Query 002188
Match_columns 955
No_of_seqs 417 out of 2298
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 18:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 4E-211 8E-216 1885.7 65.1 817 117-949 7-897 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-205 4E-210 1845.7 71.1 754 117-885 31-817 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 2E-194 4E-199 1729.7 66.5 677 163-841 1-677 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 3E-189 7E-194 1685.5 65.2 659 171-841 1-671 (671)
5 cd01377 MYSc_type_II Myosin mo 100.0 7E-189 2E-193 1690.1 67.4 671 166-841 1-693 (693)
6 cd01380 MYSc_type_V Myosin mot 100.0 8E-189 2E-193 1689.3 65.8 670 171-841 1-691 (691)
7 cd01384 MYSc_type_XI Myosin mo 100.0 7E-188 1E-192 1672.6 63.9 658 170-844 1-673 (674)
8 cd01378 MYSc_type_I Myosin mot 100.0 2E-187 4E-192 1673.3 64.5 656 171-841 1-674 (674)
9 cd01387 MYSc_type_XV Myosin mo 100.0 1E-186 3E-191 1664.3 65.6 667 170-841 1-677 (677)
10 cd01385 MYSc_type_IX Myosin mo 100.0 3E-186 7E-191 1664.8 65.6 669 169-843 6-690 (692)
11 KOG0164 Myosin class I heavy c 100.0 2E-186 4E-191 1557.5 52.0 745 169-940 7-790 (1001)
12 cd01382 MYSc_type_VI Myosin mo 100.0 7E-185 1E-189 1658.6 64.8 662 169-840 3-715 (717)
13 smart00242 MYSc Myosin. Large 100.0 7E-183 2E-187 1640.2 64.9 664 165-842 1-677 (677)
14 cd01379 MYSc_type_III Myosin m 100.0 4E-182 9E-187 1618.0 62.5 634 171-841 1-653 (653)
15 KOG0161 Myosin class II heavy 100.0 1E-182 3E-187 1711.5 57.4 771 109-886 22-817 (1930)
16 cd00124 MYSc Myosin motor doma 100.0 9E-181 2E-185 1626.0 65.5 668 171-841 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 2E-179 5E-184 1613.6 64.4 667 172-841 2-767 (767)
18 KOG0162 Myosin class I heavy c 100.0 1E-180 2E-185 1509.6 44.7 700 168-887 16-735 (1106)
19 PF00063 Myosin_head: Myosin h 100.0 9E-175 2E-179 1588.0 59.1 659 172-830 1-689 (689)
20 KOG0163 Myosin class VI heavy 100.0 3E-173 6E-178 1449.5 56.9 786 120-925 5-844 (1259)
21 KOG0160 Myosin class V heavy c 100.0 2E-173 5E-178 1531.8 52.0 748 164-934 3-758 (862)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-119 4E-124 1095.4 24.1 771 163-940 54-1012(1062)
23 cd01363 Motor_domain Myosin an 98.7 1.1E-08 2.3E-13 106.4 6.2 86 237-330 8-98 (186)
24 KOG0520 Uncharacterized conser 97.9 1.3E-05 2.8E-10 98.6 6.2 96 846-941 811-938 (975)
25 PF02736 Myosin_N: Myosin N-te 97.8 7.2E-05 1.6E-09 58.7 6.2 40 121-160 3-42 (42)
26 KOG0160 Myosin class V heavy c 97.8 8.6E-05 1.9E-09 91.5 9.9 80 861-944 666-745 (862)
27 PF00612 IQ: IQ calmodulin-bin 97.1 0.00058 1.3E-08 45.4 3.4 18 896-913 3-20 (21)
28 PF00612 IQ: IQ calmodulin-bin 97.1 0.00067 1.5E-08 45.1 3.4 21 917-937 1-21 (21)
29 KOG0164 Myosin class I heavy c 96.9 0.002 4.3E-08 76.5 7.6 62 866-938 694-755 (1001)
30 PTZ00014 myosin-A; Provisional 96.5 0.0059 1.3E-07 76.7 8.4 42 894-935 777-818 (821)
31 KOG2128 Ras GTPase-activating 96.3 0.0098 2.1E-07 75.8 8.8 99 849-949 539-654 (1401)
32 KOG0925 mRNA splicing factor A 96.1 0.0043 9.3E-08 71.3 3.8 64 209-278 23-87 (699)
33 smart00015 IQ Short calmodulin 95.6 0.011 2.4E-07 41.4 2.8 19 895-913 4-22 (26)
34 smart00015 IQ Short calmodulin 95.6 0.014 2.9E-07 41.0 3.0 19 918-936 4-22 (26)
35 PF13207 AAA_17: AAA domain; P 95.3 0.014 2.9E-07 55.7 3.2 23 256-278 1-23 (121)
36 KOG2128 Ras GTPase-activating 95.0 0.053 1.1E-06 69.5 8.0 106 849-954 511-630 (1401)
37 PF13401 AAA_22: AAA domain; P 94.5 0.029 6.2E-07 54.0 3.1 29 252-280 2-30 (131)
38 COG5022 Myosin heavy chain [Cy 94.3 0.097 2.1E-06 67.6 7.8 81 857-938 734-814 (1463)
39 cd00009 AAA The AAA+ (ATPases 94.2 0.061 1.3E-06 51.5 4.7 31 249-279 14-44 (151)
40 PF13238 AAA_18: AAA domain; P 94.1 0.037 8.1E-07 52.7 3.0 22 257-278 1-22 (129)
41 PF13191 AAA_16: AAA ATPase do 94.1 0.034 7.4E-07 56.6 2.8 33 249-281 19-51 (185)
42 TIGR02322 phosphon_PhnN phosph 94.0 0.041 9E-07 56.4 3.2 25 255-279 2-26 (179)
43 TIGR03015 pepcterm_ATPase puta 93.9 0.093 2E-06 57.2 5.9 28 252-279 41-68 (269)
44 cd02019 NK Nucleoside/nucleoti 93.6 0.062 1.3E-06 46.6 3.2 22 257-278 2-23 (69)
45 KOG0161 Myosin class II heavy 93.4 0.59 1.3E-05 63.3 12.9 71 865-935 770-843 (1930)
46 PRK05480 uridine/cytidine kina 93.3 0.076 1.7E-06 56.0 3.8 27 252-278 4-30 (209)
47 PRK06696 uridine kinase; Valid 93.3 0.11 2.4E-06 55.6 5.1 40 239-280 9-48 (223)
48 cd01918 HprK_C HprK/P, the bif 93.1 0.079 1.7E-06 53.3 3.3 24 254-277 14-37 (149)
49 PRK09270 nucleoside triphospha 93.0 0.21 4.5E-06 53.7 6.8 34 250-283 29-62 (229)
50 cd01131 PilT Pilus retraction 93.0 0.073 1.6E-06 56.0 3.1 25 256-280 3-27 (198)
51 PF00004 AAA: ATPase family as 93.0 0.071 1.5E-06 51.0 2.9 23 257-279 1-23 (132)
52 cd00820 PEPCK_HprK Phosphoenol 93.0 0.08 1.7E-06 50.3 3.1 23 253-275 14-36 (107)
53 smart00382 AAA ATPases associa 92.9 0.069 1.5E-06 50.4 2.5 28 254-281 2-29 (148)
54 TIGR00150 HI0065_YjeE ATPase, 92.8 0.16 3.5E-06 50.2 5.1 27 252-278 20-46 (133)
55 PF01583 APS_kinase: Adenylyls 92.8 0.12 2.7E-06 52.3 4.3 29 254-282 2-30 (156)
56 PRK13833 conjugal transfer pro 92.7 0.13 2.8E-06 58.3 4.8 35 244-280 136-170 (323)
57 KOG0520 Uncharacterized conser 92.7 0.18 3.8E-06 63.4 6.3 76 847-928 868-945 (975)
58 PRK00300 gmk guanylate kinase; 92.7 0.078 1.7E-06 55.5 2.9 26 253-278 4-29 (205)
59 cd02023 UMPK Uridine monophosp 92.7 0.085 1.8E-06 55.1 3.1 22 257-278 2-23 (198)
60 PF00485 PRK: Phosphoribulokin 92.7 0.081 1.8E-06 55.2 3.0 26 257-282 2-27 (194)
61 TIGR00235 udk uridine kinase. 92.7 0.11 2.4E-06 54.9 3.9 28 252-279 4-31 (207)
62 cd01129 PulE-GspE PulE/GspE Th 92.6 0.13 2.9E-06 56.6 4.6 36 244-280 71-106 (264)
63 PRK06762 hypothetical protein; 92.5 0.11 2.5E-06 52.5 3.6 25 254-278 2-26 (166)
64 COG0444 DppD ABC-type dipeptid 92.4 0.08 1.7E-06 59.1 2.6 28 252-279 29-56 (316)
65 PRK08233 hypothetical protein; 92.4 0.085 1.8E-06 53.8 2.6 25 255-279 4-28 (182)
66 COG0194 Gmk Guanylate kinase [ 92.2 0.1 2.2E-06 54.2 2.8 25 254-278 4-28 (191)
67 cd02020 CMPK Cytidine monophos 92.2 0.11 2.5E-06 50.8 3.1 22 257-278 2-23 (147)
68 TIGR03420 DnaA_homol_Hda DnaA 92.2 0.21 4.6E-06 52.9 5.4 40 241-280 25-64 (226)
69 PRK06547 hypothetical protein; 92.2 0.21 4.5E-06 51.5 5.1 28 251-278 12-39 (172)
70 TIGR02173 cyt_kin_arch cytidyl 92.1 0.1 2.3E-06 52.6 2.9 23 256-278 2-24 (171)
71 PF12846 AAA_10: AAA-like doma 92.0 0.13 2.7E-06 56.6 3.6 30 254-283 1-30 (304)
72 PRK05541 adenylylsulfate kinas 91.9 0.11 2.4E-06 53.1 2.8 29 252-280 5-33 (176)
73 cd02028 UMPK_like Uridine mono 91.8 0.13 2.8E-06 53.2 3.2 24 257-280 2-25 (179)
74 PRK00131 aroK shikimate kinase 91.8 0.14 3E-06 51.7 3.4 26 253-278 3-28 (175)
75 PTZ00301 uridine kinase; Provi 91.8 0.13 2.8E-06 54.8 3.2 23 257-279 6-28 (210)
76 PRK07261 topology modulation p 91.8 0.13 2.7E-06 52.9 3.0 23 256-278 2-24 (171)
77 TIGR02782 TrbB_P P-type conjug 91.8 0.19 4.2E-06 56.4 4.7 34 245-280 125-158 (299)
78 cd02025 PanK Pantothenate kina 91.7 0.13 2.8E-06 55.1 3.2 24 257-280 2-25 (220)
79 cd01130 VirB11-like_ATPase Typ 91.6 0.12 2.6E-06 53.6 2.7 26 254-279 25-50 (186)
80 PRK07196 fliI flagellum-specif 91.5 0.31 6.7E-06 57.3 6.1 43 236-278 137-179 (434)
81 PRK08118 topology modulation p 91.3 0.16 3.6E-06 51.9 3.3 25 255-279 2-26 (167)
82 PF05729 NACHT: NACHT domain 91.3 0.18 3.8E-06 50.2 3.4 27 256-282 2-28 (166)
83 PF07724 AAA_2: AAA domain (Cd 91.3 0.18 4E-06 51.8 3.6 24 256-279 5-28 (171)
84 PF03668 ATP_bind_2: P-loop AT 91.2 0.15 3.2E-06 56.4 2.9 20 255-274 2-21 (284)
85 cd00227 CPT Chloramphenicol (C 91.2 0.18 3.9E-06 51.7 3.4 25 254-278 2-26 (175)
86 PF13245 AAA_19: Part of AAA d 91.0 0.28 6.1E-06 43.6 4.0 28 253-280 9-36 (76)
87 PRK10078 ribose 1,5-bisphospho 90.9 0.14 3E-06 53.1 2.4 23 255-277 3-25 (186)
88 PRK08084 DNA replication initi 90.9 0.36 7.8E-06 52.2 5.6 42 239-280 30-71 (235)
89 TIGR01420 pilT_fam pilus retra 90.9 0.16 3.6E-06 58.0 3.1 35 245-280 114-148 (343)
90 TIGR02928 orc1/cdc6 family rep 90.9 0.24 5.1E-06 56.7 4.4 37 244-280 30-66 (365)
91 PRK00889 adenylylsulfate kinas 90.9 0.27 5.8E-06 50.3 4.4 28 253-280 3-30 (175)
92 PRK14737 gmk guanylate kinase; 90.8 0.17 3.6E-06 52.9 2.8 25 254-278 4-28 (186)
93 TIGR00554 panK_bact pantothena 90.8 0.43 9.4E-06 53.3 6.2 31 251-281 59-89 (290)
94 cd00071 GMPK Guanosine monopho 90.7 0.16 3.4E-06 50.3 2.4 22 257-278 2-23 (137)
95 PF00910 RNA_helicase: RNA hel 90.6 0.21 4.5E-06 47.2 3.0 24 257-280 1-24 (107)
96 PRK13851 type IV secretion sys 90.6 0.23 5E-06 56.8 3.9 26 254-279 162-187 (344)
97 TIGR01313 therm_gnt_kin carboh 90.6 0.16 3.4E-06 51.3 2.2 22 257-278 1-22 (163)
98 PRK14738 gmk guanylate kinase; 90.5 0.2 4.4E-06 52.9 3.2 26 252-277 11-36 (206)
99 PRK03846 adenylylsulfate kinas 90.5 0.36 7.8E-06 50.6 5.0 33 250-282 20-52 (198)
100 cd02027 APSK Adenosine 5'-phos 90.4 0.23 4.9E-06 49.8 3.2 24 257-280 2-25 (149)
101 PF03266 NTPase_1: NTPase; In 90.4 0.22 4.9E-06 51.1 3.2 24 257-280 2-25 (168)
102 cd02024 NRK1 Nicotinamide ribo 90.3 0.19 4.2E-06 52.5 2.8 22 257-278 2-23 (187)
103 PF00437 T2SE: Type II/IV secr 90.3 0.18 3.9E-06 55.3 2.7 30 252-281 125-154 (270)
104 PRK14961 DNA polymerase III su 90.2 0.37 8.1E-06 55.5 5.2 52 224-279 7-63 (363)
105 TIGR02524 dot_icm_DotB Dot/Icm 90.2 0.21 4.6E-06 57.4 3.2 29 253-281 133-161 (358)
106 PF13671 AAA_33: AAA domain; P 90.2 0.18 3.9E-06 49.3 2.3 23 257-279 2-24 (143)
107 cd01124 KaiC KaiC is a circadi 90.1 0.32 6.8E-06 49.9 4.2 27 256-282 1-27 (187)
108 PRK10751 molybdopterin-guanine 90.1 0.25 5.5E-06 51.0 3.3 27 255-281 7-33 (173)
109 PRK13900 type IV secretion sys 90.0 0.31 6.7E-06 55.5 4.3 26 254-279 160-185 (332)
110 cd01120 RecA-like_NTPases RecA 89.9 0.29 6.3E-06 48.1 3.6 25 257-281 2-26 (165)
111 TIGR03263 guanyl_kin guanylate 89.9 0.18 3.8E-06 51.6 2.1 24 255-278 2-25 (180)
112 COG1660 Predicted P-loop-conta 89.9 0.2 4.4E-06 54.3 2.5 19 256-274 3-21 (286)
113 PRK06217 hypothetical protein; 89.9 0.23 5E-06 51.4 2.8 23 256-278 3-25 (183)
114 PF03205 MobB: Molybdopterin g 89.7 0.29 6.3E-06 48.7 3.4 27 256-282 2-28 (140)
115 TIGR02525 plasmid_TraJ plasmid 89.7 0.25 5.4E-06 57.1 3.2 28 254-281 149-176 (372)
116 COG1125 OpuBA ABC-type proline 89.5 0.22 4.9E-06 54.0 2.5 26 255-280 28-53 (309)
117 COG1102 Cmk Cytidylate kinase 89.4 0.28 6.2E-06 49.7 3.0 23 257-279 3-25 (179)
118 PRK00411 cdc6 cell division co 89.3 0.38 8.3E-06 55.7 4.5 35 246-280 47-81 (394)
119 cd00464 SK Shikimate kinase (S 89.3 0.28 6.1E-06 48.6 2.9 23 256-278 1-23 (154)
120 PRK12402 replication factor C 89.2 0.49 1.1E-05 53.3 5.1 34 247-280 29-62 (337)
121 PRK08903 DnaA regulatory inact 89.1 0.69 1.5E-05 49.3 6.0 30 252-281 40-69 (227)
122 PRK12377 putative replication 88.8 0.66 1.4E-05 50.7 5.6 45 235-281 84-128 (248)
123 COG0572 Udk Uridine kinase [Nu 88.8 0.32 7E-06 51.8 3.1 24 256-279 10-33 (218)
124 TIGR01360 aden_kin_iso1 adenyl 88.8 0.33 7.3E-06 49.7 3.2 23 256-278 5-27 (188)
125 PRK12608 transcription termina 88.8 0.39 8.4E-06 55.3 3.9 42 239-280 118-159 (380)
126 cd02021 GntK Gluconate kinase 88.7 0.31 6.6E-06 48.4 2.7 21 257-277 2-22 (150)
127 PRK04182 cytidylate kinase; Pr 88.7 0.31 6.7E-06 49.5 2.8 23 256-278 2-24 (180)
128 COG4608 AppF ABC-type oligopep 88.4 0.3 6.6E-06 53.5 2.6 32 252-283 37-68 (268)
129 PF07475 Hpr_kinase_C: HPr Ser 88.4 0.38 8.1E-06 49.4 3.1 23 254-276 18-40 (171)
130 PRK04040 adenylate kinase; Pro 88.4 0.4 8.7E-06 50.1 3.4 26 254-279 2-27 (188)
131 TIGR02533 type_II_gspE general 88.3 0.44 9.5E-06 57.1 4.0 35 244-279 233-267 (486)
132 PRK13764 ATPase; Provisional 88.2 0.46 9.9E-06 58.1 4.2 27 254-280 257-283 (602)
133 PRK05057 aroK shikimate kinase 88.2 0.38 8.2E-06 49.4 3.1 25 254-278 4-28 (172)
134 PHA02544 44 clamp loader, smal 88.1 0.48 1E-05 53.1 4.1 35 244-278 32-67 (316)
135 COG0529 CysC Adenylylsulfate k 88.0 0.72 1.6E-05 47.6 4.8 43 239-282 9-51 (197)
136 PHA00729 NTP-binding motif con 88.0 0.76 1.7E-05 49.4 5.3 39 240-279 4-42 (226)
137 PRK14527 adenylate kinase; Pro 88.0 0.39 8.5E-06 49.9 3.1 28 252-279 4-31 (191)
138 PRK07667 uridine kinase; Provi 87.8 0.74 1.6E-05 48.1 5.0 26 255-280 18-43 (193)
139 PRK09825 idnK D-gluconate kina 87.8 0.44 9.5E-06 49.3 3.2 26 254-279 3-28 (176)
140 PRK00698 tmk thymidylate kinas 87.8 0.67 1.4E-05 48.3 4.7 28 254-281 3-30 (205)
141 cd03115 SRP The signal recogni 87.8 0.53 1.2E-05 47.9 3.8 27 256-282 2-28 (173)
142 COG0563 Adk Adenylate kinase a 87.7 0.43 9.4E-06 49.5 3.1 22 257-278 3-24 (178)
143 cd02029 PRK_like Phosphoribulo 87.7 0.48 1E-05 52.2 3.6 24 257-280 2-25 (277)
144 COG2204 AtoC Response regulato 87.5 0.64 1.4E-05 55.0 4.6 62 252-320 162-233 (464)
145 PF02367 UPF0079: Uncharacteri 87.4 0.87 1.9E-05 44.4 4.8 27 252-278 13-39 (123)
146 PF13555 AAA_29: P-loop contai 87.3 0.66 1.4E-05 39.7 3.4 21 256-276 25-45 (62)
147 PRK13894 conjugal transfer ATP 87.2 0.47 1E-05 53.8 3.3 28 254-281 148-175 (319)
148 TIGR00176 mobB molybdopterin-g 87.2 0.57 1.2E-05 47.5 3.6 26 257-282 2-27 (155)
149 COG0802 Predicted ATPase or ki 87.2 1.1 2.3E-05 45.1 5.4 30 251-280 22-51 (149)
150 PRK00440 rfc replication facto 87.2 0.96 2.1E-05 50.5 5.8 37 243-279 27-63 (319)
151 PF03193 DUF258: Protein of un 87.2 0.31 6.6E-06 49.8 1.6 26 252-277 33-58 (161)
152 PRK08727 hypothetical protein; 87.1 0.94 2E-05 48.9 5.4 32 251-282 38-69 (233)
153 cd03293 ABC_NrtD_SsuB_transpor 87.1 0.45 9.7E-06 50.6 2.9 27 252-278 28-54 (220)
154 COG1124 DppF ABC-type dipeptid 87.0 0.46 1E-05 51.2 2.9 31 252-282 31-61 (252)
155 PRK06761 hypothetical protein; 87.0 0.44 9.5E-06 53.0 2.8 26 255-280 4-29 (282)
156 PRK05416 glmZ(sRNA)-inactivati 87.0 0.45 9.8E-06 53.1 2.9 21 254-274 6-26 (288)
157 PF00625 Guanylate_kin: Guanyl 86.9 0.5 1.1E-05 48.8 3.0 25 255-279 3-27 (183)
158 TIGR01359 UMP_CMP_kin_fam UMP- 86.9 0.49 1.1E-05 48.5 3.0 23 257-279 2-24 (183)
159 PRK14732 coaE dephospho-CoA ki 86.9 0.38 8.2E-06 50.6 2.2 48 257-304 2-54 (196)
160 PF07728 AAA_5: AAA domain (dy 86.8 0.52 1.1E-05 46.1 3.0 23 256-278 1-23 (139)
161 TIGR01166 cbiO cobalt transpor 86.8 0.5 1.1E-05 49.0 3.0 26 252-277 16-41 (190)
162 PRK14964 DNA polymerase III su 86.8 0.74 1.6E-05 55.1 4.8 54 225-281 5-62 (491)
163 COG1493 HprK Serine kinase of 86.7 0.53 1.2E-05 52.1 3.2 28 254-281 145-172 (308)
164 TIGR00960 3a0501s02 Type II (G 86.6 0.5 1.1E-05 50.0 2.9 27 252-278 27-53 (216)
165 TIGR02673 FtsE cell division A 86.6 0.5 1.1E-05 49.8 3.0 27 252-278 26-52 (214)
166 PRK15093 antimicrobial peptide 86.5 0.49 1.1E-05 53.8 3.0 27 252-278 31-57 (330)
167 cd03259 ABC_Carb_Solutes_like 86.4 0.54 1.2E-05 49.6 3.1 27 252-278 24-50 (213)
168 TIGR03499 FlhF flagellar biosy 86.4 0.66 1.4E-05 51.6 3.9 29 253-281 193-221 (282)
169 PF13604 AAA_30: AAA domain; P 86.4 0.97 2.1E-05 47.5 5.0 39 243-282 8-46 (196)
170 COG1123 ATPase components of v 86.4 0.4 8.6E-06 57.5 2.2 29 252-280 315-343 (539)
171 TIGR00455 apsK adenylylsulfate 86.4 0.89 1.9E-05 46.9 4.6 29 252-280 16-44 (184)
172 PF00005 ABC_tran: ABC transpo 86.4 0.42 9.1E-06 46.4 2.0 27 253-279 10-36 (137)
173 PRK15177 Vi polysaccharide exp 86.3 0.53 1.2E-05 50.0 3.0 28 252-279 11-38 (213)
174 TIGR02788 VirB11 P-type DNA tr 86.3 0.41 8.9E-06 53.9 2.2 26 254-279 144-169 (308)
175 PRK11308 dppF dipeptide transp 86.3 0.51 1.1E-05 53.6 3.0 27 252-278 39-65 (327)
176 COG4172 ABC-type uncharacteriz 86.3 0.42 9E-06 54.9 2.2 28 254-281 36-63 (534)
177 cd03225 ABC_cobalt_CbiO_domain 86.2 0.57 1.2E-05 49.3 3.1 27 252-278 25-51 (211)
178 PRK14974 cell division protein 86.2 1.2 2.7E-05 50.8 6.0 31 252-282 138-168 (336)
179 PRK15453 phosphoribulokinase; 86.2 0.62 1.4E-05 51.7 3.5 27 253-279 4-30 (290)
180 PRK13342 recombination factor 86.2 0.78 1.7E-05 53.8 4.6 43 235-278 18-60 (413)
181 PRK08356 hypothetical protein; 86.2 0.49 1.1E-05 49.5 2.6 22 255-276 6-27 (195)
182 PRK06893 DNA replication initi 86.2 1.2 2.6E-05 47.9 5.6 45 235-281 22-66 (229)
183 cd03260 ABC_PstB_phosphate_tra 86.2 0.57 1.2E-05 50.0 3.1 27 252-278 24-50 (227)
184 PF00308 Bac_DnaA: Bacterial d 86.1 1.3 2.8E-05 47.5 5.8 43 240-282 18-62 (219)
185 COG1123 ATPase components of v 86.1 0.42 9.1E-06 57.3 2.2 30 252-281 33-62 (539)
186 PRK14956 DNA polymerase III su 86.1 0.94 2E-05 53.9 5.0 53 225-281 10-67 (484)
187 cd03255 ABC_MJ0796_Lo1CDE_FtsE 86.0 0.57 1.2E-05 49.6 3.0 27 252-278 28-54 (218)
188 TIGR02902 spore_lonB ATP-depen 85.9 0.92 2E-05 55.0 5.1 31 249-279 81-111 (531)
189 PRK09473 oppD oligopeptide tra 85.9 0.51 1.1E-05 53.7 2.8 27 252-278 40-66 (330)
190 cd03116 MobB Molybdenum is an 85.9 0.83 1.8E-05 46.5 4.0 28 255-282 2-29 (159)
191 COG2884 FtsE Predicted ATPase 85.9 0.57 1.2E-05 48.9 2.7 26 253-278 27-52 (223)
192 PRK09112 DNA polymerase III su 85.9 1.1 2.3E-05 51.7 5.3 41 240-280 30-71 (351)
193 TIGR02868 CydC thiol reductant 85.9 0.39 8.4E-06 58.1 1.8 29 252-280 359-387 (529)
194 COG4172 ABC-type uncharacteriz 85.9 0.47 1E-05 54.5 2.3 30 252-281 311-340 (534)
195 TIGR03608 L_ocin_972_ABC putat 85.8 0.58 1.3E-05 49.0 3.0 27 252-278 22-48 (206)
196 PRK03839 putative kinase; Prov 85.8 0.63 1.4E-05 47.8 3.1 23 256-278 2-24 (180)
197 PRK15079 oligopeptide ABC tran 85.8 0.56 1.2E-05 53.5 3.0 27 252-278 45-71 (331)
198 cd03292 ABC_FtsE_transporter F 85.8 0.59 1.3E-05 49.2 3.0 27 252-278 25-51 (214)
199 cd01983 Fer4_NifH The Fer4_Nif 85.8 0.85 1.8E-05 40.6 3.6 26 257-282 2-27 (99)
200 PHA02530 pseT polynucleotide k 85.8 0.58 1.3E-05 52.1 3.1 25 254-278 2-26 (300)
201 PRK06645 DNA polymerase III su 85.8 0.98 2.1E-05 54.4 5.1 45 234-281 26-70 (507)
202 cd03229 ABC_Class3 This class 85.7 0.63 1.4E-05 47.8 3.0 27 252-278 24-50 (178)
203 TIGR00152 dephospho-CoA kinase 85.6 0.61 1.3E-05 48.4 2.9 46 257-302 2-53 (188)
204 TIGR02881 spore_V_K stage V sp 85.6 0.72 1.6E-05 50.5 3.7 30 253-282 41-70 (261)
205 PRK14531 adenylate kinase; Pro 85.6 0.71 1.5E-05 47.7 3.4 24 255-278 3-26 (183)
206 cd03296 ABC_CysA_sulfate_impor 85.6 0.61 1.3E-05 50.3 3.0 27 252-278 26-52 (239)
207 cd03258 ABC_MetN_methionine_tr 85.6 0.45 9.7E-06 51.0 2.0 28 252-279 29-56 (233)
208 PRK14528 adenylate kinase; Pro 85.5 0.71 1.5E-05 48.0 3.4 24 255-278 2-25 (186)
209 PRK10416 signal recognition pa 85.5 0.85 1.9E-05 51.7 4.2 31 252-282 112-142 (318)
210 PRK08116 hypothetical protein; 85.5 1.3 2.9E-05 48.9 5.7 47 235-281 94-141 (268)
211 PLN03025 replication factor C 85.4 1.1 2.4E-05 50.6 5.2 36 244-279 24-59 (319)
212 cd01672 TMPK Thymidine monopho 85.4 0.78 1.7E-05 47.1 3.6 24 257-280 3-26 (200)
213 TIGR03574 selen_PSTK L-seryl-t 85.4 0.66 1.4E-05 50.4 3.2 24 257-280 2-25 (249)
214 PF04665 Pox_A32: Poxvirus A32 85.3 0.65 1.4E-05 50.4 3.0 27 254-280 13-39 (241)
215 TIGR00678 holB DNA polymerase 85.3 1.2 2.7E-05 46.0 5.0 37 245-281 4-41 (188)
216 cd02034 CooC The accessory pro 85.2 0.88 1.9E-05 43.8 3.6 26 257-282 2-27 (116)
217 cd03224 ABC_TM1139_LivF_branch 85.2 0.68 1.5E-05 49.1 3.1 27 252-278 24-50 (222)
218 PLN02318 phosphoribulokinase/u 85.2 1 2.2E-05 54.7 4.8 44 235-278 45-89 (656)
219 PRK11022 dppD dipeptide transp 85.2 0.61 1.3E-05 53.0 2.9 27 252-278 31-57 (326)
220 cd03235 ABC_Metallic_Cations A 85.2 0.61 1.3E-05 49.2 2.7 27 252-278 23-49 (213)
221 PRK14962 DNA polymerase III su 85.1 1.1 2.3E-05 53.7 4.9 52 225-280 6-62 (472)
222 cd03297 ABC_ModC_molybdenum_tr 85.0 0.71 1.5E-05 48.8 3.1 26 252-278 22-47 (214)
223 PRK09111 DNA polymerase III su 85.0 0.93 2E-05 55.7 4.5 37 245-281 36-73 (598)
224 TIGR03864 PQQ_ABC_ATP ABC tran 84.9 0.68 1.5E-05 49.7 3.0 27 252-278 25-51 (236)
225 TIGR00064 ftsY signal recognit 84.9 1.6 3.6E-05 48.3 6.1 46 237-282 46-100 (272)
226 cd02026 PRK Phosphoribulokinas 84.9 0.68 1.5E-05 51.3 3.0 22 257-278 2-23 (273)
227 cd03256 ABC_PhnC_transporter A 84.8 0.68 1.5E-05 49.7 3.0 27 252-278 25-51 (241)
228 PRK14957 DNA polymerase III su 84.8 1.1 2.4E-05 54.3 5.0 53 224-280 7-64 (546)
229 PRK04220 2-phosphoglycerate ki 84.8 1.1 2.3E-05 50.4 4.5 28 251-278 89-116 (301)
230 PRK05428 HPr kinase/phosphoryl 84.8 0.71 1.5E-05 51.8 3.1 24 254-277 146-169 (308)
231 COG2805 PilT Tfp pilus assembl 84.8 0.74 1.6E-05 51.1 3.2 79 191-281 66-152 (353)
232 COG2274 SunT ABC-type bacterio 84.7 0.6 1.3E-05 58.3 2.8 29 253-281 498-526 (709)
233 TIGR02315 ABC_phnC phosphonate 84.7 0.7 1.5E-05 49.8 3.0 27 252-278 26-52 (243)
234 PRK13768 GTPase; Provisional 84.7 0.86 1.9E-05 49.9 3.7 27 256-282 4-30 (253)
235 cd03268 ABC_BcrA_bacitracin_re 84.7 0.74 1.6E-05 48.4 3.1 27 252-278 24-50 (208)
236 PRK10646 ADP-binding protein; 84.6 1.7 3.8E-05 43.9 5.5 26 254-279 28-53 (153)
237 PRK10436 hypothetical protein; 84.6 0.68 1.5E-05 55.1 3.1 36 244-280 209-244 (462)
238 PRK11176 lipid transporter ATP 84.6 0.58 1.3E-05 57.2 2.5 30 252-281 367-396 (582)
239 PF12774 AAA_6: Hydrolytic ATP 84.6 0.92 2E-05 49.1 3.8 42 239-280 16-58 (231)
240 cd03265 ABC_DrrA DrrA is the A 84.4 0.76 1.6E-05 48.8 3.0 26 252-277 24-49 (220)
241 cd03269 ABC_putative_ATPase Th 84.4 0.77 1.7E-05 48.3 3.1 27 252-278 24-50 (210)
242 PRK11124 artP arginine transpo 84.4 0.75 1.6E-05 49.6 3.0 26 252-277 26-51 (242)
243 cd03266 ABC_NatA_sodium_export 84.4 0.76 1.6E-05 48.6 3.0 26 252-277 29-54 (218)
244 cd03219 ABC_Mj1267_LivG_branch 84.3 0.72 1.6E-05 49.4 2.8 27 252-278 24-50 (236)
245 smart00072 GuKc Guanylate kina 84.3 0.74 1.6E-05 47.7 2.8 23 256-278 4-26 (184)
246 TIGR02880 cbbX_cfxQ probable R 84.3 0.86 1.9E-05 50.8 3.5 27 256-282 60-86 (284)
247 PRK02496 adk adenylate kinase; 84.3 0.82 1.8E-05 47.1 3.2 22 257-278 4-25 (184)
248 cd03262 ABC_HisP_GlnQ_permease 84.2 0.78 1.7E-05 48.3 3.0 27 252-278 24-50 (213)
249 PLN02796 D-glycerate 3-kinase 84.2 0.77 1.7E-05 52.4 3.1 25 255-279 101-125 (347)
250 KOG0922 DEAH-box RNA helicase 84.2 2 4.3E-05 52.2 6.6 100 252-356 64-179 (674)
251 cd03226 ABC_cobalt_CbiO_domain 84.2 0.76 1.6E-05 48.2 2.9 27 252-278 24-50 (205)
252 cd03223 ABCD_peroxisomal_ALDP 84.2 0.8 1.7E-05 46.6 3.0 28 252-279 25-52 (166)
253 TIGR01184 ntrCD nitrate transp 84.2 0.78 1.7E-05 49.2 3.0 28 252-279 9-36 (230)
254 PRK00023 cmk cytidylate kinase 84.1 0.83 1.8E-05 49.1 3.2 26 254-279 4-29 (225)
255 cd03230 ABC_DR_subfamily_A Thi 84.1 0.82 1.8E-05 46.8 3.0 27 252-278 24-50 (173)
256 KOG0744 AAA+-type ATPase [Post 84.1 1.7 3.7E-05 48.8 5.5 47 235-281 152-204 (423)
257 COG4619 ABC-type uncharacteriz 84.1 0.76 1.6E-05 47.1 2.6 24 253-276 28-51 (223)
258 PRK10908 cell division protein 84.0 0.8 1.7E-05 48.7 3.0 27 252-278 26-52 (222)
259 TIGR00972 3a0107s01c2 phosphat 84.0 0.78 1.7E-05 49.6 3.0 27 252-278 25-51 (247)
260 PRK13539 cytochrome c biogenes 84.0 0.81 1.8E-05 48.2 3.0 27 252-278 26-52 (207)
261 PRK14734 coaE dephospho-CoA ki 84.0 0.71 1.5E-05 48.7 2.6 49 256-304 3-56 (200)
262 PRK08972 fliI flagellum-specif 83.9 2 4.4E-05 50.6 6.4 40 237-276 145-184 (444)
263 TIGR01978 sufC FeS assembly AT 83.9 0.78 1.7E-05 49.3 2.9 26 252-277 24-49 (243)
264 cd03245 ABCC_bacteriocin_expor 83.9 0.8 1.7E-05 48.5 3.0 27 252-278 28-54 (220)
265 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.8 0.89 1.9E-05 47.7 3.2 26 256-281 40-65 (205)
266 PRK05342 clpX ATP-dependent pr 83.8 1.4 3E-05 51.8 5.1 25 254-278 108-132 (412)
267 PRK14963 DNA polymerase III su 83.8 1.1 2.4E-05 53.9 4.5 45 234-281 19-63 (504)
268 PF01637 Arch_ATPase: Archaeal 83.8 0.74 1.6E-05 48.3 2.6 33 246-278 12-44 (234)
269 TIGR03238 dnd_assoc_3 dnd syst 83.8 1 2.3E-05 53.3 4.0 37 236-272 9-50 (504)
270 PF00448 SRP54: SRP54-type pro 83.7 1 2.2E-05 47.5 3.6 28 254-281 1-28 (196)
271 PRK08533 flagellar accessory p 83.7 1.5 3.2E-05 47.4 4.9 28 253-280 23-50 (230)
272 PRK13695 putative NTPase; Prov 83.7 0.94 2E-05 46.3 3.3 24 257-280 3-26 (174)
273 PRK10584 putative ABC transpor 83.7 0.84 1.8E-05 48.7 3.0 27 252-278 34-60 (228)
274 TIGR03410 urea_trans_UrtE urea 83.6 0.82 1.8E-05 48.8 2.9 28 252-279 24-51 (230)
275 COG1428 Deoxynucleoside kinase 83.6 0.98 2.1E-05 47.9 3.4 44 254-302 4-47 (216)
276 TIGR02211 LolD_lipo_ex lipopro 83.6 0.85 1.9E-05 48.3 3.0 27 252-278 29-55 (221)
277 PF00158 Sigma54_activat: Sigm 83.6 0.77 1.7E-05 47.2 2.6 25 252-276 20-44 (168)
278 PRK03731 aroL shikimate kinase 83.6 0.96 2.1E-05 45.9 3.3 25 255-279 3-27 (171)
279 cd03270 ABC_UvrA_I The excisio 83.6 0.85 1.9E-05 48.9 3.0 24 252-275 19-42 (226)
280 PRK14969 DNA polymerase III su 83.5 1.3 2.8E-05 53.7 4.9 43 234-280 21-64 (527)
281 TIGR02640 gas_vesic_GvpN gas v 83.5 1.4 3E-05 48.5 4.7 40 235-277 5-44 (262)
282 PF13173 AAA_14: AAA domain 83.5 1 2.2E-05 43.7 3.3 26 254-279 2-27 (128)
283 cd03301 ABC_MalK_N The N-termi 83.5 0.88 1.9E-05 47.9 3.1 27 252-278 24-50 (213)
284 PLN02348 phosphoribulokinase 83.5 1.4 3E-05 51.1 4.8 29 252-280 47-75 (395)
285 cd03218 ABC_YhbG The ABC trans 83.5 0.88 1.9E-05 48.6 3.1 27 252-278 24-50 (232)
286 TIGR02903 spore_lon_C ATP-depe 83.4 1.3 2.9E-05 54.7 5.0 35 246-280 167-201 (615)
287 PF01695 IstB_IS21: IstB-like 83.4 1.2 2.5E-05 46.3 3.8 30 252-281 45-74 (178)
288 PRK05973 replicative DNA helic 83.4 1.3 2.9E-05 48.0 4.4 31 252-282 62-92 (237)
289 cd03294 ABC_Pro_Gly_Bertaine T 83.4 0.85 1.8E-05 50.2 3.0 27 252-278 48-74 (269)
290 cd03238 ABC_UvrA The excision 83.3 0.92 2E-05 47.0 3.0 24 252-275 19-42 (176)
291 PRK11248 tauB taurine transpor 83.2 0.88 1.9E-05 49.7 3.0 27 252-278 25-51 (255)
292 PRK11629 lolD lipoprotein tran 83.2 0.89 1.9E-05 48.7 3.0 27 252-278 33-59 (233)
293 PRK13541 cytochrome c biogenes 83.2 0.92 2E-05 47.3 3.0 27 252-278 24-50 (195)
294 PRK14242 phosphate transporter 83.2 0.86 1.9E-05 49.5 2.9 27 252-278 30-56 (253)
295 COG0630 VirB11 Type IV secreto 83.2 1.1 2.4E-05 50.6 3.9 39 241-280 131-169 (312)
296 cd03234 ABCG_White The White s 83.1 0.96 2.1E-05 48.3 3.2 28 252-279 31-58 (226)
297 TIGR02770 nickel_nikD nickel i 83.1 0.88 1.9E-05 48.7 2.9 27 252-278 10-36 (230)
298 PRK06620 hypothetical protein; 83.1 1.6 3.5E-05 46.6 4.9 20 255-274 45-64 (214)
299 TIGR00679 hpr-ser Hpr(Ser) kin 83.0 0.9 2E-05 50.8 3.0 24 254-277 146-169 (304)
300 cd03298 ABC_ThiQ_thiamine_tran 82.9 0.93 2E-05 47.7 3.0 27 252-278 22-48 (211)
301 PRK14530 adenylate kinase; Pro 82.9 0.98 2.1E-05 47.9 3.2 24 256-279 5-28 (215)
302 PRK13645 cbiO cobalt transport 82.9 0.86 1.9E-05 50.7 2.8 27 252-278 35-61 (289)
303 PRK06067 flagellar accessory p 82.9 1.5 3.2E-05 47.2 4.5 28 253-280 24-51 (234)
304 cd03222 ABC_RNaseL_inhibitor T 82.9 0.91 2E-05 47.0 2.8 28 252-279 23-50 (177)
305 PF06414 Zeta_toxin: Zeta toxi 82.9 1.1 2.3E-05 47.1 3.3 30 250-279 11-40 (199)
306 PF13479 AAA_24: AAA domain 82.9 0.82 1.8E-05 48.6 2.5 22 253-274 2-23 (213)
307 COG2804 PulE Type II secretory 82.9 0.95 2.1E-05 53.6 3.2 40 241-281 246-285 (500)
308 cd03237 ABC_RNaseL_inhibitor_d 82.8 0.94 2E-05 49.3 3.0 26 253-278 24-49 (246)
309 TIGR00017 cmk cytidylate kinas 82.8 1.1 2.3E-05 48.1 3.4 24 256-279 4-27 (217)
310 cd03261 ABC_Org_Solvent_Resist 82.8 0.95 2E-05 48.6 3.0 27 252-278 24-50 (235)
311 PRK13538 cytochrome c biogenes 82.8 0.97 2.1E-05 47.5 3.0 27 252-278 25-51 (204)
312 COG1618 Predicted nucleotide k 82.8 1.1 2.4E-05 45.7 3.1 53 255-337 6-58 (179)
313 TIGR02858 spore_III_AA stage I 82.8 1.1 2.4E-05 49.6 3.6 41 240-280 97-137 (270)
314 PRK13540 cytochrome c biogenes 82.8 0.98 2.1E-05 47.3 3.0 27 252-278 25-51 (200)
315 TIGR00635 ruvB Holliday juncti 82.8 1.5 3.2E-05 48.9 4.7 27 252-278 28-54 (305)
316 PRK09435 membrane ATPase/prote 82.8 2.2 4.8E-05 48.6 6.0 31 251-281 53-83 (332)
317 PRK14247 phosphate ABC transpo 82.8 0.94 2E-05 49.1 3.0 27 252-278 27-53 (250)
318 PRK13947 shikimate kinase; Pro 82.7 1.1 2.4E-05 45.4 3.3 23 256-278 3-25 (171)
319 cd03267 ABC_NatA_like Similar 82.7 0.94 2E-05 48.8 2.9 27 252-278 45-71 (236)
320 TIGR02538 type_IV_pilB type IV 82.7 0.89 1.9E-05 55.6 3.1 26 254-279 316-341 (564)
321 TIGR02746 TraC-F-type type-IV 82.7 1.3 2.9E-05 56.3 4.8 50 253-302 429-478 (797)
322 PRK14959 DNA polymerase III su 82.6 1.5 3.2E-05 53.9 4.8 53 224-280 7-64 (624)
323 PRK04328 hypothetical protein; 82.6 1.6 3.4E-05 47.7 4.6 35 245-279 12-48 (249)
324 PRK14950 DNA polymerase III su 82.5 1.5 3.3E-05 53.8 5.0 45 234-281 21-65 (585)
325 PRK08154 anaerobic benzoate ca 82.5 1.6 3.4E-05 49.3 4.8 42 237-278 116-157 (309)
326 PRK10247 putative ABC transpor 82.5 1 2.2E-05 48.2 3.0 27 252-278 31-57 (225)
327 TIGR03877 thermo_KaiC_1 KaiC d 82.5 1.7 3.7E-05 46.9 4.8 28 253-280 20-47 (237)
328 TIGR00101 ureG urease accessor 82.5 1.2 2.5E-05 47.1 3.5 26 255-280 2-27 (199)
329 cd03247 ABCC_cytochrome_bd The 82.5 1 2.2E-05 46.2 3.0 27 252-278 26-52 (178)
330 PRK11247 ssuB aliphatic sulfon 82.5 0.97 2.1E-05 49.6 3.0 28 252-279 36-63 (257)
331 PRK05439 pantothenate kinase; 82.5 1.9 4.2E-05 48.6 5.4 31 251-281 83-113 (311)
332 cd03257 ABC_NikE_OppD_transpor 82.5 0.96 2.1E-05 48.1 2.9 27 252-278 29-55 (228)
333 PRK14251 phosphate ABC transpo 82.4 0.99 2.1E-05 48.9 3.0 27 252-278 28-54 (251)
334 PRK14248 phosphate ABC transpo 82.4 0.99 2.1E-05 49.6 3.0 27 252-278 45-71 (268)
335 TIGR00041 DTMP_kinase thymidyl 82.4 1.2 2.7E-05 46.0 3.6 27 254-280 3-29 (195)
336 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 82.4 0.98 2.1E-05 48.3 2.9 27 252-278 46-72 (224)
337 COG1136 SalX ABC-type antimicr 82.4 0.91 2E-05 48.8 2.6 22 253-274 30-51 (226)
338 cd03232 ABC_PDR_domain2 The pl 82.3 1 2.2E-05 46.9 2.9 25 252-276 31-55 (192)
339 cd03214 ABC_Iron-Siderophores_ 82.3 1.1 2.3E-05 46.2 3.0 27 252-278 23-49 (180)
340 PRK14731 coaE dephospho-CoA ki 82.3 0.88 1.9E-05 48.2 2.5 22 256-277 7-28 (208)
341 cd01394 radB RadB. The archaea 82.3 1.5 3.3E-05 46.4 4.3 37 245-281 8-46 (218)
342 PRK09087 hypothetical protein; 82.3 1.7 3.7E-05 46.8 4.7 24 253-276 43-66 (226)
343 TIGR02237 recomb_radB DNA repa 82.2 1.5 3.2E-05 46.1 4.2 29 253-281 11-39 (209)
344 cd03250 ABCC_MRP_domain1 Domai 82.2 1 2.3E-05 47.1 3.0 27 252-278 29-55 (204)
345 PRK04195 replication factor C 82.2 1.3 2.9E-05 53.0 4.2 27 252-278 37-63 (482)
346 CHL00081 chlI Mg-protoporyphyr 82.1 1.6 3.5E-05 50.1 4.6 30 251-280 35-64 (350)
347 cd03263 ABC_subfamily_A The AB 82.1 1.1 2.3E-05 47.6 3.0 27 252-278 26-52 (220)
348 PRK10419 nikE nickel transport 82.1 1 2.2E-05 49.6 2.9 25 252-276 36-60 (268)
349 PF14532 Sigma54_activ_2: Sigm 82.1 0.61 1.3E-05 45.9 1.1 25 252-276 19-43 (138)
350 PRK14955 DNA polymerase III su 82.0 1.9 4.1E-05 50.4 5.3 37 244-280 27-64 (397)
351 cd03254 ABCC_Glucan_exporter_l 82.0 1 2.3E-05 47.9 3.0 27 252-278 27-53 (229)
352 TIGR02203 MsbA_lipidA lipid A 82.0 0.86 1.9E-05 55.5 2.6 31 252-282 356-386 (571)
353 TIGR01277 thiQ thiamine ABC tr 82.0 1 2.3E-05 47.5 2.9 27 252-278 22-48 (213)
354 PRK09493 glnQ glutamine ABC tr 81.9 1.1 2.3E-05 48.3 3.0 27 252-278 25-51 (240)
355 cd03215 ABC_Carb_Monos_II This 81.9 1.1 2.3E-05 46.3 2.9 27 252-278 24-50 (182)
356 TIGR03881 KaiC_arch_4 KaiC dom 81.9 1.8 4E-05 46.1 4.8 28 253-280 19-46 (229)
357 COG1126 GlnQ ABC-type polar am 81.8 1.1 2.4E-05 47.8 2.9 23 252-274 26-48 (240)
358 PRK07429 phosphoribulokinase; 81.8 1.1 2.3E-05 51.2 3.0 26 253-278 7-32 (327)
359 TIGR02323 CP_lyasePhnK phospho 81.8 1 2.3E-05 48.8 2.9 27 252-278 27-53 (253)
360 cd00046 DEXDc DEAD-like helica 81.8 1.3 2.8E-05 41.6 3.3 26 256-281 2-27 (144)
361 PF12775 AAA_7: P-loop contain 81.8 2.3 4.9E-05 47.2 5.5 41 235-276 15-55 (272)
362 cd03252 ABCC_Hemolysin The ABC 81.7 1.1 2.3E-05 48.2 2.9 28 252-279 26-53 (237)
363 PRK13648 cbiO cobalt transport 81.7 1.1 2.4E-05 49.3 3.0 27 252-278 33-59 (269)
364 TIGR00968 3a0106s01 sulfate AB 81.7 1.1 2.4E-05 48.2 3.0 27 252-278 24-50 (237)
365 PF06745 KaiC: KaiC; InterPro 81.6 1.4 2.9E-05 47.1 3.7 28 253-280 18-45 (226)
366 PRK14250 phosphate ABC transpo 81.6 1.1 2.4E-05 48.4 3.0 27 252-278 27-53 (241)
367 TIGR03005 ectoine_ehuA ectoine 81.6 1.1 2.4E-05 48.7 3.0 27 252-278 24-50 (252)
368 cd03283 ABC_MutS-like MutS-lik 81.6 1 2.2E-05 47.5 2.6 22 254-275 25-46 (199)
369 PRK13657 cyclic beta-1,2-gluca 81.6 0.8 1.7E-05 56.2 2.1 30 252-281 359-388 (588)
370 cd03290 ABCC_SUR1_N The SUR do 81.6 1.1 2.4E-05 47.4 3.0 27 252-278 25-51 (218)
371 TIGR01189 ccmA heme ABC export 81.5 1.2 2.6E-05 46.5 3.1 27 252-278 24-50 (198)
372 cd03236 ABC_RNaseL_inhibitor_d 81.5 0.84 1.8E-05 50.0 2.0 38 246-283 18-55 (255)
373 PRK14267 phosphate ABC transpo 81.5 1.1 2.4E-05 48.6 3.0 27 252-278 28-54 (253)
374 PTZ00112 origin recognition co 81.4 2.3 5E-05 53.7 5.9 38 244-281 770-808 (1164)
375 PRK06526 transposase; Provisio 81.4 1.3 2.8E-05 48.6 3.5 30 253-282 97-126 (254)
376 PRK10744 pstB phosphate transp 81.4 1.1 2.4E-05 49.0 2.9 27 252-278 37-63 (260)
377 cd03295 ABC_OpuCA_Osmoprotecti 81.4 1.1 2.5E-05 48.2 3.0 26 252-277 25-50 (242)
378 cd03246 ABCC_Protease_Secretio 81.4 1.2 2.6E-05 45.5 3.0 27 252-278 26-52 (173)
379 PRK14730 coaE dephospho-CoA ki 81.4 1.4 3E-05 46.4 3.5 47 257-304 4-57 (195)
380 PRK01184 hypothetical protein; 81.4 1.1 2.4E-05 46.1 2.8 18 256-273 3-20 (184)
381 PRK11264 putative amino-acid A 81.4 1.1 2.5E-05 48.4 3.0 27 252-278 27-53 (250)
382 PRK11300 livG leucine/isoleuci 81.3 1.2 2.5E-05 48.4 3.1 27 252-278 29-55 (255)
383 KOG0924 mRNA splicing factor A 81.3 1.2 2.5E-05 54.1 3.1 120 251-374 368-503 (1042)
384 PRK14238 phosphate transporter 81.3 1.1 2.4E-05 49.3 3.0 28 252-279 48-75 (271)
385 TIGR03878 thermo_KaiC_2 KaiC d 81.3 1.5 3.3E-05 48.1 4.0 29 253-281 35-63 (259)
386 TIGR02204 MsbA_rel ABC transpo 81.3 0.97 2.1E-05 55.2 2.7 29 252-280 364-392 (576)
387 cd03112 CobW_like The function 81.3 1.1 2.3E-05 45.4 2.6 21 257-277 3-23 (158)
388 TIGR02324 CP_lyasePhnL phospho 81.3 1.2 2.5E-05 47.5 3.0 27 252-278 32-58 (224)
389 cd03231 ABC_CcmA_heme_exporter 81.3 1.2 2.5E-05 46.8 3.0 27 252-278 24-50 (201)
390 cd03216 ABC_Carb_Monos_I This 81.2 1.2 2.6E-05 45.2 2.9 27 252-278 24-50 (163)
391 cd03213 ABCG_EPDR ABCG transpo 81.2 1.2 2.6E-05 46.5 3.0 27 252-278 33-59 (194)
392 PRK14273 phosphate ABC transpo 81.1 1.2 2.5E-05 48.5 3.0 27 252-278 31-57 (254)
393 cd03244 ABCC_MRP_domain2 Domai 81.1 1.2 2.6E-05 47.2 3.0 27 252-278 28-54 (221)
394 cd03228 ABCC_MRP_Like The MRP 81.1 1.2 2.7E-05 45.3 3.0 27 252-278 26-52 (171)
395 PRK10418 nikD nickel transport 81.1 1.2 2.5E-05 48.6 3.0 27 252-278 27-53 (254)
396 KOG4427 E3 ubiquitin protein l 81.1 3.6 7.9E-05 50.2 7.1 22 894-915 30-51 (1096)
397 PRK14240 phosphate transporter 81.0 1.2 2.6E-05 48.3 3.0 26 252-277 27-52 (250)
398 cd03233 ABC_PDR_domain1 The pl 81.0 1.2 2.6E-05 46.8 2.9 28 252-279 31-58 (202)
399 PRK13946 shikimate kinase; Pro 81.0 1.3 2.7E-05 46.0 3.0 26 253-278 9-34 (184)
400 PRK11174 cysteine/glutathione 81.0 0.86 1.9E-05 55.8 2.1 27 252-278 374-400 (588)
401 PRK10771 thiQ thiamine transpo 81.0 1.2 2.6E-05 47.8 2.9 27 252-278 23-49 (232)
402 PRK00625 shikimate kinase; Pro 80.9 1.3 2.9E-05 45.6 3.1 24 256-279 2-25 (173)
403 PF03215 Rad17: Rad17 cell cyc 80.9 1.9 4.1E-05 52.1 4.9 37 243-279 33-70 (519)
404 PRK13632 cbiO cobalt transport 80.9 1.2 2.6E-05 49.1 3.0 27 252-278 33-59 (271)
405 PRK13543 cytochrome c biogenes 80.9 1.2 2.6E-05 47.1 2.9 27 252-278 35-61 (214)
406 PRK07952 DNA replication prote 80.8 1.9 4.2E-05 47.0 4.5 29 254-282 99-127 (244)
407 TIGR03740 galliderm_ABC gallid 80.8 1.3 2.8E-05 47.2 3.1 27 252-278 24-50 (223)
408 PRK09544 znuC high-affinity zi 80.7 1.2 2.7E-05 48.5 3.0 27 252-278 28-54 (251)
409 PRK14269 phosphate ABC transpo 80.7 1.2 2.7E-05 48.1 3.0 26 252-277 26-51 (246)
410 PRK14493 putative bifunctional 80.7 1.5 3.2E-05 48.7 3.6 27 256-282 3-29 (274)
411 PRK10790 putative multidrug tr 80.6 0.9 2E-05 55.7 2.1 29 252-280 365-393 (592)
412 TIGR01288 nodI ATP-binding ABC 80.6 1.2 2.7E-05 49.8 3.0 27 252-278 28-54 (303)
413 KOG0056 Heavy metal exporter H 80.6 1.4 3.1E-05 51.7 3.4 32 253-284 563-594 (790)
414 cd03221 ABCF_EF-3 ABCF_EF-3 E 80.5 1.3 2.7E-05 44.1 2.8 27 252-278 24-50 (144)
415 cd03249 ABC_MTABC3_MDL1_MDL2 M 80.5 1.2 2.7E-05 47.8 2.9 27 252-278 27-53 (238)
416 PRK05537 bifunctional sulfate 80.5 1.3 2.9E-05 54.0 3.5 44 235-280 375-418 (568)
417 COG4107 PhnK ABC-type phosphon 80.5 0.75 1.6E-05 47.3 1.1 27 254-280 32-58 (258)
418 PRK14274 phosphate ABC transpo 80.5 1.3 2.8E-05 48.4 3.0 27 252-278 36-62 (259)
419 cd01428 ADK Adenylate kinase ( 80.5 1.3 2.8E-05 45.6 2.9 22 257-278 2-23 (194)
420 PRK13646 cbiO cobalt transport 80.4 1.2 2.7E-05 49.5 2.9 27 252-278 31-57 (286)
421 PRK14255 phosphate ABC transpo 80.4 1.3 2.7E-05 48.1 3.0 25 252-276 29-53 (252)
422 PRK14958 DNA polymerase III su 80.4 2 4.4E-05 51.8 5.0 53 224-280 7-64 (509)
423 PRK13638 cbiO cobalt transport 80.4 1.2 2.6E-05 49.0 2.8 27 252-278 25-51 (271)
424 PRK10575 iron-hydroxamate tran 80.4 1.2 2.6E-05 48.9 2.7 27 252-278 35-61 (265)
425 PRK10619 histidine/lysine/argi 80.4 1.3 2.8E-05 48.3 3.0 27 252-278 29-55 (257)
426 TIGR00382 clpX endopeptidase C 80.4 2.1 4.5E-05 50.3 4.8 24 255-278 117-140 (413)
427 cd03217 ABC_FeS_Assembly ABC-t 80.3 1.3 2.9E-05 46.4 3.0 26 252-277 24-49 (200)
428 PRK14263 phosphate ABC transpo 80.3 1.3 2.8E-05 48.6 3.0 27 252-278 32-58 (261)
429 PRK14239 phosphate transporter 80.2 1.3 2.8E-05 48.0 3.0 26 252-277 29-54 (252)
430 cd00879 Sar1 Sar1 subfamily. 80.2 2.4 5.2E-05 43.4 4.8 40 236-275 1-40 (190)
431 TIGR03771 anch_rpt_ABC anchore 80.2 1.3 2.9E-05 47.2 3.0 26 253-278 5-30 (223)
432 PF13177 DNA_pol3_delta2: DNA 80.2 2.8 6E-05 42.7 5.1 33 250-282 15-47 (162)
433 cd03369 ABCC_NFT1 Domain 2 of 80.2 1.4 2.9E-05 46.4 3.0 28 252-279 32-59 (207)
434 cd03248 ABCC_TAP TAP, the Tran 80.1 1.3 2.9E-05 47.0 3.0 27 252-278 38-64 (226)
435 PRK11701 phnK phosphonate C-P 80.1 1.3 2.8E-05 48.3 2.9 27 252-278 30-56 (258)
436 PRK00279 adk adenylate kinase; 80.1 1.4 3.1E-05 46.7 3.1 24 256-279 2-25 (215)
437 cd04155 Arl3 Arl3 subfamily. 80.0 1.8 4E-05 43.4 3.8 31 245-275 5-35 (173)
438 TIGR03411 urea_trans_UrtD urea 80.0 1.4 3E-05 47.5 3.0 27 252-278 26-52 (242)
439 PRK13548 hmuV hemin importer A 80.0 1.3 2.8E-05 48.4 2.9 27 252-278 26-52 (258)
440 PRK14268 phosphate ABC transpo 79.9 1.4 2.9E-05 48.2 3.0 27 252-278 36-62 (258)
441 PRK14237 phosphate transporter 79.9 1.4 3E-05 48.5 3.1 27 252-278 44-70 (267)
442 TIGR01193 bacteriocin_ABC ABC- 79.9 1 2.2E-05 56.6 2.2 28 253-280 499-526 (708)
443 TIGR01188 drrA daunorubicin re 79.9 1.3 2.9E-05 49.5 3.0 27 252-278 17-43 (302)
444 TIGR00929 VirB4_CagE type IV s 79.9 1.7 3.7E-05 55.2 4.3 31 253-283 433-463 (785)
445 PRK15056 manganese/iron transp 79.9 1.3 2.9E-05 48.7 2.9 27 252-278 31-57 (272)
446 PRK08699 DNA polymerase III su 79.9 2.3 5.1E-05 48.3 5.0 39 243-281 8-48 (325)
447 cd01128 rho_factor Transcripti 79.9 0.99 2.1E-05 49.4 1.9 38 243-280 5-42 (249)
448 PRK11831 putative ABC transpor 79.9 1.3 2.9E-05 48.6 2.9 27 252-278 31-57 (269)
449 PRK06921 hypothetical protein; 79.9 2.8 6.2E-05 46.3 5.5 29 253-281 116-144 (266)
450 PRK14270 phosphate ABC transpo 79.8 1.4 3E-05 47.8 3.0 27 252-278 28-54 (251)
451 PRK13949 shikimate kinase; Pro 79.7 1.5 3.3E-05 44.9 3.1 24 256-279 3-26 (169)
452 PRK05707 DNA polymerase III su 79.7 2.5 5.4E-05 48.2 5.1 39 243-281 10-49 (328)
453 PRK11144 modC molybdate transp 79.7 1.3 2.9E-05 50.8 3.0 26 252-277 22-47 (352)
454 cd00267 ABC_ATPase ABC (ATP-bi 79.6 1.5 3.2E-05 43.9 3.0 25 252-276 23-47 (157)
455 PRK05642 DNA replication initi 79.6 3.2 6.9E-05 44.9 5.7 27 255-281 46-72 (234)
456 TIGR01351 adk adenylate kinase 79.6 1.4 3.1E-05 46.5 2.9 22 257-278 2-23 (210)
457 PRK14265 phosphate ABC transpo 79.6 1.4 3E-05 48.7 3.0 27 252-278 44-70 (274)
458 cd03264 ABC_drug_resistance_li 79.6 1.3 2.9E-05 46.6 2.7 23 256-278 27-49 (211)
459 PRK14241 phosphate transporter 79.6 1.4 3.1E-05 48.0 3.0 27 252-278 28-54 (258)
460 KOG0942 E3 ubiquitin protein l 79.5 3 6.5E-05 52.1 5.9 25 865-889 26-50 (1001)
461 PRK13631 cbiO cobalt transport 79.5 1.4 3E-05 50.0 3.0 28 252-279 50-77 (320)
462 PRK13341 recombination factor 79.5 2.1 4.6E-05 53.7 4.8 36 243-278 41-76 (725)
463 COG1474 CDC6 Cdc6-related prot 79.4 2.1 4.6E-05 49.4 4.5 41 243-283 31-71 (366)
464 cd03114 ArgK-like The function 79.4 1.9 4.2E-05 43.2 3.6 26 257-282 2-27 (148)
465 PRK09984 phosphonate/organopho 79.4 1.4 3.1E-05 48.1 3.0 27 252-278 28-54 (262)
466 PRK14244 phosphate ABC transpo 79.3 1.5 3.2E-05 47.6 3.0 27 252-278 29-55 (251)
467 PRK14262 phosphate ABC transpo 79.3 1.4 3.1E-05 47.6 3.0 27 252-278 27-53 (250)
468 PRK14259 phosphate ABC transpo 79.3 1.4 3.1E-05 48.4 3.0 27 252-278 37-63 (269)
469 PRK10895 lipopolysaccharide AB 79.3 1.5 3.2E-05 47.2 3.0 27 252-278 27-53 (241)
470 COG4778 PhnL ABC-type phosphon 79.3 1.5 3.2E-05 45.1 2.7 23 252-274 35-57 (235)
471 PF13086 AAA_11: AAA domain; P 79.2 2.1 4.6E-05 44.8 4.1 34 243-278 8-41 (236)
472 PRK14235 phosphate transporter 79.2 1.5 3.2E-05 48.2 3.0 27 252-278 43-69 (267)
473 PRK14271 phosphate ABC transpo 79.1 1.5 3.2E-05 48.5 3.1 27 252-278 45-71 (276)
474 PRK07994 DNA polymerase III su 79.1 2.4 5.2E-05 52.4 5.1 54 224-281 7-65 (647)
475 PRK13547 hmuV hemin importer A 79.1 1.4 3.1E-05 48.6 2.9 27 252-278 25-51 (272)
476 PRK03695 vitamin B12-transport 79.1 1.4 3E-05 47.9 2.7 27 252-278 20-46 (248)
477 PRK14272 phosphate ABC transpo 79.1 1.5 3.3E-05 47.5 3.0 27 252-278 28-54 (252)
478 TIGR00959 ffh signal recogniti 79.0 1.9 4.2E-05 50.8 4.0 29 252-280 97-125 (428)
479 TIGR00362 DnaA chromosomal rep 79.0 3 6.4E-05 48.8 5.6 27 255-281 137-163 (405)
480 PRK09183 transposase/IS protei 79.0 1.8 3.9E-05 47.6 3.6 28 253-280 101-128 (259)
481 TIGR03797 NHPM_micro_ABC2 NHPM 79.0 1.1 2.3E-05 56.2 2.0 30 252-281 477-506 (686)
482 PRK10851 sulfate/thiosulfate t 79.0 1.5 3.2E-05 50.6 3.0 27 252-278 26-52 (353)
483 PRK14722 flhF flagellar biosyn 78.9 1.8 3.9E-05 50.1 3.7 28 253-280 136-163 (374)
484 PRK13649 cbiO cobalt transport 78.9 1.5 3.2E-05 48.5 2.9 27 252-278 31-57 (280)
485 TIGR02397 dnaX_nterm DNA polym 78.9 3.1 6.6E-05 47.4 5.6 30 251-280 33-62 (355)
486 TIGR00073 hypB hydrogenase acc 78.9 2.5 5.3E-05 44.6 4.5 33 247-279 15-47 (207)
487 PRK13975 thymidylate kinase; P 78.8 1.7 3.7E-05 45.0 3.2 24 255-278 3-26 (196)
488 COG1132 MdlB ABC-type multidru 78.8 1.2 2.6E-05 54.4 2.3 29 252-280 353-381 (567)
489 PRK05201 hslU ATP-dependent pr 78.8 2.9 6.2E-05 49.1 5.2 25 254-278 50-74 (443)
490 PRK05896 DNA polymerase III su 78.8 2.8 6E-05 51.4 5.3 54 224-281 7-65 (605)
491 PRK00771 signal recognition pa 78.7 3.3 7.2E-05 49.0 5.9 30 252-281 93-122 (437)
492 PRK15112 antimicrobial peptide 78.7 1.5 3.3E-05 48.1 3.0 27 252-278 37-63 (267)
493 TIGR02769 nickel_nikE nickel i 78.7 1.5 3.3E-05 48.0 3.0 26 252-277 35-60 (265)
494 PRK14256 phosphate ABC transpo 78.7 1.6 3.4E-05 47.5 3.0 27 252-278 28-54 (252)
495 PRK14532 adenylate kinase; Pro 78.7 1.5 3.3E-05 45.2 2.8 23 256-278 2-24 (188)
496 PLN02200 adenylate kinase fami 78.6 2 4.3E-05 46.6 3.7 26 253-278 42-67 (234)
497 PRK10865 protein disaggregatio 78.6 1.9 4.1E-05 55.3 4.1 25 255-279 599-623 (857)
498 PRK14949 DNA polymerase III su 78.6 2.4 5.1E-05 53.9 4.8 52 225-280 8-64 (944)
499 PRK14243 phosphate transporter 78.6 1.6 3.4E-05 47.9 3.0 27 252-278 34-60 (264)
500 cd00268 DEADc DEAD-box helicas 78.6 4.8 0.0001 41.7 6.5 43 236-281 21-64 (203)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.8e-211 Score=1885.71 Aligned_cols=817 Identities=44% Similarity=0.714 Sum_probs=743.4
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecC--CeeEEEcC--CCcEEEEeCCCcc--cCCCCcCCCccccccCcCcCchhHHHHH
Q 002188 117 KKKLQSWFQLPNGNWELGKILSISG--TESVISLP--EGKVLKVKSENLV--SANPDILDGVDDLMQLSYLNEPSVLYNL 190 (955)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~~~--~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~l~E~siL~~L 190 (955)
..|..||+|+.+..|..+.+.+... +.++...+ +|....|+...+. ..+||.++++|||+.|++||||+|||||
T Consensus 7 ~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL 86 (1463)
T COG5022 7 EVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNL 86 (1463)
T ss_pred ccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHH
Confidence 4678999999999999999998753 32222222 5544555555443 3457799999999999999999999999
Q ss_pred HHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChh
Q 002188 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKT 268 (955)
Q Consensus 191 ~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKT 268 (955)
++||.+|+||||+|-+|||||||+.+|||++++++.|.++... +|||||||+.||++|+..++|||||||||||||||
T Consensus 87 ~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKT 166 (1463)
T COG5022 87 EKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKT 166 (1463)
T ss_pred HHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCch
Confidence 9999999999999999999999999999999999999998865 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCC-----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCCee
Q 002188 269 ETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343 (955)
Q Consensus 269 e~~K~il~yL~~~~~~~-----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsR 343 (955)
|+||.||+|||++++++ .||++||++||||||||||||+|||||||||||++|.||.+|.|+||+|++|||||||
T Consensus 167 e~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSR 246 (1463)
T COG5022 167 ENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSR 246 (1463)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhh
Confidence 99999999999998765 6899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHHHHHHH
Q 002188 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM 423 (955)
Q Consensus 344 Vv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~i~~i 423 (955)
||+|+.+|||||||||||+|+++..++.+++..+.+|.||++++|..++|+||+++|+.|++||++|||+.++|..||+|
T Consensus 247 VV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~i 326 (1463)
T COG5022 247 VVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKI 326 (1463)
T ss_pred hccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHHHHHHHHH
Q 002188 424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY 503 (955)
Q Consensus 424 laAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalak~LY 503 (955)
||||||||||+|..+.+ +.+.+.+.+.++.+|.|||||++.|.++|+.|.|++|+|.|.+++|.+||..+||||||+||
T Consensus 327 LAaILhiGNIef~~~r~-g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY 405 (1463)
T COG5022 327 LAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALY 405 (1463)
T ss_pred HHHHHhhcceeeeeccc-chhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999987543 45677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCceec
Q 002188 504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583 (955)
Q Consensus 504 ~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i 583 (955)
++||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++||+||.+|||+|++|
T Consensus 406 ~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~I 484 (1463)
T COG5022 406 SNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFI 484 (1463)
T ss_pred HHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999987544 56899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHhHHHhhhc-CCCccccccccccCCCCCChHHHHHHHHHHhC--CCCCCcCCC--CCCcEEEcccccceeccchh
Q 002188 584 DFEDNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGF 658 (955)
Q Consensus 584 ~f~dN~~~ldlie~-kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~--~~~~f~~~~--~~~F~I~HyAG~V~Y~~~gf 658 (955)
+|.|||+||||||+ .|.|||++|||||.+|.|||++|..||.+.++ +++.|+++| ...|+|+||||+|+|+++||
T Consensus 485 dy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ 564 (1463)
T COG5022 485 DYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGF 564 (1463)
T ss_pred ccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccch
Confidence 99999999999997 47899999999999999999999999999886 467788775 56899999999999999999
Q ss_pred hhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeE
Q 002188 659 LEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFI 737 (955)
Q Consensus 659 leKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfI 737 (955)
++||+|+++.++++||..|++++ ..+|....... ...+++|+++.||.||.+||.+|++|+||||
T Consensus 565 ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyI 630 (1463)
T COG5022 565 LDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYI 630 (1463)
T ss_pred hhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCcee
Confidence 99999999999999999999985 56886322111 1246799999999999999999999999999
Q ss_pred EeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccC------CChHHHHHHHHH
Q 002188 738 RCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILH 811 (955)
Q Consensus 738 RCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~iL~ 811 (955)
||||||.+|+|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|..... .|.+.+|..||.
T Consensus 631 RCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~ 710 (1463)
T COG5022 631 RCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILE 710 (1463)
T ss_pred EeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999975332 356889999999
Q ss_pred HcCCCCcceeecceeeeeeecccccccccccccccc-hhhhhhhhhcchhhHhhhhhhh---------------------
Q 002188 812 QFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRR--------------------- 869 (955)
Q Consensus 812 ~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a-av~IQa~~Rg~laRk~~~~~r~--------------------- 869 (955)
.+.++...||+|+||||||.++++.||.+|...+.. ++.||++|||+..|++|.+..+
T Consensus 711 ~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~ 790 (1463)
T COG5022 711 ELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE 790 (1463)
T ss_pred hhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc
Confidence 999999999999999999999999999999998865 6789999999999999876544
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHh-----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002188 870 ----GIVALQSFIRGEKIRKEYALVLQ-----------------------RHRAAVVIQRQIKSRVARQKLKNIKYSSIM 922 (955)
Q Consensus 870 ----aav~IQs~~Rg~~aRr~~~~l~~-----------------------~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~ 922 (955)
+.+.+|+.||....|+.|..... ...|++.+|+.||.+..+++|..+.+.++.
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~ 870 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIY 870 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHH
Confidence 35666666666666655533211 456899999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhccchh
Q 002188 923 IQSVIRGWLVRRCSGDICLLKSVESKV 949 (955)
Q Consensus 923 IQs~~Rg~laRr~~~~l~~~~~~~~~~ 949 (955)
+|+.+|.-.|+|++..++.+.+...++
T Consensus 871 ~~~~~r~~~a~r~~~e~k~~~~~~~~l 897 (1463)
T COG5022 871 LQSAQRVELAERQLQELKIDVKSISSL 897 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999998888755444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.8e-205 Score=1845.70 Aligned_cols=754 Identities=32% Similarity=0.534 Sum_probs=689.3
Q ss_pred ccCcEEEE-------ecCCCCEEeEEEE-EecCCeeEEEc---CCCcEEEEeCCCcccCCCCc-CCCccccccCcCcCch
Q 002188 117 KKKLQSWF-------QLPNGNWELGKIL-SISGTESVISL---PEGKVLKVKSENLVSANPDI-LDGVDDLMQLSYLNEP 184 (955)
Q Consensus 117 ~~~~~vw~-------~~~~~~~~~~~v~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~~~Dl~~L~~l~E~ 184 (955)
.+|..||+ ++|+..|..|+|+ +..++.+++.. ++|++++|+.+++.++||+. .+++|||+.|++|||+
T Consensus 31 ~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~ 110 (821)
T PTZ00014 31 LKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIP 110 (821)
T ss_pred ccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHH
Confidence 35667777 6788999999999 78888888773 47999999999999999996 6889999999999999
Q ss_pred hHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCC---CCCchhHHHHHHHHHHHHcCceeEEEEcC
Q 002188 185 SVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI---ESPHVYAITDTAIREMIRDEVNQSIIISG 261 (955)
Q Consensus 185 siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~---~~PHiyavA~~Ay~~m~~~~~~QsIiisG 261 (955)
+||++|+.||.++.||||+|++|||||||+.+|+|++++++.|+++.. .|||||+||+.||++|+..++||||||||
T Consensus 111 ~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSG 190 (821)
T PTZ00014 111 CVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSG 190 (821)
T ss_pred HHHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 999999999999999999999999999999999999999999998542 38999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeee
Q 002188 262 ESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFL 338 (955)
Q Consensus 262 ESGAGKTe~~K~il~yL~~~~~~~---~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yL 338 (955)
||||||||+||+||+|||..+++. .|+++|+++||||||||||||+|||||||||||++|+|+.+|.|+||+|++||
T Consensus 191 ESGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YL 270 (821)
T PTZ00014 191 ESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFL 270 (821)
T ss_pred CCCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEe
Confidence 999999999999999999987643 69999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHH
Q 002188 339 LEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQE 418 (955)
Q Consensus 339 LEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~ 418 (955)
|||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++ +|..++++||+++|++++.||++|||+++|+.
T Consensus 271 LEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~ 349 (821)
T PTZ00014 271 LEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGLSESQIE 349 (821)
T ss_pred ccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999995 58889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCeeEEEeCC---CCccccCC--hhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHH
Q 002188 419 SVFAMLAAVLWLGNVSFTVIDN---ENHVEPVA--DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATD 493 (955)
Q Consensus 419 ~i~~ilaAILhLGni~F~~~~~---~~~~~~~~--~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~ 493 (955)
.||+|||||||||||+|...+. ++.+.+.+ .+.++.||+||||++++|.++|+++++.+++|.+++++|++||.+
T Consensus 350 ~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~ 429 (821)
T PTZ00014 350 DIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEM 429 (821)
T ss_pred HHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHH
Confidence 9999999999999999986532 23344444 458999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHH
Q 002188 494 TRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEY 573 (955)
Q Consensus 494 ~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY 573 (955)
+||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||||||+||++||+.||+||
T Consensus 430 ~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY 508 (821)
T PTZ00014 430 LKDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLY 508 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754 34679999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC---CCCcEEEccccc
Q 002188 574 IQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGE 650 (955)
Q Consensus 574 ~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~---~~~F~I~HyAG~ 650 (955)
.+|||+|+.|+|.||++|||||++||.|||++|||||++|++||++|++||++++++|++|.+++ ...|+|+||||+
T Consensus 509 ~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~ 588 (821)
T PTZ00014 509 KDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGD 588 (821)
T ss_pred HHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEecee
Confidence 99999999999999999999999999999999999999999999999999999999999998764 479999999999
Q ss_pred ceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHH
Q 002188 651 VIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRL 729 (955)
Q Consensus 651 V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L 729 (955)
|+|+++||++||+|.|+++++++|++|++++ ..+|....... +...+..||+++|+.||+.||++|
T Consensus 589 V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-------------~~~~k~~tv~s~Fk~qL~~Lm~~L 655 (821)
T PTZ00014 589 IQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEK-------------GKLAKGQLIGSQFLNQLDSLMSLI 655 (821)
T ss_pred eeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccc-------------ccccCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886 45775422110 112235799999999999999999
Q ss_pred hccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcccccccc--CCChHHHHH
Q 002188 730 ESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSV 807 (955)
Q Consensus 730 ~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~ 807 (955)
++|+||||||||||+.|+|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|.+...+ ..|+++.|+
T Consensus 656 ~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~ 735 (821)
T PTZ00014 656 NSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAE 735 (821)
T ss_pred hccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887554 348899999
Q ss_pred HHHHHcCCCCcceeecceeeeeeeccccccccccccccc----chhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHHHHH
Q 002188 808 AILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH----GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKI 883 (955)
Q Consensus 808 ~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~----aav~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg~~a 883 (955)
.||+.+++++++|++|+||||||.+.+..||+.|..++. .+..||++||||++|++|++++.++++||++||+|+.
T Consensus 736 ~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~ 815 (821)
T PTZ00014 736 KLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLV 815 (821)
T ss_pred HHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988765543 2455666666666666666666666666666666665
Q ss_pred HH
Q 002188 884 RK 885 (955)
Q Consensus 884 Rr 885 (955)
++
T Consensus 816 ~~ 817 (821)
T PTZ00014 816 IA 817 (821)
T ss_pred Hh
Confidence 54
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=2e-194 Score=1729.71 Aligned_cols=677 Identities=86% Similarity=1.321 Sum_probs=646.2
Q ss_pred cCCCCcCCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHH
Q 002188 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITD 242 (955)
Q Consensus 163 ~~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~ 242 (955)
|+||+.++++|||+.|++|||++||++|+.||.+++||||+|+||||||||+.+|+|++++++.|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEE
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 322 (955)
+||+.|..+++||||||||||||||||++|+||+||+.+++++.++++|+++||||||||||||++||||||||||++|+
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~ 160 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIH 160 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEE
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHH
Q 002188 323 FSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402 (955)
Q Consensus 323 F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 402 (955)
||.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++
T Consensus 161 f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~ 240 (677)
T cd01383 161 FSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHT 240 (677)
T ss_pred ECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceE
Q 002188 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 482 (955)
Q Consensus 403 ~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~ 482 (955)
+++||+.|||+++|+..||+|||||||||||+|...++++.+++.+++.++.||+||||++++|.++||++++.+++|.+
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 320 (677)
T cd01383 241 LVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNI 320 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceE
Confidence 99999999999999999999999999999999998776666778888999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHH
Q 002188 483 VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFN 562 (955)
Q Consensus 483 ~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~ 562 (955)
.++++++||.++||||||+||++||+|||.+||.+|.++......+||||||||||+|+.||||||||||||||||++||
T Consensus 321 ~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 400 (677)
T cd01383 321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFN 400 (677)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998655567899999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCCCCCc
Q 002188 563 RHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSF 642 (955)
Q Consensus 563 ~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~~~~F 642 (955)
+++|+.||++|++|||+|+.|+|.||++|||||++||.|||++|||||++|++||++|++||++++++|++|.++++..|
T Consensus 401 ~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F 480 (677)
T cd01383 401 RHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGAF 480 (677)
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred EEEcccccceeccchhhhhccccchHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHH
Q 002188 643 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQL 722 (955)
Q Consensus 643 ~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L 722 (955)
+|+||||+|+|+++||++||+|.++.|++++|++|++++.++|.+.+..++ +..++..+.++...+..||+++|+.||
T Consensus 481 ~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s--~~~~~~~~~~~~~~~~~tv~~~fk~qL 558 (677)
T cd01383 481 TVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQS--PVVGPLYVASAADSQKLSVGTKFKGQL 558 (677)
T ss_pred EEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhccc--cccccccccccccccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999889976543322 111222222233456789999999999
Q ss_pred HHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccCCCh
Q 002188 723 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 802 (955)
Q Consensus 723 ~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 802 (955)
++||++|++|+||||||||||+.|+|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|+
T Consensus 559 ~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~ 638 (677)
T cd01383 559 FKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDP 638 (677)
T ss_pred HHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777789
Q ss_pred HHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 803 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 803 ~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
+..|+.||+.+++++++|++|+||||||.++++.||+.|
T Consensus 639 ~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 639 LSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999999999999999999999999876
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.3e-189 Score=1685.53 Aligned_cols=659 Identities=43% Similarity=0.734 Sum_probs=623.3
Q ss_pred CccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002188 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (955)
Q Consensus 171 ~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m 248 (955)
+||||+.|++|||++||++|+.||.++.||||+|+||||||||+++|+|+++.++.|+++... |||||+||+.||++|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987643 899999999999999
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCC
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETG 327 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~-~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g 327 (955)
+++++||||||||||||||||++|++|+||+.++++. .++++|+++||||||||||||++||||||||||++|+|+.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 9999999999999999999999999999999998754 799999999999999999999999999999999999999999
Q ss_pred CeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHh
Q 002188 328 KISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEAL 407 (955)
Q Consensus 328 ~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 407 (955)
+|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccChhhHHHHHHHHHHHHHhcCeeEEEeCC--CCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEec
Q 002188 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQN 485 (955)
Q Consensus 408 ~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~ 485 (955)
+.|||+++|+..||+|||||||||||+|...+. .+.+++.+.+.++.||.||||++++|.++||++++.+++|.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999987643 346788999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhh
Q 002188 486 LTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHL 565 (955)
Q Consensus 486 ~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~ 565 (955)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.||||||||||||||||++||+++
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986534456899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC---CCCc
Q 002188 566 FKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSF 642 (955)
Q Consensus 566 F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~---~~~F 642 (955)
|+.||++|++|||+|..|+|.||++|||||++||.|||++|||||++|+|||++|++||++.+++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997643 5789
Q ss_pred EEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHH
Q 002188 643 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQ 721 (955)
Q Consensus 643 ~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~ 721 (955)
+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... +.+...+..||+++|+.|
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~------------~~~~~~k~~tv~~~fk~q 548 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEM------------GAETRKKKPTLSSQFRRS 548 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccc------------cccccccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999886 4577543210 011223468999999999
Q ss_pred HHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcccccccc---
Q 002188 722 LFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--- 798 (955)
Q Consensus 722 L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--- 798 (955)
|+.||++|++|+||||||||||..|+|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|++...+
T Consensus 549 L~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~ 628 (671)
T cd01381 549 LDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYK 628 (671)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 799 SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 799 ~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
..++++.|+.|++.+.+++++|++|+||||||.+++..||+.|
T Consensus 629 ~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 629 QDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 3467889999999999999999999999999999999999876
No 5
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=7.1e-189 Score=1690.08 Aligned_cols=671 Identities=47% Similarity=0.759 Sum_probs=625.1
Q ss_pred CCcCCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHH
Q 002188 166 PDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDT 243 (955)
Q Consensus 166 p~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~ 243 (955)
||.++++|||+.|++|||++||++|+.||.++.||||+|+||||||||+++|+|++++++.|+++... |||||+||++
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999987654 8999999999
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC-----------CchhhhhhhhHHHHhhcCcccCCCCCC
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----------GIEYEILKTNPILEAFGNAKTSRNDNS 312 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~-----------~i~~~il~snpiLEAFGNAkT~~N~NS 312 (955)
||++|..+++||||||||||||||||++|+||+||+.+++++ .|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999997642 689999999999999999999999999
Q ss_pred CCcccEEEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCc-ccCccccCCCcccC
Q 002188 313 SRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSA-KEYKYLRQSSCYSI 391 (955)
Q Consensus 313 SRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~-~~y~yL~~~~~~~~ 391 (955)
||||||++|+|+.+|+|+||+|.+|||||||||.|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999875 89999999876 46
Q ss_pred CCcchHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhc
Q 002188 392 NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALS 471 (955)
Q Consensus 392 ~~~dD~~~f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~ 471 (955)
+++||+++|++++.||+.|||+++++.+||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987666778889999999999999999999999999
Q ss_pred cceeeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHh
Q 002188 472 TRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (955)
Q Consensus 472 ~~~~~~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcIN 551 (955)
++++.+++|.+.++++++||.++||+|||+||++||+|||++||.+|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34568999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhHHHHHHHHcCCCceecccC-CcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCC
Q 002188 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNS 630 (955)
Q Consensus 552 yaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~-dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~ 630 (955)
||||+||++|++++|+.||++|++|||+|+.|+|. ||++|||||++||.|||++|||||++|++||++|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CCCCcC--C--CCCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCC
Q 002188 631 NPCFRG--E--RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAG 705 (955)
Q Consensus 631 ~~~f~~--~--~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~ 705 (955)
+++|.. + .+..|+|+||||+|+|+++||++||+|.+++|++++|++|++++ ..+|.......+. ..++. ..+
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~--~~~~~-~~~ 555 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD--GGGGG-GKK 555 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc--ccccc-CCC
Confidence 988732 2 25689999999999999999999999999999999999999886 4577543321100 00111 111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHH
Q 002188 706 GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 785 (955)
Q Consensus 706 ~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF 785 (955)
...++..||+++|+.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|++|
T Consensus 556 ~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F 635 (693)
T cd01377 556 KKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEF 635 (693)
T ss_pred CcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHH
Confidence 12234589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccc--CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 786 ARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 786 ~~RY~~L~~~~~~--~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
++||++|++..++ ..|+++.|+.||+.+++++++|++|+||||||.+++..||.+|
T Consensus 636 ~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 636 RQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999998643 3578999999999999999999999999999999999999876
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=7.8e-189 Score=1689.28 Aligned_cols=670 Identities=49% Similarity=0.817 Sum_probs=622.6
Q ss_pred CccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002188 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (955)
Q Consensus 171 ~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m 248 (955)
|+|||+.|++|||++||++|+.||.+++||||+|+||||||||+.+|+|++++++.|+++... |||||+||++||++|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988754 899999999999999
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC-------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~-------~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l 321 (955)
+++++||||||||||||||||++|+||+||+.++++. .|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998643 799999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHH
Q 002188 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (955)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (955)
+||.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCce
Q 002188 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT 481 (955)
Q Consensus 402 ~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~ 481 (955)
++++||+.|||+++|+..||+|||||||||||+|...++++.....+.+.++.||+||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766544333456678999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--CCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHH
Q 002188 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK--RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQ 559 (955)
Q Consensus 482 ~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~--~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~ 559 (955)
+.+++|++||.++||||||+||++||+|||++||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998752 3456799999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhC--CCCCCcCC
Q 002188 560 HFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGE 637 (955)
Q Consensus 560 ~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~--~~~~f~~~ 637 (955)
+||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|++||++|++||+++++ +|++|.++
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~ 479 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKP 479 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCC
Confidence 99999999999999999999999999999999999997 5999999999999999999999999999998 89999876
Q ss_pred C--CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCc---cCC-CccCCCCCCC
Q 002188 638 R--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPV---VGP-LYKAGGADSQ 710 (955)
Q Consensus 638 ~--~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~---~~~-~~~~~~~~~~ 710 (955)
+ ...|+|+||||+|+|+++||++||+|.+++|++++|++|++++ ..+|.......+.... .++ ....++...+
T Consensus 480 ~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (691)
T cd01380 480 RFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQH 559 (691)
T ss_pred CCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccC
Confidence 5 5689999999999999999999999999999999999999886 5677543321110000 000 0111223456
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhh
Q 002188 711 KLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYG 790 (955)
Q Consensus 711 ~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~ 790 (955)
.+||+++|+.||+.||++|++|+||||||||||..++|+.||.++|++||||+||||+|||+|+|||+|++|++|++||+
T Consensus 560 ~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~ 639 (691)
T cd01380 560 KPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYR 639 (691)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 791 FLLLESV-ASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 791 ~L~~~~~-~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
+|++... ...|+++.|+.||+.+..++++|++|+||||||.+++..||+.|
T Consensus 640 ~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 640 VLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 9999876 35688999999999998888999999999999999999999876
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=6.9e-188 Score=1672.60 Aligned_cols=658 Identities=48% Similarity=0.820 Sum_probs=618.8
Q ss_pred CCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 002188 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (955)
Q Consensus 170 ~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~ 246 (955)
++||||+.|++|||++|||+|+.||.++.||||+|+||||||||+++| +|++++++.|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999 9999999999988654 8999999999999
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC-----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~-----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l 321 (955)
+|.++++||||||||||||||||++|++|+||+.++++. .|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997532 699999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHH
Q 002188 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (955)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (955)
+|+.+|.|+||+|++||||||||++|++||||||||||||+| ++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccC---ChhHHHHHHHhcCCCHHHHHHhhccceeeeC
Q 002188 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPV---ADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (955)
Q Consensus 402 ~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 478 (955)
++++||+.|||+++++..||+|||||||||||+|...++.+.+.+. +.+.++.||+||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 9999999999999999999999999999999999876544444443 3588999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHH
Q 002188 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (955)
Q Consensus 479 ~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ 558 (955)
+|.++++++++||.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34689999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC
Q 002188 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER 638 (955)
Q Consensus 559 ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~ 638 (955)
++||+++|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.+++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred --CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 002188 639 --DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 715 (955)
Q Consensus 639 --~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 715 (955)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|....... +..++..||+
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-------------~~~~k~~tv~ 545 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEET-------------SKSSKFSSIG 545 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhccccccc-------------ccccccccHH
Confidence 5799999999999999999999999999999999999999986 45775422110 1123458999
Q ss_pred HHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccc
Q 002188 716 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 795 (955)
Q Consensus 716 ~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 795 (955)
++|+.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|++.
T Consensus 546 ~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 625 (674)
T cd01384 546 SRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPE 625 (674)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc-CCChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccc
Q 002188 796 SVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT 844 (955)
Q Consensus 796 ~~~-~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~ 844 (955)
..+ ..+.+..|+.||..+++ ++|++|+||||||.+++..||..|++.
T Consensus 626 ~~~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 626 VLKGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred cccCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 654 34678899999998765 579999999999999999999998764
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.9e-187 Score=1673.30 Aligned_cols=656 Identities=45% Similarity=0.735 Sum_probs=620.3
Q ss_pred CccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002188 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (955)
Q Consensus 171 ~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m 248 (955)
|||||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||++||++|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999998654 899999999999999
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEc
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~ 324 (955)
+.+++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998764 589999999999999999999999999999999999999
Q ss_pred CCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHH
Q 002188 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVV 404 (955)
Q Consensus 325 ~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~ 404 (955)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|++++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCC----c
Q 002188 405 EALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN----D 480 (955)
Q Consensus 405 ~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~----e 480 (955)
+||+.|||+++|+..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 999999999999999999999999999999987554 33678899999999999999999999999999999998 9
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHH
Q 002188 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (955)
Q Consensus 481 ~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~ 560 (955)
.++++++++||.++||+|||+||++||+|||.+||++|.+.......+||||||||||+|+.||||||||||||||||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445578999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhc-CCCccccccccccCCC-CCChHHHHHHHHHHhCCCCCCcCC-
Q 002188 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFP-NGTDLTFANKLKQHLNSNPCFRGE- 637 (955)
Q Consensus 561 f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~-kp~Gil~lLDee~~~p-~~td~~fl~kl~~~~~~~~~f~~~- 637 (955)
||+++|+.||++|++|||+|+.|+|.||++|||||++ ||.|||++|||||++| ++||++|++||++++++|+++..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999 8999999999999999 999999999999999999886543
Q ss_pred -CCCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcchh-HHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 002188 638 -RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 715 (955)
Q Consensus 638 -~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 715 (955)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++ .+|.+.... ....+..||+
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~--------------~~~~~~~tv~ 545 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDA--------------DSKKRPTTAG 545 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccc--------------cccCCCCcHH
Confidence 367999999999999999999999999999999999999999864 567532110 0112347999
Q ss_pred HHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccc
Q 002188 716 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 795 (955)
Q Consensus 716 ~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~ 795 (955)
++||.||++||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++.
T Consensus 546 ~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 625 (674)
T cd01378 546 FKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPK 625 (674)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--CCChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccc
Q 002188 796 SVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 841 (955)
Q Consensus 796 ~~~--~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~-~l~~LE~~R 841 (955)
..+ ..|+++.|+.||..+++++++|++|+||||||.+ ++..||+.|
T Consensus 626 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 626 TWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 543 4588999999999999999999999999999997 699999876
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.4e-186 Score=1664.33 Aligned_cols=667 Identities=42% Similarity=0.727 Sum_probs=617.3
Q ss_pred CCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHH
Q 002188 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247 (955)
Q Consensus 170 ~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~ 247 (955)
++||||+.|++|||++||++|+.||.+|+||||+|+||||||||+.+|+|+++.++.|+++... |||||+||++||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999987654 89999999999999
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC--CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcC
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE 325 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~--~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~ 325 (955)
|+.+++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++||||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 99999999999999999999999999999999987543 699999999999999999999999999999999999995
Q ss_pred CCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHH
Q 002188 326 TGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVE 405 (955)
Q Consensus 326 ~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~ 405 (955)
+|.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+++|+.+++
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCC--CCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEE
Q 002188 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (955)
Q Consensus 406 al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~ 483 (955)
||+.|||+++|+..||+|||||||||||+|...+. .+.+++.+++.++.||+||||++++|.++||++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987543 2347788899999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHH
Q 002188 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (955)
Q Consensus 484 ~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 563 (955)
++++++||.++||+|||+||++||+|||++||.+|.+. ....+||||||||||+|+.||||||||||||||||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999863 3457999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC--CCC
Q 002188 564 HLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKS 641 (955)
Q Consensus 564 ~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~--~~~ 641 (955)
++|+.||+||.+|||+|+.|+|.||++|||||++||.|||++|||||.+|++||++|++|++..+++|++|.+++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred cEEEcccccceeccchhhhhccccchHHHHHHHhhcCcchh-HHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 002188 642 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 720 (955)
Q Consensus 642 F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~ 720 (955)
|+|+||||+|+|+++||++||+|.++++++++|.+|+++++ .+|.......+.+.. +...+++...+.+||+++|+.
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~--~~~s~~~~~~~~~tv~~~f~~ 555 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL--GKSSSGTRLYKAHTVAAKFQQ 555 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc--cCCCccccccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999998865 566543211111100 000111223346899999999
Q ss_pred HHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccCC
Q 002188 721 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 800 (955)
Q Consensus 721 ~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~ 800 (955)
||+.||++|++|+||||||||||+.++|+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|++......
T Consensus 556 sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~ 635 (677)
T cd01387 556 SLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARP 635 (677)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765444
Q ss_pred ChHHH-HHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 801 DPLSV-SVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 801 d~~~~-~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
++.+. +..+++.++++++.|++|+||||||.+++..||..|
T Consensus 636 ~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 636 APGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred CcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44444 467888889999999999999999999999999876
No 10
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.1e-186 Score=1664.77 Aligned_cols=669 Identities=40% Similarity=0.676 Sum_probs=619.2
Q ss_pred CCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCC---CCCCchhHHHHHHH
Q 002188 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKS---IESPHVYAITDTAI 245 (955)
Q Consensus 169 ~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~---~~~PHiyavA~~Ay 245 (955)
.+++|||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|++++++.|+++. ..|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999998876 23899999999999
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCC----CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG----SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l 321 (955)
++|.++++||||||||||||||||++|+||+||+.+++. ++++++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998752 3799999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHH
Q 002188 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (955)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (955)
+|+.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++++|.++.+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999887778999999999
Q ss_pred HHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCC---CCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeC
Q 002188 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (955)
Q Consensus 402 ~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 478 (955)
++++||+.|||+++++..||+|||||||||||+|...++ ++.+.+.+.+.++.||.||||++++|.++||++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 999999999999999999999999999999999987532 34577889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--CCcceeeeeccccCcCCCC-CChHHHHHhhhhH
Q 002188 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR--RTGRSISILDIYGFESFDR-NSFEQFCINYANE 555 (955)
Q Consensus 479 ~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~--~~~~~IgILDifGFE~f~~-NsfEQLcINyaNE 555 (955)
||.++++++++||.++||+|||+||++||+|||++||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999986432 2457999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCc
Q 002188 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFR 635 (955)
Q Consensus 556 kLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~ 635 (955)
|||++||+++|+.||++|++|||+|..|+|.||++|||||++||.|||++|||||++|++||++|++|+++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC--CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCc
Q 002188 636 GER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKL 712 (955)
Q Consensus 636 ~~~--~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (955)
+++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|++++ ..+|.......... ...++........
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~----~~~~~~~~~~~~~ 561 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRW----AVLRAAFRAMAAP 561 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccc----ccccccccCccCC
Confidence 653 5689999999999999999999999999999999999999986 45775322111000 0011111122347
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcc
Q 002188 713 SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFL 792 (955)
Q Consensus 713 tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L 792 (955)
||+++|+.||++||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccc
Q 002188 793 LLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNR 843 (955)
Q Consensus 793 ~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~ 843 (955)
+|.... ..++.|+.||+.+++++++|++|+||||||.+++..||+...+
T Consensus 642 ~~~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~~ 690 (692)
T cd01385 642 LPKGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLHR 690 (692)
T ss_pred Cccccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHhh
Confidence 986532 3456799999999999999999999999999999999987544
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.6e-186 Score=1557.54 Aligned_cols=745 Identities=37% Similarity=0.625 Sum_probs=683.6
Q ss_pred CCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 002188 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (955)
Q Consensus 169 ~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~ 246 (955)
.-||+|++-|+.++|++++.|||.||.++.||||+|++||+||||+.++||++++++.|++...- |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998754 8999999999999
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEE
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~------~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~ 320 (955)
.|.+.++||||+|||||||||||++|+||+|+|++.+.+ .+.+.+|+|||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999997654 46678999999999999999999999999999999
Q ss_pred EEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCC-CCcccCccccCCCcccCCCcchHHH
Q 002188 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSINGVDDAEQ 399 (955)
Q Consensus 321 l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 399 (955)
|+||-+|..+|+.|.+|||||||||.|.+||||||||||||.|+++.+..+|+| +++..|.||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 478999999998 788899999999
Q ss_pred HHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCC
Q 002188 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN 479 (955)
Q Consensus 400 f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 479 (955)
|+.+.+||++|||+++|++++|+|+|||||||||+|...+++ .-+.+...+..+|+||++.+++|.++|+.|+|.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed~--~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNEDS--SGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCcc--cccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999875543 334455889999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC----CCcceeeeeccccCcCCCCCChHHHHHhhhhH
Q 002188 480 DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (955)
Q Consensus 480 e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDifGFE~f~~NsfEQLcINyaNE 555 (955)
|.+.+++|++||..+||||||++|+|||+|||.+||+++..... .....||+|||||||+|+.|||||||||||||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987432 22368999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCC-CChHHHHHHHHHHhCCCCCC
Q 002188 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPN-GTDLTFANKLKQHLNSNPCF 634 (955)
Q Consensus 556 kLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~-~td~~fl~kl~~~~~~~~~f 634 (955)
||||.|++-+++.|||||++|||+|+.|+|.+|+-++||+|.+..||+++|||||..|+ .||.+|+++|.+++++|+||
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999884 69999999999999999999
Q ss_pred cCCC---------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccC
Q 002188 635 RGER---------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKA 704 (955)
Q Consensus 635 ~~~~---------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~ 704 (955)
.+.. -.+|.|.||||+|+|++.||++||+|.|..|+..+|..|++++ ..+|.... +....
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~------~~~~~---- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGN------PDIAE---- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCC------hhHHh----
Confidence 6421 2589999999999999999999999999999999999999986 56774321 11100
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHH
Q 002188 705 GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQK 784 (955)
Q Consensus 705 ~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~e 784 (955)
...+.+|++++|+.|+..||+.|.+-+|+||||||||+.|.|+.||.+.|.+|.+|+|+||.+|++|+||.+|.+|+.
T Consensus 554 --~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~ 631 (1001)
T KOG0164|consen 554 --VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYER 631 (1001)
T ss_pred --hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHH
Confidence 123458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCC---ChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccccccccc-hhhhhhhhhcch
Q 002188 785 FARRYGFLLLESVASQ---DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHG-ILRVQSCFRGHQ 859 (955)
Q Consensus 785 F~~RY~~L~~~~~~~~---d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~-~l~~LE~~R~~~l~a-av~IQa~~Rg~l 859 (955)
|+.||+++++.+||.+ +.++.|..|++..++. +++++|+||||+|.+ .+..||+.|..++.. ++.||++||||+
T Consensus 632 FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~ 710 (1001)
T KOG0164|consen 632 FLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWL 710 (1001)
T ss_pred HHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999854 4578899999999887 789999999999997 489999999998866 567999999999
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhh
Q 002188 860 ARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN----------IKYSSIMIQSVIRG 929 (955)
Q Consensus 860 aRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~----------~r~Aai~IQs~~Rg 929 (955)
+|.+|++++++++.|+ |||.++.+ .++..||..+|++..++.|.+ ++.+.-.+|.++-.
T Consensus 711 ~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~r~ygk~~~WP~pP~~Lr~~~~~L~~lf~r 779 (1001)
T KOG0164|consen 711 ARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQMRDYGKSIRWPAPPLVLREFEELLRELFIR 779 (1001)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhccccCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999998 88844322 467789999999999998865 46677788888777
Q ss_pred HHHHHHHHHHh
Q 002188 930 WLVRRCSGDIC 940 (955)
Q Consensus 930 ~laRr~~~~l~ 940 (955)
|.|++-.+.+.
T Consensus 780 wra~~~~~~ip 790 (1001)
T KOG0164|consen 780 WRAWQILKSIP 790 (1001)
T ss_pred HHHHHHHHhCC
Confidence 88877776653
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=6.8e-185 Score=1658.58 Aligned_cols=662 Identities=39% Similarity=0.664 Sum_probs=613.5
Q ss_pred CCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 002188 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (955)
Q Consensus 169 ~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay 245 (955)
..+||||+.|++|||++||++|+.||.++.||||+|+||||||||+++| +|++++++.|+++... |||||+||++||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998 9999999999988654 899999999999
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCC-CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEc
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~-~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~ 324 (955)
++|.++++||||||||||||||||++|+||+||+.++++ ..|+++|+++||||||||||||++|+||||||||++|+|+
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 999999999999999999999999999999999998754 4899999999999999999999999999999999999999
Q ss_pred CCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCC-----------------
Q 002188 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS----------------- 387 (955)
Q Consensus 325 ~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~----------------- 387 (955)
.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ---------cccCCCcchHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCC-Ccc--ccCChhHHHHH
Q 002188 388 ---------CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE-NHV--EPVADEGLITV 455 (955)
Q Consensus 388 ---------~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~-~~~--~~~~~~~l~~~ 455 (955)
|...+++||+++|++++.||++|||+++++..||+|||||||||||+|...+++ +.+ ...+.+.++.|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 223567899999999999999999999999999999999999999999875432 223 33467899999
Q ss_pred HHhcCCCHHHHHHhhccceee-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceee
Q 002188 456 AKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530 (955)
Q Consensus 456 a~LLgv~~~~L~~~L~~~~~~-----~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~Ig 530 (955)
|.||||++++|.++|++|++. ++++.+.++++++||.++||+|||+||++||+|||++||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999998 7899999999999999999999999999999999999999998643 457999
Q ss_pred eeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCcccccccccc
Q 002188 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEES 610 (955)
Q Consensus 531 ILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~ 610 (955)
||||||||+|+.||||||||||||||||++||+++|+.||++|++|||+|++|+|.||++|||||++||.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCCCCCcCCC------------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcC
Q 002188 611 TFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCS 678 (955)
Q Consensus 611 ~~p~~td~~fl~kl~~~~~~~~~f~~~~------------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~ 678 (955)
++|++||++|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.|+.+++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999888775432 2479999999999999999999999999999999999999
Q ss_pred cchh-HHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhh
Q 002188 679 CHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVL 757 (955)
Q Consensus 679 ~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~ 757 (955)
++++ .+|......... .......+..||+++||.||++||++|++|+||||||||||..++|+.||..+|+
T Consensus 561 n~~i~~lf~~~~~~~~~--------~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~ 632 (717)
T cd01382 561 DKFLRSLFESSTNNNDT--------KQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQIL 632 (717)
T ss_pred hHHHHHHhccccccccc--------cccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHH
Confidence 8865 577543211000 0011123457999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccc
Q 002188 758 QQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGML 837 (955)
Q Consensus 758 ~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~L 837 (955)
+||||+||||+|||+|.|||+|++|.+|++||+.|++......|++..|+.||+.+++++++|++|+||||||.++++.|
T Consensus 633 ~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~l 712 (717)
T cd01382 633 SQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEF 712 (717)
T ss_pred HHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHH
Confidence 99999999999999999999999999999999999988776678999999999999999999999999999999999999
Q ss_pred ccc
Q 002188 838 EDT 840 (955)
Q Consensus 838 E~~ 840 (955)
|+.
T Consensus 713 e~~ 715 (717)
T cd01382 713 DQI 715 (717)
T ss_pred HHH
Confidence 875
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=7.4e-183 Score=1640.20 Aligned_cols=664 Identities=53% Similarity=0.868 Sum_probs=628.3
Q ss_pred CCCcCCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHH
Q 002188 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (955)
Q Consensus 165 np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~ 242 (955)
||+..++++||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999988643 899999999
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccE
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~ 318 (955)
+||+.|+.+++||||||||||||||||++|++|+||+.++++. +|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 9999999999999999999999999999999999999998653 799999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHH
Q 002188 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAE 398 (955)
Q Consensus 319 i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 398 (955)
++|+|+.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++++|++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCc-cccCChhHHHHHHHhcCCCHHHHHHhhccceeee
Q 002188 399 QFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH-VEPVADEGLITVAKLIGCDIGELKLALSTRKMRV 477 (955)
Q Consensus 399 ~f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~-~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~ 477 (955)
+|++++.||+.|||+++|+..||+|||||||||||+|...++++. ..+.+.+.++.||+||||++++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999987654432 3478889999999999999999999999999999
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHH
Q 002188 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (955)
Q Consensus 478 ~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkL 557 (955)
++|.++++++++||.++||+|||+||++||+|||.+||++|.+.. ....+||||||||||+|+.|||||||||||||||
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998753 4568999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC
Q 002188 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 637 (955)
Q Consensus 558 Q~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~ 637 (955)
|++|++++|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.++
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C---CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcchh-HHhhccccccCCCCccCCCccCCCCCCCCcc
Q 002188 638 R---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLS 713 (955)
Q Consensus 638 ~---~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~t 713 (955)
+ +..|+|+||||+|+|+++||++||+|.++++++++|++|++++. .+|...... .+...+..|
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-------------~~~~~~~~t 546 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESN-------------AGSKKRFRT 546 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhcccccc-------------ccccCCCCc
Confidence 3 67899999999999999999999999999999999999999864 567543211 011234589
Q ss_pred HHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccc
Q 002188 714 VATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLL 793 (955)
Q Consensus 714 v~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~ 793 (955)
|+++|+.||+.||++|++|+||||||||||+.++|+.||.++|++||||+||||++||+|.|||+|++|.+|++||++|+
T Consensus 547 v~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~ 626 (677)
T smart00242 547 VGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLL 626 (677)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC--CChHHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccc
Q 002188 794 LESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 842 (955)
Q Consensus 794 ~~~~~~--~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~ 842 (955)
+...+. .|+++.|+.||+.+++++.+|++|+||||||.+++..||+.|+
T Consensus 627 ~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 627 PDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 976543 3579999999999999999999999999999999999999874
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.9e-182 Score=1617.99 Aligned_cols=634 Identities=39% Similarity=0.684 Sum_probs=595.4
Q ss_pred CccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002188 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (955)
Q Consensus 171 ~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m 248 (955)
++|||+.|++|||++||++|+.||.++.||||+|++|||||||+.+|+|++++++.|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999886544 899999999999999
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC--CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~--~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~ 326 (955)
...++||||||||||||||||++|++|+||+.++++. .|+++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999999987643 79999999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhH-hhcCCCCcccCccccCCCcccCCCcc----hHHHHH
Q 002188 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALR-EKLNLMSAKEYKYLRQSSCYSINGVD----DAEQFR 401 (955)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 401 (955)
|+|+||+|++||||||||++|++||||||||||||+|++++++ +.|+|.++.+|+||++++|..+++++ |+++|+
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999998999999999887666654 578999
Q ss_pred HHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCC---CCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeC
Q 002188 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (955)
Q Consensus 402 ~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 478 (955)
++++||+.|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.++.||+||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 23567888999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC----CCcceeeeeccccCcCCCCCChHHHHHhhhh
Q 002188 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYAN 554 (955)
Q Consensus 479 ~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~----~~~~~IgILDifGFE~f~~NsfEQLcINyaN 554 (955)
|+.++++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987532 2357999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCC
Q 002188 555 ERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCF 634 (955)
Q Consensus 555 EkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f 634 (955)
||||++||+++|+.||++|++|||+|..|+|.||++|||||++||.|||++|||||++|+|||++|++|+++++++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998864 445
Q ss_pred cCCC--CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCc
Q 002188 635 RGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKL 712 (955)
Q Consensus 635 ~~~~--~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (955)
.+++ ...|+|+||||+|+|+++||++||+|.++.|++++|++| +
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------------------~ 525 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------------------Q 525 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------------------c
Confidence 4443 568999999999999999999999999999999999865 4
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcc
Q 002188 713 SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFL 792 (955)
Q Consensus 713 tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L 792 (955)
||+++||.||.+||++|++|+||||||||||+.|+|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|
T Consensus 526 tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l 605 (653)
T cd01379 526 TVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFL 605 (653)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 793 LLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 793 ~~~~~~-~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
++.... ..+.++.|+.||..+++ ++|++||||||||.++++.||.+|
T Consensus 606 ~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 606 AYRFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 876533 34678899999998776 579999999999999999999875
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.2e-182 Score=1711.48 Aligned_cols=771 Identities=43% Similarity=0.698 Sum_probs=702.1
Q ss_pred ccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEE-EeCCCcccCCCCcCCCccccccCcCcCchhHH
Q 002188 109 SDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLK-VKSENLVSANPDILDGVDDLMQLSYLNEPSVL 187 (955)
Q Consensus 109 ~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL 187 (955)
.++.+|+.++ +||||+++++|+.|.|.+..+++|+|.+.+|.+++ |+.+++.|+|||.++.+|||+.|++||||+||
T Consensus 22 ~~~~~~d~kk--~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa~LT~lNeasVL 99 (1930)
T KOG0161|consen 22 AQSRPFDSKK--WVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMAELTFLNEASVL 99 (1930)
T ss_pred ccccchhhcc--eeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHHHhcccChHHHH
Confidence 3345777776 89999999999999999998888989988777776 99999999999999999999999999999999
Q ss_pred HHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCC
Q 002188 188 YNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGA 265 (955)
Q Consensus 188 ~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGA 265 (955)
|||++||.++.||||+|..||+||||+++|||+++++++|+++.+. ||||||||+.||++|+.+++||||+|+|||||
T Consensus 100 ~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGA 179 (1930)
T KOG0161|consen 100 HNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGA 179 (1930)
T ss_pred hhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCC
Confidence 9999999999999999999999999999999999999999998654 99999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhccCC--------CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeee
Q 002188 266 GKTETAKIAMQYLAALGGG--------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTF 337 (955)
Q Consensus 266 GKTe~~K~il~yL~~~~~~--------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~y 337 (955)
||||+||.||+|||.++++ +.++++|+++||||||||||+|++|+|||||||||+|+|+.+|.|+||.|++|
T Consensus 180 GKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~y 259 (1930)
T KOG0161|consen 180 GKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETY 259 (1930)
T ss_pred CcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHH
Confidence 9999999999999999876 47899999999999999999999999999999999999999999999999999
Q ss_pred ecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCC-cccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhh
Q 002188 338 LLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKED 416 (955)
Q Consensus 338 LLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e 416 (955)
|||||||++|+++|||||||||||+|.++.++..|.|++ +.+|.|+.++.. .++|+||+++|+.+..||++|||+++|
T Consensus 260 LLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E 338 (1930)
T KOG0161|consen 260 LLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEE 338 (1930)
T ss_pred HHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999975 999999999877 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHH
Q 002188 417 QESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRD 496 (955)
Q Consensus 417 ~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rd 496 (955)
+.+||+|+||||||||+.|......+.+.+.+.+.++.+|.||||+.++|.++++.+.+++|++.+.+..+.+|+..+..
T Consensus 339 ~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~ 418 (1930)
T KOG0161|consen 339 KISIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVE 418 (1930)
T ss_pred HHHHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHH
Confidence 99999999999999999999877777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHc
Q 002188 497 ALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQD 576 (955)
Q Consensus 497 alak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~E 576 (955)
+|||++|+|||.|||.+||.+|+.. ....+|||||||+|||+|..||||||||||+||+|||+||+|||.+||++|.+|
T Consensus 419 alAk~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~E 497 (1930)
T KOG0161|consen 419 ALAKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQRE 497 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHh
Confidence 9999999999999999999999976 456789999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccC-CcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCCcCCC----CCCcEEEccccc
Q 002188 577 GIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER----DKSFTVSHYAGE 650 (955)
Q Consensus 577 gI~~~~i~f~-dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~-~~~~~f~~~~----~~~F~I~HyAG~ 650 (955)
||.|++|+|. |-++|||||++ |.||+|+|||||++|++||.+|+.||...| +.||.|.+++ ..+|.|.||||+
T Consensus 498 gIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~ 576 (1930)
T KOG0161|consen 498 GIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGT 576 (1930)
T ss_pred CCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecce
Confidence 9999999997 99999999998 689999999999999999999999999888 8899998873 579999999999
Q ss_pred ceeccchhhhhccccchHHHHHHHhhcCcc-hhHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHH
Q 002188 651 VIYDTTGFLEKNRDLLHLDSIELLSSCSCH-LPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRL 729 (955)
Q Consensus 651 V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~-l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L 729 (955)
|.|+++||++||+|+++..++.+|..|++. ++.+|......... ...+.. ...+..+.+.||+..++.||+.||.+|
T Consensus 577 V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~-~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l 654 (1930)
T KOG0161|consen 577 VDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAA-AKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTL 654 (1930)
T ss_pred eccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchh-hhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999976 46788652211000 000000 012334456899999999999999999
Q ss_pred hccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcccccccc--CCChHHHHH
Q 002188 730 ESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSV 807 (955)
Q Consensus 730 ~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~--~~d~~~~~~ 807 (955)
++|+|||||||.||+.|.|+.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.+...+ ..|.+..|+
T Consensus 655 ~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~ 734 (1930)
T KOG0161|consen 655 RSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACE 734 (1930)
T ss_pred ccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999944444333 257788999
Q ss_pred HHHHHcCCCCcceeecceeeeeeecccccccccccccccch-hhhhhhhhcchhhHhhhhhh---hhhHHHHHHHHHHHH
Q 002188 808 AILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELR---RGIVALQSFIRGEKI 883 (955)
Q Consensus 808 ~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aa-v~IQa~~Rg~laRk~~~~~r---~aav~IQs~~Rg~~a 883 (955)
.|+..+.++..-|++|.||||||.|+++.||.+|...+..+ +.+|+.+|||++|+.|.++. .|+.+||+.+|.|+.
T Consensus 735 ~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~ 814 (1930)
T KOG0161|consen 735 KILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK 814 (1930)
T ss_pred HHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887664 45666666666666655433 245555555555544
Q ss_pred HHH
Q 002188 884 RKE 886 (955)
Q Consensus 884 Rr~ 886 (955)
.+.
T Consensus 815 lr~ 817 (1930)
T KOG0161|consen 815 LRT 817 (1930)
T ss_pred hcc
Confidence 433
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=9.3e-181 Score=1625.98 Aligned_cols=668 Identities=51% Similarity=0.827 Sum_probs=620.4
Q ss_pred CccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 002188 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (955)
Q Consensus 171 ~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m 248 (955)
++|||+.|++|||++||++|+.||.+|+||||+|++|||||||+++|+|++++++.|+++... |||||+||++||++|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999987654 899999999999999
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCC--CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~--~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~ 326 (955)
+.+++||||||||||||||||++|++|+||+.++++ ..++++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 379999999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHH
Q 002188 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEA 406 (955)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~a 406 (955)
|.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|+++.+|+||++++|..+++++|+++|++++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCc--cccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEe
Q 002188 407 LDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH--VEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQ 484 (955)
Q Consensus 407 l~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~--~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~ 484 (955)
|+.|||+++++.+||+|||||||||||+|...++++. +.+.+.+.++.||.||||++++|.++|+++++.+++|.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 9999999999999999999999999999997665443 67889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHh
Q 002188 485 NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRH 564 (955)
Q Consensus 485 ~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~ 564 (955)
+++++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 234679999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC---CCCC
Q 002188 565 LFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE---RDKS 641 (955)
Q Consensus 565 ~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~---~~~~ 641 (955)
+|+.||++|++|||+|+.|+|.||++|||||+++|.|||++|||||.+|+++|++|++||++.+++|++|... .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886332 2579
Q ss_pred cEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 002188 642 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 720 (955)
Q Consensus 642 F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~ 720 (955)
|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+..+.. ....+....+..||+++|+.
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~--~~~~~~~~~~~~tv~~~f~~ 557 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTG--STSSKGKKKKGQTVGSQFRT 557 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccc--cccccccccCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999986 45775432111100000 01112223456899999999
Q ss_pred HHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccCC
Q 002188 721 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 800 (955)
Q Consensus 721 ~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~ 800 (955)
||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||++||+|.|||+|++|.+|++||++|++...+..
T Consensus 558 qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~ 637 (679)
T cd00124 558 SLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKV 637 (679)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876533
Q ss_pred C-hHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 801 D-PLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 801 d-~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
+ ....|+.+|..+++++++|++|+||||||++++..||..|
T Consensus 638 ~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 638 SLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred CCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 2 2334999999999999999999999999999999999875
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.1e-179 Score=1613.65 Aligned_cols=667 Identities=30% Similarity=0.475 Sum_probs=592.4
Q ss_pred ccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHH
Q 002188 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (955)
Q Consensus 172 ~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~ 249 (955)
||||+.|++|||++||++|+.||.+|.||||+|++|||||||+.+|+|++++++.|+++... |||||+||+.||++|+
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988654 8999999999999999
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCC
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~---~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~ 326 (955)
.+++||||||||||||||||++|+||+||+.++++. ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 999999999999999999999999999999998653 23468999999999999999999999999999999999999
Q ss_pred CCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCC-cccCCCcchHHHHHHHHH
Q 002188 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS-CYSINGVDDAEQFRIVVE 405 (955)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~~~~ 405 (955)
|.|+||+|++|||||||||+|++||||||||||||+|+++++|++|+|.+..++.++.... +...++++|+++|+++++
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754433333322 233567899999999999
Q ss_pred HhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCce----
Q 002188 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT---- 481 (955)
Q Consensus 406 al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~---- 481 (955)
||+.|||+++|+..||+|||||||||||+|... .+.+.+.+.+.++.||+||||+.++|.++|+++++.++++.
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 23467788899999999999999999999999887766432
Q ss_pred ---------EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCC------CChH
Q 002188 482 ---------IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR------NSFE 546 (955)
Q Consensus 482 ---------~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~------NsfE 546 (955)
+..++++++|.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 33467889999999999999999999999999999998753 3457999999999999974 8999
Q ss_pred HHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCceeccc-CCcHhHHHhhhcCC--------------CccccccccccC
Q 002188 547 QFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKP--------------LGLLSLLDEEST 611 (955)
Q Consensus 547 QLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f-~dN~~~ldlie~kp--------------~Gil~lLDee~~ 611 (955)
|||||||||||||+||++||+.||+||++|||+|+.+.+ .||++|||||+++| .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999986655 69999999999865 599999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCCCcCC--------CCCCcEEEccccc--ceeccchhhhhccccc-hHHHHHHHhhcCcc
Q 002188 612 FPNGTDLTFANKLKQHLNSNPCFRGE--------RDKSFTVSHYAGE--VIYDTTGFLEKNRDLL-HLDSIELLSSCSCH 680 (955)
Q Consensus 612 ~p~~td~~fl~kl~~~~~~~~~f~~~--------~~~~F~I~HyAG~--V~Y~~~gfleKN~D~l-~~d~~~ll~~S~~~ 680 (955)
+|++||++|++||++++++|++|... ....|+|+||||+ |+|+++||+|||||.+ ..|++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 99999999999999999988887541 2468999999995 9999999999999965 68999999999987
Q ss_pred h-hHHhhccccc-----cCCCCccC----CCccC---------CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEecc
Q 002188 681 L-PQIFASNMLS-----QSNKPVVG----PLYKA---------GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIK 741 (955)
Q Consensus 681 l-~~lf~~~~~~-----~~~~~~~~----~~~~~---------~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIk 741 (955)
+ ..+|...... .+.....+ +.++. +....++.||+++||.||++||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 5 6788543200 00000000 00000 0112345799999999999999999999999999999
Q ss_pred CCCCCC----------------------CCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcccccccc-
Q 002188 742 PNNFQS----------------------PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA- 798 (955)
Q Consensus 742 PN~~k~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~- 798 (955)
||+.|. |+.||.++|++||||+||||+|||+|+|||+|++|.+|++||++|.+..++
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999874 789999999999999999999999999999999999999999999886542
Q ss_pred ------CCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccc
Q 002188 799 ------SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 841 (955)
Q Consensus 799 ------~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R 841 (955)
..|+++.|+.||..+++++++|++|+||||||.+++..||+.|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 2478999999999999999999999999999999999999876
No 18
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.6e-181 Score=1509.55 Aligned_cols=700 Identities=40% Similarity=0.676 Sum_probs=653.3
Q ss_pred cCCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 002188 168 ILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (955)
Q Consensus 168 ~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay 245 (955)
...|||||+-|+-++|.+|..||+.||..+.||||+|++||+||||+.+|+|+++.|+.|+++... ||||||+|+++|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l 321 (955)
++|...++|||||||||||||||+++|.||+|++.+++++ .|.+-||++||+|||||||||+||+||||||||++|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei 175 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEI 175 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEE
Confidence 9999999999999999999999999999999999998765 577889999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHH
Q 002188 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (955)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (955)
+|+..|..+|++|.+|||||||||.|.+|||||||||||++|++.+.|..|++..++.|.||+.++|+.++++||..+|+
T Consensus 176 ~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq 255 (1106)
T KOG0162|consen 176 QFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ 255 (1106)
T ss_pred EecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeC---
Q 002188 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG--- 478 (955)
Q Consensus 402 ~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~--- 478 (955)
+++.||+++|+.++||+.||++||+|||||||.|.+. ++.+.+.+.+.++-.|.||||+...|++.||.|.|...
T Consensus 256 ~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee--~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 256 ETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE--GNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee--CCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999973 34567888899999999999999999999999999763
Q ss_pred -CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHH
Q 002188 479 -NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (955)
Q Consensus 479 -~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkL 557 (955)
.|.+..+|+++||...||||||+||.+||||||++||.+|.........+||||||||||+|+.||||||||||.||||
T Consensus 334 kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKL 413 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKL 413 (1106)
T ss_pred cceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999865555678999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhc-CCCccccccccccCCC----CCChHHHHHHHHHHhCCCC
Q 002188 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-KPLGLLSLLDEESTFP----NGTDLTFANKLKQHLNSNP 632 (955)
Q Consensus 558 Q~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~-kp~Gil~lLDee~~~p----~~td~~fl~kl~~~~~~~~ 632 (955)
||.|++-+++.|||||.+|||.|++|+|.||+-++||||. .|.||+++|||-|... .|.|.+|+.+|+..+++||
T Consensus 414 QQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~p 493 (1106)
T KOG0162|consen 414 QQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHP 493 (1106)
T ss_pred HHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999995 5889999999999653 5679999999999999999
Q ss_pred CCcCCCCCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCC
Q 002188 633 CFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQK 711 (955)
Q Consensus 633 ~f~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (955)
+|..- ...|+|+||||+|+||++||.+||||.|..|+++||.+|+++| ..+|....... +..+.
T Consensus 494 hF~~~-s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d--------------skrRP 558 (1106)
T KOG0162|consen 494 HFESR-SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD--------------SKRRP 558 (1106)
T ss_pred ccccc-cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc--------------ccCCC
Confidence 99754 6789999999999999999999999999999999999999886 45775443221 12345
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhc
Q 002188 712 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGF 791 (955)
Q Consensus 712 ~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~ 791 (955)
+|.+.+.+.|-++|+++|.+|+||||||||||+.|.|+.||...|++|+.|+|+-|.|||||+||.+|..|+.|++||.+
T Consensus 559 ~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyai 638 (1106)
T KOG0162|consen 559 PTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAI 638 (1106)
T ss_pred CCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHhee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCC--ChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccccccccc-hhhhhhhhhcchhhHhhhhh
Q 002188 792 LLLESVASQ--DPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKEL 867 (955)
Q Consensus 792 L~~~~~~~~--d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~-~l~~LE~~R~~~l~a-av~IQa~~Rg~laRk~~~~~ 867 (955)
|.|..++++ |.+++|+.||....+++++||+|.||||++.+ .+..||++|++.... |.+||++||.|++|+.|.++
T Consensus 639 lsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ 718 (1106)
T KOG0162|consen 639 LSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKM 718 (1106)
T ss_pred cCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998865 78899999999999999999999999999996 489999999999865 67899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 002188 868 RRGIVALQSFIRGEKIRKEY 887 (955)
Q Consensus 868 r~aav~IQs~~Rg~~aRr~~ 887 (955)
|.-+..| .-|.+.||+|
T Consensus 719 ree~t~l---l~gKKeRRr~ 735 (1106)
T KOG0162|consen 719 REEATKL---LLGKKERRRY 735 (1106)
T ss_pred HHHHHHH---hcchHHHHHH
Confidence 8866544 2345555555
No 19
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=8.7e-175 Score=1587.99 Aligned_cols=659 Identities=50% Similarity=0.843 Sum_probs=578.6
Q ss_pred ccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCC--CCCchhHHHHHHHHHHH
Q 002188 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI--ESPHVYAITDTAIREMI 249 (955)
Q Consensus 172 ~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~--~~PHiyavA~~Ay~~m~ 249 (955)
||||+.|++|||++||++|+.||.+|.||||+|++|||||||+++|+|+++.++.|+++.. .|||||++|++||++|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 7999999999999999999999999999999999999999999999999999999998754 38999999999999999
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEE
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHF 323 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~------~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F 323 (955)
++++||||||||||||||||++|+||+||+.++.+. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 999999999999999999999999999999998764 48999999999999999999999999999999999999
Q ss_pred cCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHH
Q 002188 324 SETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIV 403 (955)
Q Consensus 324 ~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~ 403 (955)
+.+|.++||+|++||||||||+.+++||||||||||||+|+++++|++|+|.++.+|+||+++++..+++.+|+++|+++
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEE
Q 002188 404 VEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (955)
Q Consensus 404 ~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~ 483 (955)
++||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999998876778889999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHH
Q 002188 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (955)
Q Consensus 484 ~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 563 (955)
++++++||.++||+|||+||++||+|||++||.+|++.......+||||||||||+|..||||||||||||||||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999986645678999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHcCCCceeccc-CCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCCcCC----
Q 002188 564 HLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGE---- 637 (955)
Q Consensus 564 ~~F~~Eq~eY~~EgI~~~~i~f-~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~-~~~~~f~~~---- 637 (955)
++|+.||++|.+|||+|..++| .||++|||||+++|.|||++|||||.+|+++|++|++++.+.+ +++++|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999 888888654
Q ss_pred --CCCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCC--------CCccCCCccCCC
Q 002188 638 --RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSN--------KPVVGPLYKAGG 706 (955)
Q Consensus 638 --~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~--------~~~~~~~~~~~~ 706 (955)
....|+|+||||+|+|+++||++||+|.++++++++|++|++.+ ..+|......... ....+......+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 36799999999999999999999999999999999999999885 5677654320000 000011111222
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHH
Q 002188 707 ADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFA 786 (955)
Q Consensus 707 ~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~ 786 (955)
...+..||+++|+.||++||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccc-----CCChHHHHHHHHHHcCCCCcceeecceeeeee
Q 002188 787 RRYGFLLLESVA-----SQDPLSVSVAILHQFNILPEMYQVGYTKLFFR 830 (955)
Q Consensus 787 ~RY~~L~~~~~~-----~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr 830 (955)
+||++|++.... ..++++.|+.||+.++++.++|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 36889999999999999999999999999997
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.6e-173 Score=1449.53 Aligned_cols=786 Identities=36% Similarity=0.593 Sum_probs=698.3
Q ss_pred cEEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHHHHHHhhcC
Q 002188 120 LQSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQD 197 (955)
Q Consensus 120 ~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~ 197 (955)
-.||++|+.++|..|.|+.+..++.+++.- .|.+++-..++++++..+...+|||-|+|-+|||+++|+|++-||.+|
T Consensus 5 r~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~ 84 (1259)
T KOG0163|consen 5 RLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKD 84 (1259)
T ss_pred ceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhccC
Confidence 369999999999999999999998888643 677888888999999888888999999999999999999999999999
Q ss_pred cceeecCCeeEeecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH
Q 002188 198 MIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 198 ~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 274 (955)
.||||+.+||||||||+.+| +|+++.+..|++++.+ ||||||||+.|||.|...+.+||||+||||||||||++|.+
T Consensus 85 kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~v 164 (1259)
T KOG0163|consen 85 KIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAV 164 (1259)
T ss_pred chhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHH
Confidence 99999999999999999998 9999999999999876 89999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-CCCCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcc
Q 002188 275 MQYLAALG-GGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERA 353 (955)
Q Consensus 275 l~yL~~~~-~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERN 353 (955)
|+||+.-- +++.|+++||.+||||||||||||+||+||||||||++|||+.+|.++|+-+.+||||||||+.|+.+|||
T Consensus 165 LrYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERN 244 (1259)
T KOG0163|consen 165 LRYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERN 244 (1259)
T ss_pred HHHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccc
Confidence 99999863 34589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcc--------------------------cCCCcchHHHHHHHHHHh
Q 002188 354 YHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCY--------------------------SINGVDDAEQFRIVVEAL 407 (955)
Q Consensus 354 fHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~--------------------------~~~~~dD~~~f~~~~~al 407 (955)
|||||||++|++++++++|.|..|++|+||+.+-.. .-+-+||..+|+.+..||
T Consensus 245 YHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al 324 (1259)
T KOG0163|consen 245 YHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKAL 324 (1259)
T ss_pred hhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHH
Confidence 999999999999999999999999999999843210 012368999999999999
Q ss_pred hhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCC--CccccC--ChhHHHHHHHhcCCCHHHHHHhhccceeee-----C
Q 002188 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE--NHVEPV--ADEGLITVAKLIGCDIGELKLALSTRKMRV-----G 478 (955)
Q Consensus 408 ~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~--~~~~~~--~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~-----~ 478 (955)
+.+|+|++|...||+++|||||||||+|++..++ +.|.+. +..+|..+|+|||++.++|...|+.|.|.+ +
T Consensus 325 ~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~k 404 (1259)
T KOG0163|consen 325 KLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFK 404 (1259)
T ss_pred HhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999976532 345554 456899999999999999999999999865 3
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHH
Q 002188 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (955)
Q Consensus 479 ~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ 558 (955)
|..|.+|+.+.+|..+||||||++|++||||||.+||+++.... +..+||||||.|||-|.+||||||||||||||||
T Consensus 405 GTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~--St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ 482 (1259)
T KOG0163|consen 405 GTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFEK--STFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQ 482 (1259)
T ss_pred ceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccccc--ccceeEEEeeccceeeecccHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999998643 4579999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC-
Q 002188 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE- 637 (955)
Q Consensus 559 ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~- 637 (955)
+|||++|++.||+.|++||+....|+|.||++||+|||.|..|||.|||||..+|+.++..|....++.+++|=....+
T Consensus 483 ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PR 562 (1259)
T KOG0163|consen 483 KFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPR 562 (1259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887765332222
Q ss_pred -------C----CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCC
Q 002188 638 -------R----DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAG 705 (955)
Q Consensus 638 -------~----~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~ 705 (955)
| ...|.|+||||.|.|.+.-|+|||.|.|+..+-.|+..|++++ +.+|.+...+ +..+..
T Consensus 563 kSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t-~a~~~~------- 634 (1259)
T KOG0163|consen 563 KSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSST-SAKQTR------- 634 (1259)
T ss_pred hhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCC-cccccc-------
Confidence 1 4579999999999999999999999999999999999999885 6788653211 111111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHH
Q 002188 706 GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 785 (955)
Q Consensus 706 ~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF 785 (955)
.+.+.-||+.+|+.||..||+.|++|..|||||||||..+.|..||...++.||+|+|+..++++.+.|||.|.+|.+.
T Consensus 635 -gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 635 -GKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred -ceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 1334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccccchhhhhhhhhcchhhHhhh
Q 002188 786 ARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLK 865 (955)
Q Consensus 786 ~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQa~~Rg~laRk~~~ 865 (955)
+.-|+-.+|+.....||+-.|+++.+.++++..+|++|.||||+|.+..+..+++....-.....|-+.+.-|+.+.+|+
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999889999999999999999999999999999999999988888776655555555556677788887777
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002188 866 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQS 925 (955)
Q Consensus 866 ~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs 925 (955)
+..-+ .+.+-+.-.++..+..+++++|+..|||++|+++++...-..++-+
T Consensus 794 k~q~~---------a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 794 KSQYG---------ALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred Hhhhh---------hhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 65432 2222222223344556778888888888888888776554444433
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.2e-173 Score=1531.79 Aligned_cols=748 Identities=53% Similarity=0.849 Sum_probs=706.1
Q ss_pred CCCCcCCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCC-CCCHHHHHHhhc-CCCCCCchhHHH
Q 002188 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKS-KSIESPHVYAIT 241 (955)
Q Consensus 164 ~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~-~~~~~PHiyavA 241 (955)
.||+. .++|||+.|++|||++||+||+.||..+.||||.|.+|||||||+.+| +|+++.+..|+. .....||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 45666 899999999999999999999999999999999999999999999999 999999999992 223379999999
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCC--C-CchhhhhhhhHHHHhhcCcccCCCCCCCCcccE
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--S-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~--~-~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~ 318 (955)
+.||+.|.....||+||||||||||||+++|++|+||++++++ . +||++||++|||+||||||||.+||||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999987 3 899999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHH
Q 002188 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAE 398 (955)
Q Consensus 319 i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 398 (955)
++|+|+..|+|.||+|.|||||||||+.++++|||||||||+|+|.+ +++++|+|..+..|.|++|++|..+++++|+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeC
Q 002188 399 QFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (955)
Q Consensus 399 ~f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 478 (955)
+|..++.||..+||+.++|+.||++||||||||||+|...++++......+ .+..+|+|||++++.|...|+.|.+.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999998776644444433 8999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHH
Q 002188 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (955)
Q Consensus 479 ~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ 558 (955)
++.++++++..+|...||++||.||++||+|+|++||.+|..++.....+||||||||||.|..|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999866666789999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC
Q 002188 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER 638 (955)
Q Consensus 559 ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~ 638 (955)
|+||+|+|+.||+||.+|||+|..|+|.||++|+++|++ |.|++++|||||.+|.++|++|..||.+.+.+|++|.+++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr 478 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPR 478 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCC
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999886
Q ss_pred --CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCccHHH
Q 002188 639 --DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVAT 716 (955)
Q Consensus 639 --~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 716 (955)
...|+|.||||+|+|++.+||+||||.+++++++++..|++.+...+......++ .+.+++.||++
T Consensus 479 ~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~------------~~~~~~~tv~s 546 (862)
T KOG0160|consen 479 LSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADS------------SAKSKRSTVGS 546 (862)
T ss_pred CCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcch------------hhhhhcccHHH
Confidence 4589999999999999999999999999999999999999987665543221111 13567799999
Q ss_pred HHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcccccc
Q 002188 717 KFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLES 796 (955)
Q Consensus 717 ~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~ 796 (955)
+|+.+|..||.+|++|.||||||||||..+.|..|+..+|++||||+||||++||.++|||.|.+|.||+.||++|+| .
T Consensus 547 ~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~ 625 (862)
T KOG0160|consen 547 QFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-N 625 (862)
T ss_pred HHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred ccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccccch-hhhhhhhhcchhhHhhhhhhhhhHHHH
Q 002188 797 VASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQ 875 (955)
Q Consensus 797 ~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aa-v~IQa~~Rg~laRk~~~~~r~aav~IQ 875 (955)
....|++..|+.+|+..+++ .|++|+||||+|.++++.||..|...+.++ +.||+.+|+|+.|+.|..+|++++.||
T Consensus 626 ~~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q 703 (862)
T KOG0160|consen 626 DSASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQ 703 (862)
T ss_pred hhcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567799999999999887 999999999999999999999999988765 569999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002188 876 SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 934 (955)
Q Consensus 876 s~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr 934 (955)
+.+||+++|+.. . +..||+.||+.||+|..|++|...+.+++.+|+.+|++++|+
T Consensus 704 ~~~rG~~~r~~~--~--~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 704 AYSRGVLARRET--E--REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhhhHHHHHHhh--H--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999922 2 678999999999999999999999999999999999999998
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.8e-119 Score=1095.36 Aligned_cols=771 Identities=36% Similarity=0.500 Sum_probs=660.5
Q ss_pred cCCCCcCCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCC-CCCHHHHHHhhcCCCC--CCchhH
Q 002188 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYA 239 (955)
Q Consensus 163 ~~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHiya 239 (955)
...++...+++||++|++++|+.++++|..||..+.||||+|+||++||||+.+| +|.++++..|.++..+ |||||+
T Consensus 54 ~~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa 133 (1062)
T KOG4229|consen 54 ALHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFA 133 (1062)
T ss_pred cccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhh
Confidence 4556678899999999999999999999999999999999999999999999999 9999999999966544 799999
Q ss_pred HHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhcc-CC-CCchhhhhhhhHHHHhhcCcccCCCCCCCCccc
Q 002188 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG-GG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGK 317 (955)
Q Consensus 240 vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~-~~-~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK 317 (955)
+|+.||++|++...||||+|||||||||||+|+++++||+.++ +. +.++..|+.+||+|||||||+|++|||||||||
T Consensus 134 ~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk 213 (1062)
T KOG4229|consen 134 IADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGK 213 (1062)
T ss_pred hhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhh
Confidence 9999999999999999999999999999999999999999999 43 378999999999999999999999999999999
Q ss_pred EEEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccC-CCcch
Q 002188 318 LIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSI-NGVDD 396 (955)
Q Consensus 318 ~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~-~~~dD 396 (955)
||++.|..+|.|.||++..||||||||+.|+.+||||||||++++|++.++++.+.|..+.+|.||+++.+..+ ++.++
T Consensus 214 ~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~ 293 (1062)
T KOG4229|consen 214 YIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDD 293 (1062)
T ss_pred eEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCC--CCccccCChhHHHHHHHhcCCCHHHHHHhhccce
Q 002188 397 AEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRK 474 (955)
Q Consensus 397 ~~~f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~ 474 (955)
..+|..+..||..+||+.+++.+|++++|||||+|||+|..... .+.+.+.+.+.++.+|.||.++++.|.+++|.++
T Consensus 294 ~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~ 373 (1062)
T KOG4229|consen 294 VAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARV 373 (1062)
T ss_pred HHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999976433 3446788999999999999999999999999999
Q ss_pred eeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC-CcceeeeeccccCcCCCCCChHHHHHhhh
Q 002188 475 MRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRR-TGRSISILDIYGFESFDRNSFEQFCINYA 553 (955)
Q Consensus 475 ~~~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~-~~~~IgILDifGFE~f~~NsfEQLcINya 553 (955)
....||.+..+++.++|.++|||+||+||++||.|||.+||..+...... ...+||||||||||+|..|+|||||||||
T Consensus 374 ~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~A 453 (1062)
T KOG4229|consen 374 NVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLA 453 (1062)
T ss_pred eeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864321 35899999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCC
Q 002188 554 NERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPC 633 (955)
Q Consensus 554 NEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~ 633 (955)
||+||++||+|||..||+||..|+|+|..|.|.||..|+|+|..||.||+.+||||+.+|+++|.+++.|++..++.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CcCC---CCCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcchhHHhhcccc--------------------
Q 002188 634 FRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNML-------------------- 690 (955)
Q Consensus 634 f~~~---~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l~~lf~~~~~-------------------- 690 (955)
|..+ ....|+|.||||.|.|++.||+|||+|.++.|+..++++|.+.+...+.+...
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 5433 25799999999999999999999999999999999999987655432211000
Q ss_pred --------ccCCCCc---------------cC----C------CccCCCC--------------------C-C-------
Q 002188 691 --------SQSNKPV---------------VG----P------LYKAGGA--------------------D-S------- 709 (955)
Q Consensus 691 --------~~~~~~~---------------~~----~------~~~~~~~--------------------~-~------- 709 (955)
.....+. .+ | ..-.+|. . .
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 0000000 00 0 0000110 0 0
Q ss_pred -----------C---------------C---------------------------------------------------c
Q 002188 710 -----------Q---------------K---------------------------------------------------L 712 (955)
Q Consensus 710 -----------~---------------~---------------------------------------------------~ 712 (955)
. + .
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 0 0 0
Q ss_pred cHHHH----------------HHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCC
Q 002188 713 SVATK----------------FKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGF 776 (955)
Q Consensus 713 tv~~~----------------f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gy 776 (955)
.++.. +......++..+....|.|++|++-|..+....|+...|.+|+++.|+++..++++.++
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~ 853 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLY 853 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccc
Confidence 01111 11122235555666778888888888777788899999999999999999999999999
Q ss_pred CcccChHHHHHHhhccccccccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccc-c-chhhhhhh
Q 002188 777 PTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTL-H-GILRVQSC 854 (955)
Q Consensus 777 p~R~~~~eF~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l-~-aav~IQa~ 854 (955)
+..+++..|...+.+..+.... .........+....++++.|++++|+.......++..-.... . .+...|++
T Consensus 854 ~~~i~~~~~~~~~~i~~~~~~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 928 (1062)
T KOG4229|consen 854 FAEISPQDSVNQSRIGLPETVD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKW 928 (1062)
T ss_pred cccccchhccccccccCCccch-----hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHH
Confidence 9999999999999998873211 111222233344667899999999998876554444332221 1 25668999
Q ss_pred hhcchhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002188 855 FRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 934 (955)
Q Consensus 855 ~Rg~laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr 934 (955)
++....|+.+.++..+.+.+| |+.+..|+.-........+|.-+|..|+.+..+..+.-.+++++.+|+.+++...+.
T Consensus 929 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 1006 (1062)
T KOG4229|consen 929 FRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTM 1006 (1062)
T ss_pred HHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhh
Confidence 999999999999999999999 888888874432334557889999999999999999999999999999998887777
Q ss_pred HHHHHh
Q 002188 935 CSGDIC 940 (955)
Q Consensus 935 ~~~~l~ 940 (955)
.+...+
T Consensus 1007 ~~~~~~ 1012 (1062)
T KOG4229|consen 1007 IFAADK 1012 (1062)
T ss_pred hHHHhh
Confidence 665544
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.75 E-value=1.1e-08 Score=106.38 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCCCc----hhhhhhhhHHHHhhc-CcccCCCCC
Q 002188 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGI----EYEILKTNPILEAFG-NAKTSRNDN 311 (955)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~~i----~~~il~snpiLEAFG-NAkT~~N~N 311 (955)
||+.+..++..|+ .+.|+||+..|+||||||+|+.--. ...++ -+.+++.....+++. +|.|.+|++
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~ 79 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEH 79 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHHHHHHHHhhccccccccccCCCCc
Confidence 8888889999998 5689999999999999998875211 00011 122667788888999 999999999
Q ss_pred CCCcccEEEEEEcCCCCee
Q 002188 312 SSRFGKLIEIHFSETGKIS 330 (955)
Q Consensus 312 SSRFGK~i~l~F~~~g~i~ 330 (955)
|||+..+++|++.......
T Consensus 80 SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 80 SSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred cCcccEEEEEEEEEeecCC
Confidence 9999999999997654443
No 24
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.90 E-value=1.3e-05 Score=98.59 Aligned_cols=96 Identities=25% Similarity=0.318 Sum_probs=75.5
Q ss_pred cchhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------h-----------------------hhh
Q 002188 846 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL-------Q-----------------------RHR 895 (955)
Q Consensus 846 ~aav~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~-------~-----------------------~~~ 895 (955)
.++..||..+|+|+.|+.|..++.-++.||+.+||+..|+.|.++. + ...
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 4567899999999999999999999999999999999998886531 1 222
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 002188 896 AAVVIQRQIKSRVAR--QKLKNIKYSSIMIQSVIRGWLVRRCSGDICL 941 (955)
Q Consensus 896 AAi~IQ~~~R~~~~R--r~y~~~r~Aai~IQs~~Rg~laRr~~~~l~~ 941 (955)
||+.||..+|-|..- ..|.++-+|++.||+.+|.+.+|.+|+++..
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~~ 938 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLLL 938 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 556666666666655 5567778899999999999999999988754
No 25
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=97.76 E-value=7.2e-05 Score=58.70 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=37.6
Q ss_pred EEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCC
Q 002188 121 QSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSEN 160 (955)
Q Consensus 121 ~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~ 160 (955)
.||+|+++++|..|+|++..++.++|.+.+|++.+|+.++
T Consensus 3 ~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 3 WVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp EEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred EEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 7999999999999999999999999999999999998764
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.75 E-value=8.6e-05 Score=91.45 Aligned_cols=80 Identities=25% Similarity=0.251 Sum_probs=67.0
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 002188 861 RLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDIC 940 (955)
Q Consensus 861 Rk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr~~~~l~ 940 (955)
.++-..+..+++.||+.+|+|..|+.|..+ +.+++.||+.+||+++|+... ...|++.||..||+++.|+.|..++
T Consensus 666 ~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~---r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~ 741 (862)
T KOG0160|consen 666 ARRSDVLSAAKVLIQRQIRGYLARKKFLQL---RSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALI 741 (862)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344445566888899999999999999655 469999999999999998444 6679999999999999999998887
Q ss_pred hhhh
Q 002188 941 LLKS 944 (955)
Q Consensus 941 ~~~~ 944 (955)
....
T Consensus 742 ~~~~ 745 (862)
T KOG0160|consen 742 PASI 745 (862)
T ss_pred HHHH
Confidence 6654
No 27
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.11 E-value=0.00058 Score=45.42 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002188 896 AAVVIQRQIKSRVARQKL 913 (955)
Q Consensus 896 AAi~IQ~~~R~~~~Rr~y 913 (955)
||++||+.||||++|+.|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444444444433
No 28
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.08 E-value=0.00067 Score=45.11 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 002188 917 KYSSIMIQSVIRGWLVRRCSG 937 (955)
Q Consensus 917 r~Aai~IQs~~Rg~laRr~~~ 937 (955)
++|++.||+.|||+++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999984
No 29
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.91 E-value=0.002 Score=76.47 Aligned_cols=62 Identities=24% Similarity=0.198 Sum_probs=48.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002188 866 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 938 (955)
Q Consensus 866 ~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr~~~~ 938 (955)
.+..-++.||+.||||++|.+|++++ .++++|+ +||.|. ++..+..||..+||+..++.|++
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K-------~ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYK-------LKSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHH-------HHHHHHHHHHHHHhhhhccccCC
Confidence 34456889999999999999997775 4666777 888553 34567789999999999988754
No 30
>PTZ00014 myosin-A; Provisional
Probab=96.51 E-value=0.0059 Score=76.72 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002188 894 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRC 935 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr~ 935 (955)
...+..||++||||++|++|++.+.+++.||+.||+|++++.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999999999875
No 31
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.33 E-value=0.0098 Score=75.77 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=73.8
Q ss_pred hhhhhhhhcchhhHhhhhh-------hhhhHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 002188 849 LRVQSCFRGHQARLCLKEL-------RRGIVALQSFIRGEKI---RKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK- 917 (955)
Q Consensus 849 v~IQa~~Rg~laRk~~~~~-------r~aav~IQs~~Rg~~a---Rr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r- 917 (955)
.++|+..||+..|..+... -..+.-||++|||++. +..|. .....-++.+|+..||+++|+.|.+..
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~--~~~~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL--DSAKKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH--HHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3459999999888776543 2468889999999885 11221 113456789999999999999886653
Q ss_pred ------HHHHHHHHHHhhHHHHHHHHHHhhhhhccchh
Q 002188 918 ------YSSIMIQSVIRGWLVRRCSGDICLLKSVESKV 949 (955)
Q Consensus 918 ------~Aai~IQs~~Rg~laRr~~~~l~~~~~~~~~~ 949 (955)
.++++||+.+|+..+|..|+.+.-......-+
T Consensus 617 ~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s~npsl~~ 654 (1401)
T KOG2128|consen 617 YFKDNMTKIIKIQSKIRKFPNRKDYKLLFTSENPSLET 654 (1401)
T ss_pred HHHHhhhhHHHHHHHHHhcccchHHHHHhcCCCCchhh
Confidence 38899999999999999999988776654433
No 32
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.13 E-value=0.0043 Score=71.31 Aligned_cols=64 Identities=30% Similarity=0.418 Sum_probs=45.9
Q ss_pred eecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHH-HHHHHH
Q 002188 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK-IAMQYL 278 (955)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K-~il~yL 278 (955)
++|||...| |+..+-.-++.+...|-|- .-+.-|..-..||+||++||.|||||+-.- .++.|-
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~-----~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~ 87 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWE-----QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE 87 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHH-----hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH
Confidence 399999998 7777777776665555443 234456666789999999999999997543 334443
No 33
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.61 E-value=0.011 Score=41.38 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 002188 895 RAAVVIQRQIKSRVARQKL 913 (955)
Q Consensus 895 ~AAi~IQ~~~R~~~~Rr~y 913 (955)
.+|++||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3555566666666555555
No 34
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.55 E-value=0.014 Score=40.95 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 002188 918 YSSIMIQSVIRGWLVRRCS 936 (955)
Q Consensus 918 ~Aai~IQs~~Rg~laRr~~ 936 (955)
.+++.||+.|||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4666677777777777665
No 35
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.31 E-value=0.014 Score=55.68 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|+|.||||||+.+|.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998876
No 36
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.03 E-value=0.053 Score=69.47 Aligned_cols=106 Identities=25% Similarity=0.234 Sum_probs=80.0
Q ss_pred hhhhhhhhcchhhHhhhhhh-----hhhHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHH----HHHHHH
Q 002188 849 LRVQSCFRGHQARLCLKELR-----RGIVALQSFIRGEKIRKEYALVL----QRHRAAVVIQRQIKSRVA----RQKLKN 915 (955)
Q Consensus 849 v~IQa~~Rg~laRk~~~~~r-----~aav~IQs~~Rg~~aRr~~~~l~----~~~~AAi~IQ~~~R~~~~----Rr~y~~ 915 (955)
+..|+..||...|...-.+. .-..++|+..||+..|..+.... .+.....-||+.|||++. ...+..
T Consensus 511 is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~ 590 (1401)
T KOG2128|consen 511 ISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDS 590 (1401)
T ss_pred hhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHH
Confidence 44788888888776544332 23455599999999998775432 245678899999999984 223344
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhh-ccchhhcccc
Q 002188 916 IKYSSIMIQSVIRGWLVRRCSGDICLLKS-VESKVILINS 954 (955)
Q Consensus 916 ~r~Aai~IQs~~Rg~laRr~~~~l~~~~~-~~~~~i~~~~ 954 (955)
...-++.+|++.||.++|+.+.+..+..+ ..+++|+|||
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs 630 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQS 630 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHH
Confidence 56689999999999999999988766665 8899999997
No 37
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.49 E-value=0.029 Score=53.99 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 45789999999999999999999987764
No 38
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.27 E-value=0.097 Score=67.57 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=49.8
Q ss_pred cchhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002188 857 GHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCS 936 (955)
Q Consensus 857 g~laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr~~ 936 (955)
+.+.-++-..+...++.||+.|||+..|++|....++.+++..+|..||-+ .+..+.....+.+.+|..||....|+.+
T Consensus 734 ~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~r~~~ 812 (1463)
T COG5022 734 AALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEY 812 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hhcccchHHHhHHHhhHHhHHHhhHHHH
Confidence 445566667777899999999999999999976655444444444444433 2223333334555555555555555554
Q ss_pred HH
Q 002188 937 GD 938 (955)
Q Consensus 937 ~~ 938 (955)
+.
T Consensus 813 ~~ 814 (1463)
T COG5022 813 RS 814 (1463)
T ss_pred HH
Confidence 43
No 39
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.20 E-value=0.061 Score=51.48 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.......+++|.|++|+|||+.++.+.+.+.
T Consensus 14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3344578999999999999999999998885
No 40
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.12 E-value=0.037 Score=52.73 Aligned_cols=22 Identities=50% Similarity=0.519 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|+|-+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 41
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.08 E-value=0.034 Score=56.63 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.6
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
...+.+.+|+|.|++|+|||...+.+++++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456678999999999999999999999888763
No 42
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.97 E-value=0.041 Score=56.39 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.|+|+|+||||||+.++.|...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999877653
No 43
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.90 E-value=0.093 Score=57.24 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.....++|+|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3356899999999999999999876653
No 44
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.65 E-value=0.062 Score=46.61 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.39 E-value=0.59 Score=63.34 Aligned_cols=71 Identities=25% Similarity=0.218 Sum_probs=51.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHH
Q 002188 865 KELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRC 935 (955)
Q Consensus 865 ~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~---r~Aai~IQs~~Rg~laRr~ 935 (955)
..+..-++.+|+.+|||++|+.|.+...+..|+.+||..+|.|...+.|.-. .+.--.|++.-+.-..++.
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~ 843 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAK 843 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 3444567888999999999999998888889999999999999888755443 2333345555444444333
No 46
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.28 E-value=0.076 Score=56.00 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=24.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..-|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998876
No 47
>PRK06696 uridine kinase; Validated
Probab=93.27 E-value=0.11 Score=55.56 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 239 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+|+..+.. ....+--|.|+|.||||||+.++.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345555432 3556788999999999999999999998854
No 48
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.05 E-value=0.079 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
...|+|+|+|||||||.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 688999999999999999877764
No 49
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.03 E-value=0.21 Score=53.68 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.4
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
...++.-|.|+|.||||||+.++.+...|...++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 3467889999999999999999999999877554
No 50
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.01 E-value=0.073 Score=55.98 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=22.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.|+|+|++|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988864
No 51
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.01 E-value=0.071 Score=50.98 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~ 279 (955)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999984
No 52
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.99 E-value=0.08 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il 275 (955)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45889999999999999999975
No 53
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.85 E-value=0.069 Score=50.41 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+.|+|.|++|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 54
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.84 E-value=0.16 Score=50.15 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....|+++|+.|||||+.+|.+.+.|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 446789999999999999999998877
No 55
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.78 E-value=0.12 Score=52.33 Aligned_cols=29 Identities=38% Similarity=0.429 Sum_probs=25.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999998764
No 56
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.74 E-value=0.13 Score=58.33 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=28.4
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.++..+. .|||+|..|||||+..+.++.++..
T Consensus 136 ~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 136 VIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3455565554 5999999999999999999998864
No 57
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=92.72 E-value=0.18 Score=63.36 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred chhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002188 847 GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIR--KEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 924 (955)
Q Consensus 847 aav~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg~~aR--r~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQ 924 (955)
++..+|+.+|||..|+...+.-.|++.||..+|-|+.- +.|.+ ..+|+++||+.+|.+.+|..|+++ .+.+|
T Consensus 868 rwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r---~~~A~~~VQsm~rs~~a~qqyrR~---~~~~~ 941 (975)
T KOG0520|consen 868 RWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEER---LTRAVVRVQSMFRSPKAQQQYRRL---LLVYE 941 (975)
T ss_pred HHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHH---HHHHH
Confidence 45678888899988888888888889999998888765 22322 357999999999999999777665 44455
Q ss_pred HHHh
Q 002188 925 SVIR 928 (955)
Q Consensus 925 s~~R 928 (955)
-+.+
T Consensus 942 ~~~~ 945 (975)
T KOG0520|consen 942 QYQE 945 (975)
T ss_pred HHHh
Confidence 4444
No 58
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.72 E-value=0.078 Score=55.53 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.|+|.|.||||||+.++.+++.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998875
No 59
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.70 E-value=0.085 Score=55.10 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 60
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.69 E-value=0.081 Score=55.24 Aligned_cols=26 Identities=50% Similarity=0.546 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
|-|+|.||||||+.++.|...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999997644
No 61
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.65 E-value=0.11 Score=54.88 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+...|.|+|.||||||+.++.|...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999999999877653
No 62
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.63 E-value=0.13 Score=56.63 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=27.8
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++..++... .-.|+|+|++|||||++.+.++.++..
T Consensus 71 ~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 71 IFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 345555433 346999999999999999999998854
No 63
>PRK06762 hypothetical protein; Provisional
Probab=92.46 E-value=0.11 Score=52.45 Aligned_cols=25 Identities=48% Similarity=0.595 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|+|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999888
No 64
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.42 E-value=0.08 Score=59.11 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=25.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
++.+.+=|-||||||||++++-||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4578899999999999999999999885
No 65
>PRK08233 hypothetical protein; Provisional
Probab=92.38 E-value=0.085 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.-|.|+|.||||||+.++.+.++|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999887763
No 66
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.24 E-value=0.1 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999997655
No 67
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.20 E-value=0.11 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|+|++|||||+.++.+.+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 68
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.20 E-value=0.21 Score=52.93 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+-.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345555555667889999999999999999999988764
No 69
>PRK06547 hypothetical protein; Provisional
Probab=92.17 E-value=0.21 Score=51.50 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.7
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....-|+|+|.||||||+.++.+.+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5668899999999999999999998764
No 70
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.11 E-value=0.1 Score=52.59 Aligned_cols=23 Identities=52% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 71
>PF12846 AAA_10: AAA-like domain
Probab=92.03 E-value=0.13 Score=56.56 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
|..++|.|.||||||++++.++..+...+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 467999999999999999999998888663
No 72
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.92 E-value=0.11 Score=53.14 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=25.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+.+..|+|+|.||||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988864
No 73
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.84 E-value=0.13 Score=53.23 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|.|+|.||||||+.++.+.+.|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.83 E-value=0.14 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998887
No 75
>PTZ00301 uridine kinase; Provisional
Probab=91.82 E-value=0.13 Score=54.79 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~ 279 (955)
|-|+|-||||||+.++.|.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999999987764
No 76
>PRK07261 topology modulation protein; Provisional
Probab=91.81 E-value=0.13 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999985543
No 77
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.80 E-value=0.19 Score=56.37 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=27.5
Q ss_pred HHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.++.. ...|+|+|..|||||+.++.+++++..
T Consensus 125 L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3444443 357999999999999999999999876
No 78
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.71 E-value=0.13 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888754
No 79
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.59 E-value=0.12 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=23.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999988774
No 80
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=91.49 E-value=0.31 Score=57.27 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 236 HiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.++.+.-+|...++.-.+.|.+.|.|.||+|||+..++|+.+.
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 3455566788888777889999999999999999988876543
No 81
>PRK08118 topology modulation protein; Reviewed
Probab=91.32 E-value=0.16 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+-|+|.|.+|||||+.+|.|-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987763
No 82
>PF05729 NACHT: NACHT domain
Probab=91.31 E-value=0.18 Score=50.15 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=24.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
-++|+|+.|+|||+.++.++..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 489999999999999999998887754
No 83
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.29 E-value=0.18 Score=51.84 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
++++.|.||.||||.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999997
No 84
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=91.17 E-value=0.15 Score=56.40 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCChhHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~i 274 (955)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999988766
No 85
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.16 E-value=0.18 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999987654
No 86
>PF13245 AAA_19: Part of AAA domain
Probab=91.02 E-value=0.28 Score=43.59 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788999999999999988888875
No 87
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.94 E-value=0.14 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~y 277 (955)
+.|+|+|.||||||+..+.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999998544
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.92 E-value=0.36 Score=52.16 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 239 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..|-.+.+.+.......+++|.|++|+|||+.+..+.+++..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334456666665566679999999999999999988887765
No 89
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.92 E-value=0.16 Score=58.01 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=27.5
Q ss_pred HHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..+.. .....|+|+|++|||||++.+.++.++..
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 444443 23577999999999999999999988753
No 90
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.90 E-value=0.24 Score=56.71 Aligned_cols=37 Identities=32% Similarity=0.570 Sum_probs=30.1
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+++.......+.+++|+|++|+|||.+++.+++.|..
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344444677889999999999999999999998854
No 91
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.90 E-value=0.27 Score=50.31 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=25.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...|+|.|.+|||||+.++.+...|..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999965
No 92
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.84 E-value=0.17 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998754
No 93
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.83 E-value=0.43 Score=53.32 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.6
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3557788899999999999999887777644
No 94
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.73 E-value=0.16 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998865
No 95
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=90.58 E-value=0.21 Score=47.16 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|.|.|++|.|||..++.+++.|..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999988865
No 96
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.57 E-value=0.23 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=23.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 45699999999999999999988874
No 97
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.56 E-value=0.16 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|.|.||||||+.++.+-+.|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998876
No 98
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.49 E-value=0.2 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
..+.-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999988887654
No 99
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.48 E-value=0.36 Score=50.61 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=28.0
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
...++..|+|+|.||||||+.++.+...|...+
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 346678999999999999999999999886543
No 100
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.38 E-value=0.23 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|+|+|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998864
No 101
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.37 E-value=0.22 Score=51.08 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999965
No 102
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.34 E-value=0.19 Score=52.48 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|.|+|-||||||+.++.+.+.|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999987764
No 103
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.28 E-value=0.18 Score=55.34 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+....|+|+|+.|||||++.+.++.++-.-
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 347889999999999999999999887654
No 104
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.21 E-value=0.37 Score=55.52 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=37.5
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 224 ~~~Y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.++|+-.... .+|+-.. .+++... +-+++++++|+.|+|||+.++.+.+.|-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4566644432 4666544 4444444 5689999999999999999999999885
No 105
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.20 E-value=0.21 Score=57.43 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
...-|+|+|++|||||++.+.+++++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46889999999999999999999998653
No 106
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.18 E-value=0.18 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~ 279 (955)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999877664
No 107
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.15 E-value=0.32 Score=49.85 Aligned_cols=27 Identities=37% Similarity=0.359 Sum_probs=23.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+++|.|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999988888877544
No 108
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.09 E-value=0.25 Score=50.97 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
--|.|+|.||||||+..+.++..|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 368899999999999999999999764
No 109
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.02 E-value=0.31 Score=55.54 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...|+|+|+.|||||+..+.++.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 35599999999999999999988874
No 110
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.93 E-value=0.29 Score=48.14 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~ 281 (955)
++|+|++|+|||+.++.++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999998773
No 111
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.92 E-value=0.18 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 469999999999999999998865
No 112
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.91 E-value=0.2 Score=54.30 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIA 274 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~i 274 (955)
-|||||-||||||++.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999988765
No 113
>PRK06217 hypothetical protein; Validated
Probab=89.85 E-value=0.23 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 39999999999999999997765
No 114
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.72 E-value=0.29 Score=48.68 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999998754
No 115
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.71 E-value=0.25 Score=57.13 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.--|+|+|++|||||++.+.+++|+...
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~ 176 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGET 176 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4479999999999999999999999753
No 116
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.53 E-value=0.22 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
--+++-|+||||||++.|+|-+-+.-
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 45788999999999999999665543
No 117
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.42 E-value=0.28 Score=49.74 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~ 279 (955)
|.|||.+|||||+-++.+-++|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999999875
No 118
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.33 E-value=0.38 Score=55.65 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=29.1
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
........+.+++|+|++|+|||..++.+++.+..
T Consensus 47 ~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 47 RPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444667789999999999999999999988754
No 119
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.27 E-value=0.28 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
+|+|.|.+|||||+.+|.+-+.|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.17 E-value=0.49 Score=53.35 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=27.3
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+...+....++++|++|+|||+.++.+.+++..
T Consensus 29 ~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 29 RAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444555457999999999999999999988864
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.15 E-value=0.69 Score=49.34 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..+..++|.||+|+|||+.++.+.+.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999998877553
No 122
>PRK12377 putative replication protein; Provisional
Probab=88.84 E-value=0.66 Score=50.73 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=34.1
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
-|+++.|..-...... ..++++|+|.+|+|||..+..|.++|..-
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3556665554444432 35799999999999999999999999864
No 123
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.82 E-value=0.32 Score=51.81 Aligned_cols=24 Identities=46% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
-|-|+|-||||||+-+|.|..-|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999987775
No 124
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.81 E-value=0.33 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998776
No 125
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.78 E-value=0.39 Score=55.31 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 239 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 577788888887788999999999999999999999888865
No 126
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=88.74 E-value=0.31 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~y 277 (955)
|+|+|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999988665
No 127
>PRK04182 cytidylate kinase; Provisional
Probab=88.71 E-value=0.31 Score=49.51 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999997765
No 128
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.40 E-value=0.3 Score=53.46 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
.+..++-|-||||+|||++.|.|+.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 45678899999999999999999987764443
No 129
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=88.39 E-value=0.38 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
...|+|.|+||+||||++-.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988876
No 130
>PRK04040 adenylate kinase; Provisional
Probab=88.38 E-value=0.4 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..-|+|+|.+|+|||+.++.+.+.|.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35699999999999999999988873
No 131
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.27 E-value=0.44 Score=57.13 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=26.8
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.++.+...+ .--|+|+|++|||||++...+++++.
T Consensus 233 ~l~~~~~~~-~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRRP-HGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 445555332 34689999999999999998888874
No 132
>PRK13764 ATPase; Provisional
Probab=88.24 E-value=0.46 Score=58.07 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...|+|+|.+|||||+++..++.|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345999999999999999999999864
No 133
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=88.23 E-value=0.38 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
++.|+|.|.+|||||+.++.+.+.|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.14 E-value=0.48 Score=53.12 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=26.1
Q ss_pred HHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 244 AIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 244 Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....... .+-+..++++|++|+|||+.++.+.+.+
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3334333 3346788889999999999999997765
No 135
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=88.05 E-value=0.72 Score=47.60 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 239 avA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
++...+-..|. ..++-.|-++|-||||||+.+..+-+-|...+
T Consensus 9 ~v~~~~r~~~~-~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 9 SVTKQEREALK-GQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred ccCHHHHHHHh-CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 44444433333 45578999999999999999999988887765
No 136
>PHA00729 NTP-binding motif containing protein
Probab=88.04 E-value=0.76 Score=49.43 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 240 vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+|....+.+.. ..-..|+|+|.+|+|||+.++.|.+.+.
T Consensus 4 ~~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 4 LAKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444444443 3446899999999999999999998765
No 137
>PRK14527 adenylate kinase; Provisional
Probab=88.01 E-value=0.39 Score=49.93 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+.+.|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578899999999999999999977663
No 138
>PRK07667 uridine kinase; Provisional
Probab=87.81 E-value=0.74 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
--|-|+|-||||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36679999999999999999988865
No 139
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.78 E-value=0.44 Score=49.25 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988663
No 140
>PRK00698 tmk thymidylate kinase; Validated
Probab=87.78 E-value=0.67 Score=48.26 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988553
No 141
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.77 E-value=0.53 Score=47.92 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=24.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999888753
No 142
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=87.68 E-value=0.43 Score=49.49 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|.|.||||||+-+|.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998874
No 143
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.68 E-value=0.48 Score=52.17 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|.|+|-||||||+.++.+.+.|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999888754
No 144
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=87.46 E-value=0.64 Score=54.97 Aligned_cols=62 Identities=29% Similarity=0.507 Sum_probs=40.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC-------CchhhhhhhhHHHHh--hcCcccC-CCCCCCCcccEEE
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEA--FGNAKTS-RNDNSSRFGKLIE 320 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~-------~i~~~il~snpiLEA--FGNAkT~-~N~NSSRFGK~i~ 320 (955)
..+=+|+|+||||+||-..++.| +.+....++. .|-.. ++|+ ||..|-. .-.+.+|-|+|-+
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~I-H~~S~R~~~PFVavNcaAip~~------l~ESELFGhekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAI-HQASPRAKGPFIAVNCAAIPEN------LLESELFGHEKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHH-HhhCcccCCCceeeecccCCHH------HHHHHhhcccccCcCCcccccCcceeE
Confidence 45778999999999998888766 3333332222 23332 4554 9988821 2346788999864
No 145
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=87.40 E-value=0.87 Score=44.42 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+....|+++|+=|||||+-+|-+.+.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 557899999999999999999998887
No 146
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.29 E-value=0.66 Score=39.73 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.6
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~ 276 (955)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988776643
No 147
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.25 E-value=0.47 Score=53.76 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=24.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
...|+|+|.+|||||+..+.++.++...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~ 175 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQ 175 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4679999999999999999999887543
No 148
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=87.25 E-value=0.57 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
|.|+|.+|||||+.+..++..|...+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 149
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=87.23 E-value=1.1 Score=45.13 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.4
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-..+=.|+++|+=|||||+-+|-+++.|..
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 355678999999999999999999999864
No 150
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.22 E-value=0.96 Score=50.50 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.5
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.....+..-.++|+|+.|+|||+.++.+.+.+.
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445555555445699999999999999999988774
No 151
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=87.20 E-value=0.31 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
-+++.+++.|.||+|||+....++..
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34589999999999999988877654
No 152
>PRK08727 hypothetical protein; Validated
Probab=87.10 E-value=0.94 Score=48.89 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.5
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
....+.|+|.|+||+|||+.+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34567899999999999999999888877643
No 153
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.06 E-value=0.45 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999987544
No 154
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=87.03 E-value=0.46 Score=51.25 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+..+.=|.||||||||+.++.++-+...-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCC
Confidence 5678899999999999999999987765533
No 155
>PRK06761 hypothetical protein; Provisional
Probab=86.98 E-value=0.44 Score=53.02 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999854
No 156
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=86.96 E-value=0.45 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCChhHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~i 274 (955)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 157
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=86.89 E-value=0.5 Score=48.82 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.-|||+|.||||||+.++.+++-+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4699999999999999999987653
No 158
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=86.88 E-value=0.49 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~ 279 (955)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988763
No 159
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=86.88 E-value=0.38 Score=50.64 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=29.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhh-H----HHHhhcCc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTN-P----ILEAFGNA 304 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~~~~~i~~~il~sn-p----iLEAFGNA 304 (955)
|.|+|.+|||||+.++++-++=+..=....+...+++-+ + |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999999977543111101234555555532 3 66667653
No 160
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.80 E-value=0.52 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|++.|++|.|||+.++.+.+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998877
No 161
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=86.80 E-value=0.5 Score=49.00 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|++|||||+..|.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999888643
No 162
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.78 E-value=0.74 Score=55.07 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=37.5
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 225 EAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 225 ~~Y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+|+-+... .+|+-..-.+|+ ...+-+|+++++|..|.|||++++.+-+.|-..
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 455544322 466655333333 234568999999999999999999999888554
No 163
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=86.67 E-value=0.53 Score=52.12 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
-+-|+|+|+||+||||++=-+++-=..+
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rghrL 172 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRGHRL 172 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhccce
Confidence 4679999999999999998887654433
No 164
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=86.62 E-value=0.5 Score=49.99 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999886544
No 165
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=86.61 E-value=0.5 Score=49.84 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999887544
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=86.55 E-value=0.49 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467899999999999999999987654
No 167
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.43 E-value=0.54 Score=49.62 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887654
No 168
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.42 E-value=0.66 Score=51.64 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+...|+|.|.+|+|||+++..+..|++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998764
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=86.42 E-value=0.97 Score=47.47 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=31.6
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|++.++. ..++.++|.|..|+|||++.+.+.+.+...+
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g 46 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAAG 46 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 45666654 4578899999999999999999999888743
No 170
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=86.38 E-value=0.4 Score=57.48 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++-.+.=|.||||||||+.+|.|+..+.-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34567788999999999999999887755
No 171
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=86.37 E-value=0.89 Score=46.87 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999988853
No 172
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=86.36 E-value=0.42 Score=46.43 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..+.+.|.|++|||||+..+.+...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 467899999999999998887755443
No 173
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=86.33 E-value=0.53 Score=49.99 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|+..+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4568899999999999999999876553
No 174
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.31 E-value=0.41 Score=53.92 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 57899999999999999999988763
No 175
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=86.26 E-value=0.51 Score=53.64 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 457899999999999999999987654
No 176
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=86.26 E-value=0.42 Score=54.92 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
--++-+-||||||||.|+.-||+-|..-
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 4567889999999999999999999873
No 177
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=86.24 E-value=0.57 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999887654
No 178
>PRK14974 cell division protein FtsY; Provisional
Probab=86.24 E-value=1.2 Score=50.79 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=27.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+++..|+++|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887643
No 179
>PRK15453 phosphoribulokinase; Provisional
Probab=86.23 E-value=0.62 Score=51.68 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.=-|.|+|-||||||+.++.+.+-|.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344689999999999999988865543
No 180
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.22 E-value=0.78 Score=53.83 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.|+... ....+.++..+...+++|.|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455443 3556777777878899999999999999999987654
No 181
>PRK08356 hypothetical protein; Provisional
Probab=86.22 E-value=0.49 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCChhHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~ 276 (955)
--|+|+|.+|||||+.++.+-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998843
No 182
>PRK06893 DNA replication initiation factor; Validated
Probab=86.21 E-value=1.2 Score=47.94 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+|.. .+..+.+.+ ....+-+++|.|+||+|||+.+..+-+.+...
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4543 334444444 34556789999999999999999998887654
No 183
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=86.16 E-value=0.57 Score=49.97 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998776
No 184
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.14 E-value=1.3 Score=47.45 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCc--eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 240 ITDTAIREMIRDEV--NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 240 vA~~Ay~~m~~~~~--~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|-.|-..+..... -..++|.|+||+|||+....+..++....
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 44455556655432 35799999999999999888888776643
No 185
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=86.10 E-value=0.42 Score=57.28 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=26.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..-+..=|-||||||||+++..||.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 446788899999999999999999998754
No 186
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.05 E-value=0.94 Score=53.91 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=37.6
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 225 EAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 225 ~~Y~~~~~~----~PHiyavA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
++|+-+... ..|+.+. .+.+...+ -.+++|++|+.|.|||++++.+.+.|-..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 455543322 4666653 44444444 47889999999999999999999988653
No 187
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=86.00 E-value=0.57 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999987654
No 188
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=85.95 E-value=0.92 Score=55.04 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.4
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+....+|.|+|.||+|+|||..++.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456689999999999999999999987653
No 189
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=85.93 E-value=0.51 Score=53.72 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.||||||||+..|.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 457899999999999999999987655
No 190
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=85.90 E-value=0.83 Score=46.53 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+.|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999887643
No 191
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=85.90 E-value=0.57 Score=48.92 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+---+.++|.||||||+..|+|+.-.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34567899999999999999996543
No 192
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.89 E-value=1.1 Score=51.66 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 240 ITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 240 vA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-|...+..+... +-+++++|+|+.|.|||+.++.+.++|..
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 345566666554 44899999999999999999999998866
No 193
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.87 E-value=0.39 Score=58.06 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++.+.|.|.|+||||||+..|.++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56899999999999999999999877644
No 194
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=85.86 E-value=0.47 Score=54.52 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
++.|++=|-||||||||+.-..+++-+.+.
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 678999999999999999999998877654
No 195
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=85.85 E-value=0.58 Score=48.96 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.++-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887543
No 196
>PRK03839 putative kinase; Provisional
Probab=85.80 E-value=0.63 Score=47.76 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|.|-+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987766
No 197
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=85.79 E-value=0.56 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 467899999999999999999997654
No 198
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=85.77 E-value=0.59 Score=49.25 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999998886554
No 199
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.77 E-value=0.85 Score=40.57 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
|+++|..|+|||+.+..+...|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78999999999999999999998843
No 200
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=85.77 E-value=0.58 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.||++|.+|||||+.++.+.+.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 3679999999999999999998765
No 201
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.75 E-value=0.98 Score=54.35 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+|+...-..| +...+.+|+++++|+.|.|||++++.+.+.|-..
T Consensus 26 q~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46655433333 2345568999999999999999999999988653
No 202
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.68 E-value=0.63 Score=47.83 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887544
No 203
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=85.64 E-value=0.61 Score=48.39 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=31.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHH-HhccCCCCchhhhhhhh-----HHHHhhc
Q 002188 257 IIISGESGAGKTETAKIAMQYL-AALGGGSGIEYEILKTN-----PILEAFG 302 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL-~~~~~~~~i~~~il~sn-----piLEAFG 302 (955)
|.|+|-.|||||+.++++-+.. ..+=....+..+++..+ .|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHC
Confidence 8899999999999998876654 22212234555555533 3788888
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=85.63 E-value=0.72 Score=50.54 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..-.+++.|++|+|||+.++.+-+.|...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999886543
No 205
>PRK14531 adenylate kinase; Provisional
Probab=85.62 E-value=0.71 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998776
No 206
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.61 E-value=0.61 Score=50.25 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999887544
No 207
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.57 E-value=0.45 Score=50.96 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999998876553
No 208
>PRK14528 adenylate kinase; Provisional
Probab=85.55 E-value=0.71 Score=48.00 Aligned_cols=24 Identities=46% Similarity=0.632 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999997766
No 209
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.49 E-value=0.85 Score=51.68 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=27.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+..+.|.+.|.+|||||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999987644
No 210
>PRK08116 hypothetical protein; Validated
Probab=85.49 E-value=1.3 Score=48.86 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=34.4
Q ss_pred CchhHHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 235 PHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+.++.|..--.+.... ..+..++|.|++|+|||..+..|.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34555555544444332 345679999999999999999999999875
No 211
>PLN03025 replication factor C subunit; Provisional
Probab=85.42 E-value=1.1 Score=50.56 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=29.8
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..+.+...+.-.+++++|++|+|||+.++.+.+.|.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 355666666667899999999999999999998874
No 212
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=85.40 E-value=0.78 Score=47.15 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|+|.|..|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999865
No 213
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=85.37 E-value=0.66 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998854
No 214
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.28 E-value=0.65 Score=50.44 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+=.|+|-|.||||||+..+.++.++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 346999999999999999999988754
No 215
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.26 E-value=1.2 Score=46.00 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 245 IREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 245 y~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
++++... +-++++++.|++|.|||+.++.+.+.|...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4445544 457999999999999999999999988653
No 216
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=85.23 E-value=0.88 Score=43.80 Aligned_cols=26 Identities=46% Similarity=0.747 Sum_probs=23.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
|+++|.+|+|||+.+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 217
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=85.21 E-value=0.68 Score=49.08 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988875443
No 218
>PLN02318 phosphoribulokinase/uridine kinase
Probab=85.19 E-value=1 Score=54.75 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHHHHcC-ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 235 PHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
-|=|-++-+|-+-+..+. ..--|-|+|.||||||+.++.|...+
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 455667777776666533 34677899999999999999998765
No 219
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=85.19 E-value=0.61 Score=53.00 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+-|-||||||||+..|.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456889999999999999999998765
No 220
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=85.18 E-value=0.61 Score=49.22 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 457889999999999999999886543
No 221
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.05 E-value=1.1 Score=53.67 Aligned_cols=52 Identities=27% Similarity=0.525 Sum_probs=36.6
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 225 EAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 225 ~~Y~~~~~~----~PHiyavA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++|+-+... ++|+ ....+.+...+ -++++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455544432 5776 33455555544 4588999999999999999999887754
No 222
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.96 E-value=0.71 Score=48.78 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.. +.+.|.|+||||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999886554
No 223
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=84.95 E-value=0.93 Score=55.67 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=30.1
Q ss_pred HHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 245 IREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 245 y~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..++.. .+-.|++|++|.+|.|||++++.+.+.|-..
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 444443 4568999999999999999999999998654
No 224
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=84.95 E-value=0.68 Score=49.74 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999886543
No 225
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=84.94 E-value=1.6 Score=48.29 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHH---------cCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 237 VYAITDTAIREMIR---------DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 237 iyavA~~Ay~~m~~---------~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+..+...++..++. .+..+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 44555555555542 23468999999999999999999988887643
No 226
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.88 E-value=0.68 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999887666
No 227
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.85 E-value=0.68 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999999987654
No 228
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.83 E-value=1.1 Score=54.30 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=37.6
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 224 ~~~Y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++|+-.... .+|+...-. ++... +-++++|++|+.|.|||+.++.+.++|-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~----~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLV----HALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHH----HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3555544322 477665433 34443 55788999999999999999999999865
No 229
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=84.83 E-value=1.1 Score=50.37 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=25.4
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+=.|+|+|-||||||+.+..+.++|
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999888
No 230
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=84.79 E-value=0.71 Score=51.85 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
.-.|+|.|+||+||||++--+++.
T Consensus 146 G~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 146 GIGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 367899999999999999888876
No 231
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.79 E-value=0.74 Score=51.15 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=50.7
Q ss_pred HHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCC--------CCCchhHHHHHHHHHHHHcCceeEEEEcCC
Q 002188 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI--------ESPHVYAITDTAIREMIRDEVNQSIIISGE 262 (955)
Q Consensus 191 ~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~--------~~PHiyavA~~Ay~~m~~~~~~QsIiisGE 262 (955)
.+.-.-|--||..|.-=+-||-|+...-|+- .++--.. .-|-|+ +.+. ...+--|+++|.
T Consensus 66 ~~~~E~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~-------~~~~-~~~~GLILVTGp 133 (353)
T COG2805 66 EENGELDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIV-------RELA-ESPRGLILVTGP 133 (353)
T ss_pred HHhcceeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHH-------HHHH-hCCCceEEEeCC
Confidence 3334457789999988888998876432210 0010000 113332 2322 345678999999
Q ss_pred CCCChhHHHHHHHHHHHhc
Q 002188 263 SGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 263 SGAGKTe~~K~il~yL~~~ 281 (955)
.|||||+|.--++.|+-.-
T Consensus 134 TGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 134 TGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred CCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999653
No 232
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=84.73 E-value=0.6 Score=58.35 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=24.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..|.|-|.|+||||||+.+|+++....--
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46889999999999999999998766543
No 233
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=84.73 E-value=0.7 Score=49.76 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999998886544
No 234
>PRK13768 GTPase; Provisional
Probab=84.71 E-value=0.86 Score=49.90 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|+|+|.+|+|||+.++.+..+|+..+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998754
No 235
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=84.67 E-value=0.74 Score=48.39 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999986544
No 236
>PRK10646 ADP-binding protein; Provisional
Probab=84.64 E-value=1.7 Score=43.95 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.-.|++.|+-|||||+-+|-+.+.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999988873
No 237
>PRK10436 hypothetical protein; Provisional
Probab=84.62 E-value=0.68 Score=55.08 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=27.6
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++.+.. ...=-|+|+|..|||||++...+|+++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 4555543 23557999999999999999999998754
No 238
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=84.58 E-value=0.58 Score=57.23 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=26.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
++.|.+.|.|+||||||+..|.++..+.--
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 467999999999999999999998877543
No 239
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=84.56 E-value=0.92 Score=49.07 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 239 AITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 239 avA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-+.+++|..|... ..+.+-.+.|++|+||||++|.+-+.|..
T Consensus 16 plt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 16 PLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred hHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 4578888877543 45788899999999999999988776653
No 240
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.43 E-value=0.76 Score=48.80 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|++|||||+..|.|.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988643
No 241
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.41 E-value=0.77 Score=48.34 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999987543
No 242
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=84.39 E-value=0.75 Score=49.60 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999988644
No 243
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=84.39 E-value=0.76 Score=48.62 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999988643
No 244
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=84.33 E-value=0.72 Score=49.44 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 457889999999999999999886543
No 245
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=84.31 E-value=0.74 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999998887764
No 246
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=84.29 E-value=0.86 Score=50.79 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=24.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|+|.|++|+|||+.++.+-+++...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 599999999999999999999988754
No 247
>PRK02496 adk adenylate kinase; Provisional
Probab=84.28 E-value=0.82 Score=47.08 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|.|.+|||||+.++.+.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998776
No 248
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=84.21 E-value=0.78 Score=48.30 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998886544
No 249
>PLN02796 D-glycerate 3-kinase
Probab=84.18 E-value=0.77 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
=-|-|+|.||||||+.++.|...|.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3488999999999999998877764
No 250
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=84.18 E-value=2 Score=52.18 Aligned_cols=100 Identities=31% Similarity=0.396 Sum_probs=58.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC--Cc--h--hhhhh---hhHHHHhhcC------cccCCCCCCCCcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GI--E--YEILK---TNPILEAFGN------AKTSRNDNSSRFG 316 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~--~i--~--~~il~---snpiLEAFGN------AkT~~N~NSSRFG 316 (955)
..||.+||-||.|||||+ .|=|||...+-.. .| . .+|.+ |.-|=|..|+ .-|+|=++++ +
T Consensus 64 e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~t--s 138 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDST--S 138 (674)
T ss_pred HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccC--C
Confidence 459999999999999997 5778998754221 11 1 23332 4566777776 1222222211 1
Q ss_pred cEEEEEEcCCCCeeceeeeeeecCCeeeee-cCCCCcchHH
Q 002188 317 KLIEIHFSETGKISGANIQTFLLEKSRVVQ-CAEGERAYHI 356 (955)
Q Consensus 317 K~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~-q~~gERNfHI 356 (955)
+=++|-|=.+|-+--=.+..=+|+|-=|+- -...||+-|.
T Consensus 139 ~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~T 179 (674)
T KOG0922|consen 139 KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHT 179 (674)
T ss_pred CceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHH
Confidence 134444444554444444455688855554 4557998884
No 251
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.17 E-value=0.76 Score=48.22 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999886543
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=84.16 E-value=0.8 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|++|||||+..+.++..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578899999999999999999876553
No 253
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=84.15 E-value=0.78 Score=49.24 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|...+.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999999876553
No 254
>PRK00023 cmk cytidylate kinase; Provisional
Probab=84.12 E-value=0.83 Score=49.13 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=23.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 255
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.09 E-value=0.82 Score=46.76 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=22.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888875443
No 256
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.09 E-value=1.7 Score=48.77 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHHHc------CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 235 PHVYAITDTAIREMIRD------EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~------~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
-|++.-|..|..--... .-|--|++.|+.|.|||..||.+-|.|.-.
T Consensus 152 ~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 152 ERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 56667666665433221 247889999999999999999999999653
No 257
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=84.06 E-value=0.76 Score=47.10 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~ 276 (955)
.--.|.|+|.||+|||+..|.+-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 356799999999999998877643
No 258
>PRK10908 cell division protein FtsE; Provisional
Probab=84.05 E-value=0.8 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999986443
No 259
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=84.01 E-value=0.78 Score=49.65 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999999886444
No 260
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.00 E-value=0.81 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.|+||||||+..+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999886543
No 261
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=83.99 E-value=0.71 Score=48.68 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=30.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhh-----hHHHHhhcCc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKT-----NPILEAFGNA 304 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~~~~~i~~~il~s-----npiLEAFGNA 304 (955)
.|.|+|.+|||||+.++++..+=+.+=....+...++.. ..|.+.||..
T Consensus 3 ~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~ 56 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDD 56 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 589999999999999998875311111112333344432 3466777763
No 262
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=83.95 E-value=2 Score=50.60 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHH
Q 002188 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
++.+.-+|...+..-.+.|-+.|.|.||+|||+..+.++.
T Consensus 145 ~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 145 PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred cccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhcc
Confidence 4556667777777778899999999999999999888875
No 263
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=83.94 E-value=0.78 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999999988654
No 264
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=83.89 E-value=0.8 Score=48.50 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 567899999999999999999886443
No 265
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=83.84 E-value=0.89 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.++|.|.||||||...+.++.-|+..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 69999999999999999998888774
No 266
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.83 E-value=1.4 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+|++.|++|+|||+.++.+-+.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999986654
No 267
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.82 E-value=1.1 Score=53.91 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..|+...-..+.. ..+-.++++++|++|+|||+.++.+.+.|...
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3565444333332 24557889999999999999999999988653
No 268
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=83.81 E-value=0.74 Score=48.28 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=26.5
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+..+..++|+|.|..|+|||...+.+++.+
T Consensus 12 ~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 12 KELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344555668999999999999999999998877
No 269
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=83.81 E-value=1 Score=53.26 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHc-----CceeEEEEcCCCCCChhHHHH
Q 002188 236 HVYAITDTAIREMIRD-----EVNQSIIISGESGAGKTETAK 272 (955)
Q Consensus 236 HiyavA~~Ay~~m~~~-----~~~QsIiisGESGAGKTe~~K 272 (955)
||=.-.+.-+...+.+ ...+.|.|.|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4444555566666654 678999999999999999998
No 270
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.75 E-value=1 Score=47.49 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
++.|++.|.+|+|||+|+-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999988887777654
No 271
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.72 E-value=1.5 Score=47.37 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
....++|.|++|+|||+.+..++.-++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999997665555554
No 272
>PRK13695 putative NTPase; Provisional
Probab=83.67 E-value=0.94 Score=46.32 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 002188 257 IIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~ 280 (955)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888764
No 273
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=83.66 E-value=0.84 Score=48.69 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999999887654
No 274
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=83.64 E-value=0.82 Score=48.82 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999998876553
No 275
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=83.63 E-value=0.98 Score=47.86 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=34.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFG 302 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~~~~~i~~~il~snpiLEAFG 302 (955)
+=.|+|+|.=|+|||+.++.+-++|-+ .+..++..=||+|+-|=
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~-----~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF-----KVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC-----ceeeecccCChHHHHHH
Confidence 457999999999999999999998853 33445556677777664
No 276
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=83.63 E-value=0.85 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999886443
No 277
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=83.61 E-value=0.77 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4568999999999999999998854
No 278
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=83.57 E-value=0.96 Score=45.90 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.|+|+|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 279
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.55 E-value=0.85 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (955)
+..+.+.|.|+||||||+..+-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 567899999999999999974333
No 280
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.52 E-value=1.3 Score=53.72 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 234 SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+|+-.. ..++... +-++++|++|++|.|||+.++.+.+.|-.
T Consensus 21 q~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4666553 4444443 55788999999999999999999998854
No 281
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=83.52 E-value=1.4 Score=48.52 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
|++=.+-+++.+.+.. +..|++.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5555566666655543 578999999999999999987653
No 282
>PF13173 AAA_14: AAA domain
Probab=83.51 E-value=1 Score=43.66 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
++.++|.|..|+|||+.++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 283
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=83.50 E-value=0.88 Score=47.94 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999887654
No 284
>PLN02348 phosphoribulokinase
Probab=83.49 E-value=1.4 Score=51.12 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++.--|-|+|-||||||+.++.|.+.|-.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44556669999999999999999888753
No 285
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=83.47 E-value=0.88 Score=48.64 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886544
No 286
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=83.44 E-value=1.3 Score=54.67 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.5
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.....+++|+|.||+|+|||+.++.+.+....
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445567899999999999999999999877644
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.42 E-value=1.2 Score=46.25 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=25.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
...+.++|.|.+|.|||..+..+.+.++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 457899999999999999999999988873
No 288
>PRK05973 replicative DNA helicase; Provisional
Probab=83.41 E-value=1.3 Score=48.00 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=26.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+.+.++|.|++|+|||..+-.++...+..+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 4578999999999999999998888776543
No 289
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.38 E-value=0.85 Score=50.21 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999886544
No 290
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.25 E-value=0.92 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (955)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345778999999999999999874
No 291
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=83.25 E-value=0.88 Score=49.74 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999987654
No 292
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=83.24 E-value=0.89 Score=48.74 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999886543
No 293
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.23 E-value=0.92 Score=47.28 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.++.-+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999998886644
No 294
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=83.22 E-value=0.86 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.+...+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999987643
No 295
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.16 E-value=1.1 Score=50.59 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.||-.+.. ....+|+|+|+.|||||+..+.+|.++-.
T Consensus 131 ~~~ayL~~~i-e~~~siii~G~t~sGKTt~lnall~~Ip~ 169 (312)
T COG0630 131 EQAAYLWLAI-EARKSIIICGGTASGKTTLLNALLDFIPP 169 (312)
T ss_pred HHHHHHHHHH-HcCCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4455533332 33678999999999999999999988753
No 296
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=83.13 E-value=0.96 Score=48.27 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 5679999999999999999999876653
No 297
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=83.07 E-value=0.88 Score=48.73 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|...+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998887554
No 298
>PRK06620 hypothetical protein; Validated
Probab=83.07 E-value=1.6 Score=46.55 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCChhHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~i 274 (955)
.+++|.|++|+|||+.++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999888864
No 299
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=82.97 E-value=0.9 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
...++|+|+||+||||++--+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999888875
No 300
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.94 E-value=0.93 Score=47.72 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|+..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998887544
No 301
>PRK14530 adenylate kinase; Provisional
Probab=82.93 E-value=0.98 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999988773
No 302
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.92 E-value=0.86 Score=50.70 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999999997654
No 303
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=82.92 E-value=1.5 Score=47.17 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...++|+|++|||||.-+.+++.-.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5788999999999999999988755444
No 304
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.91 E-value=0.91 Score=47.03 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.....+.|.|+||||||+..|.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999999876654
No 305
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=82.87 E-value=1.1 Score=47.12 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=22.4
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
....+..|++.|.+|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346799999999999999999998877654
No 306
>PF13479 AAA_24: AAA domain
Probab=82.87 E-value=0.82 Score=48.64 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i 274 (955)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999877655
No 307
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.86 E-value=0.95 Score=53.64 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
....++.+... ..==|+++|..|||||+|..-++++|-.-
T Consensus 246 ~~~~~~~~~~~-p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 246 QLARLLRLLNR-PQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHHHHhC-CCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 34455566533 23456889999999999999999998663
No 308
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.84 E-value=0.94 Score=49.35 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|++|||||+..|.|...+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999886554
No 309
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=82.83 E-value=1.1 Score=48.09 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
.|.|.|.||||||+.+|.+.+.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987663
No 310
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.82 E-value=0.95 Score=48.58 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999886544
No 311
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.80 E-value=0.97 Score=47.46 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....+.|.|++|||||+..|.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999887654
No 312
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=82.80 E-value=1.1 Score=45.67 Aligned_cols=53 Identities=30% Similarity=0.405 Sum_probs=40.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceee
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i 334 (955)
=.|.|||..|+||||.++.+...|...+ =.-|-|+.-.--..|+-+|-+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g------------------------------~kvgGf~t~EVR~gGkR~GF~I 55 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG------------------------------YKVGGFITPEVREGGKRIGFKI 55 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC------------------------------ceeeeEEeeeeecCCeEeeeEE
Confidence 3599999999999999999999887642 1334555555556788888887
Q ss_pred eee
Q 002188 335 QTF 337 (955)
Q Consensus 335 ~~y 337 (955)
.+-
T Consensus 56 vdl 58 (179)
T COG1618 56 VDL 58 (179)
T ss_pred EEc
Confidence 763
No 313
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.78 E-value=1.1 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 240 vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++.....+.+.+.-++++|.|.+|||||+..+.+...+..
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 35555556665555589999999999999999998876654
No 314
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.78 E-value=0.98 Score=47.29 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999886543
No 315
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=82.78 E-value=1.5 Score=48.92 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..+.++++|++|+|||..++.+.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999887655
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=82.77 E-value=2.2 Score=48.64 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=28.2
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+..-.|-|+|.+|||||+.+..+..+|...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5778999999999999999999999999764
No 317
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.76 E-value=0.94 Score=49.07 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999999886543
No 318
>PRK13947 shikimate kinase; Provisional
Probab=82.73 E-value=1.1 Score=45.38 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999987765
No 319
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=82.73 E-value=0.94 Score=48.80 Aligned_cols=27 Identities=41% Similarity=0.459 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|+-.+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999986533
No 320
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.70 E-value=0.89 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.=-|+|+|+.|||||++...+|+++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 45688999999999999999998884
No 321
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=82.68 E-value=1.3 Score=56.28 Aligned_cols=50 Identities=24% Similarity=0.186 Sum_probs=32.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFG 302 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~~i~~~il~snpiLEAFG 302 (955)
.|-.++|.|.||||||.+++.++..+...+...-+-+.=-...++.+++|
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g 478 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG 478 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence 35579999999999999999998776655432111111112334567776
No 322
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.59 E-value=1.5 Score=53.90 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=38.0
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 224 IEAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 224 ~~~Y~~~~~~----~PHiyavA~~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++|+-+... .+|+-.+ ++++...+ -.+++|++|+.|.|||++++.+.+.|-.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3556544432 5777443 44444444 4899999999999999999999999864
No 323
>PRK04328 hypothetical protein; Provisional
Probab=82.58 E-value=1.6 Score=47.72 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=25.6
Q ss_pred HHHHHHcC--ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 245 IREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 245 y~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...|+..+ ...+|+|+|++|+|||..+-+++..-+
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~ 48 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL 48 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34455443 578999999999999998877665533
No 324
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.54 E-value=1.5 Score=53.80 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..|+-..-..++. ..+..+++|++|++|.|||+.++.+.++|...
T Consensus 21 q~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 21 QEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4665544333332 24567999999999999999999999999643
No 325
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=82.54 E-value=1.6 Score=49.28 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..+.+.-+.....-+....|+++|.+|||||+..+.+-+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334444433333344668899999999999999999987765
No 326
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=82.53 E-value=1 Score=48.19 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|.+|||||+..+.|+-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999886543
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=82.51 E-value=1.7 Score=46.94 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..+++|+|++|+|||+.+-+++..-+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~ 47 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ 47 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999987666544333
No 328
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=82.51 E-value=1.2 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.-|.|+|..|||||+..+.+++.+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 35899999999999999999987754
No 329
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=82.49 E-value=1 Score=46.24 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999999887544
No 330
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=82.48 E-value=0.97 Score=49.57 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|+..+.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568899999999999999999876553
No 331
>PRK05439 pantothenate kinase; Provisional
Probab=82.48 E-value=1.9 Score=48.61 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.7
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+.+--|-|+|-+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556789999999999999999988876543
No 332
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=82.48 E-value=0.96 Score=48.07 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998886543
No 333
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.42 E-value=0.99 Score=48.93 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 457889999999999999999987654
No 334
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.41 E-value=0.99 Score=49.58 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999997643
No 335
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=82.40 E-value=1.2 Score=46.02 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..-|+|.|-.|||||+-++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356999999999999999999888755
No 336
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=82.38 E-value=0.98 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999986543
No 337
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=82.36 E-value=0.91 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i 274 (955)
+.-.+.|.|+||||||+...++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3557899999999999865544
No 338
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.30 E-value=1 Score=46.91 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999999999999988863
No 339
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=82.28 E-value=1.1 Score=46.22 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|.||||||+..+.|...+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888886544
No 340
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=82.26 E-value=0.88 Score=48.22 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~y 277 (955)
-|.|+|.+|||||+.++++..+
T Consensus 7 ~igitG~igsGKSt~~~~l~~~ 28 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAEM 28 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999988764
No 341
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=82.26 E-value=1.5 Score=46.38 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHHHcC--ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 245 IREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 245 y~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
...|+..+ ....++|+|++|+|||+.+.+++..++..
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44555433 45779999999999999999998777643
No 342
>PRK09087 hypothetical protein; Validated
Probab=82.25 E-value=1.7 Score=46.81 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~ 276 (955)
.+..++|.|+||+|||+.+..+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999988886554
No 343
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=82.21 E-value=1.5 Score=46.07 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=23.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+.+.+.|+|++|||||..+.++....+..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~ 39 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ 39 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999998776665543
No 344
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=82.18 E-value=1 Score=47.13 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|+..+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467899999999999999999886544
No 345
>PRK04195 replication factor C large subunit; Provisional
Probab=82.17 E-value=1.3 Score=53.00 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....++|+|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 337899999999999999999998876
No 346
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=82.12 E-value=1.6 Score=50.07 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=26.4
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..-..|+|+|++|+|||+.++.+-+||-.
T Consensus 35 ~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 35 DPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 444578999999999999999999999875
No 347
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=82.12 E-value=1.1 Score=47.57 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999887543
No 348
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=82.12 E-value=1 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...+.+.|.|+||||||+..|.|.-
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999888754
No 349
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=82.07 E-value=0.61 Score=45.90 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=20.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
..+..|+|+||+|+||+..++.|-.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~ 43 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHR 43 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHH
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHh
Confidence 5578899999999999988776544
No 350
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.01 E-value=1.9 Score=50.41 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=31.1
Q ss_pred HHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..++++.. +-++++|++|+.|.|||+.++.+-++|-.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46666665 55789999999999999999999988865
No 351
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.00 E-value=1 Score=47.92 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999999886544
No 352
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=81.98 E-value=0.86 Score=55.52 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+..+.|.|.|+||||||+..|.++..+..-+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~ 386 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 5689999999999999999999988775443
No 353
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=81.95 E-value=1 Score=47.53 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999987654
No 354
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=81.92 E-value=1.1 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999987654
No 355
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=81.92 E-value=1.1 Score=46.28 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888876544
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=81.88 E-value=1.8 Score=46.11 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=23.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...++|.|++|+|||+.+..++...+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~ 46 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR 46 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5789999999999999999887765544
No 357
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=81.85 E-value=1.1 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~i 274 (955)
.+-.-++|.|.||||||+..+.|
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34577999999999999876654
No 358
>PRK07429 phosphoribulokinase; Provisional
Probab=81.83 E-value=1.1 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 44568899999999999999887655
No 359
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=81.83 E-value=1 Score=48.81 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.+...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999888876544
No 360
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.81 E-value=1.3 Score=41.62 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.++|.|+.|+|||+.+-.++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37999999999999999999888765
No 361
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.79 E-value=2.3 Score=47.21 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=27.9
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHH
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
|-+=.+.-...-.++-. .++.+++.|++|+|||...+.+++
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhc
Confidence 44444444555455444 388999999999999998877654
No 362
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=81.72 E-value=1.1 Score=48.19 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999998876553
No 363
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=81.68 E-value=1.1 Score=49.31 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999886544
No 364
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=81.67 E-value=1.1 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999887544
No 365
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=81.64 E-value=1.4 Score=47.06 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...++|+|++|+|||..+.+++..-+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~ 45 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK 45 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh
Confidence 5789999999999999988776644333
No 366
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.61 E-value=1.1 Score=48.39 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999886543
No 367
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=81.60 E-value=1.1 Score=48.67 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999998886543
No 368
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=81.59 E-value=1 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
...++|+|++|||||+..|.|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999994
No 369
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=81.58 E-value=0.8 Score=56.18 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+..+.|.|.|+||||||+..|.++..+.-.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 567899999999999999999998776543
No 370
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=81.56 E-value=1.1 Score=47.43 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.--+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467999999999999999998876443
No 371
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=81.53 E-value=1.2 Score=46.52 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 372
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.52 E-value=0.84 Score=50.04 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.3
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
.++-.-...+.+.|.|+||||||+..|.|+..+..-+|
T Consensus 18 ~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 34432356889999999999999999999888764433
No 373
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.51 E-value=1.1 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457889999999999999998886544
No 374
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=81.45 E-value=2.3 Score=53.69 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=28.7
Q ss_pred HHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 244 AIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 244 Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+++..+. ...+.++.|+|.+|.|||.+++.+++-|...
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 3444667799999999999999999998653
No 375
>PRK06526 transposase; Provisional
Probab=81.45 E-value=1.3 Score=48.60 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..+.++|.|.+|+|||..+..|...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 456799999999999999999988877643
No 376
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=81.42 E-value=1.1 Score=48.95 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999987654
No 377
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.40 E-value=1.1 Score=48.20 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999998888643
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=81.39 E-value=1.2 Score=45.51 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457889999999999999999887654
No 379
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=81.39 E-value=1.4 Score=46.36 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=31.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH--hccCCCCchhhhhhh-----hHHHHhhcCc
Q 002188 257 IIISGESGAGKTETAKIAMQYLA--ALGGGSGIEYEILKT-----NPILEAFGNA 304 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~--~~~~~~~i~~~il~s-----npiLEAFGNA 304 (955)
|.|+|..|||||+.++++-+.+. .++ ...+...++.. ..+.+.||..
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~-~D~~~~~~~~~~~~~~~~l~~~fg~~ 57 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILD-ADIYAREALAPGSPILKAILQRYGNK 57 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEee-CcHHHHHHHhcCchHHHHHHHHhCHH
Confidence 88999999999999999877531 121 12344444431 3567788873
No 380
>PRK01184 hypothetical protein; Provisional
Probab=81.38 E-value=1.1 Score=46.10 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=16.1
Q ss_pred EEEEcCCCCCChhHHHHH
Q 002188 256 SIIISGESGAGKTETAKI 273 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~ 273 (955)
-|+|+|.+|||||+.+++
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999999884
No 381
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=81.37 E-value=1.1 Score=48.35 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999887544
No 382
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=81.35 E-value=1.2 Score=48.44 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999887554
No 383
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.34 E-value=1.2 Score=54.06 Aligned_cols=120 Identities=27% Similarity=0.332 Sum_probs=66.9
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhccCCC----Cch--hhhh---hhhHHHHhhcCcccCCCCCCCCc----cc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIE--YEIL---KTNPILEAFGNAKTSRNDNSSRF----GK 317 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~~----~i~--~~il---~snpiLEAFGNAkT~~N~NSSRF----GK 317 (955)
-++||.|||.||.|||||+ .+-|||..-|-+. ++. .++. -|-.|-|-.|----..=--|=|| +.
T Consensus 368 ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred HhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 3679999999999999997 4668887654221 111 1221 12333343321100000112233 22
Q ss_pred EEEEEEcCCCCeeceeeeeeecCCeeeeec-CCCCc--chHHHHHHHcCCCHHhHhhcCC
Q 002188 318 LIEIHFSETGKISGANIQTFLLEKSRVVQC-AEGER--AYHIFYQLCVGAPPALREKLNL 374 (955)
Q Consensus 318 ~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q-~~gER--NfHIFYqLl~G~~~~~~~~l~L 374 (955)
-+.|-|=.+|.+---.+..=+|+|-.||-- ...|| |-.|..-||.-+- ..|..|.|
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKl 503 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKL 503 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceE
Confidence 245566667777777788888999777654 45677 4556666664321 23445554
No 384
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=81.34 E-value=1.1 Score=49.34 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=24.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4578899999999999999999987664
No 385
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=81.32 E-value=1.5 Score=48.06 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=23.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+...++|+|++|+|||..+-+++...+..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 57889999999999999888876665544
No 386
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=81.32 E-value=0.97 Score=55.19 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=25.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++.+.|.|.|+||||||+..|.++..+.-
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 56899999999999999999999887644
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=81.29 E-value=1.1 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.7
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~y 277 (955)
++|+|.+|||||+..+.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 789999999999999987764
No 388
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=81.28 E-value=1.2 Score=47.46 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|+..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887654
No 389
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=81.27 E-value=1.2 Score=46.77 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887544
No 390
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=81.20 E-value=1.2 Score=45.19 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887544
No 391
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=81.18 E-value=1.2 Score=46.51 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|...+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888886544
No 392
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.14 E-value=1.2 Score=48.51 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999987544
No 393
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=81.13 E-value=1.2 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999999887654
No 394
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.11 E-value=1.2 Score=45.32 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999888886544
No 395
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=81.11 E-value=1.2 Score=48.61 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998886554
No 396
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.07 E-value=3.6 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002188 894 HRAAVVIQRQIKSRVARQKLKN 915 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~ 915 (955)
.+||+.||++||+|++|++|+.
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443
No 397
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=81.04 E-value=1.2 Score=48.29 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45788999999999999999998754
No 398
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.99 E-value=1.2 Score=46.80 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|++|||||+..+.|.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4678999999999999999998866553
No 399
>PRK13946 shikimate kinase; Provisional
Probab=80.99 E-value=1.3 Score=45.97 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....|++.|-+|||||+..+.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998776
No 400
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=80.96 E-value=0.86 Score=55.83 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=25.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567999999999999999999999887
No 401
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=80.96 E-value=1.2 Score=47.76 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999988886443
No 402
>PRK00625 shikimate kinase; Provisional
Probab=80.92 E-value=1.3 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
-|++.|-.|||||+.+|.+-+.|-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999977763
No 403
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=80.89 E-value=1.9 Score=52.13 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=27.2
Q ss_pred HHHHHHHHcC-ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 243 TAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 243 ~Ay~~m~~~~-~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.... ..+-+|++|.+|+|||++.+.+.+-|.
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444333 356778899999999999999988773
No 404
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.87 E-value=1.2 Score=49.10 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988886544
No 405
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.86 E-value=1.2 Score=47.13 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 457889999999999999988886544
No 406
>PRK07952 DNA replication protein DnaC; Validated
Probab=80.83 E-value=1.9 Score=46.97 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=26.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+.++++|.+|+|||+.+..|..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998753
No 407
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=80.76 E-value=1.3 Score=47.18 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.++--+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999887543
No 408
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=80.73 E-value=1.2 Score=48.48 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999887544
No 409
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.73 E-value=1.2 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999999888654
No 410
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=80.67 E-value=1.5 Score=48.74 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|.|+|.||||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 488999999999999999999998865
No 411
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=80.60 E-value=0.9 Score=55.74 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..|.|.|.|+||||||+..|.++..+.-
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 56799999999999999999999876644
No 412
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=80.58 E-value=1.2 Score=49.84 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|+-.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999987654
No 413
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.55 E-value=1.4 Score=51.69 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=28.1
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhccCC
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALGGG 284 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~~~ 284 (955)
.-|.|-+.|+|||||++.++++++|.-.-+|+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 45999999999999999999999999776653
No 414
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=80.55 E-value=1.3 Score=44.12 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999988885543
No 415
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=80.52 E-value=1.2 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|+-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 457899999999999999999987654
No 416
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=80.49 E-value=1.3 Score=54.02 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=33.3
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
|-|.++-.++|.. +.++.-.|+|+|.||||||+.++.+.+.|..
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 5555655555533 2345669999999999999999999888865
No 417
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.48 E-value=0.75 Score=47.25 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-+..=|.||||||||+..+.|-..|+-
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccCC
Confidence 456778999999999987777655543
No 418
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.48 E-value=1.3 Score=48.41 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999987654
No 419
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=80.47 E-value=1.3 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|.|-+|||||+.++.|-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987764
No 420
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.45 E-value=1.2 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.|+||||||+..|.|...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997544
No 421
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.43 E-value=1.3 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...+.+.|.|+||||||+..|.|..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999988854
No 422
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.43 E-value=2 Score=51.79 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=38.6
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHH-HcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 224 IEAYKSKSIE----SPHVYAITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 224 ~~~Y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++|+-+... .+||-. +.+++. ..+-+++++++|..|.|||++++.+.+.|-.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4566544432 466644 444554 3466899999999999999999999998854
No 423
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.40 E-value=1.2 Score=49.01 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 457889999999999999988876443
No 424
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=80.37 E-value=1.2 Score=48.92 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 457889999999999999999887543
No 425
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=80.37 E-value=1.3 Score=48.31 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887554
No 426
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=80.35 E-value=2.1 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
-+|++.|++|+|||+.+|.+-+.|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 689999999999999999986554
No 427
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=80.32 E-value=1.3 Score=46.37 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
+..+.+.|.|+||||||+..|.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999988887644
No 428
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.31 E-value=1.3 Score=48.58 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 357899999999999999999885544
No 429
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=80.23 E-value=1.3 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..+.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999999988653
No 430
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=80.22 E-value=2.4 Score=43.41 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 236 HiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
|++.--..++..|--..+.--|+|.|.+|||||+..+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 1 FIFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred ChHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHh
Confidence 3343344566666556667779999999999999887653
No 431
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=80.21 E-value=1.3 Score=47.19 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999987644
No 432
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=80.19 E-value=2.8 Score=42.70 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.4
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..+-+|++|+.|++|+||++.++.+.+.|....
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 346689999999999999999999999886644
No 433
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=80.16 E-value=1.4 Score=46.38 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|++|||||+..|.|...+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4578999999999999999999876553
No 434
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=80.14 E-value=1.3 Score=47.05 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999999886544
No 435
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=80.12 E-value=1.3 Score=48.35 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999999886544
No 436
>PRK00279 adk adenylate kinase; Reviewed
Probab=80.09 E-value=1.4 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999977663
No 437
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=80.00 E-value=1.8 Score=43.35 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=23.3
Q ss_pred HHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 245 IREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
.+.+....+.-.|+|.|.+|||||+..+.+.
T Consensus 5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 5 LRKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 3444444556679999999999999887664
No 438
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=79.99 E-value=1.4 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988887654
No 439
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=79.98 E-value=1.3 Score=48.42 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998887543
No 440
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.95 E-value=1.4 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|...+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999887543
No 441
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=79.93 E-value=1.4 Score=48.49 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457999999999999999999886544
No 442
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=79.92 E-value=1 Score=56.62 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..|.|.|.|+||||||+..|.++..+.-
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4688999999999999999999886643
No 443
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=79.92 E-value=1.3 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|+..+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999997654
No 444
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=79.92 E-value=1.7 Score=55.20 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
.+-.++|.|.||||||+.++.++..+...++
T Consensus 433 ~~~n~~I~G~tGsGKS~~~~~l~~~~~~~~~ 463 (785)
T TIGR00929 433 VLGHTLIFGPTGSGKTTLLNFLLAQMQKYGG 463 (785)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhccCC
Confidence 3788999999999999999999877766543
No 445
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=79.88 E-value=1.3 Score=48.73 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887543
No 446
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=79.88 E-value=2.3 Score=48.33 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=32.1
Q ss_pred HHHHHHH--HcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 243 TAIREMI--RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 243 ~Ay~~m~--~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+|+++. ..+-+++++++|++|.|||+.++.+-+.|...
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4555555 35778999999999999999999999888653
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=79.88 E-value=0.99 Score=49.40 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+|...|.--++.|-++|.|++|+|||+.++.+.+.+..
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34444555678999999999999999998888776643
No 448
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=79.87 E-value=1.3 Score=48.63 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888886443
No 449
>PRK06921 hypothetical protein; Provisional
Probab=79.85 E-value=2.8 Score=46.26 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=25.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
....+++.|++|+|||..+..|.+.+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46899999999999999999988877653
No 450
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.76 E-value=1.4 Score=47.81 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999987544
No 451
>PRK13949 shikimate kinase; Provisional
Probab=79.70 E-value=1.5 Score=44.92 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
.|+|.|..|||||+.+|.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998877763
No 452
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=79.70 E-value=2.5 Score=48.19 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 243 TAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 243 ~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..|+.|... +-+++++++|++|.|||+.+..+-+.|...
T Consensus 10 ~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 10 SLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred HHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 566667654 458999999999999999999999988764
No 453
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=79.67 E-value=1.3 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999888643
No 454
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.63 E-value=1.5 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...+.+.|.|++|||||+..+.+..
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999998888753
No 455
>PRK05642 DNA replication initiation factor; Validated
Probab=79.61 E-value=3.2 Score=44.86 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
-.++|.|++|+|||+.+..+..++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999988887777543
No 456
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=79.61 E-value=1.4 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987655
No 457
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.60 E-value=1.4 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|...+
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457889999999999999999886443
No 458
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.57 E-value=1.3 Score=46.58 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.+.|.|+||||||+..|.+...+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999886544
No 459
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=79.55 E-value=1.4 Score=48.00 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 357889999999999999999987654
No 460
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.52 E-value=3 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 002188 865 KELRRGIVALQSFIRGEKIRKEYAL 889 (955)
Q Consensus 865 ~~~r~aav~IQs~~Rg~~aRr~~~~ 889 (955)
++..++|+.+|++|||+++|++.+.
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666665543
No 461
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.51 E-value=1.4 Score=50.03 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|...+.
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999999999999999999876543
No 462
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.48 E-value=2.1 Score=53.72 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.4
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+...++..+++|.|++|.|||+.++.+-+.+
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 567777778888899999999999999999998765
No 463
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.45 E-value=2.1 Score=49.44 Aligned_cols=41 Identities=34% Similarity=0.487 Sum_probs=33.8
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
.++...++...+-.|+|.|.+|.|||.++|++++-|-..+.
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 33666677777777999999999999999999999877543
No 464
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=79.40 E-value=1.9 Score=43.23 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
|.++|.+|||||+.++.+..++...+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g 27 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 78899999999999999998886654
No 465
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=79.37 E-value=1.4 Score=48.10 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999998886544
No 466
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.32 E-value=1.5 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999999999999887654
No 467
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.32 E-value=1.4 Score=47.63 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.|...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457889999999999999999887543
No 468
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.31 E-value=1.4 Score=48.41 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|...+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457889999999999999999887543
No 469
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=79.31 E-value=1.5 Score=47.25 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999998886543
No 470
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.25 E-value=1.5 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=19.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~i 274 (955)
+.--|+++.|.||||||+..|.+
T Consensus 35 ~aGECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHH
Confidence 34579999999999999988776
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=79.20 E-value=2.1 Score=44.77 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=24.0
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.|.+.++.... ..+|.|..|+|||++...++.++
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 34444443322 68999999999999999998888
No 472
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=79.17 E-value=1.5 Score=48.20 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999999999999997654
No 473
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.15 E-value=1.5 Score=48.54 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 357889999999999999999886543
No 474
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=79.13 E-value=2.4 Score=52.42 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=38.7
Q ss_pred HHHhhcCCC----CCCchhHHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 224 IEAYKSKSI----ESPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 224 ~~~Y~~~~~----~~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.++|+-+.. +.+|+.. +.++++.. +-.+++|++|+.|.|||+.++.+.+.|-..
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 355654432 2577665 44455444 567889999999999999999999988663
No 475
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=79.12 E-value=1.4 Score=48.63 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999886443
No 476
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=79.05 E-value=1.4 Score=47.94 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..+.+...+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999999886543
No 477
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.05 E-value=1.5 Score=47.48 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999999886654
No 478
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=79.03 E-value=1.9 Score=50.82 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+..|+++|.+|||||+++-.+..+|..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34678999999999999999999888864
No 479
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=78.96 E-value=3 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..++|+|.+|+|||..++.+.+++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 579999999999999999999988764
No 480
>PRK09183 transposase/IS protein; Provisional
Probab=78.96 E-value=1.8 Score=47.57 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=23.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+.+.++|.|++|+|||+.+..+...++.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999988666554
No 481
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=78.96 E-value=1.1 Score=56.23 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+..+.|.|.|+||||||+..|.++..+.-.
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 506 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356889999999999999999998876543
No 482
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=78.95 E-value=1.5 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999998886543
No 483
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.93 E-value=1.8 Score=50.07 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...|++.|.+|+|||+++..+..++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877653
No 484
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.86 E-value=1.5 Score=48.51 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457889999999999999998886543
No 485
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=78.86 E-value=3.1 Score=47.36 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=26.2
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+-++++++.|++|.|||+.++.+.+.|..
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999999988854
No 486
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=78.86 E-value=2.5 Score=44.65 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.3
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..+..+..=.|.++|-.|||||+..+.+++.+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555677889999999999999999998864
No 487
>PRK13975 thymidylate kinase; Provisional
Probab=78.83 E-value=1.7 Score=45.04 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
.-|+|.|-.|||||+.++.+-+.|
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987776
No 488
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=78.83 E-value=1.2 Score=54.43 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=26.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..+.+-|.|+||||||+..+++++|+-.
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45788889999999999999999999865
No 489
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=78.81 E-value=2.9 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|++.|.+|+|||+.++.+-+.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999987765
No 490
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=78.80 E-value=2.8 Score=51.39 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=38.2
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 224 IEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 224 ~~~Y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.++|+-.... .+|+- ..+.++.. .+-++++|++|+.|.|||+.++.+-+.|...
T Consensus 7 ~~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3556544322 46654 34444443 4668999999999999999999999998654
No 491
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=78.73 E-value=3.3 Score=49.00 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..+..|++.|..|+|||+++..+..+|...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 347889999999999999999999988764
No 492
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=78.72 E-value=1.5 Score=48.12 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|...+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 457889999999999999888886544
No 493
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=78.72 E-value=1.5 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|...
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999998888654
No 494
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.69 E-value=1.6 Score=47.46 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999998886543
No 495
>PRK14532 adenylate kinase; Provisional
Probab=78.69 E-value=1.5 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999997665
No 496
>PLN02200 adenylate kinase family protein
Probab=78.63 E-value=2 Score=46.56 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+--|+|.|.+|||||+.++.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998766
No 497
>PRK10865 protein disaggregation chaperone; Provisional
Probab=78.63 E-value=1.9 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.++++.|++|+|||+.++.|-+++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988875
No 498
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.60 E-value=2.4 Score=53.94 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=37.4
Q ss_pred HHhhcCCC----CCCchhHHHHHHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 225 EAYKSKSI----ESPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 225 ~~Y~~~~~----~~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++||-... +..||-.. +++++.. +-++++||+|+.|.|||++++.+.+.|-.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~----LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHA----LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHH----HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 45554432 24676543 4444444 56788899999999999999999999864
No 499
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=78.59 E-value=1.6 Score=47.91 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 457899999999999999999987543
No 500
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=78.59 E-value=4.8 Score=41.74 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHH-HHHHHHHHhc
Q 002188 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYLAAL 281 (955)
Q Consensus 236 HiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~-K~il~yL~~~ 281 (955)
.++..=..|+..+.. ++.+++.+++|+|||++. -.+++.+...
T Consensus 21 ~~~~~Q~~~~~~~~~---~~~~li~~~TG~GKT~~~~~~~l~~~~~~ 64 (203)
T cd00268 21 KPTPIQARAIPPLLS---GRDVIGQAQTGSGKTAAFLIPILEKLDPS 64 (203)
T ss_pred CCCHHHHHHHHHHhc---CCcEEEECCCCCcHHHHHHHHHHHHHHhh
Confidence 345556677877776 577999999999999983 4445555543
Done!