Query 002188
Match_columns 955
No_of_seqs 417 out of 2298
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 1E-215 5E-220 2006.0 73.0 824 116-942 7-864 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 4E-210 1E-214 1902.6 72.2 786 97-915 11-826 (837)
3 1w7j_A Myosin VA; motor protei 100.0 1E-206 4E-211 1863.8 66.4 752 117-871 8-794 (795)
4 4anj_A Unconventional myosin-V 100.0 1E-207 4E-212 1910.1 57.8 788 118-914 3-844 (1052)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-204 6E-209 1836.3 63.0 746 92-845 9-781 (783)
6 2ycu_A Non muscle myosin 2C, a 100.0 3E-201 1E-205 1863.4 65.6 789 113-906 4-824 (995)
7 1i84_S Smooth muscle myosin he 100.0 6E-201 2E-205 1909.6 68.2 774 112-888 26-838 (1184)
8 1w9i_A Myosin II heavy chain; 100.0 6E-201 2E-205 1800.3 61.0 716 118-849 31-766 (770)
9 2v26_A Myosin VI; calmodulin-b 100.0 2E-200 6E-205 1809.8 64.6 730 121-859 2-784 (784)
10 1g8x_A Myosin II heavy chain f 100.0 9E-198 3E-202 1829.7 75.1 754 113-883 28-810 (1010)
11 1lkx_A Myosin IE heavy chain; 100.0 1E-194 4E-199 1736.8 56.7 662 169-845 7-696 (697)
12 2dfs_A Myosin-5A; myosin-V, in 99.5 1.8E-14 6.1E-19 182.2 7.1 104 845-949 816-919 (1080)
13 2ix7_C Myosin-5A; contractIle 99.0 8.2E-10 2.8E-14 91.6 8.0 50 894-943 5-54 (58)
14 2ix7_C Myosin-5A; contractIle 98.8 2E-09 6.9E-14 89.2 4.9 45 847-891 7-51 (58)
15 1n2d_C IQ2 and IQ3 motifs from 98.8 5.8E-09 2E-13 83.0 6.8 46 867-913 2-47 (48)
16 1n2d_C IQ2 and IQ3 motifs from 98.8 1.4E-08 4.7E-13 80.8 7.0 43 894-936 3-47 (48)
17 1wdc_A Scallop myosin; calcium 97.8 3.3E-05 1.1E-09 65.1 6.1 49 866-914 4-52 (64)
18 2bl0_A Major plasmodial myosin 97.7 4E-05 1.4E-09 64.3 6.2 48 867-914 3-50 (63)
19 1kk8_A Myosin heavy chain, str 97.2 0.00044 1.5E-08 85.4 8.4 51 894-944 779-832 (837)
20 1wdc_A Scallop myosin; calcium 96.9 0.0017 5.7E-08 54.5 6.6 46 895-940 7-55 (64)
21 2bl0_A Major plasmodial myosin 96.9 0.0013 4.4E-08 55.0 5.6 46 895-940 5-53 (63)
22 1i84_S Smooth muscle myosin he 96.1 0.0069 2.4E-07 78.2 7.8 69 859-928 783-851 (1184)
23 1jbk_A CLPB protein; beta barr 95.2 0.0079 2.7E-07 59.1 2.8 33 248-280 37-69 (195)
24 3gn4_A Myosin-VI; unconvention 94.9 0.099 3.4E-06 50.7 9.3 67 852-927 12-78 (148)
25 2p65_A Hypothetical protein PF 94.9 0.028 9.6E-07 55.1 5.8 33 248-280 37-69 (187)
26 4eun_A Thermoresistant glucoki 94.4 0.02 7E-07 58.1 3.6 32 247-278 22-53 (200)
27 3uie_A Adenylyl-sulfate kinase 94.4 0.032 1.1E-06 56.6 4.9 30 250-279 21-50 (200)
28 3c8u_A Fructokinase; YP_612366 94.3 0.02 6.8E-07 58.6 3.0 30 251-280 19-48 (208)
29 1ex7_A Guanylate kinase; subst 94.1 0.023 7.9E-07 57.8 3.0 22 257-278 4-25 (186)
30 1kgd_A CASK, peripheral plasma 93.7 0.028 9.4E-07 56.2 2.8 25 254-278 5-29 (180)
31 1lvg_A Guanylate kinase, GMP k 93.4 0.035 1.2E-06 56.5 2.9 26 254-279 4-29 (198)
32 3a00_A Guanylate kinase, GMP k 93.4 0.028 9.7E-07 56.4 2.2 25 255-279 2-26 (186)
33 3bos_A Putative DNA replicatio 93.4 0.075 2.6E-06 54.4 5.5 38 244-281 42-79 (242)
34 3ec2_A DNA replication protein 93.3 0.046 1.6E-06 54.2 3.7 29 252-280 36-64 (180)
35 1zp6_A Hypothetical protein AT 93.3 0.038 1.3E-06 55.1 3.0 29 248-276 3-31 (191)
36 1qhx_A CPT, protein (chloramph 93.3 0.037 1.3E-06 54.5 2.8 25 254-278 3-27 (178)
37 2eyu_A Twitching motility prot 93.2 0.062 2.1E-06 57.4 4.6 37 244-281 16-52 (261)
38 2kxw_B Sodium channel protein 93.0 0.053 1.8E-06 37.4 2.4 18 894-911 6-23 (27)
39 2w58_A DNAI, primosome compone 93.0 0.067 2.3E-06 53.9 4.3 26 255-280 55-80 (202)
40 2l53_B CAM, voltage-gated sodi 93.0 0.078 2.7E-06 37.8 3.2 19 894-912 6-24 (31)
41 3tr0_A Guanylate kinase, GMP k 92.7 0.051 1.8E-06 54.7 3.0 26 253-278 6-31 (205)
42 3tau_A Guanylate kinase, GMP k 92.7 0.044 1.5E-06 56.1 2.5 27 252-278 6-32 (208)
43 1zuh_A Shikimate kinase; alpha 92.7 0.063 2.2E-06 52.5 3.5 27 253-279 6-32 (168)
44 2qor_A Guanylate kinase; phosp 92.6 0.044 1.5E-06 55.7 2.4 27 252-278 10-36 (204)
45 3t61_A Gluconokinase; PSI-biol 92.5 0.062 2.1E-06 54.3 3.3 25 254-278 18-42 (202)
46 3asz_A Uridine kinase; cytidin 92.5 0.066 2.3E-06 54.4 3.5 29 251-279 3-31 (211)
47 3kb2_A SPBC2 prophage-derived 92.5 0.065 2.2E-06 52.1 3.3 24 256-279 3-26 (173)
48 3vaa_A Shikimate kinase, SK; s 92.4 0.07 2.4E-06 54.0 3.6 26 253-278 24-49 (199)
49 1znw_A Guanylate kinase, GMP k 92.3 0.06 2.1E-06 54.9 2.9 27 252-278 18-44 (207)
50 1knq_A Gluconate kinase; ALFA/ 92.3 0.087 3E-06 51.8 4.0 26 253-278 7-32 (175)
51 1m7g_A Adenylylsulfate kinase; 92.3 0.11 3.8E-06 53.0 4.9 31 249-279 20-50 (211)
52 2j41_A Guanylate kinase; GMP, 92.1 0.057 2E-06 54.4 2.4 26 253-278 5-30 (207)
53 1s96_A Guanylate kinase, GMP k 92.1 0.065 2.2E-06 55.7 2.9 28 252-279 14-41 (219)
54 1kht_A Adenylate kinase; phosp 92.1 0.077 2.6E-06 52.5 3.3 26 254-279 3-28 (192)
55 2pez_A Bifunctional 3'-phospho 91.9 0.099 3.4E-06 51.7 3.9 28 253-280 4-31 (179)
56 1odf_A YGR205W, hypothetical 3 91.9 0.15 5E-06 55.4 5.5 30 251-280 28-57 (290)
57 1rz3_A Hypothetical protein rb 91.9 0.11 3.6E-06 52.8 4.1 31 252-282 20-50 (201)
58 3iij_A Coilin-interacting nucl 91.8 0.083 2.8E-06 52.3 3.2 26 253-278 10-35 (180)
59 1np6_A Molybdopterin-guanine d 91.8 0.098 3.4E-06 52.5 3.7 28 255-282 7-34 (174)
60 2kjq_A DNAA-related protein; s 91.7 0.09 3.1E-06 51.1 3.3 28 253-280 35-62 (149)
61 2rhm_A Putative kinase; P-loop 91.7 0.1 3.5E-06 51.9 3.7 26 253-278 4-29 (193)
62 3ney_A 55 kDa erythrocyte memb 91.7 0.093 3.2E-06 53.8 3.4 27 253-279 18-44 (197)
63 2f1r_A Molybdopterin-guanine d 91.6 0.049 1.7E-06 54.5 1.3 27 255-281 3-29 (171)
64 1htw_A HI0065; nucleotide-bind 91.6 0.11 3.7E-06 51.2 3.8 27 252-278 31-57 (158)
65 2chg_A Replication factor C sm 91.6 0.15 5.2E-06 51.0 4.9 37 244-280 28-64 (226)
66 1p9r_A General secretion pathw 91.6 0.14 4.8E-06 58.5 5.1 37 243-280 157-193 (418)
67 3jvv_A Twitching mobility prot 91.5 0.15 5E-06 57.1 5.1 37 244-281 114-150 (356)
68 1ye8_A Protein THEP1, hypothet 91.5 0.1 3.5E-06 52.4 3.5 23 256-278 2-24 (178)
69 1z6g_A Guanylate kinase; struc 91.5 0.07 2.4E-06 55.2 2.3 27 252-278 21-47 (218)
70 3tqf_A HPR(Ser) kinase; transf 91.5 0.093 3.2E-06 52.8 3.1 23 254-276 16-38 (181)
71 1njg_A DNA polymerase III subu 91.4 0.2 7E-06 50.6 5.6 30 251-280 42-71 (250)
72 1nks_A Adenylate kinase; therm 91.2 0.096 3.3E-06 51.8 2.9 25 256-280 3-27 (194)
73 1gvn_B Zeta; postsegregational 91.2 0.19 6.6E-06 54.3 5.5 27 252-278 31-57 (287)
74 2bdt_A BH3686; alpha-beta prot 91.1 0.12 4.2E-06 51.5 3.6 23 254-276 2-24 (189)
75 2bbw_A Adenylate kinase 4, AK4 91.1 0.12 4E-06 54.2 3.6 26 253-278 26-51 (246)
76 1xjc_A MOBB protein homolog; s 91.0 0.15 5E-06 51.1 3.9 28 255-282 5-32 (169)
77 1l8q_A Chromosomal replication 91.0 0.17 5.7E-06 55.2 4.8 45 235-281 18-64 (324)
78 1kag_A SKI, shikimate kinase I 90.9 0.1 3.5E-06 51.0 2.8 25 254-278 4-28 (173)
79 3trf_A Shikimate kinase, SK; a 90.8 0.14 4.6E-06 50.8 3.6 25 254-278 5-29 (185)
80 3lw7_A Adenylate kinase relate 90.8 0.1 3.5E-06 50.5 2.6 22 256-278 3-24 (179)
81 3e70_C DPA, signal recognition 90.8 0.17 5.8E-06 55.9 4.7 33 251-283 126-158 (328)
82 1sq5_A Pantothenate kinase; P- 90.7 0.2 6.8E-06 54.6 5.1 28 252-279 78-105 (308)
83 1gtv_A TMK, thymidylate kinase 90.7 0.063 2.1E-06 54.5 0.9 25 256-280 2-26 (214)
84 3aez_A Pantothenate kinase; tr 90.7 0.15 5E-06 56.0 4.0 30 251-280 87-116 (312)
85 3cm0_A Adenylate kinase; ATP-b 90.7 0.16 5.5E-06 50.2 4.0 26 253-278 3-28 (186)
86 4gp7_A Metallophosphoesterase; 90.6 0.14 4.9E-06 50.6 3.6 21 253-273 8-28 (171)
87 1e6c_A Shikimate kinase; phosp 90.5 0.14 4.9E-06 49.9 3.4 23 256-278 4-26 (173)
88 2ewv_A Twitching motility prot 90.5 0.15 5.3E-06 57.2 4.0 31 251-281 133-163 (372)
89 3cr8_A Sulfate adenylyltranfer 90.5 0.26 8.9E-06 58.3 6.1 31 252-282 367-397 (552)
90 2jaq_A Deoxyguanosine kinase; 90.4 0.14 4.8E-06 51.2 3.3 24 256-279 2-25 (205)
91 1cke_A CK, MSSA, protein (cyti 90.4 0.14 4.9E-06 52.3 3.5 25 254-278 5-29 (227)
92 2pt5_A Shikimate kinase, SK; a 90.4 0.15 5E-06 49.6 3.3 23 256-278 2-24 (168)
93 1d2n_A N-ethylmaleimide-sensit 90.3 0.29 9.9E-06 51.8 5.8 28 251-278 61-88 (272)
94 2yvu_A Probable adenylyl-sulfa 90.3 0.18 6.2E-06 50.1 4.0 29 253-281 12-40 (186)
95 2z0h_A DTMP kinase, thymidylat 90.3 0.17 5.7E-06 50.4 3.7 25 257-281 3-27 (197)
96 3b9q_A Chloroplast SRP recepto 90.1 0.22 7.4E-06 54.4 4.6 31 252-282 98-128 (302)
97 4anj_A Unconventional myosin-V 90.0 0.34 1.2E-05 61.2 6.9 19 451-469 319-337 (1052)
98 2iyv_A Shikimate kinase, SK; t 89.9 0.17 5.7E-06 50.1 3.4 23 256-278 4-26 (184)
99 1via_A Shikimate kinase; struc 89.8 0.17 5.9E-06 49.8 3.3 23 256-278 6-28 (175)
100 1rj9_A FTSY, signal recognitio 89.8 0.2 6.9E-06 54.7 4.2 30 253-282 101-130 (304)
101 2jeo_A Uridine-cytidine kinase 89.7 0.2 6.9E-06 52.4 4.0 27 252-278 23-49 (245)
102 1ly1_A Polynucleotide kinase; 89.7 0.18 6.3E-06 49.2 3.5 23 254-276 2-24 (181)
103 1fnn_A CDC6P, cell division co 89.7 0.31 1.1E-05 53.8 5.6 37 243-279 31-69 (389)
104 1qf9_A UMP/CMP kinase, protein 89.6 0.17 5.6E-06 50.1 3.0 25 254-278 6-30 (194)
105 1svm_A Large T antigen; AAA+ f 89.5 0.33 1.1E-05 54.6 5.8 45 234-278 148-193 (377)
106 3n70_A Transport activator; si 89.5 0.14 4.9E-06 49.1 2.4 25 252-276 22-46 (145)
107 3lnc_A Guanylate kinase, GMP k 89.5 0.11 3.8E-06 53.8 1.7 26 253-278 26-52 (231)
108 2vp4_A Deoxynucleoside kinase; 89.5 0.11 3.7E-06 54.0 1.6 26 252-277 18-43 (230)
109 2qby_B CDC6 homolog 3, cell di 89.4 0.29 1E-05 54.0 5.2 38 243-280 34-71 (384)
110 3fb4_A Adenylate kinase; psych 89.4 0.19 6.5E-06 51.1 3.4 22 257-278 3-24 (216)
111 4e22_A Cytidylate kinase; P-lo 89.3 0.18 6.1E-06 53.3 3.1 28 252-279 25-52 (252)
112 1ofh_A ATP-dependent HSL prote 89.3 0.27 9.4E-06 52.5 4.7 27 252-278 48-74 (310)
113 2pbr_A DTMP kinase, thymidylat 89.2 0.2 6.9E-06 49.6 3.3 25 256-280 2-26 (195)
114 3ake_A Cytidylate kinase; CMP 89.2 0.2 6.9E-06 50.3 3.4 23 256-278 4-26 (208)
115 2plr_A DTMP kinase, probable t 89.2 0.2 6.9E-06 50.4 3.3 26 254-279 4-29 (213)
116 3tlx_A Adenylate kinase 2; str 89.1 0.47 1.6E-05 49.7 6.2 28 251-278 26-53 (243)
117 2v9p_A Replication protein E1; 89.0 0.22 7.4E-06 54.5 3.6 36 243-278 114-150 (305)
118 2bwj_A Adenylate kinase 5; pho 89.0 0.19 6.5E-06 50.1 3.0 26 254-279 12-37 (199)
119 1zd8_A GTP:AMP phosphotransfer 88.9 0.16 5.5E-06 52.3 2.4 27 252-278 5-31 (227)
120 2qt1_A Nicotinamide riboside k 88.9 0.14 4.8E-06 51.9 1.9 26 253-278 20-45 (207)
121 2w0m_A SSO2452; RECA, SSPF, un 88.9 0.26 9E-06 50.1 4.0 30 253-282 22-51 (235)
122 3te6_A Regulatory protein SIR3 88.9 0.3 1E-05 53.7 4.7 39 243-281 34-72 (318)
123 1tev_A UMP-CMP kinase; ploop, 88.8 0.26 8.8E-06 48.8 3.8 25 254-278 3-27 (196)
124 2gza_A Type IV secretion syste 88.8 0.099 3.4E-06 58.5 0.8 28 253-280 174-201 (361)
125 2og2_A Putative signal recogni 88.8 0.3 1E-05 54.7 4.6 47 236-282 128-185 (359)
126 2wwf_A Thymidilate kinase, put 88.7 0.2 7E-06 50.5 3.0 27 254-280 10-36 (212)
127 2c95_A Adenylate kinase 1; tra 88.7 0.23 7.8E-06 49.4 3.3 26 253-278 8-33 (196)
128 1uf9_A TT1252 protein; P-loop, 88.6 0.23 7.8E-06 49.7 3.3 26 252-277 6-31 (203)
129 4a74_A DNA repair and recombin 88.6 0.19 6.5E-06 51.2 2.7 28 252-279 23-50 (231)
130 2cdn_A Adenylate kinase; phosp 88.6 0.25 8.4E-06 49.8 3.5 28 251-278 17-44 (201)
131 3tif_A Uncharacterized ABC tra 88.5 0.19 6.4E-06 52.8 2.6 27 252-278 29-55 (235)
132 1lv7_A FTSH; alpha/beta domain 88.5 0.26 8.9E-06 51.7 3.7 26 253-278 44-69 (257)
133 2l53_B CAM, voltage-gated sodi 88.4 0.31 1.1E-05 34.7 2.8 20 917-936 6-25 (31)
134 3dl0_A Adenylate kinase; phosp 88.3 0.2 6.9E-06 51.0 2.7 22 257-278 3-24 (216)
135 2i3b_A HCR-ntpase, human cance 88.3 0.24 8.2E-06 50.2 3.1 25 255-279 2-26 (189)
136 2ehv_A Hypothetical protein PH 88.3 0.27 9.2E-06 50.8 3.6 28 252-279 28-55 (251)
137 1vma_A Cell division protein F 88.2 0.35 1.2E-05 52.9 4.7 46 237-282 79-132 (306)
138 2vli_A Antibiotic resistance p 88.2 0.18 6.2E-06 49.6 2.1 25 254-278 5-29 (183)
139 2p5t_B PEZT; postsegregational 88.2 0.21 7E-06 52.7 2.7 27 252-278 30-56 (253)
140 2qz4_A Paraplegin; AAA+, SPG7, 88.2 0.28 9.7E-06 51.1 3.7 27 252-278 37-63 (262)
141 3nwj_A ATSK2; P loop, shikimat 88.1 0.22 7.6E-06 52.8 2.9 25 254-278 48-72 (250)
142 1zak_A Adenylate kinase; ATP:A 88.1 0.23 7.9E-06 50.9 3.0 26 254-279 5-30 (222)
143 1nn5_A Similar to deoxythymidy 88.0 0.27 9.2E-06 49.7 3.4 29 252-280 7-35 (215)
144 2z4s_A Chromosomal replication 88.0 0.4 1.4E-05 55.0 5.1 41 241-281 116-157 (440)
145 2yhs_A FTSY, cell division pro 87.7 0.36 1.2E-05 56.2 4.5 49 235-283 265-322 (503)
146 2xk0_A Polycomb protein PCL; t 87.7 3.5 0.00012 34.6 9.0 49 117-165 17-65 (69)
147 1a7j_A Phosphoribulokinase; tr 87.6 0.19 6.5E-06 54.5 2.0 26 254-279 5-30 (290)
148 3a4m_A L-seryl-tRNA(SEC) kinas 87.6 0.37 1.3E-05 51.0 4.3 28 254-281 4-31 (260)
149 1nij_A Hypothetical protein YJ 87.6 0.24 8.4E-06 54.2 2.9 24 254-277 4-27 (318)
150 1ukz_A Uridylate kinase; trans 87.5 0.3 1E-05 49.0 3.4 26 253-278 14-39 (203)
151 2gks_A Bifunctional SAT/APS ki 87.3 0.54 1.8E-05 55.6 5.8 50 231-280 345-398 (546)
152 1y63_A LMAJ004144AAA protein; 87.3 0.34 1.1E-05 48.3 3.5 24 254-277 10-33 (184)
153 3syl_A Protein CBBX; photosynt 87.3 0.49 1.7E-05 50.7 5.1 30 252-281 65-94 (309)
154 2v54_A DTMP kinase, thymidylat 87.2 0.22 7.5E-06 50.0 2.1 25 254-278 4-28 (204)
155 2ze6_A Isopentenyl transferase 87.2 0.31 1E-05 51.6 3.3 23 256-278 3-25 (253)
156 4fcw_A Chaperone protein CLPB; 87.2 0.37 1.3E-05 51.7 4.0 27 254-280 47-73 (311)
157 2kxw_B Sodium channel protein 87.2 0.28 9.7E-06 33.8 2.0 19 917-935 6-24 (27)
158 1sxj_C Activator 1 40 kDa subu 87.2 0.46 1.6E-05 52.1 4.9 37 244-280 36-72 (340)
159 1iqp_A RFCS; clamp loader, ext 87.2 0.53 1.8E-05 50.5 5.3 35 245-279 37-71 (327)
160 1zu4_A FTSY; GTPase, signal re 87.1 0.45 1.5E-05 52.3 4.7 31 253-283 104-134 (320)
161 3gn4_A Myosin-VI; unconvention 87.1 2 6.8E-05 41.7 8.6 23 917-939 45-67 (148)
162 3uk6_A RUVB-like 2; hexameric 86.8 0.53 1.8E-05 51.9 5.1 25 255-279 71-95 (368)
163 2oap_1 GSPE-2, type II secreti 86.8 0.28 9.6E-06 57.5 3.0 26 254-279 260-285 (511)
164 2qby_A CDC6 homolog 1, cell di 86.7 0.22 7.6E-06 54.7 2.0 31 250-280 41-71 (386)
165 1ixz_A ATP-dependent metallopr 86.7 0.3 1E-05 51.1 2.9 25 254-278 49-73 (254)
166 3pvs_A Replication-associated 86.6 0.41 1.4E-05 55.1 4.2 36 243-278 39-74 (447)
167 4edh_A DTMP kinase, thymidylat 86.6 0.39 1.3E-05 49.6 3.6 28 254-281 6-33 (213)
168 2v1u_A Cell division control p 86.6 0.21 7.1E-06 55.0 1.7 30 251-280 41-70 (387)
169 3r20_A Cytidylate kinase; stru 86.6 0.36 1.2E-05 50.8 3.3 26 254-279 9-34 (233)
170 1vht_A Dephospho-COA kinase; s 86.5 0.29 9.9E-06 49.9 2.6 23 254-276 4-26 (218)
171 2bjv_A PSP operon transcriptio 86.5 0.41 1.4E-05 50.4 3.8 26 253-278 28-53 (265)
172 1e4v_A Adenylate kinase; trans 86.5 0.33 1.1E-05 49.5 3.0 22 257-278 3-24 (214)
173 2if2_A Dephospho-COA kinase; a 86.4 0.27 9.2E-06 49.5 2.3 21 256-276 3-23 (204)
174 3b85_A Phosphate starvation-in 86.4 0.48 1.6E-05 48.7 4.1 32 243-277 14-45 (208)
175 1sxj_E Activator 1 40 kDa subu 86.3 0.29 1E-05 53.6 2.6 25 256-280 38-62 (354)
176 1jjv_A Dephospho-COA kinase; P 86.3 0.31 1.1E-05 49.2 2.6 21 256-276 4-24 (206)
177 1m8p_A Sulfate adenylyltransfe 86.2 0.56 1.9E-05 55.7 5.2 31 251-281 393-423 (573)
178 2ff7_A Alpha-hemolysin translo 86.2 0.27 9.1E-06 52.0 2.2 26 253-278 34-59 (247)
179 3tqc_A Pantothenate kinase; bi 86.2 0.53 1.8E-05 51.8 4.6 27 254-280 92-118 (321)
180 1g8f_A Sulfate adenylyltransfe 86.2 0.3 1E-05 57.1 2.8 45 234-280 377-421 (511)
181 3b9p_A CG5977-PA, isoform A; A 86.2 0.35 1.2E-05 51.8 3.1 26 253-278 53-78 (297)
182 1mv5_A LMRA, multidrug resista 86.1 0.33 1.1E-05 51.0 2.8 28 252-279 26-53 (243)
183 2cbz_A Multidrug resistance-as 86.1 0.31 1E-05 51.2 2.6 27 252-278 29-55 (237)
184 3co5_A Putative two-component 86.1 0.16 5.4E-06 48.7 0.3 24 252-275 25-48 (143)
185 1ko7_A HPR kinase/phosphatase; 86.1 0.35 1.2E-05 53.1 3.1 24 254-277 144-167 (314)
186 2ghi_A Transport protein; mult 86.0 0.31 1.1E-05 51.9 2.6 27 252-278 44-70 (260)
187 2onk_A Molybdate/tungstate ABC 85.9 0.37 1.3E-05 50.8 3.0 26 252-278 23-48 (240)
188 1knx_A Probable HPR(Ser) kinas 85.9 0.31 1.1E-05 53.4 2.6 23 254-276 147-169 (312)
189 1jr3_A DNA polymerase III subu 85.9 0.73 2.5E-05 50.6 5.7 30 251-280 35-64 (373)
190 2xb4_A Adenylate kinase; ATP-b 85.8 0.41 1.4E-05 49.3 3.3 23 256-278 2-24 (223)
191 2d2e_A SUFC protein; ABC-ATPas 85.8 0.34 1.1E-05 51.3 2.7 25 253-277 28-52 (250)
192 1sxj_D Activator 1 41 kDa subu 85.8 0.48 1.6E-05 51.7 4.0 36 244-279 48-83 (353)
193 3lv8_A DTMP kinase, thymidylat 85.7 0.47 1.6E-05 49.9 3.8 29 254-282 27-55 (236)
194 1aky_A Adenylate kinase; ATP:A 85.6 0.46 1.6E-05 48.5 3.6 25 254-278 4-28 (220)
195 3llm_A ATP-dependent RNA helic 85.6 0.67 2.3E-05 48.0 4.8 36 237-275 62-97 (235)
196 4eaq_A DTMP kinase, thymidylat 85.5 0.52 1.8E-05 49.0 4.0 28 253-280 25-52 (229)
197 1in4_A RUVB, holliday junction 85.5 0.75 2.6E-05 50.5 5.4 27 252-278 49-75 (334)
198 2chq_A Replication factor C sm 85.4 0.42 1.4E-05 51.1 3.3 33 247-279 31-63 (319)
199 4g1u_C Hemin import ATP-bindin 85.4 0.31 1E-05 52.2 2.1 28 252-279 35-62 (266)
200 3gfo_A Cobalt import ATP-bindi 85.4 0.3 1E-05 52.6 2.0 27 252-278 32-58 (275)
201 2zu0_C Probable ATP-dependent 85.4 0.4 1.4E-05 51.2 3.1 26 252-277 44-69 (267)
202 1hqc_A RUVB; extended AAA-ATPa 85.3 1 3.5E-05 48.5 6.3 27 252-278 36-62 (324)
203 1b0u_A Histidine permease; ABC 85.2 0.35 1.2E-05 51.5 2.5 27 252-278 30-56 (262)
204 2ixe_A Antigen peptide transpo 85.2 0.36 1.2E-05 51.8 2.6 27 252-278 43-69 (271)
205 4tmk_A Protein (thymidylate ki 85.2 0.46 1.6E-05 49.1 3.3 28 255-282 4-31 (213)
206 1uj2_A Uridine-cytidine kinase 85.2 0.46 1.6E-05 49.9 3.4 27 253-279 21-47 (252)
207 3h4m_A Proteasome-activating n 85.1 0.42 1.4E-05 50.7 3.1 27 252-278 49-75 (285)
208 2pcj_A ABC transporter, lipopr 85.1 0.32 1.1E-05 50.5 2.1 25 253-277 29-53 (224)
209 2olj_A Amino acid ABC transpor 84.9 0.37 1.3E-05 51.5 2.5 27 252-278 48-74 (263)
210 1iy2_A ATP-dependent metallopr 84.9 0.43 1.5E-05 50.8 3.0 25 254-278 73-97 (278)
211 2dr3_A UPF0273 protein PH0284; 84.7 0.62 2.1E-05 47.9 4.1 30 253-282 22-51 (247)
212 3cf0_A Transitional endoplasmi 84.7 0.45 1.5E-05 51.5 3.1 27 252-278 47-73 (301)
213 1g6h_A High-affinity branched- 84.7 0.35 1.2E-05 51.3 2.2 26 253-278 32-57 (257)
214 2pt7_A CAG-ALFA; ATPase, prote 84.6 0.19 6.7E-06 55.4 0.2 28 253-280 170-197 (330)
215 2pze_A Cystic fibrosis transme 84.5 0.36 1.2E-05 50.3 2.2 27 252-278 32-58 (229)
216 1sgw_A Putative ABC transporte 84.4 0.31 1.1E-05 50.5 1.6 26 253-278 34-59 (214)
217 4ag6_A VIRB4 ATPase, type IV s 84.4 0.52 1.8E-05 52.9 3.6 30 253-282 34-63 (392)
218 3sop_A Neuronal-specific septi 84.3 0.45 1.5E-05 51.0 2.8 27 256-282 4-30 (270)
219 1cr0_A DNA primase/helicase; R 84.3 0.58 2E-05 50.2 3.8 29 252-280 33-61 (296)
220 1sxj_B Activator 1 37 kDa subu 84.2 0.81 2.8E-05 49.0 4.9 35 245-279 33-67 (323)
221 3v9p_A DTMP kinase, thymidylat 84.2 0.46 1.6E-05 49.7 2.8 29 253-281 24-52 (227)
222 1r6b_X CLPA protein; AAA+, N-t 84.2 1.2 4E-05 54.6 6.8 65 215-280 168-233 (758)
223 2px0_A Flagellar biosynthesis 84.2 0.53 1.8E-05 51.1 3.4 29 252-280 103-131 (296)
224 2cvh_A DNA repair and recombin 84.2 0.49 1.7E-05 47.8 3.0 32 245-276 9-42 (220)
225 3pfi_A Holliday junction ATP-d 84.1 0.72 2.5E-05 50.2 4.5 28 251-278 52-79 (338)
226 2ga8_A Hypothetical 39.9 kDa p 84.1 1.1 3.7E-05 50.1 5.8 41 239-279 6-49 (359)
227 1vpl_A ABC transporter, ATP-bi 84.1 0.43 1.5E-05 50.8 2.5 26 252-277 39-64 (256)
228 2yz2_A Putative ABC transporte 84.0 0.48 1.7E-05 50.5 2.9 26 252-277 31-56 (266)
229 1w5s_A Origin recognition comp 83.9 0.97 3.3E-05 50.3 5.5 35 246-280 40-78 (412)
230 2qmh_A HPR kinase/phosphorylas 83.8 0.5 1.7E-05 48.6 2.8 27 253-279 33-59 (205)
231 1um8_A ATP-dependent CLP prote 83.8 0.63 2.1E-05 51.8 3.9 26 253-278 71-96 (376)
232 3foz_A TRNA delta(2)-isopenten 83.7 0.57 1.9E-05 51.3 3.3 31 248-278 4-34 (316)
233 2r62_A Cell division protease 83.7 0.35 1.2E-05 50.9 1.7 26 253-278 43-68 (268)
234 1ji0_A ABC transporter; ATP bi 83.5 0.47 1.6E-05 49.8 2.5 26 253-278 31-56 (240)
235 3rlf_A Maltose/maltodextrin im 83.4 0.53 1.8E-05 53.1 3.1 27 252-278 27-53 (381)
236 3nh6_A ATP-binding cassette SU 83.3 0.23 7.9E-06 54.3 0.1 28 252-279 78-105 (306)
237 3ld9_A DTMP kinase, thymidylat 83.2 0.83 2.8E-05 47.6 4.3 30 251-280 18-47 (223)
238 3pxg_A Negative regulator of g 83.2 1.4 4.7E-05 50.9 6.5 33 248-280 195-227 (468)
239 1ls1_A Signal recognition part 83.1 0.85 2.9E-05 49.4 4.5 31 253-283 97-127 (295)
240 2nq2_C Hypothetical ABC transp 83.1 0.45 1.5E-05 50.5 2.2 26 253-278 30-55 (253)
241 1g8p_A Magnesium-chelatase 38 83.0 0.56 1.9E-05 51.1 3.0 27 252-278 43-69 (350)
242 2qi9_C Vitamin B12 import ATP- 83.0 0.45 1.6E-05 50.3 2.2 26 253-278 25-50 (249)
243 3hws_A ATP-dependent CLP prote 82.9 0.72 2.5E-05 51.1 3.9 26 253-278 50-75 (363)
244 2ihy_A ABC transporter, ATP-bi 82.8 0.46 1.6E-05 51.2 2.2 26 253-278 46-71 (279)
245 3be4_A Adenylate kinase; malar 82.8 0.6 2E-05 47.8 3.0 24 255-278 6-29 (217)
246 3kl4_A SRP54, signal recogniti 82.8 1.4 4.8E-05 50.4 6.3 31 253-283 96-126 (433)
247 1a5t_A Delta prime, HOLB; zinc 82.7 1.2 4.2E-05 48.7 5.7 30 251-280 21-50 (334)
248 3u61_B DNA polymerase accessor 82.7 1.5 5.2E-05 47.4 6.3 52 223-278 16-72 (324)
249 1n0w_A DNA repair protein RAD5 82.7 0.58 2E-05 48.0 2.8 25 253-277 23-47 (243)
250 1q3t_A Cytidylate kinase; nucl 82.5 0.79 2.7E-05 47.5 3.8 27 252-278 14-40 (236)
251 1ak2_A Adenylate kinase isoenz 82.3 0.8 2.7E-05 47.4 3.7 27 253-279 15-41 (233)
252 1w7j_A Myosin VA; motor protei 82.1 1.2 4E-05 54.9 5.6 19 451-469 307-325 (795)
253 1lw7_A Transcriptional regulat 82.0 0.6 2E-05 52.0 2.8 27 254-280 170-196 (365)
254 1ojl_A Transcriptional regulat 81.9 0.61 2.1E-05 50.7 2.7 27 252-278 23-49 (304)
255 3tmk_A Thymidylate kinase; pho 81.8 0.68 2.3E-05 48.0 2.9 27 253-279 4-30 (216)
256 1ltq_A Polynucleotide kinase; 81.7 0.77 2.6E-05 49.1 3.5 23 255-277 3-25 (301)
257 2pjz_A Hypothetical protein ST 81.7 0.57 1.9E-05 50.0 2.3 25 254-278 30-54 (263)
258 2qgz_A Helicase loader, putati 81.6 1.4 4.7E-05 48.0 5.4 28 254-281 152-180 (308)
259 3tui_C Methionine import ATP-b 81.5 0.69 2.4E-05 51.8 3.1 27 252-278 52-78 (366)
260 2grj_A Dephospho-COA kinase; T 81.5 1 3.6E-05 45.6 4.1 28 251-278 9-36 (192)
261 3fvq_A Fe(3+) IONS import ATP- 81.4 0.64 2.2E-05 52.0 2.7 26 253-278 29-54 (359)
262 2ocp_A DGK, deoxyguanosine kin 81.3 0.68 2.3E-05 48.1 2.7 26 254-279 2-27 (241)
263 3d3q_A TRNA delta(2)-isopenten 81.3 0.67 2.3E-05 51.4 2.8 25 255-279 8-32 (340)
264 3kta_A Chromosome segregation 81.3 0.69 2.4E-05 45.5 2.7 24 255-278 27-50 (182)
265 2h92_A Cytidylate kinase; ross 81.2 0.71 2.4E-05 46.9 2.8 25 254-278 3-27 (219)
266 2bbs_A Cystic fibrosis transme 80.9 0.6 2E-05 50.6 2.2 27 252-278 62-88 (290)
267 2yyz_A Sugar ABC transporter, 80.8 0.76 2.6E-05 51.4 3.1 27 252-278 27-53 (359)
268 1sxj_A Activator 1 95 kDa subu 80.6 1 3.4E-05 52.7 4.1 26 253-278 76-101 (516)
269 3dm5_A SRP54, signal recogniti 80.3 1.7 5.8E-05 49.9 5.8 30 253-282 99-128 (443)
270 3d8b_A Fidgetin-like protein 1 80.3 0.83 2.8E-05 50.7 3.1 27 252-278 115-141 (357)
271 1nlf_A Regulatory protein REPA 80.3 0.85 2.9E-05 48.5 3.1 27 253-279 29-55 (279)
272 2it1_A 362AA long hypothetical 80.2 0.82 2.8E-05 51.2 3.1 27 252-278 27-53 (362)
273 3t15_A Ribulose bisphosphate c 80.2 0.87 3E-05 49.1 3.2 27 252-278 34-60 (293)
274 2wsm_A Hydrogenase expression/ 80.1 1.4 4.7E-05 44.6 4.5 29 251-279 27-55 (221)
275 2ffh_A Protein (FFH); SRP54, s 80.1 1.2 4E-05 51.0 4.4 30 253-282 97-126 (425)
276 2hf9_A Probable hydrogenase ni 80.1 1.6 5.4E-05 44.3 5.0 34 246-279 30-63 (226)
277 1z47_A CYSA, putative ABC-tran 79.9 0.77 2.6E-05 51.3 2.7 27 252-278 39-65 (355)
278 3eie_A Vacuolar protein sortin 79.9 0.97 3.3E-05 49.2 3.5 26 253-278 50-75 (322)
279 2x8a_A Nuclear valosin-contain 79.6 0.85 2.9E-05 48.8 2.8 25 254-278 44-68 (274)
280 1v43_A Sugar-binding transport 79.6 0.88 3E-05 51.1 3.1 27 252-278 35-61 (372)
281 2f6r_A COA synthase, bifunctio 79.6 0.86 3E-05 48.9 2.9 24 253-276 74-97 (281)
282 3m6a_A ATP-dependent protease 79.5 1.1 3.8E-05 52.7 4.1 28 251-278 105-132 (543)
283 3exa_A TRNA delta(2)-isopenten 79.2 0.75 2.6E-05 50.5 2.3 24 255-278 4-27 (322)
284 1g29_1 MALK, maltose transport 79.2 0.83 2.9E-05 51.3 2.7 26 253-278 28-53 (372)
285 1vec_A ATP-dependent RNA helic 79.1 2.8 9.6E-05 41.7 6.4 57 212-274 4-60 (206)
286 3zvl_A Bifunctional polynucleo 79.0 0.7 2.4E-05 52.6 2.0 28 251-278 255-282 (416)
287 2qm8_A GTPase/ATPase; G protei 78.9 1.5 5.2E-05 48.3 4.7 42 242-283 42-84 (337)
288 3ch4_B Pmkase, phosphomevalona 78.9 0.99 3.4E-05 46.3 3.0 24 255-278 12-35 (202)
289 3gd7_A Fusion complex of cysti 78.8 0.87 3E-05 51.5 2.7 28 252-279 45-72 (390)
290 1j8m_F SRP54, signal recogniti 78.7 1.4 4.9E-05 47.7 4.3 30 254-283 98-127 (297)
291 2obl_A ESCN; ATPase, hydrolase 78.6 0.86 3E-05 50.6 2.6 37 242-278 59-95 (347)
292 3d31_A Sulfate/molybdate ABC t 78.6 0.71 2.4E-05 51.4 1.9 26 252-277 24-49 (348)
293 3pxi_A Negative regulator of g 78.5 2.3 7.8E-05 52.1 6.5 33 248-280 195-227 (758)
294 3pey_A ATP-dependent RNA helic 78.4 2.9 0.0001 45.6 6.9 62 210-275 4-65 (395)
295 1xwi_A SKD1 protein; VPS4B, AA 78.2 0.99 3.4E-05 49.4 2.9 25 254-278 45-69 (322)
296 2yv5_A YJEQ protein; hydrolase 78.2 1.3 4.6E-05 48.0 3.9 30 246-275 157-186 (302)
297 3ice_A Transcription terminati 78.0 1.9 6.5E-05 48.7 5.1 47 235-281 155-201 (422)
298 1x6v_B Bifunctional 3'-phospho 78.0 1.7 5.8E-05 52.1 5.1 28 253-280 51-78 (630)
299 3eph_A TRNA isopentenyltransfe 77.7 1 3.6E-05 51.0 2.9 23 256-278 4-26 (409)
300 3crm_A TRNA delta(2)-isopenten 77.6 0.97 3.3E-05 49.8 2.6 25 254-278 5-29 (323)
301 3sr0_A Adenylate kinase; phosp 77.6 1.3 4.4E-05 45.4 3.4 22 257-278 3-24 (206)
302 3hjn_A DTMP kinase, thymidylat 77.4 1.5 5E-05 44.5 3.7 26 257-282 3-28 (197)
303 2npi_A Protein CLP1; CLP1-PCF1 77.2 0.79 2.7E-05 52.9 1.8 32 252-283 136-167 (460)
304 3fdi_A Uncharacterized protein 77.1 1 3.5E-05 45.9 2.4 24 255-278 7-30 (201)
305 2dpy_A FLII, flagellum-specifi 77.1 1.3 4.3E-05 50.9 3.5 38 242-279 145-182 (438)
306 2qp9_X Vacuolar protein sortin 77.0 1.2 4.1E-05 49.4 3.1 25 254-278 84-108 (355)
307 2gxq_A Heat resistant RNA depe 76.8 3 0.0001 41.5 5.8 55 220-279 9-64 (207)
308 3euj_A Chromosome partition pr 76.4 1.3 4.5E-05 51.4 3.4 29 255-283 30-58 (483)
309 2zts_A Putative uncharacterize 76.3 1.9 6.6E-05 44.1 4.4 28 253-280 29-56 (251)
310 1oxx_K GLCV, glucose, ABC tran 76.3 0.75 2.6E-05 51.3 1.2 27 252-278 29-55 (353)
311 3upu_A ATP-dependent DNA helic 76.1 2.5 8.6E-05 48.5 5.6 29 255-283 46-74 (459)
312 1t6n_A Probable ATP-dependent 75.9 6.5 0.00022 39.6 8.2 64 209-278 12-75 (220)
313 3ber_A Probable ATP-dependent 75.7 3.4 0.00012 43.1 6.1 64 211-280 43-107 (249)
314 1tue_A Replication protein E1; 75.6 1.3 4.6E-05 45.6 2.8 36 243-278 46-82 (212)
315 1w36_D RECD, exodeoxyribonucle 75.6 3.4 0.00012 49.3 6.7 28 254-281 164-191 (608)
316 3hdt_A Putative kinase; struct 75.5 1.4 4.7E-05 45.9 2.9 26 254-279 14-39 (223)
317 3b5x_A Lipid A export ATP-bind 75.3 1 3.5E-05 53.5 2.1 29 252-280 367-395 (582)
318 2qen_A Walker-type ATPase; unk 75.0 2 7E-05 46.2 4.3 23 255-277 32-54 (350)
319 3vfd_A Spastin; ATPase, microt 74.9 1.4 4.6E-05 49.4 2.9 25 253-277 147-171 (389)
320 1pzn_A RAD51, DNA repair and r 74.7 1.4 4.9E-05 48.8 3.0 36 243-278 118-155 (349)
321 2xau_A PRE-mRNA-splicing facto 74.3 3.2 0.00011 51.0 6.3 60 210-275 71-130 (773)
322 1tf7_A KAIC; homohexamer, hexa 74.1 1.3 4.3E-05 52.0 2.5 37 244-280 27-66 (525)
323 3umf_A Adenylate kinase; rossm 74.1 2.2 7.5E-05 44.1 4.0 27 252-278 27-53 (217)
324 1qde_A EIF4A, translation init 74.0 3.1 0.00011 42.0 5.2 62 212-279 15-77 (224)
325 3k1j_A LON protease, ATP-depen 73.8 1.7 5.8E-05 51.8 3.5 25 255-279 61-85 (604)
326 2b8t_A Thymidine kinase; deoxy 73.4 2.5 8.6E-05 43.9 4.3 28 253-280 11-38 (223)
327 3b60_A Lipid A export ATP-bind 73.2 0.95 3.3E-05 53.7 1.1 27 252-278 367-393 (582)
328 3hu3_A Transitional endoplasmi 73.1 1.6 5.5E-05 50.8 3.0 26 252-277 236-261 (489)
329 2axn_A 6-phosphofructo-2-kinas 73.0 2.1 7.2E-05 50.2 4.0 30 252-281 33-62 (520)
330 3fht_A ATP-dependent RNA helic 72.8 3.5 0.00012 45.4 5.7 67 209-279 23-90 (412)
331 1yqt_A RNAse L inhibitor; ATP- 72.7 1.6 5.5E-05 51.3 2.9 27 253-279 46-72 (538)
332 2f9l_A RAB11B, member RAS onco 72.6 1.9 6.5E-05 42.9 3.0 20 256-275 7-26 (199)
333 2yl4_A ATP-binding cassette SU 72.5 1.4 4.7E-05 52.5 2.3 27 252-278 368-394 (595)
334 3qf4_B Uncharacterized ABC tra 72.3 1.4 4.9E-05 52.4 2.4 27 252-278 379-405 (598)
335 2fna_A Conserved hypothetical 72.1 3 0.0001 45.0 4.7 24 255-278 31-54 (357)
336 1qvr_A CLPB protein; coiled co 72.1 2.1 7.2E-05 53.2 3.9 32 249-280 186-217 (854)
337 2xxa_A Signal recognition part 71.8 2.7 9.2E-05 48.1 4.4 30 252-281 98-127 (433)
338 1oix_A RAS-related protein RAB 71.6 1.8 6.2E-05 42.9 2.6 21 256-276 31-51 (191)
339 2c9o_A RUVB-like 1; hexameric 71.3 3.7 0.00013 47.1 5.4 26 254-279 63-88 (456)
340 4hlc_A DTMP kinase, thymidylat 71.0 2.3 7.9E-05 43.4 3.3 25 255-279 3-27 (205)
341 3a8t_A Adenylate isopentenyltr 71.0 1.6 5.6E-05 48.2 2.3 27 252-278 38-64 (339)
342 1bif_A 6-phosphofructo-2-kinas 70.9 2.5 8.5E-05 48.7 3.9 29 252-280 37-65 (469)
343 2qag_B Septin-6, protein NEDD5 70.7 2 6.9E-05 49.0 3.0 26 252-277 38-65 (427)
344 1ry6_A Internal kinesin; kines 70.6 3.1 0.0001 46.5 4.4 36 236-271 66-102 (360)
345 1e9r_A Conjugal transfer prote 70.4 1.9 6.4E-05 48.9 2.7 29 253-281 52-80 (437)
346 3ozx_A RNAse L inhibitor; ATP 70.0 2 6.7E-05 50.6 2.8 28 252-279 23-50 (538)
347 2ce7_A Cell division protein F 69.8 2.5 8.5E-05 49.0 3.6 25 253-277 48-72 (476)
348 2rcn_A Probable GTPase ENGC; Y 69.8 2.3 7.9E-05 47.4 3.2 27 252-278 213-239 (358)
349 1tq4_A IIGP1, interferon-induc 69.7 2.6 8.9E-05 47.9 3.7 25 254-278 69-93 (413)
350 1u0l_A Probable GTPase ENGC; p 69.6 2.3 8E-05 45.9 3.1 25 252-276 167-191 (301)
351 1p5z_B DCK, deoxycytidine kina 69.5 1.1 3.6E-05 47.3 0.3 27 252-278 22-48 (263)
352 1hv8_A Putative ATP-dependent 69.5 6.8 0.00023 42.2 6.9 62 212-278 7-68 (367)
353 2pl3_A Probable ATP-dependent 69.2 5.7 0.00019 40.5 5.9 64 211-280 25-89 (236)
354 1qvr_A CLPB protein; coiled co 69.2 2.5 8.6E-05 52.5 3.7 25 255-279 589-613 (854)
355 3j16_B RLI1P; ribosome recycli 69.1 2.2 7.4E-05 51.1 2.9 28 252-279 101-128 (608)
356 4a82_A Cystic fibrosis transme 69.1 1.3 4.4E-05 52.6 1.0 27 252-278 365-391 (578)
357 2gno_A DNA polymerase III, gam 68.7 4.1 0.00014 44.2 4.9 34 244-277 8-41 (305)
358 2zan_A Vacuolar protein sortin 68.6 2.2 7.6E-05 48.8 2.8 26 253-278 166-191 (444)
359 3qf4_A ABC transporter, ATP-bi 68.6 1.5 5.3E-05 52.1 1.5 28 252-279 367-394 (587)
360 1z2a_A RAS-related protein RAB 68.4 2.7 9.3E-05 39.7 3.0 21 255-275 6-26 (168)
361 1ypw_A Transitional endoplasmi 68.3 2.1 7.2E-05 52.9 2.7 27 252-278 236-262 (806)
362 4hcz_A PHD finger protein 1; p 68.3 17 0.00058 29.5 7.0 49 117-165 5-55 (58)
363 3lda_A DNA repair protein RAD5 68.1 2.1 7.3E-05 48.4 2.5 33 243-275 165-199 (400)
364 2p67_A LAO/AO transport system 68.0 5.3 0.00018 43.9 5.6 43 241-283 42-85 (341)
365 3qii_A PHD finger protein 20; 67.9 6.6 0.00022 34.5 4.9 56 103-166 17-73 (85)
366 3e1s_A Exodeoxyribonuclease V, 67.9 4 0.00014 48.4 4.9 29 254-282 204-232 (574)
367 2qag_C Septin-7; cell cycle, c 67.7 2.2 7.6E-05 48.6 2.5 25 252-276 29-53 (418)
368 2dhr_A FTSH; AAA+ protein, hex 67.6 2.4 8.3E-05 49.4 2.9 25 254-278 64-88 (499)
369 2zej_A Dardarin, leucine-rich 67.5 2.3 7.8E-05 41.7 2.3 20 256-275 4-23 (184)
370 3pxi_A Negative regulator of g 67.2 2.9 9.8E-05 51.2 3.6 24 256-279 523-546 (758)
371 1yrb_A ATP(GTP)binding protein 67.1 3.7 0.00013 42.6 3.9 28 252-279 12-39 (262)
372 2r44_A Uncharacterized protein 66.9 3.2 0.00011 45.0 3.5 24 255-278 47-70 (331)
373 3hr8_A Protein RECA; alpha and 66.9 3.6 0.00012 45.9 4.0 39 243-281 47-88 (356)
374 1tf7_A KAIC; homohexamer, hexa 66.8 2.9 9.8E-05 48.9 3.3 36 245-280 270-307 (525)
375 2qnr_A Septin-2, protein NEDD5 66.8 2.3 7.8E-05 46.1 2.3 25 252-276 16-40 (301)
376 2dyk_A GTP-binding protein; GT 66.7 3.1 0.00011 39.1 3.0 20 256-275 3-22 (161)
377 3eiq_A Eukaryotic initiation f 66.5 7.6 0.00026 42.8 6.6 34 242-278 68-102 (414)
378 1r6b_X CLPA protein; AAA+, N-t 66.4 3 0.0001 50.9 3.6 24 255-278 489-512 (758)
379 1q0u_A Bstdead; DEAD protein, 66.2 5.9 0.0002 39.9 5.2 62 211-278 4-66 (219)
380 3fmp_B ATP-dependent RNA helic 66.2 5.5 0.00019 45.4 5.5 61 209-273 90-150 (479)
381 2ce2_X GTPase HRAS; signaling 66.0 2.9 9.9E-05 39.2 2.6 20 256-275 5-24 (166)
382 2wji_A Ferrous iron transport 65.8 3.1 0.00011 39.9 2.8 21 255-275 4-24 (165)
383 2fz4_A DNA repair protein RAD2 65.8 3.4 0.00012 42.9 3.4 33 243-278 100-132 (237)
384 2zr9_A Protein RECA, recombina 65.5 3.6 0.00012 45.6 3.6 30 253-282 60-89 (349)
385 1u8z_A RAS-related protein RAL 65.5 3.4 0.00012 38.9 3.0 20 256-275 6-25 (168)
386 2v3c_C SRP54, signal recogniti 65.4 3.2 0.00011 47.5 3.2 29 254-282 99-127 (432)
387 2equ_A PHD finger protein 20-l 65.3 15 0.00052 31.4 6.7 51 117-167 11-62 (74)
388 3bh0_A DNAB-like replicative h 65.3 3.8 0.00013 44.5 3.7 28 252-279 66-93 (315)
389 1s2m_A Putative ATP-dependent 65.3 8.9 0.00031 42.1 6.9 60 210-275 20-79 (400)
390 3bk7_A ABC transporter ATP-bin 65.1 2.8 9.5E-05 50.1 2.8 27 253-279 116-142 (607)
391 3p32_A Probable GTPase RV1496/ 65.1 6.5 0.00022 43.4 5.6 44 239-282 63-107 (355)
392 3fe2_A Probable ATP-dependent 65.0 11 0.00037 38.7 7.1 65 209-279 27-92 (242)
393 2wjg_A FEOB, ferrous iron tran 64.9 3.3 0.00011 40.3 2.8 21 255-275 8-28 (188)
394 3ozx_A RNAse L inhibitor; ATP 64.4 2.7 9.3E-05 49.4 2.5 27 253-279 293-319 (538)
395 2j37_W Signal recognition part 64.4 7.2 0.00024 45.5 6.0 30 253-282 100-129 (504)
396 2zj8_A DNA helicase, putative 64.2 4.4 0.00015 49.1 4.4 63 213-280 3-66 (720)
397 2www_A Methylmalonic aciduria 64.1 6.7 0.00023 43.3 5.5 29 254-282 74-102 (349)
398 1ek0_A Protein (GTP-binding pr 64.0 3.7 0.00013 38.7 3.0 20 256-275 5-24 (170)
399 2ged_A SR-beta, signal recogni 64.0 3.6 0.00012 40.2 3.0 21 255-275 49-69 (193)
400 4etp_A Kinesin-like protein KA 63.9 5.7 0.00019 45.0 4.9 35 236-271 124-158 (403)
401 3gbj_A KIF13B protein; kinesin 63.9 5.4 0.00019 44.3 4.7 34 237-271 76-110 (354)
402 1pui_A ENGB, probable GTP-bind 63.8 2.2 7.5E-05 42.5 1.4 24 252-275 24-47 (210)
403 1ky3_A GTP-binding protein YPT 63.6 3.8 0.00013 39.3 3.0 22 254-275 8-29 (182)
404 1v5w_A DMC1, meiotic recombina 63.6 3.9 0.00013 45.0 3.5 33 244-276 110-144 (343)
405 4dck_A Sodium channel protein 63.5 6.2 0.00021 39.2 4.4 22 894-915 130-151 (168)
406 4i1u_A Dephospho-COA kinase; s 63.4 2.2 7.5E-05 44.0 1.3 46 255-304 10-64 (210)
407 1kao_A RAP2A; GTP-binding prot 63.4 3.9 0.00013 38.4 3.0 21 255-275 4-24 (167)
408 3b6e_A Interferon-induced heli 63.3 3.3 0.00011 41.3 2.6 35 242-279 39-73 (216)
409 2r2a_A Uncharacterized protein 63.3 3.5 0.00012 41.9 2.8 19 256-274 7-25 (199)
410 3dc4_A Kinesin-like protein NO 63.2 5.3 0.00018 44.3 4.4 35 236-271 77-112 (344)
411 3p8d_A Medulloblastoma antigen 63.0 10 0.00034 31.9 5.0 46 119-167 13-59 (67)
412 1bg2_A Kinesin; motor protein, 62.8 5.7 0.0002 43.6 4.6 21 251-271 75-95 (325)
413 1qhl_A Protein (cell division 62.8 2 6.8E-05 44.8 0.9 26 256-281 29-54 (227)
414 1c1y_A RAS-related protein RAP 62.8 4.1 0.00014 38.4 3.0 20 256-275 5-24 (167)
415 1z08_A RAS-related protein RAB 62.7 4 0.00014 38.7 3.0 21 255-275 7-27 (170)
416 3bor_A Human initiation factor 62.7 7.3 0.00025 39.9 5.2 28 243-273 59-86 (237)
417 1z0j_A RAB-22, RAS-related pro 62.6 4.1 0.00014 38.5 3.0 19 256-274 8-26 (170)
418 3ux8_A Excinuclease ABC, A sub 62.6 2.1 7.1E-05 51.7 1.0 23 253-275 347-369 (670)
419 3szr_A Interferon-induced GTP- 62.4 3.1 0.0001 49.7 2.5 21 257-277 48-68 (608)
420 2orw_A Thymidine kinase; TMTK, 62.3 4.9 0.00017 40.1 3.6 25 254-278 3-27 (184)
421 1wms_A RAB-9, RAB9, RAS-relate 62.2 4.1 0.00014 38.9 3.0 21 255-275 8-28 (177)
422 4a14_A Kinesin, kinesin-like p 62.0 6 0.00021 43.8 4.6 35 236-271 66-101 (344)
423 3l0o_A Transcription terminati 61.9 7.7 0.00026 43.8 5.4 59 207-280 143-201 (427)
424 2fn4_A P23, RAS-related protei 61.8 3.8 0.00013 39.2 2.6 22 254-275 9-30 (181)
425 3ly5_A ATP-dependent RNA helic 61.8 9.1 0.00031 40.1 5.8 37 241-280 81-118 (262)
426 2r6a_A DNAB helicase, replicat 61.8 4.6 0.00016 46.2 3.7 28 253-280 202-229 (454)
427 2erx_A GTP-binding protein DI- 61.8 4.1 0.00014 38.5 2.8 21 255-275 4-24 (172)
428 2m0o_A PHD finger protein 1; t 61.6 30 0.001 29.6 7.6 48 117-164 28-77 (79)
429 3thx_A DNA mismatch repair pro 61.4 4.7 0.00016 50.5 4.0 30 253-282 661-692 (934)
430 1m2o_B GTP-binding protein SAR 61.1 4.1 0.00014 40.2 2.8 32 244-275 13-44 (190)
431 3nwn_A Kinesin-like protein KI 60.8 5.8 0.0002 44.2 4.2 29 242-271 94-122 (359)
432 2y65_A Kinesin, kinesin heavy 60.7 6.5 0.00022 43.9 4.6 36 235-271 66-102 (365)
433 2wbe_C Bipolar kinesin KRP-130 60.7 7.1 0.00024 43.7 4.9 35 236-271 83-118 (373)
434 1nrj_B SR-beta, signal recogni 60.6 4.5 0.00015 40.5 3.0 23 254-276 12-34 (218)
435 1u94_A RECA protein, recombina 60.5 5.6 0.00019 44.2 4.0 30 253-282 62-91 (356)
436 2a9k_A RAS-related protein RAL 60.4 4.7 0.00016 38.8 3.0 21 255-275 19-39 (187)
437 3lxx_A GTPase IMAP family memb 60.4 4.2 0.00014 41.8 2.8 22 254-275 29-50 (239)
438 2gj8_A MNME, tRNA modification 60.2 4.6 0.00016 39.1 2.9 22 254-275 4-25 (172)
439 2lkc_A Translation initiation 60.2 4.5 0.00015 38.7 2.8 23 253-275 7-29 (178)
440 1z0f_A RAB14, member RAS oncog 60.2 4.8 0.00016 38.4 3.0 21 255-275 16-36 (179)
441 1g16_A RAS-related protein SEC 60.1 4.3 0.00015 38.4 2.6 20 256-275 5-24 (170)
442 2fh5_B SR-beta, signal recogni 60.0 4.9 0.00017 40.1 3.2 25 251-275 4-28 (214)
443 2va8_A SSO2462, SKI2-type heli 59.9 5.5 0.00019 48.1 4.2 63 213-280 10-73 (715)
444 4dsu_A GTPase KRAS, isoform 2B 59.9 4.8 0.00016 38.9 3.0 20 256-275 6-25 (189)
445 2owm_A Nckin3-434, related to 59.9 7.7 0.00026 44.5 5.1 35 236-271 119-154 (443)
446 1upt_A ARL1, ADP-ribosylation 59.9 4.9 0.00017 38.1 3.0 20 255-274 8-27 (171)
447 3j16_B RLI1P; ribosome recycli 59.9 4.1 0.00014 48.6 3.0 25 255-279 379-403 (608)
448 1x88_A Kinesin-like protein KI 59.8 7.3 0.00025 43.4 4.8 35 236-271 71-106 (359)
449 3pqc_A Probable GTP-binding pr 59.8 3.9 0.00013 39.7 2.4 20 256-275 25-44 (195)
450 1r2q_A RAS-related protein RAB 59.7 4.9 0.00017 37.8 3.0 21 255-275 7-27 (170)
451 2nzj_A GTP-binding protein REM 59.7 4.6 0.00016 38.4 2.8 20 256-275 6-25 (175)
452 3con_A GTPase NRAS; structural 59.7 4.8 0.00017 39.2 3.0 21 255-275 22-42 (190)
453 3lre_A Kinesin-like protein KI 59.6 5.9 0.0002 44.1 4.0 21 251-271 103-123 (355)
454 1goj_A Kinesin, kinesin heavy 59.6 6.5 0.00022 43.7 4.3 36 235-271 62-98 (355)
455 1r8s_A ADP-ribosylation factor 59.5 5 0.00017 37.8 3.0 19 257-275 3-21 (164)
456 3bc1_A RAS-related protein RAB 59.4 5 0.00017 38.8 3.0 21 255-275 12-32 (195)
457 1yqt_A RNAse L inhibitor; ATP- 59.3 4 0.00014 48.0 2.7 26 253-278 311-336 (538)
458 3bk7_A ABC transporter ATP-bin 59.3 4 0.00014 48.8 2.7 26 253-278 381-406 (607)
459 1g41_A Heat shock protein HSLU 59.3 5.7 0.00019 45.6 3.9 25 254-278 50-74 (444)
460 2nr8_A Kinesin-like protein KI 59.2 6.4 0.00022 43.8 4.2 29 242-271 93-121 (358)
461 3kkq_A RAS-related protein M-R 59.1 5.1 0.00017 38.7 3.0 21 255-275 19-39 (183)
462 1wb9_A DNA mismatch repair pro 59.0 4.5 0.00015 49.9 3.2 25 252-276 605-629 (800)
463 2zfi_A Kinesin-like protein KI 58.9 7.2 0.00025 43.5 4.6 21 251-271 87-107 (366)
464 1c9k_A COBU, adenosylcobinamid 58.9 4.3 0.00015 40.8 2.4 19 257-275 2-20 (180)
465 3u06_A Protein claret segregat 58.7 5.8 0.0002 45.0 3.8 21 251-271 136-156 (412)
466 3ihw_A Centg3; RAS, centaurin, 58.7 5.1 0.00017 39.3 3.0 24 252-275 18-41 (184)
467 3clv_A RAB5 protein, putative; 58.6 5.1 0.00018 38.9 3.0 22 255-276 8-29 (208)
468 2z43_A DNA repair and recombin 58.5 4.1 0.00014 44.4 2.5 35 243-277 94-130 (324)
469 1u0j_A DNA replication protein 58.4 10 0.00036 40.4 5.5 39 240-278 88-128 (267)
470 2g6b_A RAS-related protein RAB 58.4 5.3 0.00018 38.3 3.0 21 255-275 11-31 (180)
471 2bov_A RAla, RAS-related prote 58.1 5.3 0.00018 39.3 3.0 21 255-275 15-35 (206)
472 1mhn_A SurviVal motor neuron p 58.1 36 0.0012 27.4 7.5 49 118-166 6-58 (59)
473 1svi_A GTP-binding protein YSX 58.0 4.4 0.00015 39.6 2.4 22 254-275 23-44 (195)
474 2iw3_A Elongation factor 3A; a 57.9 4.3 0.00015 51.1 2.7 24 252-275 459-482 (986)
475 2bme_A RAB4A, RAS-related prot 57.8 4.9 0.00017 38.8 2.6 21 255-275 11-31 (186)
476 3t0q_A AGR253WP; kinesin, alph 57.8 6.8 0.00023 43.5 4.0 22 251-272 83-104 (349)
477 2efe_B Small GTP-binding prote 57.8 5.4 0.00019 38.2 3.0 22 254-275 12-33 (181)
478 1t5c_A CENP-E protein, centrom 57.7 6.1 0.00021 43.9 3.7 21 251-271 75-95 (349)
479 3q85_A GTP-binding protein REM 57.7 5.3 0.00018 37.8 2.8 20 256-275 4-23 (169)
480 3of5_A Dethiobiotin synthetase 57.6 7.3 0.00025 40.3 4.1 29 254-282 4-33 (228)
481 1ewq_A DNA mismatch repair pro 57.5 4.7 0.00016 49.4 3.0 24 254-277 576-599 (765)
482 2i1q_A DNA repair and recombin 57.5 5 0.00017 43.5 2.9 34 243-276 85-120 (322)
483 4f4c_A Multidrug resistance pr 57.4 2.7 9.2E-05 54.8 0.9 26 252-277 1103-1128(1321)
484 2gf0_A GTP-binding protein DI- 57.3 6.2 0.00021 38.5 3.3 27 250-276 4-30 (199)
485 2y8e_A RAB-protein 6, GH09086P 57.2 5.1 0.00017 38.2 2.6 21 255-275 15-35 (179)
486 2h58_A Kinesin-like protein KI 57.0 6.7 0.00023 43.2 3.8 21 251-271 78-98 (330)
487 3nbx_X ATPase RAVA; AAA+ ATPas 56.9 7.9 0.00027 45.1 4.6 24 255-278 42-65 (500)
488 1t9h_A YLOQ, probable GTPase E 56.7 1.7 5.9E-05 47.4 -1.0 30 249-278 168-197 (307)
489 3b6u_A Kinesin-like protein KI 56.5 7.5 0.00026 43.5 4.2 35 236-271 84-119 (372)
490 2cxx_A Probable GTP-binding pr 56.5 4.9 0.00017 38.9 2.4 19 257-275 4-22 (190)
491 2oil_A CATX-8, RAS-related pro 56.4 6 0.0002 38.7 3.0 20 256-275 27-46 (193)
492 2vvg_A Kinesin-2; motor protei 56.4 7.4 0.00025 43.2 4.0 21 251-271 87-107 (350)
493 2xtp_A GTPase IMAP family memb 56.4 4.8 0.00016 41.9 2.4 22 254-275 22-43 (260)
494 3q72_A GTP-binding protein RAD 56.3 4.9 0.00017 38.0 2.3 18 257-274 5-22 (166)
495 1v8k_A Kinesin-like protein KI 56.1 6.8 0.00023 44.4 3.8 21 251-271 152-172 (410)
496 3tkl_A RAS-related protein RAB 56.1 6 0.00021 38.5 3.0 20 256-275 18-37 (196)
497 1sky_E F1-ATPase, F1-ATP synth 56.0 6.8 0.00023 45.2 3.8 43 238-280 135-177 (473)
498 1mh1_A RAC1; GTP-binding, GTPa 56.0 6.1 0.00021 37.9 3.0 19 256-274 7-25 (186)
499 3cob_A Kinesin heavy chain-lik 56.0 6 0.00021 44.2 3.3 21 251-271 77-97 (369)
500 1z06_A RAS-related protein RAB 55.9 6.1 0.00021 38.5 3.0 22 254-275 20-41 (189)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.4e-215 Score=2005.99 Aligned_cols=824 Identities=42% Similarity=0.702 Sum_probs=754.5
Q ss_pred cccCcEEEEecCCCCEEeEEEEEe---cCCeeEEEcCCCcEEEEeC----CCccc-CCCCcCCCccccccCcCcCchhHH
Q 002188 116 GKKKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVL 187 (955)
Q Consensus 116 ~~~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~l~E~siL 187 (955)
..+|.+||+|+|+++|..|+|++. +++.++|.+++|++.+|+. +++.| +||+.++++|||+.|++|||++||
T Consensus 7 ~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl 86 (1080)
T 2dfs_A 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVL 86 (1080)
T ss_dssp CCTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHH
T ss_pred cccCCEEEEECCCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHH
Confidence 345779999999999999999973 3445778888998888876 45777 699999999999999999999999
Q ss_pred HHHHHHh-hcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCC
Q 002188 188 YNLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESG 264 (955)
Q Consensus 188 ~~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESG 264 (955)
+||+.|| ..+.||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+.+++|||||||||||
T Consensus 87 ~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESG 166 (1080)
T 2dfs_A 87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESG 166 (1080)
T ss_dssp HHHHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTT
T ss_pred HHHHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Confidence 9999999 999999999999999999999999999999999998754 8999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCC
Q 002188 265 AGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEK 341 (955)
Q Consensus 265 AGKTe~~K~il~yL~~~~~~~---~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEK 341 (955)
|||||++|+||+||+++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||||
T Consensus 167 AGKTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEK 246 (1080)
T 2dfs_A 167 AGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEK 246 (1080)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCC
T ss_pred CCccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecC
Confidence 999999999999999998764 79999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHHHHH
Q 002188 342 SRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421 (955)
Q Consensus 342 sRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~i~ 421 (955)
||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++|+..||
T Consensus 247 sRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~ 326 (1080)
T 2dfs_A 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIF 326 (1080)
T ss_dssp GGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHHHHHHH
Q 002188 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 501 (955)
Q Consensus 422 ~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalak~ 501 (955)
+|||||||||||+|...+++......+++.++.||.||||++++|.++||++++.+++|.+++++|++||.++||||||+
T Consensus 327 ~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~ 406 (1080)
T 2dfs_A 327 RILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKH 406 (1080)
T ss_dssp HHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999876553333336788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCce
Q 002188 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 581 (955)
Q Consensus 502 LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~ 581 (955)
||++||+|||.+||.+|.++. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 407 lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~ 485 (1080)
T 2dfs_A 407 IYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT 485 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Confidence 999999999999999998754 3468999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCCcCCC--CCCcEEEcccccceeccchh
Q 002188 582 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGF 658 (955)
Q Consensus 582 ~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~-~~~~~f~~~~--~~~F~I~HyAG~V~Y~~~gf 658 (955)
.|+|.||++|||||++| .|||+||||||++|++||.+|++||++++ ++|++|.+++ ..+|+|+||||+|+|+++||
T Consensus 486 ~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gf 564 (1080)
T 2dfs_A 486 LIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGF 564 (1080)
T ss_dssp CCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTH
T ss_pred cccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhH
Confidence 99999999999999997 99999999999999999999999999988 9999998775 67999999999999999999
Q ss_pred hhhccccchHHHHHHHhhc-Ccch-hHHhhccccccC-C--C---------CccCCCc--cCCCCCCCCccHHHHHHHHH
Q 002188 659 LEKNRDLLHLDSIELLSSC-SCHL-PQIFASNMLSQS-N--K---------PVVGPLY--KAGGADSQKLSVATKFKGQL 722 (955)
Q Consensus 659 leKN~D~l~~d~~~ll~~S-~~~l-~~lf~~~~~~~~-~--~---------~~~~~~~--~~~~~~~~~~tv~~~f~~~L 722 (955)
|+||+|+|++|++++|++| ++++ ..+|.......+ . . ....+.+ .+++...+++||+++|+.||
T Consensus 565 leKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL 644 (1080)
T 2dfs_A 565 LEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSL 644 (1080)
T ss_dssp HHHHBCCCCHHHHHHHHTCSSCSHHHHSCC-------------------------------------CCCBHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHH
Confidence 9999999999999999999 8875 567754321100 0 0 0000000 00123445789999999999
Q ss_pred HHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccCCCh
Q 002188 723 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 802 (955)
Q Consensus 723 ~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 802 (955)
+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+
T Consensus 645 ~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 724 (1080)
T 2dfs_A 645 HLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDR 724 (1080)
T ss_dssp HHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSH
T ss_pred HHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986655589
Q ss_pred HHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccccc-chhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHHH
Q 002188 803 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGE 881 (955)
Q Consensus 803 ~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~-aav~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg~ 881 (955)
++.|+.||..+++++++|++|+||||||.+.+..||+.|...+. +|+.||++||||++|++|++++.+++.||++|||+
T Consensus 725 k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~ 804 (1080)
T 2dfs_A 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGH 804 (1080)
T ss_dssp HHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988774 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 002188 882 KIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 942 (955)
Q Consensus 882 ~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr~~~~l~~~ 942 (955)
++|+.+..++ +..||++||++||||++|+.|...+.+++.||++|||+++|+.++.++..
T Consensus 805 ~aR~~~~~lr-~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~~ 864 (1080)
T 2dfs_A 805 QARCYATFLR-RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864 (1080)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccc-cchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997764 67899999999999999999999999999999999999999999887753
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=4e-210 Score=1902.55 Aligned_cols=786 Identities=40% Similarity=0.697 Sum_probs=699.9
Q ss_pred CCCccccCccccccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcC-CCcEEEEeCCCcccCCCCcCCCcccc
Q 002188 97 PSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLP-EGKVLKVKSENLVSANPDILDGVDDL 175 (955)
Q Consensus 97 p~~~~~~~~~~w~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~-~g~~~~v~~~~~~~~np~~~~~~~Dl 175 (955)
|.+..+.++..-.++.+|..++ +||+++++++|..|+|++..++.++|.+. +|++.+|+.+++.++||+.++++|||
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~--~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~~~~Dl 88 (837)
T 1kk8_A 11 QYLAVDRKKLMKEQTAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 88 (837)
T ss_dssp TTTCCCSSSSCC--CCCCCTTT--EEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBG
T ss_pred hhhhcCHHHHHHhhhcccccCC--EEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhhcchhhh
Confidence 5566655555556777887765 89999999999999999999999999964 78899999999999999999999999
Q ss_pred ccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCc
Q 002188 176 MQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEV 253 (955)
Q Consensus 176 ~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~ 253 (955)
+.|++|||++||+||+.||..+.||||+|++|||||||+++|+|++++++.|+++... ||||||||++||++|+++++
T Consensus 89 ~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~ 168 (837)
T 1kk8_A 89 ANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRE 168 (837)
T ss_dssp GGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999998764 89999999999999999999
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhccCC-------------CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEE
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALGGG-------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~~~-------------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~ 320 (955)
||||||||||||||||++|+||+||++++++ +.|+++|+++||||||||||||++|||||||||||+
T Consensus 169 nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~ 248 (837)
T 1kk8_A 169 NQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIR 248 (837)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEE
T ss_pred CcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEE
Confidence 9999999999999999999999999998753 258899999999999999999999999999999999
Q ss_pred EEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCC-CCcccCccccCCCcccCCCcchHHH
Q 002188 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSINGVDDAEQ 399 (955)
Q Consensus 321 l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 399 (955)
|+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++|+.|+| .++.+|+||+++. ..++++||+++
T Consensus 249 i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~~~dD~~~ 327 (837)
T 1kk8_A 249 IHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVDNIDDVEE 327 (837)
T ss_dssp EEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBTTBCHHHH
T ss_pred EEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccCCcChHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899999999975 67899999999
Q ss_pred HHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCC
Q 002188 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN 479 (955)
Q Consensus 400 f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~ 479 (955)
|+++++||++|||+++|+..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++||++++.+++
T Consensus 328 f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~ 407 (837)
T 1kk8_A 328 FKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGT 407 (837)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC---
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCC
Confidence 99999999999999999999999999999999999998766667888999999999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHH
Q 002188 480 DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQ 559 (955)
Q Consensus 480 e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~ 559 (955)
|.+++++|++||.++||||||+||++||+|||++||++|... .....+||||||||||+|+.|||||||||||||||||
T Consensus 408 e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq 486 (837)
T 1kk8_A 408 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQ 486 (837)
T ss_dssp -CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHH
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccccccHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999853 3456899999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHcCCCceecccC-CcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHH-HHHhCCCCCCcCC
Q 002188 560 HFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGE 637 (955)
Q Consensus 560 ~f~~~~F~~Eq~eY~~EgI~~~~i~f~-dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl-~~~~~~~~~f~~~ 637 (955)
+||+|+|+.||+||.+|||+|+.|+|. ||++||||||+ |.|||++|||||++|++||.+|++|| .+++++|++|.++
T Consensus 487 ~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~~p 565 (837)
T 1kk8_A 487 FFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKP 565 (837)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECC
T ss_pred HHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCCCcCccCC
Confidence 999999999999999999999999995 99999999998 89999999999999999999999996 4677899999765
Q ss_pred C--------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCC
Q 002188 638 R--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGAD 708 (955)
Q Consensus 638 ~--------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~ 708 (955)
+ ..+|+|+||||+|+|+++||||||+|.|++|++++|++|++++ ..+|...... ++ .+. +..+..
T Consensus 566 ~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~-~g---~~~--~~k~~~ 639 (837)
T 1kk8_A 566 GKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEP-AG---GGK--KKKGKS 639 (837)
T ss_dssp CSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC---------------------
T ss_pred CccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccccc-cC---CCC--CCCCCC
Confidence 4 5699999999999999999999999999999999999999886 5688643210 00 010 111112
Q ss_pred CCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHH
Q 002188 709 SQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARR 788 (955)
Q Consensus 709 ~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~R 788 (955)
...+||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|++|++|
T Consensus 640 ~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~R 719 (837)
T 1kk8_A 640 SAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQR 719 (837)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccC--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccccchhhhhhhhhcchhhHhhhh
Q 002188 789 YGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKE 866 (955)
Q Consensus 789 Y~~L~~~~~~~--~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQa~~Rg~laRk~~~~ 866 (955)
|++|.+...+. .|+++.|+.||..+++++++|++|+||||||.+++..||++|+..+..
T Consensus 720 Y~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~------------------- 780 (837)
T 1kk8_A 720 YSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSK------------------- 780 (837)
T ss_dssp HGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHH-------------------
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHh-------------------
Confidence 99999987663 489999999999999999999999999999999999999988755533
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002188 867 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKN 915 (955)
Q Consensus 867 ~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~ 915 (955)
.++.||++||||++|++|.+++.++.||++||++||+|++|+.|..
T Consensus 781 ---~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w 826 (837)
T 1kk8_A 781 ---IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW 826 (837)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 3556666666666777776666566677777777777777776544
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.1e-206 Score=1863.80 Aligned_cols=752 Identities=43% Similarity=0.725 Sum_probs=685.0
Q ss_pred ccCcEEEEecCCCCEEeEEEEEe---cCCeeEEEcCCCcEEEEeC----CCccc-CCCCcCCCccccccCcCcCchhHHH
Q 002188 117 KKKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVLY 188 (955)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~l~E~siL~ 188 (955)
.+|.+||+|+++++|..|+|++. +++.++|.+++|++.+|+. +++.| +||+.++++|||+.|++|||++||+
T Consensus 8 ~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~ 87 (795)
T 1w7j_A 8 TKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLH 87 (795)
T ss_dssp CTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHHH
T ss_pred ccCCEEEEECCCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHHH
Confidence 45679999999999999999973 3456889999999998887 45777 6999999999999999999999999
Q ss_pred HHHHHh-hcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCC
Q 002188 189 NLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGA 265 (955)
Q Consensus 189 ~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGA 265 (955)
||+.|| .++.||||+|++|||||||+++|+|++++++.|+++... ||||||||++||++|+++++||||||||||||
T Consensus 88 nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGA 167 (795)
T 1w7j_A 88 NLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 167 (795)
T ss_dssp HHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTS
T ss_pred HHHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCC
Confidence 999999 999999999999999999999999999999999998754 89999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCCe
Q 002188 266 GKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342 (955)
Q Consensus 266 GKTe~~K~il~yL~~~~~~~---~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKs 342 (955)
||||++|+||+||+++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++||||||
T Consensus 168 GKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKS 247 (795)
T 1w7j_A 168 GKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKS 247 (795)
T ss_dssp SHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGG
T ss_pred CcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccc
Confidence 99999999999999998764 799999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHHHHHH
Q 002188 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422 (955)
Q Consensus 343 RVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~i~~ 422 (955)
|||.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+++++||++|||+++|+..||+
T Consensus 248 RVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ 327 (795)
T 1w7j_A 248 RVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFR 327 (795)
T ss_dssp GGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeeEEEeCCCCcccc-CChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHHHHHHH
Q 002188 423 MLAAVLWLGNVSFTVIDNENHVEP-VADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 501 (955)
Q Consensus 423 ilaAILhLGni~F~~~~~~~~~~~-~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalak~ 501 (955)
|||||||||||+|...+++ .+.+ .+++.++.||.||||++++|.++|++|++.+++|.++++++++||.++||||||+
T Consensus 328 ilaaILhLGNi~F~~~~~~-~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~ 406 (795)
T 1w7j_A 328 ILAGILHLGNVEFASRDSD-SCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKH 406 (795)
T ss_dssp HHHHHHHHHTCCCEEEETT-EEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCceEeecCCc-ceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876553 3444 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCce
Q 002188 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 581 (955)
Q Consensus 502 LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~ 581 (955)
||++||+|||++||++|.... ....+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+
T Consensus 407 lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~ 485 (795)
T 1w7j_A 407 IYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT 485 (795)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999998754 3468999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCCcCCC--CCCcEEEcccccceeccchh
Q 002188 582 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGF 658 (955)
Q Consensus 582 ~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~-~~~~~f~~~~--~~~F~I~HyAG~V~Y~~~gf 658 (955)
.|+|.||++||||||+| .|||+||||||++|++||.+|++||++++ ++|++|.+++ ..+|+|+||||+|+|+++||
T Consensus 486 ~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gf 564 (795)
T 1w7j_A 486 LIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGF 564 (795)
T ss_dssp GCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTH
T ss_pred ccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhH
Confidence 99999999999999997 99999999999999999999999999988 9999998775 67999999999999999999
Q ss_pred hhhccccchHHHHHHHhhcC-cch-hHHhhccccccC-CC-----------CccCCCc--cCCCCCCCCccHHHHHHHHH
Q 002188 659 LEKNRDLLHLDSIELLSSCS-CHL-PQIFASNMLSQS-NK-----------PVVGPLY--KAGGADSQKLSVATKFKGQL 722 (955)
Q Consensus 659 leKN~D~l~~d~~~ll~~S~-~~l-~~lf~~~~~~~~-~~-----------~~~~~~~--~~~~~~~~~~tv~~~f~~~L 722 (955)
||||+|.|++|++++|++|+ +++ ..+|.......+ .. ....+.+ .+++...+++||+++||.||
T Consensus 565 leKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL 644 (795)
T 1w7j_A 565 LEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSL 644 (795)
T ss_dssp HHHHHCCCCHHHHHHHHTCSSCSHHHHTTC---------------------------------------CCHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHhccccHHHHHHhccccccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHH
Confidence 99999999999999999999 875 567754321100 00 0000000 00122345689999999999
Q ss_pred HHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccCCCh
Q 002188 723 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 802 (955)
Q Consensus 723 ~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 802 (955)
+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|++...+..|+
T Consensus 645 ~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~ 724 (795)
T 1w7j_A 645 HLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDR 724 (795)
T ss_dssp HHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCH
T ss_pred HHHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986655589
Q ss_pred HHHHHHHHHHcCCCCcceeecceeeeeeeccccccccccccccc-chhhhhhhhhcchhhHhhhhhhhhh
Q 002188 803 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGI 871 (955)
Q Consensus 803 ~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~-aav~IQa~~Rg~laRk~~~~~r~aa 871 (955)
++.|+.||..+++++++|++|+||||||.+.+..||++|+..+. .++.||++||||++|++|+++|+++
T Consensus 725 k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987664 4567777777777777777776654
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.3e-207 Score=1910.08 Aligned_cols=788 Identities=35% Similarity=0.586 Sum_probs=703.5
Q ss_pred cCcEEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHHHHHHhh
Q 002188 118 KKLQSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYK 195 (955)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~ 195 (955)
+|.+||+||++++|.+|+|++..+++++|.+. +|++++++.+++.|+||+..+++|||+.|++|||++|||||+.||.
T Consensus 3 ~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry~ 82 (1052)
T 4anj_A 3 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYS 82 (1052)
T ss_dssp -CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHHc
Confidence 56789999999999999999999999888754 6788999999999999999999999999999999999999999999
Q ss_pred cCcceeecCCeeEeecCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHH
Q 002188 196 QDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (955)
Q Consensus 196 ~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 272 (955)
++.||||+|++|||||||+++| ||++++++.|+++... ||||||||++||++|+++++||||||||||||||||++|
T Consensus 83 ~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 83 KDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp TTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 9999999999999999999998 9999999999998765 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCCeeeeecCCCC
Q 002188 273 IAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351 (955)
Q Consensus 273 ~il~yL~~~~~~~-~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gE 351 (955)
+||+||+.+++++ .++++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++|||||||||.|++||
T Consensus 163 ~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gE 242 (1052)
T 4anj_A 163 FVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 242 (1052)
T ss_dssp HHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTC
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCC
Confidence 9999999987654 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCHHhHhhcCCCCcccCccccCC--------------------------CcccCCCcchHHHHHHHHH
Q 002188 352 RAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQS--------------------------SCYSINGVDDAEQFRIVVE 405 (955)
Q Consensus 352 RNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~--------------------------~~~~~~~~dD~~~f~~~~~ 405 (955)
||||||||||+|+++++|++|+|.++++|+||+++ +|..++++||+++|.++++
T Consensus 243 RNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 243 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp CSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999985 3567889999999999999
Q ss_pred HhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCC---ccccCChhHHHHHHHhcCCCHHHHHHhhccceee-----e
Q 002188 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALSTRKMR-----V 477 (955)
Q Consensus 406 al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~---~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~-----~ 477 (955)
||++|||+++|+..||+|||||||||||+|.+.++.+ .+...+.+.++.||.||||++++|.++||++++. +
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~ 402 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGA 402 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC--------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeeccccc
Confidence 9999999999999999999999999999998654322 2455667889999999999999999999998874 5
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHH
Q 002188 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (955)
Q Consensus 478 ~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkL 557 (955)
++|.++++++++||.++||||||+||++||+|||++||.+|... ....+||||||||||+|+.|||||||||||||+|
T Consensus 403 ~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkL 480 (1052)
T 4anj_A 403 KGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 480 (1052)
T ss_dssp -----CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999864 3467999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCC
Q 002188 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 637 (955)
Q Consensus 558 Q~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~ 637 (955)
||+||+|+|+.||+||.+|||+|+.|+|.||++|||||++||.|||++|||||++|++||++|++||++.+++|++|..+
T Consensus 481 Qq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 560 (1052)
T 4anj_A 481 QQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIP 560 (1052)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECG
T ss_pred HHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred C------------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccC
Q 002188 638 R------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKA 704 (955)
Q Consensus 638 ~------------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~ 704 (955)
+ ...|+|+||||+|+|+++||||||+|.|++|++++|++|++++ ..+|......... .+.
T Consensus 561 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~-------~~~ 633 (1052)
T 4anj_A 561 RKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKD-------TKQ 633 (1052)
T ss_dssp GGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------
T ss_pred cccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhcccccccc-------ccC
Confidence 2 2469999999999999999999999999999999999999885 5678543211110 011
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHH
Q 002188 705 GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQK 784 (955)
Q Consensus 705 ~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~e 784 (955)
+....+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+
T Consensus 634 ~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~e 713 (1052)
T 4anj_A 634 KAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 713 (1052)
T ss_dssp ------CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHH
Confidence 11233468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccccchhhhhhhhhcchhhHhh
Q 002188 785 FARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCL 864 (955)
Q Consensus 785 F~~RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQa~~Rg~laRk~~ 864 (955)
|++||++|+|...+..|+++.|+.||+.+++++++|++|+||||||.++++.||++|+..+..++.+|..+|||++|++|
T Consensus 714 F~~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~ 793 (1052)
T 4anj_A 714 LYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRW 793 (1052)
T ss_dssp HHHHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999887766655568999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHH
Q 002188 865 KELRRGIVALQSFIRGEKIRKEYALVLQ-RHRAAVVIQRQIKSRVARQKLK 914 (955)
Q Consensus 865 ~~~r~aav~IQs~~Rg~~aRr~~~~l~~-~~~AAi~IQ~~~R~~~~Rr~y~ 914 (955)
++++++++.||..+|+++.|+.+..... ...++.-+++.||++..|++|.
T Consensus 794 ~k~~~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~~~r~~~ 844 (1052)
T 4anj_A 794 KKVQWCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDVNGHKFS 844 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHHHhhhhh
Confidence 9999999999999998877665432111 1123334455555555555553
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.9e-204 Score=1836.35 Aligned_cols=746 Identities=39% Similarity=0.669 Sum_probs=660.2
Q ss_pred ccCCCCCCccccCccccccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCCCCcCCC
Q 002188 92 AASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDG 171 (955)
Q Consensus 92 ~~~p~p~~~~~~~~~~w~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~ 171 (955)
.-.+-|++..+.++..-.++.+|..++ +||+|+|+++|..|+|++..+++++|.+++|++++|+.+++.++||+.+++
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~vWv~d~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~ 86 (783)
T 4db1_A 9 FGAAAPYLRKSEKERLEAQTRPFDLKK--DVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDK 86 (783)
T ss_dssp GGGGGGGTCCCHHHHHHHHHSCCCTTT--EEEEECSSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEECCCGGGTT
T ss_pred cCchhhHhccCHHHHHHhhccCCcCCC--EEEEECCCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccCCCCccCC
Confidence 334557788777777778899999887 999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHH
Q 002188 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (955)
Q Consensus 172 ~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~ 249 (955)
+|||+.|++|||++|||||+.||.++.||||+|++|||||||+++|+|++++++.|+++... ||||||||++||++|+
T Consensus 87 ~eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~ 166 (783)
T 4db1_A 87 IEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYML 166 (783)
T ss_dssp CSBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHH
T ss_pred cchhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988754 8999999999999999
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHhccCC------------CCchhhhhhhhHHHHhhcCcccCCCCCCCCccc
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGK 317 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~~------------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK 317 (955)
++++||||||||||||||||++|+||+||++++++ +.|+++|+++||||||||||||+||||||||||
T Consensus 167 ~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK 246 (783)
T 4db1_A 167 TDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGK 246 (783)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEE
T ss_pred hhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccce
Confidence 99999999999999999999999999999998743 358999999999999999999999999999999
Q ss_pred EEEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCC-CcccCccccCCCcccCCCcch
Q 002188 318 LIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDD 396 (955)
Q Consensus 318 ~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~-~~~~y~yL~~~~~~~~~~~dD 396 (955)
||+|+||.+|+|+||+|++|||||||||.|++||||||||||||+|+++++|+.|+|. ++.+|+||+++. ..++++||
T Consensus 247 ~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g~-~~~~~~dD 325 (783)
T 4db1_A 247 FIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGE-TTVASIDD 325 (783)
T ss_dssp EEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSSC-CCCTTCCH
T ss_pred eEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCCC-cccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999994 799999999865 67899999
Q ss_pred HHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceee
Q 002188 397 AEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMR 476 (955)
Q Consensus 397 ~~~f~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~ 476 (955)
+++|+.+++||++|||+++|+..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++||+|++.
T Consensus 326 ~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~ 405 (783)
T 4db1_A 326 AEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVK 405 (783)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEE
Confidence 99999999999999999999999999999999999999998776677888999999999999999999999999999999
Q ss_pred eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHH
Q 002188 477 VGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANER 556 (955)
Q Consensus 477 ~~~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEk 556 (955)
+++|.++++++++||.++||||||+||+|||+|||++||++|... .....+||||||||||+|+.||||||||||||||
T Consensus 406 ~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEk 484 (783)
T 4db1_A 406 VGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEK 484 (783)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHH
T ss_pred eCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999864 3346899999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHcCCCceecccC-CcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCC
Q 002188 557 LQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCF 634 (955)
Q Consensus 557 LQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~-dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~-~~~~~f 634 (955)
|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |.|||++|||||++|++||.+|++||++.+ ++|++|
T Consensus 485 LQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~~~~~~~~~f 563 (783)
T 4db1_A 485 LQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANF 563 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHHHHTTTCTTE
T ss_pred HHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999995 99999999997 899999999999999999999999998766 889999
Q ss_pred cCCC------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCC
Q 002188 635 RGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGA 707 (955)
Q Consensus 635 ~~~~------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~ 707 (955)
.+++ ..+|+|+||||+|+|+++|||+||+|.|++|++++|++|++.+ ..+|.......+ +. +....+...
T Consensus 564 ~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~--~~-~~~~~~~~~ 640 (783)
T 4db1_A 564 QKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADA--PI-EKGKGKAKK 640 (783)
T ss_dssp ECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC------------------
T ss_pred cCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccccc--cc-cCccCCCCc
Confidence 7654 3689999999999999999999999999999999999999885 578865432111 00 000000011
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHH
Q 002188 708 DSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAR 787 (955)
Q Consensus 708 ~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~ 787 (955)
.+..+||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 641 ~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~ 720 (783)
T 4db1_A 641 GSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQ 720 (783)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEEEC-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccCcHHHHHH
Confidence 22458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccC---CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccc
Q 002188 788 RYGFLLLESVAS---QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTL 845 (955)
Q Consensus 788 RY~~L~~~~~~~---~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l 845 (955)
||++|.|..++. .|+++.|+.||+.+++++++|++|+||||||.++++.||++|++++
T Consensus 721 RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l 781 (783)
T 4db1_A 721 RYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERL 781 (783)
T ss_dssp ---------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC----
T ss_pred HHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHh
Confidence 999999987653 3788999999999999999999999999999999999999998765
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=3.2e-201 Score=1863.44 Aligned_cols=789 Identities=37% Similarity=0.608 Sum_probs=720.0
Q ss_pred ccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcC-CCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHHHH
Q 002188 113 SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLP-EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLH 191 (955)
Q Consensus 113 ~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~-~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~L~ 191 (955)
+|..++ +||+++++++|.+|+|++..++.++|.+. +|++++|+.+++.++||+.++++|||+.|++|||++||+||+
T Consensus 4 ~~~~~~--~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~ 81 (995)
T 2ycu_A 4 EWTARR--LVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLR 81 (995)
T ss_dssp CCGGGC--EEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHH
T ss_pred cccCCC--eEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHH
Confidence 565554 89999999999999999999999999976 456899999999999999999999999999999999999999
Q ss_pred HHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhH
Q 002188 192 YRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (955)
Q Consensus 192 ~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe 269 (955)
.||..+.||||+|++|||||||+++|+|+++++..|+++... ||||||||++||++|+.+++||||||||||||||||
T Consensus 82 ~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe 161 (995)
T 2ycu_A 82 ERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTE 161 (995)
T ss_dssp HHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHH
T ss_pred HHHhcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchh
Confidence 999999999999999999999999999999999999998764 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC----------CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeec
Q 002188 270 TAKIAMQYLAALGGG----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (955)
Q Consensus 270 ~~K~il~yL~~~~~~----------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLL 339 (955)
++|+||+||++++++ +.|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|++|||
T Consensus 162 ~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLL 241 (995)
T 2ycu_A 162 NTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLL 241 (995)
T ss_dssp HHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECC
T ss_pred hHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEec
Confidence 999999999999764 3689999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHHH
Q 002188 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQES 419 (955)
Q Consensus 340 EKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~ 419 (955)
||||||.|++||||||||||||+|+++++|+.|+|.++.+|+||++++ ..+++ ||+++|++++.||++|||+++|+..
T Consensus 242 EksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~ 319 (995)
T 2ycu_A 242 EKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIIS 319 (995)
T ss_dssp CGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999987 47788 9999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHHHHH
Q 002188 420 VFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 499 (955)
Q Consensus 420 i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdala 499 (955)
||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|+|.+++++|++||.++|||||
T Consensus 320 i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdala 399 (995)
T 2ycu_A 320 MLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALA 399 (995)
T ss_dssp HHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHH
Confidence 99999999999999999876666788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCC
Q 002188 500 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 579 (955)
Q Consensus 500 k~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~ 579 (955)
|+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+
T Consensus 400 k~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~ 479 (995)
T 2ycu_A 400 KATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIP 479 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCC
Confidence 99999999999999999998644325689999999999999999999999999999999999999999999999999999
Q ss_pred ceeccc-CCcHhHHHhhhc--CCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC----CCCcEEEcccccce
Q 002188 580 WAKVDF-EDNKDCLNLFEK--KPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVI 652 (955)
Q Consensus 580 ~~~i~f-~dN~~~ldlie~--kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~----~~~F~I~HyAG~V~ 652 (955)
|+.|+| .||++|||||++ +|.|||++|||||++|++||.+|++||...+++|++|.+++ ..+|+|+||||+|+
T Consensus 480 w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~ 559 (995)
T 2ycu_A 480 WTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVD 559 (995)
T ss_dssp CCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEE
T ss_pred ccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCcc
Confidence 999999 599999999998 48999999999999999999999999999999999998765 47999999999999
Q ss_pred eccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccC--CCc-cCCCCCCCCccHHHHHHHHHHHHHHH
Q 002188 653 YDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVG--PLY-KAGGADSQKLSVATKFKGQLFQLMQR 728 (955)
Q Consensus 653 Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~--~~~-~~~~~~~~~~tv~~~f~~~L~~Lm~~ 728 (955)
|+++|||+||+|+|++|++++|++|++++ ..+|.......+.....+ +.. .++....+.+||+++||.||+.||++
T Consensus 560 Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~ 639 (995)
T 2ycu_A 560 YKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMAT 639 (995)
T ss_dssp ECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccccHHHHHHHHhCcHHHHHHHhhcccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886 568865321100000000 000 00111234689999999999999999
Q ss_pred HhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccC--CChHHHH
Q 002188 729 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVS 806 (955)
Q Consensus 729 L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~--~d~~~~~ 806 (955)
|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|.+..++. .|+++.|
T Consensus 640 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~ 719 (995)
T 2ycu_A 640 LSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQAC 719 (995)
T ss_dssp HHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSC
T ss_pred HHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887653 4788899
Q ss_pred HHHHHHcCCCCcceeecceeeeeeecccccccccccccccc------hhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHH
Q 002188 807 VAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG------ILRVQSCFRGHQARLCLKELRRGIVALQSFIRG 880 (955)
Q Consensus 807 ~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a------av~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg 880 (955)
+.||..+++++++|++|+||||||.+++..||++|+..+.. +..+++|+|+..++..+++.+.++..||++||+
T Consensus 720 ~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~ 799 (995)
T 2ycu_A 720 EKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNA 799 (995)
T ss_dssp CCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999887753 446788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002188 881 EKIRKEYALVLQRHRAAVVIQRQIKS 906 (955)
Q Consensus 881 ~~aRr~~~~l~~~~~AAi~IQ~~~R~ 906 (955)
+..++...+... ......||..++.
T Consensus 800 f~~fr~~ekpp~-~~ek~rLeal~~~ 824 (995)
T 2ycu_A 800 HKEYKKTEKPPK-GQEVSELEAIYNS 824 (995)
T ss_dssp HTTHHHHTHHHH-HHHHHHHCSSSCC
T ss_pred HHHHHHHhccch-HHHHHHHHHHHHH
Confidence 988887754321 1223466666653
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=6e-201 Score=1909.63 Aligned_cols=774 Identities=38% Similarity=0.643 Sum_probs=706.8
Q ss_pred cccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEc-CCCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHHH
Q 002188 112 TSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNL 190 (955)
Q Consensus 112 ~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~L 190 (955)
.+|..+ .+||+|+++++|.+|+|++..++.++|.+ ++|++++|+.+++.++||+.++++|||+.|++|||++|||||
T Consensus 26 ~~~~~~--~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~~~~Dl~~l~~l~e~~vl~~L 103 (1184)
T 1i84_S 26 ADWSAK--KLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNL 103 (1184)
T ss_dssp HHTTCT--TEEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGTTCSBTTSSSCCCTTHHHHHH
T ss_pred CCcccC--CeEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCccccccchhhhhccccHHHHHHHH
Confidence 355544 49999999999999999999999999985 588899999999999999999999999999999999999999
Q ss_pred HHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChh
Q 002188 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKT 268 (955)
Q Consensus 191 ~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKT 268 (955)
+.||..+.||||+|+||||||||+++|+|+++++..|+++... ||||||||+.||++|+.+++|||||||||||||||
T Consensus 104 ~~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKT 183 (1184)
T 1i84_S 104 RERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKT 183 (1184)
T ss_dssp HHHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTT
T ss_pred HHHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCcc
Confidence 9999999999999999999999999999999999999998765 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCC-----------------CCchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeec
Q 002188 269 ETAKIAMQYLAALGGG-----------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISG 331 (955)
Q Consensus 269 e~~K~il~yL~~~~~~-----------------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~G 331 (955)
|+||+||+||++++++ +.|+++|+++||||||||||||++|||||||||||+|+||.+|.|+|
T Consensus 184 e~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~g 263 (1184)
T 1i84_S 184 ENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVG 263 (1184)
T ss_dssp HHHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEee
Confidence 9999999999999764 36889999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcc
Q 002188 332 ANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVH 411 (955)
Q Consensus 332 a~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG 411 (955)
|+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+||+++. ..++++||+++|..++.||++||
T Consensus 264 a~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~~-~~~~~~~d~~~f~~~~~a~~~lg 342 (1184)
T 1i84_S 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMG 342 (1184)
T ss_dssp EEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTSS-CCCTTCCHHHHHHHHHHHHHHHT
T ss_pred eEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCCC-cCCCCCChHHHHHHHHHHHHhce
Confidence 99999999999999999999999999999999999999999999999999999875 58899999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHH
Q 002188 412 VSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQA 491 (955)
Q Consensus 412 ~s~~e~~~i~~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A 491 (955)
|+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|+|.+++++|++||
T Consensus 343 ~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a 422 (1184)
T 1i84_S 343 FTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHH
T ss_pred eCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHH
Confidence 99999999999999999999999987666667888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHH
Q 002188 492 TDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQE 571 (955)
Q Consensus 492 ~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~ 571 (955)
.++||||||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+|||+||+|||+.||+
T Consensus 423 ~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ 502 (1184)
T 1i84_S 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQE 502 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999986533456899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceecccC-CcHhHHHhhhcC--CCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC----CCCcEE
Q 002188 572 EYIQDGIDWAKVDFE-DNKDCLNLFEKK--PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER----DKSFTV 644 (955)
Q Consensus 572 eY~~EgI~~~~i~f~-dN~~~ldlie~k--p~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~----~~~F~I 644 (955)
||.+|||+|+.|+|. ||++|||||+++ |.|||+||||||++|++||.+|++||++++++|++|.+++ ..+|+|
T Consensus 503 ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i 582 (1184)
T 1i84_S 503 EYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCI 582 (1184)
T ss_dssp HHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEE
T ss_pred HHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEE
Confidence 999999999999995 999999999973 3499999999999999999999999999999999998764 578999
Q ss_pred EcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCcc-----CCCCCCCCccHHHHH
Q 002188 645 SHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYK-----AGGADSQKLSVATKF 718 (955)
Q Consensus 645 ~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~-----~~~~~~~~~tv~~~f 718 (955)
+||||+|+|+++|||+||+|+|+++++++|.+|++++ ..+|.......+.....++... +....+..+||+++|
T Consensus 583 ~Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f 662 (1184)
T 1i84_S 583 LHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLY 662 (1184)
T ss_dssp ECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTCCCC---------------------CCCHHHHH
T ss_pred ECCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhccccccccccccccccccccCccccccCCCCCcHHHHH
Confidence 9999999999999999999999999999999999886 5688653311110000000000 011123458999999
Q ss_pred HHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhcccccccc
Q 002188 719 KGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA 798 (955)
Q Consensus 719 ~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~ 798 (955)
+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.|...+
T Consensus 663 ~~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~ 742 (1184)
T 1i84_S 663 KEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIP 742 (1184)
T ss_dssp HHHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSC
T ss_pred HHHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccccHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred C--CChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccccc-hhhhhhhhhcchhhHhhhhhh---hhhH
Q 002188 799 S--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELR---RGIV 872 (955)
Q Consensus 799 ~--~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a-av~IQa~~Rg~laRk~~~~~r---~aav 872 (955)
. .|++..|..||..++++++.|++|+||||||.+.+..||..|...+.. ++.||++||||++|++|.+++ .|++
T Consensus 743 ~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~ 822 (1184)
T 1i84_S 743 KGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIF 822 (1184)
T ss_dssp SSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 488999999999999999999999999999999999999999887754 567899999999998888764 5788
Q ss_pred HHHHHHHHHHHHHHHH
Q 002188 873 ALQSFIRGEKIRKEYA 888 (955)
Q Consensus 873 ~IQs~~Rg~~aRr~~~ 888 (955)
+||+.||+|++|+.+.
T Consensus 823 ~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 823 CIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhhhH
Confidence 8888888888887654
No 8
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=6e-201 Score=1800.25 Aligned_cols=716 Identities=44% Similarity=0.744 Sum_probs=632.8
Q ss_pred cCcEEEEecC---CCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHHHHHHh
Q 002188 118 KKLQSWFQLP---NGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRY 194 (955)
Q Consensus 118 ~~~~vw~~~~---~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry 194 (955)
.+.+||++++ +++|..|+|++..+++++|..++|++++|+.+++.++||+.++++|||+.|++|||++||+||+.||
T Consensus 31 ~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry 110 (770)
T 1w9i_A 31 DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRY 110 (770)
T ss_dssp -CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEECCCGGGTTCSBGGGCSCCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhccccCcccccchhhhhhhccCCHHHHHHHHHHHH
Confidence 5669999999 8999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHH
Q 002188 195 KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (955)
Q Consensus 195 ~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 272 (955)
.++.||||+|++|||||||+++|+|++++++.|+++... ||||||||++||++|+++++||||||||||||||||++|
T Consensus 111 ~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 111 NQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred hcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 999999999999999999999999999999999998764 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCCeeeee
Q 002188 273 IAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQ 346 (955)
Q Consensus 273 ~il~yL~~~~~~~------~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~ 346 (955)
+||+||+++++++ .++++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++|||||||||.
T Consensus 191 ~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~ 270 (770)
T 1w9i_A 191 KVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVF 270 (770)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTC
T ss_pred HHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeec
Confidence 9999999998753 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCcc-ccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHHHHHHHHH
Q 002188 347 CAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKY-LRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLA 425 (955)
Q Consensus 347 q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~y-L~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~i~~ila 425 (955)
|++||||||||||||+|+++++|++|+|.++.+|+| |++ +|..++++||+++|+++++||++|||+++|+..||+|||
T Consensus 271 q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~-g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ila 349 (770)
T 1w9i_A 271 QSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIA 349 (770)
T ss_dssp CCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSS-SCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccC-CccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 776 467889999999999999999999999999999999999
Q ss_pred HHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHHHHHHHHHHH
Q 002188 426 AVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYAC 505 (955)
Q Consensus 426 AILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalak~LY~~ 505 (955)
||||||||+|. .++++.+.+.+.+.++.||.||||++++|.++|++|++.+++|.++++++++||.++||||||+||+|
T Consensus 350 aILhLGNi~F~-~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~r 428 (770)
T 1w9i_A 350 GILHLGNIKFE-KGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428 (770)
T ss_dssp HHHHHHTCCCE-ECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCceEe-cCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 45556788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCceeccc
Q 002188 506 LFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF 585 (955)
Q Consensus 506 LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f 585 (955)
||+|||++||++|..... ..+||||||||||+|+.|||||||||||||||||+||+|+|+.||+||.+|||+|+.|+|
T Consensus 429 LF~wlV~~IN~~l~~~~~--~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f 506 (770)
T 1w9i_A 429 LFLWLVKKINNVLCQERK--AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDF 506 (770)
T ss_dssp HHHHHHHHHHHHHCCSCC--SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCG
T ss_pred HHHHHHHHHHHHhcCCCC--CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeecc
Confidence 999999999999986433 789999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcHhHHHhhhcC-CCccccccccccCCCCCChHHHHHHH-HHHhCCCCCCcCCC--CCCcEEEcccccceeccchhhh
Q 002188 586 E-DNKDCLNLFEKK-PLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLE 660 (955)
Q Consensus 586 ~-dN~~~ldlie~k-p~Gil~lLDee~~~p~~td~~fl~kl-~~~~~~~~~f~~~~--~~~F~I~HyAG~V~Y~~~gfle 660 (955)
. ||++|||||+++ |.|||++|||||++|++||.+|++|| .+++++|++|.+++ ..+|+|+||||+|+|+++||++
T Consensus 507 ~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 586 (770)
T 1w9i_A 507 GLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLE 586 (770)
T ss_dssp GGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHH
T ss_pred ccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhh
Confidence 5 999999999984 99999999999999999999999996 45678999998765 3799999999999999999999
Q ss_pred hccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEe
Q 002188 661 KNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRC 739 (955)
Q Consensus 661 KN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRC 739 (955)
||+|.|++|++++|++|++++ ..+|..... . +. +......+||+++||.||+.||++|++|+||||||
T Consensus 587 KNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~-~------~~----~~k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRC 655 (770)
T 1w9i_A 587 KNKDPLQQDLELCFKDSSDNVVTKLFNDPNI-A------SR----AKKGANFITVAAQYKEQLASLMATLETTNPHFVRC 655 (770)
T ss_dssp HHHCCCCHHHHHHHHTCSSTTHHHHHHCHHH-H------CC----CEETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred hccCcccHHHHHHHHhchHHHHHHHhhccCC-C------CC----CCCCCCCcchhHHHHHHHHHHHHHHHhcCceeeee
Confidence 999999999999999999875 678864320 0 10 00112358999999999999999999999999999
Q ss_pred ccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccC--CChHHHHHHHHHHcCCCC
Q 002188 740 IKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILP 817 (955)
Q Consensus 740 IkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~iL~~~~~~~ 817 (955)
||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|.+ .++. .|+++.|+.||+.+++++
T Consensus 656 IkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~ 734 (770)
T 1w9i_A 656 IIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDP 734 (770)
T ss_dssp ECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-----------------------------------
T ss_pred ecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999998 5543 478899999999999999
Q ss_pred cceeecceeeeeeecccccccccccccccchh
Q 002188 818 EMYQVGYTKLFFRAGQIGMLEDTRNRTLHGIL 849 (955)
Q Consensus 818 ~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav 849 (955)
++|++|+||||||.+++..||++|++++..++
T Consensus 735 ~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~ 766 (770)
T 1w9i_A 735 EQFRFGITKIFFRAGQLARIEEARELRGDYKD 766 (770)
T ss_dssp -CCCCCSSEEEECTTTTTC-------------
T ss_pred ccEEeCCeeEEecccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998886543
No 9
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=1.7e-200 Score=1809.79 Aligned_cols=730 Identities=36% Similarity=0.622 Sum_probs=661.5
Q ss_pred EEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHHHHHHhhcCc
Q 002188 121 QSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDM 198 (955)
Q Consensus 121 ~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~ 198 (955)
+||+++++++|..|+|++..++.++|.+. +|++++++.+++.|+||+..+++|||+.|++|||++||+||+.||.++.
T Consensus 2 ~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~ 81 (784)
T 2v26_A 2 PVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDR 81 (784)
T ss_dssp CEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcCc
Confidence 59999999999999999999999998864 6889999999999999999999999999999999999999999999999
Q ss_pred ceeecCCeeEeecCCCCC-CCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 199 IYTKAGPVLVAINPFKKV-PLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 199 iYT~~G~iLiavNP~k~l-~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
||||+|++|||||||+++ |+|++++++.|+++... ||||||||++||++|+++++||||||||||||||||++|+||
T Consensus 82 IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 82 IYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp CEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 999999999999999999 69999999999998765 899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCCeeeeecCCCCcch
Q 002188 276 QYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAY 354 (955)
Q Consensus 276 ~yL~~~~~~~-~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNf 354 (955)
+||+.+++++ .|+++|+++||||||||||||+||||||||||||+|+||.+|+|+||+|++|||||||||.|++|||||
T Consensus 162 ~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 241 (784)
T 2v26_A 162 RYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNY 241 (784)
T ss_dssp HHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSB
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcc
Confidence 9999987654 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHhHhhcCCCCcccCccccCCCc--------------------------ccCCCcchHHHHHHHHHHhh
Q 002188 355 HIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSC--------------------------YSINGVDDAEQFRIVVEALD 408 (955)
Q Consensus 355 HIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~--------------------------~~~~~~dD~~~f~~~~~al~ 408 (955)
|||||||+|+++++|++|+|.++.+|+||+++.+ ..++++||+++|+++++||+
T Consensus 242 HIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~ 321 (784)
T 2v26_A 242 HIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMK 321 (784)
T ss_dssp HHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 23567999999999999999
Q ss_pred hcccChhhHHHHHHHHHHHHHhcCeeEEEeCC-CCcccc--CChhHHHHHHHhcCCCHHHHHHhhccceee-----eCCc
Q 002188 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN-ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMR-----VGND 480 (955)
Q Consensus 409 ~lG~s~~e~~~i~~ilaAILhLGni~F~~~~~-~~~~~~--~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~-----~~~e 480 (955)
+|||+++|+..||+|||||||||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++||+|++. ++||
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge 401 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGT 401 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC----------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCC
Confidence 99999999999999999999999999997433 233333 457899999999999999999999999997 6789
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHH
Q 002188 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (955)
Q Consensus 481 ~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~ 560 (955)
.++++++++||.++||||||+||++||+|||++||++|... ....+||||||||||+|+.|||||||||||||||||+
T Consensus 402 ~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~ 479 (784)
T 2v26_A 402 VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 479 (784)
T ss_dssp -CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999754 3467999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCCcCCC--
Q 002188 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER-- 638 (955)
Q Consensus 561 f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~~f~~~~-- 638 (955)
||+|+|+.||+||.+|||+|+.|+|.||++|||||++||.|||+||||||++|++||.+|++||++++++|++|..++
T Consensus 480 F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 480 FNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp HHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred HHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998885442
Q ss_pred ----------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCC
Q 002188 639 ----------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGA 707 (955)
Q Consensus 639 ----------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~ 707 (955)
..+|+|+||||+|+|+++||||||+|.|+++++++|++|++++ ..+|...... +.. .+.+..
T Consensus 560 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~-~~~------~~~~~~ 632 (784)
T 2v26_A 560 KLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNN-NKD------TKQKAG 632 (784)
T ss_dssp SSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC----------------------
T ss_pred cccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHccccccc-ccC------cccCCC
Confidence 2489999999999999999999999999999999999999885 5688653211 000 011111
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHH
Q 002188 708 DSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAR 787 (955)
Q Consensus 708 ~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~ 787 (955)
.....||+++||.||++||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 633 ~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~ 712 (784)
T 2v26_A 633 KLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 712 (784)
T ss_dssp -CCCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCChHHHHHHHHHHcCCCCcceeecceeeeeeecccccccccccccccchhhhhhhhhcch
Q 002188 788 RYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQ 859 (955)
Q Consensus 788 RY~~L~~~~~~~~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQa~~Rg~l 859 (955)
||++|+|...+..|+++.|+.||..+++++++|++|+||||||.++++.||.++......+..|++.+|+|+
T Consensus 713 RY~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 713 MYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp HHGGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHhhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 999999987777799999999999999999999999999999999999999987665555555667777764
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=9.3e-198 Score=1829.65 Aligned_cols=754 Identities=43% Similarity=0.722 Sum_probs=700.1
Q ss_pred ccccccCcEEE---EecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCCCCcCCCccccccCcCcCchhHHHH
Q 002188 113 SYAGKKKLQSW---FQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189 (955)
Q Consensus 113 ~~~~~~~~~vw---~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~E~siL~~ 189 (955)
+|..+ .+|| +++++++|..|+|++..++.++|.+++|++++|+.+++.++||+.++++|||+.|++|||++||+|
T Consensus 28 ~~~~~--~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~n 105 (1010)
T 1g8x_A 28 TVSDK--RYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105 (1010)
T ss_dssp CCCCC--CEEEECSSTTCTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTCCBCCCGGGTTCSBGGGCSSCCHHHHHHH
T ss_pred chhcC--CceeCccCcCcccCeeEEEEEEecCCeEEEEecCCcEEEecHHhccccCcchhcchhhhhhhhcccHHHHHHH
Confidence 45544 4899 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCCh
Q 002188 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGK 267 (955)
Q Consensus 190 L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGK 267 (955)
|+.||..+.||||+|++|||||||+++|+|+++++..|+++... ||||||||++||++|+.+++||||||||||||||
T Consensus 106 L~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGK 185 (1010)
T 1g8x_A 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGK 185 (1010)
T ss_dssp HHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSH
T ss_pred HHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCc
Confidence 99999999999999999999999999999999999999998765 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEEEEcCCCCeeceeeeeeecCC
Q 002188 268 TETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEK 341 (955)
Q Consensus 268 Te~~K~il~yL~~~~~~~------~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEK 341 (955)
||++|+||+||+++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||||
T Consensus 186 Te~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEk 265 (1010)
T 1g8x_A 186 TENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEK 265 (1010)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCG
T ss_pred chHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCC
Confidence 999999999999997643 68999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCCCcccCccccCCCcccCCCcchHHHHHHHHHHhhhcccChhhHHHHH
Q 002188 342 SRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421 (955)
Q Consensus 342 sRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~s~~e~~~i~ 421 (955)
||||.|++||||||||||||+|+++++|+.|+|.++.+|+||++++|..++++||+++|+.++.||++|||+++|+..||
T Consensus 266 sRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~ 345 (1010)
T 1g8x_A 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIF 345 (1010)
T ss_dssp GGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeeEEEeCCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceeeeCCceEEecCCHHHHHHHHHHHHHH
Q 002188 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 501 (955)
Q Consensus 422 ~ilaAILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalak~ 501 (955)
+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++||++++.+++|.+++++|++||.++||||||+
T Consensus 346 ~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~ 424 (1010)
T 1g8x_A 346 KIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKA 424 (1010)
T ss_dssp HHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccceEEecCC-CccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999999987654 667888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHcCCCce
Q 002188 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 581 (955)
Q Consensus 502 LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~ 581 (955)
||++||+|||++||.+|.... ...+||||||||||+|+.|||||||||||||||||+||+++|+.||+||.+|||+|+
T Consensus 425 lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~ 502 (1010)
T 1g8x_A 425 LYGRLFLWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWT 502 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCcc
Confidence 999999999999999998643 568999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC-CcHhHHHhhhc-CCCccccccccccCCCCCChHHHHHHHHHHhC-CCCCCcCCC--CCCcEEEcccccceeccc
Q 002188 582 KVDFE-DNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN-SNPCFRGER--DKSFTVSHYAGEVIYDTT 656 (955)
Q Consensus 582 ~i~f~-dN~~~ldlie~-kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~-~~~~f~~~~--~~~F~I~HyAG~V~Y~~~ 656 (955)
.|+|. ||++|||||++ +|.|||++|||||++|++||.+|++|+.++++ +|++|.+++ ..+|+|+||||+|+|+++
T Consensus 503 ~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~ 582 (1010)
T 1g8x_A 503 FIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQ 582 (1010)
T ss_dssp CCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECT
T ss_pred ccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeec
Confidence 99995 99999999998 59999999999999999999999999999999 999998765 369999999999999999
Q ss_pred hhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCe
Q 002188 657 GFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPH 735 (955)
Q Consensus 657 gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~ph 735 (955)
|||+||+|+|++|++++|++|++++ ..+|.... .+ +. ++.....+||+++||.||+.||++|++|+||
T Consensus 583 gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~--~~-----~~----~~k~~~~~tv~~~fk~sL~~Lm~~L~~t~ph 651 (1010)
T 1g8x_A 583 DWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN--IA-----SR----AKKGANFITVAAQYKEQLASLMATLETTNPH 651 (1010)
T ss_dssp THHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHH--HH-----SC----CCCSSSCCCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CccccccccccHHHHHHHHhCcHHHHHHHhcccc--cc-----cC----CCCCCCCCchHHHHHHHHHHHHHHHHhcCCe
Confidence 9999999999999999999999885 56886432 00 00 1112345899999999999999999999999
Q ss_pred eEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChHHHHHHhhccccccccC--CChHHHHHHHHHHc
Q 002188 736 FIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQF 813 (955)
Q Consensus 736 fIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~iL~~~ 813 (955)
||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++||++|.|. ++. .|+++.|+.||..+
T Consensus 652 fVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~-~~~~~~d~~~~~~~ll~~~ 730 (1010)
T 1g8x_A 652 FVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPN-VPRDAEDSQKATDAVLKHL 730 (1010)
T ss_dssp EEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHHGGGSTT-CCTTCSCHHHHHHHHHHHT
T ss_pred eeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHHHHhCCC-CCcCCCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999987 543 48899999999999
Q ss_pred CCCCcceeecceeeeeeecccccccccccccccc-hhhhhhhhhcch---------hhHhhhhhhhhhHHHHHHHHHHHH
Q 002188 814 NILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQ---------ARLCLKELRRGIVALQSFIRGEKI 883 (955)
Q Consensus 814 ~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a-av~IQa~~Rg~l---------aRk~~~~~r~aav~IQs~~Rg~~a 883 (955)
++++++|++|+||||||.+++..||++|...+.. ++.||...++.. ++...+....++..||++++++..
T Consensus 731 ~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~ 810 (1010)
T 1g8x_A 731 NIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKE 810 (1010)
T ss_dssp TCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHH
T ss_pred CCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988865 445665444433 222233334578889999887644
No 11
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-194 Score=1736.83 Aligned_cols=662 Identities=39% Similarity=0.665 Sum_probs=608.3
Q ss_pred CCCccccccCcCcCchhHHHHHHHHhhcCcceeecCCeeEeecCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 002188 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (955)
Q Consensus 169 ~~~~~Dl~~L~~l~E~siL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~ 246 (955)
.+++|||+.|++|||++||+||+.||.++.||||+|++|||||||+++|+|++++++.|+++... ||||||||++||+
T Consensus 7 ~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~ 86 (697)
T 1lkx_A 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYR 86 (697)
T ss_dssp --CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHH
T ss_pred ccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998764 8999999999999
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhccC-CC----CchhhhhhhhHHHHhhcCcccCCCCCCCCcccEEEE
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-GS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~-~~----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l 321 (955)
+|+++++||||||||||||||||++|+||+||+++++ ++ .|+++|+++||||||||||||+||||||||||||+|
T Consensus 87 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i 166 (697)
T 1lkx_A 87 SMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEM 166 (697)
T ss_dssp HHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEE
T ss_pred HHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEE
Confidence 9999999999999999999999999999999999987 32 588999999999999999999999999999999999
Q ss_pred EEcCCCCeeceeeeeeecCCeeeeecCCCCcchHHHHHHHcCCCHHhHhhcCCC-CcccCccccCCCcccCCCcchHHHH
Q 002188 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDDAEQF 400 (955)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~-~~~~y~yL~~~~~~~~~~~dD~~~f 400 (955)
+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++|++|+|. ++.+|+||++++|..++++||+++|
T Consensus 167 ~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f 246 (697)
T 1lkx_A 167 QFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEF 246 (697)
T ss_dssp EECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHH
T ss_pred EECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHhhhcccChhhHHHHHHHHHHHHHhcCeeEEEe----CCCCccccCChhHHHHHHHhcCCCHHHHHHhhccceee
Q 002188 401 RIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI----DNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMR 476 (955)
Q Consensus 401 ~~~~~al~~lG~s~~e~~~i~~ilaAILhLGni~F~~~----~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~ 476 (955)
+++++||++|||+++|+..||+|||||||||||+|... ++.+.+++.+.+.++.||.||||++++|.++||+|++.
T Consensus 247 ~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 326 (697)
T 1lkx_A 247 KIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIS 326 (697)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEe
Confidence 99999999999999999999999999999999999872 22256888999999999999999999999999999999
Q ss_pred eC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCcceeeeeccccCcCCCCCChHHHHHhh
Q 002188 477 VG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINY 552 (955)
Q Consensus 477 ~~----~e~~~~~~~~~~A~~~rdalak~LY~~LF~wlV~~IN~~L~~~~~~~~~~IgILDifGFE~f~~NsfEQLcINy 552 (955)
++ +|.++++++++||.++||||||+||++||+|||++||++|.... ....+||||||||||+|+.||||||||||
T Consensus 327 ~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINy 405 (697)
T 1lkx_A 327 TGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNINF 405 (697)
T ss_dssp --------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHHH
T ss_pred eccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHHh
Confidence 99 99999999999999999999999999999999999999998643 34689999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHcCCCceecccCCcHhHHHhhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCC
Q 002188 553 ANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNP 632 (955)
Q Consensus 553 aNEkLQ~~f~~~~F~~Eq~eY~~EgI~~~~i~f~dN~~~ldlie~kp~Gil~lLDee~~~p~~td~~fl~kl~~~~~~~~ 632 (955)
|||||||+||+|+|+.||+||.+|||+|+.|+|.||++|||||++||.|||++|||||++|++||.+|++||++++++|+
T Consensus 406 ~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~~~~~ 485 (697)
T 1lkx_A 406 CNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNP 485 (697)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSST
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCC--------CCCcEEEcccccceeccchhhhhccccchHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCcc
Q 002188 633 CFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYK 703 (955)
Q Consensus 633 ~f~~~~--------~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~d~~~ll~~S~~~l-~~lf~~~~~~~~~~~~~~~~~~ 703 (955)
+|.+++ ..+|+|+||||+|+|+++||||||+|.|++|++++|++|++++ ..+|.....
T Consensus 486 ~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~~~~------------- 552 (697)
T 1lkx_A 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRP------------- 552 (697)
T ss_dssp TEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-----------------
T ss_pred ccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhcccccc-------------
Confidence 997532 4689999999999999999999999999999999999999885 567754221
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeEEeccCCCCCCCCcccchhhhhhhhccchhHHHHHhhcCCCcccChH
Q 002188 704 AGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQ 783 (955)
Q Consensus 704 ~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~phfIRCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~R~~~~ 783 (955)
.+...+.+||+++||.||++||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++|.
T Consensus 553 -~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~ 631 (697)
T 1lkx_A 553 -EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYT 631 (697)
T ss_dssp --------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSH
T ss_pred -ccccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccHH
Confidence 0112345799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccC--CChHHHHHHHHHHcCCCCcceeecceeeeeeec-ccccccccccccc
Q 002188 784 KFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTL 845 (955)
Q Consensus 784 eF~~RY~~L~~~~~~~--~d~~~~~~~iL~~~~~~~~~~~iGkTKVFLr~~-~l~~LE~~R~~~l 845 (955)
+|++||++|++..++. .|+++.|+.||..+++++++|++|+||||||.+ .+..||++|+.++
T Consensus 632 eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 632 RFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp HHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 9999999999976653 478899999999999999999999999999996 7899999998764
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.48 E-value=1.8e-14 Score=182.18 Aligned_cols=104 Identities=19% Similarity=0.324 Sum_probs=88.9
Q ss_pred ccchhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002188 845 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 924 (955)
Q Consensus 845 l~aav~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQ 924 (955)
.++|+.||++||||.+|+.|.+++.+++.||++|||+++|+.|..++ ...||+.||++||||++|+.|+..++|++.||
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQ 894 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45789999999999999999999999999999999999999998765 46789999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHhhhhhccchh
Q 002188 925 SVIRGWLVRRCSGDICLLKSVESKV 949 (955)
Q Consensus 925 s~~Rg~laRr~~~~l~~~~~~~~~~ 949 (955)
++|||+++|+++..|+.+++...++
T Consensus 895 s~~R~~laRr~~~~Lk~ear~~~~l 919 (1080)
T 2dfs_A 895 CCYRRMMAKRELKKLKIEARSVERY 919 (1080)
T ss_dssp HHHHHHHHHHHTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999888754443
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.00 E-value=8.2e-10 Score=91.57 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 002188 894 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLK 943 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~Rg~laRr~~~~l~~~~ 943 (955)
+.||++||++||||++|+.|..++.+++.||+.|||+++|+.+..++...
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~~ 54 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTK 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999999999998887653
No 14
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.84 E-value=2e-09 Score=89.19 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=27.1
Q ss_pred chhhhhhhhhcchhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002188 847 GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL 891 (955)
Q Consensus 847 aav~IQa~~Rg~laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~ 891 (955)
+++.||++||||++|+.|.+++.+++.||++|||+++|+.|..++
T Consensus 7 aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 7 ACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666665543
No 15
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.82 E-value=5.8e-09 Score=82.97 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002188 867 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 913 (955)
Q Consensus 867 ~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y 913 (955)
++.+++.||++|||+++|+.|..++ +..||++||++||||++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~-~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEM-KVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHhh
Confidence 3456677777777777777765543 344666666666666666654
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.4e-08 Score=80.77 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHH
Q 002188 894 HRAAVVIQRQIKSRVARQKLKNIKY--SSIMIQSVIRGWLVRRCS 936 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~r~--Aai~IQs~~Rg~laRr~~ 936 (955)
..||+.||++|||+++|+.|...++ |+++||+.|||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3589999999999999999999887 999999999999999976
No 17
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.77 E-value=3.3e-05 Score=65.08 Aligned_cols=49 Identities=31% Similarity=0.414 Sum_probs=40.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002188 866 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 914 (955)
Q Consensus 866 ~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~ 914 (955)
++...++.||+.+||+++|+.|.+++.+..|+.+||+++|+|..++.+.
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~ 52 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 3446688899999999999999988888888889999999999887543
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.75 E-value=4e-05 Score=64.31 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002188 867 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 914 (955)
Q Consensus 867 ~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~ 914 (955)
+...++.+|+.+||+++|+.|.+++.++.|+.+||+++|+|..++.+.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~ 50 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 345688999999999999999998888888889999999999887543
No 19
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.21 E-value=0.00044 Score=85.38 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHhhhhh
Q 002188 894 HRAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICLLKS 944 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~---r~Aai~IQs~~Rg~laRr~~~~l~~~~~ 944 (955)
..+|+.||++||||++|++|+++ +.|+++||+.||+|++||.+.-++...+
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~~k 832 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSK 832 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHhh
Confidence 45789999999999999999988 6799999999999999999877766554
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.91 E-value=0.0017 Score=54.54 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHh
Q 002188 895 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDIC 940 (955)
Q Consensus 895 ~AAi~IQ~~~R~~~~Rr~y~~~---r~Aai~IQs~~Rg~laRr~~~~l~ 940 (955)
..++.||+.+|||++|+.|.+. +.|+..||..+|+|++++...-.+
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~ 55 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWK 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 4788999999999999999998 778889999999999988754433
No 21
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.87 E-value=0.0013 Score=55.05 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHh
Q 002188 895 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDIC 940 (955)
Q Consensus 895 ~AAi~IQ~~~R~~~~Rr~y~~~---r~Aai~IQs~~Rg~laRr~~~~l~ 940 (955)
..++.||+.+|||++|+.|.+. +.|+..||..+|+|++++...-.+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~ 53 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWK 53 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence 4678999999999999999998 778999999999999987654433
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.07 E-value=0.0069 Score=78.19 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=52.8
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002188 859 QARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIR 928 (955)
Q Consensus 859 laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~R 928 (955)
+...+-.++...++.||++||||++|++|.+++.++.|+++||++||+|+.|+.|...+- ...++..++
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl-~~klkpLl~ 851 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXL-FFXIXPLLK 851 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence 444445556678999999999999999999888778899999999999999987765432 344444443
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.22 E-value=0.0079 Score=59.07 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+..+....|+|+|++|+|||+.++.+.+.+..
T Consensus 37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 334466789999999999999999999888755
No 24
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.91 E-value=0.099 Score=50.74 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=45.9
Q ss_pred hhhhhcchhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002188 852 QSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVI 927 (955)
Q Consensus 852 Qa~~Rg~laRk~~~~~r~aav~IQs~~Rg~~aRr~~~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~Aai~IQs~~ 927 (955)
=+-+..|+.|.++++..-++.. +-+.-.++..+..|+++||+.+|||++|++|+....+...+.++.
T Consensus 12 v~kV~~WLi~sRWrK~q~~~ls---------vIKLknKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 12 VKRVNHWLICSRWKKVQWCSLS---------VIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445667777777765543321 122223445577899999999999999999999877776665554
No 25
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.89 E-value=0.028 Score=55.05 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.......|+|+|++|+|||+.++.+.+.+..
T Consensus 37 ~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 37 ILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 334466789999999999999999999888765
No 26
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.44 E-value=0.02 Score=58.07 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=23.9
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.|+.......|+|.|.||||||+.+|.+...+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45666678899999999999999999997766
No 27
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.40 E-value=0.032 Score=56.63 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=26.9
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.......|+|.|.||||||+.+|.+...|.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346689999999999999999999999886
No 28
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.26 E-value=0.02 Score=58.61 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.8
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+..+.|.|.|.||||||+.++.|...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999998864
No 29
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.07 E-value=0.023 Score=57.81 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|||||.||||||+.++.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 9999999999999999887654
No 30
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.74 E-value=0.028 Score=56.22 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..-|+|+|.||||||+.++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999998865
No 31
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.38 E-value=0.035 Score=56.52 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+.|+|.|.||||||+..+.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998764
No 32
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.38 E-value=0.028 Score=56.37 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.|+|+|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999988764
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.37 E-value=0.075 Score=54.37 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=30.8
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..+.+......+.|+|+|++|+|||+.++.+.+.+...
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44455555578999999999999999999999888653
No 34
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.35 E-value=0.046 Score=54.21 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...+.++|.|++|+|||+.++.+...+..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999999998863
No 35
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.29 E-value=0.038 Score=55.08 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=23.0
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHH
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
|..-...+.|+|.|.||||||+.+|.+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 55556678999999999999999998854
No 36
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.27 E-value=0.037 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.1
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|+|-||||||+.++.+.+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999987765
No 37
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.16 E-value=0.062 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.2
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+++++. -...+.|+|+|+||||||++.+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344444 5668899999999999999999999988653
No 38
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=93.00 E-value=0.053 Score=37.45 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002188 894 HRAAVVIQRQIKSRVARQ 911 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr 911 (955)
+.||++||.+||+|+.++
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457778888887777653
No 39
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.98 E-value=0.067 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+.|+|.|++|+|||+.++.+..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999888864
No 40
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=92.96 E-value=0.078 Score=37.77 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002188 894 HRAAVVIQRQIKSRVARQK 912 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~ 912 (955)
+.||++||.+||+|+.|+.
T Consensus 6 e~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4577777777777776654
No 41
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.72 E-value=0.051 Score=54.73 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.|.|.|.||||||+.++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999987764
No 42
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.68 E-value=0.044 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....|+|+|.||||||+.++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456789999999999999999997765
No 43
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.68 E-value=0.063 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.-|.|+|+|.+|||||+.++.+-+.|-
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 358999999999999999999988763
No 44
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.63 E-value=0.044 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....-|+|+|.||||||+.++.+.+.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999998766
No 45
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.53 E-value=0.062 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.--|+|+|.||||||+.++.+.+.|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998876
No 46
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.53 E-value=0.066 Score=54.39 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=24.0
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
......|.|.|.||||||+.+|.+...+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999988763
No 47
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.50 E-value=0.065 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
-|+|+|-||||||+.++.+.+.|-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987763
No 48
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.43 E-value=0.07 Score=53.98 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....|+|.|.||||||+.++.+.+.|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999877
No 49
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.32 E-value=0.06 Score=54.91 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999998766
No 50
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.31 E-value=0.087 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....|+|.|.||||||+.++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999987765
No 51
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.27 E-value=0.11 Score=52.99 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.2
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
........|+|.|.+|||||+.++.+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456678999999999999999999998886
No 52
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.11 E-value=0.057 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....|+|.|.||||||+.++.+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999987765
No 53
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.08 E-value=0.065 Score=55.72 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.....++|+|+||||||+..|.++..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4568999999999999999999887653
No 54
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.07 E-value=0.077 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988775
No 55
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.92 E-value=0.099 Score=51.73 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...|+|+|.+|||||+.++.+..+|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999988854
No 56
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.90 E-value=0.15 Score=55.44 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.5
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.+..|.|+|.||||||+.++.|..+|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456789999999999999999999998854
No 57
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.86 E-value=0.11 Score=52.84 Aligned_cols=31 Identities=32% Similarity=0.239 Sum_probs=26.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.....|.|+|.||||||+.++.+...|...+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~ 50 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQG 50 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4568999999999999999999999886543
No 58
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.81 E-value=0.083 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....|+|+|.||||||+.++.+.+.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998876
No 59
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.79 E-value=0.098 Score=52.48 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..|+|+|.||||||+.++.++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 5799999999999999999999987643
No 60
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.73 E-value=0.09 Score=51.15 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=25.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.++|.|++|+|||+.++.+..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999988864
No 61
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.69 E-value=0.1 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.-|+|+|.+|||||+.++.+.++|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998776
No 62
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.67 E-value=0.093 Score=53.81 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
....|+|+|.||||||+..+.+++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999988754
No 63
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.63 E-value=0.049 Score=54.50 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999999864
No 64
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.62 E-value=0.11 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|++|||||+..|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 667899999999999999999999988
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.59 E-value=0.15 Score=50.98 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.....+..+....++|+|++|+|||+.++.+.+.+..
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3344445555556999999999999999999888743
No 66
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.57 E-value=0.14 Score=58.55 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=30.4
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+++.++ ......|+|+|++|||||++.+.++.++..
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3566664 366788999999999999999999998753
No 67
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.55 E-value=0.15 Score=57.14 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.++.+.. .....|+|+|++|||||++.+.++.++..-
T Consensus 114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3455544 334599999999999999999999998764
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.54 E-value=0.1 Score=52.40 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|.|.|++|||||+..|.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.53 E-value=0.07 Score=55.16 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..+.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346789999999999999999998866
No 70
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.48 E-value=0.093 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
...|+|+|+|||||||.+..+++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999998887
No 71
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.35 E-value=0.2 Score=50.56 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.3
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.+..++|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999887754
No 72
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.21 E-value=0.096 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998863
No 73
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.17 E-value=0.19 Score=54.26 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|||+|.||||||+.++.+.+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999997765
No 74
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.10 E-value=0.12 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
.+.|+|.|.||||||+.+|.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 35789999999999999999965
No 75
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.10 E-value=0.12 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.|.+|||||+.+|.|.+.|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999999887
No 76
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.98 E-value=0.15 Score=51.08 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..|.|+|.||||||+.+..++.+|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4689999999999999999999997643
No 77
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.97 E-value=0.17 Score=55.17 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=32.8
Q ss_pred CchhHHHHHHHHHHHHcC--ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 235 PHVYAITDTAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.|-.+. .+.+.+.... ...+++|.|++|+|||+.++.+.+++...
T Consensus 18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 454433 3344555443 46799999999999999999999988653
No 78
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.94 E-value=0.1 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|+|.|.||||||+.++.+-..|
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999887665
No 79
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.83 E-value=0.14 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998776
No 80
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.81 E-value=0.1 Score=50.46 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|+|.+|||||+.++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999988 443
No 81
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.77 E-value=0.17 Score=55.93 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=28.8
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
..++..|.|.|+||||||++++.+..++...++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456899999999999999999999998876544
No 82
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.74 E-value=0.2 Score=54.61 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.....|-|+|.||||||+.++.|...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999988875
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.66 E-value=0.063 Score=54.47 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-|+|.|.||||||+.++.+.++|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999864
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.66 E-value=0.15 Score=56.00 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=26.2
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+...|.|.|.||||||+.++.|...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356789999999999999999999887754
No 85
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.65 E-value=0.16 Score=50.22 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=23.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
....|+|.|.+|||||+.++.+.+.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998876
No 86
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.64 E-value=0.14 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred ceeEEEEcCCCCCChhHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKI 273 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~ 273 (955)
+...+.|.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467899999999999999997
No 87
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.50 E-value=0.14 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998776
No 88
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.46 E-value=0.15 Score=57.22 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.3
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
-...+.|+|+|+||||||++.+.++.++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3567899999999999999999999988654
No 89
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.46 E-value=0.26 Score=58.30 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+.+.|+|.|.||||||+..|.|...|...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 4578999999999999999999998886533
No 90
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.44 E-value=0.14 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
-|+|.|.+|||||+.++.+.++|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988873
No 91
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.42 E-value=0.14 Score=52.31 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|.|.|.||||||+.++.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 92
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.40 E-value=0.15 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 93
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.34 E-value=0.29 Score=51.85 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.5
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....+|+|.|++|+|||+.++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4567899999999999999999887764
No 94
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.32 E-value=0.18 Score=50.11 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
....|+|.|.+|||||+.++.+..+|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999988753
No 95
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.29 E-value=0.17 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~ 281 (955)
|+|+|-+|||||+.++.+.++|...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999988654
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.06 E-value=0.22 Score=54.40 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=26.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
...+.|.|.|++|||||++.+.+..++..-+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3468999999999999999999999887543
No 97
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=89.96 E-value=0.34 Score=61.24 Aligned_cols=19 Identities=32% Similarity=0.127 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCCHHHHHHh
Q 002188 451 GLITVAKLIGCDIGELKLA 469 (955)
Q Consensus 451 ~l~~~a~LLgv~~~~L~~~ 469 (955)
.+..|-..||++.++....
T Consensus 319 ~~~~Am~~lGfs~~e~~~I 337 (1052)
T 4anj_A 319 RMCTAMKKIGLDDEEKLDL 337 (1052)
T ss_dssp HHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 4666778899998876554
No 98
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.92 E-value=0.17 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998876
No 99
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.81 E-value=0.17 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|+|.|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 49999999999999999997765
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.79 E-value=0.2 Score=54.69 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..+.|.|.|.||||||++.+.+..++..-+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999887643
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.75 E-value=0.2 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....|-|.|.+|||||+.+|.+...|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 102
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.74 E-value=0.18 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
+..|+|+|-+|||||+.++.+.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35799999999999999999877
No 103
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.67 E-value=0.31 Score=53.83 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHHcCcee--EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQ--SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 243 ~Ay~~m~~~~~~Q--sIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+.........+. +++|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444455556667 999999999999999999887664
No 104
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.56 E-value=0.17 Score=50.11 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..-|+|+|.+|||||+.++.+.+.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.54 E-value=0.33 Score=54.65 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 234 SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 234 ~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
-|++......+++.+.. -...+.|+|.|.+|||||+.++.+...+
T Consensus 148 ~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 148 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36777777788888754 4567899999999999999999998764
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.52 E-value=0.14 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
..+..|+|.||+|+|||..++.+-+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987643
No 107
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.51 E-value=0.11 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=17.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHH-HHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAM-QYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il-~yL 278 (955)
..+.|.|.|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999998 665
No 108
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.46 E-value=0.11 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
.+...|.|.|.+|||||+.++.+..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999988887554
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.41 E-value=0.29 Score=54.04 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=31.4
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+...+...+.+.+|+|+|++|+|||+.++.+.+.+..
T Consensus 34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555556677889999999999999999999988754
No 110
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.39 E-value=0.19 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|+|-+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997766
No 111
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.32 E-value=0.18 Score=53.29 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.....|.|.|.||||||+.+|.+.+.|-
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999987663
No 112
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.26 E-value=0.27 Score=52.48 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998876
No 113
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.21 E-value=0.2 Score=49.58 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~ 280 (955)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999888754
No 114
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.20 E-value=0.2 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
.|.|+|.+|||||+.++.+-+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999998766
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.17 E-value=0.2 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..-|+|.|-+|||||+.++.+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999988774
No 116
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.10 E-value=0.47 Score=49.70 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.4
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+=.|+|+|.+|||||+.++.+.+.+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999998876
No 117
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.98 E-value=0.22 Score=54.54 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+++.- -...++|.|.|+||||||+..+.|+.++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34555433 3667999999999999999999999998
No 118
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.95 E-value=0.19 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=23.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..-|+|+|-+|||||+.++.+.++|-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998873
No 119
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.92 E-value=0.16 Score=52.34 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..-|+|.|-+|||||+.++.+.+.|
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999998765
No 120
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.89 E-value=0.14 Score=51.88 Aligned_cols=26 Identities=38% Similarity=0.291 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...-|.|+|.||||||+.++.+.+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999886643
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.87 E-value=0.26 Score=50.07 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=25.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..+.++|.|++|||||+.++.++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 51 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG 51 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 467899999999999999999998776543
No 122
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.86 E-value=0.3 Score=53.70 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+.+..+..+++-+|+|+|.+|.|||.+++.+++-|...
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 344555667889999999999999999999999999654
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.84 E-value=0.26 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+--|+|.|-+|||||+.++.+.+.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988776
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.80 E-value=0.099 Score=58.50 Aligned_cols=28 Identities=36% Similarity=0.601 Sum_probs=24.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.|+|+|+||||||+..+.++.++..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999999887643
No 125
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.76 E-value=0.3 Score=54.68 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHHc-----------CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 236 HVYAITDTAIREMIRD-----------EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 236 HiyavA~~Ay~~m~~~-----------~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+..+.......++.. ...+.|.|.|++|||||++++.+..++..-+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 4455555555555422 2468999999999999999999999887543
No 126
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.70 E-value=0.2 Score=50.52 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=24.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..-|+|+|-+|||||+.++.+.++|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999988854
No 127
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.69 E-value=0.23 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+...|+|.|.+|||||+.++.+-+.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998877
No 128
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.64 E-value=0.23 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
.++..|.|+|.+|||||+.++.+-+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999988764
No 129
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.62 E-value=0.19 Score=51.24 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+.++.++..+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999876543
No 130
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.60 E-value=0.25 Score=49.79 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.6
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+..|+|+|-+|||||+.++.+-++|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999998877
No 131
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.47 E-value=0.19 Score=52.77 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 346889999999999999988885443
No 132
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.45 E-value=0.26 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.|++|+|||+.++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35679999999999999999987655
No 133
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=88.38 E-value=0.31 Score=34.73 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 002188 917 KYSSIMIQSVIRGWLVRRCS 936 (955)
Q Consensus 917 r~Aai~IQs~~Rg~laRr~~ 936 (955)
..+|++||.+||+++.|+..
T Consensus 6 e~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999874
No 134
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.28 E-value=0.2 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997765
No 135
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.26 E-value=0.24 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.|.|.|.+|||||+..+.++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4688999999999999999999887
No 136
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.25 E-value=0.27 Score=50.79 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+.+.+.|.|++|||||+.++.++....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999986544
No 137
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.24 E-value=0.35 Score=52.86 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHc--------CceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 237 VYAITDTAIREMIRD--------EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 237 iyavA~~Ay~~m~~~--------~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+..+.......++.. ..+..|.|.|.+|||||++++.+..++...+
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 555555555555432 3467899999999999999999999987644
No 138
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.18 E-value=0.18 Score=49.64 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=17.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999986665
No 139
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.17 E-value=0.21 Score=52.72 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|+|+|.||||||+.++.+.+.|
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999987654
No 140
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.17 E-value=0.28 Score=51.14 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|+|.|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
No 141
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.12 E-value=0.22 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|+|.|.||||||+.++.+.+.|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998866
No 142
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.10 E-value=0.23 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..-|+|.|.+|||||+.++.+.+.|-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999988874
No 143
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.04 E-value=0.27 Score=49.65 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=25.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++--|+|+|-+|||||+.++.+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999988854
No 144
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.99 E-value=0.4 Score=55.02 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCc-eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 241 TDTAIREMIRDEV-NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 241 A~~Ay~~m~~~~~-~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
|..+...+..... ..+++|.|++|+|||+.++.+.+++...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3444555555433 7899999999999999999999887553
No 145
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.70 E-value=0.36 Score=56.21 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=38.0
Q ss_pred CchhHHHHHHHHHHHHc---------CceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 235 PHVYAITDTAIREMIRD---------EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~---------~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
-.++.+-......++.. ...+.|.|.|.||||||++++.|..++..-++
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 35677766777666642 34689999999999999999999998875443
No 146
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=87.68 E-value=3.5 Score=34.59 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=42.7
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCC
Q 002188 117 KKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSAN 165 (955)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~n 165 (955)
++|..|.+...+|.|-+|+|+....+...|..+|..+..+..+++....
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECSS
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhhc
Confidence 4566899999999999999999888899999999999999888876543
No 147
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.65 E-value=0.19 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.--|.|+|.||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44699999999999999999887664
No 148
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.59 E-value=0.37 Score=50.99 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..-|+|+|-+|||||+.++.+-++|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~ 31 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN 31 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 4579999999999999999999888653
No 149
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.57 E-value=0.24 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
=..++|+|.||||||+..++++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 357899999999999999988765
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.49 E-value=0.3 Score=49.05 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..-|+|+|-+|||||+.++.+.+.|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999998765
No 151
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.31 E-value=0.54 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=34.4
Q ss_pred CCCCCchhH---HHHHHHHHHH-HcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 231 SIESPHVYA---ITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 231 ~~~~PHiya---vA~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...+||-|. |+......+. ..+....|+++|-+|||||+.++.+-+.|..
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 334677666 5533332221 2344678999999999999999999888754
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.31 E-value=0.34 Score=48.30 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
...|+|+|-+|||||+.++.+-+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998876
No 153
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.29 E-value=0.49 Score=50.74 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.....|+|.|++|+|||+.++.+.+.+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445689999999999999999999988653
No 154
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.25 E-value=0.22 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+.-|+|.|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999987766
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.24 E-value=0.31 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 48999999999999999987766
No 156
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.22 E-value=0.37 Score=51.69 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...++|.|++|+|||+.++.+.+.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999887743
No 157
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=87.21 E-value=0.28 Score=33.84 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 002188 917 KYSSIMIQSVIRGWLVRRC 935 (955)
Q Consensus 917 r~Aai~IQs~~Rg~laRr~ 935 (955)
..||++||.+||+++.|+.
T Consensus 6 e~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999864
No 158
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.19 E-value=0.46 Score=52.11 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=28.2
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.....+..++-..+++.|++|+|||+.++.+.+.|..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444455554334999999999999999999998853
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.16 E-value=0.53 Score=50.54 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.9
Q ss_pred HHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34455555555699999999999999999998874
No 160
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.12 E-value=0.45 Score=52.32 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
..+.|.|.|.+|+|||+++..+..+|+..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987543
No 161
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=87.12 E-value=2 Score=41.68 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 002188 917 KYSSIMIQSVIRGWLVRRCSGDI 939 (955)
Q Consensus 917 r~Aai~IQs~~Rg~laRr~~~~l 939 (955)
..++++||+.+|||++|+.++..
T Consensus 45 ~~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Confidence 36999999999999999998654
No 162
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=86.81 E-value=0.53 Score=51.86 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+++|+|++|.|||..++.+.+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999998885
No 163
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.80 E-value=0.28 Score=57.50 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+.|+|+|++|||||++.+.++.++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999987763
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.75 E-value=0.22 Score=54.70 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=26.7
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+..++|+|+|++|+|||+.++.+.+.+..
T Consensus 41 ~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 41 REEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp GTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3566889999999999999999999887754
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.70 E-value=0.3 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999999999988765
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.64 E-value=0.41 Score=55.09 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=30.1
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.++..+.-.+++|.|++|+|||+.++.|.+.+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 445566666667899999999999999999998876
No 167
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.64 E-value=0.39 Score=49.63 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..-|+|.|.+|||||+.++.+.++|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999654
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.60 E-value=0.21 Score=55.04 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.4
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.....+|+|+|++|+|||+.++.+.+.+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 466789999999999999999999887754
No 169
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.56 E-value=0.36 Score=50.76 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=23.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+-.|.|.|.||||||+.++.+.+.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999988773
No 170
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.54 E-value=0.29 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
+-.|+|+|.+|||||+.++.+-+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988755
No 171
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.50 E-value=0.41 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.||+|+|||+.++.+-+++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 45789999999999999998886654
No 172
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.48 E-value=0.33 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|+|+|-+|||||+.++.+.+.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998877
No 173
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.43 E-value=0.27 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~ 276 (955)
.|.|+|.+|||||+.+|.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999999877
No 174
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.35 E-value=0.48 Score=48.74 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=26.0
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
.++.++ ...+.+.|.|+||||||+..|.+.-.
T Consensus 14 ~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345554 44678999999999999999999876
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.27 E-value=0.29 Score=53.64 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=22.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.++|+|++|+|||+.++.+.+.|..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3999999999999999999986643
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.26 E-value=0.31 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~ 276 (955)
.|.|.|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 177
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=86.25 E-value=0.56 Score=55.73 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.4
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
......|+|+|-||||||+.++.+-+.|...
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 4556789999999999999999998888653
No 178
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.23 E-value=0.27 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999986544
No 179
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.19 E-value=0.53 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+-.|-|+|.||||||+.++.+...|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 347999999999999999999888764
No 180
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.19 E-value=0.3 Score=57.13 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.|+|..+..++|..- .+....|+++|-||||||+.++.+-+.|..
T Consensus 377 rpeV~~vLr~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccc--cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 377877777776322 234578999999999999999999999875
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.19 E-value=0.35 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+|+|.|++|+|||+.++.+.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887644
No 182
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.11 E-value=0.33 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999999876553
No 183
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.11 E-value=0.31 Score=51.16 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999986554
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.10 E-value=0.16 Score=48.68 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (955)
..+..|+|.||+|+|||..++.+-
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345679999999999998887663
No 185
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.06 E-value=0.35 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
...|+|+|+||+|||+++..+++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 579999999999999999988874
No 186
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.99 E-value=0.31 Score=51.89 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999999987654
No 187
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.92 E-value=0.37 Score=50.76 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.. +.+.|.|+||||||+..|.+.-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 788999999999999999986554
No 188
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.89 E-value=0.31 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
...|+|+|+||+||||++-.+++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999977665
No 189
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.88 E-value=0.73 Score=50.57 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.7
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.+.+++|+|++|+|||+.++.+.+.+..
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444678999999999999999999888753
No 190
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.82 E-value=0.41 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|.|-+|||||+.++.+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998877
No 191
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.82 E-value=0.34 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (955)
..+.+.|.|+||||||+..|.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678899999999999999998764
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.75 E-value=0.48 Score=51.67 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
....++..+....++|.|++|+|||+.++.+.+.+.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445555434599999999999999999998875
No 193
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.70 E-value=0.47 Score=49.87 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..-|+|.|-+|||||+.++.+.++|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999997643
No 194
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.62 E-value=0.46 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.--|+|.|-+|||||+.++.+-+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999998877
No 195
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=85.58 E-value=0.67 Score=48.02 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
++.+-+.+...+.. ++.++++|++|||||+....++
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 44555566655543 4789999999999998776654
No 196
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.54 E-value=0.52 Score=49.04 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...-|+|.|.+|||||+.++.+.++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998865
No 197
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.48 E-value=0.75 Score=50.50 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=24.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....++|.|++|+|||+.++.+...+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999999887
No 198
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.44 E-value=0.42 Score=51.13 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.3
Q ss_pred HHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 247 ~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 31 GYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp TTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 334445545599999999999999999998874
No 199
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.39 E-value=0.31 Score=52.19 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3467899999999999999999866543
No 200
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.38 E-value=0.3 Score=52.61 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.|+||||||+..|.|.-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 346789999999999999999886544
No 201
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.35 E-value=0.4 Score=51.23 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|+-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998765
No 202
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.30 E-value=1 Score=48.48 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|+|+|++|+|||+.++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998766
No 203
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.20 E-value=0.35 Score=51.51 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346788999999999999999875443
No 204
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.19 E-value=0.36 Score=51.78 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999999986654
No 205
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.18 E-value=0.46 Score=49.11 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.-|+|.|-+|||||+.++.+.++|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4699999999999999999999997643
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.18 E-value=0.46 Score=49.87 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..-.|.|+|-+|||||+.++.+-+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346799999999999999998877653
No 207
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.13 E-value=0.42 Score=50.66 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 457789999999999999999886654
No 208
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.10 E-value=0.32 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (955)
..+.+.|.|+||||||+..|.|.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999987543
No 209
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.91 E-value=0.37 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456889999999999999999885443
No 210
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.89 E-value=0.43 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999988765
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.74 E-value=0.62 Score=47.88 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..+.++|.|++|||||+.+..++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999988887776543
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.70 E-value=0.45 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|+|.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 213
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.66 E-value=0.35 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999999885444
No 214
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.61 E-value=0.19 Score=55.43 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=24.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.|+|+|+||||||+..+.++.++..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4568999999999999999999887644
No 215
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.54 E-value=0.36 Score=50.32 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999886554
No 216
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.44 E-value=0.31 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45778999999999999999885443
No 217
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.42 E-value=0.52 Score=52.88 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+..++|.|.||||||+.+|.++..+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~ 63 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG 63 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 567799999999999999999987775433
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.32 E-value=0.45 Score=50.97 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.|.|.|+||||||+..+.|+..+...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 578999999999999999988765433
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.26 E-value=0.58 Score=50.15 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...+.++|.|++|||||+.++.+...++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999887765
No 220
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.25 E-value=0.81 Score=48.99 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=27.0
Q ss_pred HHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 245 y~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...++..+....++|+|++|.|||+.++.+.+.+.
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34444454434499999999999999999998874
No 221
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.19 E-value=0.46 Score=49.65 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+..-|+|.|.+|||||+.++.+.++|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45689999999999999999999998653
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.17 E-value=1.2 Score=54.59 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHhhcCCCCC-CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 215 KVPLYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 215 ~l~iY~~~~~~~Y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.-|+.+..+.|+.....+ ..-=..... ...++..+....++|.||+|+|||..++.+.+.+..
T Consensus 168 ~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~-l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 168 RLENFTTNLNQLARVGGIDPLIGREKELER-AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp -CCSSSCBHHHHHHTTCSCCCCSCHHHHHH-HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHHhcCCCCCccCCHHHHHH-HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 44557777777776554432 110111122 233445567788999999999999999999988754
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.16 E-value=0.53 Score=51.14 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...+.|+|.|.+|||||++++.+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999998875
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.16 E-value=0.49 Score=47.78 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=25.0
Q ss_pred HHHHHH--cCceeEEEEcCCCCCChhHHHHHHHH
Q 002188 245 IREMIR--DEVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 245 y~~m~~--~~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...++. -...+.++|.|++|||||+.++.++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344443 24567899999999999999998876
No 225
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.09 E-value=0.72 Score=50.20 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=23.2
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
......|+|+|++|+|||+.++.+.+.+
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999986554
No 226
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.06 E-value=1.1 Score=50.07 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH---HcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 239 AITDTAIREMI---RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 239 avA~~Ay~~m~---~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+++.+...+. ..++-.+|+|.|.+|||||+.++.+.+.|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 46677766654 334456799999999999999998877654
No 227
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.06 E-value=0.43 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999987543
No 228
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.97 E-value=0.48 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34678899999999999999988543
No 229
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.87 E-value=0.97 Score=50.26 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.1
Q ss_pred HHHHHc--CceeEEEE--cCCCCCChhHHHHHHHHHHHh
Q 002188 246 REMIRD--EVNQSIII--SGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 246 ~~m~~~--~~~QsIii--sGESGAGKTe~~K~il~yL~~ 280 (955)
..+... ...+.++| +|++|.|||+.++.+.+.+..
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 444445 56889999 999999999999998876643
No 230
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.79 E-value=0.5 Score=48.56 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
....|+|+|.||||||+.+..+++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 357899999999999999988876543
No 231
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=83.78 E-value=0.63 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+|+|.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999887765
No 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.68 E-value=0.57 Score=51.35 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
|.....+.-|+|+|.||||||+.+..+.+.+
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 4444556789999999999999998886654
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.67 E-value=0.35 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.|++|+|||+.++.+.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999998765
No 234
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.48 E-value=0.47 Score=49.79 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999885543
No 235
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.45 E-value=0.53 Score=53.07 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 346788999999999999999886544
No 236
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.32 E-value=0.23 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|+.++.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4578999999999999999999977654
No 237
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.25 E-value=0.83 Score=47.59 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.2
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+..-|+|.|-+|||||+.++.+.++|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345778999999999999999999999876
No 238
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.20 E-value=1.4 Score=50.92 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++..+....++|.|++|.|||..++.+.+.+..
T Consensus 195 ~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 344456678999999999999999999988854
No 239
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.12 E-value=0.85 Score=49.40 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.1
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
..+.|.+.|.+|+|||++++.+..+++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999886543
No 240
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.06 E-value=0.45 Score=50.48 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|...+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999999886543
No 241
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.04 E-value=0.56 Score=51.14 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....|+|.|++|+|||+.++.+.+.+
T Consensus 43 ~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 43 PGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHhC
Confidence 345569999999999999999887765
No 242
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=82.96 E-value=0.45 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45788999999999999999886544
No 243
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.86 E-value=0.72 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999997766
No 244
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=82.81 E-value=0.46 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|+-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46788999999999999999885544
No 245
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.81 E-value=0.6 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
..|+|.|-+|||||+.++.+-+.|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998887
No 246
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.79 E-value=1.4 Score=50.43 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
.+..|+++|.+|||||+++..+..+|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3689999999999999999999999987543
No 247
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.70 E-value=1.2 Score=48.72 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=26.6
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+-+.+++++|+.|.|||+.++.+.+.|..
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 455789999999999999999999998864
No 248
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.69 E-value=1.5 Score=47.36 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=34.7
Q ss_pred HHHHhhcCCCC----CCchhHHHHHHHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 223 YIEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 223 ~~~~Y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..++|+-.... ..|+. ...+.++. .+.+..+++.|++|.|||+.++.+.+.+
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~----~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDK----ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHH----HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhhCCCCHHHHhCcHHHH----HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35667654433 23332 33444444 3446788999999999999999998776
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.69 E-value=0.58 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (955)
..+.++|.|++|||||+.++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988653
No 250
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.48 E-value=0.79 Score=47.47 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....|.|+|.+|||||+.++.+.+.|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999988765
No 251
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.32 E-value=0.8 Score=47.36 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
....|+|.|-+|||||+.++.+-+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988873
No 252
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=82.14 E-value=1.2 Score=54.93 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCCHHHHHHh
Q 002188 451 GLITVAKLIGCDIGELKLA 469 (955)
Q Consensus 451 ~l~~~a~LLgv~~~~L~~~ 469 (955)
.+..|-+.||++.++....
T Consensus 307 ~~~~Am~~lG~s~~e~~~i 325 (795)
T 1w7j_A 307 NTRQACTLLGISDSYQMGI 325 (795)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 4566778899998765443
No 253
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=81.98 E-value=0.6 Score=51.97 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=23.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.+.+.|.|+||||||+.+|.|..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999887643
No 254
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.87 E-value=0.61 Score=50.66 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|+|.||+|+|||..++.+-++.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 457789999999999999998887654
No 255
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.83 E-value=0.68 Score=47.97 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+..-|+|.|-+|||||+.++.+.++|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356799999999999999999988873
No 256
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.72 E-value=0.77 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~y 277 (955)
..|+|+|-||||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999998763
No 257
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=81.66 E-value=0.57 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.|.|+||||||+..|.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999999999999986544
No 258
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=81.56 E-value=1.4 Score=47.99 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH-hc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA-AL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~-~~ 281 (955)
.+.|+|.|++|+|||..++.+.+.+. ..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~ 180 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK 180 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999887 53
No 259
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.52 E-value=0.69 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.+.|.|+||||||+..|.|.-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 346788999999999999998886443
No 260
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.48 E-value=1 Score=45.57 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=23.5
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+...--|.|+|-+|||||+.++.+-+.|
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3446679999999999999999998875
No 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=81.38 E-value=0.64 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45788999999999999999886544
No 262
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.34 E-value=0.68 Score=48.12 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.-|+|.|-+|||||+.++.+.++|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999988873
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.32 E-value=0.67 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
-.|+|+|.||||||+.++.+.+.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887663
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=81.29 E-value=0.69 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+|.|++|||||+..+.|.--|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999988765444
No 265
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.17 E-value=0.71 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|.|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3569999999999999999887755
No 266
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=80.87 E-value=0.6 Score=50.60 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356789999999999999999986554
No 267
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=80.83 E-value=0.76 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 346788999999999999999886544
No 268
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.57 E-value=1 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+++|+|++|+|||+.++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999998877
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.31 E-value=1.7 Score=49.90 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.9
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.+..|+++|.+|+|||+++-.+..||+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998754
No 270
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.28 E-value=0.83 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+|+|.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999999886553
No 271
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.27 E-value=0.85 Score=48.51 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.+.++|.|++|||||+.+++++..++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 568899999999999999999987554
No 272
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=80.18 E-value=0.82 Score=51.16 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 346788999999999999999886543
No 273
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.18 E-value=0.87 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+.+-.|++.|++|.|||+.++.+-+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999998887
No 274
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=80.10 E-value=1.4 Score=44.56 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.1
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
....--|+|.|.+|||||+.+..++..+.
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34456899999999999999999888763
No 275
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.08 E-value=1.2 Score=50.97 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=26.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.++.|++.|.+|||||+++..+..+|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 468899999999999999999999998654
No 276
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=80.07 E-value=1.6 Score=44.27 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.+......--|+|.|.+|+|||+.+..++..+.
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444455667899999999999999998887764
No 277
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=79.93 E-value=0.77 Score=51.26 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 346788999999999999999886443
No 278
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.91 E-value=0.97 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..|+|.|++|.|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999887764
No 279
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.58 E-value=0.85 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|.|++|+|||+.+|.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3449999999999999999987754
No 280
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=79.57 E-value=0.88 Score=51.11 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 346788999999999999999886544
No 281
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=79.57 E-value=0.86 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~ 276 (955)
+.--|+|+|-+|||||+.++.+-+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 355799999999999999998864
No 282
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.48 E-value=1.1 Score=52.74 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.8
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
......++|.|++|+|||+.+|.|-..+
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457799999999999999999998887
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.16 E-value=0.75 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
--|+|+|.||||||+.++.+.+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 468999999999999998886654
No 284
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=79.16 E-value=0.83 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45788999999999999999886443
No 285
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.12 E-value=2.8 Score=41.70 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=35.6
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH
Q 002188 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 212 P~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 274 (955)
.|..+++ +++..+.....+...|-.| =..|+..+... +.+++.+++|+|||.+.-..
T Consensus 4 ~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~---~~~lv~apTGsGKT~~~~~~ 60 (206)
T 1vec_A 4 EFEDYCL-KRELLMGIFEMGWEKPSPI--QEESIPIALSG---RDILARAKNGTGKSGAYLIP 60 (206)
T ss_dssp SGGGSCC-CHHHHHHHHTTTCCSCCHH--HHHHHHHHHTT---CCEEEECCSSSTTHHHHHHH
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHccC---CCEEEECCCCCchHHHHHHH
Confidence 4555554 4566666655444334333 34566666543 45999999999999876543
No 286
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.01 E-value=0.7 Score=52.57 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.5
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....-|||+|-||||||+.++.+.+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999886644
No 287
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=78.93 E-value=1.5 Score=48.33 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHHHH-HcCceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 242 DTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 242 ~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
..+...+. .-.....|.|.|.+|||||+..+.++.++...++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 44555553 3466789999999999999999999998865443
No 288
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=78.92 E-value=0.99 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
=-|+|+|.+||||++.++.+.+.+
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHc
Confidence 368999999999999999998865
No 289
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=78.78 E-value=0.87 Score=51.48 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4468899999999999999999876553
No 290
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.68 E-value=1.4 Score=47.71 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=26.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
...|+++|.+|+|||+++..+..+++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999987543
No 291
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.61 E-value=0.86 Score=50.64 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..|...++.=.+.|.+.|-|.+|||||+..+.|+..+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3677788766889999999999999999999998875
No 292
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=78.56 E-value=0.71 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+.+.|.|+||||||+..|.|.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 34578899999999999999988543
No 293
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.47 E-value=2.3 Score=52.08 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.2
Q ss_pred HHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 248 m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
++..+..-.++|.|++|.|||..++.+.+.+..
T Consensus 195 ~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 334455667999999999999999999998854
No 294
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.39 E-value=2.9 Score=45.64 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=41.5
Q ss_pred ecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
.++|..+++ +++..+.........|..+ =..|+..++.. .++.+|+.+++|+|||.+.-..+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~--Q~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQKPSKI--QERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCSCCHH--HHHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 377888876 5566655555444444444 34667666654 45789999999999998766544
No 295
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.21 E-value=0.99 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|+|.|++|+|||..++.+.+.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4789999999999999999988765
No 296
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=78.21 E-value=1.3 Score=47.95 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=24.9
Q ss_pred HHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 246 REMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 246 ~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
..+...-..+.+.|.|+||||||+..+.|+
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 344445567899999999999999999988
No 297
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.04 E-value=1.9 Score=48.73 Aligned_cols=47 Identities=19% Similarity=0.013 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
|.+..+.-+|..-+..-.+-|.+.|.|.||+|||+.++.|.+++..-
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 56778999999999999999999999999999999999999998763
No 298
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=78.03 E-value=1.7 Score=52.06 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+...|+|+|-||||||+.++.+-+.|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999854
No 299
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.74 E-value=1 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL 278 (955)
-|+|+|.||||||+.++.+.+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 58999999999999998887655
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.62 E-value=0.97 Score=49.75 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|+|.+|||||+.++.+.+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999998886654
No 301
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.57 E-value=1.3 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL 278 (955)
|||.|..||||++-++.|.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998876
No 302
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=77.43 E-value=1.5 Score=44.54 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 257 IIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
|+|-|--|||||+-++.+.++|...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 88999999999999999999997643
No 303
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=77.24 E-value=0.79 Score=52.95 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.4
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
...+.+.|.|+||||||+.+|.|..++...+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 45788999999999999999999998865544
No 304
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=77.13 E-value=1 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
-.|.|+|++|||||+.++.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998776
No 305
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.07 E-value=1.3 Score=50.89 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..|...++.-.+.|.+.|.|.||||||+..+.|..++.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35788887778899999999999999999999988763
No 306
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.99 E-value=1.2 Score=49.42 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|.|++|+|||..++.+.+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999999999988776
No 307
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.84 E-value=3 Score=41.50 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=32.8
Q ss_pred CHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHH-HHHHHHH
Q 002188 220 GNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK-IAMQYLA 279 (955)
Q Consensus 220 ~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K-~il~yL~ 279 (955)
+++..+.........|..| =..|+..+... +.+++.+++|+|||.+.- .+++++.
T Consensus 9 ~~~l~~~l~~~~~~~~~~~--Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPI--QAAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHH--HHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCCCCCCHH--HHHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 4555555554443334333 34555555543 459999999999998844 3445553
No 308
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=76.45 E-value=1.3 Score=51.37 Aligned_cols=29 Identities=28% Similarity=0.187 Sum_probs=24.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
+.+.|.|+||||||+..+.|.-.+..-+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 78999999999999999999887754433
No 309
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.27 E-value=1.9 Score=44.09 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.++|.|++|+|||..+-.++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~ 56 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999988877655433
No 310
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=76.26 E-value=0.75 Score=51.30 Aligned_cols=27 Identities=37% Similarity=0.353 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345788999999999999999886543
No 311
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=76.11 E-value=2.5 Score=48.45 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=26.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
..++|.|..|+|||+.++.++.+|...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999987654
No 312
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=75.87 E-value=6.5 Score=39.55 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=39.0
Q ss_pred eecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.|..+++ +++..+.........|..|. ..|+..+... ..+++.+++|+|||.+.-..+-..
T Consensus 12 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 12 HSSGFRDFLL-KPELLRAIVDCGFEHPSEVQ--HECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp --CCSTTSCC-CHHHHHHHHHTTCCCCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCCchhhhhhHHHHHh
Confidence 3456777765 45666555554444454443 3555555543 349999999999998876655433
No 313
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=75.75 E-value=3.4 Score=43.10 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=34.9
Q ss_pred cCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH-HHHHHh
Q 002188 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (955)
Q Consensus 211 NP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yL~~ 280 (955)
++|..+++ ++...+.....+...|..|. ..|+..++.. +.+++.+++|||||.+.-+. ++.+..
T Consensus 43 ~~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 43 KTFKDLGV-TDVLCEACDQLGWTKPTKIQ--IEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp CCTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 34444443 33334333333333343332 3455555533 56999999999999986544 445544
No 314
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.60 E-value=1.3 Score=45.63 Aligned_cols=36 Identities=11% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHHc-CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~~-~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+.++.. .+.-+|+|.|..|+|||+.+..+.+++
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 445555543 223579999999999999999999887
No 315
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=75.57 E-value=3.4 Score=49.33 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+..++|+|..|+|||++...++..|..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999865
No 316
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=75.54 E-value=1.4 Score=45.85 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=23.0
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+-.|.|+|++|||||+.++.+-+.|-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999988773
No 317
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.31 E-value=1 Score=53.49 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=25.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...+.+.|.|+||||||+..|.++..+.-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45789999999999999999999876643
No 318
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.02 E-value=2 Score=46.19 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~y 277 (955)
+.++|+|+.|.|||+..+.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 79999999999999999988765
No 319
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.92 E-value=1.4 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (955)
...+|+|.|++|.|||..++.+.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999988554
No 320
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=74.73 E-value=1.4 Score=48.82 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHc--CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIRD--EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.....++.. ...+.+.|.|++|||||+.+++++-.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555543 356899999999999999999887553
No 321
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=74.29 E-value=3.2 Score=50.99 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=36.6
Q ss_pred ecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
+|||..+++ ++...+........|-.++ ..+...++.. ++.++|+|++|||||+....++
T Consensus 71 ~~~f~~~~l-~~~~~~~l~~r~~lP~~~q---~~~i~~~l~~--~~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 71 INPFTGREF-TPKYVDILKIRRELPVHAQ---RDEFLKLYQN--NQIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp BCTTTCSBC-CHHHHHHHHHHTTSGGGGG---HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCccccCC-CHHHHHHHHHhhcCChHHH---HHHHHHHHhC--CCeEEEECCCCCCHHHHHHHHH
Confidence 578888774 5555554444333332222 2333334433 5789999999999999655553
No 322
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.13 E-value=1.3 Score=51.97 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHH--cCceeEEEEcCCCCCChhHHHHHHH-HHHHh
Q 002188 244 AIREMIR--DEVNQSIIISGESGAGKTETAKIAM-QYLAA 280 (955)
Q Consensus 244 Ay~~m~~--~~~~QsIiisGESGAGKTe~~K~il-~yL~~ 280 (955)
+..++.- =.+.+.+.|.|+||||||+.++.++ .-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4555544 1467899999999999999999973 44443
No 323
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=74.08 E-value=2.2 Score=44.15 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
++.--|+|.|..|||||+-++.|.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999998877
No 324
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.04 E-value=3.1 Score=42.01 Aligned_cols=62 Identities=27% Similarity=0.413 Sum_probs=34.2
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHH-HHHHHHHH
Q 002188 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYLA 279 (955)
Q Consensus 212 P~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~-K~il~yL~ 279 (955)
.|..+++ +++..+.....+...|- .+=..|+..+... ..+++.+++|+|||.+. -.+++++.
T Consensus 15 ~f~~l~l-~~~l~~~l~~~g~~~~~--~~Q~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l~ 77 (224)
T 1qde_A 15 KFDDMEL-DENLLRGVFGYGFEEPS--AIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRID 77 (224)
T ss_dssp CGGGGTC-CHHHHHHHHHHTCCSCC--HHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCc--HHHHHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3444443 34444444333322233 2334556555543 45999999999999883 44455553
No 325
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=73.81 E-value=1.7 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+++|.|++|+|||+.++.|...+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6999999999999999999988764
No 326
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=73.39 E-value=2.5 Score=43.93 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...-++++|+.|+|||+.+-.++.-+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3578999999999999988777665544
No 327
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=73.15 E-value=0.95 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..+.+.|.|+||||||+..|.++..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456899999999999999999987655
No 328
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.06 E-value=1.6 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
..+.+|+|.|++|+|||..++.+-+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 55788999999999999999888554
No 329
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=73.04 E-value=2.1 Score=50.15 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.....|++.|-+|||||+.++.+.++|-..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345789999999999999999999998654
No 330
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=72.84 E-value=3.5 Score=45.40 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=39.2
Q ss_pred eecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHH-HHHHHH
Q 002188 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (955)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yL~ 279 (955)
.+.+|..+++ ++...+.........|..+ =..|+..++.. .++.+|+.+++|||||.+.-+ +++.+.
T Consensus 23 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 23 SVKSFEELRL-KPQLLQGVYAMGFNRPSKI--QENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp CSSCTGGGTC-CHHHHHHHHHTTCCSCCHH--HHHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred ccCCHhhCCC-CHHHHHHHHHcCCCCCCHH--HHHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 4455555554 3444444444333334433 34556666543 467899999999999988644 344443
No 331
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=72.71 E-value=1.6 Score=51.35 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.0
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..+.+.|.|+||||||+..|.|.-.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 367899999999999999999876553
No 332
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=72.58 E-value=1.9 Score=42.88 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.3
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|||||+..+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47999999999999887765
No 333
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=72.49 E-value=1.4 Score=52.50 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|+||||||+..|.++..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456889999999999999999986654
No 334
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=72.34 E-value=1.4 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..+.+.|.|+||||||+..|.++..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 457899999999999999999987655
No 335
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.11 E-value=3 Score=44.97 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
+.++|+|++|.|||+.++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999888765
No 336
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.10 E-value=2.1 Score=53.17 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
+..+....++|.|++|+|||..++.+.+.+..
T Consensus 186 l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 186 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34556678999999999999999999998865
No 337
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.83 E-value=2.7 Score=48.09 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=27.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
+.+..|+++|.+|+|||+++-.+..+|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999876
No 338
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=71.56 E-value=1.8 Score=42.90 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~ 276 (955)
-|+|.|.+|||||+..+.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 579999999999998887643
No 339
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.31 E-value=3.7 Score=47.06 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.+|++.|++|+|||..++.+-+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46899999999999999999988874
No 340
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=71.01 E-value=2.3 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.-|+|-|--|||||+.++.+.++|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999999984
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=70.98 E-value=1.6 Score=48.23 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
++..-|+|+|.+|||||+.++.+.+.|
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 345689999999999999998875543
No 342
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=70.85 E-value=2.5 Score=48.71 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.2
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
.....|++.|-+|||||+.++.+.++|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44678999999999999999999998864
No 343
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.67 E-value=2 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.9
Q ss_pred CceeE--EEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQS--IIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~Qs--IiisGESGAGKTe~~K~il~y 277 (955)
..... |.|.|+||||||+..+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 44566 899999999999999988643
No 344
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=70.65 E-value=3.1 Score=46.47 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=27.6
Q ss_pred chhH-HHHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 Hiya-vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||. ++.......+..+.|-+|+--|.+|||||.|+
T Consensus 66 ~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 3454 34455556666788999999999999999887
No 345
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.44 E-value=1.9 Score=48.95 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.++.++|.|.+|||||+..+.++..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~ 80 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR 80 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47889999999999999988888776553
No 346
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=69.97 E-value=2 Score=50.63 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+-|.|++|||||+..|.|.-.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4568899999999999999999976553
No 347
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=69.83 E-value=2.5 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~y 277 (955)
.+..|+|.|++|+|||..+|.+...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999988664
No 348
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=69.81 E-value=2.3 Score=47.44 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...+.+.|.|.||||||+..+.|+..+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc
Confidence 356799999999999999998887543
No 349
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=69.67 E-value=2.6 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|.|.|+||||||+..+.|+..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578899999999999999887644
No 350
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=69.62 E-value=2.3 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...+.+.|.|+||||||+..+.|+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 3467899999999999998888754
No 351
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.53 E-value=1.1 Score=47.34 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+..-|+|.|-.|||||+.++.+.++|
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999887776
No 352
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=69.52 E-value=6.8 Score=42.18 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=36.5
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 212 P~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+|..+++ +++..+..+......|..+ =..|+..++.. ++.+++.+++|+|||.+.-..+-.+
T Consensus 7 ~f~~~~l-~~~~~~~l~~~g~~~~~~~--Q~~~i~~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 7 NFNELNL-SDNILNAIRNKGFEKPTDI--QMKVIPLFLND--EYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CGGGSSC-CHHHHHHHHHHTCCSCCHH--HHHHHHHHHHT--CSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred chhhcCC-CHHHHHHHHHcCCCCCCHH--HHHHHHHHhCC--CCCEEEECCCCChHHHHHHHHHHHH
Confidence 4555554 3444444444333333333 33456666654 3679999999999999876554433
No 353
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=69.23 E-value=5.7 Score=40.53 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=39.7
Q ss_pred cCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHH-HHHHHHh
Q 002188 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (955)
Q Consensus 211 NP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~-il~yL~~ 280 (955)
.+|..+++ ++...+.........|. .+=..|+..++.. +.+++.+++|+|||.+.-+ +++.+..
T Consensus 25 ~~f~~~~l-~~~l~~~l~~~~~~~~~--~~Q~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 25 TRFSDFPL-SKKTLKGLQEAQYRLVT--EIQKQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp SBGGGSCC-CHHHHHHHHHTTCCBCC--HHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHhhcCC-CHHHHHHHHHCCCCCCC--HHHHHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 45666664 45555555544443443 3445566666543 4599999999999998655 4555543
No 354
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=69.17 E-value=2.5 Score=52.51 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+++|.|++|+|||+.++.+-+.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999988875
No 355
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=69.14 E-value=2.2 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4578899999999999999999876553
No 356
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=69.09 E-value=1.3 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..+.+.|.|+||||||+..|.++.++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457899999999999999999876554
No 357
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=68.69 E-value=4.1 Score=44.21 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
..+.+...++..+++++|+.|.|||++++.+.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455566666889999999999999999998774
No 358
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.62 E-value=2.2 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+.+|+|.|++|+|||..++.+.+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999887765
No 359
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=68.60 E-value=1.5 Score=52.06 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=24.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+..+.+.|.|+||||||+..|.++.++.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4578999999999999999999876653
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=68.40 E-value=2.7 Score=39.71 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999877665
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.31 E-value=2.1 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+..|+|.|+||+|||+.++.+...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456789999999999999999986653
No 362
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=68.31 E-value=17 Score=29.51 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=41.5
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecCC--eeEEEcCCCcEEEEeCCCcccCC
Q 002188 117 KKKLQSWFQLPNGNWELGKILSISGT--ESVISLPEGKVLKVKSENLVSAN 165 (955)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~~--~~~v~~~~g~~~~v~~~~~~~~n 165 (955)
.+|..|.+...++-|-+|+|++++.. ...|...||....+...++.+..
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAA 55 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEECS
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccccc
Confidence 46778999999999999999998654 68899999999999888887654
No 363
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=68.12 E-value=2.1 Score=48.42 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHHHHc--CceeEEEEcCCCCCChhHHHHHHH
Q 002188 243 TAIREMIRD--EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 243 ~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il 275 (955)
..+..|+.. .....++|.|+||||||+.++.++
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 344555543 346889999999999999988764
No 364
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=68.02 E-value=5.3 Score=43.91 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=32.3
Q ss_pred HHHHHHHHH-HcCceeEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 002188 241 TDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (955)
Q Consensus 241 A~~Ay~~m~-~~~~~QsIiisGESGAGKTe~~K~il~yL~~~~~ 283 (955)
+..+..++. ...+...|.|+|.+|||||+.+..++..+...++
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 334444443 3466789999999999999999999998876543
No 365
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=67.94 E-value=6.6 Score=34.54 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=40.1
Q ss_pred cCccccccccccccccCcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCC
Q 002188 103 HTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (955)
Q Consensus 103 ~~~~~w~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 166 (955)
.++..|.-... |+-.| .++.|-+|+|.++.+ +..+|...||.+.+|...++.|+..
T Consensus 17 ~~~~~f~vGd~-----VlArW---~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 17 GGSSEFQINEQ-----VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp ----CCCTTCE-----EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred cCCcccccCCE-----EEEEe---CCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCCh
Confidence 34556655433 34458 788899999999987 4677888899999999999988654
No 366
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=67.87 E-value=4 Score=48.41 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=26.1
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
++.++|+|..|+|||++.+.++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999988644
No 367
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=67.71 E-value=2.2 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
+-+=.|+|.|+||||||+..+.++.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhC
Confidence 3455689999999999998887754
No 368
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=67.65 E-value=2.4 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+..|+|.|++|+|||+.+|.|...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999987764
No 369
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=67.52 E-value=2.3 Score=41.68 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.2
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.||+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999998877764
No 370
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.23 E-value=2.9 Score=51.17 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~ 279 (955)
++++.|++|.|||+.++.+-+++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999988873
No 371
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=67.14 E-value=3.7 Score=42.61 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
.+.-.++++|-.|+|||+.+..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4567789999999999999999999998
No 372
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=66.93 E-value=3.2 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
..|++.|++|.|||+.++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 489999999999999999887654
No 373
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=66.92 E-value=3.6 Score=45.86 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHH-cC--ceeEEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 243 TAIREMIR-DE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 243 ~Ay~~m~~-~~--~~QsIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
..+..++. .+ ....++|.|++|+|||+.+.+++..++..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44555554 22 45789999999999999999998877653
No 374
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.78 E-value=2.9 Score=48.89 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHHc--CceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 245 IREMIRD--EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 245 y~~m~~~--~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
...++.. .+...++|.|++|||||+.++.++..+..
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3445443 45688999999999999999998776543
No 375
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=66.78 E-value=2.3 Score=46.07 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
.-+=.|+|.|+||||||+..+.++.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999998764
No 376
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=66.69 E-value=3.1 Score=39.09 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|++.|.+|+|||+....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999998776654
No 377
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.51 E-value=7.6 Score=42.77 Aligned_cols=34 Identities=35% Similarity=0.501 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH-HHHH
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYL 278 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yL 278 (955)
..|+..++.. +.+|+.+++|||||.+.-+. ++.+
T Consensus 68 ~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 68 QRAILPCIKG---YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp HHHHHHHHTT---CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred HHHhHHHhCC---CCEEEECCCCCcccHHHHHHHHHHH
Confidence 3555555543 34999999999999885443 4444
No 378
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.41 E-value=3 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
-++++.|++|+|||+.++.+-+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 589999999999999999887766
No 379
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.23 E-value=5.9 Score=39.94 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=37.6
Q ss_pred cCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH-HHHH
Q 002188 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYL 278 (955)
Q Consensus 211 NP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yL 278 (955)
..|..+++ +++..+.....+...|..+ =..|+..+... +.+++.+++|||||.+.-+. ++.+
T Consensus 4 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 4 TQFTRFPF-QPFIIEAIKTLRFYKPTEI--QERIIPGALRG---ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CCGGGSCC-CHHHHHHHHHTTCCSCCHH--HHHHHHHHHHT---CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCHhhCCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 44666654 4566666655444444433 34555555543 56899999999999885443 4443
No 380
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=66.19 E-value=5.5 Score=45.42 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=37.4
Q ss_pred eecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHH
Q 002188 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (955)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 273 (955)
.+.+|..+++ +++..+.........| +.+=..|+..++.. .++.+|+.|++|||||++.-+
T Consensus 90 ~~~~f~~~~l-~~~l~~~l~~~g~~~p--~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 90 SVKSFEELRL-KPQLLQGVYAMGFNRP--SKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp CCCCSGGGTC-CHHHHHHHHHTTCCSC--CHHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHHH
T ss_pred CcCCHHHcCC-CHHHHHHHHHcCCCCC--CHHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHHH
Confidence 4455555554 4444444443333333 34445666666653 468999999999999988543
No 381
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=66.02 E-value=2.9 Score=39.17 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998866654
No 382
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.78 E-value=3.1 Score=39.91 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
--|+|.|.+|+|||+..+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999998877764
No 383
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=65.77 E-value=3.4 Score=42.86 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=24.5
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.|+..+...+ .+++.|+.|+|||..+-.++..+
T Consensus 100 ~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 100 KALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 4555555443 38999999999999988777654
No 384
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=65.48 E-value=3.6 Score=45.60 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=25.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
....++|.|++|+|||+.+.+++..++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g 89 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG 89 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 457899999999999999999987776543
No 385
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=65.47 E-value=3.4 Score=38.86 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|++.|.+|+|||+....++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766554
No 386
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.36 E-value=3.2 Score=47.49 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
+..|+|.|.+|+|||+++-.+..+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999998654
No 387
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.31 E-value=15 Score=31.37 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=39.0
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCCC
Q 002188 117 KKKLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANPD 167 (955)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np~ 167 (955)
+.|..|-..-.++.|-+|+|.++.+ +..+|...|+...+|+..+|.|..+.
T Consensus 11 kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 11 KAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 62 (74)
T ss_dssp CTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGG
T ss_pred CCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChh
Confidence 3344544444588899999999976 67888888888888999988887654
No 388
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=65.26 E-value=3.8 Score=44.53 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
...+.|+|.|.+|+|||+.+..+....+
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999998887765543
No 389
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.26 E-value=8.9 Score=42.11 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=36.3
Q ss_pred ecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
.++|..+++ +++..+.....+...|..|. ..|+..+... +.+++.+++|+|||.+.-..+
T Consensus 20 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYL-KRELLMGIFEAGFEKPSPIQ--EEAIPVAITG---RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhcC---CCEEEECCCCcHHHHHHHHHH
Confidence 345777765 44555554444444344433 3455555543 349999999999998765544
No 390
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=65.08 E-value=2.8 Score=50.13 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..+.+.|.|+||||||+..|.|.-.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 367899999999999999999865543
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=65.06 E-value=6.5 Score=43.40 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHH-cCceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 239 AITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 239 avA~~Ay~~m~~-~~~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
..|......+.. .+..-.|+|+|..|+|||+.+..+..+|+..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g 107 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 445555555543 34567899999999999999999998887543
No 392
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=64.96 E-value=11 Score=38.69 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=40.5
Q ss_pred eecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH-HHHHH
Q 002188 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLA 279 (955)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yL~ 279 (955)
.+..|..+++ +++..+.....+...|. .+=..|+..+... +.+++.+++|||||.+.-+. +.++.
T Consensus 27 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~--~~Q~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 27 PVLNFYEANF-PANVMDVIARQNFTEPT--AIQAQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCSSTTTTTC-CHHHHHHHHTTTCCSCC--HHHHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHhhcCC-CHHHHHHHHHCCCCCCC--HHHHHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 3455555554 56666666554444343 3445566666543 46999999999999986544 45554
No 393
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=64.89 E-value=3.3 Score=40.28 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
--|++.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 459999999999999887764
No 394
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=64.42 E-value=2.7 Score=49.42 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..+.+.|.|+||||||+..|.|.-.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999998865543
No 395
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.36 E-value=7.2 Score=45.48 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
....|+|.|..|+|||+++-.+..+|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999998653
No 396
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.19 E-value=4.4 Score=49.12 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHH-HHHHHHHh
Q 002188 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK-IAMQYLAA 280 (955)
Q Consensus 213 ~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K-~il~yL~~ 280 (955)
|..+|+ .+...+.++..+. .+++.+=..|+..+... ++.+|++|++|||||..+- .+++.+..
T Consensus 3 f~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 3 VDELRV-DERIKSTLKERGI--ESFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp GGGCCS-CHHHHHHHHHTTC--CBCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HhhcCC-CHHHHHHHHHCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 444553 4556666655333 34455556666653333 6889999999999999884 44566653
No 397
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=64.15 E-value=6.7 Score=43.31 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
.-.|.|.|.+|||||+....++.++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 57899999999999999999998886543
No 398
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.01 E-value=3.7 Score=38.72 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998776553
No 399
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=64.00 E-value=3.6 Score=40.21 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=.|+|.|.+|+|||+....++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 369999999999998776654
No 400
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.92 E-value=5.7 Score=44.97 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 HiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
-||.-........+ .+.|-||+--|.+|||||.|+
T Consensus 124 ~Vf~~v~~lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 124 DVFKEVGQLVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 34443333333433 688999999999999999998
No 401
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.89 E-value=5.4 Score=44.35 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=24.8
Q ss_pred hhHHH-HHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 237 VYAIT-DTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 237 iyavA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
||..+ .......+ .+.|-||+--|.+|||||.|+
T Consensus 76 vy~~~~~~lv~~~l-~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 76 VFKCLGENILQNAF-DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhhHHHHHHHh-CCceeEEEeeCCCCCCCceEE
Confidence 44433 33333333 688999999999999999987
No 402
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=63.76 E-value=2.2 Score=42.50 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.7
Q ss_pred CceeEEEEcCCCCCChhHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (955)
.....|+|.|.+|||||+..+.++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 445679999999999998877653
No 403
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=63.62 E-value=3.8 Score=39.28 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.2
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.=.|+|.|.+|+|||+....++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999998776654
No 404
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=63.58 E-value=3.9 Score=45.03 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=24.6
Q ss_pred HHHHHHHc--CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 244 Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
....++.. ...+.++|.|++|+|||+.+.++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455532 3568899999999999998887654
No 405
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=63.51 E-value=6.2 Score=39.19 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002188 894 HRAAVVIQRQIKSRVARQKLKN 915 (955)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~ 915 (955)
..||.+||.+||.|+.|+.++.
T Consensus 130 ~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 130 EVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 3477777777777777665544
No 406
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=63.43 E-value=2.2 Score=43.99 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=31.2
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHHhccCC----CCchhhhhh-----hhHHHHhhcCc
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLAALGGG----SGIEYEILK-----TNPILEAFGNA 304 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~~~~~~----~~i~~~il~-----snpiLEAFGNA 304 (955)
=+|-++|-.|||||+.++++-+ + +-. ..+..++++ -..|.+.||..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~---g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~ 64 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-R---GASLVDTDLIAHRITAPAGLAMPAIEQTFGPA 64 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCcEEECcHHHHHHhcCCcHHHHHHHHHhChh
Confidence 4799999999999999987655 2 211 123334442 24688899975
No 407
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=63.35 E-value=3.9 Score=38.38 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.0
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 359999999999998765544
No 408
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=63.26 E-value=3.3 Score=41.26 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
..|+..++. ++.+++.+++|+|||..+-.++..+.
T Consensus 39 ~~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 39 MEVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp HHHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345555553 35699999999999999988876554
No 409
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.26 E-value=3.5 Score=41.91 Aligned_cols=19 Identities=32% Similarity=0.435 Sum_probs=15.7
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIA 274 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~i 274 (955)
-++|+|..|||||..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4789999999999987443
No 410
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.22 E-value=5.3 Score=44.29 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=25.0
Q ss_pred chhHH-HHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||.- +.......+ .+.|-||+--|.+|||||.|+
T Consensus 77 ~Vy~~~~~plv~~~l-~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 77 EMYQALILPLVDKLL-EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTHHHHHHHH-HTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhccchhhHhh-CCCceEEEEecCCCCCCCeEE
Confidence 34433 333333333 578999999999999999997
No 411
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=62.96 E-value=10 Score=31.93 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=36.2
Q ss_pred CcEEEEecCCCCEEeEEEEEecCC-eeEEEcCCCcEEEEeCCCcccCCCC
Q 002188 119 KLQSWFQLPNGNWELGKILSISGT-ESVISLPEGKVLKVKSENLVSANPD 167 (955)
Q Consensus 119 ~~~vw~~~~~~~~~~~~v~~~~~~-~~~v~~~~g~~~~v~~~~~~~~np~ 167 (955)
|+-.| .++.|-+|+|.++.++ ..+|...||.+.+|...++.|...+
T Consensus 13 vmArW---~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 13 VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC--
T ss_pred EEEEc---CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCcc
Confidence 33457 7888999999999874 6778888899999999999886543
No 412
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=62.84 E-value=5.7 Score=43.64 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.8
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEEECCCCCCCceEe
Confidence 678999999999999999987
No 413
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=62.83 E-value=2 Score=44.78 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 002188 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il~yL~~~ 281 (955)
.+.|.|+||||||+..+.|.-.+...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC
Confidence 34689999999999999887766543
No 414
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=62.80 E-value=4.1 Score=38.42 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||+....++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998766654
No 415
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=62.73 E-value=4 Score=38.67 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.1
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999998766553
No 416
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.70 E-value=7.3 Score=39.94 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=20.0
Q ss_pred HHHHHHHHcCceeEEEEcCCCCCChhHHHHH
Q 002188 243 TAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (955)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~ 273 (955)
.|+..++.. +.+++.+++|||||.+.-.
T Consensus 59 ~ai~~i~~~---~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 59 RAIIPCIKG---YDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp HHHHHHHTT---CCEEECCCSSHHHHHHHHH
T ss_pred HHHHHHhCC---CCEEEECCCCCcHHHHHHH
Confidence 455555543 4499999999999987433
No 417
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=62.56 E-value=4.1 Score=38.53 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIA 274 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~i 274 (955)
-|++.|.+|+|||+....+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999877665
No 418
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=62.55 E-value=2.1 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il 275 (955)
..+.+.|.|+||||||+..+.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 46888999999999999998775
No 419
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=62.36 E-value=3.1 Score=49.72 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il~y 277 (955)
|.|.|+||||||+..+.|+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 999999999999999988764
No 420
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=62.30 E-value=4.9 Score=40.09 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+-++|+|..|||||+.+..++.-+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999985554433
No 421
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.19 E-value=4.1 Score=38.93 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.2
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766653
No 422
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=61.97 E-value=6 Score=43.79 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=25.5
Q ss_pred chhHH-HHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||.- +......++ .+.|-||+--|.+|||||.|+
T Consensus 66 ~vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 66 AVYQACVQPLLEAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTHHHHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhcCeeEEEecccCCCceEee
Confidence 44543 333344444 678999999999999999997
No 423
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=61.93 E-value=7.7 Score=43.85 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=47.5
Q ss_pred eEeecCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 207 LVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 207 LiavNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
|-.+||...+++- .-...+.-+|...|.--.+-|-+.|-|.+|+|||+.++.|.+..+.
T Consensus 143 l~Pi~P~~R~~le---------------~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 143 LTPDYPRERFILE---------------TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp SCEECCCSBCCCC---------------CSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCchhhcccc---------------ccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 4467888877542 1234677799988888899999999999999999999999888765
No 424
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=61.83 E-value=3.8 Score=39.23 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=17.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.=-|+|.|.+|+|||+....++
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998776654
No 425
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=61.81 E-value=9.1 Score=40.05 Aligned_cols=37 Identities=19% Similarity=0.456 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH-HHHHHh
Q 002188 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (955)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yL~~ 280 (955)
=..|+..++.. +.+|+.+++|||||.+.-+. ++.+..
T Consensus 81 Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 81 QHKSIRPLLEG---RDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHHHHHT---CCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 34555555554 34999999999999986654 445543
No 426
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=61.80 E-value=4.6 Score=46.25 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.4
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.|+|.|++|+|||+.+..+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999988877654
No 427
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=61.80 E-value=4.1 Score=38.54 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998776654
No 428
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=61.61 E-value=30 Score=29.57 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred ccCcEEEEecCCCCEEeEEEEEec--CCeeEEEcCCCcEEEEeCCCcccC
Q 002188 117 KKKLQSWFQLPNGNWELGKILSIS--GTESVISLPEGKVLKVKSENLVSA 164 (955)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~--~~~~~v~~~~g~~~~v~~~~~~~~ 164 (955)
.+|..|.+...+|-|-+|+|++++ .+...|...|+....+.-.++.++
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 77 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCCC
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccccc
Confidence 456689999999999999999886 456889999999999988888764
No 429
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=61.44 E-value=4.7 Score=50.52 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHH--HHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIA--MQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~i--l~yL~~~~ 282 (955)
..+.++|+|++|||||+..|.+ +.+++..+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999988 45555443
No 430
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=61.12 E-value=4.1 Score=40.15 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHHHcCceeEEEEcCCCCCChhHHHHHHH
Q 002188 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il 275 (955)
+.+.+-...+.=-|++.|.+|+|||...+.+.
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHh
Confidence 33333223334479999999999998877654
No 431
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.77 E-value=5.8 Score=44.21 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.......+ .+.|-||+--|.+|||||.|+
T Consensus 94 ~plv~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 94 KDVVSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 33444444 678999999999999999987
No 432
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=60.68 E-value=6.5 Score=43.92 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=25.5
Q ss_pred CchhHH-HHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 235 PHVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 235 PHiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
-.||.- +.......+ .+.|-||+--|.+|||||.|+
T Consensus 66 ~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 66 EKVYNEAAKSIVTDVL-AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTHHHHHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhhhhHHHHHh-CCCceEEEeecCCCCCCceEE
Confidence 345543 233333333 678999999999999999987
No 433
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=60.65 E-value=7.1 Score=43.74 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=25.5
Q ss_pred chhHH-HHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||.- +.......+ .+.|-||+--|.+|||||.|+
T Consensus 83 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 83 DVYSVVVSPLIEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEeecCCCCCcceec
Confidence 45543 334444444 578999999999999999886
No 434
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=60.62 E-value=4.5 Score=40.53 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCChhHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~ 276 (955)
.-.|+|.|.+|+|||.....+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999988776643
No 435
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.50 E-value=5.6 Score=44.22 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.5
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL~~~~ 282 (955)
....|+|.|++|+|||+.+.+++..++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g 91 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG 91 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 467899999999999999999988776543
No 436
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=60.38 E-value=4.7 Score=38.78 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 459999999999998766654
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=60.37 E-value=4.2 Score=41.81 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.=-|+|.|.+|+|||+....++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHc
Confidence 3469999999999999887765
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=60.23 E-value=4.6 Score=39.14 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
..-|+|.|.+|+|||+..+.++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999998776664
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=60.22 E-value=4.5 Score=38.72 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il 275 (955)
+.--|+|.|.+|+|||+....++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34469999999999998776653
No 440
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=60.21 E-value=4.8 Score=38.41 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999998776654
No 441
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=60.07 E-value=4.3 Score=38.37 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||.....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999998766654
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=60.02 E-value=4.9 Score=40.10 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=17.6
Q ss_pred cCceeEEEEcCCCCCChhHHHHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K~il 275 (955)
..+.=-|+|.|.+|+|||.....++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445579999999999998776554
No 443
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=59.94 E-value=5.5 Score=48.14 Aligned_cols=63 Identities=19% Similarity=0.393 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHH-HHHHHh
Q 002188 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (955)
Q Consensus 213 ~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i-l~yL~~ 280 (955)
|..+++ .+...+.++..+. .+++.+=..|+..+... ++.+||+|++|||||...-+. ++.+..
T Consensus 10 ~~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 10 IEDLKL-PSNVIEIIKKRGI--KKLNPPQTEAVKKGLLE--GNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp GGGSSS-CHHHHHHHHTTSC--CBCCHHHHHHHHTTTTT--TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 444543 4555555554332 34455556666653333 688999999999999998544 456553
No 444
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=59.91 E-value=4.8 Score=38.87 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=17.0
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||+....++
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998776664
No 445
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=59.90 E-value=7.7 Score=44.46 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=25.1
Q ss_pred chhHHH-HHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAIT-DTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 HiyavA-~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||.-. .......+ .+.|-||+--|.+|||||.|+
T Consensus 119 ~Vy~~~~~plv~~~l-~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 119 HVYDSLGEEFLDHNF-EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhhhhHHHHhh-cCCceEEEEeCCCCCCCCEEe
Confidence 345433 23333333 688999999999999999987
No 446
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.89 E-value=4.9 Score=38.08 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCChhHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIA 274 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~i 274 (955)
=-|++.|.+|+|||.....+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45999999999999876655
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=59.86 E-value=4.1 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYLA 279 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL~ 279 (955)
+.+.|.|+|||||||..|.|.-.+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5589999999999999998865443
No 448
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=59.81 E-value=7.3 Score=43.40 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=25.1
Q ss_pred chhHH-HHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||.- +.......+ .+.|-||+--|.+|||||.|+
T Consensus 71 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 71 DVYRSVVCPILDEVI-MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHHHHHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhHHHHh-CCCceEEEEeCCCCCCCceEE
Confidence 34443 333344444 578999999999999999887
No 449
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=59.78 E-value=3.9 Score=39.70 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||+....++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 49999999999998776653
No 450
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=59.73 E-value=4.9 Score=37.84 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.2
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998776654
No 451
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=59.71 E-value=4.6 Score=38.42 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||.....++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999998766553
No 452
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=59.69 E-value=4.8 Score=39.16 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 469999999999998877664
No 453
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=59.62 E-value=5.9 Score=44.06 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.7
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCceeee
Confidence 678999999999999999987
No 454
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=59.57 E-value=6.5 Score=43.71 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=26.4
Q ss_pred CchhH-HHHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 235 PHVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 235 PHiya-vA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
-.||. ++.......+ .+.|-||+--|.+|||||.|+
T Consensus 62 ~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 62 SDIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCcceEEEECCCCCCcceEe
Confidence 44555 3444444444 678999999999999999887
No 455
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=59.49 E-value=5 Score=37.77 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.6
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAM 275 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il 275 (955)
|++.|.+|+|||.....++
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999998877664
No 456
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=59.37 E-value=5 Score=38.81 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.1
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999998765553
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=59.35 E-value=4 Score=47.98 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|++||||||..|.|.-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999987654
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=59.34 E-value=4 Score=48.78 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 253 ~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
..+.+.|.|++|||||+..|.|.-.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999986544
No 459
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.32 E-value=5.7 Score=45.55 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~yL 278 (955)
...|++.|.+|+|||+.++.+-+.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999998876554
No 460
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.21 E-value=6.4 Score=43.84 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 242 DTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.......+ .+.|-||+--|.+|||||.|+
T Consensus 93 ~~lv~~~l-~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 93 KDVVSQAL-DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHh-CCCceEEEEECCCCCCCceEe
Confidence 33444444 678999999999999999987
No 461
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=59.11 E-value=5.1 Score=38.68 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=17.4
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766654
No 462
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=59.04 E-value=4.5 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
...+.++|+|++|||||+..|.+.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3568899999999999999999864
No 463
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=58.89 E-value=7.2 Score=43.54 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.6
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred cCCeeEEEEeCCCCCCCceEe
Confidence 678999999999999999887
No 464
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.85 E-value=4.3 Score=40.80 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.8
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAM 275 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il 275 (955)
|+|+|-+|||||+-+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999887664
No 465
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=58.75 E-value=5.8 Score=45.03 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.9
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCeeEe
Confidence 688999999999999999997
No 466
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=58.72 E-value=5.1 Score=39.31 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.8
Q ss_pred CceeEEEEcCCCCCChhHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (955)
.+.=-|+|.|.+|+|||.....++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 345579999999999998776544
No 467
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=58.63 E-value=5.1 Score=38.90 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCChhHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~ 276 (955)
=-|+|.|.+|+|||+....++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999987776653
No 468
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=58.54 E-value=4.1 Score=44.37 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHHHHHc--CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 243 TAIREMIRD--EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 243 ~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
.....++.. .....++|.|++|+|||+.+.++...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 334455532 34678999999999999988877644
No 469
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=58.42 E-value=10 Score=40.37 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcC--ceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 240 ITDTAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 240 vA~~Ay~~m~~~~--~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
.+-.+....+... +.-+|+|.|+.|+|||..++.|++++
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3334455555543 24589999999999999999888764
No 470
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=58.39 E-value=5.3 Score=38.26 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.1
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|++.|.+|+|||+....++
T Consensus 11 ~~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999998766553
No 471
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=58.11 E-value=5.3 Score=39.29 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998766554
No 472
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=58.06 E-value=36 Score=27.38 Aligned_cols=49 Identities=16% Similarity=0.001 Sum_probs=36.9
Q ss_pred cCcEEEEec-CCCCEEeEEEEEecC--CeeEEEcC-CCcEEEEeCCCcccCCC
Q 002188 118 KKLQSWFQL-PNGNWELGKILSISG--TESVISLP-EGKVLKVKSENLVSANP 166 (955)
Q Consensus 118 ~~~~vw~~~-~~~~~~~~~v~~~~~--~~~~v~~~-~g~~~~v~~~~~~~~np 166 (955)
.|..|-.+- .++.|-.|+|.++.+ +.+.|... -|....|+.++|.|..|
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 344555554 478899999999974 67777755 59898999999988754
No 473
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=57.98 E-value=4.4 Score=39.58 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.--|+|.|.+|+|||+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3469999999999999877765
No 474
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=57.88 E-value=4.3 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCChhHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il 275 (955)
...+.+.|.|++|||||+..|.|.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356889999999999999999998
No 475
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=57.82 E-value=4.9 Score=38.84 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+..+.++
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998776653
No 476
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=57.78 E-value=6.8 Score=43.48 Aligned_cols=22 Identities=41% Similarity=0.521 Sum_probs=20.3
Q ss_pred cCceeEEEEcCCCCCChhHHHH
Q 002188 251 DEVNQSIIISGESGAGKTETAK 272 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~K 272 (955)
.+.|-||+--|.+|||||.|+-
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHH
T ss_pred CCcceeEEEeCCCCCCCceEeC
Confidence 6889999999999999999983
No 477
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=57.77 E-value=5.4 Score=38.22 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.7
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.=-|+|.|.+|+|||+....++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 3468999999999998766554
No 478
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=57.75 E-value=6.1 Score=43.87 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.7
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 678999999999999999987
No 479
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=57.66 E-value=5.3 Score=37.81 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||+....++
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999998776553
No 480
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=57.56 E-value=7.3 Score=40.33 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred eeEEEEcCC-CCCChhHHHHHHHHHHHhcc
Q 002188 254 NQSIIISGE-SGAGKTETAKIAMQYLAALG 282 (955)
Q Consensus 254 ~QsIiisGE-SGAGKTe~~K~il~yL~~~~ 282 (955)
-++|+|+|- ||+|||..+-.+++.|...+
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 367888886 99999999999999998865
No 481
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=57.49 E-value=4.7 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCChhHHHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il~y 277 (955)
.+.++|+|++|||||+..|.+.-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 678999999999999999998653
No 482
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.46 E-value=5 Score=43.47 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHHHHHHHc--CceeEEEEcCCCCCChhHHHHHHHH
Q 002188 243 TAIREMIRD--EVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 243 ~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
.....++.. ...+.++|.|++|+|||+.+..+..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555543 3467899999999999998877654
No 483
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=57.42 E-value=2.7 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCCCChhHHHHHHHHH
Q 002188 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (955)
Q Consensus 252 ~~~QsIiisGESGAGKTe~~K~il~y 277 (955)
+..|.|-|.|+||||||+..+.++++
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
No 484
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=57.31 E-value=6.2 Score=38.53 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=20.1
Q ss_pred HcCceeEEEEcCCCCCChhHHHHHHHH
Q 002188 250 RDEVNQSIIISGESGAGKTETAKIAMQ 276 (955)
Q Consensus 250 ~~~~~QsIiisGESGAGKTe~~K~il~ 276 (955)
.....=-|+|.|.+|+|||+....++.
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 334455799999999999987766543
No 485
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=57.22 E-value=5.1 Score=38.19 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCChhHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il 275 (955)
=-|+|.|.+|+|||+....++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999998766554
No 486
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=56.98 E-value=6.7 Score=43.19 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=19.8
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 688999999999999999987
No 487
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.88 E-value=7.9 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCChhHHHHHHHHHH
Q 002188 255 QSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 255 QsIiisGESGAGKTe~~K~il~yL 278 (955)
..|+|.|++|.|||..++.+-+.+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 589999999999999888775544
No 488
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=56.71 E-value=1.7 Score=47.43 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.2
Q ss_pred HHcCceeEEEEcCCCCCChhHHHHHHHHHH
Q 002188 249 IRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (955)
Q Consensus 249 ~~~~~~QsIiisGESGAGKTe~~K~il~yL 278 (955)
+.-...+.+.|.|.||||||+..+.|+..+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 333457899999999999999999886544
No 489
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.54 E-value=7.5 Score=43.49 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=25.4
Q ss_pred chhHH-HHHHHHHHHHcCceeEEEEcCCCCCChhHHH
Q 002188 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 271 (955)
.||.- +......++ .+.|-||+--|.+|||||.|+
T Consensus 84 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 84 ELYDETFRPLVDSVL-QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTHHHHHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCeeeEEeecCCCCCCCEeE
Confidence 34443 334444444 678999999999999999987
No 490
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=56.46 E-value=4.9 Score=38.93 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.3
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 002188 257 IIISGESGAGKTETAKIAM 275 (955)
Q Consensus 257 IiisGESGAGKTe~~K~il 275 (955)
|+|.|.+|+|||.....++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999998776654
No 491
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=56.42 E-value=6 Score=38.67 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.6
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||+....++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 58999999999998766553
No 492
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=56.38 E-value=7.4 Score=43.22 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.6
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 578999999999999999987
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=56.38 E-value=4.8 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.589 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.=-|+|.|.+|||||+....++
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3469999999999999877665
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=56.27 E-value=4.9 Score=37.95 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.4
Q ss_pred EEEcCCCCCChhHHHHHH
Q 002188 257 IIISGESGAGKTETAKIA 274 (955)
Q Consensus 257 IiisGESGAGKTe~~K~i 274 (955)
|++.|.+|+|||...+.+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999876554
No 495
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.09 E-value=6.8 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.6
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHH
T ss_pred cCCceeEEeecCCCCCCCeEe
Confidence 578999999999999999987
No 496
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=56.09 E-value=6 Score=38.52 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.0
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~il 275 (955)
-|+|.|.+|+|||+....++
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999998776654
No 497
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=56.02 E-value=6.8 Score=45.20 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHcCceeEEEEcCCCCCChhHHHHHHHHHHHh
Q 002188 238 YAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (955)
Q Consensus 238 yavA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~il~yL~~ 280 (955)
..+.-++...|..-.+.|.++|.|.||+|||+.+..++.....
T Consensus 135 l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 135 LETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp ECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 4445567888887788999999999999999999999888764
No 498
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=55.99 E-value=6.1 Score=37.95 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.2
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 002188 256 SIIISGESGAGKTETAKIA 274 (955)
Q Consensus 256 sIiisGESGAGKTe~~K~i 274 (955)
-|++.|.+|+|||+....+
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999876554
No 499
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=55.97 E-value=6 Score=44.23 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.7
Q ss_pred cCceeEEEEcCCCCCChhHHH
Q 002188 251 DEVNQSIIISGESGAGKTETA 271 (955)
Q Consensus 251 ~~~~QsIiisGESGAGKTe~~ 271 (955)
.+.|-||+--|.+|||||.|+
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 688999999999999999987
No 500
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=55.92 E-value=6.1 Score=38.54 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=17.9
Q ss_pred eeEEEEcCCCCCChhHHHHHHH
Q 002188 254 NQSIIISGESGAGKTETAKIAM 275 (955)
Q Consensus 254 ~QsIiisGESGAGKTe~~K~il 275 (955)
.=-|+|.|.+|+|||.....++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999998766543
Done!