~~l~~i~ip~~--~~---~i~~~~f~~~~~l~~~~~~~~~~~i------------------~~ 269 (394)
T 4fs7_A 218 SLYYL--GDFA---LSKTGVKNIIIPDS--FT---ELGKSVFYGCTDLESISIQNNKLRI------------------GG 269 (394)
T ss_dssp TCCEE--CTTT---TTTCCCCEEEECTT--CC---EECSSTTTTCSSCCEEEECCTTCEE------------------CS
T ss_pred CceEe--ehhh---cccCCCceEEECCC--ce---ecccccccccccceeEEcCCCccee------------------ec
Confidence 11110 0000 11122333333211 00 0011234567778887776441100 01
Q ss_pred hhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeCccccC
Q 002187 775 EALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLG 852 (955)
Q Consensus 775 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~ 852 (955)
..+..++.++.+.+.... ++...+..+.+|+.+.+.++ ++.++. +..+.+|+.+.|.+ +++.++...+.
T Consensus 270 ~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 340 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR 340 (394)
T ss_dssp CTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT
T ss_pred cccccccccceeccCcee-----eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhcc
Confidence 244556777777665432 22345567889999988754 455543 77889999998853 47777765443
Q ss_pred CccCCCCccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeE
Q 002187 853 VERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRL 925 (955)
Q Consensus 853 ~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L 925 (955)
++.+|+.+.+.. +++.+.. ..+..|++|+.+.|... ++.+...+..+++|+.+
T Consensus 341 -----------~c~~L~~i~lp~--~l~~I~~-----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 -----------GCTSLSNINFPL--SLRKIGA-----NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp -----------TCTTCCEECCCT--TCCEECT-----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred -----------CCCCCCEEEECc--cccEehH-----HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 677888888754 3443322 25678899999988654 44455556666666654
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=2.1e-05 Score=83.25 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=101.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSK-------EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
-.+++|.+..++.+.+.+...... +-.....+.|+|.+|+|||++|+.+++. .... .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH-
Confidence 457999999999998877432000 0123446899999999999999999983 3222 22333222110
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCc-----------cccChhhHHhh---cc--CCCC
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNE-----------DYCKWEPFYHC---LK--DGLH 312 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~---l~--~~~~ 312 (955)
.. .......+...+......+..+|+||++..- .......+... +. ....
T Consensus 90 -------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 -------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 00 0001111222233333456689999999542 11111222222 21 2234
Q ss_pred CcEEEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC-ChHHHHH
Q 002187 313 ESKILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG-LPLAAKT 385 (955)
Q Consensus 313 gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~ 385 (955)
+..||.||...... ... .....+.++..+.++..+++...+..... ....+ ...+++.+.| .|-.|..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 56788888754221 111 11347899999999999999887643221 11222 3556677766 4434443
No 174
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=2.7e-05 Score=81.17 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=99.9
Q ss_pred CccccchhHHHHHHHHHh---cCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLL---CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.+..++.+.+++. .... .+....+.+.|+|.+|+|||++|+.+++. .... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 578999988777765542 2110 01123456889999999999999999983 3222 334444432110
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCc------------cccChh---hHHhhccC--CCCC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNE------------DYCKWE---PFYHCLKD--GLHE 313 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------------~~~~~~---~l~~~l~~--~~~g 313 (955)
........+...+.........+|+||+++.- ...... .+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00001122222333333456789999999642 111111 22222222 2235
Q ss_pred cEEEEecCChhH-HHh-hc---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHH
Q 002187 314 SKILITTRKETV-ACI-MG---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIA 387 (955)
Q Consensus 314 s~iivTtr~~~v-~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 387 (955)
..||.||..... ... .. -...+.++..+.++..+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 567777765432 111 11 1357789999999999999887643221 11112234678888888754 444433
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=9.8e-06 Score=88.82 Aligned_cols=197 Identities=9% Similarity=0.072 Sum_probs=106.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhh--hc--cCCc----------------
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDV--KK--KFEK---------------- 236 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~--~F~~---------------- 236 (955)
.+++|.+..++.+.+++.... .... +.|+|..|+||||+|+.+++...- .+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 568999988888887772221 1223 899999999999999988773100 00 0000
Q ss_pred ----eEEEEeCCcc-cHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC
Q 002187 237 ----RMWICVSELF-DEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL 311 (955)
Q Consensus 237 ----~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~ 311 (955)
.+.+..+... ......++++..+.....- .... .+.. +.+++-++|||++..-+......+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 0000122333332211100 0000 0000 23466799999997655444555666665444
Q ss_pred CCcEEEEecCCh-hHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHHH
Q 002187 312 HESKILITTRKE-TVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIA 387 (955)
Q Consensus 312 ~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~ 387 (955)
.+..+|++|... .+...+ .....+.+++++.++....+.+.+...+..... .+....|++.++|.+-.+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 567777777652 222222 234689999999999999998776422211110 2456778899999887665544
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.5e-05 Score=91.66 Aligned_cols=199 Identities=13% Similarity=0.136 Sum_probs=110.0
Q ss_pred CccccchhHHHHHHHHHhcCCC-----------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 002187 177 SEIVGREKEKKELVNRLLCESS-----------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL 245 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 245 (955)
.+++|++..++.+.+++..... .+.+..+.+.|+|++|+||||+|+.+++.. . + ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 5799999999999999965110 011234689999999999999999999843 1 1 2345555554
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccC---hhhHHhhccCCCCCcEEEEecCC
Q 002187 246 FDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCK---WEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 246 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
.... +....+........-..-...... .....+++.+||+|++..-.... +..+...+... +..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 4332 222222221111000000000000 00113578899999996532211 24444444432 2335555543
Q ss_pred h---hHHHhhcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC-ChHHHHHHHHH
Q 002187 323 E---TVACIMGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG-LPLAAKTIACL 389 (955)
Q Consensus 323 ~---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~~ 389 (955)
. .+.........+.+++++.++..+++...+...+....+ +....|++.++| ++-++..+..+
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTHH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2 222222234578999999999999887766432221222 246678889998 55556555433
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.11 E-value=4.8e-05 Score=82.21 Aligned_cols=170 Identities=11% Similarity=0.091 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc--------------------cCCceEEEEe
Q 002187 183 EKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK--------------------KFEKRMWICV 242 (955)
Q Consensus 183 ~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 242 (955)
++..+.+.+.+... .-...+.++|..|+||||+|+.+.+...-.. |++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34556666666432 2344788999999999999999887421111 111 222322
Q ss_pred CCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHh-----cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEE
Q 002187 243 SELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECV-----QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL 317 (955)
Q Consensus 243 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 317 (955)
.. .......+++.. +.+.+ .+++-++|+|+++.-.......+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 2567799999997655455566777776665677777
Q ss_pred EecCCh-hHHHhh-cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 318 ITTRKE-TVACIM-GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 318 vTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
++|... .+...+ .....+.+.+++.++..+.+.+.. . .. .+....+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 777654 233222 335689999999999999888764 1 11 234577899999999766543
No 178
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=3.9e-07 Score=100.23 Aligned_cols=130 Identities=18% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCcccc-----cccc-cCCCCcceEEeecCCCccc-----cch
Q 002187 563 KGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEI-----PTNI-EKLLHLKYLNLSCQMEIER-----LPE 631 (955)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~l-----p~~i-~~L~~Lr~L~L~~~~~i~~-----LP~ 631 (955)
++|++|++.+|..... .+..+...+++|+.|+|++|.+... ...+ ....+|++|+|++|. ++. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~--~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPA--GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHH--HHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHH--HHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHH
Confidence 4666666666653211 1122223344566666666665432 1112 234556666666665 432 444
Q ss_pred hhcCCCCCCEEeeCCCCCccc-----cCccccCCCCCcEeeCCCCCCCc----ccccCCCCCCCCCccceeEec
Q 002187 632 TLCELYNLERLNVDSCSNLRE-----LPQGIGKLRKLMHLENDQTDSLR----YLPVGIGELISLRRVSKLVVG 696 (955)
Q Consensus 632 ~i~~L~~Lq~LdL~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~----~~p~~i~~l~~L~~L~~~~~~ 696 (955)
.+..+++|++|+|++|. +.. ++..+...++|++|++++|.... .++..+...++|++|++..+.
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45556666666666665 432 23444555666666666663211 122223344555555554443
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.10 E-value=3.7e-05 Score=84.66 Aligned_cols=198 Identities=14% Similarity=0.084 Sum_probs=104.8
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC----CcccH
Q 002187 176 ESEIVGREKEKKE---LVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS----ELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~---i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~~~ 248 (955)
-..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++.. .... ..+.+... .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccch
Confidence 3579999988766 444443322 123578999999999999999999843 2211 11222221 12233
Q ss_pred HHHHHHHHHHHcC---------------------CCC-------C--CCChHHHHHHHHHHh-----cCc----eEEEEE
Q 002187 249 FRIARAIIEALTG---------------------SAS-------N--FGEFQSLMQHIQECV-----QRK----KFLLVL 289 (955)
Q Consensus 249 ~~~~~~i~~~l~~---------------------~~~-------~--~~~~~~~~~~l~~~l-----~~k----~~LlVl 289 (955)
...+.+....... ... . ..-...+...+.+.. .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3333333332110 000 0 000122222232222 233 349999
Q ss_pred eCCCCccccChhhHHhhccCCCCCcEEEEecCC-------------hhHH-HhhcCcceEeCCCCChhhHHHHhHhhhcC
Q 002187 290 DDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-------------ETVA-CIMGSTNIISINVLSEMGCWLVFEPLAFS 355 (955)
Q Consensus 290 Ddvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-------------~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 355 (955)
|++..-.......+...+...... .++++|.. ..+. ....-...+.+++++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999765545555566666544333 34444431 1111 11222345899999999999999877643
Q ss_pred CCCCCCcchHHHHHHHHHhhcC-CChHHHHH
Q 002187 356 GKSTVERENLEEIGREITRKCK-GLPLAAKT 385 (955)
Q Consensus 356 ~~~~~~~~~~~~~~~~i~~~c~-glPlai~~ 385 (955)
.+.. --.+..+.|++.+. |.|-.+..
T Consensus 275 ~~~~----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 275 EDVE----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TTCC----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCCC----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 2221 11345677888886 66655443
No 180
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.07 E-value=2.6e-05 Score=84.25 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=104.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 255 (955)
-.+++|.+..++.+.+++.... ...++.+.|.+|+|||++|+.+++. .. ...+.++.+.. .. ..++..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~-~~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI-DFVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-HHHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-HHHHHH
Confidence 3579999999999999996432 3357788899999999999999883 32 12445554432 22 222222
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc-ccChhhHHhhccCCCCCcEEEEecCChh-HHHh-hcCc
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED-YCKWEPFYHCLKDGLHESKILITTRKET-VACI-MGST 332 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~ 332 (955)
+....... ...+++-+|++|++..-. ....+.+...+.....+.++|+||.... +... ....
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 22211000 012367899999997654 3444555555544334567888886533 1111 1113
Q ss_pred ceEeCCCCChhhHHHHh-------HhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHH
Q 002187 333 NIISINVLSEMGCWLVF-------EPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKT 385 (955)
Q Consensus 333 ~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 385 (955)
..+.+++++.++-.+++ .+.+...+... .+ .+....|++.++|.+-.+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-AD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SC--HHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-Cc--HHHHHHHHHhCCCCHHHHHH
Confidence 57999999988843332 22221111111 11 25567788889887664433
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.03 E-value=3.3e-05 Score=82.75 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=90.6
Q ss_pred ccccchhHHHHHHHHHhcCC---------CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 178 EIVGREKEKKELVNRLLCES---------SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
.++|.+..++.+.+.+.... -........+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888887776653210 001224457899999999999999998884322222222223443311
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCc---------cccChhhHHhhccCCCCCcEEEEe
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNE---------DYCKWEPFYHCLKDGLHESKILIT 319 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 319 (955)
.+.....+ .....+...+... +.-+|+||++..- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01111000 1111222222222 3459999999632 222334555656555566788888
Q ss_pred cCChhHHHhh-------c-CcceEeCCCCChhhHHHHhHhhhc
Q 002187 320 TRKETVACIM-------G-STNIISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 320 tr~~~v~~~~-------~-~~~~~~l~~L~~~~~~~lf~~~~~ 354 (955)
|......... . ....+.+++++.++-..++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8654321110 1 136789999999999999987764
No 182
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.01 E-value=3.7e-06 Score=92.42 Aligned_cols=132 Identities=15% Similarity=0.098 Sum_probs=98.9
Q ss_pred CceEEEEEEccCCCCc-chhhhccCCCceEEEecCCCchhhH-HHHHHHh-cCCCcccEEEcCCCCccc-----cccccc
Q 002187 539 KKVFHLMLTLHRGASV-PISIWDNVKGLRSLLVKSDEYSWSI-EVLRQLF-DKLTCLRTLKLDGSVIIE-----IPTNIE 610 (955)
Q Consensus 539 ~~~r~l~l~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~-~~l~~~~-~~l~~Lr~L~L~~~~~~~-----lp~~i~ 610 (955)
..++.+.+..+.+... ...+...+++|+.|++.+|...... ..+...+ ...+.|++|+|++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4788888888876531 2233335678999999999753321 2233334 467899999999999864 556678
Q ss_pred CCCCcceEEeecCCCccc-----cchhhcCCCCCCEEeeCCCCCccc-----cCccccCCCCCcEeeCCCCC
Q 002187 611 KLLHLKYLNLSCQMEIER-----LPETLCELYNLERLNVDSCSNLRE-----LPQGIGKLRKLMHLENDQTD 672 (955)
Q Consensus 611 ~L~~Lr~L~L~~~~~i~~-----LP~~i~~L~~Lq~LdL~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 672 (955)
.+++|++|+|++|. ++. ++..+...++|++|+|++|. +.. ++..+...++|++|++++|.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 89999999999998 763 46677888999999999998 653 44556678999999999994
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.01 E-value=1.1e-05 Score=79.24 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++||+.+++.+.+.+... ....+.|+|.+|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999542 3346789999999999999999884
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.95 E-value=5.5e-05 Score=81.60 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=86.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
...+.|+|.+|+||||||+.+++.. ...-...++++++ .+...+...+... .... +.+.+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhc-C
Confidence 4468899999999999999999843 2221224455433 3333444433211 1111 222222 3
Q ss_pred eEEEEEeCCCCccc--cChhhHHhhccC-CCCCcEEEEecCCh---------hHHHhhcCcceEeCCCCChhhHHHHhHh
Q 002187 284 KFLLVLDDVWNEDY--CKWEPFYHCLKD-GLHESKILITTRKE---------TVACIMGSTNIISINVLSEMGCWLVFEP 351 (955)
Q Consensus 284 ~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 351 (955)
.-+|+|||+..-.. ...+.+...+.. ...|..||+||... .+...+.....+.+++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999965321 112233333321 12355788877542 1222233336789999 99999999988
Q ss_pred hhcCCCCCCCcchHHHHHHHHHhhcCCChH
Q 002187 352 LAFSGKSTVERENLEEIGREITRKCKGLPL 381 (955)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 381 (955)
.+...+... + .+....|++.+ |..-
T Consensus 178 ~~~~~~~~l-~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLEL-R---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCC-C---HHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCC-C---HHHHHHHHHhC-CCHH
Confidence 764322211 1 34566777777 6554
No 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.94 E-value=6.9e-06 Score=76.88 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=68.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIE 257 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 257 (955)
+++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+++...- .. ...+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~-~~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQ-GEFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TT-SCCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cC-CCEE-EECCCCCcc---------
Confidence 578999999999888754321 1224789999999999999999884211 11 1233 666543322
Q ss_pred HHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC
Q 002187 258 ALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
... ...+.. .+.-.|+||++..-.......+...+.......+||.||..
T Consensus 66 ---------~~~---~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQL---NDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCH---HHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhh---hcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 111 111111 12347899999765544455566666554455678877764
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=5.2e-06 Score=90.41 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=19.2
Q ss_pred CCCCCeEEEeeecCCCC---CCCCChhcccccccEEEEeCC
Q 002187 780 PPNLKELRIHEYRGRRN---VVPKNWVMSLTNLRVLHLRWC 817 (955)
Q Consensus 780 ~~~L~~L~l~~~~~~~~---~~~p~~~~~l~~L~~L~L~~~ 817 (955)
+++|+.|+|+.|.+... .+ +..+..+++|+.|+|++|
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L-~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLL-LDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHH-HTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCCCChHHHHHH-HhhcccCCcceEEECCCC
Confidence 45666666665543220 01 222235666777777666
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2.2e-06 Score=81.65 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCCccceeeeccccccccccccccccccccc----CcccceeeeccCcCCCC--CCCCCCCCCCcCeEEEecCCCccc
Q 002187 864 AFPKLKELRFWSMKELEEWDFVTAVKGEIRI----MPRLSSLSIVYCPKLKA--LPDHLLQKTTLQRLSIFSCPILKK 935 (955)
Q Consensus 864 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~----~~~L~~L~i~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~ 935 (955)
++++|+.|+|++|..+++..... +.. +++|+.|+|++|++++. +. .+..+++|+.|+|++|+.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~-----L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLER-----LSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHH-----HHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHH-----HHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 45555555555555554433311 112 24566666666665542 11 133456666666666666655
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.89 E-value=0.00011 Score=77.03 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=90.3
Q ss_pred CccccchhHHHHHHHH-------HhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNR-------LLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~-------L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
..++|....++.+... +... .......+.|+|.+|+|||++|+.+++. .... .+.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~~--- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDKM--- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGGC---
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHHh---
Confidence 3577887776666652 3211 1235668899999999999999999983 2222 2223322210
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCc------cccC---h-hhHHhhccC---CCCCcEE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNE------DYCK---W-EPFYHCLKD---GLHESKI 316 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~~~---~-~~l~~~l~~---~~~gs~i 316 (955)
.+. ........+...+......+..+|+||++..- .... + ..+...+.. ......|
T Consensus 102 ----------~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 ----------IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ----------TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ----------cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 00000112223333334467889999998532 1111 1 222222221 2223456
Q ss_pred EEecCChhHHHh---hcC-cceEeCCCCCh-hhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC
Q 002187 317 LITTRKETVACI---MGS-TNIISINVLSE-MGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG 378 (955)
Q Consensus 317 ivTtr~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 378 (955)
|.||........ .+. ...+.+++++. ++-..++.+.. . .. .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 777776644332 122 45788999998 66666665531 1 11 2346677777777
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=2.6e-06 Score=81.22 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=68.9
Q ss_pred ccccEEEEeCCCCCC--cCCCCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeeccccccccccc
Q 002187 807 TNLRVLHLRWCSNCE--HLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDF 884 (955)
Q Consensus 807 ~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~ 884 (955)
-+|+.|++++|. ++ .+..+..+++|+.|+|++|..++..+-....... ...++|+.|+|++|+++++-..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-------~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-------NLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-------HHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-------cccCCCCEEEcCCCCcCCHHHH
Confidence 479999999995 54 3555789999999999999977654332221100 0246899999999998887544
Q ss_pred ccccccccccCcccceeeeccCcCCCC
Q 002187 885 VTAVKGEIRIMPRLSSLSIVYCPKLKA 911 (955)
Q Consensus 885 ~~~~~~~~~~~~~L~~L~i~~c~~l~~ 911 (955)
. .+..+++|++|+|++|+.++.
T Consensus 133 ~-----~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 I-----ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-----HGGGCTTCCEEEEESCTTCCC
T ss_pred H-----HHhcCCCCCEEECCCCCCCCc
Confidence 3 356799999999999998875
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=8.2e-05 Score=80.75 Aligned_cols=175 Identities=9% Similarity=0.058 Sum_probs=103.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeCCcccHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVSELFDEFRIARAI 255 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 255 (955)
.+++|.+..++.+...+... +...+.++|+.|+||||+|+.+++... ...+. ...-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH-------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH-------
Confidence 46889988888888888532 233388999999999999999988421 11111 1222333322121
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHHh------cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChh-HHHh
Q 002187 256 IEALTGSASNFGEFQSLMQHIQECV------QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKET-VACI 328 (955)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~ 328 (955)
+.+...+.... .+.+-++|+|++..-.....+.+...+.......++|++|.... +...
T Consensus 91 --------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 91 --------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp --------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred --------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222222211 23467899999965444445556665554445667777775432 2221
Q ss_pred -hcCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHH
Q 002187 329 -MGSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAA 383 (955)
Q Consensus 329 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 383 (955)
......+.+.+++.++..+.+.+.+-..+-.. . .+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i-~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL-S---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB-C---HHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHH
Confidence 12245789999999999888877653222111 1 345677888888887644
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=2e-05 Score=77.06 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=75.7
Q ss_pred ccCCCceEEEecCC-Cchh-hHHHHHHHhcCCCcccEEEcCCCCccc-----ccccccCCCCcceEEeecCCCccc----
Q 002187 560 DNVKGLRSLLVKSD-EYSW-SIEVLRQLFDKLTCLRTLKLDGSVIIE-----IPTNIEKLLHLKYLNLSCQMEIER---- 628 (955)
Q Consensus 560 ~~~~~Lr~L~l~~~-~~~~-~~~~l~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~~i~~---- 628 (955)
...++|++|.+.++ .... ....+...+...+.|++|+|++|.+.. +...+...++|++|+|++|. ++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 36778888888877 5422 122244557778888888888888753 34556666788888888887 653
Q ss_pred -cchhhcCCCCCCEEee--CCCCCccc-----cCccccCCCCCcEeeCCCC
Q 002187 629 -LPETLCELYNLERLNV--DSCSNLRE-----LPQGIGKLRKLMHLENDQT 671 (955)
Q Consensus 629 -LP~~i~~L~~Lq~LdL--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~ 671 (955)
+...+...++|++|+| ++|. +.. +...+...++|++|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5566777788888888 6666 443 3344556678888888777
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=1e-05 Score=83.31 Aligned_cols=83 Identities=24% Similarity=0.299 Sum_probs=58.5
Q ss_pred HHHhcCCCcccEEEcCCCCcccc---cccccCCCCcceEEeecCCCccccchhhcCCC--CCCEEeeCCCCCccccCc--
Q 002187 583 RQLFDKLTCLRTLKLDGSVIIEI---PTNIEKLLHLKYLNLSCQMEIERLPETLCELY--NLERLNVDSCSNLRELPQ-- 655 (955)
Q Consensus 583 ~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~--~Lq~LdL~~~~~l~~lp~-- 655 (955)
.....+++.|++|+|++|.+..+ |..++.+++|++|+|++|. ++.+. .+..+. +|++|+|++|..-..+|.
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcch
Confidence 33346788899999999887664 3556788888999998888 77663 345555 888888888873333442
Q ss_pred -----cccCCCCCcEee
Q 002187 656 -----GIGKLRKLMHLE 667 (955)
Q Consensus 656 -----~i~~L~~L~~L~ 667 (955)
.+..+++|+.|+
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 245677787775
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.83 E-value=0.00037 Score=74.84 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=103.4
Q ss_pred CCccccchhHHHHHHHHHhcC---C---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNRLLCE---S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~---~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+..++.+.+.+... . .......+-|.++|.+|+|||++|+.+++. ....| +.|+++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~~----- 86 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSD----- 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHHH-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchHH-----
Confidence 357999999999998877311 0 001223457899999999999999999983 33222 2333211
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHH-HHHhcCceEEEEEeCCCCcccc-------C----hhhHHhhcc---CCCCCc
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHI-QECVQRKKFLLVLDDVWNEDYC-------K----WEPFYHCLK---DGLHES 314 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdvw~~~~~-------~----~~~l~~~l~---~~~~gs 314 (955)
+ .... ....+.....+ ...-..+..+|+||++..-... . ...+...+. ....+.
T Consensus 87 -l--------~~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 -L--------VSKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp -H--------HTTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred -H--------hhcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 1100 01112222222 2223456789999999642110 0 222333322 233456
Q ss_pred EEEEecCChhH-HHhh--cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC-hHHHHHHH
Q 002187 315 KILITTRKETV-ACIM--GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL-PLAAKTIA 387 (955)
Q Consensus 315 ~iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 387 (955)
.||.||..... ...+ .-...+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66767765321 1111 12356788999999999999887743221111 23456788888774 44454444
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.83 E-value=1.9e-05 Score=78.59 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS 264 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 264 (955)
.++.+.+++..... ......+.|+|.+|+|||+||+.+++. .......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555566543321 112257899999999999999999984 33334456677553 333333332211
Q ss_pred CCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhh--HHh-hccCC-CCCcEEEEecCC
Q 002187 265 NFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEP--FYH-CLKDG-LHESKILITTRK 322 (955)
Q Consensus 265 ~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 322 (955)
.........+. + .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11223322222 2 2399999997644444432 222 22211 234568888875
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=6.8e-06 Score=89.49 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=56.8
Q ss_pred cCCCceEEEecCCCc-----hhhH-HHHHHHhcCCCcccEEEcCCCCcccccccccCCCCcceEEeecCCCccc-cchhh
Q 002187 561 NVKGLRSLLVKSDEY-----SWSI-EVLRQLFDKLTCLRTLKLDGSVIIEIPTNIEKLLHLKYLNLSCQMEIER-LPETL 633 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~-----~~~~-~~l~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~L~~Lr~L~L~~~~~i~~-LP~~i 633 (955)
.+++|++|.+..... ++.. ..+..++..+++|+.|.|+++.-..++. +. +++|++|+|..|. +.. -...+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGG-LPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSB-CCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCC-CChHHHHHH
Confidence 567888887754321 0000 0123446677778888887764223443 33 6777788777665 431 11223
Q ss_pred c--CCCCCCEEeeCCCCC-------ccccCccc--cCCCCCcEeeCCCC
Q 002187 634 C--ELYNLERLNVDSCSN-------LRELPQGI--GKLRKLMHLENDQT 671 (955)
Q Consensus 634 ~--~L~~Lq~LdL~~~~~-------l~~lp~~i--~~L~~L~~L~l~~~ 671 (955)
+ ++++|++|+|+.+.. +..+...+ ..+++|++|.+.+|
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2 677777777753210 11121112 23567777777665
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.82 E-value=0.00062 Score=72.91 Aligned_cols=189 Identities=17% Similarity=0.109 Sum_probs=101.9
Q ss_pred CccccchhHHHHHHHHHhcC----C--CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCE----S--SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.+..++.+.+.+..+ . .......+-|.++|++|+|||+||+.+++... ... .+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHH----
Confidence 57899998888887766311 0 00112346788999999999999999998320 111 2233333211
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcccc------C-h----hhHHhhccC---CCCCcEE
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYC------K-W----EPFYHCLKD---GLHESKI 316 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~------~-~----~~l~~~l~~---~~~gs~i 316 (955)
....+ .....+...+...-..++.+|+||++..-... . . ..+...+.. ...+..|
T Consensus 84 ----------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 00001 11122222222223467789999999642110 0 1 112222221 2344556
Q ss_pred EEecCChh-HHHhh--cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC-hHHHHHHHH
Q 002187 317 LITTRKET-VACIM--GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL-PLAAKTIAC 388 (955)
Q Consensus 317 ivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~~ 388 (955)
|.||.... +...+ .-...+.++..+.++..+++...+....... -......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL----TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC----CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66665432 11111 2235788899999999999988763221111 123467788888887 444555543
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.80 E-value=0.00021 Score=77.95 Aligned_cols=187 Identities=14% Similarity=0.080 Sum_probs=102.4
Q ss_pred CccccchhHHHHHHHHHhcC----CC--CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCE----SS--KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.+..++.+.+.+... .- ......+.|.|+|.+|+|||++|+.+++. .... .+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 46999999999988877421 00 00123457899999999999999999883 2222 234444432110
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHH-HHHHhcCceEEEEEeCCCCccc-----------cChhhHHhhccCC----CCCc
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQH-IQECVQRKKFLLVLDDVWNEDY-----------CKWEPFYHCLKDG----LHES 314 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~~----~~gs 314 (955)
. .......... +...-..++.+|+||++..-.. .....+...+... ..+.
T Consensus 157 ------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 157 ------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp ------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred ------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 0011111122 2222235678999999943110 1122333333321 2344
Q ss_pred EEEEecCCh-hHHHhh--cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC-ChHHHHHHHH
Q 002187 315 KILITTRKE-TVACIM--GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG-LPLAAKTIAC 388 (955)
Q Consensus 315 ~iivTtr~~-~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~~~~ 388 (955)
.||.||... .+...+ .....+.+...+.++..+++...+....... -.+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL----SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc----cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566666543 222111 1134678999999999998887663321111 12456778888888 5555655543
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.78 E-value=0.00031 Score=76.47 Aligned_cols=187 Identities=16% Similarity=0.098 Sum_probs=100.2
Q ss_pred CccccchhHHHHHHHHHhcC----C--CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCE----S--SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.+..++.|.+.+..+ . .......+-|.++|.+|+|||+||+.+++. ....| +.+.++ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 47999999999988876321 0 001122345889999999999999999984 32222 223222 1
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcccc-----------ChhhHHhhcc---CCCCCcEE
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYC-----------KWEPFYHCLK---DGLHESKI 316 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-----------~~~~l~~~l~---~~~~gs~i 316 (955)
+. ....+ .....+...+...-..+..+|+||++..-... ....+...+. ....+..|
T Consensus 120 l~--------~~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV--------SKWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH--------SCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh--------hhhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 11101 11112222222233457889999999642211 0122322222 12345566
Q ss_pred EEecCChh-HHHhh--cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC-hHHHHHHH
Q 002187 317 LITTRKET-VACIM--GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL-PLAAKTIA 387 (955)
Q Consensus 317 ivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 387 (955)
|.||.... +...+ .....+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776432 11111 22457789999999999999887643211111 23456788888874 44454444
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=5.6e-05 Score=73.60 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC
Q 002187 182 REKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG 261 (955)
Q Consensus 182 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 261 (955)
....++.+.+++..-.. ..-..+.|+|..|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 34445555555533221 123578999999999999999999843212222 233443 34444444444432
Q ss_pred CCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChh--hHHhhccCC-CCCcEEEEecCC
Q 002187 262 SASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWE--PFYHCLKDG-LHESKILITTRK 322 (955)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 322 (955)
... ...... +. +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 89 ~~~-----~~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD-----TKFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC-----SHHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH-----HHHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 211 122222 22 4568999999743333343 233333221 246778888864
No 200
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=0.00012 Score=77.46 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=94.1
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchh-hhccCCceEEEEeCC-cccHHHHHHHHHHH
Q 002187 181 GREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVD-VKKKFEKRMWICVSE-LFDEFRIARAIIEA 258 (955)
Q Consensus 181 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~ 258 (955)
|-++.++.+.+.+... +.....++|+.|+||||+|+.+.+... .........++..+. ...+.. .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3445566777776432 356888999999999999999987311 111122345555443 223222 2334444
Q ss_pred HcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC-hhHHHhhcCcceEeC
Q 002187 259 LTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK-ETVACIMGSTNIISI 337 (955)
Q Consensus 259 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~l 337 (955)
+.... ..+++-++|+|++..-.....+.+...+....+.+.+|++|.+ ..+...+..- .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 43221 1245678999999776556677788888776667887777654 3444444444 9999
Q ss_pred CCCChhhHHHHhHhhh
Q 002187 338 NVLSEMGCWLVFEPLA 353 (955)
Q Consensus 338 ~~L~~~~~~~lf~~~~ 353 (955)
+++++++....+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988765
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=0.00014 Score=80.73 Aligned_cols=313 Identities=10% Similarity=0.083 Sum_probs=158.8
Q ss_pred hhhccCC-CceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCC---ccccc-ccccCCCCcceEEeecCCCccccch
Q 002187 557 SIWDNVK-GLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSV---IIEIP-TNIEKLLHLKYLNLSCQMEIERLPE 631 (955)
Q Consensus 557 ~~~~~~~-~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~---~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~ 631 (955)
..+..+. .|+++.+...- ..+ -...|.+|.+|+.+.+..+. ++.+. ..|.++.+|+.+.+..+ ++.++.
T Consensus 57 ~aF~~~~~~L~sI~iP~sv-t~I---g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~ 130 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTV-TEI---GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDS 130 (394)
T ss_dssp TTTTTCCSCCCEEEECTTC-CEE---CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECT
T ss_pred hhccCCCCcCEEEEECCCe-eEE---hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehh
Confidence 3343553 47777775431 111 12347888888888887653 55553 35667777777766543 555553
Q ss_pred -hhcCCCCCCEEeeCCCCCccccCc-cccCCCCCcEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccc
Q 002187 632 -TLCELYNLERLNVDSCSNLRELPQ-GIGKLRKLMHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLK 709 (955)
Q Consensus 632 -~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~ 709 (955)
.+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+........+|+.+.+......- ....+..+.
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i-~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRI-GTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEE-CTTTTTTCT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCccccc-ccchhhhcc
Confidence 4677778888887643 344433 3566777777777543 34444333333445444321100000 011111111
Q ss_pred cCCCCCCceEeCCC--CCCCH-------hhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCC
Q 002187 710 KLNLLRQCRIRGLG--DFSDV-------GEARRAELEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPP 780 (955)
Q Consensus 710 ~L~~L~~l~i~~~~--~~~~~-------~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 780 (955)
. +......... ..... .............+..+.+... +. .--...+..+
T Consensus 206 ~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-----------------~i~~~aF~~c 264 (394)
T 4gt6_A 206 A---LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-----------------RIETHAFDSC 264 (394)
T ss_dssp T---CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-----------------EECTTTTTTC
T ss_pred c---cceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-----------------Ecccceeeec
Confidence 1 1111111000 00000 0000000001112222222100 00 0001256667
Q ss_pred CCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCCCCCcCCC--CCCCCCcceeeecCCCCceEeCccccCCccCCC
Q 002187 781 PNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTD 858 (955)
Q Consensus 781 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~ 858 (955)
.+|+.+.+.+... . +....+.++++|+.+.+.. .++.++. +..+.+|+.+.|.. +++.++...+.
T Consensus 265 ~~L~~i~lp~~~~-~--I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~------ 331 (394)
T 4gt6_A 265 AYLASVKMPDSVV-S--IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA------ 331 (394)
T ss_dssp SSCCEEECCTTCC-E--ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT------
T ss_pred ccccEEecccccc-e--ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh------
Confidence 8888888764332 2 3255667889999998864 4555554 78899999999853 47778766543
Q ss_pred CccccCCCccceeeecccccccccccccccccccccCcccceeeeccCcCCCCCCCCCCCCCCcCeEEEec
Q 002187 859 GSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFS 929 (955)
Q Consensus 859 ~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~l~~L~~L~l~~ 929 (955)
++.+|+.+.|-. +++.+.. ..+..|++|+.+++.++... + ..+..+.+|+.|.+..
T Consensus 332 -----~C~~L~~i~ip~--sv~~I~~-----~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 332 -----GCEQLERIAIPS--SVTKIPE-----SAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp -----TCTTCCEEEECT--TCCBCCG-----GGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC-------
T ss_pred -----CCCCCCEEEECc--ccCEEhH-----hHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCC
Confidence 678899998854 3444322 25778999999999876421 1 3455567788777653
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.71 E-value=0.00022 Score=76.34 Aligned_cols=136 Identities=15% Similarity=0.260 Sum_probs=74.9
Q ss_pred ccccchhHHHHHHHHHhcCC---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCES---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.++|.+..++.+...+.... .........+.++|.+|+|||++|+.+++. ....-...+.+.++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-HHH
Confidence 57899999888888776431 101223468999999999999999999983 322222345666554333221 111
Q ss_pred HHHHHcCCCC--CCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecC
Q 002187 255 IIEALTGSAS--NFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTR 321 (955)
Q Consensus 255 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 321 (955)
-++.... .......+...+. ....-+|+||++..........+...+..+. ....||.||.
T Consensus 95 ---l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 ---LIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp ---HHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred ---hcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1221111 1111112222222 2344699999997655444555655553321 2344777776
Q ss_pred C
Q 002187 322 K 322 (955)
Q Consensus 322 ~ 322 (955)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.69 E-value=0.00071 Score=75.04 Aligned_cols=299 Identities=11% Similarity=0.099 Sum_probs=168.8
Q ss_pred hcCCC-cccEEEcCCCCccccc-ccccCCCCcceEEeecCC--Cccccch-hhcCCCCCCEEeeCCCCCccccCc-cccC
Q 002187 586 FDKLT-CLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQM--EIERLPE-TLCELYNLERLNVDSCSNLRELPQ-GIGK 659 (955)
Q Consensus 586 ~~~l~-~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~--~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~-~i~~ 659 (955)
|.+++ .|+.+.+-.+ ++.+. ..|.++.+|+.+.+..+. .++.++. .+..+.+|+.+.+..+ +..++. .+..
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhh
Confidence 77775 5999998654 55553 568899999999998652 3666663 5778889998887653 555554 4678
Q ss_pred CCCCcEeeCCCCCCCccccc-CCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCHhhhHHhhccC
Q 002187 660 LRKLMHLENDQTDSLRYLPV-GIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDVGEARRAELEK 738 (955)
Q Consensus 660 L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~l~~ 738 (955)
+.+|+.+.+..+ +..++. .+..+.+|+.+.+...-..- ....+.. ..|..+.+..- +.. .....+..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~~~~I-~~~aF~~----~~l~~i~ip~~--~~~---i~~~af~~ 203 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDSVTAI-EERAFTG----TALTQIHIPAK--VTR---IGTNAFSE 203 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEE-CTTTTTT----CCCSEEEECTT--CCE---ECTTTTTT
T ss_pred hcccccccccce--eeeecccceecccccccccccceeeEe-ccccccc----cceeEEEECCc--ccc---cccchhhh
Confidence 899999998654 344443 35666777765442110000 0111111 22333333221 110 11123445
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEeCCC
Q 002187 739 KKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLRWCS 818 (955)
Q Consensus 739 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 818 (955)
+.++....................... .............+..+.+... ... +....+..+.+|+.+.+.+.
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ip~~-v~~--i~~~aF~~c~~L~~i~lp~~- 275 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSAN----GDYALIRYPSQREDPAFKIPNG-VAR--IETHAFDSCAYLASVKMPDS- 275 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTT----SCEEEEECCTTCCCSEEECCTT-EEE--ECTTTTTTCSSCCEEECCTT-
T ss_pred ccccceecccccccccccceeeccccc----ccccccccccccccceEEcCCc-ceE--cccceeeecccccEEecccc-
Confidence 556666554433211110000000000 0000001111223333333211 111 11445668899999998764
Q ss_pred CCCcCC--CCCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccccCc
Q 002187 819 NCEHLP--PLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIRIMP 896 (955)
Q Consensus 819 ~~~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~ 896 (955)
...+. .+..+++|+.+.+. ..++.++...+. ++++|+.+.|.. +++.+.. ..+..|.
T Consensus 276 -~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~-----------~c~~L~~i~lp~--~v~~I~~-----~aF~~C~ 334 (394)
T 4gt6_A 276 -VVSIGTGAFMNCPALQDIEFS--SRITELPESVFA-----------GCISLKSIDIPE--GITQILD-----DAFAGCE 334 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTT-----------TCTTCCEEECCT--TCCEECT-----TTTTTCT
T ss_pred -cceecCcccccccccccccCC--CcccccCceeec-----------CCCCcCEEEeCC--cccEehH-----hHhhCCC
Confidence 22333 37789999999984 347777766543 678999998864 3443322 2577899
Q ss_pred ccceeeeccCcCCCCCCC-CCCCCCCcCeEEEecC
Q 002187 897 RLSSLSIVYCPKLKALPD-HLLQKTTLQRLSIFSC 930 (955)
Q Consensus 897 ~L~~L~i~~c~~l~~lp~-~~~~l~~L~~L~l~~c 930 (955)
+|+.+.|-.. ++.++. .+.+|++|+.+.+.+.
T Consensus 335 ~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 9999999653 777764 5788999999999865
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.67 E-value=0.0011 Score=70.30 Aligned_cols=186 Identities=17% Similarity=0.132 Sum_probs=99.1
Q ss_pred CccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.+..++.+.+.+..+.. .-......+.|+|.+|+||||+|+.+++. .... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 5799999999998887743100 00113457899999999999999999983 3222 23344433211
Q ss_pred HHHHHHHHHcCCCCCCCChHHHH-HHHHHHhcCceEEEEEeCCCCcccc-------Chh----hHHhhc---cCC--CCC
Q 002187 251 IARAIIEALTGSASNFGEFQSLM-QHIQECVQRKKFLLVLDDVWNEDYC-------KWE----PFYHCL---KDG--LHE 313 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdvw~~~~~-------~~~----~l~~~l---~~~--~~g 313 (955)
.. ..+..... ..+......++.+|+||++..-... .-. .+...+ +.. +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 01112222 2222233456789999999542110 001 122221 111 134
Q ss_pred cEEEEecCChh-HHHhh--cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHH
Q 002187 314 SKILITTRKET-VACIM--GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIA 387 (955)
Q Consensus 314 s~iivTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 387 (955)
..||.||.... +...+ .....+.++..+.++...++...+....... -.+....|++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL----DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55677776532 11111 1234677888888888888877653221111 12346678888888775 444443
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.66 E-value=0.00059 Score=72.42 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=99.2
Q ss_pred CccccchhHHHHHHHHHhcCC-------CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCES-------SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.+++|.+..++.+.+.+...- .-+-...+.|.|+|.+|+|||+||+.+++. .... ++.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 469999998888887764210 000123457899999999999999999983 3222 22322 12
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc----------cC----hhhHHhhccC--CCCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY----------CK----WEPFYHCLKD--GLHE 313 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----------~~----~~~l~~~l~~--~~~g 313 (955)
.+ .....+.. ...+...+.........+|+||++..-.. .. ...+...+.. ...+
T Consensus 84 ~l----~~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 EL----LTMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HH----HHHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HH----HhhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 22 22222211 12233333434445678999999963110 00 1333333322 2235
Q ss_pred cEEEEecCChh-HHHh-hc---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH
Q 002187 314 SKILITTRKET-VACI-MG---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL 381 (955)
Q Consensus 314 s~iivTtr~~~-v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 381 (955)
..||.||.... +... .. -...+.++..+.++-.+++......... ....++ ..+++.+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCH
Confidence 66777776543 2221 12 2357889999999988988776532211 112222 345566777654
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=2.4e-05 Score=76.55 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCCcccEEEcCCC-Cccc-----ccccccCCCCcceEEeecCCCccc-----cchhhcCCCCCCEEeeCCC
Q 002187 579 IEVLRQLFDKLTCLRTLKLDGS-VIIE-----IPTNIEKLLHLKYLNLSCQMEIER-----LPETLCELYNLERLNVDSC 647 (955)
Q Consensus 579 ~~~l~~~~~~l~~Lr~L~L~~~-~~~~-----lp~~i~~L~~Lr~L~L~~~~~i~~-----LP~~i~~L~~Lq~LdL~~~ 647 (955)
...+...+...+.|++|+|++| .+.. +...+...++|++|+|++|. +.. +...+...++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4446667899999999999999 7753 55667788999999999998 753 5566777889999999999
Q ss_pred CCccc-----cCccccCCCCCcEeeC--CCCCCCcc-----cccCCCCCCCCCccceeEe
Q 002187 648 SNLRE-----LPQGIGKLRKLMHLEN--DQTDSLRY-----LPVGIGELISLRRVSKLVV 695 (955)
Q Consensus 648 ~~l~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----~p~~i~~l~~L~~L~~~~~ 695 (955)
. +.. +...+...++|++|++ ++|. +.. +...+...++|+.|++..+
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 8 654 5566778889999999 6663 221 2223344456666665433
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.59 E-value=0.00017 Score=81.59 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=79.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC------Cc-eEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF------EK-RMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~vs~~~~~~ 249 (955)
+.++||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++. +...+ +. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 469999999999999996532 224679999999999999999983 32211 11 1222222
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHH--
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVAC-- 327 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-- 327 (955)
....+. -... +...+...-..++.+|++|. ..+....+...+..+ .-++|.+|.......
T Consensus 246 -------~~~~g~--~e~~---~~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDR---LKKVMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHH---HHHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 000000 0111 22223333345678999992 112222233333322 345666665443111
Q ss_pred -----hhcCcceEeCCCCChhhHHHHhHhhh
Q 002187 328 -----IMGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 328 -----~~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
...-..++.+++.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11223579999999999999998754
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.56 E-value=0.0005 Score=77.75 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=100.9
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
..++|.+..++++.+++..... -+.....-|.|+|.+|+|||++|+.+++. .... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 4689999999998887753200 00123446889999999999999999873 3222 23333221
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc-----------cChhhHHhhccC--CCCCcEE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY-----------CKWEPFYHCLKD--GLHESKI 316 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~--~~~gs~i 316 (955)
+. .... ......+...+.....+++.+|+||++..-.. .....+...+.. ...+..|
T Consensus 274 -----l~----~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IM----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HH----TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hh----hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 1100 01112233334444456778999999942110 111223333332 2234566
Q ss_pred EEecCChh-HHHhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC-hHHHHHH
Q 002187 317 LITTRKET-VACIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL-PLAAKTI 386 (955)
Q Consensus 317 ivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~ 386 (955)
|.||.... +...+ .....+.+...+.++-.+++..++.... .....+ ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-Ccchhh----HHHHHHHccCCcHHHHHHH
Confidence 66776542 22222 1234688999999999999988763221 111222 24566677664 4444433
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.56 E-value=4.3e-05 Score=71.19 Aligned_cols=110 Identities=10% Similarity=0.059 Sum_probs=61.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIE 257 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 257 (955)
.++|++..++++.+.+..-.. ...-|.|+|..|+|||++|+.+++... ..+.++++.. ....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh------
Confidence 588999988888887753221 112477999999999999999998422 2222322221 1111
Q ss_pred HHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCC-CCCcEEEEecCC
Q 002187 258 ALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDG-LHESKILITTRK 322 (955)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 322 (955)
...+.+. .+.-.|+||++..-.......+...+..+ ..+.+||.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 12347899999765444444455555433 345678887753
No 210
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.55 E-value=0.0011 Score=73.18 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=98.9
Q ss_pred CCccccchhHHHHHHHHHhcCCC------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+..++.+.+++..... ......+-|.|+|.+|+|||++|+.+++. .... .+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc-
Confidence 45799999999999888732110 00112457899999999999999999873 2222 233333322110
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc-------ccChh----hHHhhcc---C-CCCCc
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED-------YCKWE----PFYHCLK---D-GLHES 314 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-------~~~~~----~l~~~l~---~-~~~gs 314 (955)
.. + .....+...+...-.....+|+||++..-. ..... .+...+. . .....
T Consensus 188 ---------~~----g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 ---------YV----G-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred ---------cc----c-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 00 0 011112222222223456799999995320 00011 2222221 1 12234
Q ss_pred EEEEecCChh-HHHhh-cC-cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChH-HHHHHH
Q 002187 315 KILITTRKET-VACIM-GS-TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPL-AAKTIA 387 (955)
Q Consensus 315 ~iivTtr~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~~~ 387 (955)
.||.||.... +...+ .- ...+.+...+.++..+++...+....... ..+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666665422 21111 12 24688999999999999987764322211 12356778888887544 554443
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00024 Score=87.00 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=80.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc---cC-C-ceEEEEeCCcccHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK---KF-E-KRMWICVSELFDEFRI 251 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~-~~~wv~vs~~~~~~~~ 251 (955)
..++||+++++.+++.|.... ..-+.++|.+|+||||+|+.+++...-.. .. . ..++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 468999999999999996532 22468999999999999999998421110 01 1 233343322100
Q ss_pred HHHHHHHHcCCCCCCCChHH-HHHHHHHHhc-CceEEEEEeCCCCcc--------ccChhhHHhhccCCCCCcEEEEecC
Q 002187 252 ARAIIEALTGSASNFGEFQS-LMQHIQECVQ-RKKFLLVLDDVWNED--------YCKWEPFYHCLKDGLHESKILITTR 321 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~-~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 321 (955)
+ .....+.+. +...+...-. +++.+|++|++..-. .+....+...+..+ +-.+|.+|.
T Consensus 240 ---------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 0 000112222 2222222222 367899999996421 11112233344332 334555554
Q ss_pred ChhHH-----Hhh-cCcceEeCCCCChhhHHHHhHhh
Q 002187 322 KETVA-----CIM-GSTNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 322 ~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 352 (955)
..... ..+ .-...+.+++.+.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43321 111 22346899999999999988643
No 212
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.52 E-value=0.0014 Score=73.49 Aligned_cols=189 Identities=17% Similarity=0.117 Sum_probs=100.0
Q ss_pred CCccccchhHHHHHHHHHhcC----CC--CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNRLLCE----SS--KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+..++.+.+.+..+ .- ......+-|.++|++|+|||+||+.+++. . ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH---
Confidence 357999999999888876311 00 01123467889999999999999999983 2 112234333321
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc-------cChhh----HHhhccC---CCCCcE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY-------CKWEP----FYHCLKD---GLHESK 315 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-------~~~~~----l~~~l~~---~~~gs~ 315 (955)
+ .....+. .......+ +...-..++.+|+||++..-.. ..... +...+.. ...+..
T Consensus 204 -l----~~~~~g~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -L----VSKWLGE--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -H----Hhhhcch--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1 1111111 11112222 2222245678999999964210 01112 2222221 134566
Q ss_pred EEEecCChhH-HHhh--cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC-hHHHHHHH
Q 002187 316 ILITTRKETV-ACIM--GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL-PLAAKTIA 387 (955)
Q Consensus 316 iivTtr~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plai~~~~ 387 (955)
||.||..... ...+ .....+.++..+.++...+|...+........ ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 7777765321 1111 12346788888888888888887632211111 23456788888884 44444443
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.48 E-value=0.00026 Score=75.11 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=82.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
+.++|+...+.++.+.+..... ....|.|+|..|+|||++|+.+++.. ...-...+.|+++.... .++ .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~v~~~~~~~--~l~---~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACS--ARSDRPLVTLNCAALNE--SLL---E 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCEEECSSCCH--HHH---H
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhC--cccCCCeEEEeCCCCCh--HHH---H
Confidence 4689999999998888764322 22357799999999999999998732 11111234555554322 221 1
Q ss_pred HHHcCCCCCC-CC-hHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecCCh
Q 002187 257 EALTGSASNF-GE-FQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTRKE 323 (955)
Q Consensus 257 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 323 (955)
..+.+...+. .. .......+... ..-.|+||++..........+...+.... ...+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 2232221110 00 00000011111 12468999997654433444555554331 346788887653
Q ss_pred h---HHH---------hhcCcceEeCCCCC--hhhHHHHhH
Q 002187 324 T---VAC---------IMGSTNIISINVLS--EMGCWLVFE 350 (955)
Q Consensus 324 ~---v~~---------~~~~~~~~~l~~L~--~~~~~~lf~ 350 (955)
- +.. .+. ...+.+++|. .+|...++.
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 1 111 111 2346788887 455554443
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=2.2e-05 Score=80.79 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=68.8
Q ss_pred EEcCCCCccccccc----ccCCCCcceEEeecCCCcccc---chhhcCCCCCCEEeeCCCCCccccCccccCCC--CCcE
Q 002187 595 LKLDGSVIIEIPTN----IEKLLHLKYLNLSCQMEIERL---PETLCELYNLERLNVDSCSNLRELPQGIGKLR--KLMH 665 (955)
Q Consensus 595 L~L~~~~~~~lp~~----i~~L~~Lr~L~L~~~~~i~~L---P~~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~--~L~~ 665 (955)
++++.|....++.. ..++++|+.|+|++|. ++.+ |..+.++++|++|+|++|. +..+ ..+..+. +|++
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcce
Confidence 45555544333321 2578999999999998 7754 4667899999999999998 7766 3455555 9999
Q ss_pred eeCCCCCCCccccc-------CCCCCCCCCccceeEe
Q 002187 666 LENDQTDSLRYLPV-------GIGELISLRRVSKLVV 695 (955)
Q Consensus 666 L~l~~~~~l~~~p~-------~i~~l~~L~~L~~~~~ 695 (955)
|++.+|.....+|. .+..+++|+.|+...+
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 99999965444442 2566777777765433
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.48 E-value=0.00019 Score=74.74 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=33.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|.+..+.++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999998888877654221 1235779999999999999999984
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.41 E-value=0.001 Score=70.94 Aligned_cols=156 Identities=12% Similarity=0.154 Sum_probs=84.8
Q ss_pred CccccchhHHHHHHHHHhcC--CC------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-
Q 002187 177 SEIVGREKEKKELVNRLLCE--SS------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD- 247 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~--~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 247 (955)
..++|.+..++.+...+... .. ........+.++|.+|+|||++|+.+++. ... ..+.+.++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEcchhcccC
Confidence 46899999999988877541 00 00012346789999999999999999983 322 233455443221
Q ss_pred ------HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccC------------hhhHHhhccC
Q 002187 248 ------EFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCK------------WEPFYHCLKD 309 (955)
Q Consensus 248 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~------------~~~l~~~l~~ 309 (955)
....+..+..... + .+.. .+.+.+|+||++..-.... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~----~---------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAG----G---------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTT----T---------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhh----H---------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 1112222221110 0 0000 1235799999997543332 3444444433
Q ss_pred C----------CCCcEEEEecC----Ch-hHHH-hhcC-cceEeCCCCChhhHHHHhHhh
Q 002187 310 G----------LHESKILITTR----KE-TVAC-IMGS-TNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 310 ~----------~~gs~iivTtr----~~-~v~~-~~~~-~~~~~l~~L~~~~~~~lf~~~ 352 (955)
. ..+..+|.|+. .. .+.. ..+- ...+.+++++.++..+++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhh
Confidence 2 12455666642 11 1111 1111 246899999999988888753
No 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.35 E-value=0.00097 Score=75.26 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=58.6
Q ss_pred EEEEeCCCCccccChhhHHhhccCCCCCcEEE-Ee---------cC----ChhHH-HhhcCcceEeCCCCChhhHHHHhH
Q 002187 286 LLVLDDVWNEDYCKWEPFYHCLKDGLHESKIL-IT---------TR----KETVA-CIMGSTNIISINVLSEMGCWLVFE 350 (955)
Q Consensus 286 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tr----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf~ 350 (955)
++++|++..-+.+..+.+...+...... .+| .| |. ...+. ...+....+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999776666677777777655444 344 44 32 11111 122334567999999999999998
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHhhc-CCChHHHHHH
Q 002187 351 PLAFSGKSTVERENLEEIGREITRKC-KGLPLAAKTI 386 (955)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPlai~~~ 386 (955)
..+...+.. --.+....|++.+ +|.|-.+..+
T Consensus 377 ~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHH
Confidence 765321111 1134456777777 7877655444
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.0035 Score=64.67 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=93.0
Q ss_pred CCccccchhHHHHHHHHH---hcCCCC---CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNRL---LCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L---~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+..++.+.+.+ .....- +....+-+.|+|.+|+||||+|+.+++. ....| +.+..+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH--
Confidence 357899998777665543 221100 0112335889999999999999999983 32222 3333222110
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcccc--------------ChhhHHhhccC--CCCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYC--------------KWEPFYHCLKD--GLHE 313 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~--------------~~~~l~~~l~~--~~~g 313 (955)
... ......+...+.........++++|++..-... ....+...+.. ...+
T Consensus 84 ------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 ------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 000 011222333334444456789999998421110 01122222221 2334
Q ss_pred cEEEEecCChh-HHHhh-c---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCC-ChHHHH
Q 002187 314 SKILITTRKET-VACIM-G---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKG-LPLAAK 384 (955)
Q Consensus 314 s~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~ 384 (955)
..||.||.... +...+ . -...+.++..+.++-.+++....... ....... ...++..+.| .+--+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHH
Confidence 56777776543 22221 1 13467788888888888877665221 1111111 2346667777 554443
No 219
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0048 Score=66.80 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=97.1
Q ss_pred CccccchhHHHHHHHHHhcC----C---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCE----S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
+++.|-++.+++|.+.+.-+ . .-+-...+-|.++|++|.|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 46889988888777655321 0 001234556889999999999999999993 33333 3344332211
Q ss_pred HHHHHHHHHHcCCCCCCCChHH-HHHHHHHHhcCceEEEEEeCCCCccc--------cC------hhhHHhhccC--CCC
Q 002187 250 RIARAIIEALTGSASNFGEFQS-LMQHIQECVQRKKFLLVLDDVWNEDY--------CK------WEPFYHCLKD--GLH 312 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~~~--------~~------~~~l~~~l~~--~~~ 312 (955)
.. ..+.+. +.......-...+++|++|+++.-.. .. ...+...+.. ...
T Consensus 221 ------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 011111 12222222245689999999964210 00 1122222222 234
Q ss_pred CcEEEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 313 ESKILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 313 gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
+-.||.||...... ..+ .-+..+.++.-+.++-.++|+.+.-.-. ....-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 45667777654322 221 2356889999899998999977653221 112223 355777777754
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.28 E-value=0.0012 Score=79.91 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=85.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEE-EeCCcccHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWI-CVSELFDEFRI 251 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv-~vs~~~~~~~~ 251 (955)
..++||+.+++.+.+.|... ...-+.++|.+|+|||++|+.+++...-.. .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999999643 233568999999999999999988421111 11223322 11110
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc--------ccChhhHHhhccCCCCCcEEEEecCC
Q 002187 252 ARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED--------YCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
+.. .....+.+.....+.+.+ ..++.+|++|++..-. ..+...+...+.. ..+..+|.+|..
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 000 111122333333333333 3467899999996421 1111111112222 234566666655
Q ss_pred hhHHHhh-------cCcceEeCCCCChhhHHHHhHhhh
Q 002187 323 ETVACIM-------GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 323 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
....... .....+.+++.+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4322111 112368899999999988887643
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.26 E-value=0.00049 Score=83.29 Aligned_cols=155 Identities=15% Similarity=0.248 Sum_probs=88.3
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+...+..... ........+.++|.+|+|||++|+.+++. ....-...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 4689999999888888764321 11223447999999999999999999983 322223345666554321100
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCC-----------CCCcEEEEecCC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDG-----------LHESKILITTRK 322 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 322 (955)
. ....+...++ ....-+|+||++..........+...+..+ ....+||+||..
T Consensus 566 -----------~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -----------T--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------C--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------c--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0 0011111111 123348999999765555555566555432 134688888873
Q ss_pred -----hhH----HHhh-----cC-cceEeCCCCChhhHHHHhHhh
Q 002187 323 -----ETV----ACIM-----GS-TNIISINVLSEMGCWLVFEPL 352 (955)
Q Consensus 323 -----~~v----~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~ 352 (955)
..+ ...+ .- ...+.+.+++.++-..++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 111 1111 11 247788888888877776554
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00018 Score=67.30 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=27.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
..+.|+|..|+|||||++.+++.....+ ...+++....
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG--KNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT--CCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEcHHH
Confidence 3789999999999999999998433211 1256666543
No 223
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.25 E-value=0.0018 Score=69.84 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=94.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
..++|.+..++.+...+..... .+.....+.++|+.|+||||||+.+++. ....|. ....+-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCH--------
Confidence 4688988877777766643210 0123457899999999999999999983 322211 1111110111
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC------------------CCcEEE-
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL------------------HESKIL- 317 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~ii- 317 (955)
.++...+ ..+ .++-++++|++..-.....+.+...+.... +...++
T Consensus 91 -------------~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 91 -------------GDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -------------HHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -------------HHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1111111 112 234477888875432222233322221110 011222
Q ss_pred EecCChhHHHhhcC--cceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 318 ITTRKETVACIMGS--TNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 318 vTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
.|++...+...+.. .-.+.+++.+.++-.+++.+.+...+. .--.+.+..|++.+.|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 34443333222211 235789999999999999887632211 112356888999999999755433
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0062 Score=67.03 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=98.0
Q ss_pred CCccccchhHHHHHHHHHhcC----C---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 176 ESEIVGREKEKKELVNRLLCE----S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
-.++.|-++.+++|.+.+.-+ . .-+-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 356889988888777665321 0 002234567899999999999999999993 33332 3344332211
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHH-HHHhcCceEEEEEeCCCCcc------ccC--------hhhHHhhcc--CCC
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHI-QECVQRKKFLLVLDDVWNED------YCK--------WEPFYHCLK--DGL 311 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdvw~~~------~~~--------~~~l~~~l~--~~~ 311 (955)
. ...+.+.....+ ...-...+++|++|+++.-. ... ...+...+. .+.
T Consensus 254 -------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 011111222222 22224578999999996311 000 112223232 223
Q ss_pred CCcEEEEecCChhHH-Hhh-c---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 312 HESKILITTRKETVA-CIM-G---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 312 ~gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
.+..||.||...... ..+ . -+..+.++.-+.++-.++|+.+...-.. ...-+ ...+++.+.|+-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 455778888664322 221 1 2457888888888888888776533211 12223 355777777754
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.0011 Score=80.31 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=80.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhcc------CCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK------FEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~ 250 (955)
..++||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++. +... .... ++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~-~~~~~~------ 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKR-VMTLDM------ 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCC-EECC--------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCe-EEEecc------
Confidence 469999999999999996532 224779999999999999999884 2111 0111 111111
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHH---
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVAC--- 327 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~--- 327 (955)
+....+ .-...+...+......++.+|++|.- .+....+...+.. ..-++|.||.......
T Consensus 245 ---------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 ---------GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred ---------cccccc-hHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 000000 00112233333344467889999921 1222223333332 2356666665443211
Q ss_pred ----hhcCcceEeCCCCChhhHHHHhHhhh
Q 002187 328 ----IMGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 328 ----~~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
...-...+.++..+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123579999999999999998654
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0039 Score=68.50 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=91.7
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 176 ESEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
-.++.|-++.+++|.+.+.-+-. -+-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 35789999888888776532110 02234567899999999999999999993 33332 3344332111
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCc------cc---c-C----hhhHHhhcc--CCCC
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNE------DY---C-K----WEPFYHCLK--DGLH 312 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~------~~---~-~----~~~l~~~l~--~~~~ 312 (955)
...+ .....+...+...-...+++|++|+++.- .. . . ...+...+. ....
T Consensus 245 -------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 -------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp -------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred -------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 0000 01111222222222456899999998521 00 0 0 112222222 2234
Q ss_pred CcEEEEecCChh-HHHhh-c---CcceEeCCCCChhhH-HHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC
Q 002187 313 ESKILITTRKET-VACIM-G---STNIISINVLSEMGC-WLVFEPLAFSGKSTVERENLEEIGREITRKCKGL 379 (955)
Q Consensus 313 gs~iivTtr~~~-v~~~~-~---~~~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 379 (955)
+-.||.||.... +-..+ . -+..+.+..++..++ ..+|..+.-.- .....-++ ..+++.+.|+
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-SLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-CBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHHCCCC
Confidence 556777776543 22221 1 134677876755544 55665554221 11122233 4566777665
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.07 E-value=0.00051 Score=71.60 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+..++.+.+.+..-..+ +....+-+.|+|.+|+|||++|+.+++. ....| +.+.++.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH--
Confidence 357999998777777655310000 0011223779999999999999999984 33232 1112111100
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc---------------cChhhHHhhccC---CC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY---------------CKWEPFYHCLKD---GL 311 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~---------------~~~~~l~~~l~~---~~ 311 (955)
.+... .......+ +......+..+|+||++..-.. .....+...+.. ..
T Consensus 83 --------~~~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 --------MFVGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------SCSSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hhcch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 00000 11111111 2222234567999999954211 112223333321 11
Q ss_pred CCcEEEEecCChhHH-Hh-hc---CcceEeCCCCChhhHHHHhHhhh
Q 002187 312 HESKILITTRKETVA-CI-MG---STNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 312 ~gs~iivTtr~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
....||.||...... .. .. -...+.++..+.++-.+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 224577777654321 11 11 13467888889999888887765
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.05 E-value=0.006 Score=68.28 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=96.0
Q ss_pred CccccchhHHHHHHHHHh---cCC---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLL---CES---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.++.++++.+.+. .+. .-+..-.+-|.|+|++|+|||+||+.+++. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 468999887666655442 210 000112234789999999999999999983 32222 33443322110
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc--------------cChhhHHhhcc--CCCCCc
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY--------------CKWEPFYHCLK--DGLHES 314 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--------------~~~~~l~~~l~--~~~~gs 314 (955)
..+ .........+.....+.+.+|+||++..-.. .....+...+. ....+.
T Consensus 89 ------------~~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 ------------FVG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------CTT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------Hhc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 000 0112233334444456789999999954211 01122322222 122456
Q ss_pred EEEEecCChhHHH-h-hc---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 315 KILITTRKETVAC-I-MG---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 315 ~iivTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
.||.||....... . .. -...+.++..+.++-.+++..++.... .....+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777777654321 1 11 134788888888888888876653221 111112 344788888876
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.011 Score=64.95 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=96.1
Q ss_pred CccccchhHHHHHHHHHhc----CC---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLC----ES---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.++.|-++.+++|.+.+.- +. .-+-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 4688998888888765421 10 001235667889999999999999999993 33332 334333211
Q ss_pred HHHHHHHHHHcCCCCCCCChHH-HHHHHHHHhcCceEEEEEeCCCCccc------cC--------hhhHHhhccC--CCC
Q 002187 250 RIARAIIEALTGSASNFGEFQS-LMQHIQECVQRKKFLLVLDDVWNEDY------CK--------WEPFYHCLKD--GLH 312 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdvw~~~~------~~--------~~~l~~~l~~--~~~ 312 (955)
... ..+.+. +.......-...+++|++|+++.-.. .. ...+...+.. ...
T Consensus 281 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 110 011111 22222222345789999999863210 00 0112222221 223
Q ss_pred CcEEEEecCChhH-HHhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 313 ESKILITTRKETV-ACIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 313 gs~iivTtr~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
+-.||.||..... -..+ .-...+.++.-+.++-.++|+.+...- .....-+ ...|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~-~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM-SVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS-CBCSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC-CCCCCCC----HHHHHHHCCCCC
Confidence 4456777755332 2221 225678888888888899998765322 1111223 345777777753
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.86 E-value=0.011 Score=64.83 Aligned_cols=78 Identities=8% Similarity=0.106 Sum_probs=36.6
Q ss_pred cCCCceEEEecCCCchhhHHHHHHHhcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccchhhcCCCCC
Q 002187 561 NVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPETLCELYNL 639 (955)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~~i~~L~~L 639 (955)
...+|+++.+...- ..+ -...|.+|.+|+.+.|..+ ++.+. ..|.++ .|..+.+..+ ++.++...-...+|
T Consensus 44 ~~~~i~~v~ip~~v-t~I---g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L 115 (379)
T 4h09_A 44 DRDRISEVRVNSGI-TSI---GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGGCSEEEECTTE-EEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCC
T ss_pred cccCCEEEEeCCCc-cCh---HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCc
Confidence 44556666554321 111 1223666666666666433 44443 234444 4555554422 44554432223356
Q ss_pred CEEeeCC
Q 002187 640 ERLNVDS 646 (955)
Q Consensus 640 q~LdL~~ 646 (955)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 6666654
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.81 E-value=0.0029 Score=72.79 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=78.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+++|-++..+.+.+.+.-..-.......++.++|.+|+||||||+.++.. ....| .-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHH
Confidence 357888887777755443111001114458999999999999999999983 33222 2233333222211111110
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcccc----ChhhHHhhccCCC---------------CCcEEE
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYC----KWEPFYHCLKDGL---------------HESKIL 317 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ii 317 (955)
..++. ....+...+.. .....-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 00110 00111111121 1223348889999653322 1233444332211 234677
Q ss_pred EecCChh-HH-HhhcCcceEeCCCCChhhHHHHhHhhh
Q 002187 318 ITTRKET-VA-CIMGSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 318 vTtr~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
.||.... +. ....-...+.+.+++.++-..++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 7766532 11 111122468899999988888877654
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.77 E-value=0.0028 Score=77.52 Aligned_cols=135 Identities=17% Similarity=0.302 Sum_probs=72.8
Q ss_pred ccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHH
Q 002187 178 EIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARA 254 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 254 (955)
.++|.+..++.+...+..... +.+.....+.|+|..|+|||++|+.+++. ....-...+.++++.......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~---- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA---- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH----
Confidence 579999998888887754321 11223468899999999999999999883 221112234555554322100
Q ss_pred HHHHHcCCCC---CCCChHHHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEec
Q 002187 255 IIEALTGSAS---NFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITT 320 (955)
Q Consensus 255 i~~~l~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 320 (955)
...+.+... +......+...++. ...-+|+||++.....+....+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 001100000 00000112222221 234589999997655555556666665431 245578887
Q ss_pred CC
Q 002187 321 RK 322 (955)
Q Consensus 321 r~ 322 (955)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 233
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0076 Score=66.26 Aligned_cols=177 Identities=18% Similarity=0.194 Sum_probs=94.6
Q ss_pred CccccchhHHHHHHHHHhc----CC---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLC----ES---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.++.|-++.+++|.+.+.. +. ..+-...+-|.++|++|.|||+||+++++. ....| +.|..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 4789999888888766432 11 002234667899999999999999999993 33332 334333211
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHH-HhcCceEEEEEeCCCCc-------ccc---Ch----hhHHhhccC--CCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQE-CVQRKKFLLVLDDVWNE-------DYC---KW----EPFYHCLKD--GLH 312 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~-------~~~---~~----~~l~~~l~~--~~~ 312 (955)
... ..+.+.....+.. .-...+++|++|+++.- ... .. ..+...+.. +..
T Consensus 253 -----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 1111122222222 22346799999998531 000 01 112222322 223
Q ss_pred CcEEEEecCChhHH-Hhh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC
Q 002187 313 ESKILITTRKETVA-CIM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL 379 (955)
Q Consensus 313 gs~iivTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 379 (955)
+-.||.||...... ..+ .-+..+.++.-+.++-.++|+.+.-.-. ....-+ ...|++.+.|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 44566677654322 222 1245788888888888888876553211 111222 34567777664
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.76 E-value=0.00092 Score=69.75 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=46.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEe--CCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICV--SELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (955)
-+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. ...+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 356789999999999999999873 1224567777 332111 01345566666666666
Q ss_pred CceEEEEEeCCC
Q 002187 282 RKKFLLVLDDVW 293 (955)
Q Consensus 282 ~k~~LlVlDdvw 293 (955)
+.+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 656 99999994
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.75 E-value=0.0025 Score=77.14 Aligned_cols=135 Identities=16% Similarity=0.279 Sum_probs=72.6
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIAR 253 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 253 (955)
..++|.+..++.+...+..... +.......+.++|.+|+|||++|+.+++. .. ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 4588999988888877753211 11224457899999999999999999983 32 2234455544322100
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCccccChhhHHhhccCCC-----------CCcEEEEecC
Q 002187 254 AIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGL-----------HESKILITTR 321 (955)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 321 (955)
...+.+..++....++ ...+.+.+ +....+|+||++.....+....+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0001111111110000 01122222 2445799999997655544555555554321 2355777775
Q ss_pred C
Q 002187 322 K 322 (955)
Q Consensus 322 ~ 322 (955)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.73 E-value=0.0013 Score=69.63 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeC
Q 002187 182 REKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS 243 (955)
Q Consensus 182 r~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 243 (955)
+...++.+.+++..... .....+.|+|..|+|||+||+.+++.... ..-..+++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH
Confidence 33445555566654321 12357889999999999999999984321 222345566543
No 237
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.018 Score=62.61 Aligned_cols=177 Identities=20% Similarity=0.173 Sum_probs=94.4
Q ss_pred CccccchhHHHHHHHHHhc----CC---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLC----ES---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
+++.|-++.+++|.+.+.- +. .-+-...+-|.++|++|.|||.||+++++. ....| +.|+.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh---
Confidence 4688898888877766532 11 002234567999999999999999999993 33332 233332211
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHH-HhcCceEEEEEeCCCCcc------cc--C------hhhHHhhcc--CCCC
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQE-CVQRKKFLLVLDDVWNED------YC--K------WEPFYHCLK--DGLH 312 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~------~~--~------~~~l~~~l~--~~~~ 312 (955)
.. ...+.+.....+.. .-...+++|++|+++.-. .. . ...+...+. ....
T Consensus 254 -----------sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------QK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------CS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------hc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 00 01111222222222 223568999999986311 00 0 111222222 2234
Q ss_pred CcEEEEecCChhHH-Hhh-c---CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCC
Q 002187 313 ESKILITTRKETVA-CIM-G---STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGL 379 (955)
Q Consensus 313 gs~iivTtr~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 379 (955)
+-.||.||...... ..+ . -+..+.++.-+.++-.++|+.+.-.- .....-++ ..|++.+.|+
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCC
Confidence 45677777654332 222 1 14467888888888888887765322 11122233 4566677664
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.66 E-value=0.0085 Score=64.43 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=83.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
..++|++..++.+...+.... -+.++|.+|+|||+||+.+.+ ..... ...+.++......++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~g~-- 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLIGT-- 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHHEE--
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcCCc--
Confidence 468999999999888886532 488999999999999999988 33222 223444333333222111
Q ss_pred HHHcCCCCCCCChHHHHHHHHHHhcC--ceEEEEEeCCCCccccChhhHHhhccCC-----------CCCcEEEEecCCh
Q 002187 257 EALTGSASNFGEFQSLMQHIQECVQR--KKFLLVLDDVWNEDYCKWEPFYHCLKDG-----------LHESKILITTRKE 323 (955)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~ 323 (955)
..... ...... .-.+ ...++++|++..........+...+..+ .....||.|+...
T Consensus 92 --~~~~~-~~~~~~--------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 92 --MIYNQ-HKGNFE--------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp --EEEET-TTTEEE--------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred --eeecC-CCCceE--------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000 000000 0001 1258999999764443344444443321 2234566566522
Q ss_pred h------HH-HhhcCcc-eEeCCCCChhhHHHHhHhhhc
Q 002187 324 T------VA-CIMGSTN-IISINVLSEMGCWLVFEPLAF 354 (955)
Q Consensus 324 ~------v~-~~~~~~~-~~~l~~L~~~~~~~lf~~~~~ 354 (955)
. +. ....-.. .+.+++.+.++-.+++.+.+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 11 1112222 588899999998888887764
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.012 Score=61.87 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 240
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0094 Score=59.67 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=50.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC------------CCCCCCChHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG------------SASNFGEFQSL 272 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~~ 272 (955)
.++.|+|.+|+||||||..++. . .-..++|++....++...+.. +.+.++. ......+....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4899999999999999998887 1 124578888776555544433 3322211 11111222334
Q ss_pred HHHHHHHhcCceEEEEEeCCC
Q 002187 273 MQHIQECVQRKKFLLVLDDVW 293 (955)
Q Consensus 273 ~~~l~~~l~~k~~LlVlDdvw 293 (955)
...++..+..+.-+||+|.+-
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHhhcCCCEEEEcCcH
Confidence 445555554456799999874
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.38 E-value=0.018 Score=68.29 Aligned_cols=179 Identities=14% Similarity=0.134 Sum_probs=96.2
Q ss_pred CccccchhHHHHHHHHHh----cCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLL----CESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~----~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.++.|-++.+++|.+.+. .+.- -+....+-|.++|++|.|||+||+++++. ...+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 457888877777766542 2211 12234667899999999999999999994 33332 3443221
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc------ccCh-h----hHHhhccC--CCCCcEE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED------YCKW-E----PFYHCLKD--GLHESKI 316 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------~~~~-~----~l~~~l~~--~~~gs~i 316 (955)
+..... ......+...+....+..+.+|+||+++.-. .... . .+...+.. ...+-.|
T Consensus 274 ---------l~sk~~-gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HHSSCT-THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred ---------hhcccc-hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 111111 1111223333333345678999999996411 0111 1 12222111 1223446
Q ss_pred EEecCCh-hHHHhhc----CcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 317 LITTRKE-TVACIMG----STNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 317 ivTtr~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
|.||... .+-..+. -...+++..-+.++-.++|+.+..... ...+-+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 6666553 2222221 245788998898888888887653211 112223 345777887764
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.094 Score=57.34 Aligned_cols=287 Identities=12% Similarity=0.059 Sum_probs=146.8
Q ss_pred hcCCCcccEEEcCCCCccccc-ccccCCCCcceEEeecCCCccccch-hhcCCCCCCEEeeCCCCCccccCccccCCCCC
Q 002187 586 FDKLTCLRTLKLDGSVIIEIP-TNIEKLLHLKYLNLSCQMEIERLPE-TLCELYNLERLNVDSCSNLRELPQGIGKLRKL 663 (955)
Q Consensus 586 ~~~l~~Lr~L~L~~~~~~~lp-~~i~~L~~Lr~L~L~~~~~i~~LP~-~i~~L~~Lq~LdL~~~~~l~~lp~~i~~L~~L 663 (955)
+....+|+.+.+.. .++.++ ..|.++.+|+.+.|..+ ++.++. .+.++ +|+.+.+-.+ +..++.......+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccceeccCCc
Confidence 45566788888854 456664 45889999999999743 777764 35555 6777777542 56665554344578
Q ss_pred cEeeCCCCCCCcccccCCCCCCCCCccceeEecCccCCccCccccccCCCCCCceEeCCCCCCCH--------hhhHHhh
Q 002187 664 MHLENDQTDSLRYLPVGIGELISLRRVSKLVVGGGYDKACSLGSLKKLNLLRQCRIRGLGDFSDV--------GEARRAE 735 (955)
Q Consensus 664 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~--------~~~~~~~ 735 (955)
+.+.+..+ +..+........+|..+..... ........+ .....+....+......... .......
T Consensus 116 ~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 116 DDFEFPGA--TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIG---YKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp SEEECCTT--CCEECTTTTTTCCCCEEEECTT-CCEECSCTT---TTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred ccccCCCc--cccccccccccceeeeeeccce-eeccccchh---cccccccccccccccceeecccceecccccceecc
Confidence 88888654 3333333222233333221100 000000011 11111221111110000000 0000000
Q ss_pred ccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeecCCCCCCCCChhcccccccEEEEe
Q 002187 736 LEKKKNLIELGLHFDHIRDGDEEQAGRRENEEDEDERLLEALGPPPNLKELRIHEYRGRRNVVPKNWVMSLTNLRVLHLR 815 (955)
Q Consensus 736 l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~ 815 (955)
......+..+.+... . .......+..+.+|+.+.+..+. .. +....+..+.+|+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~----~--------------~~i~~~~f~~~~~l~~i~~~~~~-~~--i~~~~f~~~~~L~~i~lp 248 (379)
T 4h09_A 190 YPAAKTGTEFTIPST----V--------------KTVTAYGFSYGKNLKKITITSGV-TT--LGDGAFYGMKALDEIAIP 248 (379)
T ss_dssp CCTTCCCSEEECCTT----C--------------CEECTTTTTTCSSCSEEECCTTC-CE--ECTTTTTTCSSCCEEEEC
T ss_pred ccccccccccccccc----e--------------eEEeecccccccccceeeeccce-eE--EccccccCCccceEEEcC
Confidence 111111111111100 0 00001133445667777665432 11 224455577888888886
Q ss_pred CCCCCCcCCC--CCCCCCcceeeecCCCCceEeCccccCCccCCCCccccCCCccceeeecccccccccccccccccccc
Q 002187 816 WCSNCEHLPP--LGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELEEWDFVTAVKGEIR 893 (955)
Q Consensus 816 ~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~ 893 (955)
.+ ++.++. +..+.+|+.+.+.. +++.++...+. ++++|+.+.+.+. .++.+.. ..+.
T Consensus 249 ~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~-----------~c~~L~~i~l~~~-~i~~I~~-----~aF~ 307 (379)
T 4h09_A 249 KN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS-----------GCSNLTKVVMDNS-AIETLEP-----RVFM 307 (379)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT-----------TCTTCCEEEECCT-TCCEECT-----TTTT
T ss_pred CC--ccEeCccccceeehhccccccc--cceeccccccc-----------ccccccccccccc-ccceehh-----hhhc
Confidence 54 444433 66788888888743 35566654432 6788998888643 2333322 2567
Q ss_pred cCcccceeeeccCcCCCCCCC-CCCCCCCcCeEEEe
Q 002187 894 IMPRLSSLSIVYCPKLKALPD-HLLQKTTLQRLSIF 928 (955)
Q Consensus 894 ~~~~L~~L~i~~c~~l~~lp~-~~~~l~~L~~L~l~ 928 (955)
.|++|+.+.|... ++.++. .+.+|++|+.+.+.
T Consensus 308 ~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 308 DCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 8899999998643 666654 57788889988874
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.20 E-value=0.016 Score=63.46 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+.++|.+|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999983
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.05 E-value=0.027 Score=54.24 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=64.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC---cccHHHHHHHHHHHHc----CCC--CCCC-------C
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE---LFDEFRIARAIIEALT----GSA--SNFG-------E 268 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~----~~~--~~~~-------~ 268 (955)
..|-|++-.|.||||+|-...- +.-++=-.+.++..-. ......++..+. +. ... .... .
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 3566777777999999976665 3333322344553322 233333333331 10 000 0010 1
Q ss_pred hHHHHHHHHHHhcCceE-EEEEeCCCC---ccccChhhHHhhccCCCCCcEEEEecCCh
Q 002187 269 FQSLMQHIQECVQRKKF-LLVLDDVWN---EDYCKWEPFYHCLKDGLHESKILITTRKE 323 (955)
Q Consensus 269 ~~~~~~~l~~~l~~k~~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 323 (955)
........++.+.+.+| |||||++-. -.....+.+...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12234455566666666 999999822 12345566777777666677899999984
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.02 E-value=0.065 Score=60.31 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=91.9
Q ss_pred CCccccchhHHHHHHHH---HhcCCCC---CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 176 ESEIVGREKEKKELVNR---LLCESSK---EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 176 ~~~~vGr~~~~~~i~~~---L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
-.+++|.+..++++.+. +.....- +..-.+-|.|+|.+|+||||||+.+++. .. ...+.++.+.-...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVEM- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTSS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHHh-
Confidence 45789998776665554 3222100 0011223899999999999999999984 22 12344443321100
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC----ceEEEEEeCCCCccc----------cCh----hhHHhhccCC-
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQR----KKFLLVLDDVWNEDY----------CKW----EPFYHCLKDG- 310 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdvw~~~~----------~~~----~~l~~~l~~~- 310 (955)
........++..++. ...++++|++..-.. +.+ ..+...+..+
T Consensus 104 ------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 104 ------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 011122233444432 347999999953210 111 2233333322
Q ss_pred -CCCcEEEEecCChhHHH-hh----cCcceEeCCCCChhhHHHHhHhhhcCCCCCCCcchHHHHHHHHHhhcCCCh
Q 002187 311 -LHESKILITTRKETVAC-IM----GSTNIISINVLSEMGCWLVFEPLAFSGKSTVERENLEEIGREITRKCKGLP 380 (955)
Q Consensus 311 -~~gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 380 (955)
..+..|+.||....+.. .+ .....+.++..+.++-.+++..++-.. ......+ ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 23445666776654422 11 124578888888888888887665221 1111111 344677777765
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.98 E-value=0.0045 Score=61.69 Aligned_cols=111 Identities=14% Similarity=-0.030 Sum_probs=61.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC--CCCChHHHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS--NFGEFQSLMQHIQECVQ 281 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 281 (955)
-.++.|+|..|+||||++..+.+. ...+-..++.+...... + ....+++.++.... ......++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 458899999999999999888773 33333334444333321 1 11233333332211 11233455555555554
Q ss_pred CceE-EEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC
Q 002187 282 RKKF-LLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 282 ~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
+.++ +||+|.+..-+.+..+.+. .+.+ .|-.||+|.+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 4555 9999999543323333332 2332 26789999884
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.92 E-value=0.02 Score=61.35 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=55.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-.++.|+|.+|+||||||.+++... ...=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 34699999999999999999988743 2222346789877766654 4555553321 2335566666666
Q ss_pred HHhc-CceEEEEEeCCC
Q 002187 278 ECVQ-RKKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~-~k~~LlVlDdvw 293 (955)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 6554 445589999984
No 248
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.91 E-value=0.041 Score=56.38 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred CccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHH
Q 002187 177 SEIVGREKEKKELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 250 (955)
.+++|.+..+.++.+....-... +-.-.+-+.|+|..|+||||||+.+++.. . ...+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH------H
Confidence 46889886655554433210000 00011128999999999999999999842 2 122333221 1
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHh-cCceEEEEEeCCCCcc----------ccC----hhhHHhhccCCC--CC
Q 002187 251 IARAIIEALTGSASNFGEFQSLMQHIQECV-QRKKFLLVLDDVWNED----------YCK----WEPFYHCLKDGL--HE 313 (955)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~----------~~~----~~~l~~~l~~~~--~g 313 (955)
+ ... . ..........+.+.. .....++++|++..-. ... ...+...+..+. ..
T Consensus 85 ~----~~~----~--~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 85 F----VEM----F--VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp H----HHS----C--TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred H----HHH----H--hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 110 0 000111112222222 2346899999994210 001 122333333322 22
Q ss_pred cEEEEecCChhHHH-hh----cCcceEeCCCCChhhHHHHhHhhh
Q 002187 314 SKILITTRKETVAC-IM----GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 314 s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
.-++.||....+.. .. .....+.++..+.++-.+++...+
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 34555666544332 11 124567888888888888887665
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.89 E-value=0.02 Score=61.75 Aligned_cols=83 Identities=22% Similarity=0.139 Sum_probs=54.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCC-----CCCCChHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSA-----SNFGEFQSLMQHIQE 278 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 278 (955)
-.++.|.|.+|+||||||.+++... ...-..++|++....++.. .++.++... ....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3488899999999999998887643 2222468899988776654 244444321 112345666666766
Q ss_pred HhcC-ceEEEEEeCCC
Q 002187 279 CVQR-KKFLLVLDDVW 293 (955)
Q Consensus 279 ~l~~-k~~LlVlDdvw 293 (955)
..+. +--+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 6653 34599999984
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.88 E-value=0.042 Score=57.18 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=78.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC------CCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 175 DESEIVGREKEKKELVNRLLCESSK------EQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
.-.+++|.+..++++.+....-... +-.-.+-+.|+|..|+||||||+.+++.. . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 3457899887666655443211000 00011128999999999999999999842 2 223333321
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc----------ccCh----hhHHhhccCCC--C
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED----------YCKW----EPFYHCLKDGL--H 312 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~----~~l~~~l~~~~--~ 312 (955)
.+ .... .. .....+...++..-.....++|+|++..-. ...+ ..+...+..+. .
T Consensus 108 -~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DF----VEMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HH----HHST----TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HH----HHHH----hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1100 00 001111122222222456899999994210 0111 12222333222 2
Q ss_pred CcEEEEecCChhHHH-hh----cCcceEeCCCCChhhHHHHhHhhh
Q 002187 313 ESKILITTRKETVAC-IM----GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 313 gs~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
...++.||....+.. .. .....+.++..+.++-.+++...+
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 234455665543321 11 224578888888888888887665
No 251
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.82 E-value=0.054 Score=56.10 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=78.5
Q ss_pred CccccchhHHHHHHHHHhcCCC--------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 177 SEIVGREKEKKELVNRLLCESS--------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~--------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
.++.|-++.++++.+.+..+-. .-.... -+.++|++|.||||||+.++... .. ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~-GvlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCS-EEEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCC-eEEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhh
Confidence 3566777666666554321100 000112 28999999999999999999832 21 2344443321110
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHH-hcCceEEEEEeCCCCccc-------cC----hhhHHhhccCC--CCCc
Q 002187 249 FRIARAIIEALTGSASNFGEFQSLMQHIQEC-VQRKKFLLVLDDVWNEDY-------CK----WEPFYHCLKDG--LHES 314 (955)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~-------~~----~~~l~~~l~~~--~~gs 314 (955)
........+..+.+. -.....++++|++..... .. ...+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 000011111122222 134578999999853110 01 11222233322 2334
Q ss_pred EEEEecCChhHHHh-h----cCcceEeCCCCChhhHHHHhHhhh
Q 002187 315 KILITTRKETVACI-M----GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 315 ~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
-++.+|....+... + .-...+.++..+.++-.++|+...
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 56666666544321 1 224577888888888888887765
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.81 E-value=0.019 Score=57.93 Aligned_cols=114 Identities=19% Similarity=0.123 Sum_probs=60.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC--------------------
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-------------------- 264 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------------- 264 (955)
.++.|+|.+|+|||||++.++.... ..=..++|+.... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 4899999999999999999886322 2222456666543 333333332 23321100
Q ss_pred ---CCCChHHHHHHHHHHhc---CceEEEEEeCCCCc---cccChhhHHhhccC--CCCCcEEEEecCCh
Q 002187 265 ---NFGEFQSLMQHIQECVQ---RKKFLLVLDDVWNE---DYCKWEPFYHCLKD--GLHESKILITTRKE 323 (955)
Q Consensus 265 ---~~~~~~~~~~~l~~~l~---~k~~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 323 (955)
...+.+++...+.+.+. -+..+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11134555555555443 23349999998521 22223333333322 12467788888765
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.80 E-value=0.1 Score=56.18 Aligned_cols=157 Identities=10% Similarity=-0.050 Sum_probs=99.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHH-HhcC
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQE-CVQR 282 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 282 (955)
..+..++|..|.||++.|..+.+... ...|+...-+.+....++ .++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCcc
Confidence 44888999999999999998887422 223432222222222233 223222221 2346
Q ss_pred ceEEEEEeCCCC-ccccChhhHHhhccCCCCCcEEEEecCC-------hhHHHhhc-CcceEeCCCCChhhHHHHhHhhh
Q 002187 283 KKFLLVLDDVWN-EDYCKWEPFYHCLKDGLHESKILITTRK-------ETVACIMG-STNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 283 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
++-++|+|++.. .....++.+...+....+++.+|++|.. ..+...+. ....++..+++.++-...+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 4445677788887766667777776642 23444433 35689999999999988887766
Q ss_pred cCCCCCCCcchHHHHHHHHHhhcCCChHHHHHH
Q 002187 354 FSGKSTVERENLEEIGREITRKCKGLPLAAKTI 386 (955)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 386 (955)
-..+-. --.+.+..+++.++|.+.++...
T Consensus 156 ~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 432211 11356788999999988877653
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.78 E-value=0.018 Score=61.45 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc---------cC-----CceEEEEeCCcccHHHHHHHHHHHHcCCC-----
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK---------KF-----EKRMWICVSELFDEFRIARAIIEALTGSA----- 263 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----- 263 (955)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++...+.. +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346899999999999999988876321111 11 3678999888877766553 445554321
Q ss_pred ----CCCCChH---HHHHHHHHHhcC--ceEEEEEeCC
Q 002187 264 ----SNFGEFQ---SLMQHIQECVQR--KKFLLVLDDV 292 (955)
Q Consensus 264 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 292 (955)
....+.+ ++...+.+.+.. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 234445555543 4458888887
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.76 E-value=0.023 Score=68.58 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=84.3
Q ss_pred CccccchhHHHHHHHHHhcC----C---CCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH
Q 002187 177 SEIVGREKEKKELVNRLLCE----S---SKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF 249 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 249 (955)
.+++|.+..++++.+++... . .-.-.....|.|+|.+|+||||||+.+++. ....| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 46899999888888877431 0 001123446899999999999999999883 33332 3333211
Q ss_pred HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCccc------c-----ChhhHHhhccC--CCCCcEE
Q 002187 250 RIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNEDY------C-----KWEPFYHCLKD--GLHESKI 316 (955)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~------~-----~~~~l~~~l~~--~~~gs~i 316 (955)
+..... ......+...++........++++|++..... . ....+...+.. ...+..|
T Consensus 274 ---------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 274 ---------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred ---------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 111100 01112222333333345678999999943110 0 01122222221 1233456
Q ss_pred EEecCCh-hHHHhhc----CcceEeCCCCChhhHHHHhHhhh
Q 002187 317 LITTRKE-TVACIMG----STNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 317 ivTtr~~-~v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
|.||... .+...+. -...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6666553 2222211 13457788888888888887665
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.73 E-value=0.024 Score=60.88 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=53.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQE 278 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 278 (955)
-.++.|+|.+|+||||||.+++... ...=..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 3489999999999999998888632 2222457899988766653 2444443211 12345566655555
Q ss_pred HhcC-ceEEEEEeCCC
Q 002187 279 CVQR-KKFLLVLDDVW 293 (955)
Q Consensus 279 ~l~~-k~~LlVlDdvw 293 (955)
..+. +.-+||+|.+-
T Consensus 134 l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHTTTCCSEEEEECGG
T ss_pred HHhcCCCCEEEEcChH
Confidence 5543 45599999984
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.68 E-value=0.016 Score=62.27 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=52.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQE 278 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 278 (955)
-.++.|.|.+|+||||||.+++... ...=..++|++....++... +..++.... ...+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 3489999999999999998888743 22223688999887776432 344443211 11234555555554
Q ss_pred Hhc-CceEEEEEeCCC
Q 002187 279 CVQ-RKKFLLVLDDVW 293 (955)
Q Consensus 279 ~l~-~k~~LlVlDdvw 293 (955)
..+ .+--+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 443 444599999983
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.61 E-value=0.022 Score=57.86 Aligned_cols=88 Identities=19% Similarity=0.159 Sum_probs=51.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCcccHHHHHHHHHHHHcCCC---------CCCCChHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWICVSELFDEFRIARAIIEALTGSA---------SNFGEFQS 271 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~ 271 (955)
.++.|+|.+|+|||||++.++....... .-..++|+.....+....+ ..+++.++... ....+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4899999999999999998876321111 1246788887775554433 23444443221 01112222
Q ss_pred ---HHHHHHHHhc-CceEEEEEeCCC
Q 002187 272 ---LMQHIQECVQ-RKKFLLVLDDVW 293 (955)
Q Consensus 272 ---~~~~l~~~l~-~k~~LlVlDdvw 293 (955)
....+.+.+. .+.-+||+|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2333444443 456788999884
No 259
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.59 E-value=0.042 Score=59.06 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=39.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhc----cCCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKK----KFEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+. .++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 456899999999999999988876322211 12467899988877766554 3444443
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.52 E-value=0.038 Score=57.37 Aligned_cols=82 Identities=9% Similarity=0.124 Sum_probs=53.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhcc--CCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHH-HHHHH
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKK--FEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSL-MQHIQ 277 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 277 (955)
++-|.|.+|+||||||.+++.. .... =..++||+....++.. .+++++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6899999999999999887763 3233 2357899988877754 2666665422 12345555 33333
Q ss_pred HH--h-cCceEEEEEeCCCC
Q 002187 278 EC--V-QRKKFLLVLDDVWN 294 (955)
Q Consensus 278 ~~--l-~~k~~LlVlDdvw~ 294 (955)
.. + .++.-+||+|-+-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 2 35677999999843
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.50 E-value=0.046 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcch
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 262
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.46 E-value=0.035 Score=59.18 Aligned_cols=56 Identities=27% Similarity=0.274 Sum_probs=38.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhcc----CCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKK----FEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
-.++.|+|.+|+||||||.+++........ -..++|++....++...+. ++++.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 348999999999999999888763211111 2357899988877766554 3445554
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.09 E-value=0.024 Score=55.84 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 181 GREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 181 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|++.++.+.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888886542 23567999999999999999999887
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.08 E-value=0.1 Score=54.29 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhc-cCCceEEEEeCCcccHHHHHHHHHHHH------cC-CCCCCCChHHHH
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKK-KFEKRMWICVSELFDEFRIARAIIEAL------TG-SASNFGEFQSLM 273 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~ 273 (955)
....+|+|+|..|+||||||+.+.......+ .......|+...-+-.......+.... .. ..++..+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998887433211 122333435443333333333433221 10 123445566666
Q ss_pred HHHHHHhcC
Q 002187 274 QHIQECVQR 282 (955)
Q Consensus 274 ~~l~~~l~~ 282 (955)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666655444
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.73 E-value=0.061 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+++|+|.+|+||||++..++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998874
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.73 E-value=0.34 Score=53.19 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...||.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888763
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.65 E-value=0.085 Score=55.61 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=54.2
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcccHHHHHHHHH
Q 002187 179 IVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 179 ~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.+|....+..+...+.... ......+|+|.|..|+||||+|+.+..- ..... ..+..+....-+-....+...
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~~~- 143 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLEKQ- 143 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHHHT-
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhhhH-
Confidence 3555566666666665543 2346789999999999999999988762 22111 123344433322111111110
Q ss_pred HHH-cCCCCCCCChHHHHHHHHHHhcCc
Q 002187 257 EAL-TGSASNFGEFQSLMQHIQECVQRK 283 (955)
Q Consensus 257 ~~l-~~~~~~~~~~~~~~~~l~~~l~~k 283 (955)
... ....++.-+.+.+.+.+.....++
T Consensus 144 ~~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 144 GLMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TCGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HHHhhccCcccccHHHHHHHHHhhhccc
Confidence 000 011233456666777777666665
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.59 E-value=0.21 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999874
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.43 E-value=0.13 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999874
No 270
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.41 E-value=0.097 Score=54.99 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCC-ceEEEEeC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFE-KRMWICVS 243 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs 243 (955)
.+++|+|.+|+|||||++.++..... .-. .++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 38999999999999999998874322 212 35566543
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.25 E-value=0.033 Score=55.12 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.++|.+.+... .+.-.+|+|+|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555655432 134569999999999999999998873
No 272
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.18 E-value=0.2 Score=52.57 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=46.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH--HHHHHHHHHHcCCC---CCCCChHHH-HHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF--RIARAIIEALTGSA---SNFGEFQSL-MQHI 276 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 276 (955)
...++.|+|.+|+||||++..++... +..-..+.++... .+... +-+...++..+... ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999988743 2221234455433 22221 22333444443221 111122222 2334
Q ss_pred HHHhcCceEEEEEeCC
Q 002187 277 QECVQRKKFLLVLDDV 292 (955)
Q Consensus 277 ~~~l~~k~~LlVlDdv 292 (955)
...+..+.-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4444444458888865
No 273
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.15 E-value=0.03 Score=63.09 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 178 EIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.++|++..++.+...+.... -|.++|.+|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 68999999988888876543 5889999999999999999984
No 274
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.11 E-value=0.025 Score=60.22 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCcccHHHHHHHHHHHHcC----C
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEK-RMWICVSELFDEFRIARAIIEALTG----S 262 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~----~ 262 (955)
++++.+..-. .-..++|+|..|+|||||++.+.+.... ++=+. ++++-+++...... ++.+.+.. .
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I~~lIGER~~Ev~---~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERPEEVT---EMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEESSCHHHHH---HHHTTCSSEEEEE
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEEEEEecCChHHHH---HHHHHhCeEEEEe
Confidence 5566665432 2237999999999999999998873221 12222 34577776543211 22222211 1
Q ss_pred CCCCCChHH-----HHHHHHHHh--cCceEEEEEeCC
Q 002187 263 ASNFGEFQS-----LMQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 263 ~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 292 (955)
..+...... ..-.+.+++ +++..||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 111111111 111223333 589999999999
No 275
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.11 E-value=0.066 Score=48.20 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=28.4
Q ss_pred EEEcCCCCcc--cccccccCCCCcceEEeecCCCccccchh-hcCCCCCCEEeeCCCC
Q 002187 594 TLKLDGSVII--EIPTNIEKLLHLKYLNLSCQMEIERLPET-LCELYNLERLNVDSCS 648 (955)
Q Consensus 594 ~L~L~~~~~~--~lp~~i~~L~~Lr~L~L~~~~~i~~LP~~-i~~L~~Lq~LdL~~~~ 648 (955)
+++.+++.++ .+|..+. .+|++|+|++|. |+.+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 5555555555 5554332 245666666665 5555542 4555556666665554
No 276
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.05 E-value=0.079 Score=59.58 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcch
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
.+.|.|.+|+||||++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999888743
No 277
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.00 E-value=0.2 Score=50.17 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhh---c-cCCceEEEEeCCcccH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVK---K-KFEKRMWICVSELFDE 248 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~ 248 (955)
-.+++|+|..|+|||||++.++...... . .-...+|+.....+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4599999999999999999987621110 1 1234778876554333
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.97 E-value=0.13 Score=55.20 Aligned_cols=90 Identities=26% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccC---C-ceEEEEeCCcccHHHHHHHHHHHHcCCC------------CCC
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF---E-KRMWICVSELFDEFRIARAIIEALTGSA------------SNF 266 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~ 266 (955)
.-.++.|+|..|+|||||+..++......... . .++|++....+....+ ..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45699999999999999999888732111111 2 3489987665543332 33444332210 000
Q ss_pred CChHHHHHHHHHHhc------CceEEEEEeCCC
Q 002187 267 GEFQSLMQHIQECVQ------RKKFLLVLDDVW 293 (955)
Q Consensus 267 ~~~~~~~~~l~~~l~------~k~~LlVlDdvw 293 (955)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112233444455553 356689999874
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.91 E-value=0.024 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.80 E-value=0.028 Score=53.68 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 002187 206 IISLVGMGGIGKTTLAQFA 224 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v 224 (955)
+|.|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.78 E-value=0.056 Score=56.42 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544322 234567899999999999999999876
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.78 E-value=0.24 Score=54.27 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...++.|+|.+|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988874
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.70 E-value=0.038 Score=53.70 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999873
No 284
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.70 E-value=0.11 Score=50.24 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=58.6
Q ss_pred cCCCceEEEecCC-Cchh-hHHHHHHHhcCCCcccEEEcCCCCccc-----ccccccCCCCcceEEeecCCCcc-----c
Q 002187 561 NVKGLRSLLVKSD-EYSW-SIEVLRQLFDKLTCLRTLKLDGSVIIE-----IPTNIEKLLHLKYLNLSCQMEIE-----R 628 (955)
Q Consensus 561 ~~~~Lr~L~l~~~-~~~~-~~~~l~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~L~~Lr~L~L~~~~~i~-----~ 628 (955)
.-+.|++|.+.++ .... -...+...+..-..|+.|+|++|.+.. +.+.+..-..|++|+|++|. |+ .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHH
Confidence 4556777777653 3211 112234446666777777777777653 33344445667777777776 54 2
Q ss_pred cchhhcCCCCCCEEeeCCCCC--cc-----ccCccccCCCCCcEeeCCCC
Q 002187 629 LPETLCELYNLERLNVDSCSN--LR-----ELPQGIGKLRKLMHLENDQT 671 (955)
Q Consensus 629 LP~~i~~L~~Lq~LdL~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 671 (955)
+-+.+..-..|++|+|++|.. +. .+-..+..-+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 333444555677777765431 11 12222334456666666544
No 285
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.68 E-value=0.035 Score=58.61 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=28.6
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
++.+||+|.|-|||||||.|..+.-- ....=..+.=|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 46789999999999999999777663 222222355666553
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.62 E-value=0.058 Score=57.16 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 180 VGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 180 vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
|+-+.-.+.+++.+...-. .+....|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455666777777643221 235667899999999999999999883
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.61 E-value=0.011 Score=57.19 Aligned_cols=107 Identities=12% Similarity=-0.043 Sum_probs=50.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCC--CCCCCChHHHHHHHHHHhcC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGS--ASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~ 282 (955)
.++.|+|..|+||||++..++.....++ . .++.+....+ .+.-...+...++.. .....+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 3788999999999999966665322222 1 2333322211 000000001111110 000011122 2222234
Q ss_pred ceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCC
Q 002187 283 KKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRK 322 (955)
Q Consensus 283 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 322 (955)
+.-+|++|.+..-+. +|......+.+. |..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 556999999965432 354444433333 6789998874
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.59 E-value=0.16 Score=55.40 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=36.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhh----hccCCceEEEEeCCcccHHHHHHHHHHHHc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDV----KKKFEKRMWICVSELFDEFRIARAIIEALT 260 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 260 (955)
-.++.|+|.+|+|||||+..++-.... ...-..++|++....+....+ +.+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 348999999999999999976521111 112245889887776655443 33555554
No 289
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.58 E-value=0.5 Score=52.15 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCC---CCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 185 EKKELVNRLLCESS---KEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 185 ~~~~i~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+++.+.|..... ......++|.|+|.+|+||||++..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666643221 01235789999999999999999888874
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.56 E-value=0.033 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|.|.|+.|+||||+|+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 291
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.49 E-value=0.059 Score=55.15 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+.+.+.+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555554332 334567999999999999999999887
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.48 E-value=0.037 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999886
No 293
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.48 E-value=0.33 Score=51.24 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=36.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL 259 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 259 (955)
.++.|.|.+|+||||||..++.+...++ ..++|++.. .+..++...+....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 4899999999999999988876432222 467787765 45666666666543
No 294
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.47 E-value=0.053 Score=58.96 Aligned_cols=50 Identities=30% Similarity=0.347 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHHhcC-------C--CCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 178 EIVGREKEKKELVNRLLCE-------S--SKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 178 ~~vGr~~~~~~i~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.++|.+..++.+...+... . .........|.++|.+|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789988888888777210 0 001113456889999999999999999983
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.41 E-value=0.036 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|.|+|+.|+||||+|+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.32 E-value=0.21 Score=52.94 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=35.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL 259 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 259 (955)
.++.|.|.+|+||||||..++.+... +=..++|++.. .+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 48899999999999999988874322 22346666553 45666666665554
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.27 E-value=0.048 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.-.+|+|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999884
No 298
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.22 E-value=0.037 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999886
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.19 E-value=0.17 Score=55.76 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=49.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-HHHHHHHHHHH--Hc------CCCCCCCChHH----H
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD-EFRIARAIIEA--LT------GSASNFGEFQS----L 272 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~--l~------~~~~~~~~~~~----~ 272 (955)
.++|+|..|+|||||++.+...... .+-+..+++.+.+..+ ..+++.++... +. ....+...... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 5889999999999999999884322 2224556777776543 34444444321 00 01111111111 1
Q ss_pred HHHHHHHh---cCceEEEEEeCC
Q 002187 273 MQHIQECV---QRKKFLLVLDDV 292 (955)
Q Consensus 273 ~~~l~~~l---~~k~~LlVlDdv 292 (955)
.-.+.+++ ++++.||++||+
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 11233433 589999999999
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.13 E-value=0.035 Score=53.01 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 301
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.07 E-value=0.041 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999999987
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.03 E-value=0.057 Score=52.50 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 303
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.99 E-value=0.13 Score=49.79 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCcccEEEcCCC-Cccc-----ccccccCCCCcceEEeecCCCcc-----ccchhhcCCCCCCEEeeCCC
Q 002187 579 IEVLRQLFDKLTCLRTLKLDGS-VIIE-----IPTNIEKLLHLKYLNLSCQMEIE-----RLPETLCELYNLERLNVDSC 647 (955)
Q Consensus 579 ~~~l~~~~~~l~~Lr~L~L~~~-~~~~-----lp~~i~~L~~Lr~L~L~~~~~i~-----~LP~~i~~L~~Lq~LdL~~~ 647 (955)
...+...+.+-+.|+.|+|+++ .+.. +-+.+..-..|+.|+|++|. +. .+-+.+..-+.|++|+|+.|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3445666788899999999986 6643 44556677889999999988 65 34455666778999999888
Q ss_pred CCccc-----cCccccCCCCCcEeeCCCC
Q 002187 648 SNLRE-----LPQGIGKLRKLMHLENDQT 671 (955)
Q Consensus 648 ~~l~~-----lp~~i~~L~~L~~L~l~~~ 671 (955)
. +.. +-..+..-+.|++|++++|
T Consensus 109 ~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 F-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp B-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred c-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 7 543 2333444556888888654
No 304
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.99 E-value=0.28 Score=49.67 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=28.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL 245 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 245 (955)
.++.|.|.+|+||||||..++... ...=..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 489999999999999998776532 222235778776543
No 305
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.92 E-value=0.32 Score=50.73 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=46.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHHHHcCC---CCCCCChHHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIEALTGS---ASNFGEFQSLMQHIQEC 279 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 279 (955)
..++.++|.+|+||||++..++... ...=..+.++..... ......++...+..+.. .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999888743 222223555554322 22233334444444332 11122333333333333
Q ss_pred hcCceE-EEEEeCC
Q 002187 280 VQRKKF-LLVLDDV 292 (955)
Q Consensus 280 l~~k~~-LlVlDdv 292 (955)
++.++| ++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 432333 7888865
No 306
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.87 E-value=0.32 Score=55.32 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=36.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL 259 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 259 (955)
-.++.|.|.+|+||||||.+++.+...+ +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 3488999999999999998887743221 123577777654 4556666665544
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.80 E-value=0.069 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 308
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.77 E-value=0.047 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.74 E-value=0.053 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999883
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.74 E-value=0.055 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35899999999999999997654
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.68 E-value=0.047 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.65 E-value=0.061 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.58 E-value=0.065 Score=52.57 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.56 E-value=0.053 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.55 E-value=0.081 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+|+|+|..|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998873
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.55 E-value=0.65 Score=48.96 Aligned_cols=26 Identities=38% Similarity=0.371 Sum_probs=23.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
....+++|+|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988873
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.52 E-value=0.057 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
-.+|+|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 318
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.50 E-value=0.27 Score=54.27 Aligned_cols=99 Identities=22% Similarity=0.166 Sum_probs=61.0
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-HHHHHHHHHHHHcCC----
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD-EFRIARAIIEALTGS---- 262 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~---- 262 (955)
++++.|..-. +=.-++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... +.++..++...=...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 4566665432 12258999999999999999888732 223457788888887654 555666655431111
Q ss_pred ----------CCCCC-----ChHHHHHHHHHHhc---CceEEEEEeCC
Q 002187 263 ----------ASNFG-----EFQSLMQHIQECVQ---RKKFLLVLDDV 292 (955)
Q Consensus 263 ----------~~~~~-----~~~~~~~~l~~~l~---~k~~LlVlDdv 292 (955)
..+.. ......-.+.++++ ++..||++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01111 11223334556664 58999999998
No 319
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.47 E-value=0.94 Score=50.84 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...++|.|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888863
No 320
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.46 E-value=0.57 Score=51.43 Aligned_cols=25 Identities=48% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888874
No 321
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.45 E-value=0.17 Score=45.42 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=43.1
Q ss_pred ceEEeecCCCcc--ccchhhcCCCCCCEEeeCCCCCccccCcc-ccCCCCCcEeeCCCCC
Q 002187 616 KYLNLSCQMEIE--RLPETLCELYNLERLNVDSCSNLRELPQG-IGKLRKLMHLENDQTD 672 (955)
Q Consensus 616 r~L~L~~~~~i~--~LP~~i~~L~~Lq~LdL~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 672 (955)
..++.+++. ++ .+|..+ -.+|++|+|++|. +..+|.+ +..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 477888877 77 888654 3479999999998 8888876 5779999999999883
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.39 E-value=0.052 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 323
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.38 E-value=0.063 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999886
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.36 E-value=0.06 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999873
No 325
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.33 E-value=1 Score=53.47 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=78.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCC-------CCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc
Q 002187 175 DESEIVGREKEKKELVNRLLCESS-------KEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD 247 (955)
Q Consensus 175 ~~~~~vGr~~~~~~i~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 247 (955)
.-..+.|.++.++++.+.+.-+-. .+....+-|.++|++|.|||.+|+++++. .... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc---
Confidence 345678888887777766542211 01223455789999999999999999994 3222 333331
Q ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceEEEEEeCCCCcc----------ccC----hhhHHhhccC--CC
Q 002187 248 EFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKFLLVLDDVWNED----------YCK----WEPFYHCLKD--GL 311 (955)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~----~~~l~~~l~~--~~ 311 (955)
..+.....+. ....+.+.....-+..+++|+||+++.-. ... ..+++..+.. ..
T Consensus 545 ---------~~l~s~~vGe-se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 ---------PELLTMWFGE-SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp ---------HHHHTTTCSS-CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred ---------chhhccccch-HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1111111111 12223333333334578999999985310 001 1122222222 12
Q ss_pred CCcEEEEecCChh-HHHhh----cCcceEeCCCCChhhHHHHhHhhh
Q 002187 312 HESKILITTRKET-VACIM----GSTNIISINVLSEMGCWLVFEPLA 353 (955)
Q Consensus 312 ~gs~iivTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 353 (955)
.+--||-||.... +-..+ .-...+.++.-+.++-.++|+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2333444554432 21111 225677787777777777887655
No 326
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.33 E-value=0.064 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|.|+|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 327
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.32 E-value=0.3 Score=54.68 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=33.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAII 256 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 256 (955)
.++.|.|.+|+||||||..++...... .=..++|++... +...+...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 489999999999999999888743222 112577777554 3455555554
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.29 E-value=0.11 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999883
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.27 E-value=0.077 Score=52.47 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999887
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.25 E-value=0.063 Score=52.81 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999876
No 331
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.25 E-value=0.46 Score=49.56 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.25 E-value=0.08 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999886
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.25 E-value=0.074 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 334
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.21 E-value=0.78 Score=50.93 Aligned_cols=43 Identities=28% Similarity=0.473 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD 247 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 247 (955)
..-.+++|+|..|+|||||++.++... + .....+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll--~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF--E-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH--H-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh--h-hcCCeEEEecCcccc
Confidence 346799999999999999999998732 2 224556665444443
No 335
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.19 E-value=0.073 Score=57.44 Aligned_cols=45 Identities=27% Similarity=0.218 Sum_probs=32.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|.+..++.+...+..... .-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~------~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGI------GGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGG------CCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCCC------ceEEEECCCCccHHHHHHHHHHh
Confidence 4689998866655444433221 13889999999999999999873
No 336
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.19 E-value=0.055 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999986
No 337
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.18 E-value=0.065 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.18 E-value=0.078 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999887
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.13 E-value=0.089 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.-.+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999884
No 340
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.13 E-value=0.49 Score=50.07 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+++|+|..|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998874
No 341
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.10 E-value=0.072 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.10 E-value=0.057 Score=51.61 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 343
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.08 E-value=0.98 Score=60.92 Aligned_cols=138 Identities=17% Similarity=0.074 Sum_probs=71.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcCceE
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQRKKF 285 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 285 (955)
-|.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+++.+-..+.......... ..-.-.+|+.
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~~ 1338 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKNL 1338 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSCE
T ss_pred eEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCceE
Confidence 68899999999999997766531 122 2456777776666655555444332110000000 0000036788
Q ss_pred EEEEeCCCCccccC------hhhHHhhccCCC-----C-------CcEEEEecCChh------HH-HhhcCcceEeCCCC
Q 002187 286 LLVLDDVWNEDYCK------WEPFYHCLKDGL-----H-------ESKILITTRKET------VA-CIMGSTNIISINVL 340 (955)
Q Consensus 286 LlVlDdvw~~~~~~------~~~l~~~l~~~~-----~-------gs~iivTtr~~~------v~-~~~~~~~~~~l~~L 340 (955)
++.+||+.-...+. .+-++..+..++ . +..+|.++.... +. +...-..++.++..
T Consensus 1339 VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P 1418 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYP 1418 (2695)
T ss_dssp EEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCC
T ss_pred EEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCC
Confidence 99999974333222 233444333221 1 123444443221 11 11122356788888
Q ss_pred ChhhHHHHhHhhh
Q 002187 341 SEMGCWLVFEPLA 353 (955)
Q Consensus 341 ~~~~~~~lf~~~~ 353 (955)
+.++-..+|....
T Consensus 1419 ~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1419 SGKSLSQIYEIYY 1431 (2695)
T ss_dssp TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888777776654
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.08 E-value=0.076 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.99 E-value=0.17 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.96 E-value=0.082 Score=54.04 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999877
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.93 E-value=0.071 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999887
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.93 E-value=0.072 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999998873
No 349
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.93 E-value=0.077 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 350
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.92 E-value=0.065 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345889999999999999999887
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.91 E-value=0.083 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.89 E-value=0.44 Score=53.14 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=35.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEAL 259 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 259 (955)
.++.|.|.+|+||||||..++.+.... .=..++|++... +..++...++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 488999999999999998888743221 113467776653 4556666665543
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.83 E-value=0.056 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.79 E-value=0.1 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 355
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.79 E-value=0.11 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988874
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.73 E-value=0.14 Score=51.85 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 357
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.71 E-value=0.067 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.67 E-value=0.087 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 359
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.60 E-value=0.1 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.56 E-value=0.067 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.55 E-value=0.094 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+..+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999887
No 362
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.55 E-value=0.11 Score=54.71 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.-.+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 556999999999999999999887
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.51 E-value=0.1 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+||.|.|++|+||||.|+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 364
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.49 E-value=0.088 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 365
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.46 E-value=0.091 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|+|+|+.|+||||+++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 366
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.44 E-value=0.1 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999999987
No 367
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.41 E-value=0.096 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999887
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.39 E-value=0.09 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|.|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.34 E-value=0.11 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+++|+|.+|+||||+++.++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3459999999999999999999873
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.29 E-value=0.091 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 345899999999999999999886
No 371
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.20 E-value=0.12 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999873
No 372
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.19 E-value=0.1 Score=51.97 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 181 GREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 181 Gr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+.++..+.+.+.+.. ....+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344445555555421 25679999999999999999988874
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.12 E-value=0.1 Score=50.76 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.10 E-value=0.28 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 375
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.09 E-value=0.61 Score=51.25 Aligned_cols=99 Identities=23% Similarity=0.175 Sum_probs=59.9
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCccc-HHHHHHHHHHHHcCC----
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFD-EFRIARAIIEALTGS---- 262 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~---- 262 (955)
++++.|..-. +=.-++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... +.++.+++...=...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 5666665432 22368999999999999999988732 123446677888887653 455666665441111
Q ss_pred ---------CCCCCCh-----HHHHHHHHHHh---cCceEEEEEeCC
Q 002187 263 ---------ASNFGEF-----QSLMQHIQECV---QRKKFLLVLDDV 292 (955)
Q Consensus 263 ---------~~~~~~~-----~~~~~~l~~~l---~~k~~LlVlDdv 292 (955)
..+.... ....-.+.+++ +++..||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1111111 11222344444 478999999998
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.08 E-value=0.1 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 377
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.06 E-value=0.13 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.-.+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998877
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.02 E-value=0.074 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=16.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999876
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.99 E-value=0.22 Score=53.65 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 186 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+.+.+... .++..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 236789999999999999999888763
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.91 E-value=0.17 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.88 E-value=0.091 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999887
No 382
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.86 E-value=0.086 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998874
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.83 E-value=0.14 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.75 E-value=0.26 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.-.+++|+|..|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 385
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.74 E-value=0.59 Score=51.49 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999873
No 386
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.73 E-value=0.18 Score=48.71 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999988764
No 387
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.71 E-value=0.46 Score=54.68 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=53.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhc---
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSASNFGEFQSLMQHIQECVQ--- 281 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--- 281 (955)
+++.|.|.+|.||||++..+....... ...+.+.+........ +.+.++.. ... +++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~----L~e~~~~~---a~T-------ih~ll~~~~ 267 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARR----LGEVTGRT---AST-------VHRLLGYGP 267 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHH----HHHHHTSC---EEE-------HHHHTTEET
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHH----hHhhhccc---HHH-------HHHHHcCCc
Confidence 488999999999999999888743222 2345555544322222 22222211 111 111110
Q ss_pred ----------CceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEec
Q 002187 282 ----------RKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITT 320 (955)
Q Consensus 282 ----------~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 320 (955)
.+-=+||+|++...+...+..+...++ .+.++|+.-
T Consensus 268 ~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 268 QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 012389999986554444555655554 466777754
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.64 E-value=0.28 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 389
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.59 E-value=1.5 Score=43.76 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=44.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc-hhhhccC-CceEEEEeCCcccHHHHHHHHHHHHcCCCC---------------CC--
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN-VDVKKKF-EKRMWICVSELFDEFRIARAIIEALTGSAS---------------NF-- 266 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~~-- 266 (955)
.+.|+|..|.||||+.....-+ ....+.. ...+.+.+....-...+...+...++.... ..
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHAS 157 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSE
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCe
Confidence 7899999999999876544332 2222222 223333333333333444444443332100 00
Q ss_pred ---CChHHHHHHHHHHhcCceEEEEEeCCCC
Q 002187 267 ---GEFQSLMQHIQECVQRKKFLLVLDDVWN 294 (955)
Q Consensus 267 ---~~~~~~~~~l~~~l~~k~~LlVlDdvw~ 294 (955)
...+.+.+.+...+++- -+||+|.+..
T Consensus 158 Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 158 IMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp EEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred EEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 12344555555433333 3789999965
No 390
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.57 E-value=0.25 Score=64.17 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-++|.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+.. .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4558999999999999999988873 223323577888888776655 344442211 1123345555555
Q ss_pred HHhc-CceEEEEEeCCC
Q 002187 278 ECVQ-RKKFLLVLDDVW 293 (955)
Q Consensus 278 ~~l~-~k~~LlVlDdvw 293 (955)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 566799999983
No 391
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.48 E-value=0.12 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 392
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.48 E-value=0.17 Score=51.86 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.....++.+.|.||+||||++..+...
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345678899999999999999998863
No 393
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.47 E-value=0.065 Score=57.59 Aligned_cols=111 Identities=6% Similarity=0.120 Sum_probs=60.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHH--HHHHHHHHHHcCCCCCCCChHHHHHHHHHHhcC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEF--RIARAIIEALTGSASNFGEFQSLMQHIQECVQR 282 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (955)
.+++|+|..|.||||+.+.+... +.......+ +.+.+..... .. ..++.+.. ...+.......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~----~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESK-KCLVNQRE----VHRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCS-SSEEEEEE----BTTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhcc-ccceeeee----eccccCCHHHHHHHHhhh
Confidence 39999999999999999998873 222212222 2222211100 00 00000000 000112344478888888
Q ss_pred ceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHHh
Q 002187 283 KKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVACI 328 (955)
Q Consensus 283 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 328 (955)
.+=+|++|..-+ .+.++.+..... .|.-||+||-....+..
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHHHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHHHH
Confidence 888999999953 334444444432 35568888877655533
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.46 E-value=0.38 Score=62.54 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCCCC-----CCCChHHHHHHHH
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGSAS-----NFGEFQSLMQHIQ 277 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (955)
.-.++.|+|.+|+||||||.+++... ...=..++|++....++... ++.++.... +..+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34489999999999999999888743 32224678998887776532 455554321 2345666666666
Q ss_pred HHhc-CceEEEEEeCCCC
Q 002187 278 ECVQ-RKKFLLVLDDVWN 294 (955)
Q Consensus 278 ~~l~-~k~~LlVlDdvw~ 294 (955)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 5543 4556999999853
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.45 E-value=0.13 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 396
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.40 E-value=0.13 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 348999999999999999998873
No 397
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.40 E-value=0.12 Score=50.07 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcch
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988743
No 398
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.37 E-value=0.65 Score=49.48 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCc-eEEEEeCCc
Q 002187 187 KELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEK-RMWICVSEL 245 (955)
Q Consensus 187 ~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~ 245 (955)
-++++.+..-. .=..++|+|..|+|||+|++.+.+....+ +=+. ++++-+++.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 46677776432 22368999999999999999998843221 2232 356666654
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.37 E-value=0.15 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.35 E-value=0.074 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998873
No 401
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.28 E-value=0.13 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.18 E-value=0.16 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-.+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.16 E-value=0.14 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 404
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.15 E-value=0.15 Score=48.56 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998874
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.12 E-value=0.11 Score=52.80 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|+|+|+.|+||||+++.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.11 E-value=0.22 Score=54.75 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=35.7
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCE--------SSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|.++.++.+...+... .-......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889888888887666321 0000112345889999999999999999883
No 407
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.04 E-value=0.31 Score=51.31 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.3
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL 245 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 245 (955)
....++|+|+|-||+||||+|..++... ...=..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence 3467899999999999999998887733 222224566665543
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.03 E-value=0.33 Score=52.02 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...+++|+|..|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999874
No 409
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.00 E-value=0.15 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 410
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.96 E-value=0.19 Score=51.82 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||++.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 899999999999999999986
No 411
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.95 E-value=0.21 Score=48.28 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 186 ~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+..+..++.+- +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555321 23346899999999999999998884
No 412
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.93 E-value=0.15 Score=51.29 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 899999999999999999987
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.92 E-value=0.13 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999873
No 414
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.92 E-value=0.15 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.88 E-value=0.15 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999987
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.88 E-value=0.15 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999998884
No 417
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.87 E-value=0.15 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.82 E-value=0.2 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|.|||||.+.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999987
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.81 E-value=0.22 Score=57.98 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|.+..++.+...+... ..+.|+|..|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888888777533 26899999999999999999883
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.68 E-value=0.16 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 421
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.67 E-value=0.17 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 422
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.64 E-value=0.23 Score=51.01 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||++.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 899999999999999999987
No 423
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.39 E-value=0.25 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 424
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.38 E-value=0.17 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 425
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.34 E-value=0.13 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=15.8
Q ss_pred EEEEEEcCCCChHHHHHHHHh-c
Q 002187 205 CIISLVGMGGIGKTTLAQFAY-N 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~-~ 226 (955)
.+++|+|..|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 489999999999999999998 5
No 426
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.33 E-value=0.44 Score=52.04 Aligned_cols=85 Identities=9% Similarity=0.124 Sum_probs=51.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhhccCC----ceEEEEeCCcc-cHHHHHHHHHHH--HcC-----CCCCCCChH---
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVKKKFE----KRMWICVSELF-DEFRIARAIIEA--LTG-----SASNFGEFQ--- 270 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~--- 270 (955)
-++|.|..|+|||+|+.++.+... .+-+ .++++-+.+.. .+.++..++... +.. ...+.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 478999999999999999988432 2223 56677777654 455555554432 110 111221111
Q ss_pred --HHHHHHHHHhc---CceEEEEEeCC
Q 002187 271 --SLMQHIQECVQ---RKKFLLVLDDV 292 (955)
Q Consensus 271 --~~~~~l~~~l~---~k~~LlVlDdv 292 (955)
...-.+.++++ ++..||++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12233555553 78999999998
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.28 E-value=0.43 Score=61.21 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcCC-----CCCCCChHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTGS-----ASNFGEFQSLMQHIQEC 279 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~ 279 (955)
+++.|.|.+|+||||||.+++. .....=..++|++....++... ++.++.+ .....+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred hcCceE-EEEEeCC
Q 002187 280 VQRKKF-LLVLDDV 292 (955)
Q Consensus 280 l~~k~~-LlVlDdv 292 (955)
.+..+. +||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 428
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.20 E-value=0.49 Score=52.35 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=55.3
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHH-HHHhcchhhhccCCc-eEEEEeCCccc-HHHHHHHHHHHHcC---
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLA-QFAYNNVDVKKKFEK-RMWICVSELFD-EFRIARAIIEALTG--- 261 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~--- 261 (955)
++++.|..-. .=.-++|+|..|+|||+|| ..+.+.. .-+. .+++-+++... +.++.+.+...=..
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 4566665332 1125899999999999996 5777742 2443 46777777643 44555555432100
Q ss_pred ----CCCCCCChH-----HHHHHHHHHh--cCceEEEEEeCC
Q 002187 262 ----SASNFGEFQ-----SLMQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 262 ----~~~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv 292 (955)
...+..... ...-.+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 111221111 1122344444 579999999998
No 429
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.17 E-value=0.23 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999983
No 430
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.14 E-value=1.5 Score=48.48 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=33.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEA 258 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 258 (955)
.++.|.|.+|+||||+|..++.+.-.+ =..++|++... +..++...++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 489999999999999998888753322 12466665443 445555555544
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.12 E-value=0.15 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999873
No 432
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.12 E-value=0.14 Score=50.31 Aligned_cols=22 Identities=36% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998863
No 433
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.11 E-value=0.47 Score=52.47 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHH-HHHhcchhhhccCCc-eEEEEeCCccc-HHHHHHHHHHHHcCC--
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLA-QFAYNNVDVKKKFEK-RMWICVSELFD-EFRIARAIIEALTGS-- 262 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-- 262 (955)
++++.|..-. +=.-++|+|..|+|||+|| ..+.+.. .-+. .+++-+++... +.++...+...=...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 4566665432 1225899999999999996 5777732 3453 46777877643 445555544321111
Q ss_pred -----CCCCCChHH-----HHHHHHHHh--cCceEEEEEeCC
Q 002187 263 -----ASNFGEFQS-----LMQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 263 -----~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 292 (955)
..+...... ..-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111111 122344444 579999999998
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.05 E-value=0.29 Score=50.07 Aligned_cols=110 Identities=10% Similarity=0.112 Sum_probs=55.8
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCc-ccHHHHHHHHHH--HHcCCCCCCCChHHHHHHHHHHh
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSEL-FDEFRIARAIIE--ALTGSASNFGEFQSLMQHIQECV 280 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l 280 (955)
-.+++|+|..|+|||||.+.+..- ....+...+++.-... +-.... ..++. .++. +. ..+...+...|
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHHH
Confidence 358999999999999999998873 2222234443321110 000000 00000 0000 01 12344566666
Q ss_pred cCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEecCChhHHH
Q 002187 281 QRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVAC 327 (955)
Q Consensus 281 ~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 327 (955)
..++=+|++|..-+ .+....+.... ..|.-|++||-...+..
T Consensus 96 ~~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 96 REDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred hhCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 55666888899852 22232322222 23566888887765443
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.04 E-value=0.23 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998874
No 436
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.01 E-value=0.19 Score=48.34 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.94 E-value=0.2 Score=50.64 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
No 438
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.90 E-value=0.19 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 439
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.87 E-value=0.17 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999873
No 440
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.85 E-value=0.2 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|.|||||.+.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 3899999999999999999987
No 441
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.79 E-value=0.2 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
No 442
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.76 E-value=0.2 Score=49.59 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 443
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.75 E-value=0.21 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999988
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.69 E-value=0.21 Score=52.38 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.68 E-value=0.2 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.66 E-value=0.21 Score=50.64 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999999987
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.55 E-value=0.21 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999873
No 448
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.51 E-value=0.22 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999883
No 449
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.50 E-value=0.67 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhcch
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~ 228 (955)
|+|=|.-|+||||.++.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6778999999999999999843
No 450
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.42 E-value=0.26 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 451
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.40 E-value=0.25 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999887
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.26 E-value=0.23 Score=50.79 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.+..-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 8999999999999999999873
No 453
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.25 E-value=0.23 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.+++|+|..|.|||||.+.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999873
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.25 E-value=0.24 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..|.|.|+.|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.25 E-value=0.26 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999987
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.21 E-value=0.23 Score=50.31 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999987
No 457
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.09 E-value=0.46 Score=48.81 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
++|+|.|-||+||||+|..++... ...=..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCC
Confidence 578889999999999998888733 22222455666543
No 458
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.07 E-value=0.24 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999873
No 459
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.06 E-value=0.66 Score=45.67 Aligned_cols=38 Identities=21% Similarity=0.059 Sum_probs=25.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
-.|.+.|.||+||||+|..+..... +.-++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCC
Confidence 4578899999999999988887432 22233 44455543
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.04 E-value=0.24 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 461
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.03 E-value=0.45 Score=47.56 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcch
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
.-..|.|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998843
No 462
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.03 E-value=0.24 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+++|+|..|.|||||.+.++.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999873
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.99 E-value=0.3 Score=53.85 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcch
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNV 228 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 228 (955)
...+|.|+|.+|+||||++..++...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999998888743
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.95 E-value=0.25 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+|.|.|++|+||||.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 465
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.93 E-value=0.25 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999987
No 466
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.83 E-value=0.25 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998874
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.75 E-value=0.32 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999987
No 468
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.62 E-value=0.26 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.62 E-value=0.14 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999887
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.60 E-value=0.27 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 202 KGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 202 ~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999887
No 471
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.54 E-value=0.28 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4899999999999999999887
No 472
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.43 E-value=0.33 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.35 E-value=0.28 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.++.|+|.+|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3899999999999999998886
No 474
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.35 E-value=0.8 Score=49.45 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=32.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
..++|....+.++...+..-.. ... .|.|.|.+|.||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~~-~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SKA-PVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SCS-CEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---cch-hheEEeCCCchHHHHHHHHHHh
Confidence 3578887766666655532221 112 3679999999999999998873
No 475
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.24 E-value=0.36 Score=53.07 Aligned_cols=100 Identities=7% Similarity=0.020 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHhcchhhhccC--CceEEEEeCCcc-cHHHHHHHHHHHHcC---
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKKF--EKRMWICVSELF-DEFRIARAIIEALTG--- 261 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~~l~~--- 261 (955)
++++.|..-.. =.-++|.|..|+|||+|+..++++....+.- +.++++-+.+.. .+.++...+...=..
T Consensus 141 r~ID~l~pigr-----GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLVR-----GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCBT-----TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeecccc-----CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 44666654321 1247788999999999999998854332211 346677777654 355555555443110
Q ss_pred ----CCCCCCCh-----HHHHHHHHHHh---cCceEEEEEeCC
Q 002187 262 ----SASNFGEF-----QSLMQHIQECV---QRKKFLLVLDDV 292 (955)
Q Consensus 262 ----~~~~~~~~-----~~~~~~l~~~l---~~k~~LlVlDdv 292 (955)
...+.... ....-.+.+++ +++..||++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111111 11223344554 379999999997
No 476
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.16 E-value=0.75 Score=50.97 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHH-HHHhcchhhh----ccCC-ceEEEEeCCccc-HHHHHHHHHHHHc
Q 002187 188 ELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLA-QFAYNNVDVK----KKFE-KRMWICVSELFD-EFRIARAIIEALT 260 (955)
Q Consensus 188 ~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~----~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~ 260 (955)
++++.|..-. .=.-++|+|..|+|||+|| ..+.+....- ++-+ .++++-+++... +.++.+.+...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4566665432 1225889999999999995 5777743210 1234 367888887653 4455555443110
Q ss_pred C-------CCCCCCChH-----HHHHHHHHHh--cCceEEEEEeCCC
Q 002187 261 G-------SASNFGEFQ-----SLMQHIQECV--QRKKFLLVLDDVW 293 (955)
Q Consensus 261 ~-------~~~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdvw 293 (955)
. ...+..... ...-.+.+++ +++..||++||+-
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0 111111111 1122344444 4799999999983
No 477
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.14 E-value=0.59 Score=48.65 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=26.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCC
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSE 244 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 244 (955)
++|+|.|-||+||||+|..++... ...=..++-|+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 688889999999999998888743 22212355666554
No 478
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.13 E-value=0.27 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 3899999999999999999976
No 479
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.12 E-value=0.31 Score=53.21 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=50.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcchhhh--------ccCC-ceEEEEeCCcc-cHHHHHHHHHHH--HcC-----CCCCCCC
Q 002187 206 IISLVGMGGIGKTTLAQFAYNNVDVK--------KKFE-KRMWICVSELF-DEFRIARAIIEA--LTG-----SASNFGE 268 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~ 268 (955)
-++|.|..|+|||+|+.++++..... ++=+ .++++-+.+.. .+.++..++.+. +.. ...+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 47899999999999999998853321 1111 46677777654 344555544331 110 1112222
Q ss_pred hH-----HHHHHHHHHhc---CceEEEEEeCC
Q 002187 269 FQ-----SLMQHIQECVQ---RKKFLLVLDDV 292 (955)
Q Consensus 269 ~~-----~~~~~l~~~l~---~k~~LlVlDdv 292 (955)
.. ...-.+.++++ ++..||++||+
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 21 22234555553 78999999998
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.10 E-value=0.32 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+.|.|.|..|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998873
No 481
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.08 E-value=3.8 Score=40.93 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=51.4
Q ss_pred EEEEcCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccHHHHHHHHHHHHcC---C--------CCCC-----CChH
Q 002187 207 ISLVGMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDEFRIARAIIEALTG---S--------ASNF-----GEFQ 270 (955)
Q Consensus 207 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~--------~~~~-----~~~~ 270 (955)
+.|+|..|.|||.+|..+... . -..++++ +... .+..++.+.+.. . .... ...+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~---~~~~liv-~P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L---STPTLIV-VPTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S---CSCEEEE-ESSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c---CCCEEEE-eCCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 778999999999999877763 1 1223444 3222 233334333321 1 0000 1123
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCccccChhhHHhhccCCCCCcEEEEe
Q 002187 271 SLMQHIQECVQRKKFLLVLDDVWNEDYCKWEPFYHCLKDGLHESKILIT 319 (955)
Q Consensus 271 ~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 319 (955)
.+..... .+.++--+||+|++..-....+..+...++ ...++.+|
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LS 225 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLT 225 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEe
Confidence 3333322 333445599999997654455666655554 23344444
No 482
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.07 E-value=0.38 Score=45.61 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 483
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.07 E-value=0.3 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998775
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.07 E-value=0.22 Score=57.68 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=32.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCC-----CCCCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 177 SEIVGREKEKKELVNRLLCESSKE-----QKGPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 177 ~~~vGr~~~~~~i~~~L~~~~~~~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+.++|.+...+.+.-.|.+..... ...-.-|.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 356888776655554443321000 001114789999999999999999874
No 485
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.99 E-value=1 Score=49.31 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCCEEEEEEcCCCChHHHHHHHHhc
Q 002187 201 QKGPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 201 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45788999999999999999998886
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.96 E-value=0.34 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCChHHHHHHHHhcc
Q 002187 204 PCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 204 ~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 487
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.88 E-value=0.32 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 488
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.88 E-value=0.31 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 002187 206 IISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~ 226 (955)
+++|+|..|.|||||.+.++.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
No 489
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.87 E-value=1.8 Score=50.20 Aligned_cols=46 Identities=20% Similarity=0.064 Sum_probs=29.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcchhhh-ccCCceEEEEeCCcccHHH
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNNVDVK-KKFEKRMWICVSELFDEFR 250 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~ 250 (955)
+++.|.|.+|.||||++..+....... ..-...+.+.+....-...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~ 211 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHH
Confidence 389999999999999998776532110 0112366776665433333
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.83 E-value=0.29 Score=47.11 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36789999999999999998764
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.71 E-value=0.4 Score=46.31 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999998874
No 492
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.64 E-value=0.42 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998874
No 493
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.57 E-value=0.59 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.116 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYN 226 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~ 226 (955)
.-.+++|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999987
No 494
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.57 E-value=0.62 Score=45.47 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=28.6
Q ss_pred EEEEEE-cCCCChHHHHHHHHhcchhhhccCCceEEEEeCCcccH
Q 002187 205 CIISLV-GMGGIGKTTLAQFAYNNVDVKKKFEKRMWICVSELFDE 248 (955)
Q Consensus 205 ~vv~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 248 (955)
++|+|+ +-||+||||+|..++.. ....=..++-|......+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCH
Confidence 578887 77999999999888874 3332234666776654433
No 495
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.54 E-value=0.31 Score=45.54 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcc
Q 002187 206 IISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 496
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=86.54 E-value=3.3 Score=49.51 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCEEEEEEcCCCChHHHHHHHHh
Q 002187 185 EKKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAY 225 (955)
Q Consensus 185 ~~~~i~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 225 (955)
..+.|...+... .++.|+|..|.||||++..+.
T Consensus 98 q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHH
Confidence 345566666432 279999999999999665543
No 497
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.45 E-value=0.34 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcc
Q 002187 205 CIISLVGMGGIGKTTLAQFAYNN 227 (955)
Q Consensus 205 ~vv~I~G~gGiGKTtLa~~v~~~ 227 (955)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 498
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.39 E-value=0.76 Score=49.04 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCChHHHHHHHHhcchhhh--ccCCceEEEEeCCcc
Q 002187 203 GPCIISLVGMGGIGKTTLAQFAYNNVDVK--KKFEKRMWICVSELF 246 (955)
Q Consensus 203 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~ 246 (955)
..+++.+.|.||+||||+|..++.. .. ..=..++-|+.....
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSSC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCCC
Confidence 4578999999999999999888763 33 222345566655443
No 499
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.36 E-value=0.51 Score=52.27 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=47.9
Q ss_pred EEEEEcCCCChHHHHH-HHHhcchhhhccCCc-eEEEEeCCccc-HHHHHHHHHHH--HcC-----CCCCCCC-----hH
Q 002187 206 IISLVGMGGIGKTTLA-QFAYNNVDVKKKFEK-RMWICVSELFD-EFRIARAIIEA--LTG-----SASNFGE-----FQ 270 (955)
Q Consensus 206 vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~--l~~-----~~~~~~~-----~~ 270 (955)
-++|+|..|+|||+|| ..+.+.. .-+. .+++-+++... +.++.+.+... +.. ...+... ..
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 5789999999999996 5887742 2343 47777877643 34444443321 000 0111111 11
Q ss_pred HHHHHHHHHh--cCceEEEEEeCC
Q 002187 271 SLMQHIQECV--QRKKFLLVLDDV 292 (955)
Q Consensus 271 ~~~~~l~~~l--~~k~~LlVlDdv 292 (955)
...-.+.+++ +++..||++||+
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecH
Confidence 2222333333 589999999998
No 500
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.36 E-value=0.67 Score=50.27 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCCCEEEEEEc-CCCChHHHHHHHHhcchhhhccCCceEEEEeC
Q 002187 201 QKGPCIISLVG-MGGIGKTTLAQFAYNNVDVKKKFEKRMWICVS 243 (955)
Q Consensus 201 ~~~~~vv~I~G-~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 243 (955)
+.+.++|+|+| -||+||||+|..++.. ....=..++-|++.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECC
Confidence 45678999985 9999999999888773 33332346677765
Done!