Query 002190
Match_columns 955
No_of_seqs 163 out of 437
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 4.1E-59 1.4E-63 578.5 51.2 798 3-931 26-908 (1073)
2 4hat_C Exportin-1; heat repeat 100.0 1E-52 3.6E-57 525.2 59.3 803 3-931 14-882 (1023)
3 2x19_B Importin-13; nuclear tr 100.0 1.5E-37 5E-42 396.0 53.4 779 3-932 22-847 (963)
4 3m1i_C Exportin-1; heat repeat 100.0 1.9E-36 6.6E-41 387.3 61.3 803 3-930 14-881 (1049)
5 3ibv_A Exportin-T; karyopherin 100.0 2.8E-29 9.6E-34 314.0 64.6 810 3-932 4-871 (980)
6 2x1g_F Cadmus; transport prote 100.0 4.8E-29 1.6E-33 317.5 52.4 774 3-921 5-852 (971)
7 3a6p_A Exportin-5; exportin-5, 99.9 4.3E-23 1.5E-27 264.9 50.0 597 3-686 9-682 (1204)
8 1w9c_A CRM1 protein, exportin 99.7 8.7E-19 3E-23 184.9 7.9 156 752-931 45-200 (321)
9 1wa5_C Importin alpha RE-expor 99.7 4.3E-11 1.5E-15 151.6 64.1 616 1-765 1-670 (960)
10 4fdd_A Transportin-1; heat rep 99.7 3.4E-12 1.2E-16 159.8 53.1 579 3-766 11-616 (852)
11 2bpt_A Importin beta-1 subunit 99.5 1.8E-08 6.1E-13 126.2 60.3 145 4-155 3-167 (861)
12 1qgr_A Protein (importin beta 99.0 1.8E-05 6E-10 99.0 53.3 140 7-154 3-161 (876)
13 1ibr_B P95, importin beta-1 su 98.8 1E-06 3.6E-11 101.3 27.6 141 7-155 3-162 (462)
14 1u6g_C TIP120 protein, CAND1; 93.4 5.2 0.00018 51.4 24.3 242 4-302 5-265 (1230)
15 4db8_A Armadillo-repeat protei 53.6 1.7E+02 0.0059 28.7 15.3 193 36-274 10-209 (252)
16 4hxt_A De novo protein OR329; 51.2 1.8E+02 0.0062 28.3 19.5 227 7-277 4-244 (252)
17 3ul1_B Importin subunit alpha- 40.8 2E+02 0.0068 32.3 13.1 97 7-111 59-171 (510)
18 4b8j_A Importin subunit alpha- 37.7 4.6E+02 0.016 29.1 23.0 264 6-325 75-358 (528)
19 1wa5_B Importin alpha subunit; 35.8 5E+02 0.017 28.9 22.2 264 7-326 132-413 (530)
20 1b3u_A Protein (protein phosph 35.0 4.3E+02 0.015 29.5 15.1 70 246-327 243-312 (588)
21 4db8_A Armadillo-repeat protei 31.5 3.7E+02 0.013 26.1 15.8 225 7-274 14-251 (252)
22 2vgl_B AP-2 complex subunit be 29.4 2.1E+02 0.007 32.9 10.9 72 81-153 119-190 (591)
23 2vgl_A Adaptor protein complex 29.0 2.8E+02 0.0097 32.0 12.0 131 14-152 82-216 (621)
24 4ffb_C Protein STU2; tubulin f 28.8 4.6E+02 0.016 26.3 16.4 106 49-158 65-174 (278)
25 4hat_C Exportin-1; heat repeat 27.3 9.5E+02 0.033 29.5 18.5 81 244-327 754-835 (1023)
26 1elk_A Target of MYB1; superhe 25.5 1.4E+02 0.0047 27.7 6.8 59 47-108 62-126 (157)
27 4fdd_A Transportin-1; heat rep 23.6 9.7E+02 0.033 28.4 52.3 137 15-153 99-245 (852)
28 1xqr_A HSPBP1 protein; armadil 22.6 6.3E+02 0.022 25.8 12.3 147 2-152 25-196 (296)
29 1b3u_A Protein (protein phosph 22.0 8.3E+02 0.028 27.0 19.8 130 16-153 97-233 (588)
30 4hxt_A De novo protein OR329; 21.8 5.3E+02 0.018 24.6 17.1 232 40-327 4-243 (252)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=4.1e-59 Score=578.52 Aligned_cols=798 Identities=15% Similarity=0.206 Sum_probs=573.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
|++.||+++.++|+| ++++|++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|++ +.+|+++|.+|
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 689999999999987 478999999999999999999999999999999999999999999999996 88999999999
Q ss_pred HHHHHHHHHhcCCC-----chHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhccc
Q 002190 81 RNYLINYLAKRGPE-----LQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (955)
Q Consensus 81 r~~ll~~l~~~~~~-----~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~ 155 (955)
|+++++++.+.+.+ .++.+++|++.++|.|+|++||+.|| ++++++.+.++ .++.++..+|.+|..+.+|..
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp--~fi~dLv~~~~-~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP--TFISDIVGASR-TSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc--HHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH
Confidence 99999999874322 23677799999999999999999998 89999988874 466778888899888888843
Q ss_pred CC-CCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCC
Q 002190 156 QP-NPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (955)
Q Consensus 156 ~~-~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p 234 (955)
.. ...++..+..+.+..++.. ++.|++++..+|++..+ ..++..+|+++..+++|...+..
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~---~~lv~~~L~~L~~~~sWI~i~~i-------------- 243 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQN---APLVHATLETLLRFLNWIPLGYI-------------- 243 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTTTSCTHHH--------------
T ss_pred hcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHhcCHHHh--------------
Confidence 21 1112334445556667775 89999999888875432 36888999999999999886542
Q ss_pred CcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCC-------
Q 002190 235 SAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL------- 307 (955)
Q Consensus 235 ~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l------- 307 (955)
.+++++++++..+ ...+.++..|++||.++++.+.+-+ ++.....+..++..+..+++....+
T Consensus 244 -------~~~~ll~~L~~~~-L~~~~~r~aA~dcL~eIv~k~~~~~--~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~ 313 (1073)
T 3gjx_A 244 -------FETKLISTLIYKF-LNVPMFRNVSLKCLTEIAGVSVSQY--EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG 313 (1073)
T ss_dssp -------HSSSHHHHHHHHT-SSSHHHHHHHHHHHHHHHHSCSGGG--HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTC
T ss_pred -------ccchHHHHHHHHh-cCChHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHHHhcCCchhHHHHHhcc
Confidence 4466898874222 2567899999999999999752211 2233455666666666676643211
Q ss_pred --CCcchHHHHHHHHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCcccccCC--
Q 002190 308 --ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGD-- 383 (955)
Q Consensus 308 --~~~e~~~~~~~ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~~~~~~~-- 383 (955)
.|++..+++|+++..+.++|. ..+.+.|.+...+....++...+-... +.|.++++++||..++.++ |.+.+
T Consensus 314 ~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L-~~e~~~~ 389 (1073)
T 3gjx_A 314 KDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAEL-YRESPFS 389 (1073)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHH-HHHCCSC
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHH-Hhhcccc
Confidence 234566778999999999883 555555555555555444445443332 3578899999999998865 21110
Q ss_pred ---C-----------cch---hhhhHHHHHHHHHhccccccccccC-C-CCCCC---CCCCH---HHHHHHHhhhhhhhh
Q 002190 384 ---A-----------PSL---LDEFVPKITEGFITSRFNSVQAGFP-D-DLSDN---PLDNV---ELLQDQLDCFPYLCR 438 (955)
Q Consensus 384 ---~-----------~~~---l~~~~~~I~~~yi~~~l~~~~~~~~-e-e~~e~---~~~d~---~~~~~~le~i~~l~r 438 (955)
. +.. ...+..++.... .+||++|++++. | |.+|- ..+|. ..++.+.+++.++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vl-I~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~ 468 (1073)
T 3gjx_A 390 TSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLM-VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTH 468 (1073)
T ss_dssp CCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHH-HHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHH-HHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 0 111 233345666664 499999986543 3 22221 23443 356788899999999
Q ss_pred cchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHH
Q 002190 439 FQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQL 518 (955)
Q Consensus 439 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l 518 (955)
+.++++.+++++.+.+.++ .++++|+.++ .++|+++ ++.|.. .++.|+ ..|...+-.+
T Consensus 469 l~~~~~~~i~~~~l~~~~~-------~~~~sW~~le----a~~~aig---aIag~~------~~~~E~--~~Lp~vi~~L 526 (1073)
T 3gjx_A 469 LDYVDTEIIMTKKLQNQVN-------GTEWSWKNLN----TLCWAIG---SISGAM------HEEDEK--RFLVTVIKDL 526 (1073)
T ss_dssp HCHHHHHHHHHHHHHHHHT-------SCCCCHHHHH----HHHHHHH---HTTTSS------CHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc-------CCCCCHHHHh----HHHHHHH---HHHCcC------Cccccc--chHHHHHHHH
Confidence 9999999999988887422 3456787665 8999995 444433 222232 3566666556
Q ss_pred Hhhccccc-------cccc--cccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhh-CCCchHHHHHHHHHH
Q 002190 519 INVTDSGL-------HSQR--YCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELL-GLHDHLLLLNVIVGK 588 (955)
Q Consensus 519 ~~~~~~~~-------~~~~--~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~-g~~d~~~~~~~~l~k 588 (955)
+++.+..- -+++ +..+.|||+..+++.||+. .+ .+++++|++.+ |+++ +++++|.+.
T Consensus 527 l~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~----vl-------~~L~~~m~~~~~~vq~--aA~~af~~i 593 (1073)
T 3gjx_A 527 LGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT----VV-------NKLFEFMHETHDGVQD--MACDTFIKI 593 (1073)
T ss_dssp HHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH----HH-------HHHHHHTTCCSTTHHH--HHHHHHHHH
T ss_pred hcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH----HH-------HHHHHHHhcCCHHHHH--HHHHHHHHH
Confidence 66553221 1222 4566788888888888873 43 66777777654 5566 677777653
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHHhccccchhh-hc------cchhHHHHHHhcccCCCCCcccccccchhhHHHHHHH
Q 002190 589 IATNLKCYTESQEVIDHTLSLFLELASGYMTGKL-LL------KLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIG 661 (955)
Q Consensus 589 i~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~-l~------~~~~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~ 661 (955)
... |+. +. ..|.+..+++..... +.-++ .+....+|+++|
T Consensus 594 ~~~----------------------------C~~~lv~~~~~e~~p~i~~il~~~~~~-~~~l~----~~~~~~lyeav~ 640 (1073)
T 3gjx_A 594 AQK----------------------------CRRHFVQVQVGEVMPFIDEILNNINTI-ICDLQ----PQQVHTFYEAVG 640 (1073)
T ss_dssp HHH----------------------------TGGGGTSCCTTCSSCHHHHHHTSHHHH-HTTCC----HHHHHHHHHHHH
T ss_pred HHH----------------------------HHHHHhhccccccchHHHHHHHHHHHH-HHhcC----HHHHHHHHHHHH
Confidence 322 221 11 245667777655431 12232 556689999999
Q ss_pred HHHhcCC----ChHHHHHhhHHHHHHHHHhcc---CCCccCCcHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhc
Q 002190 662 WLIFMEE----SPVKFKSSMDPLLQVFISLES---TPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPA 734 (955)
Q Consensus 662 ~i~~~~~----~~~~~~~~l~p~~~~~~~i~~---~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~ 734 (955)
.++...+ +.++++.+|.|+.++|+++.. ++.+.+.|++..+++..+++++.++|.+++. .|..++.-++|+
T Consensus 641 ~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~--~f~~~~~~i~~~ 718 (1073)
T 3gjx_A 641 YMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGH--PFVIQLGRIYLD 718 (1073)
T ss_dssp HHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHH
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcch--hHHHHHHHHHHH
Confidence 9986543 467899999999999999973 2346778888889999999999999999987 466666667776
Q ss_pred chHHH---HHhhhhh--------cCCCc------chHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHh
Q 002190 735 HMPLL---LKGISHW--------TDTPE------VTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSR 797 (955)
Q Consensus 735 ~~~~~---~~l~~~y--------~~~~~------v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~ 797 (955)
+.+.+ .+.+... ...|. +-..||||+..++.+. .... .....++-..+..++.+|.++
T Consensus 719 ~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~-~~~~----~v~~~~i~pl~~~vl~dY~~~ 793 (1073)
T 3gjx_A 719 MLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS-NDPQ----MVAENFVPPLLDAVLIDYQRN 793 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTC-SCHH----HHHHHTSHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcC-CCHH----HHHHHhHHHHHHHHHHHHhcC
Confidence 54332 2222110 01222 3458999999999853 1111 112335777888899999874
Q ss_pred hhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHH
Q 002190 798 VLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFL 877 (955)
Q Consensus 798 ~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll 877 (955)
.|..+ +.+++..+..+++-+.+.+. +.++.+++.+|++|+.|..+||.+||+||..||+|+
T Consensus 794 ---~p~~r--~~evL~l~s~iv~k~~~~~~--------------~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll 854 (1073)
T 3gjx_A 794 ---VPAAR--EPEVLSTMAIIVNKLGGHIT--------------AEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLL 854 (1073)
T ss_dssp ---CGGGC--CTHHHHHHHHHHHHHGGGTG--------------GGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHH
T ss_pred ---Ccccc--cHHHHHHHHHHHHHHHhhcc--------------hhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHH
Confidence 55555 66777754444444444333 478999999999999999999999999999999999
Q ss_pred HHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHHhhhhcccccccccccc
Q 002190 878 EVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQVYAQKWHQVICLCP 931 (955)
Q Consensus 878 ~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~~ 931 (955)
..+++.||..+.++|++.|+.+++|+.||+||.+++|++.|+.++.++++|+..
T Consensus 855 ~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 855 QAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999875
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1e-52 Score=525.25 Aligned_cols=803 Identities=15% Similarity=0.221 Sum_probs=567.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
|++.||++++.+|+|++ ++|++|+++|.+|+++|++|..|..||+++++++++|||+++|++.|++ +.+|+++|.+|
T Consensus 14 dv~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp CHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 68999999999999875 5899999999999999999999999999999999999999999999996 89999999999
Q ss_pred HHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhc--
Q 002190 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE-- 153 (955)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~e-- 153 (955)
|+++++++.+.+.+. ++++++|++.+++.|+|++||+.|+ ++++++.+.++ .++.++..+|.+|..+.+|
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp--~~l~dL~~~l~-~~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 999999998753332 5899999999999999999999998 89999998885 4556677778888777777
Q ss_pred -ccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCcccccc
Q 002190 154 -MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (955)
Q Consensus 154 -f~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~ 232 (955)
++..+ ++..+.++.+..++.. ++.|++++..+|+.... ..+...+|+++..+++|.+.+..
T Consensus 170 ~~~~~~--l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~~~---~~l~~~~L~~l~s~l~WI~i~~i------------ 231 (1023)
T 4hat_C 170 DFSAEQ--MTQAKALHLKNSMSKE-FEQIFKLCFQVLEQGAS---SSLIVATLESLLRYLHWIPYRYI------------ 231 (1023)
T ss_dssp TSCTTT--SCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTTSCTHHH------------
T ss_pred Hhhhcc--chHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhCCHHHh------------
Confidence 44344 3445555666667776 89999999999976322 35788999999999999886543
Q ss_pred CCCcccccccCcchHHHHH-HHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHH----HHHHHH-HHHhhcCc-
Q 002190 233 IPSAWRPVLEDPSTLQIFF-DYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLA----HLMTGT-KEILQTGQ- 305 (955)
Q Consensus 233 ~p~~W~~~l~~~~~l~~lf-~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~----~~l~~~-~~il~~~~- 305 (955)
.++++++++| ... ..+.++..|++||.++++.+.+ ++.+...+.+. .++..+ ..+++...
T Consensus 232 ---------~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~--~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~ 298 (1023)
T 4hat_C 232 ---------YETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIATSVMPVTAD 298 (1023)
T ss_dssp ---------HSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCC--SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred ---------cchhHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3456999999 543 5778999999999999986521 11112223333 333333 22333211
Q ss_pred -------C-CCCcchHHHHHHHHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhcc-ccCcHHHHHHHHHHhhcC
Q 002190 306 -------G-LADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQW-ASSSVYYLLGLWSRLVTS 376 (955)
Q Consensus 306 -------~-l~~~e~~~~~~~ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~-~~~~~~~lL~~W~~l~~~ 376 (955)
+ -.|++..+.+|+++..+..+|. ..+.+.+.+.+.+..+......+ ..+ +.+.+.++++||..++.+
T Consensus 299 l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~-~li~~~~~~~~~l~~~l~~Ll~~---~~~~d~ei~~~tl~FW~~L~~~ 374 (1023)
T 4hat_C 299 LKATYANANGNDQSFLQDLAMFLTTYLARNR-ALLESDESLRELLLNAHQYLIQL---SKIEERELFKTTLDYWHNLVAD 374 (1023)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG-GGGTSCGGGHHHHHHHHHHHHHH---TTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHH-HHHhCCcchhHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHHHHH
Confidence 1 1234556678999988888874 34444455555554433443433 223 346779999999999986
Q ss_pred cccccCCCcchhhhhHHHHHHHHHhcccccccccc--CCCCCC---C---CCCCHHHHHHHHhhhhhhhhcchhhHHHHH
Q 002190 377 VPYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGF--PDDLSD---N---PLDNVELLQDQLDCFPYLCRFQYENSGLYI 448 (955)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~~~--~ee~~e---~---~~~d~~~~~~~le~i~~l~r~~~~~~~~~l 448 (955)
+ |.+.........+..++....+ .||..|++.. .+|++| + +.|+.+.++..++++.+++++...++.+++
T Consensus 375 l-~~e~~~~~~~~~~~~~L~~vli-~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~ 452 (1023)
T 4hat_C 375 L-FYEPLKKHIYEEICSQLRLVII-ENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIM 452 (1023)
T ss_dssp H-TTSTTTGGGGHHHHHHHHHHHH-HSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred H-HhchHHHHHHHHHHHHHHHHHH-HhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 5 4321122344555668888866 7788887542 233222 1 224456788889999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHHHhhccccccc
Q 002190 449 INTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHS 528 (955)
Q Consensus 449 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~ 528 (955)
.+.+.+.++ .++++|..++ ..+|+++ ++.+|. .++.+. ..+...+-.++++.+.....
T Consensus 453 ~~~l~~~l~-------~~~~~W~~~E----A~~~a~g---aIa~~~------~~~~e~--~~l~~vi~~Ll~l~~~~~~~ 510 (1023)
T 4hat_C 453 ISKLARQID-------GSEWSWHNIN----TLSWAIG---SISGTM------SEDTEK--RFVVTVIKDLLDLCVKKRGK 510 (1023)
T ss_dssp HHHHHHHHS-------STTCCHHHHH----HHHHHHH---HTTTSS------CHHHHH--HHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHhc-------CCCCCHHHHH----HHHHHHH---HHHcCC------CchhHH--HHHHHHHHHHHHhhhccccC
Confidence 988876422 2335676544 7888884 776655 222121 34444554555544321110
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 002190 529 QRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLS 608 (955)
Q Consensus 529 ~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~ 608 (955)
...+++..+..|-+.||.. |+..+ ...+...+++++.-+. ...+.+...|+.
T Consensus 511 -----d~k~~v~~t~~~~lGry~~-wl~~~--------------------~~~L~~vl~~L~~~l~--~~~~~v~~~A~~ 562 (1023)
T 4hat_C 511 -----DNKAVVASDIMYVVGQYPR-FLKAH--------------------WNFLRTVILKLFEFMH--ETHEGVQDMACD 562 (1023)
T ss_dssp -----HHHHHHHHHHHHHHHTCHH-HHHHC--------------------HHHHHHHHHHHHHHTT--CSCHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHHHH-HHhcc--------------------HHHHHHHHHHHHHHhh--cCCHHHHHHHHH
Confidence 0125566678888888776 43111 1223333444333331 123567777788
Q ss_pred HHHHHhccccchhh-hcc------chhHHHHHHhcccCCCCCcccccccchhhHHHHHHHHHHhcCC----ChHHHHHhh
Q 002190 609 LFLELASGYMTGKL-LLK------LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSM 677 (955)
Q Consensus 609 Ll~~l~~~~~~~~~-l~~------~~~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~i~~~~~----~~~~~~~~l 677 (955)
-|..++++ |+. +.. .|.+..+++..... ++-++ .+.+..+|+++|.++...+ +.++++.+|
T Consensus 563 al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~-~~~l~----~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~ 634 (1023)
T 4hat_C 563 TFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKT-TADLQ----PQQVHTFYKACGIIISEERSVAERNRLLSDLM 634 (1023)
T ss_dssp HHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHH-HTTSC----HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHH-HHhCC----HHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 88888763 432 322 56777777665431 11122 5577899999999985432 466899999
Q ss_pred HHHHHHHHHhc----cCCCccCCcHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhcchHHH---HHhhhhh----
Q 002190 678 DPLLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLL---LKGISHW---- 746 (955)
Q Consensus 678 ~p~~~~~~~i~----~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~---~~l~~~y---- 746 (955)
.|+...|+++. .+| ..+.+++..+.+..+++++..+|.+++. .|...++-++|.+.+++ .+.+...
T Consensus 635 ~~~~~~~~~l~~~~~~~~-~~~~d~~~~~~l~~il~~~~~v~~~lg~--~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~ 711 (1023)
T 4hat_C 635 QLPNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLGHIYYNMLQLYRAVSSMISAQVAAE 711 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCT-TGGGCHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcCc-hhhcCHHHHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999996 344 6778888999999999999999999987 35556665666544222 2222110
Q ss_pred ----cCCC------cchHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHH
Q 002190 747 ----TDTP------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMW 816 (955)
Q Consensus 747 ----~~~~------~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~ 816 (955)
...| .+-..||||+..++.+. .... .....++-..+..++.+|.++ .|..+ +.+.+.
T Consensus 712 g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~-~~~~----~~~~~~~~~l~~~vl~dY~~~---~~~~r--~~~vL~--- 778 (1023)
T 4hat_C 712 GLIATKTPKVRGLRTIKKEILKLVETYISKA-RNLD----DVVKVLVEPLLNAVLEDYMNN---VPDAR--DAEVLN--- 778 (1023)
T ss_dssp CGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC-SCHH----HHHHHTHHHHHHHHHHHHHHS---CGGGC--CHHHHH---
T ss_pred CchhhccHHHHHHHHHHHHHHHHHHHHHhcC-CCHH----HHHHHhHHHHHHHHHHHHHhC---Chhhc--cHHHHH---
Confidence 1122 23347899999999843 1010 111335777788899999875 44445 566666
Q ss_pred HHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHH
Q 002190 817 ICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTF 896 (955)
Q Consensus 817 ~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f 896 (955)
++.++.+.+++.+ .+.++.+++.+|++|+.|..+|+.+||++|..||+|+..+++.||..+.++|++.|
T Consensus 779 -l~s~iv~~~~~~~----------~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~ 847 (1023)
T 4hat_C 779 -CMTTVVEKVGHMI----------PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAF 847 (1023)
T ss_dssp -HHHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHH
T ss_pred -HHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHH
Confidence 5555555555332 24689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccHHHHhhhhcccccccccccc
Q 002190 897 MHIVGSLESGLKGLDTNISSQVYAQKWHQVICLCP 931 (955)
Q Consensus 897 ~~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~~ 931 (955)
+.+++|+.||+||.+++|++.|+.++.++++|+..
T Consensus 848 ~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 848 KLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988763
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.5e-37 Score=395.99 Aligned_cols=779 Identities=13% Similarity=0.119 Sum_probs=512.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
++++++++++.+|.+++++.|++|+++|.+|+++|++|..|..||+++++++++|+|+.+|++.|++ +.+|+++|..|
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH
Confidence 6899999999988888899999999999999999999999999999999999999999999999987 88999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc-----ccchhHHHHHHHHHHHHhccc
Q 002190 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ-----ATSDHYAIGLKILNQLVSEMN 155 (955)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~-----~~~~~~~~gl~lL~~lv~ef~ 155 (955)
|+++++++.+. ++.+++|++|++.+++.|+|++||+.|+ ++++++.+.+++ .++.+...++.+|+.+.+|..
T Consensus 102 r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 102 KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 99999999986 3457999999999999999999999998 899999888753 144578999999999998875
Q ss_pred CCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCC
Q 002190 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPS 235 (955)
Q Consensus 156 ~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~ 235 (955)
..+. +..++...+..++. .++.++.++..++.+... +..+...+++++ .+|...+...+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~~~--~~~~~~~~l~~l---~~wi~~~~~~~------------- 237 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQPSS--PSCVRQKVLKCF---SSWVQLEVPLQ------------- 237 (963)
T ss_dssp TCCC-----------CCSGG-GHHHHHHHHHHHHSCTTC--CHHHHHHHHHHH---HHHHTSSCCGG-------------
T ss_pred cccC--cHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCC--chHHHHHHHHHH---HHHHcCCCCcc-------------
Confidence 5443 22222223334544 488888888888765322 123555555433 25877544211
Q ss_pred cccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhc---CcCCCCcch
Q 002190 236 AWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQT---GQGLADHDN 312 (955)
Q Consensus 236 ~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~---~~~l~~~e~ 312 (955)
.++.+++.+|+.. ..++++..+++|+.++.+.+.+ ..+..++..++.++...++. .....|.+.
T Consensus 238 ------~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 304 (963)
T 2x19_B 238 ------DCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPDA-----QRYVNTLLKLIPLVLGLQEQLRQAVQNGDMET 304 (963)
T ss_dssp ------GTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTG-----GGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred ------cchHHHHHHHHHh--CCchHHHHHHHHHHHHHccccc-----ccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHH
Confidence 1256888888765 5788999999999999985421 12334555555544432210 111145577
Q ss_pred HHHHHHHHHHhhhhcchhhhhc----ccChHHHHHHHHHHHHHHhhhh---ccccCcHHHHHHHHHHhhcCcccccCC-C
Q 002190 313 YHEYCRLLGRFRVNYQLSELVN----VEGYSDWIQLVAEFTLKSLQSW---QWASSSVYYLLGLWSRLVTSVPYLKGD-A 384 (955)
Q Consensus 313 ~~~~~~ll~rl~~~~~~~~l~~----~~~~~~fl~~l~~~t~~~l~~~---~~~~~~~~~lL~~W~~l~~~~~~~~~~-~ 384 (955)
+..+|+++.++.+.++ ..+.. .+.+..+++.+. .+.+.+ ..+++....++++|..++......... .
T Consensus 305 ~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll----~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 305 SHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIM----FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHH----HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhH-HHHHcCccchHHHHHHHHHHH----HHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 7889999999998874 33331 233344444443 333332 233445667999999998743211000 0
Q ss_pred c---chhhhhHHHHHHHHHhccccccccccCCCCCCCCCCCHHH-HHHHHhhhhhhhhcchhhHHHHHHHhHHHHHHHHH
Q 002190 385 P---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVEL-LQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYT 460 (955)
Q Consensus 385 ~---~~l~~~~~~I~~~yi~~~l~~~~~~~~ee~~e~~~~d~~~-~~~~le~i~~l~r~~~~~~~~~l~~~l~~~~~~~~ 460 (955)
+ ..+..+..++....+ .+|..++....+++++++.++... .....+.+..+++..++++.+.+.+.+.+.++.|
T Consensus 380 ~~~~~~~~~~l~~l~~~ll-~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~- 457 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVDVLL-HKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS- 457 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc-
Confidence 1 223445566666655 455443211000111111111111 2345567777888888888888888887765433
Q ss_pred HHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHHH-hhccccccccccccchhhHH
Q 002190 461 ERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLI-NVTDSGLHSQRYCELSKQRL 539 (955)
Q Consensus 461 ~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~-~~~~~~~~~~~~~~~s~~~l 539 (955)
....+|...+ -..|++ |++..|-... + +..+. .++..+ ++.+ ..|++
T Consensus 458 ----~~~~~w~~~e----aal~al---~~i~~~~~~~-------~--~~~l~-~l~~~l~~l~~-----------~~~~v 505 (963)
T 2x19_B 458 ----EEPYSWQHTE----ALLYGF---QSIAETIDVN-------Y--SDVVP-GLIGLIPRISI-----------SNVQL 505 (963)
T ss_dssp ----CCSCCHHHHH----HHHHHH---HHHTTSCCSS-------C--CSHHH-HHHHHGGGSCC-----------CSHHH
T ss_pred ----CCCCchHHHH----HHHHHH---HHHHhhcCch-------h--hHHHH-HHHHHHHhCCC-----------CcHHH
Confidence 0122443222 344444 4555443111 1 12233 233322 2221 13679
Q ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHhccccc
Q 002190 540 DRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMT 619 (955)
Q Consensus 540 ~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~ 619 (955)
..+.+|++.+|++ ++.++ ...+..+++++...|.. +++...|+..|..++..
T Consensus 506 r~~~~~~l~~~~~-~l~~~--------------------~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~--- 557 (963)
T 2x19_B 506 ADTVMFTIGALSE-WLADH--------------------PVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE--- 557 (963)
T ss_dssp HHHHHHHHHHTHH-HHHHC--------------------HHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHH-HHHhC--------------------HHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH---
Confidence 9999999999886 43221 12333445555555532 67888899999999863
Q ss_pred hhhhccchhHHHHHHhcccCCCCCccccc-ccchhhHHHHHHHHHHhcC---CChHHHHHhhHHHHHHHHHhccCCCccC
Q 002190 620 GKLLLKLDTIKFIVANHTREHFPFLEEYR-CSRSRTTFYYTIGWLIFME---ESPVKFKSSMDPLLQVFISLESTPDSMF 695 (955)
Q Consensus 620 ~~~l~~~~~~~~ll~~~~~~~~~~l~~~~-~~k~r~~~y~al~~i~~~~---~~~~~~~~~l~p~~~~~~~i~~~~~~~~ 695 (955)
++..+ .|.+..+++.... .++.+. ..+.|..+|+++|.++..- ....|+..+|.|+...|.++..++
T Consensus 558 ~~~~l-~p~~~~il~~l~~----~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~---- 628 (963)
T 2x19_B 558 CKYDL-PPYAANIVAVSQD----VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI---- 628 (963)
T ss_dssp TGGGC-TTTHHHHHHHHHH----HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC----
T ss_pred HHHHH-HhhHHHHHHHHHH----HhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 33211 2666666654321 111111 1457889999999998532 345689999999999999987543
Q ss_pred CcHHHHHHHHHHHHHHhhhhhhhccc--------------------hhHHHHHHHHhhcchHHHHHhhhhhcCCCcchHH
Q 002190 696 RTDAVKCALIGLMRDLRGIAMATNSR--------------------RTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTP 755 (955)
Q Consensus 696 ~~~~~~~~i~~~l~~l~Gi~~a~~~~--------------------~~~~~~f~~i~~~~~~~~~~l~~~y~~~~~v~~~ 755 (955)
.+++.+..+...++++.++++++... ..+.. ++...++.+..+++.|.+++.+...
T Consensus 629 ~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~v~e~ 704 (963)
T 2x19_B 629 PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV----VLQQVFQLIQKVLSKWLNDAQVVEA 704 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH----HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH----HHHHHHHHHHHHHHhccCchHHHHH
Confidence 37788888899999999999998742 11222 3333456667788888888999999
Q ss_pred HHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCcccccc
Q 002190 756 LLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGV 835 (955)
Q Consensus 756 iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~vnfg~ 835 (955)
+.+++...+..-+. .. +-++.+.+..++..|... + ... ++.+++.++. .||.
T Consensus 705 ~~~~l~~~~~~~~~-------~~-~~~l~~~~~~l~~~~~~~----~-----~~~-------~l~l~~~li~----~f~~ 756 (963)
T 2x19_B 705 VCAIFEKSVKTLLD-------DF-APMVPQLCEMLGRMYSTI----P-----QAS-------ALDLTRQLVH----IFAH 756 (963)
T ss_dssp HHHHHHHHHHHSSS-------TT-GGGHHHHHHHHHHHHHHS----C-----CHH-------HHHHHHHHHH----HHTT
T ss_pred HHHHHHHHHHhhcc-------cc-cccHHHHHHHHHHHHHcC----C-----ccH-------HHHHHHHHHH----HhCC
Confidence 99999998764211 11 224666666777777541 1 111 3344444444 1232
Q ss_pred ccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhccccHHHH
Q 002190 836 FELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNIS 915 (955)
Q Consensus 836 ~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~~~i~ 915 (955)
...++ +.+.+++..+++.++.+..+++.+||+++..||.++..+.+.||..+.. ++..|..+++++.+|+++.+++++
T Consensus 757 ~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~ 834 (963)
T 2x19_B 757 EPAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTV 834 (963)
T ss_dssp CTTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHH
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHH
Confidence 22122 3577788888888888877888899999999999999999999999875 444499999999999999999999
Q ss_pred hhhhcccccccccccce
Q 002190 916 SQVYAQKWHQVICLCPF 932 (955)
Q Consensus 916 ~~~l~~~~~~l~~l~~~ 932 (955)
+.||+. +.++.++
T Consensus 835 ~~~l~~----l~~l~~~ 847 (963)
T 2x19_B 835 KASCGF----FTELLPR 847 (963)
T ss_dssp HHHHHH----HHHHGGG
T ss_pred HHHHHH----HHHHHhc
Confidence 999999 5555544
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.9e-36 Score=387.30 Aligned_cols=803 Identities=15% Similarity=0.216 Sum_probs=518.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
++++++++++.+|+|. +++|++||++|.+|+++|++|..|..||+++++++++|+|+.+|++.|++ ..+|+++|..|
T Consensus 14 ~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp CHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred cHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH
Confidence 6899999999999876 46899999999999999999999999999999999999999999999986 88999999999
Q ss_pred HHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHH---Hh
Q 002190 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQL---VS 152 (955)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~l---v~ 152 (955)
|+++++++.+...+. +++|++|++.+++.|+|++||+.|| ++++++.+.++ +++.++..++.+|..+ +.
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHH
Confidence 999999998763333 3799999999999999999999998 89999988885 4444444455555554 44
Q ss_pred cccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCcccccc
Q 002190 153 EMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (955)
Q Consensus 153 ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~ 232 (955)
+++..+.+.....|.|. .|+++ ++.||.++...++...+ ..+...+|+++..+++|...+..
T Consensus 170 ~~~~~~~~~~r~~~lk~--~l~~~-~~~i~~~~~~~l~~~~~---~~~~~~aL~~l~~~l~wi~~~~~------------ 231 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLKN--SMSKE-FEQIFKLCFQVLEQGSS---SSLIVATLESLLRYLHWIPYRYI------------ 231 (1049)
T ss_dssp TSCTTTSCHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTTTSCTHHH------------
T ss_pred HhcchhhhhHHHHHHHH--HHHHH-HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhCCHHHH------------
Confidence 55455555444444443 47664 99999999999976422 35788899999999999875432
Q ss_pred CCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChH-----HHHHHHHHHHHHHHH-HhhcCc-
Q 002190 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDA-----ARSKFLAHLMTGTKE-ILQTGQ- 305 (955)
Q Consensus 233 ~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~-----~~~~~l~~~l~~~~~-il~~~~- 305 (955)
.++.+++.+++.+. .+++++..+++||.++++.+ .++.. .....+..++..+.. +++...
T Consensus 232 ---------~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~---~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~ 298 (1049)
T 3m1i_C 232 ---------YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLK---IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTAD 298 (1049)
T ss_dssp ---------HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC---CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred ---------hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCC---CCcchhhHHHHHHHHHHHHHHHHHHhhCCCccc
Confidence 23568898886654 47889999999999999874 12211 111222333333322 332211
Q ss_pred --------CCCCcchHHHHHHHHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCc
Q 002190 306 --------GLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 377 (955)
Q Consensus 306 --------~l~~~e~~~~~~~ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~ 377 (955)
+-.+.+.+..+|+++..+...+ ...+...+.+.+++..+..++..+.... +++....+++||..+...+
T Consensus 299 l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 299 LKATYANANGNDQSFLQDLAMFLTTYLARN-RALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHHHHHHHH-HHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHH-HHHHcCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHH
Confidence 1123344567889888887775 3333332234555666666666544322 2344667999999998742
Q ss_pred ccccCCCcchhhhhHHHHHHHHHhcccccccccc-CC-CCCCC---CCCCHH---HHHHHHhhhhhhhhcchhhHHHHHH
Q 002190 378 PYLKGDAPSLLDEFVPKITEGFITSRFNSVQAGF-PD-DLSDN---PLDNVE---LLQDQLDCFPYLCRFQYENSGLYII 449 (955)
Q Consensus 378 ~~~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~~~-~e-e~~e~---~~~d~~---~~~~~le~i~~l~r~~~~~~~~~l~ 449 (955)
+...........+..++....+ .+|..++... .+ |++|. ..+|.+ .++...+++..++++.+.++.+.+.
T Consensus 376 -~~~~~~~~~~~~~l~~Lv~~ll-~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~ 453 (1049)
T 3m1i_C 376 -FYEPLKKHIYEEICSQLRLVII-ENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMI 453 (1049)
T ss_dssp -HHSTTCGGGGHHHHHHHHHHHH-HTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -HhchhHHHHHHHHHHHHHHHHH-HhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1011122345566777777755 5676654221 11 21211 223333 2445667788888888888888888
Q ss_pred HhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHHHhhcccccccc
Q 002190 450 NTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQ 529 (955)
Q Consensus 450 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~~ 529 (955)
+.+.+.++ .+..+|...+ ...|++ |++.++. .+..+. ..+...+-.+.++.+....
T Consensus 454 ~~l~~~l~-------~~~~~W~~~e----aal~al---gsia~~~------~~~~e~--~~l~~v~~~l~~l~~~~~~-- 509 (1049)
T 3m1i_C 454 SKLARQID-------GSEWSWHNIN----TLSWAI---GSISGTM------SEDTEK--RFVVTVIKDLLDLTVKKRG-- 509 (1049)
T ss_dssp HHHHHHHT-------SSSCCHHHHH----HHHHHH---HHTTTSS------CHHHHH--HHHHHHHHHHHHHTTSSCS--
T ss_pred HHHHHHhC-------CCCCCHHHHH----HHHHHH---HHHhccc------CchhhH--HHHHHHHHHHHHHHhhhcc--
Confidence 77776422 2234564433 556665 3554332 111111 1133333333333221111
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Q 002190 530 RYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSL 609 (955)
Q Consensus 530 ~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~L 609 (955)
....|++..+..|.+.+|.. ++..+ ...+..+++++...+. ..++++...|...
T Consensus 510 ---~~~~~~v~~~~~~~lgry~~-~~~~~--------------------~~~l~~vl~~ll~~l~--~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 510 ---KDNKAVVASDIMYVVGQYPR-FLKAH--------------------WNFLRTVILKLFEFMH--ETHEGVQDMACDT 563 (1049)
T ss_dssp ---HHHHHHHHHHHHHHHHHCHH-HHHHC--------------------HHHHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHHHHH-HHHhH--------------------HHHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 01135555568888888775 43211 1233334444444442 2357888899999
Q ss_pred HHHHhccccchhh-hcc------chhHHHHHHhcccCCCCCcccccccchhhHHHHHHHHHHhcCC----ChHHHHHhhH
Q 002190 610 FLELASGYMTGKL-LLK------LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMD 678 (955)
Q Consensus 610 l~~l~~~~~~~~~-l~~------~~~~~~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~i~~~~~----~~~~~~~~l~ 678 (955)
|..++.. |+. +.. .|.+..+++..... +.-++ .+.+..+|+++|.++...+ ...++..+|.
T Consensus 564 l~~l~~~---~~~~l~~~~~~~~~p~~~~il~~l~~~-~~~~~----~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~ 635 (1049)
T 3m1i_C 564 FIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKT-TADLQ----PQQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1049)
T ss_dssp HHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHH-HTTSC----HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred HHHHHHH---HHHHhhcccCCCCCcHHHHHHHHHHHH-HHhCC----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999873 332 221 27777777665321 11121 3355799999999985432 3568999999
Q ss_pred HHHHHHHHhcc----CCCccCCcHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhcchHHHHH---hhhhh---c-
Q 002190 679 PLLQVFISLES----TPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLK---GISHW---T- 747 (955)
Q Consensus 679 p~~~~~~~i~~----~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~~~---l~~~y---~- 747 (955)
|+.++|.++.. ++ ....+++....+..+++++..++.+.+. .+...++.+++....++.. .++.. .
T Consensus 636 ~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~l~~~~~~~~~l~~--~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g 712 (1049)
T 3m1i_C 636 LPNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEG 712 (1049)
T ss_dssp HHHHHHHHHHHHHHHCG-GGGGSHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhch-hhhcCHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999998852 22 3334667777888999999999999976 3444444444433222211 11100 0
Q ss_pred ----CCC------cchHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHH
Q 002190 748 ----DTP------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWI 817 (955)
Q Consensus 748 ----~~~------~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~ 817 (955)
..| .+...+++++..+..+- +.. . ...+-++-..+..++..|.+. .+..+ +.+.+.
T Consensus 713 ~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~--~~l--~-~~~~~~~~~~l~~ll~~~~~~---~~~~~--~~~~l~---- 778 (1049)
T 3m1i_C 713 LIATKTPKVRGLRTIKKEILKLVETYISKA--RNL--D-DVVKVLVEPLLNAVLEDYMNN---VPDAR--DAEVLN---- 778 (1049)
T ss_dssp GGGGGSHHHHHHHHHHHHHHHHHHHHHHHC--SCH--H-HHHHHTHHHHHHHHHHHHHHS---CGGGC--CTHHHH----
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhC--CCH--H-HHHHHHHHHHHHHHHHHHHhC---Ccccc--cHHHHH----
Confidence 111 24456667777766531 000 0 000112344555677777652 22222 234444
Q ss_pred HHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHH
Q 002190 818 CFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFM 897 (955)
Q Consensus 818 ~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~ 897 (955)
++..+...+++.+ ++.+..++..+++.++.|..+++.++|+++..||+|+..+.+.||..+..+|++.|.
T Consensus 779 l~~~ii~~~~~~~----------~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 848 (1049)
T 3m1i_C 779 CMTTVVEKVGHMI----------PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFK 848 (1049)
T ss_dssp HHHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHH
Confidence 3444444444332 245788889999988877767888999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHhhhhccccccccccc
Q 002190 898 HIVGSLESGLKGLDTNISSQVYAQKWHQVICLC 930 (955)
Q Consensus 898 ~~~~sl~~gl~~~~~~i~~~~l~~~~~~l~~l~ 930 (955)
.+++++.||++|.++++.+.+++.+.+++.+..
T Consensus 849 ~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 849 LFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999777776653
No 5
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2.8e-29 Score=313.98 Aligned_cols=810 Identities=11% Similarity=0.092 Sum_probs=494.2
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhccCcccHHHHHHHHhcCC--ChhHHHHHHHHHHHHHhhcCCCHH----
Q 002190 3 SLAQLEALCERLYNSQ-DSVERAHAENTLKCFSVNTDYISQCQFILDNAL--TPYALMLASSSLLKQVTEHSLALQ---- 75 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~-~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~--~~~~~f~a~~~L~~~i~~~~l~~~---- 75 (955)
+++++++|++..|+|. +++.|++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|+ .+|++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~--~l~~e~~~~ 81 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR--EWNNESNLL 81 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH--HCCTTTSHH
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH--hCChhhhHH
Confidence 5789999997777764 789999999999999999999999999999875 89999999999999999 58999
Q ss_pred HHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccc-hhHHHHHHHHHHHHhc
Q 002190 76 LRLDIRNYLINYLAKRG-PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATS-DHYAIGLKILNQLVSE 153 (955)
Q Consensus 76 ~k~~ir~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~-~~~~~gl~lL~~lv~e 153 (955)
++..||+++++++.+.. .+.+++|++|++.+++.++|+.||+.|+ +++.++.+.++.++. ......|++|..+.+|
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc--hHHHHHHHHhcCCChhHHHHHHHHHHHHhHHH
Confidence 99999999999998742 2467999999999999999999999998 899999888864444 4567788888866677
Q ss_pred ccCCCCCCchHHhHhh---hhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCcccc
Q 002190 154 MNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (955)
Q Consensus 154 f~~~~~~~~~~~h~k~---~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~ 230 (955)
........+.+.+.|. +..+++.+++.|+..+..+|.+......+.+...+|+++..+++|.+.+.
T Consensus 160 v~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~----------- 228 (980)
T 3ibv_A 160 IADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL----------- 228 (980)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH-----------
T ss_pred HHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHh-----------
Confidence 6543333444333333 55677778999999999999886432223688899999999999987654
Q ss_pred ccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcC-CCC
Q 002190 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQG-LAD 309 (955)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~-l~~ 309 (955)
+.++++++.+|+.. ..++++..|.+||.++.+.+.. ++++...+..+ ++.+++..-.. -.|
T Consensus 229 ----------i~~~~ll~~l~~~L--~~~~~r~~A~ecL~ei~~k~~~----~~~k~~li~~l--~L~~~~~~l~~~~~D 290 (980)
T 3ibv_A 229 ----------IVNEPCMNLLYSFL--QIEELRCAACETMTEIVNKKMK----PLEKLNLLNIL--NLNLFFSKSQEQSTD 290 (980)
T ss_dssp ----------HHCHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHH--HHHHHHCC-----CC
T ss_pred ----------hhcchHHHHHHHHc--CChHHHHHHHHHHHHHHHcCCC----hhhHHHHHHHH--hHHHHHHHHhccccc
Confidence 24467999999765 4578999999999999987632 45666666553 44566654321 245
Q ss_pred cchHHHHHHHHHHhhhhcchhhhhcccC---------hHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCcccc
Q 002190 310 HDNYHEYCRLLGRFRVNYQLSELVNVEG---------YSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYL 380 (955)
Q Consensus 310 ~e~~~~~~~ll~rl~~~~~~~~l~~~~~---------~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~~~~ 380 (955)
.|....+|+++..+...+-.. ...+. -..-+..+..+...++... +.+.....++||..++....+.
T Consensus 291 ~d~~~~la~L~~~~ge~l~~~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~ 366 (980)
T 3ibv_A 291 PNFDEHVAKLINAQGVELVAI--KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKE 366 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhc
Confidence 566666888887776554211 22110 0012222223333333332 1234445799999888643322
Q ss_pred cC--CCcchhhhhHHHHHHHHHhccccccccccCCCCCCCCCCCHHHHHHHHhhhh----hhhhcchhhHHHHHHHhHHH
Q 002190 381 KG--DAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFP----YLCRFQYENSGLYIINTMEP 454 (955)
Q Consensus 381 ~~--~~~~~l~~~~~~I~~~yi~~~l~~~~~~~~ee~~e~~~~d~~~~~~~le~i~----~l~r~~~~~~~~~l~~~l~~ 454 (955)
.. ..+.....+.+++....+ .||.-++.. +.++|++.+|++.+.+.+..++ .++.+.++.+.+.+.+.+..
T Consensus 367 ~~~~~~~~~~~~~l~~Ll~~li-~k~~yp~d~--~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~ 443 (980)
T 3ibv_A 367 SSSKELSASLKEFLKSLLEAII-KKMKYDESQ--EWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITS 443 (980)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHH-HTTSCCTTC--CCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHH-HHccCCCcc--ccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 11 112344556677777744 667755321 1111223355555554444433 33455666666655555555
Q ss_pred HHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCC-CccccccchHHHHHHHHHHhhcccccccccccc
Q 002190 455 ILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCS-LESQEVLDAELSARVLQLINVTDSGLHSQRYCE 533 (955)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~-~~~~~~~d~~L~~~v~~l~~~~~~~~~~~~~~~ 533 (955)
.+++. .. +++. .-+.++.-.++..|++--|....+.. .++.+.+ +.+...+..+++- .. +.
T Consensus 444 ~l~~~---l~--~~~~----~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l-p~l~~ll~~ll~s---~i-----~~ 505 (980)
T 3ibv_A 444 SLSTA---AT--LSPE----NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP-TVLSQILALVTTS---QV-----CR 505 (980)
T ss_dssp HHHHH---TT--SCHH----HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB-CHHHHHHHHHHHS---ST-----TT
T ss_pred HHHHH---hc--ccCC----CCHHHHHHHHHHHHHHHhhccccccccCcccchh-HHHHHHHHHHHhC---CC-----CC
Confidence 44332 10 1111 11225555565555554332211110 1222222 2455555555541 11 11
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Q 002190 534 LSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLEL 613 (955)
Q Consensus 534 ~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l 613 (955)
...|++..+..|.+.||.+ ++..+. ..+...++.+.....-...++.+...|..+|..+
T Consensus 506 ~~hp~V~~~~~~~l~rys~-~~~~~~--------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYAS-FFDYES--------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGG-GGGTCC--------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHhcCc--------------------hhHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 2248899999999999887 543211 1222233333332222235567888999999999
Q ss_pred hccccchhhhccchhHHHHHHhcccCCCCCcccccc-----------------cchhhHHHHHHHHHHhcC-----CChH
Q 002190 614 ASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRC-----------------SRSRTTFYYTIGWLIFME-----ESPV 671 (955)
Q Consensus 614 ~~~~~~~~~l~~~~~~~~ll~~~~~~~~~~l~~~~~-----------------~k~r~~~y~al~~i~~~~-----~~~~ 671 (955)
++ .|+..+ .|.+..+++....- ...-..|.. ...+.-+|+++|.++... .+.+
T Consensus 565 ~~---~~~~~L-~~~~~~il~~l~~l-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~ 639 (980)
T 3ibv_A 565 VK---SIKKQV-VNYTESSLAMLGDL-LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQAL 639 (980)
T ss_dssp HH---HTTTTC-SSSHHHHHHHTTGG-GCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HH---HhhHHh-hhHHHHHHHHHHHh-hcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 87 444433 36777787766431 110000100 113567999999998432 2456
Q ss_pred HHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccch-hHHHHHHHHhhcchHHHHHhhhhhcCCC
Q 002190 672 KFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRR-TYGLLFDWLYPAHMPLLLKGISHWTDTP 750 (955)
Q Consensus 672 ~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~-~~~~~f~~i~~~~~~~~~~l~~~y~~~~ 750 (955)
+++.++.|+-..+.....+..+ -.++.. .+..++..+..++++..... ....+.+.+.+. ++.+...++.|.++.
T Consensus 640 ~l~~ll~pl~~~l~~~l~~~~~-~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~-~~~il~~l~~~~~~~ 715 (980)
T 3ibv_A 640 YCDSLINALIGKANAALSSDLS-ALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKA-SDEIFLILDRMGFNE 715 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC---CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHH-HHHHHHHHHHSCCSH
T ss_pred HHHHHHHHHHHHHHHHHhhccc-CccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHH-HHHHHHHHHhcCCcH
Confidence 8999999999999988643311 112222 56677777777787765321 111133334444 367778888888999
Q ss_pred cchHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCc
Q 002190 751 EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 830 (955)
Q Consensus 751 ~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~ 830 (955)
.|....-+++...+..-+..+ .-++-+.+..++..| ....+.+..-++..+.+..+++.
T Consensus 716 ~irea~~~~~~r~i~~lg~~~--------~p~lp~~i~~ll~~~-------------~~~e~~~fL~l~~qli~~f~~~~ 774 (980)
T 3ibv_A 716 DIRGAVRFTSGRIINVVGPDM--------LPKVPQLISILLNSI-------------DMNELVDVLSFISQLIHIYKDNM 774 (980)
T ss_dssp HHHHHHHHHHHHHTTTTHHHH--------TTTHHHHHHHHHHHC-------------CTTTHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHccHhH--------HHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888877421100 113444444444222 11223333344455555444432
Q ss_pred cccccccccCCCcHHHHHHHHHHHhcccCh---hhHHhhHHHHHHHHHHHHHHHhhhHHhhhcC--ChHHHHHHHHHHHH
Q 002190 831 VNFGVFELYGDRALSDALDIALKMTLSIPL---ADILAFRKLTKAYFAFLEVLFSSHITFILNL--NTNTFMHIVGSLES 905 (955)
Q Consensus 831 vnfg~~~~y~d~~~~~~l~~~l~l~l~ip~---~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l--~~~~f~~~~~sl~~ 905 (955)
.++ + +.-+..++..+|.+ +.-|. +.+..-+.++++||.++..+..+....++-- +...|..++.++..
T Consensus 775 ~~~--l----~~ll~~l~~~if~~-l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~ 847 (980)
T 3ibv_A 775 MEI--T----NRMLPTLLMRIFSS-LSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILH 847 (980)
T ss_dssp HHH--H----HHHHHHHHHHHHHH-TTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHH
T ss_pred HHH--H----HHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHH
Confidence 110 0 11233344444443 22232 4566677799999999999988664444322 24568888888884
Q ss_pred -hhccccHHHHhhhhcccccccccccce
Q 002190 906 -GLKGLDTNISSQVYAQKWHQVICLCPF 932 (955)
Q Consensus 906 -gl~~~~~~i~~~~l~~~~~~l~~l~~~ 932 (955)
|..+.|+...+.|+.. +.+++..
T Consensus 848 ~a~~~~d~~~~K~a~~~----l~~~v~~ 871 (980)
T 3ibv_A 848 FANLVGEPATQKSSIAL----VSKMVSL 871 (980)
T ss_dssp HC-----CHHHHHHHHH----HHHHHHC
T ss_pred HhccCCChHHHHHHHHH----HHHHHHH
Confidence 4666789999999999 5555443
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.98 E-value=4.8e-29 Score=317.50 Aligned_cols=774 Identities=12% Similarity=0.107 Sum_probs=460.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCCCHHHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~i 80 (955)
++++++++++.+|+| +++.|++|+++|.+|+++|++|..|.+||+.+++++++|+|+++|++.|++ +.+|+++|.+|
T Consensus 5 d~~~l~~~l~~~~~~-d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 5 DIARLEEAVVSFYRS-NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp ------CTHHHHHTS-TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred hHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 588999999998864 567899999999999999999999999999999999999999999999986 88999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcc------cchhHHHHHHHHHHHHhcc
Q 002190 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQA------TSDHYAIGLKILNQLVSEM 154 (955)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~------~~~~~~~gl~lL~~lv~ef 154 (955)
|+++++++.+.. +.+++|++|++.+++.|+|++|+ .|+ +++.++.+.++++ ++.++..++.+|+.+.+|.
T Consensus 84 r~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 84 KQKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-EWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-ccc--HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHH
Confidence 999999999874 44789999999999999999999 887 8999998887543 4568899999999999885
Q ss_pred cCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhh----HHHHHHHHHHHHhHhcc--ccccccCCCCCcCcc
Q 002190 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDV----ASRLQELALSLCLKCLS--FDFVGTSIDESSEEF 228 (955)
Q Consensus 155 ~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~----~~~l~~~~L~l~~~~Ls--w~f~~~~~de~~~~~ 228 (955)
.+.+ +.....+. +..++. .++.++.++..+|+....+. ...+...+++++..++. |.+.+
T Consensus 160 ~~~~-~~~~r~~~--~~~l~~-~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---------- 225 (971)
T 2x1g_F 160 QVIH-TSVKRVVL--RAEIAK-RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---------- 225 (971)
T ss_dssp HHCC-CSSCHHHH--HHHHHT-THHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----------
T ss_pred hccC-cHHHHHHH--HHHHHH-HHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----------
Confidence 4322 11111111 222333 47888888877776542210 01466677766665555 55432
Q ss_pred ccccCCCcccccccCcchHHHHHHH---Hh------------hcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHH
Q 002190 229 GTVQIPSAWRPVLEDPSTLQIFFDY---YA------------ITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL 293 (955)
Q Consensus 229 ~~~~~p~~W~~~l~~~~~l~~lf~~---~~------------~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~ 293 (955)
..+.+++.+|++ |. ...++++..+++|+.++.+... .+++...+..+
T Consensus 226 -------------~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-----~~~~~~~~~~l 287 (971)
T 2x1g_F 226 -------------GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPD-----CHNYPKTAFVL 287 (971)
T ss_dssp -------------GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSG-----GGGCHHHHHHH
T ss_pred -------------ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcc-----ccccHHHHHHH
Confidence 124578878761 11 0346789999999999998632 23456666777
Q ss_pred HHHHHHHhhc---CcCCCC---cchHHHHHHHHHHhhhhcchhhhh----c-----ccChHHHHHHHHHHHHHHhhhh--
Q 002190 294 MTGTKEILQT---GQGLAD---HDNYHEYCRLLGRFRVNYQLSELV----N-----VEGYSDWIQLVAEFTLKSLQSW-- 356 (955)
Q Consensus 294 l~~~~~il~~---~~~l~~---~e~~~~~~~ll~rl~~~~~~~~l~----~-----~~~~~~fl~~l~~~t~~~l~~~-- 356 (955)
+.++..+... ...-.| ++....+|+++.++.+.+. ..+. . .+.+..+++.+ ..+...+
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l----l~~~~~~~~ 362 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHS-TLLLSGITSADPELSILVHRIVQEI----LHCTDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTH-HHHHHHHHTCCHHHHHHHHHHHHHH----HHHHHCSSC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccccHHHHHHHHHH----HHHHcCCCC
Confidence 7666554432 111133 3777889999999998763 2222 1 11222333322 2222222
Q ss_pred -ccccCcHHHHHHHHHHhhcCccccc--CCCc---chhhhhHHHHHHHHHhccccccccccCCCCCCCCCCCHHHH----
Q 002190 357 -QWASSSVYYLLGLWSRLVTSVPYLK--GDAP---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELL---- 426 (955)
Q Consensus 357 -~~~~~~~~~lL~~W~~l~~~~~~~~--~~~~---~~l~~~~~~I~~~yi~~~l~~~~~~~~ee~~e~~~~d~~~~---- 426 (955)
..+++.....++||..+........ ...+ ..+..+..++....+ .++..|+. +|.++.+.+|++.+
T Consensus 363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~p~~---~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV-RKSEQPDE---KSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH-HHTSCCCT---TTTSCSCHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH-HHhcCCCc---ccccccCHhHHHHHHHHH
Confidence 1234567789999999876321000 0111 233445556666655 34443321 11111111112222
Q ss_pred HHHHhhhhhhhhcchhhHHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhhccccccCCCccccc
Q 002190 427 QDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEV 506 (955)
Q Consensus 427 ~~~le~i~~l~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~ 506 (955)
+..-+.+..+++..++++.+.+.+.+.+.++.|... ..+|. ...=++...|++..|-... ...
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~----~~~w~-------~~eaal~~l~~iae~~~~~-----~~~- 501 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRH----PTHWT-------KLEACIYSFQSVAEHFGGE-----EKR- 501 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHC----TTCCH-------HHHHHHHHHHHTTTC-----------C-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC----CCcHH-------HHHHHHHHHHHHHhhcChh-----hhH-
Confidence 233455666667777788888888888776655321 12443 2333444455664333111 111
Q ss_pred cchHHHHHHHHHH-hhccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHH
Q 002190 507 LDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVI 585 (955)
Q Consensus 507 ~d~~L~~~v~~l~-~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~ 585 (955)
.+- .++.++ ++... + ..|++..+.+|.+.+|+. ++.++. +-...+++.+
T Consensus 502 ---~l~-~l~~~l~~l~~~--d-------~~~~vr~~a~~~l~~~~~-~l~~~~----------------~~l~~vl~~l 551 (971)
T 2x1g_F 502 ---QIP-RLMRVLAEIPYE--K-------LNVKLLGTALETMGSYCN-WLMENP----------------AYIPPAINLL 551 (971)
T ss_dssp ---HHH-HHHHHHHHSCTT--T-------SCHHHHHHHHHHHHHTHH-HHC--------------------CHHHHHHHH
T ss_pred ---HHH-HHHHHHHhcCcc--c-------cCHHHHHHHHHHHHHHHH-HHhcCH----------------HHHHHHHHHH
Confidence 122 122222 22110 1 137799999999999886 543220 0122344444
Q ss_pred HHHHHhcccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhcccCCCCCcccc-cccchhhHHHHHHHHHH
Q 002190 586 VGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY-RCSRSRTTFYYTIGWLI 664 (955)
Q Consensus 586 l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~~~~~~~~l~~~-~~~k~r~~~y~al~~i~ 664 (955)
++.+ + +++...|...|..+++. ++..+ .|.+..+++.... .++.+ ...+.|..+|++++.++
T Consensus 552 ~~~l--~-------~~v~~~A~~al~~l~~~---~~~~l-~p~~~~ll~~l~~----~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 552 VRGL--N-------SSMSAQATLGLKELCRD---CQLQL-KPYADPLLNACHA----SLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHH--H-------SSCHHHHHHHHHHHHHH---CHHHH-HHHHHHHHHHHHH----HHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHh--C-------hHHHHHHHHHHHHHHHH---HHHhc-cccHHHHHHHHHH----HHcCCCCChHHHHHHHHHHHHHH
Confidence 4432 1 46777888888888853 22211 2555555544321 12111 11457789999999997
Q ss_pred hc---CCChHHHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccchh--------HHHHHHHHhh
Q 002190 665 FM---EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRT--------YGLLFDWLYP 733 (955)
Q Consensus 665 ~~---~~~~~~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~--------~~~~f~~i~~ 733 (955)
.. +....++..++.|+...|.++..++. .+++.+..++..+..+.|++++..+... ...+.. +.+
T Consensus 615 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 690 (971)
T 2x1g_F 615 SLLRPEEIPKYLDIIVSPCFEELQAICQADS---KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQ 690 (971)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHH
Confidence 53 23456899999999999999875431 1455677888899999999998875210 111222 233
Q ss_pred cchHHHHHhhhhhcCCCcchHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhh
Q 002190 734 AHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYK 813 (955)
Q Consensus 734 ~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k 813 (955)
..++.+..+++.+.+++.++..+.+++..++..-+.. + .| .+-+.+..++..|.+. +. .
T Consensus 691 ~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~--~---~p---~l~~~~~~l~~~~~~~-----------~~--~ 749 (971)
T 2x1g_F 691 RTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS--F---QP---MLQDLCLFIVASFQTR-----------CC--A 749 (971)
T ss_dssp TTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CT---HHHHHHHHHHHHCC-------------CC--H
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh--c---cc---cHHHHHHHHHHHHhcC-----------Cc--h
Confidence 4456667777777778888988888888877632111 1 11 2333333343333210 11 1
Q ss_pred hHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHH----HHHHhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhh
Q 002190 814 GMWICFTILARALAGNYVNFGVFELYGDRALSDALDI----ALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFIL 889 (955)
Q Consensus 814 ~l~~~l~il~~~l~~~~vnfg~~~~y~d~~~~~~l~~----~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~ 889 (955)
..+.++..++.+ ||.-.-+ -+.+.+.+.. +++++-..+.+++.+.|+++..||.++..+...+|..+.
T Consensus 750 ---~~l~l~~~~i~~----~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~ 821 (971)
T 2x1g_F 750 ---PTLEISKTAIVM----FFKDEGC-KPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLE 821 (971)
T ss_dssp ---HHHHHHHHHHTT----CCC------HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGG
T ss_pred ---HHHHHHHHHHHH----hCCCcch-HHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHc
Confidence 145555555543 1110000 0123333333 333222222347778999999999999999999999886
Q ss_pred cCChHH-HHHHHHHHHHhhccccHHHHhhhhcc
Q 002190 890 NLNTNT-FMHIVGSLESGLKGLDTNISSQVYAQ 921 (955)
Q Consensus 890 ~l~~~~-f~~~~~sl~~gl~~~~~~i~~~~l~~ 921 (955)
. ++. +..++++..+++++.+++.++.++..
T Consensus 822 ~--s~~~l~~i~~~~~~~l~~~~~~~~~s~~~f 852 (971)
T 2x1g_F 822 D--KTLAYDRLVFYAQRGMTLPESGAIRNSIQF 852 (971)
T ss_dssp C--TTSCHHHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred C--CcccHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5 344 79999999999999999888888887
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.94 E-value=4.3e-23 Score=264.90 Aligned_cols=597 Identities=14% Similarity=0.169 Sum_probs=361.9
Q ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCcccHHHHHHHHh-cCCChhHHHHHHHHHHHHHhh--cCCCHHHHH
Q 002190 3 SLAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILD-NALTPYALMLASSSLLKQVTE--HSLALQLRL 78 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~-~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~-~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~ 78 (955)
.+++++++++.+|+| ++++.|++|+++|.+|+++|++|..|..+|. .+++++++|+|+++|++.|++ ..+++++|.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 567899999999998 4777899999999999999999999999998 788999999999999999986 889999999
Q ss_pred HHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhccc
Q 002190 79 DIRNYLINYLAKRGP---ELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (955)
Q Consensus 79 ~ir~~ll~~l~~~~~---~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~ 155 (955)
.||+++++++.+... +.+++|++|++.+++.|+|++||+.|+ ++++++.+.++ +++.++..++.+|..+.+|..
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~-~~~~~~e~~L~iL~~L~Eev~ 165 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSK-QGETQTELVMFILLRLAEDVV 165 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHc
Confidence 999999999987521 256999999999999999999999998 89999998885 356678889999999998855
Q ss_pred CCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhh---------------hhHHHHHHHHHHHHhHhccccccccC
Q 002190 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKS---------------DVASRLQELALSLCLKCLSFDFVGTS 220 (955)
Q Consensus 156 ~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~---------------~~~~~l~~~~L~l~~~~Lsw~f~~~~ 220 (955)
..+. ....+.++.+..+++. ++.||..+..+|++... +....++..+|+++.++++|...+..
T Consensus 166 ~~~~-~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i 243 (1204)
T 3a6p_A 166 TFQT-LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243 (1204)
T ss_dssp TSCC-SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred cccc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHH
Confidence 4331 2234445556678776 99999999999976311 11235888999999999999875442
Q ss_pred CCCCcCccccccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHH----HHH
Q 002190 221 IDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL----MTG 296 (955)
Q Consensus 221 ~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~----l~~ 296 (955)
. + .++.++++++..+ .+++++..|++||.++++.+.+ ++++..++..+ +.+
T Consensus 244 ~-~------------------~~~~ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~~~----~~~~~~li~~l~~~~l~~ 298 (1204)
T 3a6p_A 244 T-A------------------ENCKLLEILCLLL--NEQELQLGAAECLLIAVSRKGK----LEDRKPLMVLFGDVAMHY 298 (1204)
T ss_dssp H-T------------------TTSHHHHHHHHGG--GCTTTHHHHHHHHHHHHTCCSC----HHHHGGGGGGGSHHHHHH
T ss_pred H-h------------------ccchHHHHHHHHc--CCHHHHHHHHHHHHHHHhCCCC----hhhHHHHHHHHhhHHHHH
Confidence 1 1 0134888888654 5788999999999999997643 34444333222 223
Q ss_pred HHHHhh--cCcCCCCcchHHHHHHHHHHhhhhcchhhhh----------cccChHHHHHHHHHHHHHHhhhhccccCcHH
Q 002190 297 TKEILQ--TGQGLADHDNYHEYCRLLGRFRVNYQLSELV----------NVEGYSDWIQLVAEFTLKSLQSWQWASSSVY 364 (955)
Q Consensus 297 ~~~il~--~~~~l~~~e~~~~~~~ll~rl~~~~~~~~l~----------~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~ 364 (955)
+..... ...++ ++...++++-++++...+.- .+. ..+.+..|++.+..+|.. + +.+...
T Consensus 299 l~~~~~~~~~~~~--~e~d~e~~k~l~~ll~~lg~-~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~----~--~~~vs~ 369 (1204)
T 3a6p_A 299 ILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGN-QLCALLGADSDVETPSNFGKYLESFLAFTTH----P--SQFLRS 369 (1204)
T ss_dssp HHHHHHTCCCCSC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS----S--CHHHHH
T ss_pred HHHHhhcCCCCCC--ccHHHHHHHHHHHHHHHHHH-HHHHHHhccccccChhHHHHHHHHHHHHHhC----c--cHHhHH
Confidence 333321 11122 23333566666655555431 122 234567888887777642 1 112333
Q ss_pred HHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHH---HhccccccccccC--CC---CCCCCCCCH-HHH----HHHHh
Q 002190 365 YLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGF---ITSRFNSVQAGFP--DD---LSDNPLDNV-ELL----QDQLD 431 (955)
Q Consensus 365 ~lL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~y---i~~~l~~~~~~~~--ee---~~e~~~~d~-~~~----~~~le 431 (955)
..+++|..+...... .....+..+.+++.... + .|+.-|+.... .+ +|++..+|. +.+ ++..+
T Consensus 370 ~~l~fW~~ll~~~~~---~~~~~~~~~l~~Ll~vl~~~l-~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d 445 (1204)
T 3a6p_A 370 STQMTWGALFRHEIL---SRDPLLLAIIPKYLRASMTNL-VKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE 445 (1204)
T ss_dssp HHHHHHHHHHSCTTT---TTCHHHHHHHHHHHHHHHHHH-SCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc---cccHHHHHHHHHHHHHHHHHH-HHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHH
Confidence 579999988875311 12234556667777775 3 45554431100 00 001111111 222 45667
Q ss_pred hhhhhhhcchhhHHHHHHHhHHHHHHHHHHHh-hcCCCCchhhhH-H--HHHHHH-----HHHHHHHHhhccccccCCCc
Q 002190 432 CFPYLCRFQYENSGLYIINTMEPILQSYTERA-RMQTGDKSEISV-I--EAKLAW-----IVHIIAAIVKIKQCTGCSLE 502 (955)
Q Consensus 432 ~i~~l~r~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~l~~-~--~e~L~w-----li~i~g~~l~~~~~~~~~~~ 502 (955)
.+-.+++..+..+...+.+.+.+.+....... .++.-+...-+. . ...-.| .+..+++++.|-... .+
T Consensus 446 ~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~---~e 522 (1204)
T 3a6p_A 446 VMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRT---LN 522 (1204)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcc---cc
Confidence 88888899999998888777766543211100 000000000000 0 000122 223334554433111 01
Q ss_pred cccccchHHHHHHHHH-HhhccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHH
Q 002190 503 SQEVLDAELSARVLQL-INVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLL 581 (955)
Q Consensus 503 ~~~~~d~~L~~~v~~l-~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~ 581 (955)
. +.++..+...++.. +++. . ..|.+....+..+.++.. |+..+ ...
T Consensus 523 ~-~~l~~~~~~~Ll~~ll~~~----------~-~~p~l~~~~i~~l~~l~~-~~~~~--------------------p~~ 569 (1204)
T 3a6p_A 523 R-EEIPVNDGIELLQMVLNFD----------T-KDPLILSCVLTNVSALFP-FVTYR--------------------PEF 569 (1204)
T ss_dssp T-TCCCHHHHHHHHHHHHHCC----------C-SCHHHHHHHHHHHHHHGG-GGGTC--------------------GGG
T ss_pred c-ccccHHHHHHHHHHHHhCC----------C-CChHHHHHHHHHHHHHHH-HHhcC--------------------chH
Confidence 0 11111222233332 2110 0 125566677776665443 33211 123
Q ss_pred HHHHHHHHHhcccCCC----------CchHHHHHHHHHHHHHhccccchhhhccchhHHHHHHhcccC--CCCCcccccc
Q 002190 582 LNVIVGKIATNLKCYT----------ESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTRE--HFPFLEEYRC 649 (955)
Q Consensus 582 ~~~~l~ki~~~L~~~~----------~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~~ll~~~~~~--~~~~l~~~~~ 649 (955)
+...+++++..+..++ ...++...|...|..++... ...+ .|.+..|.+..... ....+ .
T Consensus 570 L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~--~~~L--~p~~~~i~~~~~~~l~~~~~l--~-- 641 (1204)
T 3a6p_A 570 LPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY--PQLV--LPNFDMLYNHVKQLLSNELLL--T-- 641 (1204)
T ss_dssp HHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC--HHHH--GGGHHHHHHHHHHHHHSTTTS--C--
T ss_pred HHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh--hHHH--HHHHHHHHHHHHHHHhCcccc--c--
Confidence 3333444444433211 24478888899999888731 1222 14444444433210 00101 1
Q ss_pred cchhhHHHHHHHHHHhc-C---CChHHHHHhhHHHHHHHHH
Q 002190 650 SRSRTTFYYTIGWLIFM-E---ESPVKFKSSMDPLLQVFIS 686 (955)
Q Consensus 650 ~k~r~~~y~al~~i~~~-~---~~~~~~~~~l~p~~~~~~~ 686 (955)
.+.+..+|++++.+... . ...++++.++.|+.+.|.+
T Consensus 642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 45678999999888422 1 2355799999999998884
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.75 E-value=8.7e-19 Score=184.94 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=130.9
Q ss_pred chHHHHHHHHHHHhcccceeeecCCCcchhHHHHHHHHHHHHHHHhhhcCCCcchhhhhhhhhHHHHHHHHHHhhcCCcc
Q 002190 752 VTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYV 831 (955)
Q Consensus 752 v~~~iLkl~~~~~~n~~~ri~~~~~s~~~~~lf~~~~~il~~y~~~~~~~~~~~~~~~e~~k~l~~~l~il~~~l~~~~v 831 (955)
+-..||||+..++++. . +.......++-..+..++.+|.++ +|..+ ++|+++.+..+++-+.+.+.
T Consensus 45 vKkeiLkLiet~i~~~-~----d~~~v~~~~ippLl~~VL~DY~~~---vp~aR--epeVL~l~~tii~kl~~~i~---- 110 (321)
T 1w9c_A 45 VKRETLKLISGWVSRS-N----DPQMVAENFVPPLLDAVLIDYQRN---VPAAR--EPEVLSTMAIIVNKLGGHIT---- 110 (321)
T ss_dssp HHHHHHHHHHHHHTTC-S----CHHHHHHHTHHHHHHHHHHHHHTS---CGGGC--CTHHHHHHHHHHHHHGGGGG----
T ss_pred HHHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHHHHHHhC---Ccccc--cHHHHHHHHHHHHHHHHHhh----
Confidence 4459999999999853 1 011112336777778899999764 66666 78888866655555555544
Q ss_pred ccccccccCCCcHHHHHHHHHHHhcccChhhHHhhHHHHHHHHHHHHHHHhhhHHhhhcCChHHHHHHHHHHHHhhcccc
Q 002190 832 NFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLD 911 (955)
Q Consensus 832 nfg~~~~y~d~~~~~~l~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~~~~sl~~gl~~~~ 911 (955)
+.++.+++.+|++|+.|+.+|+.+||+||.+||+||+++++.|+..+.++|+++|+.+++||.||+||.+
T Consensus 111 ----------~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~ 180 (321)
T 1w9c_A 111 ----------AEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTM 180 (321)
T ss_dssp ----------GGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSS
T ss_pred ----------hhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccccc
Q 002190 912 TNISSQVYAQKWHQVICLCP 931 (955)
Q Consensus 912 ~~i~~~~l~~~~~~l~~l~~ 931 (955)
++|++.|++++.+++.|++.
T Consensus 181 r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 181 RNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.67 E-value=4.3e-11 Score=151.55 Aligned_cols=616 Identities=11% Similarity=0.094 Sum_probs=325.2
Q ss_pred CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh--c------C
Q 002190 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--H------S 71 (955)
Q Consensus 1 ~~~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~--~------~ 71 (955)
|++++++.++.....+| +++.| ||+.|.+++++|+.|..+.+|+.+. .+..++++|+..|++.|++ . .
T Consensus 1 M~d~~~l~~~L~~~~sp-d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIA-STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTTSG-GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHhcCC-CHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 78888888888886544 55566 9999999999999999999999664 5689999999999999986 4 6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 002190 72 LALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLV 151 (955)
Q Consensus 72 l~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv 151 (955)
+++++|..||+.+++.+..- ++.|+++++.+++.|.+.+||+.|| ++++++.+.+++++.....-++.+|..++
T Consensus 78 l~~~~k~~ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhCccchh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999863 3789999999999999999999998 89999988886666677888999999988
Q ss_pred hcccCCCCCCchHHhHhhhhhcchh--chHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccc
Q 002190 152 SEMNQPNPGLPSTHHRRVACSFRDQ--SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFG 229 (955)
Q Consensus 152 ~ef~~~~~~~~~~~h~k~~~~f~~~--~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~ 229 (955)
.++...- .+-+.....+.-++.. .+..+|......++....+
T Consensus 152 ~~~~~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~---------------------------------- 195 (960)
T 1wa5_C 152 KRWRPLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENN---------------------------------- 195 (960)
T ss_dssp GGGTTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------------------------------
T ss_pred HHHHHhh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------------------------------
Confidence 7653210 0000000000000000 0111111111111110000
Q ss_pred cccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCC--
Q 002190 230 TVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL-- 307 (955)
Q Consensus 230 ~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l-- 307 (955)
+.-+...+. ....+++++..+.... . ++.-...+...+..+..++......
T Consensus 196 --------------~~~~~~~~~--------~~~~~~k~~~~l~~~~---~--~~~~~~~~~~~~~~~~~~l~~~~p~~~ 248 (960)
T 1wa5_C 196 --------------KASLNILFD--------VLLVLIKLYYDFNCQD---I--PEFFEDNIQVGMGIFHKYLSYSNPLLE 248 (960)
T ss_dssp --------------CHHHHHHHH--------HHHHHHHHHHHHHSSC---C--CHHHHHTHHHHHHHHHHHHSCCSCCCC
T ss_pred --------------HHHHHHHHH--------HHHHHHHHHHHHhhcc---c--hHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 000000000 1112333332222111 0 1111112233333333444321110
Q ss_pred CC---cc------hHHHHHHHHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhc--cc-cCcHHHHHHHHHHhhc
Q 002190 308 AD---HD------NYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQ--WA-SSSVYYLLGLWSRLVT 375 (955)
Q Consensus 308 ~~---~e------~~~~~~~ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~--~~-~~~~~~lL~~W~~l~~ 375 (955)
.+ .+ .-...|+.+.++...|+ . .|..++..+..++...+..+. +. ++.....++||..++.
T Consensus 249 ~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~------~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~ 321 (960)
T 1wa5_C 249 DPDETEHASVLIKVKSSIQELVQLYTTRYE-D------VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR 321 (960)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHCH-H------HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC
Confidence 11 11 12346778888877763 2 223445555555555554332 21 2334468999998876
Q ss_pred CcccccCCCcchhh--hhHHHHHHHHHhccccccccccCCCCCCCC---------CCCHH-HHHHHHhhhhhhhhcchhh
Q 002190 376 SVPYLKGDAPSLLD--EFVPKITEGFITSRFNSVQAGFPDDLSDNP---------LDNVE-LLQDQLDCFPYLCRFQYEN 443 (955)
Q Consensus 376 ~~~~~~~~~~~~l~--~~~~~I~~~yi~~~l~~~~~~~~ee~~e~~---------~~d~~-~~~~~le~i~~l~r~~~~~ 443 (955)
...+. ..+. .+..++.+..+...|.-.++.. +..++++ .+|.+ ....-.+.+..+++...+.
T Consensus 322 ~~~~~-----~~~~~~~~l~~li~~~i~~~m~~~~~d~-e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~ 395 (960)
T 1wa5_C 322 IPKYF-----EIFNNESAMNNITEQIILPNVTLREEDV-ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL 395 (960)
T ss_dssp SHHHH-----GGGCSHHHHHHHHHHTHHHHHSCCGGGT-TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH
T ss_pred cHhHH-----HHHcCchHHHHHHHHHhHHhcCCCHHHH-HHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh
Confidence 32211 1222 4455555433434443221111 1111111 11111 1223345566667666667
Q ss_pred HHHHHHHhHHHHHHHHHHHhhcCCCCchhhhHHHHHHHHHHHHHHHHhh-ccccc-cC-CCccccccchHHHHHHHHHHh
Q 002190 444 SGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVK-IKQCT-GC-SLESQEVLDAELSARVLQLIN 520 (955)
Q Consensus 444 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~wli~i~g~~l~-~~~~~-~~-~~~~~~~~d~~L~~~v~~l~~ 520 (955)
..+.+.+.+.+.++.|... +..+|. .-.-+++..|++.. |.... +. .....-.++..+...|+..++
T Consensus 396 v~~~~l~~i~~~l~~~~~~---~~~~w~-------~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~ 465 (960)
T 1wa5_C 396 VTNIFLAHMKGFVDQYMSD---PSKNWK-------FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT 465 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CHH-------HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC---cchhHH-------HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc
Confidence 7777777777766655321 111222 23455556667653 22111 00 000111333345555554442
Q ss_pred hccccccccccccchhhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCch
Q 002190 521 VTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQ 600 (955)
Q Consensus 521 ~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~ 600 (955)
+.. ...|++-.+.+|++.+|+.. + . ... ...++..++ ..|. ..+.
T Consensus 466 --~~~--------~~~p~vr~~a~~~lg~~~~~-~-~-----~~~------------l~~~l~~l~----~~L~--d~~~ 510 (960)
T 1wa5_C 466 --SNN--------IPHIILRVDAIKYIYTFRNQ-L-T-----KAQ------------LIELMPILA----TFLQ--TDEY 510 (960)
T ss_dssp --CSS--------CSCHHHHHHHHHHHHHTGGG-S-C-----HHH------------HHHHHHHHH----HHTT--CSCH
T ss_pred --CCC--------CCCceehHHHHHHHHHHHhh-C-C-----HHH------------HHHHHHHHH----HHhC--CCCh
Confidence 110 11378999999999998863 2 1 100 112333333 3332 2356
Q ss_pred HHHHHHHHHHHHHhcccc--------chhhhccchhHHHHHHhcccCCCCCccc----ccccchhhHHHHHHHHHHhc--
Q 002190 601 EVIDHTLSLFLELASGYM--------TGKLLLKLDTIKFIVANHTREHFPFLEE----YRCSRSRTTFYYTIGWLIFM-- 666 (955)
Q Consensus 601 ~li~~~~~Ll~~l~~~~~--------~~~~l~~~~~~~~ll~~~~~~~~~~l~~----~~~~k~r~~~y~al~~i~~~-- 666 (955)
.|...|+..|..++.... .++..+ .|.+..+++.... .++. |...+....++++++.++..
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l-~p~l~~ll~~L~~----ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNLIA----LILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT-TTTHHHHHHHHHH----HHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHh-hhhHHHHHHHHHH----HHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 677777888888776321 112111 2445555543321 1111 11111224788899988632
Q ss_pred CCChHHHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHhhcchHHHHHhhhhh
Q 002190 667 EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHW 746 (955)
Q Consensus 667 ~~~~~~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~~~l~~~y 746 (955)
+.-..|+..+|.++...+..+..++ .++.. ...+++++..++++.++ ..+..+.+.+.|.+ ...++.
T Consensus 586 ~~~~p~~~~l~~~L~~~l~~~~~~~----~~~~~---~~~~~e~l~~l~~~~~~-~~~~~~~~~~~p~~----~~iL~~- 652 (960)
T 1wa5_C 586 DSIQPLFPQLLAQFIEIVTIMAKNP----SNPRF---THYTFESIGAILNYTQR-QNLPLLVDSMMPTF----LTVFSE- 652 (960)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHTTSC----CCHHH---HHHHHHHHHHHHHTSCG-GGHHHHHHHHHHHH----HHHHHT-
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCC----CCcHH---HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHH----HHHHHh-
Confidence 3323478888888888888775443 23333 24577888888887443 34555555555544 333332
Q ss_pred cCCCcchHHHHHHHHHHHh
Q 002190 747 TDTPEVTTPLLKFMAEFVL 765 (955)
Q Consensus 747 ~~~~~v~~~iLkl~~~~~~ 765 (955)
+..+....++.++..++.
T Consensus 653 -~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 653 -DIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp -TCTTTHHHHHHHHHHHHH
T ss_pred -hhHhhHHHHHHHHHHHHH
Confidence 223455556666665554
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.67 E-value=3.4e-12 Score=159.82 Aligned_cols=579 Identities=14% Similarity=0.162 Sum_probs=319.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHh--cCCChhHHHHHHHHHHHHHhh--cCCCHHHHH
Q 002190 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILD--NALTPYALMLASSSLLKQVTE--HSLALQLRL 78 (955)
Q Consensus 3 ~l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~IL~--~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~ 78 (955)
.+++|.++.+..++| +++.|++||+.|.+++++|+.+..+.+|+. .+.++.++++|+..|++.|++ ..+++++|.
T Consensus 11 ~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 567777777777654 789999999999999999999999999999 578899999999999999986 789999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCC
Q 002190 79 DIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPN 158 (955)
Q Consensus 79 ~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~ 158 (955)
.||+.+++.+. +.++.|++++..+++.|.+.+|++.|+ ++++.+.+.+++++......++..|..+.+++...
T Consensus 90 ~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~- 162 (852)
T 4fdd_A 90 FIKSECLNNIG----DSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI- 162 (852)
T ss_dssp HHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH-
T ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhcCccccH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 99999999853 335689999999999999999998887 78899888886555667777888888777665320
Q ss_pred CCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCCccc
Q 002190 159 PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWR 238 (955)
Q Consensus 159 ~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~ 238 (955)
+....+...+...+..| .+++.
T Consensus 163 --------------~~~~~~~~~~~~il~~l-------------------~~~l~------------------------- 184 (852)
T 4fdd_A 163 --------------LDSDVLDRPLNIMIPKF-------------------LQFFK------------------------- 184 (852)
T ss_dssp --------------HHHCSSSSCHHHHHHHH-------------------TTTTT-------------------------
T ss_pred --------------hchhhhcchHHHHHHHH-------------------HHHhc-------------------------
Confidence 00000100011111111 11110
Q ss_pred ccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCcchHHHHHH
Q 002190 239 PVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCR 318 (955)
Q Consensus 239 ~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~ 318 (955)
...+..+..+++||..++... .+....++..++..+...+.. .+++.-...|+
T Consensus 185 -----------------~~~~~vR~~A~~aL~~~~~~~------~~~~~~~~~~~l~~l~~~~~d----~~~~vr~~a~~ 237 (852)
T 4fdd_A 185 -----------------HSSPKIRSHAVACVNQFIISR------TQALMLHIDSFIENLFALAGD----EEPEVRKNVCR 237 (852)
T ss_dssp -----------------CSSHHHHHHHHHHHHTTTTTT------CHHHHTSHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 012234555666665554321 122223334444444444432 23344445788
Q ss_pred HHHHhhhhcchhhhhcccChHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHH
Q 002190 319 LLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEG 398 (955)
Q Consensus 319 ll~rl~~~~~~~~l~~~~~~~~fl~~l~~~t~~~l~~~~~~~~~~~~lL~~W~~l~~~~~~~~~~~~~~l~~~~~~I~~~ 398 (955)
.+.++...++- .+ ...+..+..+....++. .+++.-...+++|..+...... ...+..+...++..
T Consensus 238 ~L~~l~~~~~~-~~------~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~-----~~~~~~~~~~l~p~ 303 (852)
T 4fdd_A 238 ALVMLLEVRMD-RL------LPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPIC-----KDVLVRHLPKLIPV 303 (852)
T ss_dssp HHHHHHHHCHH-HH------GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTH-----HHHHTTTHHHHHHH
T ss_pred HHHHHHHhCHH-HH------HHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhH-----HHHHHHHHHHHHHH
Confidence 88888776531 11 11233333444443332 1122334579999998764210 11233344455544
Q ss_pred HHhccccccccc---cCCCCCCCC-C----CCHHHHHHHHhhhhhhhhcchhhHHHHHHHhHHHHHHHHHHHhhcCCCCc
Q 002190 399 FITSRFNSVQAG---FPDDLSDNP-L----DNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDK 470 (955)
Q Consensus 399 yi~~~l~~~~~~---~~ee~~e~~-~----~d~~~~~~~le~i~~l~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 470 (955)
.+ ..|...+.. ...|.+|++ + ++......-...++.+++..++...+.+.+.+.+.++ ..++
T Consensus 304 ll-~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~---------~~~~ 373 (852)
T 4fdd_A 304 LV-NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---------HHEW 373 (852)
T ss_dssp HH-HHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT---------CSSH
T ss_pred HH-HHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc---------CCCH
Confidence 33 223211100 001100111 1 1112233445667777766666666655555554321 1123
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccccccCCCccccccchHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHHH
Q 002190 471 SEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHF 550 (955)
Q Consensus 471 ~~l~~~~e~L~wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~~~~~~~~~~~~~~~s~~~l~~a~l~Fl~~~ 550 (955)
.. .+.-.|.+ |.+..|... .....-..++..++.+++ + ..+++-.+..|.+.++
T Consensus 374 ~~----R~aa~~al---g~i~~~~~~------~~~~~l~~~l~~l~~~l~------d-------~~~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 374 VV----KESGILVL---GAIAEGCMQ------GMIPYLPELIPHLIQCLS------D-------KKALVRSITCWTLSRY 427 (852)
T ss_dssp HH----HHHHHHHH---HHTTTTTHH------HHGGGHHHHHHHHHHHTT------C-------SSHHHHHHHHHHHHHT
T ss_pred HH----HHHHHHHH---HHHHhcchH------HHHHHHHHHHHHHHHHcC------C-------CCHHHHHHHHHHHHHH
Confidence 21 12334444 344433211 001111234445555442 1 1266888888888876
Q ss_pred HHHHhccccccchHHHHHHHHhhCCCchHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHhccccchhhhccchhHH
Q 002190 551 RKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIK 630 (955)
Q Consensus 551 ~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~ki~~~L~~~~~~~~li~~~~~Ll~~l~~~~~~~~~l~~~~~~~ 630 (955)
... +.++. ...-...++..+++ .+. ..+..+...++..|..++..... .+ .|.+.
T Consensus 428 ~~~-~~~~~--------------~~~~~~~ll~~L~~----~L~--d~~~~vr~~a~~aL~~l~~~~~~--~l--~~~l~ 482 (852)
T 4fdd_A 428 AHW-VVSQP--------------PDTYLKPLMTELLK----RIL--DSNKRVQEAACSAFATLEEEACT--EL--VPYLA 482 (852)
T ss_dssp HHH-HHHSC--------------TTTTHHHHHHHHHH----HHT--CSSHHHHHHHHHHHHHHHHHHGG--GG--GGGHH
T ss_pred HHH-hccch--------------HHHHHHHHHHHHHH----HHh--CCCHHHHHHHHHHHHHHHHHhhH--hh--HhHHH
Confidence 653 21110 00111234444443 222 23567777788888877764221 11 23344
Q ss_pred HHHHhcccCCCCCcccccccchhhHHHHHHHHHHhc-C---CChHHHHHhhHHHHHHHHHhccCCCccCCcHHHHHHHHH
Q 002190 631 FIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM-E---ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIG 706 (955)
Q Consensus 631 ~ll~~~~~~~~~~l~~~~~~k~r~~~y~al~~i~~~-~---~~~~~~~~~l~p~~~~~~~i~~~~~~~~~~~~~~~~i~~ 706 (955)
.++..... .++..+ .+....++++++.+.-. . ...+|+..+|.++.+.|..+... +++. ..
T Consensus 483 ~ll~~L~~----~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~------~~~~----~~ 547 (852)
T 4fdd_A 483 YILDTLVF----AFSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE------DKDL----FP 547 (852)
T ss_dssp HHHHHHHH----HHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT------CTTH----HH
T ss_pred HHHHHHHH----HHHHhC-hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc------cHHH----HH
Confidence 44433321 111111 23444678899888522 1 34679999999999999876522 1222 35
Q ss_pred HHHHHhhhhhhhccchhHHHHHHHHhhcchHHHHHhhhh---------h--cCCCcchHHHHHHHHHHHhc
Q 002190 707 LMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH---------W--TDTPEVTTPLLKFMAEFVLN 766 (955)
Q Consensus 707 ~l~~l~Gi~~a~~~~~~~~~~f~~i~~~~~~~~~~l~~~---------y--~~~~~v~~~iLkl~~~~~~n 766 (955)
+++++..++.+.+. .+....+-+++.....+...+.. + ..+.++....++++..++..
T Consensus 548 ~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~ 616 (852)
T 4fdd_A 548 LLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG 616 (852)
T ss_dssp HHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHH
Confidence 67888889988875 24444444444433333322211 1 12445666778888888774
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=1.8e-08 Score=126.17 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=122.2
Q ss_pred HHHHHHHHHHH-hcCCCHHHHHHHHHHHHhhccC--cccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh----------
Q 002190 4 LAQLEALCERL-YNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDNA-LTPYALMLASSSLLKQVTE---------- 69 (955)
Q Consensus 4 l~~lE~~~~~l-~~~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~~---------- 69 (955)
..++.++.+.. ++ ++++.|++|++.|.+++++ |+.|..+..+|.++ .++.++++|+..|++.|++
T Consensus 3 ~~~l~~~L~~~~~s-~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 3 TAEFAQLLENSILS-PDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHHcccC-cCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 35788888887 65 5778999999999999875 99999999999876 5789999999999998742
Q ss_pred ---cC-CCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCC-ChhhhhHHHHHHHHHhcc-cchhHHHH
Q 002190 70 ---HS-LALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQA-TSDHYAIG 143 (955)
Q Consensus 70 ---~~-l~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~-~~~~~~~i~~i~~~l~~~-~~~~~~~g 143 (955)
.. +++++|..||+.+++.+.. .+..+++++..+++.|.+..|+. .|+ ++++.+.+.+..+ ++.....+
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~----~~~~vr~~~~~~l~~i~~~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~a 155 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVS----IEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRAS 155 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCC----CchHHHHHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhcCCCHHHHHHH
Confidence 33 9999999999999998743 24678999999999999999984 787 8899998888655 66778888
Q ss_pred HHHHHHHHhccc
Q 002190 144 LKILNQLVSEMN 155 (955)
Q Consensus 144 l~lL~~lv~ef~ 155 (955)
+.++..+..++.
T Consensus 156 l~~l~~l~~~~~ 167 (861)
T 2bpt_A 156 LLALGYMCESAD 167 (861)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHcCC
Confidence 999999998865
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.02 E-value=1.8e-05 Score=99.02 Aligned_cols=140 Identities=15% Similarity=0.197 Sum_probs=112.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC--cccHHHHHHHHhcC-CChhHHHHHHHHHHHHHh-----------h--c
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDNA-LTPYALMLASSSLLKQVT-----------E--H 70 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~IL~~S-~~~~~~f~a~~~L~~~i~-----------~--~ 70 (955)
|.++.+.+++ ++++.|++|++.|.++.++ |+.|..+..+|... .++.++.+|+.+|++.+. + .
T Consensus 3 l~~~L~~~~s-~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 3 LITILEKTVS-PDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 4455555554 5778999999999999876 89999999999875 578999999999999873 2 5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccC-CChhhhhHHHHHHHHHhcc--cchhHHHHHHHH
Q 002190 71 SLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWF-DDDRFRDLVKESTNFLSQA--TSDHYAIGLKIL 147 (955)
Q Consensus 71 ~l~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~-~~~~~~~~i~~i~~~l~~~--~~~~~~~gl~lL 147 (955)
.++++.|..||+.+++.+... +..+ +++..+++.|.+..|+ +.|+ ++++.+.+.+... ++.....++..|
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~~~~w~--~ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTE----TYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 699999999999999987542 2235 8899999999999987 6777 7888888877655 556677788888
Q ss_pred HHHHhcc
Q 002190 148 NQLVSEM 154 (955)
Q Consensus 148 ~~lv~ef 154 (955)
..++.++
T Consensus 155 ~~l~~~~ 161 (876)
T 1qgr_A 155 GYICQDI 161 (876)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 8888764
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.79 E-value=1e-06 Score=101.26 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=116.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhcc--CcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh-------------c
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFSV--NTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE-------------H 70 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~--~~~~~~~~~~IL~~S~-~~~~~f~a~~~L~~~i~~-------------~ 70 (955)
|.++...+++ ++++.|++||+.|.+++. .|+.|..+..+|.+++ ++.++..|+..|++.+++ .
T Consensus 3 l~~~L~~~~s-~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 3 LITILEKTVS-PDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 5566666665 467899999999999986 5999999999999874 789999999999999842 3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCC-ChhhhhHHHHHHHHHhcc--cchhHHHHHHHH
Q 002190 71 SLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQA--TSDHYAIGLKIL 147 (955)
Q Consensus 71 ~l~~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~-~~~~~~~i~~i~~~l~~~--~~~~~~~gl~lL 147 (955)
.+++++|..||+.+++.+... +..+ +++..+++.|.+..|++ .|+ ++++.+.+.+.++ ++.....++..|
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~----~~~v-~~~~~~i~~ia~~~~~~~~w~--~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTE----TYRP-SSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC----CSSS-CSHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC----Cchh-hHHHHHHHHHHHHhccccccH--HHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 589999999999999986542 2346 89999999999999985 676 7899988887655 667788899999
Q ss_pred HHHHhccc
Q 002190 148 NQLVSEMN 155 (955)
Q Consensus 148 ~~lv~ef~ 155 (955)
..++.++.
T Consensus 155 ~~l~~~~~ 162 (462)
T 1ibr_B 155 GYICQDID 162 (462)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhCC
Confidence 99998763
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.43 E-value=5.2 Score=51.36 Aligned_cols=242 Identities=11% Similarity=0.026 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCC
Q 002190 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNT----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLA 73 (955)
Q Consensus 4 l~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~----------~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~ 73 (955)
-.+|.++.+.+. ++|++.|.+|..-|.+.-+.+ .-.+.+...|. ++++.++-.|+.+|..++.. ++
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~--~~ 80 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK--VK 80 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT--SC
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh--CC
Confidence 356777777755 467889999988776654332 12333444444 68899999999998887765 56
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC------h-hhhhHHHHHHHHHh-cccchhHHHHHH
Q 002190 74 LQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD------D-RFRDLVKESTNFLS-QATSDHYAIGLK 145 (955)
Q Consensus 74 ~~~k~~ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~------~-~~~~~i~~i~~~l~-~~~~~~~~~gl~ 145 (955)
++.+..+...+++-+. +....+|...+.+++.+...-.++. . ..+.+++.+...+. ..+.....-++.
T Consensus 81 ~~~~~~i~~~Ll~~l~----d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNML----SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp HHHHHHHHHHHHHHTT----CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 6676777777766542 3344679899999999998766541 0 12367777777775 244567788888
Q ss_pred HHHHHHhcccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCc
Q 002190 146 ILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESS 225 (955)
Q Consensus 146 lL~~lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~ 225 (955)
.+.+++..+... + . .++..+....+..|.. .. ..+...+++.+-.+.... + ++
T Consensus 157 ~l~~~~~~~~~~-l----~-----------~~~~~ll~~l~~~L~~---~~-~~vR~~a~~al~~l~~~~--~---~~-- 209 (1230)
T 1u6g_C 157 IMADMLSRQGGL-L----V-----------NFHPSILTCLLPQLTS---PR-LAVRKRTIIALGHLVMSC--G---NI-- 209 (1230)
T ss_dssp HHHHHHHHTCSS-C----T-----------TTHHHHHHHHGGGGGC---SS-HHHHHHHHHHHHHHTTTC----------
T ss_pred HHHHHHHHhHhH-H----H-----------HHHHHHHHHHHHHHcC---Cc-HHHHHHHHHHHHHHHHhc--C---HH--
Confidence 898888765431 1 0 1123333333333322 11 234445555444433211 0 00
Q ss_pred CccccccCCCcccccccCcchHHHHHHHHhhc-CCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhh
Q 002190 226 EEFGTVQIPSAWRPVLEDPSTLQIFFDYYAIT-EAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQ 302 (955)
Q Consensus 226 ~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~-~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~ 302 (955)
+ -+.+++.+....... .+..+..+.+|+..++...+..| ..|+..++..+...+.
T Consensus 210 ---------------~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~------~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 210 ---------------V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI------GEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGG------TTSCTTHHHHHHHHHS
T ss_pred ---------------H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHhc
Confidence 0 123455555544322 24577778999998886544322 2355666666666655
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=53.64 E-value=1.7e+02 Score=28.67 Aligned_cols=193 Identities=13% Similarity=0.046 Sum_probs=102.0
Q ss_pred CcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 002190 36 NTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLD-----IRNYLINYLAKRGPELQSFVTASLIQLLCRL 110 (955)
Q Consensus 36 ~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~-----ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i 110 (955)
.+..|+.....|. |.++.++..|+..|.+.+.+ +.+.+.. .-..+++.+.. ...-++...+.++..+
T Consensus 10 ~~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~---~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 10 HGSELPQMTQQLN-SDDMQEQLSATRKFSQILSD---GNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNI 81 (252)
T ss_dssp TTCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHH---HHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcC---CCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 4555777777775 56788999999999887765 1222222 33445554432 2255677777776666
Q ss_pred HhhccCCChh--hhhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHH
Q 002190 111 TKFGWFDDDR--FRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTS 188 (955)
Q Consensus 111 ~K~~W~~~~~--~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~ 188 (955)
....-..... ....++.+.+++..+++..+..++..|..+...- ....... .+...++. .+..
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~--~~~~~i~~----L~~l 146 (252)
T 4db8_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---------NEQIQAV--IDAGALPA----LVQL 146 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---------HHHHHHH--HHTTHHHH----HHHG
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC---------chHHHHH--HHCCCHHH----HHHH
Confidence 5421000000 0124566677776556666777777777774321 1110111 11222222 2223
Q ss_pred HhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHH
Q 002190 189 LGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALEC 268 (955)
Q Consensus 189 L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~c 268 (955)
|+.. ...+...++..+.++..... .-+..+.+.+.++.+.++....++.....++.+
T Consensus 147 L~~~----~~~v~~~a~~~L~~l~~~~~-------------------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 203 (252)
T 4db8_A 147 LSSP----NEQILQEALWALSNIASGGN-------------------EQIQAVIDAGALPALVQLLSSPNEQILQEALWA 203 (252)
T ss_dssp GGCS----CHHHHHHHHHHHHHHTTSCH-------------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HhCC----CHHHHHHHHHHHHHHHcCCh-------------------HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 3221 12455556655544332110 011123335567777777655567788999999
Q ss_pred HHHHhc
Q 002190 269 LVRLAS 274 (955)
Q Consensus 269 L~~l~s 274 (955)
|..++.
T Consensus 204 L~~l~~ 209 (252)
T 4db8_A 204 LSNIAS 209 (252)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 999984
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=51.16 E-value=1.8e+02 Score=28.25 Aligned_cols=227 Identities=15% Similarity=0.040 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCc----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHH
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFSVNT----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQL 76 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~----------~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~ 76 (955)
++.++..+-. ++.+.|..|-..|..+.... +..+....+|.. .++.++-.|+.+|.++... .++.
T Consensus 4 i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~---~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG---PDEA 78 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS---CHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC---ChHH
Confidence 4556655544 44677888888888886443 346666666654 4588899999888777443 2344
Q ss_pred HHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh---hhhhHHHHHHHHHhcccchhHHHHHHHHHHHHh
Q 002190 77 RLDIRN-YLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD---RFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (955)
Q Consensus 77 k~~ir~-~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~---~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (955)
+..+.+ -.+..+.+.-.+...-++...+.++..+.... ++.. .....++.+.+++...++....-++..|..+..
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 433321 13333333222334667777777777776421 0000 011356677777765566677777777777764
Q ss_pred cccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCcccccc
Q 002190 153 EMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (955)
Q Consensus 153 ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~ 232 (955)
.- ...++.. .+...++ ..+.+|+.. .+.+...++.++.++...+.
T Consensus 158 ~~---------~~~~~~~--~~~~~i~----~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~---------------- 202 (252)
T 4hxt_A 158 GP---------DEAIKAI--VDAGGVE----VLVKLLTST----DSEVQKEAARALANIASGPT---------------- 202 (252)
T ss_dssp SC---------HHHHHHH--HHTTHHH----HHHHHTTCS----CHHHHHHHHHHHHHHTTSBH----------------
T ss_pred CC---------HHHHHHH--HHCcCHH----HHHHHHCCC----CHHHHHHHHHHHHHHHcCCH----------------
Confidence 21 1111111 1122222 223333321 12455566655544442111
Q ss_pred CCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhcccc
Q 002190 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR 277 (955)
Q Consensus 233 ~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~ 277 (955)
.-+..+.+.+.++.+.++....++..+..++.+|..++.-..
T Consensus 203 ---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 203 ---SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred ---HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 011123345677777777655667788999999999887543
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=40.83 E-value=2e+02 Score=32.30 Aligned_cols=97 Identities=8% Similarity=0.088 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhc---cCc--------ccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHH
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFS---VNT--------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQ 75 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~---~~~--------~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~ 75 (955)
+|.+++.+.+ .+.+.+.+|-+.+.++- ++| ...+..-.+|..+.++.+|+.|+.+|.++-.. +++
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~---~~e 134 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG---TSE 134 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS---CHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC---CHH
Confidence 6788888764 45666766766666553 223 24777788898899999999999999876543 444
Q ss_pred HHHHHH-----HHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 002190 76 LRLDIR-----NYLINYLAKRGPELQSFVTASLIQLLCRLT 111 (955)
Q Consensus 76 ~k~~ir-----~~ll~~l~~~~~~~~~~v~~~l~~~la~i~ 111 (955)
.+..+. ..+++.+ .+...-|+.+...++..|.
T Consensus 135 ~~~~vv~~GaIp~Lv~lL----~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLL----ASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp HHHHHHHTTHHHHHHHHT----TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----cCCCHHHHHHHHHHHHHHH
Confidence 544433 2333333 2233456666666666554
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=37.70 E-value=4.6e+02 Score=29.06 Aligned_cols=264 Identities=10% Similarity=0.009 Sum_probs=139.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhccCc-----------ccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCH
Q 002190 6 QLEALCERLYNSQDSVERAHAENTLKCFSVNT-----------DYISQCQFILDNALTPYALMLASSSLLKQVTEHSLAL 74 (955)
Q Consensus 6 ~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~-----------~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~ 74 (955)
.++.+++.+.+ ++++.|..|-..|..+.+.. +.++..-.+|..+.++.+++.|+.+|.++... ++
T Consensus 75 ~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~ 150 (528)
T 4b8j_A 75 SLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG---TS 150 (528)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS---CH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CH
Confidence 36677777754 46678888888887774221 36788888898777799999999999877653 23
Q ss_pred HHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhh------hHHHHHHHHH-hcccchhHHHHHHH
Q 002190 75 QLRLDIRN-YLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFR------DLVKESTNFL-SQATSDHYAIGLKI 146 (955)
Q Consensus 75 ~~k~~ir~-~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~------~~i~~i~~~l-~~~~~~~~~~gl~l 146 (955)
+.+..+.+ =.+..+++.-.+...-|+...+.++..+... .+..+ ..++.+.+.+ ...+......++..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD----SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT----CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44443322 1223333222233457888888888877642 12221 2344555555 22344556666667
Q ss_pred HHHHHhcccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcC
Q 002190 147 LNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSE 226 (955)
Q Consensus 147 L~~lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~ 226 (955)
|..+...-... ... .....++ ..+.+|+.. ...+...++..+..+..- ..
T Consensus 227 L~~L~~~~~~~----~~~--------~~~~~l~----~L~~lL~~~----~~~v~~~a~~aL~~l~~~---------~~- 276 (528)
T 4b8j_A 227 LSNFCRGKPQP----SFE--------QTRPALP----ALARLIHSN----DEEVLTDACWALSYLSDG---------TN- 276 (528)
T ss_dssp HHHHHCSSSCC----CHH--------HHTTHHH----HHHHHTTCC----CHHHHHHHHHHHHHHTSS---------CH-
T ss_pred HHHHHcCCCCC----cHH--------HHHHHHH----HHHHHHCCC----CHHHHHHHHHHHHHHHcC---------CH-
Confidence 77766442110 111 0122222 222333221 123444555444332210 00
Q ss_pred ccccccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHH-HHHHHHHHHHhhcCc
Q 002190 227 EFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFL-AHLMTGTKEILQTGQ 305 (955)
Q Consensus 227 ~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l-~~~l~~~~~il~~~~ 305 (955)
.-...+.+.+.+..+..+.....+.....++.+|..++.- ++..+...+ ..++..+..++...
T Consensus 277 ---------~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~------~~~~~~~~~~~~~l~~L~~lL~~~- 340 (528)
T 4b8j_A 277 ---------DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG------DDAQTQCIIDHQALPCLLSLLTQN- 340 (528)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------CHHHHHHHHTTTHHHHHHHHHHSC-
T ss_pred ---------HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC------CHHHHHHHHHhhhHHHHHHHHcCC-
Confidence 0111223445677777776545667888899999998852 122222222 22445555555532
Q ss_pred CCCCcchHHHHHHHHHHhhh
Q 002190 306 GLADHDNYHEYCRLLGRFRV 325 (955)
Q Consensus 306 ~l~~~e~~~~~~~ll~rl~~ 325 (955)
.+.+.-.+.|..+..+..
T Consensus 341 --~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 341 --LKKSIKKEACWTISNITA 358 (528)
T ss_dssp --CCHHHHHHHHHHHHHHHT
T ss_pred --CcHHHHHHHHHHHHHHHC
Confidence 133344456666666654
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=35.82 E-value=5e+02 Score=28.87 Aligned_cols=264 Identities=11% Similarity=0.054 Sum_probs=138.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccC----------cccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHH
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFSVN----------TDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQL 76 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~----------~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~ 76 (955)
+..+++.+-.+.++..|..|-..|.++... .+..+....+|. +.++.++..|+.+|.++... +++.
T Consensus 132 i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~---~~~~ 207 (530)
T 1wa5_B 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGD---STDY 207 (530)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC---Cccc
Confidence 334444333333566788888888777642 355677777776 46888999999998877653 2233
Q ss_pred HHH-----HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCC-C-hhhhhHHHHHHHHHhcccchhHHHHHHHHHH
Q 002190 77 RLD-----IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-D-DRFRDLVKESTNFLSQATSDHYAIGLKILNQ 149 (955)
Q Consensus 77 k~~-----ir~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~-~-~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~ 149 (955)
+.. +-..|++.+. +....++...+.++..+....=+. . ......++.+..++...++.....++..|..
T Consensus 208 ~~~~~~~~~l~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFN----SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp HHHHHHTTCHHHHHHGGG----SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHcCcHHHHHHHhc----cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 322 2233444332 234567777888888877643111 1 1123567777777765555666677777777
Q ss_pred HHhcccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccc
Q 002190 150 LVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFG 229 (955)
Q Consensus 150 lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~ 229 (955)
+...- -. ..+.. .....++.+ +.+|... ...+...++.++-.+..-+ +
T Consensus 284 L~~~~--------~~-~~~~~--~~~~~v~~L----v~lL~~~----~~~v~~~a~~~L~~l~~~~-------~------ 331 (530)
T 1wa5_B 284 LSDGP--------QE-AIQAV--IDVRIPKRL----VELLSHE----STLVQTPALRAVGNIVTGN-------D------ 331 (530)
T ss_dssp HHSSC--------HH-HHHHH--HHTTCHHHH----HHGGGCS----CHHHHHHHHHHHHHHTTSC-------H------
T ss_pred HhCCC--------HH-HHHHH--HhcCcHHHH----HHHHCCC----ChhhHHHHHHHHHHHHcCC-------H------
Confidence 76421 01 11111 112223222 2233221 1234555555554332110 0
Q ss_pred cccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHH-HHHHHHHHHHhhcCcCCC
Q 002190 230 TVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFL-AHLMTGTKEILQTGQGLA 308 (955)
Q Consensus 230 ~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l-~~~l~~~~~il~~~~~l~ 308 (955)
.....+.+...+..+..+....++..+..+..+|..++.- +++....++ ..++..+..++.. .
T Consensus 332 ------~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~----~ 395 (530)
T 1wa5_B 332 ------LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG------NTEQIQAVIDANLIPPLVKLLEV----A 395 (530)
T ss_dssp ------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS------CHHHHHHHHHTTCHHHHHHHHHH----S
T ss_pred ------HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------CHHHHHHHHHCCCHHHHHHHHhc----C
Confidence 0111223345777777776545567888899999998852 122222222 2344445555543 1
Q ss_pred CcchHHHHHHHHHHhhhh
Q 002190 309 DHDNYHEYCRLLGRFRVN 326 (955)
Q Consensus 309 ~~e~~~~~~~ll~rl~~~ 326 (955)
+.+.-...+..+..+...
T Consensus 396 ~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSG 413 (530)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 233333456666666543
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=35.02 E-value=4.3e+02 Score=29.52 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=34.0
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCcchHHHHHHHHHHhhh
Q 002190 246 TLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRV 325 (955)
Q Consensus 246 ~l~~lf~~~~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~ll~rl~~ 325 (955)
++..+...........+..+.++|..++..-+ ++ .+...++..+...+.. .+++.-...+..+.++..
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-----~~---~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-----PE---ITKTDLVPAFQNLMKD----CEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-----HH---HHHHTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC-----cc---cchhHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHH
Confidence 44544444332234567788888888875321 11 2333445545455542 122222234555555555
Q ss_pred hc
Q 002190 326 NY 327 (955)
Q Consensus 326 ~~ 327 (955)
..
T Consensus 311 ~~ 312 (588)
T 1b3u_A 311 NL 312 (588)
T ss_dssp TS
T ss_pred Hh
Confidence 44
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=31.51 E-value=3.7e+02 Score=26.08 Aligned_cols=225 Identities=13% Similarity=0.064 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------CcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHH
Q 002190 7 LEALCERLYNSQDSVERAHAENTLKCFSV----------NTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQL 76 (955)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~----------~~~~~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~ 76 (955)
++.+...+.++. .+.|..|-..|..+-. ..+.++..-.+|..+ ++.++..|+.+|.++... .++.
T Consensus 14 ~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~---~~~~ 88 (252)
T 4db8_A 14 LPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG---GNEQ 88 (252)
T ss_dssp HHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS---CHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC---CHHH
Confidence 455565665543 3456555555533221 124455666666554 488999999998877543 2334
Q ss_pred HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCC-C-hhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhc
Q 002190 77 RLDIRNY-LINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-D-DRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 77 k~~ir~~-ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~-~-~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~e 153 (955)
+..+.+. .+..+.+.-.+....++...+.++..+....-.. . -.....++.+.+++..+++.....++..|..+...
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4333221 3333333212234567777777777664321000 0 00113566677777655556667777777777632
Q ss_pred ccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccC
Q 002190 154 MNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQI 233 (955)
Q Consensus 154 f~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~ 233 (955)
- ...++.. .....++.+ +.+|+.. ...+...++..+.++...+.
T Consensus 169 ~---------~~~~~~~--~~~~~i~~L----~~ll~~~----~~~v~~~a~~~L~~l~~~~~----------------- 212 (252)
T 4db8_A 169 G---------NEQIQAV--IDAGALPAL----VQLLSSP----NEQILQEALWALSNIASGGN----------------- 212 (252)
T ss_dssp C---------HHHHHHH--HHTTCHHHH----HHGGGCS----SHHHHHHHHHHHHHHTTSCH-----------------
T ss_pred C---------hHHHHHH--HHCCCHHHH----HHHHCCC----CHHHHHHHHHHHHHHhcCCH-----------------
Confidence 1 1111211 112223322 2222221 12455566655554442111
Q ss_pred CCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHHhc
Q 002190 234 PSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLAS 274 (955)
Q Consensus 234 p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l~s 274 (955)
.-+..+.+.+.++.+..+....++..+..+..+|..+++
T Consensus 213 --~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 213 --EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp --HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred --HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 011122334566666665554567778888888877764
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=29.43 E-value=2.1e+02 Score=32.91 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhc
Q 002190 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~e 153 (955)
-.++..-+.+.-.+...+||.+.+.++..+.+.+ ++..+...+++.+.+++...++.-..-++..|.++..+
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 3444444544434557899999999999999854 66543335788888888644555666677777776554
No 23
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=29.01 E-value=2.8e+02 Score=32.02 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=72.9
Q ss_pred HhcCCCHHHHHHHHHHHHhhc-cCcccHHHHHHHHh---cCCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 002190 14 LYNSQDSVERAHAENTLKCFS-VNTDYISQCQFILD---NALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLA 89 (955)
Q Consensus 14 l~~~~~~~~r~~Ae~~L~~f~-~~~~~~~~~~~IL~---~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir~~ll~~l~ 89 (955)
+.++++.+.|+.+=-.+..+. .+||-...+-.-+. +++|++.+-.|+.+|-+.. .++--..+-..+.+.+.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-----~~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-----SREMAEAFAGEIPKILV 156 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-----CHHHHHHHTTHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-----CHHHHHHHHHHHHHHHh
Confidence 344455566666665565554 33443333332222 2567777666666664441 22322233333333332
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHh
Q 002190 90 KRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (955)
Q Consensus 90 ~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (955)
+ .+..+|||.+.+.++..+.+.. |+.-+...+++.+.+++...++.-..-++.++.++..
T Consensus 157 ~--~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 157 A--GDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp C--SSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred C--CCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 1 4567899999999999999854 3321112578888888864444455555556666553
No 24
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.77 E-value=4.6e+02 Score=26.28 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=66.8
Q ss_pred cCCChhHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhhccCCChhhhhH
Q 002190 49 NALTPYALMLASSSLLKQVTE---HSLALQLRLDIRNYLINYLAKRG-PELQSFVTASLIQLLCRLTKFGWFDDDRFRDL 124 (955)
Q Consensus 49 ~S~~~~~~f~a~~~L~~~i~~---~~l~~~~k~~ir~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~ 124 (955)
..+|..++--|+.++...+.. ...........-..++..+++++ .+...-++.....++..++....+.. .+
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~----~~ 140 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT----QS 140 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH----HH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH----HH
Confidence 478888999999999887765 11222222233455566666652 33345666666666666665443221 35
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhcccCCC
Q 002190 125 VKESTNFLSQATSDHYAIGLKILNQLVSEMNQPN 158 (955)
Q Consensus 125 i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~ 158 (955)
++.+...+++.++....-.+.+|..++.+|....
T Consensus 141 ~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~ 174 (278)
T 4ffb_C 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN 174 (278)
T ss_dssp HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc
Confidence 5666666655567778888999999999987643
No 25
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=27.30 E-value=9.5e+02 Score=29.52 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=50.2
Q ss_pred cchHHHHHHHHhhcCCcch-HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCcchHHHHHHHHHH
Q 002190 244 PSTLQIFFDYYAITEAPLS-KEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGR 322 (955)
Q Consensus 244 ~~~l~~lf~~~~~~~~~l~-~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~e~~~~~~~ll~r 322 (955)
|.+++.+...|....|..+ ...|.|...+..-=|..+ .+.-...+..++..+.+++.... -+.+|.-.+|-+++.+
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~--~~~~~~il~~vf~~Tl~mi~~~~-~~~Pe~r~~ff~ll~~ 830 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMI--PQGVILILQSVFECTLDMINKDF-TEYPEHRVEFYKLLKV 830 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHSSCS-SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHhccc-ccChHHHHHHHHHHHH
Confidence 4477788888876655443 456666666654333322 23445666777777778887422 1345666678888888
Q ss_pred hhhhc
Q 002190 323 FRVNY 327 (955)
Q Consensus 323 l~~~~ 327 (955)
+....
T Consensus 831 ~~~~~ 835 (1023)
T 4hat_C 831 INEKS 835 (1023)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 87764
No 26
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.51 E-value=1.4e+02 Score=27.70 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=33.9
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHH--HHHHHH----HHHhcCCCchHHHHHHHHHHHH
Q 002190 47 LDNALTPYALMLASSSLLKQVTEHSLALQLRLDI--RNYLIN----YLAKRGPELQSFVTASLIQLLC 108 (955)
Q Consensus 47 L~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~i--r~~ll~----~l~~~~~~~~~~v~~~l~~~la 108 (955)
|..+.|+.++.+|+..|+..+++ -+..-..++ +.|+-+ .+..+ .+.+.-|++++..++-
T Consensus 62 l~~~~n~~v~l~AL~LLd~~vkN--cG~~fh~eva~~~fl~e~Lvk~~~~k-~~~~~~Vk~kil~li~ 126 (157)
T 1elk_A 62 IVGNKNFHEVMLALTVLETCVKN--CGHRFHVLVASQDFVESVLVRTILPK-NNPPTIVHDKVLNLIQ 126 (157)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHH--SCHHHHHHHTSHHHHHHHTHHHHSTT-TCCCHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHH--hCHHHHHHHhhHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHH
Confidence 33457899999999999999987 111111111 333333 33222 2334578888766543
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=23.55 E-value=9.7e+02 Score=28.36 Aligned_cols=137 Identities=9% Similarity=-0.022 Sum_probs=77.0
Q ss_pred hcCCCHHHHHHHHHHHHhhcc--CcccHH----HHHHHHhcCCChhHHHHHHHHHHHHHhh-c-CCCHHHHHHHHHHHHH
Q 002190 15 YNSQDSVERAHAENTLKCFSV--NTDYIS----QCQFILDNALTPYALMLASSSLLKQVTE-H-SLALQLRLDIRNYLIN 86 (955)
Q Consensus 15 ~~~~~~~~r~~Ae~~L~~f~~--~~~~~~----~~~~IL~~S~~~~~~f~a~~~L~~~i~~-~-~l~~~~k~~ir~~ll~ 86 (955)
...+++..|..|-+.+....+ .++.|+ .....+. +.++.++.-|+.+|.+.... . .+..+.-....+.++.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 334556678777777766542 344554 3344443 45678888899888888775 2 1111110011234444
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhhccCCC--hhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhc
Q 002190 87 YLAKRGPELQSFVTASLIQLLCRLTKFGWFDD--DRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 87 ~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~--~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~e 153 (955)
.+.+.-.+...-||.....++..+++.. .+. ...+.+++.+.+.+...+++.+..++..|..++..
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISR-TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 4444334445678888888777655431 110 01235666666666545556777788888877764
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=22.63 E-value=6.3e+02 Score=25.80 Aligned_cols=147 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHhhccCccc---------HHHHHH-HHhcCCChhHHHHHH
Q 002190 2 ESLAQLEALCERLYNS-----------QDSVERAHAENTLKCFSVNTDY---------ISQCQF-ILDNALTPYALMLAS 60 (955)
Q Consensus 2 ~~l~~lE~~~~~l~~~-----------~~~~~r~~Ae~~L~~f~~~~~~---------~~~~~~-IL~~S~~~~~~f~a~ 60 (955)
++.+.+..+...+-+| .+.+.|..|-..|..+.++.+. ++.+-. +|. |.++.++-.|+
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa 103 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHH
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHH-HHHHHHhcCC-CchHHHHHHHHHHHHHHHhhccCCChhhhh--HHHHHHHHHhccc
Q 002190 61 SSLLKQVTEHSLALQLRLDIRNY-LINYLAKRGP-ELQSFVTASLIQLLCRLTKFGWFDDDRFRD--LVKESTNFLSQAT 136 (955)
Q Consensus 61 ~~L~~~i~~~~l~~~~k~~ir~~-ll~~l~~~~~-~~~~~v~~~l~~~la~i~K~~W~~~~~~~~--~i~~i~~~l~~~~ 136 (955)
.+|-++... .+..+..+.+. .+..+++.-. +.+.-++.+.+.+++.+++..=+....+.+ .++-+...+..++
T Consensus 104 ~~Lg~ia~~---n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 104 QLIGTCSQN---VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp HHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHhC---CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC
Q ss_pred chhHHHHHHHHHHHHh
Q 002190 137 SDHYAIGLKILNQLVS 152 (955)
Q Consensus 137 ~~~~~~gl~lL~~lv~ 152 (955)
..-+.-++..|+.+..
T Consensus 181 ~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
No 29
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=22.01 E-value=8.3e+02 Score=27.00 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=65.0
Q ss_pred cCCCHHHHHHHHHHHHhhccCccc-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 002190 16 NSQDSVERAHAENTLKCFSVNTDY-------ISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYL 88 (955)
Q Consensus 16 ~~~~~~~r~~Ae~~L~~f~~~~~~-------~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir~~ll~~l 88 (955)
..++...|+.|-+.|.++...-.. .+.+..+ .++.+..++-.|+.++...... ++...+..+...+.+.+
T Consensus 97 ~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l-~~~~~~~~R~~a~~~l~~~~~~--~~~~~~~~l~~~l~~l~ 173 (588)
T 1b3u_A 97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL-AGGDWFTSRTSACGLFSVCYPR--VSSAVKAELRQYFRNLC 173 (588)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH-HTCSSHHHHHHHGGGHHHHTTT--SCHHHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHh
Confidence 334556677777777766532111 1222222 2345556666666555444333 44444444444444432
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHhc
Q 002190 89 AKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE 153 (955)
Q Consensus 89 ~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~e 153 (955)
.+....||......+..+.+.. .+......+++-+..+++..+...+..++..|..+...
T Consensus 174 ----~d~~~~VR~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 174 ----SDDTPMVRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp ----TCSCHHHHHHHHHHHHHHHHTS-CHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHh-cHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 3445678888888888777642 11000123445555555433334445555555555543
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=21.80 E-value=5.3e+02 Score=24.64 Aligned_cols=232 Identities=15% Similarity=0.066 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC
Q 002190 40 ISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIR-NYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD 118 (955)
Q Consensus 40 ~~~~~~IL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~ir-~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~ 118 (955)
.+..-.+|.. .++.++..|+.+|.++... +++.+..+. .-.+..+.+.-.+...-++...+.++..+....
T Consensus 4 i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---- 75 (252)
T 4hxt_A 4 VEKLVKLLTS-TDSETQKEAARDLAEIASG---PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP---- 75 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcC---CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC----
Confidence 3445555654 4488999999999888665 223333222 223333333222334677778777777776531
Q ss_pred hhh------hhHHHHHHHHHhcccchhHHHHHHHHHHHHhcccCCCCCCchHHhHhhhhhcchhchHHHHHHHHHHHhhh
Q 002190 119 DRF------RDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQL 192 (955)
Q Consensus 119 ~~~------~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ef~~~~~~~~~~~h~k~~~~f~~~~L~~if~~~~~~L~~~ 192 (955)
.+. ...++.+..++..++++....++..|..+...- ..+++.. .+...++. .+..|+..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~--~~~~~i~~----L~~~l~~~ 140 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP---------DEAIKAI--VDAGGVEV----LVKLLTST 140 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC---------HHHHHHH--HHTTHHHH----HHHHTTCS
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---------HHHHHHH--HHCCCHHH----HHHHHcCC
Confidence 111 135666777776556677777777777776421 1122222 11222322 22333321
Q ss_pred hhhhHHHHHHHHHHHHhHhccccccccCCCCCcCccccccCCCcccccccCcchHHHHHHHHhhcCCcchHHHHHHHHHH
Q 002190 193 KSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRL 272 (955)
Q Consensus 193 ~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~~~~~~~~p~~W~~~l~~~~~l~~lf~~~~~~~~~l~~~~l~cL~~l 272 (955)
...+...++.++.++..... ..+..+.+.+.++.+..+....++..+..++.+|..+
T Consensus 141 ----~~~~~~~a~~~L~~l~~~~~-------------------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 141 ----DSEVQKEAARALANIASGPD-------------------EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp ----CHHHHHHHHHHHHHHTTSCH-------------------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHcCCH-------------------HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 12455556655544322100 1112234456788888776656677889999999999
Q ss_pred hccccCCCCChHHHHHHH-HHHHHHHHHHhhcCcCCCCcchHHHHHHHHHHhhhhc
Q 002190 273 ASVRRSLFTNDAARSKFL-AHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNY 327 (955)
Q Consensus 273 ~sl~~~~f~~~~~~~~~l-~~~l~~~~~il~~~~~l~~~e~~~~~~~ll~rl~~~~ 327 (955)
+.- +++.+.... ...+..+..++.. .+++.-...+..+..+....
T Consensus 198 ~~~------~~~~~~~l~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 198 ASG------PTSAIKAIVDAGGVEVLQKLLTS----TDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp TTS------BHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHHHTC
T ss_pred HcC------CHHHHHHHHHCCCHHHHHHHHCC----CcHHHHHHHHHHHHHHHcCC
Confidence 851 122222221 1244444455542 23333344666666665553
Done!