Query 002190
Match_columns 955
No_of_seqs 163 out of 437
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 18:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 1E-167 2E-172 1342.9 77.9 927 1-939 1-945 (1082)
2 COG5101 CRM1 Importin beta-rel 100.0 1.1E-74 2.5E-79 620.2 57.6 803 3-930 12-911 (1053)
3 KOG2020 Nuclear transport rece 100.0 3E-46 6.4E-51 443.7 49.4 798 3-930 9-891 (1041)
4 KOG4541 Nuclear transport rece 100.0 7.4E-38 1.6E-42 333.1 28.8 534 385-942 34-643 (748)
5 KOG2022 Nuclear transport rece 99.8 6E-15 1.3E-19 167.9 60.7 806 3-936 5-872 (982)
6 KOG2021 Nuclear mRNA export fa 99.8 3.4E-14 7.3E-19 158.6 54.6 261 4-293 2-275 (980)
7 PF08767 CRM1_C: CRM1 C termin 99.6 2.9E-16 6.2E-21 171.1 8.4 156 752-931 43-198 (319)
8 KOG2171 Karyopherin (importin) 99.3 1.4E-07 3E-12 112.6 49.3 149 3-157 2-152 (1075)
9 KOG2023 Nuclear transport rece 99.2 1.8E-07 4E-12 104.5 36.3 572 6-769 11-652 (885)
10 KOG1991 Nuclear transport rece 99.2 5.6E-05 1.2E-09 89.3 62.1 161 19-192 17-191 (1010)
11 PF08389 Xpo1: Exportin 1-like 99.0 2.3E-09 5E-14 104.5 12.6 147 96-269 1-148 (148)
12 KOG2081 Nuclear transport regu 98.9 3.3E-07 7.1E-12 101.8 22.9 309 24-377 2-322 (559)
13 KOG1992 Nuclear export recepto 98.8 0.001 2.2E-08 77.4 53.2 177 7-191 4-194 (960)
14 PF03810 IBN_N: Importin-beta 98.2 4.3E-06 9.3E-11 71.2 7.9 65 26-90 1-77 (77)
15 KOG1241 Karyopherin (importin) 98.0 0.024 5.3E-07 65.8 35.0 219 17-276 12-248 (859)
16 KOG1993 Nuclear transport rece 97.5 0.0013 2.9E-08 75.9 13.7 159 18-190 12-182 (978)
17 COG5656 SXM1 Importin, protein 97.4 0.5 1.1E-05 55.2 48.4 132 19-153 16-156 (970)
18 COG5657 CSE1 CAS/CSE protein i 96.8 0.053 1.1E-06 64.5 18.3 147 1-155 1-155 (947)
19 KOG2274 Predicted importin 9 [ 94.0 19 0.00042 43.8 51.2 131 18-154 16-159 (1005)
20 KOG4541 Nuclear transport rece 85.6 76 0.0016 36.6 25.7 24 532-556 355-378 (748)
21 COG5215 KAP95 Karyopherin (imp 84.3 89 0.0019 36.3 49.6 107 17-130 16-140 (858)
22 PF03378 CAS_CSE1: CAS/CSE pro 72.6 1.9E+02 0.0041 33.4 18.1 112 645-771 81-194 (435)
23 PF03224 V-ATPase_H_N: V-ATPas 57.7 1.7E+02 0.0037 32.1 13.4 172 28-213 93-269 (312)
24 PF12460 MMS19_C: RNAPII trans 46.5 5E+02 0.011 29.7 16.9 142 123-298 271-412 (415)
25 PF13646 HEAT_2: HEAT repeats; 43.0 83 0.0018 26.6 6.5 87 7-107 1-87 (88)
26 KOG1824 TATA-binding protein-i 40.0 8.7E+02 0.019 30.7 15.7 196 5-212 856-1053(1233)
27 PF11864 DUF3384: Domain of un 40.0 6.1E+02 0.013 29.6 15.0 207 696-943 41-256 (464)
28 PF01602 Adaptin_N: Adaptin N 39.9 2.9E+02 0.0064 32.6 12.8 123 16-150 52-179 (526)
29 KOG4646 Uncharacterized conser 39.6 62 0.0013 30.4 5.1 42 4-45 15-56 (173)
30 PF14225 MOR2-PAG1_C: Cell mor 38.8 3.6E+02 0.0077 28.8 11.5 145 178-335 5-154 (262)
31 KOG2171 Karyopherin (importin) 37.1 1E+03 0.022 30.6 28.4 291 605-934 99-421 (1075)
32 PF13646 HEAT_2: HEAT repeats; 34.6 1.5E+02 0.0032 25.0 6.7 56 6-63 32-87 (88)
33 PF08506 Cse1: Cse1; InterPro 32.8 7.6E+02 0.016 27.8 20.3 57 580-636 133-192 (370)
34 PF13513 HEAT_EZ: HEAT-like re 31.7 69 0.0015 24.5 3.7 55 867-929 1-55 (55)
35 PF12922 Cnd1_N: non-SMC mitot 31.5 83 0.0018 31.1 5.2 68 261-328 97-165 (171)
36 PF08623 TIP120: TATA-binding 30.1 50 0.0011 32.5 3.2 52 868-930 42-93 (169)
37 COG5656 SXM1 Importin, protein 29.0 1.2E+03 0.025 28.8 17.7 60 73-133 450-509 (970)
38 KOG0889 Histone acetyltransfer 27.8 1.5E+03 0.032 33.4 16.7 113 805-934 668-799 (3550)
39 PTZ00429 beta-adaptin; Provisi 25.1 1.4E+03 0.031 28.5 15.0 126 17-152 79-208 (746)
40 PF01603 B56: Protein phosphat 22.5 1.2E+03 0.026 26.7 16.7 148 7-158 135-310 (409)
41 cd03565 VHS_Tom1 VHS domain fa 22.0 4.6E+02 0.01 24.9 8.1 61 47-108 47-111 (141)
42 PF12755 Vac14_Fab1_bd: Vacuol 21.6 3.5E+02 0.0076 23.9 6.7 69 245-324 27-95 (97)
43 PF00790 VHS: VHS domain; Int 20.7 7.2E+02 0.016 23.4 11.1 59 50-108 53-114 (140)
44 PF14225 MOR2-PAG1_C: Cell mor 20.6 5.5E+02 0.012 27.4 9.1 106 149-279 153-259 (262)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-167 Score=1342.87 Aligned_cols=927 Identities=50% Similarity=0.826 Sum_probs=883.1
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-cCCCHHHHHH
Q 002190 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLD 79 (955)
Q Consensus 1 ~~~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~k~~ 79 (955)
|+++++||.+|..+|.++|+.+|.+||+.|.+|.++|+++++|+.+|++++.+|.+..|++.|.+.+.+ ..+|.++|.+
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrld 80 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLD 80 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh----hhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhccc
Q 002190 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD----RFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (955)
Q Consensus 80 ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~----~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~ 155 (955)
||+|+++|+..++|++++||...+++++|+++|.||++.. ++|+.+.++.++++.++.+++++|+.||+.+++||+
T Consensus 81 ir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN 160 (1082)
T KOG1410|consen 81 IRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999988999999999999999999999998864 789999999999987889999999999999999999
Q ss_pred CCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHhHhccccccccCCCCCcCcccc
Q 002190 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK-----SDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (955)
Q Consensus 156 ~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~-----~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~ 230 (955)
+.+.+.+..+|||...+|||+.|.+||.+++.+|+... ++.+..+..++|++..+||+|||+|++.||++||.++
T Consensus 161 ~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ct 240 (1082)
T KOG1410|consen 161 QADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCT 240 (1082)
T ss_pred CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999875 2234579999999999999999999999999999999
Q ss_pred ccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCc
Q 002190 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADH 310 (955)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~ 310 (955)
+++|.+||..+.|++.+++||++|...+|+++..++.||+|+||+|+++|++ .+|.+|++++++|+..++++++|++|+
T Consensus 241 VQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~-aeRa~yl~~Lv~Gvk~il~np~~LsD~ 319 (1082)
T KOG1410|consen 241 VQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG-AERAKYLQHLVEGVKRILENPQGLSDP 319 (1082)
T ss_pred eecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhCCcCCCCc
Confidence 9999999999999999999999999889999999999999999999999966 789999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCcccccCCCcchhhh
Q 002190 311 DNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDE 390 (955)
Q Consensus 311 e~~~~~~~ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~~~~~~~~~~~l~~ 390 (955)
+.||+|||++.|+++||++.+|.+.++|++|++.++.||+.+++.|.|.+++.+|+|.+|.+++.+.||++++.|+.++.
T Consensus 320 ~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~ 399 (1082)
T KOG1410|consen 320 ANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDT 399 (1082)
T ss_pred chHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCCChHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccccccccccCCCCCCCCCCCHHHHHHHHhhhhhhhhcchhhHHHHHHHhHHHHHHHHHHHhhcCCCCc
Q 002190 391 FVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDK 470 (955)
Q Consensus 391 ~~~~I~~~yi~~~l~~~~~~~~ee~~e~~~~d~~~~~~~le~i~~l~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 470 (955)
|+|+|.++||.+|++.++..+.|+ .|+|+||.+...+++|.+++++|+.|+.|+.++.++|++..+.|++.......++
T Consensus 400 y~PeIt~afi~SRl~sV~~ivrd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~ 478 (1082)
T KOG1410|consen 400 YCPEITKAFITSRLQSVEIIVRDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSAND 478 (1082)
T ss_pred hcHHHHHHHHHHHhhhhheecccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCc
Confidence 999999999999999987665555 6899999999999999999999999999999999999999999998755444466
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHH
Q 002190 471 SEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHF 550 (955)
Q Consensus 471 ~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~ 550 (955)
.++.+.|.+|.|+++++|.+++|+ .++++.++++++||+|+++|++++++.|... +..+.+|++.|++||+++|
T Consensus 479 ~d~ai~EgrL~Wlv~lvgtvV~gk-~t~~Std~~d~mDgEL~arvlql~nlmdsr~-----~~~~n~rle~ail~f~eqF 552 (1082)
T KOG1410|consen 479 ADIAIQEGRLVWLVYLVGTVVGGK-TTATSTDEHDAMDGELSARVLQLVNLMDSRL-----PLKGNERLELAILHFLEQF 552 (1082)
T ss_pred hhHHHHhhhhhhhHHHhHHHhcce-ecccccchhhhhhhHHHHHHHHHHHhhhccc-----chhhhHHHHHHHHHHHHHH
Confidence 677889999999999999999999 6667789999999999999999999988755 4556799999999999999
Q ss_pred HHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHH
Q 002190 551 RKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIK 630 (955)
Q Consensus 551 ~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~ 630 (955)
+++|+|++.++++|+|.+++|.+|..|...++++++.||.+||++|+..++++..+++||.+++.|++.+|+++++|.|+
T Consensus 553 Rk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~Vq 632 (1082)
T KOG1410|consen 553 RKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQ 632 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCcccc---cccchhhHHHHHHHHHHhcC--CChHHHHHhhHHHHHHHHHhc-cCCCccCCcHHHHHHH
Q 002190 631 FIVANHTREHFPFLEEY---RCSRSRTTFYYTIGWLIFME--ESPVKFKSSMDPLLQVFISLE-STPDSMFRTDAVKCAL 704 (955)
Q Consensus 631 ~ll~~~~~~~~~~l~~~---~~~k~r~~~y~al~~i~~~~--~~~~~~~~~l~p~~~~~~~i~-~~~~~~~~~~~~~~~i 704 (955)
.+++||++++|+||+.. +..|+||+||.|+|++++.| +++..|++||.|+.+.|..+. .-+...++.+++|..+
T Consensus 633 fmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede~~fe~fm~PLt~~fe~v~~~~~nn~f~ee~vK~~l 712 (1082)
T KOG1410|consen 633 FMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDEDMFERFMLPLTDAFEGVLQVFQNNCFEEEQVKRIL 712 (1082)
T ss_pred hHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999865 66899999999999999887 457899999999999999875 1222469999999999
Q ss_pred HHHHHHHhhhhhhhccchhHHHHHHHHhhcchHHHHHhhhhhcCCCcchHHHHHHHHHHHhcccceeeecCCCcchhHHH
Q 002190 705 IGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLF 784 (955)
Q Consensus 705 ~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf 784 (955)
+++.||+|||+.|.+.+.+|.++|+|+||.+++++...++.|.++|+++++||||++|+++||+||+.|+.+||+|++||
T Consensus 713 iGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLF 792 (1082)
T KOG1410|consen 713 IGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLF 792 (1082)
T ss_pred HHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCC--cchhhhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccChhh
Q 002190 785 REVSKLIVAYGSRVLSLPN--AADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLAD 862 (955)
Q Consensus 785 ~~~~~il~~y~~~~~~~~~--~~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~~d 862 (955)
|+.++++..||.+++++|+ +...|+++||+|.+|+.++.++++|+|||||||++|||+.+.+++..++.++++||..|
T Consensus 793 rEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~sD 872 (1082)
T KOG1410|consen 793 RETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHSD 872 (1082)
T ss_pred hhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999985 44479999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhcccccccccccceeeccccc
Q 002190 863 ILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLCPFRFSLECL 939 (955)
Q Consensus 863 l~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~~~~~~~~~~ 939 (955)
+++|||+.++||.+++.+++.|+.++.+|+|+.|-.++.||..||++-|+-|+..||.+ +|++++|.|++-..
T Consensus 873 ~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccss----lD~i~tYlfk~itr 945 (1082)
T KOG1410|consen 873 LLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSS----LDTIVTYLFKRITR 945 (1082)
T ss_pred HHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHH----HHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999998654
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-74 Score=620.23 Aligned_cols=803 Identities=16% Similarity=0.202 Sum_probs=593.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
+++.||++++.+|.|.+ .++++|+++|++|++.||+|.++++||++|++|.++|.|++.|.++|++ +.+|.+.|.||
T Consensus 12 diallDkVVttfyqg~g-~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 12 DIALLDKVVTTFYQGDG-RKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred CHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 68899999999998865 7889999999999999999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc--ccchhHHHHHHHHHHHHhc
Q 002190 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ--ATSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~--~~~~~~~~gl~lL~~lv~e 153 (955)
|+|+++.+++++.+. .+++.+++..+++.|+|++||.+|| +||+++.+.++. +-++++++.|++|+++|++
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP--~FIpeli~~S~~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWP--TFIPELINVSQISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--hhhHHHHhhccchHHHHhccHHHHHHhHHHHHh
Confidence 999999999987553 4899999999999999999999999 999999877642 2248999999999999999
Q ss_pred ccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccC
Q 002190 154 MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQI 233 (955)
Q Consensus 154 f~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~ 233 (955)
||..+++....+|.|.. +..+ +++||++|.++|+...+ ++++.++|+.+.++|.|.|.++. +|
T Consensus 169 fSaeqmTq~k~~~LkNq--m~~E-F~qIF~lc~qiLE~~~~---~SLi~ATLesllrfl~wiPl~yI-fe---------- 231 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQ--MKIE-FPQIFGLCKQILEYSRD---ESLIEATLESLLRFLEWIPLDYI-FE---------- 231 (1053)
T ss_pred ccHHHHHHHHHHHHHHH--Hhhh-HHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHhhCchhHH-HH----------
Confidence 99988766666666655 5455 99999999999998765 58999999999999999999874 33
Q ss_pred CCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhcccc-CCCCChHHH--HHHHHHHHHHHH-HHhhcCc----
Q 002190 234 PSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR-SLFTNDAAR--SKFLAHLMTGTK-EILQTGQ---- 305 (955)
Q Consensus 234 p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~-~~f~~~~~~--~~~l~~~l~~~~-~il~~~~---- 305 (955)
++.++++.+.+. ..|+.+..+++||++++++.+ +.-+...+| .-+++.++.... ..++...
T Consensus 232 ----------TnIieLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e 300 (1053)
T COG5101 232 ----------TNIIELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYE 300 (1053)
T ss_pred ----------HHHHHHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 678999888775 678899999999999999973 332222222 234444444332 1222111
Q ss_pred ---CC--CCcchHHHHHHHHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhccc-cCcHHHHHHHHHHhhcCccc
Q 002190 306 ---GL--ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWA-SSSVYYLLGLWSRLVTSVPY 379 (955)
Q Consensus 306 ---~l--~~~e~~~~~~~ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~~-~~~~~~lL~~W~~l~~~~~~ 379 (955)
+. .+....+.++.+++.+.+.| ++-|+.-+.-+..++. .++. ++...+. .|.|+.+|++|++++.++ |
T Consensus 301 ~Y~~~~~neq~Fvq~LA~fL~s~~~~~-~~lLE~~e~~e~llna-h~YL---iqiSrInereiFkt~leyW~klVadL-y 374 (1053)
T COG5101 301 VYGGMDKNEQIFVQKLAQFLSSLYEVY-ISLLEAREMAENLLNA-HGYL---IQISRINEREIFKTALEYWNKLVADL-Y 374 (1053)
T ss_pred HHcccChhHHHHHHHHHHHHHHHHHHH-HHHhcChhHHHHHHHH-HHHh---hhhhhccHHHHHHHHHHHHHHHHHHH-H
Confidence 11 23344556777777777766 3333332221111111 1111 2333343 478899999999999876 3
Q ss_pred cc---------CC-------------Cc----------chhhhhHHHHHHHHHhcccccccccc-C-CCCCCC---CCCC
Q 002190 380 LK---------GD-------------AP----------SLLDEFVPKITEGFITSRFNSVQAGF-P-DDLSDN---PLDN 422 (955)
Q Consensus 380 ~~---------~~-------------~~----------~~l~~~~~~I~~~yi~~~l~~~~~~~-~-ee~~e~---~~~d 422 (955)
.+ ++ .| +......+++.-..| .+|..|++++ + +|.+|. ..+|
T Consensus 375 ~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvli-enMvrPEEVliVendegEivRefvke 453 (1053)
T COG5101 375 SEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLI-ENMVRPEEVLIVENDEGEIVREFVKE 453 (1053)
T ss_pred HHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHH-HcCCCcceEEEEECCCcHHHHHHhcc
Confidence 21 00 01 111223357777766 5577777763 3 343432 2233
Q ss_pred ---HHHHHHHHhhhhhhhhcchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccC
Q 002190 423 ---VELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGC 499 (955)
Q Consensus 423 ---~~~~~~~le~i~~l~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~ 499 (955)
.+.++.+++++.+|+++...++..++...+...+ .+.+|||+++| +|||+|+ ++.|++
T Consensus 454 tDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~-------dg~EWsw~nlN----tLcWAIG---SISGam----- 514 (1053)
T COG5101 454 TDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQL-------DGKEWSWNNLN----TLCWAIG---SISGAM----- 514 (1053)
T ss_pred ccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHh-------cCCccchhhHh----HHHHHHh---cccchh-----
Confidence 3567899999999999999999999999988753 35788999998 9999994 555555
Q ss_pred CCccccccchHHHHHHHHHHhhccccc-------cccc--cccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Q 002190 500 SLESQEVLDAELSARVLQLINVTDSGL-------HSQR--YCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLS 570 (955)
Q Consensus 500 ~~~~~~~~d~~L~~~v~~l~~~~~~~~-------~~~~--~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~ 570 (955)
+|+.|+ ++++.++..++.+|.... -+++ |.+++|||+++|+|.||++ ++ .|+||+|+
T Consensus 515 -sE~~Ek--rF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkT----Vv-------~KLFEFMh 580 (1053)
T COG5101 515 -SEVNEK--RFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKT----VV-------KKLFEFMH 580 (1053)
T ss_pred -hhHHHH--HHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHH----HH-------HHHHHHHh
Confidence 466676 688889888888874322 2343 7889999999999999994 54 78999999
Q ss_pred Hhh-CCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhcccCCCCCcccccc
Q 002190 571 ELL-GLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRC 649 (955)
Q Consensus 571 ~~~-g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~~~~~~~~l~~~~~ 649 (955)
|.+ |++| |+||+|++.+..|=.++ ..- +.-..-|.+.+++++....+.+ |+
T Consensus 581 E~HEGvqD--MACDtFiKIvqKC~~hF--------------v~Q-------q~gesEpFI~~Iirnl~ktT~d-L~---- 632 (1053)
T COG5101 581 EDHEGVQD--MACDTFIKIVQKCPVHF--------------VTQ-------QEGESEPFIVYIIRNLPKTTGD-LE---- 632 (1053)
T ss_pred hhhhhHHh--hhHHHHHHHHHhCcHHH--------------hhc-------CCCCCCcHHHHHHHhhhhhccc-CC----
Confidence 999 9999 89999997666652111 000 0112356668888888765544 33
Q ss_pred cchhhHHHHHHHHHHhcCC----ChHHHHHhhHHHHHHHHHhcc---CCCccCCcHHHHHHHHHHHHHHhhhhhhhccc-
Q 002190 650 SRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLES---TPDSMFRTDAVKCALIGLMRDLRGIAMATNSR- 721 (955)
Q Consensus 650 ~k~r~~~y~al~~i~~~~~----~~~~~~~~l~p~~~~~~~i~~---~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~- 721 (955)
+.+.++||+|+|.++...+ +.+..-.+|+.++..|..+.. .+...+.|+++.+...+.+..+...|-+++..
T Consensus 633 pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~f 712 (1053)
T COG5101 633 PQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRF 712 (1053)
T ss_pred hHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhccccc
Confidence 3355899999999997664 345688899999999999852 11256778888888889999999888888752
Q ss_pred -----hhH-HHHHHHHhhcchHHHHHhhhhh----cCCC------cchHHHHHHHHHHHhcccceeeecCCCcchhHHHH
Q 002190 722 -----RTY-GLLFDWLYPAHMPLLLKGISHW----TDTP------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFR 785 (955)
Q Consensus 722 -----~~~-~~~f~~i~~~~~~~~~~l~~~y----~~~~------~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~ 785 (955)
.+| .+++-+..-. +.+. +.+.+- ...| .+-..||||+...++ |...+.+.. ..++-.
T Consensus 713 yPq~~~~y~~ml~ly~avs-~~Is-~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIs-ka~dl~~V~----n~lv~~ 785 (1053)
T COG5101 713 YPQTCSSYCIMLFLYFAVS-FDIS-NSVAAEGLIATKTPAVRGLRTIKKEILKLVATYIS-KARDLKFVQ----NDLVNM 785 (1053)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHH-HHHHhcccccccCccccchHHHHHHHHHHHHHHHh-hhhhHHHHH----HHHHHH
Confidence 112 1222111111 1111 111111 1233 344588999998887 334344322 335666
Q ss_pred HHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccChhhHHh
Q 002190 786 EVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILA 865 (955)
Q Consensus 786 ~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~ 865 (955)
.+.+++.+|..+ +|..+ +++.++....+.+-+.+++.- ..+-.+..+|.+++.|...|+-+
T Consensus 786 l~eaVl~DY~nN---vPdar--daevLnl~ttiV~~v~~~i~~--------------~~~l~l~svf~ctl~mi~kdf~E 846 (1053)
T COG5101 786 LCEAVLFDYKNN---VPDAR--DAEVLNLGTTIVRNVESVIYL--------------QRELFLISVFICTLIMIVKDFDE 846 (1053)
T ss_pred HHHHHHHHHhcC---CCccc--cHHHHHHHHHHHHHHHHHhhh--------------hhHHHHHHHHhhhHHHHHhhhhh
Confidence 777888888754 77777 788888777776666655442 35678899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhccccccccccc
Q 002190 866 FRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLC 930 (955)
Q Consensus 866 yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~ 930 (955)
||+||++||.|++.+...++..+.++|+..|+.++++|.|+++|..++|...|+.++++++.|+.
T Consensus 847 ypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~ 911 (1053)
T COG5101 847 YPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCH 911 (1053)
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888754
No 3
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-46 Score=443.69 Aligned_cols=798 Identities=17% Similarity=0.210 Sum_probs=557.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
+.+.+++++..++.-+++++|.+|++++.+|+..|+.|..|..||+.++++.++|||++.|++.|+. +.+|.++|.++
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~gl 88 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGL 88 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHH
Confidence 3566777777776546779999999999999999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcc--cchhHHHHHHHHHHHHhc
Q 002190 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQA--TSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~--~~~~~~~gl~lL~~lv~e 153 (955)
|+|+.+.++..+++. .+++++|++.+++.|+||+||..|| +|+.++.+.+..+ ..++.++.+++|++.|++
T Consensus 89 k~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp--~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 89 KNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWP--TFIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcc--hhhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 999999999887766 5999999999999999999999998 8999998877532 347899999999999999
Q ss_pred ccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccC
Q 002190 154 MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQI 233 (955)
Q Consensus 154 f~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~ 233 (955)
|++..+......|.+.. .+. .+..||++|..++.++.. .++.+++..+.++++|++.|+. .+
T Consensus 167 ~ss~~~~q~~~~il~~~--~~~-~f~~i~~l~~~~~~~a~~----~~~~atl~tl~~fl~wip~~~I-~~---------- 228 (1041)
T KOG2020|consen 167 FSSSELTQQKIIILKNL--LEN-EFQQIFTLCSYIKEKANS----ELLSATLETLLRFLEWIPLGYI-FE---------- 228 (1041)
T ss_pred ccchHHHhhhHHHHHHH--hhH-HHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhcccHHHH-HH----------
Confidence 99988655555555555 445 489999999998877654 3999999999999999999885 22
Q ss_pred CCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHH---HHhhcC---cCC
Q 002190 234 PSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTK---EILQTG---QGL 307 (955)
Q Consensus 234 p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~---~il~~~---~~l 307 (955)
.+.+..+...+. ..+.++..+++||+++++..+..+. .....++...+..+. ..+..+ .+.
T Consensus 229 ----------tn~l~~~l~~~l-n~~~~r~~al~CL~ei~s~~~~~~~--~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~ 295 (1041)
T KOG2020|consen 229 ----------TNILELLLNKFL-NAPELRNNALSCLTELLSRKRSIYE--RKTVPMFNLTIYQLRSIPQDLDIPEVYSSL 295 (1041)
T ss_pred ----------hhhHHHHHHhcc-chHHHHHHHHHHHHHHHhccccchh--HHhHHHHHHHHHHHHHhhhhhchhhhhhcc
Confidence 334666665543 5688999999999999999877442 233455555555533 222111 111
Q ss_pred C--Cc-chHHHHHHHHHHhhhhcchhhhhcc-cChHHHHHHHHHHHHHHhhhhcc-ccCcHHHHHHHHHHhhcCcccccC
Q 002190 308 A--DH-DNYHEYCRLLGRFRVNYQLSELVNV-EGYSDWIQLVAEFTLKSLQSWQW-ASSSVYYLLGLWSRLVTSVPYLKG 382 (955)
Q Consensus 308 ~--~~-e~~~~~~~ll~rl~~~~~~~~l~~~-~~~~~fl~~l~~~t~~~l~~~~~-~~~~~~~lL~~W~~l~~~~~~~~~ 382 (955)
. ++ .....++.+++.|...| ..-+... ...+.-+..+ ..++..... ..+.++.|+++|..++.+..|. .
T Consensus 296 ~~~dq~~fi~~l~~~l~~f~~~~-~~lle~~~~~~~~~~~~~----~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~-~ 369 (1041)
T KOG2020|consen 296 SDEDQDSFIEKLAQFLSLFFEQH-IALLESSLSQRPVLLEAL----LELILISTIEPSEIFKICLDYWNKLVADLYYN-K 369 (1041)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHH-HHHHcCchhhhhHHHHHH----HHHHHHhccCchhHHHHHHHHHHHHHHhhhcc-c
Confidence 1 22 23334788888887776 2333331 1122222222 222233222 3467888999999999987553 1
Q ss_pred CCc-----c----------------hhhhhHHHHHHHHHhcccccccccc-C-CCCCC---CCCCCH---HHHHHHHhhh
Q 002190 383 DAP-----S----------------LLDEFVPKITEGFITSRFNSVQAGF-P-DDLSD---NPLDNV---ELLQDQLDCF 433 (955)
Q Consensus 383 ~~~-----~----------------~l~~~~~~I~~~yi~~~l~~~~~~~-~-ee~~e---~~~~d~---~~~~~~le~i 433 (955)
+| . ....+..+..-. ...+|.+|++++ . +|.++ +...|. ..+..+++..
T Consensus 370 -~~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l-~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l 447 (1041)
T KOG2020|consen 370 -PPLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLL-RLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETL 447 (1041)
T ss_pred -ccccccccccccccchhccchHHHHHHHHHHHHHHH-HHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHH
Confidence 11 0 011122233322 446778887753 2 33222 122233 3557999999
Q ss_pred hhhhhcchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHH-HHHHHhhccccccCCCccccccchHHH
Q 002190 434 PYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH-IIAAIVKIKQCTGCSLESQEVLDAELS 512 (955)
Q Consensus 434 ~~l~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~-i~g~~l~~~~~~~~~~~~~~~~d~~L~ 512 (955)
.+++.++..++..++...+...++. ..++++.++ ++||.|+ ++|+++ +..+. ..++
T Consensus 448 ~~~~~L~~~~t~~~~~~kl~~~l~~-------~~~~~~~ln----~l~~ai~sisg~~~----------e~~e~--k~~~ 504 (1041)
T KOG2020|consen 448 VYLLHLDVVDTEKIMTEKLAIQLDG-------DEWSLHNLN----RLCWAIGSISGRML----------EDMEK--KFFV 504 (1041)
T ss_pred HHHHHhhhhhhhhhhhHhHHHHhhH-------HHHhhhhhh----hHHHHHHHHHhhhH----------HHHHH--HHHH
Confidence 9999999999999999987765443 233566666 8999995 666555 32232 4678
Q ss_pred HHHHHHHhhcccccccc-------c--cccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhh-CCCchHHHH
Q 002190 513 ARVLQLINVTDSGLHSQ-------R--YCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELL-GLHDHLLLL 582 (955)
Q Consensus 513 ~~v~~l~~~~~~~~~~~-------~--~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~-g~~d~~~~~ 582 (955)
.++.+++++++...... + +.++.+|||.+++|.||+ ++. .+++++||+.+ |++| |+|
T Consensus 505 ~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lk----t~~-------~~L~efmhe~h~gvqd--mac 571 (1041)
T KOG2020|consen 505 AVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLK----TVV-------HKLFEFMHETHEGVQD--MAC 571 (1041)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHH----HHH-------HHHHHHHhhhhHHHHh--hhH
Confidence 88888888875544322 2 455679999999999998 353 78999999999 8899 899
Q ss_pred HHHHHHHHhcccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhcccCCCCCcccccccchhhHHHHHHHH
Q 002190 583 NVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGW 662 (955)
Q Consensus 583 ~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~ 662 (955)
|+|++.+..+..+| + ........|.+..++.+.+....+ ++ ..+|+.+|+++|.
T Consensus 572 d~F~~ii~~~~~~f-----v----------------~~~~~e~~~fv~~~~~~l~~i~~~-l~----~~q~~~~~~al~~ 625 (1041)
T KOG2020|consen 572 DTFIKIIQKCKRHF-----V----------------ITQLGETKPFVGELLLNLTAITED-LQ----PQQRHTFYEALGL 625 (1041)
T ss_pred HHHHHHHHhhhhhh-----e----------------eecccccccchHHHhhcccchhcC-ch----HHHHHHHHHHHHH
Confidence 99999888876553 0 111223455677777666543222 22 5588999999996
Q ss_pred HHhcC----CChHHHHHhhHHHHHHHHHhccCC---CccCCcHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhcc
Q 002190 663 LIFME----ESPVKFKSSMDPLLQVFISLESTP---DSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAH 735 (955)
Q Consensus 663 i~~~~----~~~~~~~~~l~p~~~~~~~i~~~~---~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~ 735 (955)
++..+ .++++..++|.-.+..|..+..++ ...+..++....+..++..+..++.+.++ +|....+.++++.
T Consensus 626 ~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~--~f~~~~~~~~~d~ 703 (1041)
T KOG2020|consen 626 MVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGS--TFVPQLGKIYLDM 703 (1041)
T ss_pred HHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCc--ccccccccccHHH
Confidence 55443 235678888888899999976333 46778888888888888888888888876 3444444444443
Q ss_pred hHHHHHhh-------hhhcCC----C------cchHHHHHHHHHHHhcccceeeecCCCcchh-HHHHHHHHHHHHHHHh
Q 002190 736 MPLLLKGI-------SHWTDT----P------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSR 797 (955)
Q Consensus 736 ~~~~~~l~-------~~y~~~----~------~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~-~lf~~~~~il~~y~~~ 797 (955)
..++...- ..-+.. | .+..++++++..+.....+ . .-.+. .+...+...+-.|.+
T Consensus 704 ~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~fd~~~- 776 (1041)
T KOG2020|consen 704 LQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQ-----R-DLYLLMLVPPLLDAVLFDYLD- 776 (1041)
T ss_pred HHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccc-----h-hHHHHhhhhHHHHHHHHHHHc-
Confidence 22221111 000011 1 2223556666655552111 0 00011 233444445555543
Q ss_pred hhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHH
Q 002190 798 VLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFL 877 (955)
Q Consensus 798 ~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll 877 (955)
++|..+ +.+.. .+..++.+.+++-. . ..++.+...++++.+.|...|+..||+++..||.++
T Consensus 777 --nvPd~r--~~~vl----~l~~~iv~~Lg~~i-~---------~~~~~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~ll 838 (1041)
T KOG2020|consen 777 --NVPDYR--ENEVL----SLNATIVPKLGEFI-P---------AELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLL 838 (1041)
T ss_pred --cCcchh--cchHH----HhhhhhhhhhhhHh-h---------hhccHHHHHHHhhhhhccccccccchHHHHHHHHHH
Confidence 355444 23332 34555555444322 1 235578889999999999999999999999999999
Q ss_pred HHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhccccccccccc
Q 002190 878 EVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLC 930 (955)
Q Consensus 878 ~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~ 930 (955)
++++-.++..+.++|++.++.+++++.|+++|..++|++.++.++.+++++++
T Consensus 839 e~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~ 891 (1041)
T KOG2020|consen 839 EALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLA 891 (1041)
T ss_pred HHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888887765
No 4
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-38 Score=333.06 Aligned_cols=534 Identities=12% Similarity=0.085 Sum_probs=403.5
Q ss_pred cchhhhhHHHHHHHHHhcccccccc-------cc--CCCC--C--CCCCCCHHHHHHHHhhhhhhhhcchhhHHHHHHHh
Q 002190 385 PSLLDEFVPKITEGFITSRFNSVQA-------GF--PDDL--S--DNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINT 451 (955)
Q Consensus 385 ~~~l~~~~~~I~~~yi~~~l~~~~~-------~~--~ee~--~--e~~~~d~~~~~~~le~i~~l~r~~~~~~~~~l~~~ 451 (955)
+..+-.+..+|++.|+++|+..+.+ .+ .+|+ + ++.+||.|...|++...+.++|...+.|.+.. .+
T Consensus 34 ~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~l 112 (748)
T KOG4541|consen 34 EGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTGVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-AL 112 (748)
T ss_pred hhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcCCCccCCcchhHHHHHHhcCchHHHHHHHHH-HH
Confidence 3566678889999999999988654 11 1221 1 22467777788899999999999999988877 66
Q ss_pred HHHHHHHHHH----Hhh-c-CCC----CchhhhHHHHHHHHHHHHHHHHhhccccccC---------------C------
Q 002190 452 MEPILQSYTE----RAR-M-QTG----DKSEISVIEAKLAWIVHIIAAIVKIKQCTGC---------------S------ 500 (955)
Q Consensus 452 l~~~~~~~~~----~~~-~-~~~----~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~---------------~------ 500 (955)
++....++.. ..+ + +.+ ....+.-+.|+.||++++.|.-+.++...+. +
T Consensus 113 le~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~ 192 (748)
T KOG4541|consen 113 LEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMANSTDEETWSYEARDILLDTYTTLHTSKMDGSG 192 (748)
T ss_pred HHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCccCCCchHhhhhhhhcccccCCC
Confidence 6665433221 111 1 222 2234456778999999999988864421100 0
Q ss_pred -----Ccccccc-----------ch--HHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccc
Q 002190 501 -----LESQEVL-----------DA--ELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHS 562 (955)
Q Consensus 501 -----~~~~~~~-----------d~--~L~~~v~~l~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~ 562 (955)
+.+.+.. |. .+.+++++.-+.+.....+..-..+| |.+-+.+.||+++|.++|.-..
T Consensus 193 ~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a~~~~l~S-p~l~~~l~rfl~a~~~~~~~~~---- 267 (748)
T KOG4541|consen 193 GNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSAMDERLGS-PALIARLARFLDATIPFLAKLF---- 267 (748)
T ss_pred cccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhhHHHHHh----
Confidence 0011110 00 11223333333333333222234677 5699999999999999997654
Q ss_pred hHHHHHHHHhhCC------CchHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhc
Q 002190 563 SKLYARLSELLGL------HDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANH 636 (955)
Q Consensus 563 ~k~~~~l~~~~g~------~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~ 636 (955)
++.|..++..+|. ....+.+.++++|+..++..|+++++++.+|++.+.+++.+.+.......+++|+++....
T Consensus 268 ~~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~ 347 (748)
T KOG4541|consen 268 SDHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQC 347 (748)
T ss_pred HHHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHH
Confidence 7799999987754 3457899999999999999999999999999999999999888888899999999999887
Q ss_pred ccCC--CCCcccccccchhhHHHHHHHHHHhc--C--CChHHHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHHHHHH
Q 002190 637 TREH--FPFLEEYRCSRSRTTFYYTIGWLIFM--E--ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRD 710 (955)
Q Consensus 637 ~~~~--~~~l~~~~~~k~r~~~y~al~~i~~~--~--~~~~~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~ 710 (955)
.+.. .+++. ++.|.++++|+.+..++ + ...+++...++|+.++|-...+++ +..+++.+|+..+.+
T Consensus 348 ~s~~~~l~i~s----~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~----~q~~~~~~Ii~~l~~ 419 (748)
T KOG4541|consen 348 LSAEMRLSIFS----PPLMEALMKALVLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQH----NQGKFVLDIIVRLSL 419 (748)
T ss_pred hccCCcccccC----chHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHhccc----chhhHHHHHHHHHHH
Confidence 6532 23333 33678999999988644 2 356799999999999999888776 667888999999999
Q ss_pred HhhhhhhhccchhHHHHHHHHhhcchHHHHHhhhhhcCCCcchHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHH
Q 002190 711 LRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKL 790 (955)
Q Consensus 711 l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~i 790 (955)
+.|++.+.+.. ..+.+|++++... ..+..+++.|...++++..|+..+.+++.+. .+..+..++ .+.+|..|.++
T Consensus 420 ~~g~a~a~q~d-~~~~Lf~fL~~~~-~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~--~~y~~~e~~-~~~ly~sclql 494 (748)
T KOG4541|consen 420 TSGTAYAGQKD-LQRSLFQFLVLSA-YGCRGLMASNQYVKDLVAHITSSLVDVSNKS--DLYNLAEQP-DIILYVSCLQL 494 (748)
T ss_pred hccccccccch-hHHHHHHHHHHHH-hhhhhHHHHhhccHHHHHHHHHHHHHhhhhh--hhhccccCh-hHHHHHHHHHH
Confidence 99999999874 5899999999986 6899999999999999999999999998854 255555555 77799999999
Q ss_pred HHHHHHhhhcCCC-cchhhhhhhhhHHHHHHHHHHhhcCCcccccccc-ccCCCcHHHHHHHHHHHhcccChhhHHhhHH
Q 002190 791 IVAYGSRVLSLPN-AADIYAYKYKGMWICFTILARALAGNYVNFGVFE-LYGDRALSDALDIALKMTLSIPLADILAFRK 868 (955)
Q Consensus 791 l~~y~~~~~~~~~-~~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~~~-~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPk 868 (955)
++.|+....+.+. ...+|+|+|.++.++++++.|.+++||+++|.-. .++ -..++....+++.+.++..++++|||
T Consensus 495 ~~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~~~--G~a~VV~~gl~~ilplm~~~lLk~P~ 572 (748)
T KOG4541|consen 495 ERLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQSTN--GIAQVVYFGLHIILPLMTLELLKYPK 572 (748)
T ss_pred HHHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhcccccccccc--CcceEEEeeHHHHHHHHHHHHHhchH
Confidence 9999986555553 3455999999999999999999999999998743 221 12556667788777777799999999
Q ss_pred HHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhcccccccccccceeecccccccc
Q 002190 869 LTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLCPFRFSLECLVSV 942 (955)
Q Consensus 869 l~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~~~~~~~~~~~~~ 942 (955)
+|.+||+++.++|+..|++++++|.+.++.++.|+..|++. ++...+|+...|.+-++++=--|.+|.+|+
T Consensus 573 lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTg---e~~s~~l~~~~e~v~hfgspankgrcTqnl 643 (748)
T KOG4541|consen 573 LCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTG---ESHSAGLHTDPEGVFHFGSPANKGRCTQNL 643 (748)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCcc---ccchHhhccChHhhhccccccccccccccH
Confidence 99999999999999999999999999999999999999993 344444444444477777766677766664
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6e-15 Score=167.89 Aligned_cols=806 Identities=12% Similarity=0.086 Sum_probs=427.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
+|+++|.++.++|.++.++..+.++++|++.+.+|++|...+.+|+-.+++.+|||+|.+|+..|++ ...|++++.++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 4899999999999998778899999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc-ccc-----hhHHHHHHHHHHHHhcc
Q 002190 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ-ATS-----DHYAIGLKILNQLVSEM 154 (955)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~-~~~-----~~~~~gl~lL~~lv~ef 154 (955)
+.-++.-+... ...++.|.+|++..+|.+.-.--+|.|| .-+.++...+.. .++ -++.+-++.|+.+..||
T Consensus 85 ~~klf~~l~~~-~g~~~lVl~kl~~sLasl~l~~~~d~Wp--~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 85 KLKLFLILSRF-AGGPKLVLNKLCASLASLILYMVPDLWP--TAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHccccCC--chHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence 99999998877 4569999999999999998877788876 446676655532 223 48899999999999999
Q ss_pred cCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhcc-ccc-cccCCCCCcCcccccc
Q 002190 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLS-FDF-VGTSIDESSEEFGTVQ 232 (955)
Q Consensus 155 ~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls-w~f-~~~~~de~~~~~~~~~ 232 (955)
+..++.++...-.|....++. ..++.+.-.+++........-+.--.-+-+.+|.+ |+- .+...-+.
T Consensus 162 q~~~l~~t~~~~l~~eLak~~---~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c-------- 230 (982)
T KOG2022|consen 162 QHVTLPLTRRSVLRGELAKFS---ENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDC-------- 230 (982)
T ss_pred hhccchhHHHHHHHHHHHHHH---HHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccH--------
Confidence 887754444222333332222 12222222233322111111000011122224442 554 11110000
Q ss_pred CCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCCh-----------HHHHHHHH------HHHH
Q 002190 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTND-----------AARSKFLA------HLMT 295 (955)
Q Consensus 233 ~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~-----------~~~~~~l~------~~l~ 295 (955)
....+.+++........--+.+=+|++ +.++++.++ ++-..|-. .+..
T Consensus 231 -----------~~i~~~ll~~l~~s~~~~~~a~~~cmt----~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~ 295 (982)
T KOG2022|consen 231 -----------DQITQVLLDVLGQSTEGSYEAAEKCMT----IFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICL 295 (982)
T ss_pred -----------HHHHHHHHHHHhhhccccccchhhhcc----cchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHH
Confidence 112333333322111011111111111 111111111 11111211 1222
Q ss_pred HHH----HHhhcCcCC-CCcchHHHHHHHHHHhhhhcchhhhhccc--ChHHHHHHHHHHHHHHhhhhccc--cCcHH-H
Q 002190 296 GTK----EILQTGQGL-ADHDNYHEYCRLLGRFRVNYQLSELVNVE--GYSDWIQLVAEFTLKSLQSWQWA--SSSVY-Y 365 (955)
Q Consensus 296 ~~~----~il~~~~~l-~~~e~~~~~~~ll~rl~~~~~~~~l~~~~--~~~~fl~~l~~~t~~~l~~~~~~--~~~~~-~ 365 (955)
+.. .-++...+. +.+|+.++|+++...+..||...-+.... .-.+.+..+.+....+...++.. +|.+. .
T Consensus 296 ~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~ 375 (982)
T KOG2022|consen 296 GILQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDR 375 (982)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHH
Confidence 211 101111111 12567778999999999999665555441 11233334444445555566654 34444 4
Q ss_pred HHHHHHHhhcCcccccCCC-cchhhhhH----HHHHHHHHhccccccccccCCCCCCCCCCCHHHHHHHHhhhhhhhhcc
Q 002190 366 LLGLWSRLVTSVPYLKGDA-PSLLDEFV----PKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQ 440 (955)
Q Consensus 366 lL~~W~~l~~~~~~~~~~~-~~~l~~~~----~~I~~~yi~~~l~~~~~~~~ee~~e~~~~d~~~~~~~le~i~~l~r~~ 440 (955)
.++||..+.+++....++. +..-..+. .++.+.++ -+++.|. .+...+=+.++++.++..+..++-+.-..
T Consensus 376 ~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l-~K~~~Ps---~e~~~~W~S~s~e~F~~YR~diSD~~~~~ 451 (982)
T KOG2022|consen 376 TLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILL-KKLALPS---KEIWLSWSSDSREQFESYRKDISDLLMSS 451 (982)
T ss_pred HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH-HHhcCCC---HHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 7999999998753222221 22222233 45555555 2333331 12223446777888877777777777777
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHHHh
Q 002190 441 YENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLIN 520 (955)
Q Consensus 441 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~ 520 (955)
|+-...-++..+...+.+. ...+++++..++..| -.++-.-++... ++......+-++++
T Consensus 452 Y~ilgd~ll~~L~~~l~q~---~aa~d~~p~s~~~tE----aci~~~~sva~~-------------~~~t~~~~i~rl~~ 511 (982)
T KOG2022|consen 452 YSILGDGLLDFLIDTLEQA---LAAGDEDPDSLNRTE----ACIFQFQSVAEY-------------LGETESTWIPRLFE 511 (982)
T ss_pred HHHHhHHHHHHHHHHHHHh---hhccCCCchHHHHHH----HHHHHHHHHHhh-------------cCcchhHHHHHHHH
Confidence 7665555555555444432 222334555444332 233211222211 11112223444544
Q ss_pred hccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCch
Q 002190 521 VTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQ 600 (955)
Q Consensus 521 ~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~ 600 (955)
.+ .....+ .. +|.+.++...-+..... |++++...-+..-+.+-..+|. .
T Consensus 512 ~~-asik~S---~~-n~ql~~Tss~~igs~s~-~l~e~P~~ln~sl~~L~~~Lh~------------------------s 561 (982)
T KOG2022|consen 512 TS-ASIKLS---AP-NPQLLSTSSDLIGSLSN-WLGEHPMYLNPSLPLLFQGLHN------------------------S 561 (982)
T ss_pred hc-cccccc---cC-ChhHHHHHHHHHHHHHH-HHhcCCcccCchHHHHHHHhcC------------------------c
Confidence 32 111111 11 46677766665555444 5554432211111111111111 0
Q ss_pred HHHHHHHHHHHHHhccccchhhhccchhHHHHHHhcccCCCCCcccccccchhhHHHHHHHHHHhc---CCChHHHHHhh
Q 002190 601 EVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM---EESPVKFKSSM 677 (955)
Q Consensus 601 ~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~i~~~---~~~~~~~~~~l 677 (955)
+.-.++..-+.++++ +|+.-+ .|....++.. +.+.++- +..+ ...|..+|+++|.+... ++...|+.+++
T Consensus 562 k~s~q~i~tl~tlC~---~C~~~L-~py~d~~~a~-~~e~l~~-~~~~-~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 562 KESEQAISTLKTLCE---TCPESL-DPYADQFSAV-CYEVLNK-SNAK-DSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred hHHHHHHHHHHHHHH---hhhhhC-chHHHHHHHH-HHHHhcc-cccC-chHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 001111111333333 233111 1111222211 1111110 1111 23789999999999633 34556777777
Q ss_pred HHHHHHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccch--------hHH-------HHHHHHhhcchHHHHHh
Q 002190 678 DPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRR--------TYG-------LLFDWLYPAHMPLLLKG 742 (955)
Q Consensus 678 ~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~--------~~~-------~~f~~i~~~~~~~~~~l 742 (955)
.|+-...+... . ...++++.+..+...+..+...+.+...+. ..+ ......... ++.+.+.
T Consensus 635 n~il~qle~~l-~--~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~-i~~~~kv 710 (982)
T KOG2022|consen 635 NPILSQLEINL-A--PGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKA-IPVFEKV 710 (982)
T ss_pred HHHHHHHHHhh-c--CCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHH-HHHHHHH
Confidence 77766655543 2 357888888888888888888887776421 011 333333333 3677778
Q ss_pred hhhhcCCCcchHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHH
Q 002190 743 ISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTIL 822 (955)
Q Consensus 743 ~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il 822 (955)
.+.|-++.+|+....+-+..-+.+ -+-.|.. |.---++..+. +|.. .+.. ..+.+.
T Consensus 711 ~s~~~~~s~vve~~C~i~~~~v~~--~~~sF~~--p~l~~l~~Fi~----r~~~----~~~a------------~tl~l~ 766 (982)
T KOG2022|consen 711 LSMWLGLSDVVEASCIIMVKGVRS--LLTSFPE--PMLPSLCPFIV----RFLT----SCLA------------VTLSLI 766 (982)
T ss_pred HHHHhcchhHHHHHHHHHHhcccc--ccccchh--hhHHHHHHHHH----Hhcc----chHH------------HHHHHH
Confidence 888889999988776666554332 1122211 10001222222 2221 1110 011222
Q ss_pred HHhhcCCccccccccccCCCcHHHHHHHHHH-HhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHH
Q 002190 823 ARALAGNYVNFGVFELYGDRALSDALDIALK-MTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVG 901 (955)
Q Consensus 823 ~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~-l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~ 901 (955)
..++.-.+..-+. .|-+..-+..+++ ..+..--.-|..-|+.-..+|-++..+.+.+|..+.-.- ..|..++.
T Consensus 767 ~~~l~~~~~~~~~-----~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~-~~~ts~i~ 840 (982)
T KOG2022|consen 767 AACLLAKSTVEQC-----KPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM-LAFTSLIL 840 (982)
T ss_pred HHHHHhhhccccc-----cccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch-HHHHHHHH
Confidence 2222211111111 1223344444444 222222234788889999999999999999998655433 34666666
Q ss_pred -HHHHhhccccHHHHhhhhcccccccccccceeecc
Q 002190 902 -SLESGLKGLDTNISSQVYAQKWHQVICLCPFRFSL 936 (955)
Q Consensus 902 -sl~~gl~~~~~~i~~~~l~~~~~~l~~l~~~~~~~ 936 (955)
+-..+|++..+.-...++.. +.+++++-+.+
T Consensus 841 ~~a~~ll~~pE~~~i~aa~qF----~t~~~~~~~s~ 872 (982)
T KOG2022|consen 841 ICAFILLNSPEPTTIRAASQF----LTALATYATSH 872 (982)
T ss_pred HHHHHhcCCCccHHHHHHHHH----HHHHHhhcccc
Confidence 88899999887766777777 76677776654
No 6
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.4e-14 Score=158.62 Aligned_cols=261 Identities=15% Similarity=0.180 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh--cCCCHHHHHH
Q 002190 4 LAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--HSLALQLRLD 79 (955)
Q Consensus 4 l~~lE~~~~~l~~~-~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~ 79 (955)
++.+|+|+.+...| .|++.|++|-+.+.+.+++|++|+.|-.+|-++ +++.++||.+++|.+.++. ++....+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 45789999998887 588899999999999999999999999999887 8999999999999999996 7889999999
Q ss_pred HHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccc-hhHHHHHHHHHHHHhc
Q 002190 80 IRNYLINYLAKR-----GPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATS-DHYAIGLKILNQLVSE 153 (955)
Q Consensus 80 ir~~ll~~l~~~-----~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~-~~~~~gl~lL~~lv~e 153 (955)
+|.-+..|+... ....|.|++||+.++++.+.-..+|+.|+ +|..++...+..++. +....-|++|-++=.|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wn--sfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWN--SFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 999999988632 12468999999999999999999999998 889998877643222 2355667777777777
Q ss_pred ccCCCCCCchHHhHhh---hhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCcccc
Q 002190 154 MNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (955)
Q Consensus 154 f~~~~~~~~~~~h~k~---~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~ 230 (955)
....+.-.+.+..+|. +-.+|+.+.+++-..-.++++.-.....+.+...+|++.-+..||+=.+-.
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLI---------- 229 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLI---------- 229 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhh----------
Confidence 7666655666666664 457999999999999888887654321135788899999888888765433
Q ss_pred ccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHH
Q 002190 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL 293 (955)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~ 293 (955)
.++-+++++++... -.+++..|-.|+.++.|-+ ..+.++..++..+
T Consensus 230 -----------aNd~f~nLLy~fl~--ieelR~aac~cilaiVsKk----MkP~dKL~lln~L 275 (980)
T KOG2021|consen 230 -----------ANDYFLNLLYKFLN--IEELRIAACNCILAIVSKK----MKPMDKLALLNML 275 (980)
T ss_pred -----------hchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcC----CChhHHHHHHHHH
Confidence 34568999988763 4679999999999999976 2245677777665
No 7
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.64 E-value=2.9e-16 Score=171.15 Aligned_cols=156 Identities=14% Similarity=0.213 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCcc
Q 002190 752 VTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYV 831 (955)
Q Consensus 752 v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~v 831 (955)
+-..|||++..++++... .......++-..+..++.+|.++ .|..+ ++|++..+..+++.+.+.+.
T Consensus 43 iKkeIL~Li~t~i~~~~~-----~~~v~~~~i~~l~~~vL~DY~~~---~p~~r--~~evL~l~~~ii~kl~~~~~---- 108 (319)
T PF08767_consen 43 IKKEILKLIETFISKAED-----PEEVANNFIPPLLDAVLGDYQNS---VPDAR--EPEVLSLMATIINKLGELIQ---- 108 (319)
T ss_dssp HHHHHHHHHHHHHHT-S------HHHHHHHTHHHHHHHHHHHHHHS----GGGS---HHHHHHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHHHHHhcC---Ccccc--ChhHHHHHHHHHHHHHHhhh----
Confidence 345999999999995420 11112335667778899999874 55566 78888865555555555433
Q ss_pred ccccccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhcccc
Q 002190 832 NFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLD 911 (955)
Q Consensus 832 nfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~ 911 (955)
+.++.+++.+|++++.|+.+|+.+||+||.+||+||+++++.||+.+.++|++.|+.+++++.||++|.+
T Consensus 109 ----------~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~ 178 (319)
T PF08767_consen 109 ----------PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTN 178 (319)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSS
T ss_pred ----------hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccccc
Q 002190 912 TNISSQVYAQKWHQVICLCP 931 (955)
Q Consensus 912 ~~i~~~~l~~~~~~l~~l~~ 931 (955)
++|++.||+++.++++++..
T Consensus 179 ~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 179 REISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999997777776665
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.4e-07 Score=112.62 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
+.+.|+++.+.+.+| |++.|++||+.|...-..+.......+|+.+++++.++-+|+-.+++.+.+ +.++.+.|.+|
T Consensus 2 ~~~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSP-DNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred chhHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 457899999998865 568899999999855545559999999999999999999999999999987 89999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCC
Q 002190 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQP 157 (955)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~ 157 (955)
|+-++.-+.+- ...-||+|++.++|.|.|-.-++.|| +.++-+.+..++.++..+..++.||+.++..|...
T Consensus 81 ks~lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 81 KSSLLEIIQSE---TEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 99999988753 35689999999999999999888887 67777777776677888999999999999888763
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-07 Score=104.49 Aligned_cols=572 Identities=17% Similarity=0.217 Sum_probs=300.0
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhh--cCCCHHHHHH
Q 002190 6 QLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL--TPYALMLASSSLLKQVTE--HSLALQLRLD 79 (955)
Q Consensus 6 ~lE~~~~~l~~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~--~~~~~f~a~~~L~~~i~~--~~l~~~~k~~ 79 (955)
.|.++++.+-++ |+.+.|+.+...+.+|...|+.-...-+||-+.+ +..++=-|.-.|++-++- +.++++...-
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 345555554443 4568899999999999999999888889997754 455666666677777775 6778766555
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCC
Q 002190 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNP 159 (955)
Q Consensus 80 ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~ 159 (955)
+|+-+++-+ -+.++.+|.-.-.++-.|+-.+-..+|| +..+.+++.+.+.+..++.
T Consensus 91 iKs~~l~~l----gd~~~lIr~tvGivITTI~s~~~~~~wp--elLp~L~~~L~s~d~n~~E------------------ 146 (885)
T KOG2023|consen 91 IKSECLHGL----GDASPLIRATVGIVITTIASTGGLQHWP--ELLPQLCELLDSPDYNTCE------------------ 146 (885)
T ss_pred HHHHHHhhc----cCchHHHHhhhhheeeeeecccccccch--hHHHHHHHHhcCCcccccc------------------
Confidence 555555543 2444567766666666666555566676 5677777766421111110
Q ss_pred CCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCCcccc
Q 002190 160 GLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRP 239 (955)
Q Consensus 160 ~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~ 239 (955)
-.| ..|++|++=+-+.|..-..+.| +
T Consensus 147 -----------gA~--~AL~KIcEDsa~~lds~~~~rp-------l---------------------------------- 172 (885)
T KOG2023|consen 147 -----------GAF--GALQKICEDSAQFLDSDVLTRP-------L---------------------------------- 172 (885)
T ss_pred -----------hhH--HHHHHHHhhhHHHHhhhcccCc-------h----------------------------------
Confidence 112 1245444443333332110000 0
Q ss_pred cccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCcchHHHHHHH
Q 002190 240 VLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRL 319 (955)
Q Consensus 240 ~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~l 319 (955)
.-++..|+..|..+.|.++..++.|+.+..-++ .......+.++++++..+-. . .+++.-..+|+.
T Consensus 173 ----~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~------~qal~~~iD~Fle~lFalan--D--~~~eVRk~vC~a 238 (885)
T KOG2023|consen 173 ----NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ------TQALYVHIDKFLEILFALAN--D--EDPEVRKNVCRA 238 (885)
T ss_pred ----HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC------cHHHHHHHHHHHHHHHHHcc--C--CCHHHHHHHHHH
Confidence 115677788888788999999999999987554 23344445555555433221 1 345566679999
Q ss_pred HHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHH
Q 002190 320 LGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGF 399 (955)
Q Consensus 320 l~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~y 399 (955)
+.-+...++-+ ++ |. +..+-++..+..+ ..+++.-..-=+||..+.+.. .+++.+..|.+++.-..
T Consensus 239 lv~Llevr~dk-l~--ph----l~~IveyML~~tq--d~dE~VALEACEFwla~aeqp-----i~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 239 LVFLLEVRPDK-LV--PH----LDNIVEYMLQRTQ--DVDENVALEACEFWLALAEQP-----ICKEVLQPYLDKLIPVL 304 (885)
T ss_pred HHHHHHhcHHh-cc--cc----hHHHHHHHHHHcc--CcchhHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHHH
Confidence 99998887422 21 22 3333344333211 122232223457888877642 12233333333333222
Q ss_pred H----------------------------------hccccccccccCCC-CCCCCCCCHHHHH------HHHhhhhhhhh
Q 002190 400 I----------------------------------TSRFNSVQAGFPDD-LSDNPLDNVELLQ------DQLDCFPYLCR 438 (955)
Q Consensus 400 i----------------------------------~~~l~~~~~~~~ee-~~e~~~~d~~~~~------~~le~i~~l~r 438 (955)
+ ++|.....+...+| ++|++.||.+.+. -.=..+..++.
T Consensus 305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan 384 (885)
T KOG2023|consen 305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN 384 (885)
T ss_pred HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH
Confidence 1 11111100001111 1223334444331 11233444556
Q ss_pred cchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHH-----HHHHHhh-ccccccCCCccccccchHHH
Q 002190 439 FQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH-----IIAAIVK-IKQCTGCSLESQEVLDAELS 512 (955)
Q Consensus 439 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~-----i~g~~l~-~~~~~~~~~~~~~~~d~~L~ 512 (955)
.-.++.+++++.++.+.+.. =.|.+. -.|++-. ++... ...+ ++|+
T Consensus 385 vf~~elL~~l~PlLk~~L~~---------------------~~W~vrEagvLAlGAIAEGcM~g~------~p~L-peLi 436 (885)
T KOG2023|consen 385 VFGDELLPILLPLLKEHLSS---------------------EEWKVREAGVLALGAIAEGCMQGF------VPHL-PELI 436 (885)
T ss_pred hhHHHHHHHHHHHHHHHcCc---------------------chhhhhhhhHHHHHHHHHHHhhhc------ccch-HHHH
Confidence 66677777777777764221 123332 2233332 22111 0111 2566
Q ss_pred HHHHHHHhhccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhc
Q 002190 513 ARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATN 592 (955)
Q Consensus 513 ~~v~~l~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~ 592 (955)
...+.+++= + .|-+-.-..|-|.||.+ |+..+. ..+.+ ..++.-+++++..
T Consensus 437 p~l~~~L~D--K-----------kplVRsITCWTLsRys~-wv~~~~--~~~~f------------~pvL~~ll~~llD- 487 (885)
T KOG2023|consen 437 PFLLSLLDD--K-----------KPLVRSITCWTLSRYSK-WVVQDS--RDEYF------------KPVLEGLLRRLLD- 487 (885)
T ss_pred HHHHHHhcc--C-----------ccceeeeeeeeHhhhhh-hHhcCC--hHhhh------------HHHHHHHHHHHhc-
Confidence 666666631 1 12233334566777776 443321 01222 1233334444433
Q ss_pred ccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhcccCCCCCcccccccchhhHHHHHHHHHHhc----CC
Q 002190 593 LKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM----EE 668 (955)
Q Consensus 593 L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~i~~~----~~ 668 (955)
+..+|.+.|+.-|-.+-.. .+..| .|....++.+... .|-. -+ .|.-..+|-|+|.++-. -.
T Consensus 488 -----~NK~VQEAAcsAfAtleE~--A~~eL--Vp~l~~IL~~l~~---af~k-YQ-~KNLlILYDAIgtlAdsvg~~Ln 553 (885)
T KOG2023|consen 488 -----SNKKVQEAACSAFATLEEE--AGEEL--VPYLEYILDQLVF---AFGK-YQ-KKNLLILYDAIGTLADSVGHALN 553 (885)
T ss_pred -----ccHHHHHHHHHHHHHHHHh--ccchh--HHHHHHHHHHHHH---HHHH-Hh-hcceehHHHHHHHHHHHHHHhcC
Confidence 4566666666666655542 11111 2344455544321 1100 00 12224789999998522 14
Q ss_pred ChHHHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccc------hhHHHHHHHHhhcchHHHHHh
Q 002190 669 SPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSR------RTYGLLFDWLYPAHMPLLLKG 742 (955)
Q Consensus 669 ~~~~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~------~~~~~~f~~i~~~~~~~~~~l 742 (955)
.++|++-+|.|+-++|..+...+ +++.-+|+|+..|+.|.+.. ..|...|..+.. ...+
T Consensus 554 ~~~YiqiLmPPLi~KW~~lsd~D----------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~-----t~q~ 618 (885)
T KOG2023|consen 554 KPAYIQILMPPLIEKWELLSDSD----------KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK-----TLQL 618 (885)
T ss_pred cHHHHHHhccHHHHHHHhcCccc----------chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH-----HHHH
Confidence 57899999999999999986433 45899999999999999862 122222222221 1222
Q ss_pred hhhhcCCCcc-------hHHHHHHHHHHHhcccc
Q 002190 743 ISHWTDTPEV-------TTPLLKFMAEFVLNKAQ 769 (955)
Q Consensus 743 ~~~y~~~~~v-------~~~iLkl~~~~~~n~~~ 769 (955)
+..-.++|++ +..-|.|++-+++.-+.
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhh
Confidence 3222344433 33568888888876433
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.6e-05 Score=89.26 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhH-HHHHHHHHHHHHhh---cC--------CCHHHHHHHHHHHHH
Q 002190 19 DSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYA-LMLASSSLLKQVTE---HS--------LALQLRLDIRNYLIN 86 (955)
Q Consensus 19 ~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~-~f~a~~~L~~~i~~---~~--------l~~~~k~~ir~~ll~ 86 (955)
+++.|..||+.|.++...|.....+-+|.-..+.+.. +--|+--+++.|.+ .. +++++|.-+|+-++.
T Consensus 17 d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~ 96 (1010)
T KOG1991|consen 17 DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILE 96 (1010)
T ss_pred ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHH
Confidence 4689999999999999999999999999988877666 77777779999986 33 889999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhccc--CCCCCCchH
Q 002190 87 YLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN--QPNPGLPST 164 (955)
Q Consensus 87 ~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~--~~~~~~~~~ 164 (955)
++++- |..+|.++..++-.|+|...|+.|+ .+.+.+..++.+++..+..-||..|..++.-+. ...--.+.
T Consensus 97 ~iv~~----p~~iRvql~~~l~~Ii~~D~p~~Wp--~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l- 169 (1010)
T KOG1991|consen 97 TIVQV----PELIRVQLTACLNTIIKADYPEQWP--GLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL- 169 (1010)
T ss_pred HHHhC----chHHHHHHHHHHHHHHhcCCcccch--hHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH-
Confidence 99864 6789999999999999999999998 888899889876666788899999999987654 22211111
Q ss_pred HhHhhhhhcchhchHHHHHHHHHHHhhh
Q 002190 165 HHRRVACSFRDQSLFQIFQISLTSLGQL 192 (955)
Q Consensus 165 ~h~k~~~~f~~~~L~~if~~~~~~L~~~ 192 (955)
-.-+ ++.++.|.+...++|.+-
T Consensus 170 -----~~~v-~~~fP~il~~~~~ll~~~ 191 (1010)
T KOG1991|consen 170 -----GEAV-EELFPDILQIFNGLLSQE 191 (1010)
T ss_pred -----HHHH-HHHHHHHHHHHHhhcccc
Confidence 1113 334777878877777664
No 11
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.03 E-value=2.3e-09 Score=104.47 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccC-CCCCCchHHhHhhhhhcc
Q 002190 96 QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQ-PNPGLPSTHHRRVACSFR 174 (955)
Q Consensus 96 ~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~-~~~~~~~~~h~k~~~~f~ 174 (955)
|++|++|++.+++.|.++.||+.|+ +|++++.+.++ .++.+...++.+|..+.+|+.. .+...+..+++..+..++
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~-~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQ-SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 6899999999999999999999998 89999998886 4678899999999999999976 233334444444444565
Q ss_pred hhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCCcccccccCcchHHHHHHHH
Q 002190 175 DQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYY 254 (955)
Q Consensus 175 ~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~ 254 (955)
+. .+.++....+++.+........+...+|+++..+++|...+. +.+.++++.+|+..
T Consensus 78 ~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~---------------------i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 78 SN-SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL---------------------IINSNLLNLIFQLL 135 (148)
T ss_dssp HH-HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH---------------------HHSSSHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH---------------------hccHHHHHHHHHHc
Confidence 54 888888888888775532224688899999999998877543 23455899999876
Q ss_pred hhcCCcchHHHHHHH
Q 002190 255 AITEAPLSKEALECL 269 (955)
Q Consensus 255 ~~~~~~l~~~~l~cL 269 (955)
..+++...|.+||
T Consensus 136 --~~~~~~~~A~~cl 148 (148)
T PF08389_consen 136 --QSPELREAAAECL 148 (148)
T ss_dssp --TSCCCHHHHHHHH
T ss_pred --CCHHHHHHHHHhC
Confidence 6788999999997
No 12
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.3e-07 Score=101.79 Aligned_cols=309 Identities=20% Similarity=0.252 Sum_probs=189.5
Q ss_pred HHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 002190 24 AHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDIRNYLINYLAKRGPELQSFVTA 101 (955)
Q Consensus 24 ~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~ir~~ll~~l~~~~~~~~~~v~~ 101 (955)
..|.++|.+|+.++++|..|..||..-...++..||++++++.|.. +.+|+.+-.++|+-+...+.+. .+.+.-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l-~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKEL-HDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHH-HhCCchHHH
Confidence 3589999999999999999999999999999999999999999997 8999999999999888887765 455558899
Q ss_pred HHHHHHHHHHh--hccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCCCCchHHhHhhhhhcchh---
Q 002190 102 SLIQLLCRLTK--FGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQ--- 176 (955)
Q Consensus 102 ~l~~~la~i~K--~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~~~~~~~h~k~~~~f~~~--- 176 (955)
+++..+|.+.- .+|-+ -|.++....+ +.+..-+.-|.+|+.+++|..+.... -.-.|+.. |.++
T Consensus 81 QL~vavA~Lal~~~~W~n------~I~e~v~~~~-~~~~~~~~lLeiL~VlPEE~~~~~~~--~~a~Rr~e--~~~~l~~ 149 (559)
T KOG2081|consen 81 QLAVAVAALALHMPEWVN------PIFELVRALS-NKHPAVPILLEILKVLPEETRDIRLT--VGANRRHE--FIDELAA 149 (559)
T ss_pred HHHHHHHHHHHHhHhhcc------hHHHHHHHhh-cCCccHHHHHHHHHhCcHhhcchhhh--hhhhhHHH--HHHHHHH
Confidence 99988888764 45654 2445544432 23333778899999999998875531 11112222 2222
Q ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhc-cccccccCCCCCcCccccccCCCcccccccCcchHHHHHHHHh
Q 002190 177 SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCL-SFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYA 255 (955)
Q Consensus 177 ~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~L-sw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~ 255 (955)
.-..+......+|+....+. ...+.++ .+|+ ||--.+-.+-+ . +.....++.+.|....
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~-~~~l~~V----l~~l~SWl~~~~~~~d----~-----------v~a~~pLi~l~F~sl~ 209 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKS-SDDLEQV----LRCLGSWLRLHVFPPD----Q-----------VLASFPLITLAFRSLS 209 (559)
T ss_pred hHHHHHHHHHHHHhhcCCCh-hhHHHHH----HHHHhhhhhhccCCHH----H-----------HHhhhHHHHHHHHHcc
Confidence 23444455555555432211 2333344 4666 57654321100 0 1122246777777653
Q ss_pred hcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcC----cCCCCcchHHHHHHHHHHhhhhcchhh
Q 002190 256 ITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTG----QGLADHDNYHEYCRLLGRFRVNYQLSE 331 (955)
Q Consensus 256 ~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~----~~l~~~e~~~~~~~ll~rl~~~~~~~~ 331 (955)
...+-..+-.|+..+-.-..+. ++.+ .|-..++.+. .+++.. ..-.|.+-...+||++.-+...|- ..
T Consensus 210 --~~~lhe~At~cic~ll~~~~~~---~~~~-~~~~~l~~~v-~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~-~~ 281 (559)
T KOG2081|consen 210 --DDELHEEATECICALLYCSLDR---SEGL-PLAAILFIGV-IILETAFHLAMAGEDLDKNEAICRIFTELGEAFV-VL 281 (559)
T ss_pred --cchhhHHHHHHHHHHHHHhhhh---hccC-chhHHHhccc-cccchHHHHhhcccCHHHHHHHHHHHHHHHHHHH-HH
Confidence 5567788888888876432111 1111 2433333332 233332 122344555568999999988883 33
Q ss_pred hhcccChHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCc
Q 002190 332 LVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 377 (955)
Q Consensus 332 l~~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~ 377 (955)
+...+. .|+..+-.+ ..+-.... .+...+-+.+|.++...+
T Consensus 282 i~~np~--~~l~~vell-Ll~~~h~~--~evie~SF~fW~~lse~l 322 (559)
T KOG2081|consen 282 ISTNPE--EFLRIVELL-LLVAGHND--TEVIEASFNFWYSLSEEL 322 (559)
T ss_pred HhhCCC--cchhHHHHH-HHhccCCc--hhhhhhhHHhhhhhHHHH
Confidence 333343 344443222 11111122 256677899999998865
No 13
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.001 Score=77.36 Aligned_cols=177 Identities=15% Similarity=0.179 Sum_probs=122.0
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh---------cCCCH
Q 002190 7 LEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE---------HSLAL 74 (955)
Q Consensus 7 lE~~~~~l~~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~-~~~~~f~a~~~L~~~i~~---------~~l~~ 74 (955)
+|.+.+.+..+ +|++.|+.||+.|.+...++.+--..-.++.+++ .+.++--|+..+++-|+| ..++.
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~ 83 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIE 83 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccch
Confidence 45555555544 3567899999999999988887778888999988 667777777889999985 15677
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHH-HHhc
Q 002190 75 QLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQ-LVSE 153 (955)
Q Consensus 75 ~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~-lv~e 153 (955)
++|+.||.-++....+. +.-+..++..++..|.|+.+|+.|| +.++++.+.+++++. +...|..-..+ +-.-
T Consensus 84 ~~~e~ikslIv~lMl~s----~~~iQ~qlseal~~Ig~~DFP~kWp--tLl~dL~~~ls~~D~-~~~~gVL~tahsiFkr 156 (960)
T KOG1992|consen 84 EDREQIKSLIVTLMLSS----PFNIQKQLSEALSLIGKRDFPDKWP--TLLPDLVARLSSGDF-NVINGVLVTAHSIFKR 156 (960)
T ss_pred hHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHhccccchhhH--HHHHHHHhhccccch-HHHHHHHHHHHHHHHh
Confidence 89999999999987654 4568899999999999999999999 899999988864333 33444322222 2222
Q ss_pred ccCC-CCCCchHHhHhhhhhcchhchHHHHHHHHHHHhh
Q 002190 154 MNQP-NPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQ 191 (955)
Q Consensus 154 f~~~-~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~ 191 (955)
|+.. +..--|..-+++.-+|..- |..+|+...++.+.
T Consensus 157 ~R~efrSdaL~~EIK~vLd~f~~P-lt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 157 YRPEFRSDALWLEIKLVLDRFAEP-LTDLFRKTMELIQR 194 (960)
T ss_pred cCcccccHHHHHHHHHHHHhhHhH-HHHHHHHHHHHHhh
Confidence 2210 1111244445555555443 66666666655543
No 14
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.23 E-value=4.3e-06 Score=71.19 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=59.9
Q ss_pred HHHHHHhhccC-cccHHHHHHHH-hcCCChhHHHHHHHHHHHHHhh--c--------CCCHHHHHHHHHHHHHHHHh
Q 002190 26 AENTLKCFSVN-TDYISQCQFIL-DNALTPYALMLASSSLLKQVTE--H--------SLALQLRLDIRNYLINYLAK 90 (955)
Q Consensus 26 Ae~~L~~f~~~-~~~~~~~~~IL-~~S~~~~~~f~a~~~L~~~i~~--~--------~l~~~~k~~ir~~ll~~l~~ 90 (955)
||+.|.+|+.. |++|..|..|+ +.+.+++++++|+..|++.|++ . .+|+++|..||+++++.+.+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 79999999988 99999999999 5566999999999999999997 6 89999999999999998863
No 15
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.024 Score=65.82 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHhhccC--cccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------------cCCCHHHHHHH
Q 002190 17 SQDSVERAHAENTLKCFSVN--TDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------------HSLALQLRLDI 80 (955)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~-------------~~l~~~~k~~i 80 (955)
++|+..|..||+.|.++++. |......-.+|-+. ++++++..|.-.|++.+.. -.++.+-|+++
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556899999999999843 45555555666554 6789999999999998762 25888999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-hhhhhHHHHHHHHHhcccch-hHHHHHHHHHHHHhcccCCC
Q 002190 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLVKESTNFLSQATSD-HYAIGLKILNQLVSEMNQPN 158 (955)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~-~~~~~~i~~i~~~l~~~~~~-~~~~gl~lL~~lv~ef~~~~ 158 (955)
|++++.-+-. ..+.+.+...+++|.|...+-|.+ || ++|..+..-.....+. ...-.|.-+.-+-++..+..
T Consensus 92 K~~il~tL~~----~ep~~~s~Aaq~va~IA~~ElP~n~wp--~li~~lv~nv~~~~~~~~k~~slealGyice~i~pev 165 (859)
T KOG1241|consen 92 KNNILRTLGS----PEPRRPSSAAQCVAAIACIELPQNQWP--ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEV 165 (859)
T ss_pred HHHHHHHcCC----CCCCccchHHHHHHHHHHhhCchhhCH--HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHH
Confidence 9999988752 234566778889999999999875 77 7777776554322221 22334444444555543321
Q ss_pred CCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCCccc
Q 002190 159 PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWR 238 (955)
Q Consensus 159 ~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~ 238 (955)
.+.| -+..| +..+....+.-.+ ..+--.+++.+..+|.|.=.... .|..- +.
T Consensus 166 ----l~~~-------sN~iL---taIv~gmrk~e~s---~~vRLaa~~aL~nsLef~~~nF~-~E~er-n~--------- 217 (859)
T KOG1241|consen 166 ----LEQQ-------SNDIL---TAIVQGMRKEETS---AAVRLAALNALYNSLEFTKANFN-NEMER-NY--------- 217 (859)
T ss_pred ----HHHH-------HhHHH---HHHHhhccccCCc---hhHHHHHHHHHHHHHHHHHHhhc-cHhhh-ce---------
Confidence 1110 01111 2222222222111 23445677777777754321111 11110 00
Q ss_pred ccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccc
Q 002190 239 PVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVR 276 (955)
Q Consensus 239 ~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~ 276 (955)
+++..-+....++.++++.+++||+.|+++.
T Consensus 218 -------iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 218 -------IMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred -------eeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 1111111111245678999999999999763
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0013 Score=75.94 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHH
Q 002190 18 QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE-------HSLALQLRLDIRNYLINYLA 89 (955)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~-~~~~~f~a~~~L~~~i~~-------~~l~~~~k~~ir~~ll~~l~ 89 (955)
+|+..++-||+.|.++...|........|.-+.+ +..+++.|+--+++.|.| ..+|+++|..||.-++..+.
T Consensus 12 ~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~ 91 (978)
T KOG1993|consen 12 QDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD 91 (978)
T ss_pred CCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999998888876654 467788898889988874 57999999999999888765
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc----ccchhHHHHHHHHHHHHhcccCCCCCCchHH
Q 002190 90 KRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ----ATSDHYAIGLKILNQLVSEMNQPNPGLPSTH 165 (955)
Q Consensus 90 ~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~----~~~~~~~~gl~lL~~lv~ef~~~~~~~~~~~ 165 (955)
+ ..+.+..+...++++|.+...|..|| +.++++.+.+++ ++...+..++-.+..++..+++.+.
T Consensus 92 E----~~nQlaiQ~AvlisrIARlDyPreWP--~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL------ 159 (978)
T KOG1993|consen 92 E----ENNQLAIQNAVLISRIARLDYPREWP--DLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL------ 159 (978)
T ss_pred c----chhHHHHHHHHHHHHHHhcCCCccch--hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH------
Confidence 3 34678888999999999999988888 677777665543 3445666677788888888877442
Q ss_pred hHhhhhhcchhchHHHHHHHHHHHh
Q 002190 166 HRRVACSFRDQSLFQIFQISLTSLG 190 (955)
Q Consensus 166 h~k~~~~f~~~~L~~if~~~~~~L~ 190 (955)
.+++..|.+. -+.|+......+-
T Consensus 160 -~a~rk~F~el-~~~I~~~l~~~l~ 182 (978)
T KOG1993|consen 160 -LADRKAFYEL-APEILTILAPILW 182 (978)
T ss_pred -hhhhHHHHHH-hHHHHHHHHHHHh
Confidence 2344446554 5666664444443
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.5 Score=55.20 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHh
Q 002190 19 DSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSLALQLRLDIRNYLINYLAK 90 (955)
Q Consensus 19 ~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~-------~~l~~~~k~~ir~~ll~~l~~ 90 (955)
|+..|..||+.|.++.+.|.....|-+|+... -...++--|+--+++.|.| ...+++++.+.|.++.+-+..
T Consensus 16 da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lienil~ 95 (970)
T COG5656 16 DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILD 95 (970)
T ss_pred CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999776 5688999999999999886 357788999999999999987
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhccCC-ChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhc
Q 002190 91 RGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 91 ~~~~~~~~v~~~l~~~la~i~K~~W~~-~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~e 153 (955)
.+...|.-.|..+...+..|.--+||. -|+ +.+....++.++...+...||..+.++-.-
T Consensus 96 v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfka 156 (970)
T COG5656 96 VFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFKA 156 (970)
T ss_pred HHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence 666666677778888899999999994 475 566667777656667889999888887644
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.83 E-value=0.053 Score=64.50 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=111.0
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------cCC
Q 002190 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSL 72 (955)
Q Consensus 1 ~~~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~-------~~l 72 (955)
|++++.++++-.. . ++++..++.||+.|.++...++.--+...|--.. .+-..+.-|+--+++.|.+ +.+
T Consensus 1 M~~~~vv~~~~~a-q-s~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA-Q-SPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh-c-CCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 5566666555432 2 2344678999999999998888888888877666 4556677777778888763 568
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHh
Q 002190 73 ALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (955)
Q Consensus 73 ~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (955)
.++++.-||.-++..+.+. + .+..-+...++++|.+..+|+.|| +.++++...+++.+...+...+..+..++.
T Consensus 79 ~p~e~v~IR~~l~~lii~s-~---n~l~iq~a~avs~IA~~DfPdeWp--TL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk 152 (947)
T COG5657 79 LPDENVLIRDELFSLIISS-S---NQLQIQNALAVSRIARLDFPDEWP--TLVPDLLSLLSEKDMVTNENSLRVLHHIFK 152 (947)
T ss_pred CCccchHHHHHHHHHHHcc-c---chHHHHHHHHHHHHHhccCcccch--hHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 8888889999999999875 2 233337788999999999999999 899999998876556666667777777776
Q ss_pred ccc
Q 002190 153 EMN 155 (955)
Q Consensus 153 ef~ 155 (955)
++.
T Consensus 153 ~~r 155 (947)
T COG5657 153 RLR 155 (947)
T ss_pred HHh
Confidence 654
No 19
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.01 E-value=19 Score=43.77 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHhhccCcccHHHHHHH-HhcCCChhHHHHHHHHHHHHHhh------------cCCCHHHHHHHHHHH
Q 002190 18 QDSVERAHAENTLKCFSVNTDYISQCQFI-LDNALTPYALMLASSSLLKQVTE------------HSLALQLRLDIRNYL 84 (955)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~~~~I-L~~S~~~~~~f~a~~~L~~~i~~------------~~l~~~~k~~ir~~l 84 (955)
++...|.+||..|.++.-.++.-...-.+ ...-.+-..+-+|+-.|++.|.. ...+++.|.-||+-+
T Consensus 16 ~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~L 95 (1005)
T KOG2274|consen 16 ADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQL 95 (1005)
T ss_pred CChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHH
Confidence 45678999999999997555543333333 33334555566677778887763 125667788889888
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcc
Q 002190 85 INYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEM 154 (955)
Q Consensus 85 l~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef 154 (955)
++.+. +.++.+++...-.+..|..-.|||.|| +.++-+.+.+..++..+..-++..|.++..|.
T Consensus 96 l~~l~----~sn~ki~~~vay~is~Ia~~D~Pd~Wp--Elv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 96 LNLLD----DSNSKIRSAVAYAISSIAAVDYPDEWP--ELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred Hhhhh----ccccccchHHHHHHHHHHhccCchhhH--HHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 88876 345678888989999999999999998 77888877775455555555566666666553
No 20
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=76 Score=36.65 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhc
Q 002190 532 CELSKQRLDRAILTFFQHFRKSYVG 556 (955)
Q Consensus 532 ~~~s~~~l~~a~l~Fl~~~~~~yl~ 556 (955)
...|+| +.++++|+|-.|.-+|..
T Consensus 355 ~i~s~p-~~~~lmkaLvl~gfa~~d 378 (748)
T KOG4541|consen 355 SIFSPP-LMEALMKALVLWGFAYLD 378 (748)
T ss_pred cccCch-HHHHHHHHHHHHHHHHhh
Confidence 345645 999999999999998875
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=84.30 E-value=89 Score=36.34 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHhhccCcccHHH----HHHHHhcCCChhHHHHHHHHHHHHHhh-------------cCCCHHHHHH
Q 002190 17 SQDSVERAHAENTLKCFSVNTDYISQ----CQFILDNALTPYALMLASSSLLKQVTE-------------HSLALQLRLD 79 (955)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~~~~~~~~----~~~IL~~S~~~~~~f~a~~~L~~~i~~-------------~~l~~~~k~~ 79 (955)
+||+..|..||+.|.++++ .|.-++ ++.+-+..+++|.++.|.-+|++.+.. -.++.+.|++
T Consensus 16 spD~n~rl~aE~ql~~l~~-~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q 94 (858)
T COG5215 16 SPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ 94 (858)
T ss_pred CCCCCccccHHHHHHHhcc-ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence 4566779999999999964 444332 233335568899999999999999762 1356666667
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-hhhhhHHHHHHH
Q 002190 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLVKESTN 130 (955)
Q Consensus 80 ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~-~~~~~~i~~i~~ 130 (955)
+|.-.+.-+. ...+...+...+++|.|.+.+-|.. || .+++++..
T Consensus 95 vK~~al~aL~----s~epr~~~~Aaql~aaIA~~Elp~~~wp--~lm~~mv~ 140 (858)
T COG5215 95 VKGMALRALK----SPEPRFCTMAAQLLAAIARMELPNSLWP--GLMEEMVR 140 (858)
T ss_pred HHHHHHHHhc----CCccHHHHHHHHHHHHHHHhhCccccch--HHHHHHHH
Confidence 7766666553 3345567788899999999998775 66 56665543
No 22
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=72.62 E-value=1.9e+02 Score=33.43 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=53.6
Q ss_pred ccccccchhhHHHHHHHHHHhc--CCChHHHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccch
Q 002190 645 EEYRCSRSRTTFYYTIGWLIFM--EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRR 722 (955)
Q Consensus 645 ~~~~~~k~r~~~y~al~~i~~~--~~~~~~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~ 722 (955)
.+|.+++.-|-++|++|-++-. +...+....|-..+--.|..|.+++..-|- |-+ -+|...+-+++. -..+ ..
T Consensus 81 kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~-PYv-fQIla~Lle~~~-~~~~--p~ 155 (435)
T PF03378_consen 81 KNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFI-PYV-FQILAQLLELRP-SSPL--PD 155 (435)
T ss_dssp TS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTH-HHH-HHHHHHHHHHSS---S----T
T ss_pred hCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHcCC-CCCC--cH
Confidence 3477788889999999999732 233443333333344444555444433331 221 223333333333 1112 12
Q ss_pred hHHHHHHHHhhcchHHHHHhhhhhcCCCcchHHHHHHHHHHHhccccee
Q 002190 723 TYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRL 771 (955)
Q Consensus 723 ~~~~~f~~i~~~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri 771 (955)
.|..+|..+... ..| ..+..+.++.||+..++...+..+
T Consensus 156 ~y~~L~~~Ll~p---------~lW-e~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 156 AYKQLFPPLLSP---------ALW-ERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp TTGGGHHHHTSG---------GGG-GSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHcCc---------chh-ccCCCcCcHHHHHHHHHHhCchhh
Confidence 344444432211 124 455677899999999998654444
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.73 E-value=1.7e+02 Score=32.10 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=80.3
Q ss_pred HHHHhhcc--CcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 002190 28 NTLKCFSV--NTDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLDIRNYLINYLAKRGPELQSFVTASLI 104 (955)
Q Consensus 28 ~~L~~f~~--~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~ 104 (955)
+.+..+.. .+++|.....+|+++ +.+++-.|+..|..++.. +.-......++-+++++++.+.....+.-+..-..
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av 171 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAV 171 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHH
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHH
Confidence 34444443 233688777766655 999999999999988886 33333323466688888887653333333445556
Q ss_pred HHHHHHHhhccCC--ChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCCCCchHHhHhhhhhcchhchHHHH
Q 002190 105 QLLCRLTKFGWFD--DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIF 182 (955)
Q Consensus 105 ~~la~i~K~~W~~--~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if 182 (955)
++++.+++..=.- -|. .+.++.+...+..........+++++=..+..+=- ..+..+....|.+.. ++
T Consensus 172 ~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl------LSF~~~~~~~~~~~~---~i 241 (312)
T PF03224_consen 172 QCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL------LSFEPEIAEELNKKY---LI 241 (312)
T ss_dssp HHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHH------HTTSHHHHHHHHTTS---HH
T ss_pred HHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH------HhcCHHHHHHHhccc---hH
Confidence 6777777532100 011 12334444444111111222333333333322100 011223333343433 55
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhHhcc
Q 002190 183 QISLTSLGQLKSDVASRLQELALSLCLKCLS 213 (955)
Q Consensus 183 ~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls 213 (955)
...+++++.... ++++.-++.++.++++
T Consensus 242 ~~L~~i~~~~~K---EKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 242 PLLADILKDSIK---EKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHH--S---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccc---chHHHHHHHHHHHHHh
Confidence 556666665544 5677777877777774
No 24
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.48 E-value=5e+02 Score=29.73 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHH
Q 002190 123 DLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQE 202 (955)
Q Consensus 123 ~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~ 202 (955)
.+++.+.+.+. +++....+-+-+..++.+... -++...|--.|.-+ =+++|...+..|-+...+.......
T Consensus 271 ~~~~~L~~lL~--~~~~g~~aA~~f~il~~d~~~---~l~~~~~a~vklLy----kQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLS--SPELGQQAAKAFGILLSDSDD---VLNKENHANVKLLY----KQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred HHHHHHHHHhC--ChhhHHHHHHHHhhHhcCcHH---hcCccccchhhhHH----hHHHHHHHHHHHHHHHhhcChhhHH
Confidence 56666766664 343334444445555555211 12223454555333 4667777666665443221111222
Q ss_pred HHHHHHhHhccccccccCCCCCcCccccccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCC
Q 002190 203 LALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTN 282 (955)
Q Consensus 203 ~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~ 282 (955)
..|..+-.+|.+.|......+ =++++.++.+-....+++....++++|..+.. .+
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~-------------------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~------~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPE-------------------LPTLLPLLLQSLSLPDADVLLSSLETLKMILE------EA 396 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHH-------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------cC
Confidence 344444455555553221111 04578888877665667788889999888774 22
Q ss_pred hHHHHHHHHHHHHHHH
Q 002190 283 DAARSKFLAHLMTGTK 298 (955)
Q Consensus 283 ~~~~~~~l~~~l~~~~ 298 (955)
++....|+..++..+.
T Consensus 397 ~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 397 PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445567777776554
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=43.04 E-value=83 Score=26.57 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLIN 86 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir~~ll~ 86 (955)
++.+.+.+-+.+++..|..|=..|.++. +++..+.....+ ++.++.++..|+.+|.+. +. .+....+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i------~~---~~~~~~L~~ 69 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI------GD---PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC------HH---HHTHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh------CC---HHHHHHHHH
Confidence 4567777767777888999999998775 678888888888 679999999998888532 21 123344444
Q ss_pred HHHhcCCCchHHHHHHHHHHH
Q 002190 87 YLAKRGPELQSFVTASLIQLL 107 (955)
Q Consensus 87 ~l~~~~~~~~~~v~~~l~~~l 107 (955)
.+.. +....|+......+
T Consensus 70 ~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC----SSHHHHHHHHHHH
T ss_pred HHcC---CCcHHHHHHHHhhc
Confidence 4332 22456666665554
No 26
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=40.00 E-value=8.7e+02 Score=30.69 Aligned_cols=196 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhc--cCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 002190 5 AQLEALCERLYNSQDSVERAHAENTLKCFS--VNTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIRN 82 (955)
Q Consensus 5 ~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~--~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir~ 82 (955)
+.+....-.-+++|..+.+..|-..|.... +.+.++++...-. -+.++-||.-+..|++.|.+ -+.+....--.
T Consensus 856 ~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi--~sqpk~QyLLLhSlkevi~~--~svd~~~~~v~ 931 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQI--ESQPKRQYLLLHSLKEVIVS--ASVDGLKPYVE 931 (1233)
T ss_pred hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHH--hcchHhHHHHHHHHHHHHHH--hccchhhhhHH
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCCCCc
Q 002190 83 YLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLP 162 (955)
Q Consensus 83 ~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~~~~ 162 (955)
-+|..+.+++...+-..|+-+..++..++--+ +. ..+..+...+.++++.+....+....-.+.+=-+.---+-
T Consensus 932 ~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e----pe--sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~l 1005 (1233)
T KOG1824|consen 932 KIWALLFKHCECAEEGTRNVVAECLGKLVLIE----PE--SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLL 1005 (1233)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhHHhCC----hH--HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHH
Q ss_pred hHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhc
Q 002190 163 STHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCL 212 (955)
Q Consensus 163 ~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~L 212 (955)
..+.-+.-+.|||. =..+=+.++.++..+.++.| +++...+.-+.--|
T Consensus 1006 k~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKp-slIrDllpeLLp~L 1053 (1233)
T KOG1824|consen 1006 KQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKP-SLIRDLLPELLPLL 1053 (1233)
T ss_pred HHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCH-hHHHHHHHHHHHHH
No 27
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.96 E-value=6.1e+02 Score=29.56 Aligned_cols=207 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHhhhhhh-hccchhHHHHHHHHhhcchHHHHHhhhhhcCCCcchHHHHHHHHHHHhcccceeeec
Q 002190 696 RTDAVKCALIGLMRDLRGIAMA-TNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFD 774 (955)
Q Consensus 696 ~~~~~~~~i~~~l~~l~Gi~~a-~~~~~~~~~~f~~i~~~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~~~ 774 (955)
+..++|.....++..+..--.. ... .-..+|.-+ .-+..|+.....|+.+..+++ .+..|.+
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~~~~~--~R~~fF~~I-------------~~~~~~~d~~~~l~aL~~LT~-~Grdi~~- 103 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDSSSGL--MRAEFFRDI-------------SDPSNDDDFDLRLEALIALTD-NGRDIDF- 103 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccccccHH--HHHHHHHHH-------------hcCCCchhHHHHHHHHHHHHc-CCcCchh-
Q ss_pred CCCcchhHHHHHHHHHH--HHHHHhhhcCCCcchhhhhhh-----hhHHHHHHHHHHhhcCCccccccccccCCCcHHHH
Q 002190 775 SSSPNGILLFREVSKLI--VAYGSRVLSLPNAADIYAYKY-----KGMWICFTILARALAGNYVNFGVFELYGDRALSDA 847 (955)
Q Consensus 775 ~~s~~~~~lf~~~~~il--~~y~~~~~~~~~~~~~~~e~~-----k~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~ 847 (955)
-..+-+-+|-+++..+. ...++................ +.+.-++..+.+++. .|+..++ ++.+..+
T Consensus 104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviK---fn~~~l~---e~~i~~l 177 (464)
T PF11864_consen 104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIK---FNFNYLD---EDEISSL 177 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHh---cCCCCCC---HHHHHHH
Q ss_pred HHHHHHHhcccCh-hhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhccccccc
Q 002190 848 LDIALKMTLSIPL-ADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQV 926 (955)
Q Consensus 848 l~~~l~l~l~ip~-~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l 926 (955)
+..++.++...-. +|+ +.-.++++++...-. +|++.+..++..|+...... +.++.+-++ +
T Consensus 178 v~~i~~iC~~Ts~~~di-------~~~L~vldaii~y~~-----iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~----m 239 (464)
T PF11864_consen 178 VDQICTICKSTSSEDDI-------EACLSVLDAIITYGD-----IPSESLSPCIEVLCSIVNSV--SLCKPSWRT----M 239 (464)
T ss_pred HHHHHHHHhccCcHHHH-------HHHHHHHHHHHHcCc-----CChHHHHHHHHHHhhHhccc--ccchhHHHH----H
Q ss_pred ccccceeeccccccccc
Q 002190 927 ICLCPFRFSLECLVSVC 943 (955)
Q Consensus 927 ~~l~~~~~~~~~~~~~~ 943 (955)
.||..-+..+.....-|
T Consensus 240 ~nL~~S~~g~~~i~~L~ 256 (464)
T PF11864_consen 240 RNLLKSHLGHSAIRTLC 256 (464)
T ss_pred HHHHcCccHHHHHHHHH
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=39.92 E-value=2.9e+02 Score=32.57 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=80.3
Q ss_pred cCCCHHHHHHHHHHHHhhc-cCcccHHHHHHHHhc---CCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhc
Q 002190 16 NSQDSVERAHAENTLKCFS-VNTDYISQCQFILDN---ALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKR 91 (955)
Q Consensus 16 ~~~~~~~r~~Ae~~L~~f~-~~~~~~~~~~~IL~~---S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir~~ll~~l~~~ 91 (955)
.+++...|+.+--.+..+. ++|+....+-.-|.+ ++|++.+-.|+.+|-+.. +++-...+-..+.+.+..
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~- 125 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSD- 125 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHS-
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcC-
Confidence 3456677777777777666 456644444444433 578888888888876653 334444455555555442
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccCCChhhhh-HHHHHHHHHhcccchhHHHHHHHHHHH
Q 002190 92 GPELQSFVTASLIQLLCRLTKFGWFDDDRFRD-LVKESTNFLSQATSDHYAIGLKILNQL 150 (955)
Q Consensus 92 ~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~-~i~~i~~~l~~~~~~~~~~gl~lL~~l 150 (955)
..++||.+.+.++..+.+. .|+.- +. +++.+.+++...++.-..-++.++.++
T Consensus 126 ---~~~~VRk~A~~~l~~i~~~-~p~~~--~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 126 ---PSPYVRKKAALALLKIYRK-DPDLV--EDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---SSHHHHHHHHHHHHHHHHH-CHCCH--HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 2459999999999999998 33332 23 688888888655556666677777776
No 29
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=39.63 E-value=62 Score=30.35 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHH
Q 002190 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQF 45 (955)
Q Consensus 4 l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~ 45 (955)
++-|..++.++|+.++.+.+++.-+-|-+|.-+|-+|...++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq 56 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ 56 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH
Confidence 566888999999988878888888889999999999987665
No 30
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.76 E-value=3.6e+02 Score=28.78 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhcc-ccccccCCCCCcCccccccCCCcccccccCcchHHHHHHHHhh
Q 002190 178 LFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLS-FDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAI 256 (955)
Q Consensus 178 L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls-w~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~ 256 (955)
++++|=.++-.|+... +.-...+++++.++|. -++. ++...+...-..|..|. .-.-+++.+++++-.
T Consensus 5 ~pQlFW~~vAcL~S~~----E~EF~~aL~lL~~~l~k~dl~----~~~~~~~L~~~~p~~we-~~~f~Glq~Ll~KGL-- 73 (262)
T PF14225_consen 5 FPQLFWTAVACLESIH----EHEFLEALSLLNKLLDKLDLD----DPDVRDVLESSQPQLWE-WGNFEGLQPLLLKGL-- 73 (262)
T ss_pred hhHHHHHHHHhhcCCc----HHHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHhCCcccc-CCCchhHHHHHhCcc--
Confidence 7888888888887654 2455578888888875 2221 11111112223455564 112245666666543
Q ss_pred cCCcchHHHHHHHHHHhccc-cCCCCChHHHHHHHHHHHHHHHHHhhcCcC---CCCcchHHHHHHHHHHhhhhcchhhh
Q 002190 257 TEAPLSKEALECLVRLASVR-RSLFTNDAARSKFLAHLMTGTKEILQTGQG---LADHDNYHEYCRLLGRFRVNYQLSEL 332 (955)
Q Consensus 257 ~~~~l~~~~l~cL~~l~sl~-~~~f~~~~~~~~~l~~~l~~~~~il~~~~~---l~~~e~~~~~~~ll~rl~~~~~~~~l 332 (955)
..+.-...+++.|..+..+. ..++.+.+. +++-.++..+..++..-.. +...+...+.+..+.++....+...|
T Consensus 74 ~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~--rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L 151 (262)
T PF14225_consen 74 RSSSTYELTLRLLSRLTPLPDDPLIGDSQS--RLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL 151 (262)
T ss_pred CCCCcHHHHHHHHHHHhcCCCccccCCCCc--cHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH
Confidence 23456677888888888775 334433322 5666777766666553211 11123345788888888887766666
Q ss_pred hcc
Q 002190 333 VNV 335 (955)
Q Consensus 333 ~~~ 335 (955)
.+.
T Consensus 152 a~i 154 (262)
T PF14225_consen 152 ARI 154 (262)
T ss_pred HHH
Confidence 554
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.09 E-value=1e+03 Score=30.61 Aligned_cols=291 Identities=13% Similarity=0.119 Sum_probs=145.1
Q ss_pred HHHHHHHHHhccccchhhhccch-hHHHHHHhcccCCCCCcccccccchhhHHHHHHHHHH--hcCCChHHHHHhhHHHH
Q 002190 605 HTLSLFLELASGYMTGKLLLKLD-TIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLI--FMEESPVKFKSSMDPLL 681 (955)
Q Consensus 605 ~~~~Ll~~l~~~~~~~~~l~~~~-~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~i~--~~~~~~~~~~~~l~p~~ 681 (955)
+..++..+++++ ..| .|-++++..-. ... ..+...|..-...++.+- +.+. +..++.-+.
T Consensus 99 k~~dviAeia~~--------~l~e~WPell~~L~q----~~~-S~~~~~rE~al~il~s~~~~~~~~----~~~~~~~l~ 161 (1075)
T KOG2171|consen 99 KLADVIAEIARN--------DLPEKWPELLQFLFQ----STK-SPNPSLRESALLILSSLPETFGNT----LQPHLDDLL 161 (1075)
T ss_pred HHHHHHHHHHHh--------ccccchHHHHHHHHH----Hhc-CCCcchhHHHHHHHHhhhhhhccc----cchhHHHHH
Confidence 336666666653 122 47777755422 122 222446655555655552 2211 222333333
Q ss_pred HHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhcchHHHHHhhhhhcCCCcchHHHHHHHH
Q 002190 682 QVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMA 761 (955)
Q Consensus 682 ~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~~~l~~~y~~~~~v~~~iLkl~~ 761 (955)
..|.+-++.| ..+ +| +..+|.+.+++.-......-...|..+.|.++.++...++. ++.+....+|+.+.
T Consensus 162 ~lf~q~~~d~----s~~-vr---~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 162 RLFSQTMTDP----SSP-VR---VAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--GDDDAAKSALEALI 231 (1075)
T ss_pred HHHHHhccCC----cch-HH---HHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc--cchHHHHHHHHHHH
Confidence 3344333333 111 33 34457778888877533456667777888777777777653 55555667777777
Q ss_pred HHHhcccceee--e----------cCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHHHHhhcC-
Q 002190 762 EFVLNKAQRLT--F----------DSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAG- 828 (955)
Q Consensus 762 ~~~~n~~~ri~--~----------~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~- 828 (955)
|++..-..-+. + -.+..-.-........++..+.+..-.. .++ .-...-..+..++.+++....-
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~-~k~-~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM-CKK-LALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH-hhh-chhhhccHHHHHHHhcCCcccch
Confidence 77764311110 0 0000000112222233444443321000 000 0112222334444444443321
Q ss_pred Ccccccccc--ccCCCcHHHHHHHHHH-HhcccCh--------h---hHHh--hHHHHHHHHHHHHHHHhhhHHhhhcCC
Q 002190 829 NYVNFGVFE--LYGDRALSDALDIALK-MTLSIPL--------A---DILA--FRKLTKAYFAFLEVLFSSHITFILNLN 892 (955)
Q Consensus 829 ~~vnfg~~~--~y~d~~~~~~l~~~l~-l~l~ip~--------~---dl~~--yPkl~~~~f~ll~~~~~~~~~~l~~l~ 892 (955)
+|.|=...+ -+++|. .+..-.+. +-+.+|. + .+++ -+|.|++-.--|..+.+-|++.+..
T Consensus 310 ew~~~d~~ded~~~~~~--~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-- 385 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPY--RAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-- 385 (1075)
T ss_pred hhccccccccccccCcH--HHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH--
Confidence 121111100 011121 11222222 2222221 1 1111 3577888888889999999998764
Q ss_pred hHHHHHHHHHHHHhhccccHHHHhhhhcccccccccccceee
Q 002190 893 TNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLCPFRF 934 (955)
Q Consensus 893 ~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~~~~~ 934 (955)
.+-.++..+..||+..++-|---+|.+ ++.+++-+-
T Consensus 386 --~l~~Il~~Vl~~l~DphprVr~AA~na----igQ~stdl~ 421 (1075)
T KOG2171|consen 386 --NLPKILPIVLNGLNDPHPRVRYAALNA----IGQMSTDLQ 421 (1075)
T ss_pred --HHHHHHHHHHhhcCCCCHHHHHHHHHH----HHhhhhhhc
Confidence 567899999999999999999999999 988887653
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=34.56 E-value=1.5e+02 Score=24.97 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 002190 6 QLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSL 63 (955)
Q Consensus 6 ~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L 63 (955)
.++.+.+.+ ..+++..|.+|-..|..+. +++.++.....++++.+..++..|+.+|
T Consensus 32 ~~~~L~~~l-~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 32 AIPALIELL-KDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHH-TSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 344455544 5667788999999999886 5899999999999999888898888776
No 33
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.85 E-value=7.6e+02 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcccCCCC---chHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhc
Q 002190 580 LLLNVIVGKIATNLKCYTE---SQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANH 636 (955)
Q Consensus 580 ~~~~~~l~ki~~~L~~~~~---~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~ 636 (955)
..+..|++-+...|..++. .+.++..+++.|..++++.........-|.++.|++..
T Consensus 133 ~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~V 192 (370)
T PF08506_consen 133 PFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKV 192 (370)
T ss_dssp HHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHh
Confidence 4555666666666655553 35688899999988776543332333445667777654
No 34
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=31.72 E-value=69 Score=24.50 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhcccccccccc
Q 002190 867 RKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICL 929 (955)
Q Consensus 867 Pkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l 929 (955)
|..|.+-...|..+.+.+++.+. .....++..+...|++.+.+|...++.+ |.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~a----Lg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWA----LGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHH----HHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHH----HhcC
Confidence 55666666677666666666543 2677888999999999889999999888 6653
No 35
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=31.46 E-value=83 Score=31.06 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhccc-cCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCcchHHHHHHHHHHhhhhcc
Q 002190 261 LSKEALECLVRLASVR-RSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQ 328 (955)
Q Consensus 261 l~~~~l~cL~~l~sl~-~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~ll~rl~~~~~ 328 (955)
-+..++++|..+..++ .-+|....++..|+.-+.+-+..+++++..+.+...-..+.++|+-.+..|.
T Consensus 97 q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~if~il~~~vk~h~ 165 (171)
T PF12922_consen 97 QRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAIFRILGTAVKKHN 165 (171)
T ss_pred HHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHHHHHHHHHHHHcc
Confidence 4556777777777766 4568777788899988888888888877666666555568888888888774
No 36
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=30.15 E-value=50 Score=32.46 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhccccccccccc
Q 002190 868 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLC 930 (955)
Q Consensus 868 kl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~ 930 (955)
++|+..|+++..+.+.++..+ + ...+++.+..||+. +.+|-..|+.. +..++
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~----l~kl~ 93 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLM----LSKLA 93 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHH----HHHHH
Confidence 478889999999988766544 2 55679999999999 99999999988 55543
No 37
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.02 E-value=1.2e+03 Score=28.78 Aligned_cols=60 Identities=8% Similarity=0.128 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHh
Q 002190 73 ALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLS 133 (955)
Q Consensus 73 ~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~ 133 (955)
++.-+..+..|++.+++-.-.+.-.|.+++.|..++.+ --+|.|.....+..+.+.+-++
T Consensus 450 ~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~ 509 (970)
T COG5656 450 MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLK 509 (970)
T ss_pred CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHh
Confidence 45566678888999887332344589999999999998 8889998654455566655554
No 38
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.84 E-value=1.5e+03 Score=33.37 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=72.1
Q ss_pred chhhhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccCh-----------------hhHHhhH
Q 002190 805 ADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPL-----------------ADILAFR 867 (955)
Q Consensus 805 ~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~-----------------~dl~~yP 867 (955)
...|.+.+..+-.++++++++++| ++. ..--+.+.|+++.+|. .-+-..|
T Consensus 668 d~ly~e~lplL~~lLe~ln~l~~~----------~~s---~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs~ 734 (3550)
T KOG0889|consen 668 DSLYREVLPLLPNLLEILNHLLSS----------FHS---QGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGSP 734 (3550)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhc----------cCc---cchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCCH
Confidence 345888888888999999999886 112 2223344444444442 3444578
Q ss_pred HHHHHHHHHHHHHHh-hhHHhhhcCChHHHHHHHHHHHHhhccc-cHHHHhhhhcccccccccccceee
Q 002190 868 KLTKAYFAFLEVLFS-SHITFILNLNTNTFMHIVGSLESGLKGL-DTNISSQVYAQKWHQVICLCPFRF 934 (955)
Q Consensus 868 kl~~~~f~ll~~~~~-~~~~~l~~l~~~~f~~~~~sl~~gl~~~-~~~i~~~~l~~~~~~l~~l~~~~~ 934 (955)
++..+=+.-++.... ..|+++-.+=...-..+|.++-.+++-. +..++..|..+ ++.++..--
T Consensus 735 ~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rI----LGKlgG~NR 799 (3550)
T KOG0889|consen 735 ELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRI----LGKLGGRNR 799 (3550)
T ss_pred HHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH----HHhhcCcch
Confidence 888887777776655 4566665432334455666666666654 56688888888 988887643
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=25.06 E-value=1.4e+03 Score=28.49 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhhcc-Ccc-cHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcC
Q 002190 17 SQDSVERAHAENTLKCFSV-NTD-YISQCQFILDN--ALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRG 92 (955)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~-~~~-~~~~~~~IL~~--S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir~~ll~~l~~~~ 92 (955)
+++.+.|+..--.|..+.+ +|+ +.-.+-.+... +.|++++=.|+.+|-.+ .. .++-+++...+.+.-
T Consensus 79 S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I------r~---~~i~e~l~~~lkk~L 149 (746)
T PTZ00429 79 STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI------RV---SSVLEYTLEPLRRAV 149 (746)
T ss_pred CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC------Cc---HHHHHHHHHHHHHHh
Confidence 3455566666666665553 454 33333333322 24555555554444222 11 124566777666655
Q ss_pred CCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHh
Q 002190 93 PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (955)
Q Consensus 93 ~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (955)
.+..+|||.+...+++++.+.. ++.-+...+++++..++...++....-++..|.++.+
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 6677999999999998887643 2211122577888778765566666677777777754
No 40
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.50 E-value=1.2e+03 Score=26.67 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhh-ccCcccHHHH--------HHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHH
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCF-SVNTDYISQC--------QFILDNALTPYALMLASSSLLKQVTEHSLALQLR 77 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f-~~~~~~~~~~--------~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k 77 (955)
+.+++.. +.++|+.+|+....+|... .+-++.-... ...+..+...+..-..+.++.+.++. ++..-|
T Consensus 135 i~~Ll~l-~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g--f~~plk 211 (409)
T PF01603_consen 135 IKKLLEL-FDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING--FAVPLK 211 (409)
T ss_dssp HHHHHHT-TTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT----SS--
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc--cCCCCc
Confidence 3445533 4567888999988888663 2222222222 22233445555555555555555554 444556
Q ss_pred HHHHHHHHHHHHhcC--CCchHHHHHH--------------HHHHHHHHHhhccCCChhh--hhHHHHHHHHHhcccc-h
Q 002190 78 LDIRNYLINYLAKRG--PELQSFVTAS--------------LIQLLCRLTKFGWFDDDRF--RDLVKESTNFLSQATS-D 138 (955)
Q Consensus 78 ~~ir~~ll~~l~~~~--~~~~~~v~~~--------------l~~~la~i~K~~W~~~~~~--~~~i~~i~~~l~~~~~-~ 138 (955)
.+.+.|+.+.++-.+ +... ..-.+ +...+..-+-+-||-.+.. --|+.++...+....+ +
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~-~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLS-SYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGG-GTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 666666666665321 1111 11122 2223333444679876432 2578888888764333 3
Q ss_pred hHHHHHHHHHHHHhcccCCC
Q 002190 139 HYAIGLKILNQLVSEMNQPN 158 (955)
Q Consensus 139 ~~~~gl~lL~~lv~ef~~~~ 158 (955)
-..+.-.+..-+....++..
T Consensus 291 f~~i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 44455556666666666654
No 41
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.01 E-value=4.6e+02 Score=24.91 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=34.8
Q ss_pred HhcCCChhHHHHHHHHHHHHHhh--cCC--CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 002190 47 LDNALTPYALMLASSSLLKQVTE--HSL--ALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLC 108 (955)
Q Consensus 47 L~~S~~~~~~f~a~~~L~~~i~~--~~l--~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la 108 (955)
|..++|+.++.+|++.|+..+++ ..+ ....|.-+.+.+...+..+ .+.+.-|++++..++-
T Consensus 47 l~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~-~~~~~~Vk~kil~li~ 111 (141)
T cd03565 47 LNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK-NNPPTIVQEKVLALIQ 111 (141)
T ss_pred HccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-CCCcHHHHHHHHHHHH
Confidence 34467899999999999999987 211 1122222222244443322 2345568877766543
No 42
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=21.64 E-value=3.5e+02 Score=23.88 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=47.1
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCcchHHHHHHHHHHhh
Q 002190 245 STLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFR 324 (955)
Q Consensus 245 ~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~ll~rl~ 324 (955)
++++.++..+.-.++..+-.+.++|.+++-.. .++...|+..++.++..++.. .++.....++++.|+.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~------~~~~l~~f~~IF~~L~kl~~D-----~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA------RGEILPYFNEIFDALCKLSAD-----PDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHh
Confidence 35666666654445667888999999998543 245567888888888877763 2334556778877764
No 43
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.73 E-value=7.2e+02 Score=23.43 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=35.3
Q ss_pred CCChhHHHHHHHHHHHHHhh--cCCCHH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 002190 50 ALTPYALMLASSSLLKQVTE--HSLALQ-LRLDIRNYLINYLAKRGPELQSFVTASLIQLLC 108 (955)
Q Consensus 50 S~~~~~~f~a~~~L~~~i~~--~~l~~~-~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la 108 (955)
+.|+.++..|+..|..++++ ..+-.+ -+...-+.+...+..........|++++..++.
T Consensus 53 ~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 53 HGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp TSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 48999999999999999987 222111 111233445555544422211338888877655
No 44
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.58 E-value=5.5e+02 Score=27.36 Aligned_cols=106 Identities=17% Similarity=0.079 Sum_probs=57.0
Q ss_pred HHHhcccCCCCCCchHHhHh-hhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCc
Q 002190 149 QLVSEMNQPNPGLPSTHHRR-VACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEE 227 (955)
Q Consensus 149 ~lv~ef~~~~~~~~~~~h~k-~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~ 227 (955)
.+..-|++.+. .+.....+ ....+++.++++.-..++..|-+...+.+..+...+++++..++...-..
T Consensus 153 ~il~~ya~~~f-r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--------- 222 (262)
T PF14225_consen 153 RILSSYAKGRF-RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--------- 222 (262)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC---------
Confidence 44444554444 22232233 33455565554432222222222222223456667787776666421110
Q ss_pred cccccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCC
Q 002190 228 FGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSL 279 (955)
Q Consensus 228 ~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~ 279 (955)
-| ..++++.-+.++ ...+++..|++.|..+.++.|+.
T Consensus 223 -----~~-------~~~dlispllrl---L~t~~~~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 223 -----SP-------HGADLISPLLRL---LQTDLWMEALEVLDEIVTRSGSP 259 (262)
T ss_pred -----CC-------cchHHHHHHHHH---hCCccHHHHHHHHHHHHhhcccc
Confidence 11 345677766655 46789999999999999888765
Done!