Query 002191
Match_columns 955
No_of_seqs 740 out of 3770
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 4E-115 1E-119 1051.1 48.6 614 61-741 14-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 1E-110 3E-115 963.7 37.1 488 79-585 11-508 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 4E-108 1E-112 940.7 49.9 476 58-581 3-489 (505)
4 4e04_A Bacteriophytochrome (li 100.0 1.8E-80 6.1E-85 669.3 33.6 306 60-399 8-315 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 2.2E-80 7.7E-85 669.0 32.3 304 57-402 28-336 (343)
6 2ool_A Sensor protein; bacteri 100.0 3.9E-77 1.3E-81 652.5 35.6 306 61-400 22-329 (337)
7 4glq_A Methyl-accepting chemot 100.0 3.7E-35 1.3E-39 294.6 17.2 152 220-399 3-155 (171)
8 2k2n_A Sensor protein, SYB-CPH 100.0 3.2E-28 1.1E-32 244.8 16.9 165 231-399 1-168 (172)
9 3ewk_A Sensor protein; PAS dom 99.9 8.9E-26 3E-30 237.6 27.6 221 630-870 1-227 (227)
10 2lb5_A Sensor histidine kinase 99.9 5.9E-27 2E-31 243.2 17.6 183 211-399 13-198 (208)
11 4f3l_A Mclock, circadian locom 99.8 1.1E-18 3.8E-23 196.3 18.8 238 620-878 88-360 (361)
12 4f3l_B BMAL1B; BHLH, PAS, circ 99.8 4E-18 1.4E-22 193.4 19.2 234 621-876 89-386 (387)
13 3mr0_A Sensory box histidine k 99.7 1.1E-16 3.7E-21 154.5 15.6 138 611-753 2-141 (142)
14 3a0r_A Sensor protein; four he 99.7 4.8E-17 1.6E-21 182.1 7.8 189 744-952 3-194 (349)
15 3mr0_A Sensory box histidine k 99.6 8.3E-16 2.8E-20 148.3 13.6 137 742-887 2-138 (142)
16 3p7n_A Sensor histidine kinase 99.6 8.8E-16 3E-20 164.2 13.8 174 734-918 48-238 (258)
17 3rty_A Period circadian protei 99.6 5.4E-15 1.8E-19 163.3 16.7 222 630-873 5-263 (339)
18 2pr5_A Blue-light photorecepto 99.6 1.4E-14 4.8E-19 137.4 15.4 127 621-754 2-131 (132)
19 2gj3_A Nitrogen fixation regul 99.6 1.4E-14 4.7E-19 135.0 13.6 117 748-875 4-120 (120)
20 2gj3_A Nitrogen fixation regul 99.6 2E-14 6.7E-19 133.9 13.8 117 617-738 4-120 (120)
21 4hia_A LOV protein; PAS, HTH, 99.6 4.5E-15 1.6E-19 148.1 10.1 124 617-745 6-132 (176)
22 3f1p_B ARYL hydrocarbon recept 99.6 1.2E-14 4.2E-19 135.4 11.8 114 752-876 5-120 (121)
23 3p7n_A Sensor histidine kinase 99.6 7.3E-15 2.5E-19 157.0 11.6 174 609-794 54-232 (258)
24 3f1p_B ARYL hydrocarbon recept 99.5 1.9E-14 6.5E-19 134.0 11.4 115 620-739 4-120 (121)
25 3k3c_A Protein RV1364C/MT1410; 99.5 6.6E-14 2.3E-18 136.8 15.3 138 617-758 16-156 (158)
26 3ue6_A Aureochrome1; PAS/LOV d 99.5 2.1E-14 7.2E-19 141.0 11.6 132 608-744 25-159 (166)
27 3f1p_A Endothelial PAS domain- 99.5 2.4E-14 8.3E-19 132.3 10.9 107 763-877 10-117 (117)
28 3nja_A Probable ggdef family p 99.5 4.7E-14 1.6E-18 130.6 12.1 122 613-739 2-125 (125)
29 3nja_A Probable ggdef family p 99.5 4.8E-14 1.6E-18 130.5 11.7 124 744-876 2-125 (125)
30 4dj3_A Period circadian protei 99.5 2.7E-13 9.3E-18 148.1 19.2 224 623-870 31-278 (317)
31 3ue6_A Aureochrome1; PAS/LOV d 99.5 3.6E-14 1.2E-18 139.4 11.1 135 735-880 21-158 (166)
32 2pr5_A Blue-light photorecepto 99.5 8.9E-14 3E-18 131.8 13.3 122 753-887 3-127 (132)
33 4hia_A LOV protein; PAS, HTH, 99.5 1.1E-13 3.9E-18 137.8 13.9 123 747-880 5-130 (176)
34 3t50_A Blue-light-activated hi 99.5 1.1E-13 3.6E-18 129.6 12.5 123 623-750 2-127 (128)
35 4dj2_A Period circadian protei 99.5 4.2E-13 1.4E-17 146.8 18.2 226 623-873 31-282 (320)
36 3h9w_A Diguanylate cyclase wit 99.5 1.6E-13 5.5E-18 126.4 12.5 110 763-879 4-114 (115)
37 3kx0_X Uncharacterized protein 99.5 6.1E-14 2.1E-18 141.8 9.7 141 615-760 34-182 (185)
38 3f1p_A Endothelial PAS domain- 99.5 8E-14 2.7E-18 128.8 9.7 108 627-739 8-116 (117)
39 1d06_A Nitrogen fixation regul 99.5 3.4E-13 1.2E-17 127.4 13.8 125 735-872 2-130 (130)
40 3bwl_A Sensor protein; structu 99.5 6.9E-13 2.4E-17 124.0 15.0 124 733-872 1-126 (126)
41 3sw1_A Sensory box protein; li 99.4 5.6E-13 1.9E-17 130.3 13.9 131 618-753 25-158 (162)
42 3h9w_A Diguanylate cyclase wit 99.4 2.8E-13 9.7E-18 124.7 10.7 112 627-742 2-114 (115)
43 3gdi_A Period circadian protei 99.4 2.1E-12 7.2E-17 140.7 18.9 227 622-872 19-270 (309)
44 1d06_A Nitrogen fixation regul 99.4 8.9E-13 3E-17 124.5 12.9 123 606-735 4-130 (130)
45 3icy_A Sensor protein; sensory 99.4 8.4E-13 2.9E-17 121.1 11.8 117 747-872 2-118 (118)
46 3mxq_A Sensor protein; PSI2, M 99.4 5.8E-13 2E-17 130.0 10.9 130 610-741 14-151 (152)
47 2vv6_A FIXL, sensor protein FI 99.4 1.6E-12 5.4E-17 120.6 13.3 114 626-746 1-118 (119)
48 1n9l_A PHOT-LOV1, putative blu 99.4 1.2E-12 4.2E-17 119.8 12.1 103 763-873 4-109 (109)
49 3t50_A Blue-light-activated hi 99.4 8.7E-13 3E-17 123.2 11.2 116 755-881 3-121 (128)
50 2v0u_A NPH1-1, LOV2; kinase, t 99.4 1.6E-12 5.5E-17 122.8 13.1 134 620-759 4-140 (146)
51 3lyx_A Sensory BOX/ggdef domai 99.4 2.3E-12 8E-17 117.7 13.4 119 616-739 5-123 (124)
52 3luq_A Sensor protein; PAS, hi 99.4 2.1E-12 7.3E-17 117.3 12.8 112 618-735 3-114 (114)
53 4eet_B Phototropin-2; LOV, blu 99.4 2.9E-12 1E-16 116.4 13.5 111 623-738 2-115 (115)
54 3mqq_A Transcriptional regulat 99.4 8.6E-13 2.9E-17 122.5 9.9 115 619-740 4-119 (120)
55 2z6d_A Phototropin-2; PAS-fold 99.4 4E-12 1.4E-16 117.0 14.2 123 616-743 4-129 (130)
56 3lyx_A Sensory BOX/ggdef domai 99.4 4.2E-12 1.4E-16 116.0 13.6 120 746-876 4-123 (124)
57 2r78_A Sensor protein; sensory 99.4 5.4E-12 1.8E-16 117.0 14.4 114 611-735 4-117 (117)
58 3eeh_A Putative light and redo 99.4 2.6E-12 8.9E-17 118.0 12.1 124 739-872 1-125 (125)
59 3ewk_A Sensor protein; PAS dom 99.4 5.2E-12 1.8E-16 132.1 15.3 111 765-883 2-112 (227)
60 4eet_B Phototropin-2; LOV, blu 99.4 5.9E-12 2E-16 114.4 13.7 110 755-875 3-115 (115)
61 3k3c_A Protein RV1364C/MT1410; 99.4 1.2E-12 4E-17 127.8 9.5 127 745-884 13-145 (158)
62 2vv6_A FIXL, sensor protein FI 99.4 4E-12 1.4E-16 117.8 12.6 110 763-882 4-117 (119)
63 3eeh_A Putative light and redo 99.4 2.4E-12 8.1E-17 118.2 11.0 121 609-735 2-125 (125)
64 3sw1_A Sensory box protein; li 99.4 2E-12 6.8E-17 126.4 10.9 129 748-887 24-155 (162)
65 3mqq_A Transcriptional regulat 99.4 1.6E-12 5.5E-17 120.6 9.6 116 750-877 4-119 (120)
66 2v0u_A NPH1-1, LOV2; kinase, t 99.4 6.6E-12 2.3E-16 118.5 14.0 117 751-878 4-123 (146)
67 1n9l_A PHOT-LOV1, putative blu 99.3 5.9E-12 2E-16 115.2 12.9 105 627-736 2-109 (109)
68 3icy_A Sensor protein; sensory 99.3 2.2E-12 7.4E-17 118.3 9.9 115 616-735 2-118 (118)
69 2z6d_A Phototropin-2; PAS-fold 99.3 7.8E-12 2.7E-16 115.0 13.4 123 746-879 3-128 (130)
70 2r78_A Sensor protein; sensory 99.3 8.1E-12 2.8E-16 115.8 13.1 113 743-872 5-117 (117)
71 3luq_A Sensor protein; PAS, hi 99.3 6E-12 2E-16 114.3 11.2 113 748-872 2-114 (114)
72 1v9y_A Heme PAS sensor protein 99.3 6.1E-12 2.1E-16 123.0 11.8 137 603-746 25-165 (167)
73 3p01_A Two-component response 99.3 3.4E-11 1.1E-15 121.5 17.4 152 211-398 27-179 (184)
74 3mxq_A Sensor protein; PSI2, M 99.3 5.4E-12 1.8E-16 123.1 10.8 124 742-877 15-150 (152)
75 3mjq_A Uncharacterized protein 99.3 7.2E-12 2.5E-16 116.1 9.5 120 621-748 2-121 (126)
76 1v9y_A Heme PAS sensor protein 99.3 8.6E-12 3E-16 121.8 10.5 142 729-883 20-165 (167)
77 2wkq_A NPH1-1, RAS-related C3 99.3 2.3E-11 7.7E-16 135.0 14.6 120 622-746 15-137 (332)
78 3bwl_A Sensor protein; structu 99.3 2.7E-11 9.1E-16 113.0 12.8 121 605-735 4-126 (126)
79 2wkq_A NPH1-1, RAS-related C3 99.3 2.9E-11 1E-15 134.1 15.1 117 754-881 16-135 (332)
80 2kdk_A ARYL hydrocarbon recept 99.3 2.5E-11 8.6E-16 112.3 11.3 111 754-875 8-120 (121)
81 2kdk_A ARYL hydrocarbon recept 99.3 2.3E-11 7.9E-16 112.6 11.0 112 622-738 7-120 (121)
82 3vol_A Aerotaxis transducer AE 99.2 5.3E-11 1.8E-15 125.1 12.4 155 748-923 21-204 (233)
83 3kx0_X Uncharacterized protein 99.2 1.3E-11 4.4E-16 124.6 6.5 123 745-880 33-161 (185)
84 3olo_A Two-component sensor hi 99.2 9E-11 3.1E-15 107.4 11.7 111 613-735 8-118 (118)
85 3mjq_A Uncharacterized protein 99.2 4.3E-11 1.5E-15 110.8 9.5 116 752-881 2-117 (126)
86 2zmf_A CAMP and CAMP-inhibited 99.2 5.1E-10 1.8E-14 112.4 17.7 156 214-399 13-177 (189)
87 4eho_A Bacteriophytochrome, PA 99.2 6E-12 2.1E-16 151.6 3.9 118 749-878 518-635 (635)
88 3vol_A Aerotaxis transducer AE 99.2 2.1E-10 7.4E-15 120.5 14.2 150 617-795 21-183 (233)
89 1byw_A Protein (human ERG pota 99.1 5.7E-10 2E-14 99.1 12.5 104 764-874 3-110 (110)
90 3olo_A Two-component sensor hi 99.1 2.1E-10 7.2E-15 104.8 9.8 112 743-872 7-118 (118)
91 2l0w_A Potassium voltage-gated 99.1 8.4E-10 2.9E-14 102.8 13.8 114 620-737 21-138 (138)
92 2l0w_A Potassium voltage-gated 99.1 9.3E-10 3.2E-14 102.5 13.8 112 753-874 23-138 (138)
93 3fc7_A HTR-like protein, senso 99.1 9.3E-11 3.2E-15 108.6 6.5 108 616-735 17-125 (125)
94 3oov_A Methyl-accepting chemot 99.1 3E-09 1E-13 104.6 17.5 157 218-399 6-163 (169)
95 3k2n_A Sigma-54-dependent tran 99.1 6.7E-09 2.3E-13 103.2 19.5 160 213-399 5-167 (177)
96 3trc_A Phosphoenolpyruvate-pro 99.1 5.1E-09 1.7E-13 103.1 18.2 158 211-399 5-162 (171)
97 1byw_A Protein (human ERG pota 99.0 2.1E-09 7.3E-14 95.3 13.3 105 629-737 2-110 (110)
98 2qkp_A Uncharacterized protein 99.0 5E-10 1.7E-14 109.1 9.4 123 618-748 19-144 (151)
99 3e0y_A Conserved domain protei 99.0 5E-09 1.7E-13 104.1 16.8 150 216-398 17-166 (181)
100 3ci6_A Phosphoenolpyruvate-pro 99.0 1.4E-08 4.9E-13 99.3 19.8 155 213-398 9-163 (171)
101 2qyb_A Membrane protein, putat 99.0 3.6E-09 1.2E-13 105.8 15.2 143 228-399 15-159 (181)
102 3mfx_A Sensory BOX/ggdef famil 99.0 9.4E-10 3.2E-14 104.1 10.0 111 618-736 7-124 (129)
103 4f3l_A Mclock, circadian locom 99.0 6.7E-10 2.3E-14 124.6 9.9 109 628-741 251-360 (361)
104 2vlg_A Sporulation kinase A; h 99.0 1.5E-09 5E-14 99.8 10.4 94 622-723 3-96 (111)
105 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.1E-09 3.7E-14 124.0 11.5 108 627-739 277-386 (387)
106 3d72_A Vivid PAS protein VVD; 99.0 2E-09 6.7E-14 103.4 11.7 100 763-870 36-149 (149)
107 4hi4_A Aerotaxis transducer AE 99.0 4.4E-09 1.5E-13 97.8 13.3 105 618-737 5-121 (121)
108 2e4s_A CAMP and CAMP-inhibited 99.0 8.4E-09 2.9E-13 103.6 16.2 157 212-399 11-177 (189)
109 2vlg_A Sporulation kinase A; h 99.0 2.4E-09 8.1E-14 98.4 10.4 95 753-861 3-97 (111)
110 1ykd_A Adenylate cyclase; GAF 99.0 7.3E-08 2.5E-12 109.5 25.2 322 215-589 10-378 (398)
111 3d72_A Vivid PAS protein VVD; 98.9 2.9E-09 1E-13 102.1 11.2 105 623-733 31-149 (149)
112 3fg8_A Uncharacterized protein 98.9 3.5E-10 1.2E-14 104.8 4.2 113 612-737 6-118 (118)
113 3ibj_A CGMP-dependent 3',5'-cy 98.9 7.3E-08 2.5E-12 117.7 25.9 202 214-451 15-222 (691)
114 3hcy_A Putative two-component 98.9 4.4E-09 1.5E-13 101.8 11.6 139 228-399 1-140 (151)
115 3mfx_A Sensory BOX/ggdef famil 98.9 1.9E-09 6.6E-14 102.0 8.7 110 749-872 7-123 (129)
116 3fc7_A HTR-like protein, senso 98.9 1.3E-09 4.3E-14 100.8 6.7 108 747-872 17-125 (125)
117 4hi4_A Aerotaxis transducer AE 98.9 1.1E-08 3.8E-13 95.0 11.9 105 749-874 5-121 (121)
118 3b33_A Sensor protein; structu 98.9 1.3E-08 4.3E-13 93.0 11.2 105 621-735 10-115 (115)
119 1mc0_A 3',5'-cyclic nucleotide 98.9 3E-08 1E-12 111.3 16.7 203 214-451 14-222 (368)
120 2qkp_A Uncharacterized protein 98.8 1.1E-08 3.8E-13 99.5 11.1 117 749-879 19-138 (151)
121 2ykf_A Pdtas, probable sensor 98.3 5.1E-10 1.7E-14 122.2 0.0 173 710-901 111-305 (305)
122 3o5y_A Sensor protein; GAF dom 98.8 1.1E-07 3.9E-12 93.8 16.6 139 229-399 4-144 (165)
123 3fg8_A Uncharacterized protein 98.8 2.1E-09 7.3E-14 99.4 3.8 112 744-874 7-118 (118)
124 1ll8_A PAS kinase; PAS domain, 98.7 1.6E-08 5.5E-13 92.4 7.3 100 763-872 9-113 (114)
125 2w0n_A Sensor protein DCUS; si 98.7 6.6E-09 2.3E-13 94.5 4.6 108 610-735 7-118 (118)
126 1ll8_A PAS kinase; PAS domain, 98.7 1.1E-08 3.7E-13 93.6 5.8 103 626-735 6-113 (114)
127 3a0r_A Sensor protein; four he 98.7 2.4E-09 8E-14 119.3 1.4 121 614-746 4-125 (349)
128 3cax_A Uncharacterized protein 98.7 5.3E-08 1.8E-12 109.3 11.9 115 618-743 239-353 (369)
129 1mc0_A 3',5'-cyclic nucleotide 98.7 5.7E-07 1.9E-11 100.8 20.3 150 217-399 184-338 (368)
130 3b33_A Sensor protein; structu 98.6 1.5E-07 5.2E-12 85.6 11.6 105 752-872 10-115 (115)
131 4dj3_A Period circadian protei 98.6 1.4E-07 4.6E-12 103.0 12.0 123 629-756 175-314 (317)
132 2vjw_A GAF-B, GAF family prote 98.6 9.4E-07 3.2E-11 85.6 16.1 130 230-399 1-135 (149)
133 2w0n_A Sensor protein DCUS; si 98.6 4E-08 1.4E-12 89.2 5.4 108 742-872 8-118 (118)
134 2w3g_A DOSS, two component sen 98.5 3.1E-07 1.1E-11 88.2 11.3 141 228-399 4-146 (153)
135 1ykd_A Adenylate cyclase; GAF 98.5 1.8E-06 6.1E-11 97.9 18.5 142 228-399 212-377 (398)
136 3a0s_A Sensor protein; PAS-fol 98.5 6.2E-07 2.1E-11 77.0 11.3 95 627-733 1-96 (96)
137 2jhe_A Transcription regulator 98.5 1.3E-07 4.5E-12 95.2 8.0 109 615-738 77-189 (190)
138 4fpp_A Phosphotransferase; fou 98.5 1.5E-07 5.1E-12 99.6 7.3 83 859-946 18-100 (247)
139 3rty_A Period circadian protei 98.5 5E-07 1.7E-11 99.5 11.3 105 628-737 154-264 (339)
140 1nwz_A PYP, photoactive yellow 98.4 9E-07 3.1E-11 81.9 10.8 102 621-729 20-122 (125)
141 3cax_A Uncharacterized protein 98.4 2.7E-07 9.3E-12 103.5 8.6 113 749-878 239-351 (369)
142 2c2a_A Sensor histidine kinase 98.4 1.2E-07 4.1E-12 100.8 5.2 82 869-955 2-87 (258)
143 1mzu_A PPR; photoactive yellow 98.4 1.2E-06 4.2E-11 81.1 11.1 99 623-728 27-126 (129)
144 3dba_A CONE CGMP-specific 3',5 98.4 5.3E-06 1.8E-10 82.9 15.7 154 213-396 6-171 (180)
145 3ibj_A CGMP-dependent 3',5'-cy 98.4 3.1E-06 1.1E-10 103.3 16.5 140 229-399 195-338 (691)
146 3a0s_A Sensor protein; PAS-fol 98.4 1.1E-06 3.8E-11 75.4 8.7 93 763-870 3-96 (96)
147 3mmh_A FRMSR, methionine-R-sul 98.3 2.3E-05 7.9E-10 77.0 18.3 146 213-397 15-161 (167)
148 2jhe_A Transcription regulator 98.3 7.8E-07 2.7E-11 89.4 7.3 107 747-875 78-189 (190)
149 1nwz_A PYP, photoactive yellow 98.3 1.9E-06 6.5E-11 79.7 9.1 101 752-865 20-121 (125)
150 1mzu_A PPR; photoactive yellow 98.3 1.7E-06 5.7E-11 80.2 8.6 100 753-865 26-126 (129)
151 4dj2_A Period circadian protei 98.3 2.9E-06 1E-10 92.5 11.6 104 628-736 176-282 (320)
152 3gdi_A Period circadian protei 98.3 4.3E-06 1.5E-10 90.8 12.3 103 629-736 166-271 (309)
153 3bjc_A CGMP-specific 3',5'-cyc 98.2 2E-07 6.7E-12 116.7 0.0 156 214-399 153-320 (878)
154 2ykf_A Pdtas, probable sensor 97.5 2E-07 7E-12 101.5 0.0 120 622-753 174-302 (305)
155 4ew8_A Sensor protein DIVL; si 98.0 1.4E-05 4.8E-10 85.0 8.7 72 884-955 32-105 (268)
156 1vhm_A Protein YEBR; structura 97.9 0.00037 1.3E-08 70.2 18.3 142 215-397 30-172 (195)
157 3ksh_A Putative uncharacterize 97.8 0.00069 2.4E-08 65.7 16.4 130 228-396 29-159 (160)
158 1f5m_A GAF; CGMP binding, sign 97.7 0.0006 2E-08 67.9 15.6 132 228-395 39-176 (180)
159 3rfb_A Putative uncharacterize 97.6 0.0022 7.4E-08 62.8 16.5 144 212-395 15-159 (171)
160 3d36_A Sporulation kinase B; G 97.5 4.8E-05 1.7E-09 79.3 4.7 65 890-954 12-78 (244)
161 3zcc_A HAMP, osmolarity sensor 97.4 0.00019 6.5E-09 64.9 6.9 60 885-949 53-113 (114)
162 1gkz_A [3-methyl-2-oxobutanoat 97.4 0.00013 4.5E-09 82.2 7.0 66 890-955 119-186 (388)
163 3jz3_A Sensor protein QSEC; he 97.3 1.1E-05 3.7E-10 83.0 -4.5 64 892-955 2-67 (222)
164 3cit_A Sensor histidine kinase 97.2 0.007 2.4E-07 57.9 15.1 134 212-399 13-148 (160)
165 3bjc_A CGMP-specific 3',5'-cyc 97.1 8.4E-05 2.9E-09 92.9 0.0 142 229-399 348-509 (878)
166 3zrx_A AF1503 protein, osmolar 96.5 0.0057 1.9E-07 54.8 7.9 58 889-951 57-115 (115)
167 1oj5_A Steroid receptor coacti 96.5 0.0026 8.9E-08 58.5 5.3 98 628-731 7-109 (132)
168 1oj5_A Steroid receptor coacti 96.5 0.0033 1.1E-07 57.8 5.7 100 765-873 10-114 (132)
169 2btz_A Pyruvate dehydrogenase 96.4 0.0016 5.6E-08 73.4 4.5 60 893-954 96-167 (394)
170 2e0a_A Pyruvate dehydrogenase 96.2 0.0061 2.1E-07 68.7 7.2 58 893-952 96-166 (394)
171 2q8g_A [pyruvate dehydrogenase 95.8 0.0084 2.9E-07 67.8 6.1 59 894-954 107-177 (407)
172 1y8o_A [pyruvate dehydrogenase 93.7 0.054 1.9E-06 61.3 5.6 53 896-950 121-185 (419)
173 3eea_A GAF domain/HD domain pr 93.4 3.2 0.00011 37.9 15.2 139 230-399 13-157 (162)
174 3ehh_A Sensor kinase (YOCF pro 91.7 0.23 7.9E-06 50.0 6.5 57 890-946 26-84 (218)
175 2ool_A Sensor protein; bacteri 88.1 4.4 0.00015 43.8 13.2 78 765-851 45-124 (337)
176 3szt_A QCSR, quorum-sensing co 86.6 14 0.00048 37.6 15.7 145 219-393 8-153 (237)
177 4dah_A Sporulation kinase D; a 86.5 7.6 0.00026 38.6 13.4 125 614-780 54-180 (217)
178 1b3q_A Protein (chemotaxis pro 86.5 0.29 9.9E-06 54.5 2.8 50 890-950 8-58 (379)
179 2w1r_A Spovt, stage V sporulat 78.9 2.9 0.0001 38.0 5.9 119 235-397 4-122 (123)
180 1p0z_A Sensor kinase CITA; tra 76.4 7.8 0.00027 35.4 8.2 77 763-873 51-127 (131)
181 3qp6_A CVIR transcriptional re 73.5 68 0.0023 33.1 15.5 133 213-371 21-158 (265)
182 3lif_A Putative diguanylate cy 70.7 74 0.0025 31.9 15.1 58 708-779 125-183 (254)
183 3e4o_A C4-dicarboxylate transp 68.4 35 0.0012 36.2 12.1 119 618-779 102-221 (305)
184 4dah_A Sporulation kinase D; a 66.7 13 0.00046 36.7 8.0 93 749-872 58-150 (217)
185 3e98_A GAF domain of unknown f 66.1 86 0.0029 32.1 14.0 133 216-397 105-242 (252)
186 4eu0_A PELD; C-DI-GMP, signali 65.4 74 0.0025 33.5 13.5 125 231-397 24-151 (298)
187 1ixm_A SPO0B, protein (sporula 64.7 14 0.00047 36.4 7.4 46 893-942 22-67 (192)
188 3by8_A Sensor protein DCUS; hi 64.2 21 0.00072 33.0 8.3 74 764-872 58-131 (142)
189 3qp1_A CVIR transcriptional re 62.1 1.1E+02 0.0039 29.2 16.2 147 216-389 19-170 (182)
190 1p0z_A Sensor kinase CITA; tra 59.2 29 0.001 31.4 8.2 77 629-736 51-127 (131)
191 4ew7_A Conjugative transfer: r 56.6 96 0.0033 26.7 12.2 42 619-660 21-62 (127)
192 3nhq_A Bacteriophytochrome; ph 51.2 6.5 0.00022 45.0 2.5 40 216-257 322-361 (505)
193 2q0o_A Probable transcriptiona 44.3 2.5E+02 0.0085 27.9 14.4 119 221-372 11-135 (236)
194 3by8_A Sensor protein DCUS; hi 39.6 34 0.0012 31.5 5.3 25 713-737 109-133 (142)
195 3lif_A Putative diguanylate cy 37.5 1.2E+02 0.0042 30.2 9.8 29 841-871 123-151 (254)
196 3clo_A Transcriptional regulat 36.1 2.8E+02 0.0095 28.0 12.2 47 765-815 46-97 (258)
197 4e04_A Bacteriophytochrome (li 35.6 22 0.00075 38.1 3.5 47 630-677 31-77 (327)
198 1l3l_A Transcriptional activat 33.1 3.5E+02 0.012 26.7 12.2 119 221-372 9-133 (234)
199 3e4o_A C4-dicarboxylate transp 32.2 1.5E+02 0.0051 31.2 9.5 81 763-872 114-194 (305)
200 3lid_A Putative sensory BOX/gg 28.8 1.5E+02 0.0052 30.8 8.8 137 613-779 62-205 (295)
201 2hl0_A Threonyl-tRNA synthetas 25.3 69 0.0024 29.5 4.4 28 230-257 52-82 (143)
202 3s7o_A Bacteriophytochrome; bi 25.1 39 0.0013 36.3 3.2 45 631-677 55-100 (343)
203 2hje_A Autoinducer 2 sensor ki 24.6 4.1E+02 0.014 26.3 10.0 90 624-740 58-148 (221)
204 3lid_A Putative sensory BOX/gg 22.5 69 0.0023 33.5 4.6 107 746-872 64-175 (295)
205 1l1o_C Replication protein A 7 20.3 2.5E+02 0.0086 26.9 7.8 29 631-659 83-113 (181)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=4.2e-115 Score=1051.08 Aligned_cols=614 Identities=28% Similarity=0.430 Sum_probs=540.1
Q ss_pred ccccccccCCCCCCCChhhHHHhhhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccc
Q 002191 61 SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDAR 140 (955)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~ 140 (955)
.+|.++|.++| ||+||+|||||||||+|+++++|++||+|++++||.++ ++|+++.
T Consensus 14 ~~dl~~C~~Ep---------------Ih~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~---------~lg~~l~ 69 (635)
T 4eho_A 14 TADLSNCEREE---------------IHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS---------VLGVPLA 69 (635)
T ss_dssp CCCTTTTTSCB---------------CSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC---------CSSCBSS
T ss_pred CCcCccccccc---------------ccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh---------hhCCCHH
Confidence 57899999888 99999999999999999999999999999999999744 8899999
Q ss_pred cccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEee-CCEEEEEeccCCCCCCcchhhhHHHHHHHHHHH
Q 002191 141 TLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRI-DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSA 219 (955)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hr~-~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~ 219 (955)
+++++.....+.... ......|..+++.....++.|++++||. ++.+|+||||..++.. . +.++..+
T Consensus 70 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~~---~------~~~~~~~ 137 (635)
T 4eho_A 70 EIDGDLLIKILPHLD---PTAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPID---L------SGTLAPA 137 (635)
T ss_dssp SSSSSHHHHHGGGCC---SSSCCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCCC---C------CTTSSSH
T ss_pred HHcchHHHHHHhhhh---hhccCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCchh---H------HHHHHHH
Confidence 999876655554321 1222356776664456778999999995 5789999999865422 1 1234578
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCE
Q 002191 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (955)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 299 (955)
++||++ ++|+++||+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|++|++
T Consensus 138 ~~~i~~--s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 215 (635)
T 4eho_A 138 LERIRT--AGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRV 215 (635)
T ss_dssp HHHHHH--CCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCE
T ss_pred HHHHHh--hCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCe
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCC
Q 002191 300 RMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (955)
Q Consensus 300 r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~ 377 (955)
|+|+|++++|+||+| ++.+++|+|||+|+||++||||+|||+||||+|||+|||++++ +|||||+||||+||+|
T Consensus 216 r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~~----~LWGLl~~h~~~pr~~ 291 (635)
T 4eho_A 216 RVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGG----KLWGLVACHHYLPRFI 291 (635)
T ss_dssp EEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEESSCCCC
T ss_pred EEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEcc----eeeeeeeeecCCCCcC
Confidence 999999999999987 4678999999999999999999999999999999999999999 9999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CcccccCCchhhhhccCCeEEEEECCeEE
Q 002191 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA--PFSIVTQSPSIMDLVKCDGAALYYGGRCW 455 (955)
Q Consensus 378 ~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~g~a~~~~~~~~ 455 (955)
++++|.+|++|++++|++|+++...+.+..++++.+++..+++++.+.. +.++..+.++++++++|||+++|++++++
T Consensus 292 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~ 371 (635)
T 4eho_A 292 HFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIR 371 (635)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEE
Confidence 9999999999999999999988777777777778888888888877643 46788899999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHhccCCCceeecccccccCCCCccccccccceEEEEEecC--CCeEEEeecccceEEeccCC
Q 002191 456 LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITS--KDFLFWFRSHTAKEVKWGGA 533 (955)
Q Consensus 456 ~~G~~p~~~~~~~l~~wl~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~--~~~l~wfR~e~~~~v~W~G~ 533 (955)
++|.+|++.++.+++.|+...+. ..+|+|++|.. .||++..+++.+|||++++|+. ++|++|||+++.++++|+|+
T Consensus 372 ~~G~~P~~~~i~~l~~wl~~~~~-~~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~ 449 (635)
T 4eho_A 372 TIGDVPSTQDVREIAGWLDRQPR-AAVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGD 449 (635)
T ss_dssp EEESCCCHHHHHHHHHHHTTSCC-CSSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSC
T ss_pred EEeCCCCHHHHHHHHHHHHhcCC-CcEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccC
Confidence 99999999999999999987754 57899999985 5999999999999999999986 58999999999999999999
Q ss_pred CCCCCcC-CCCCcccCCchHHHHHHHhcccccCCccchHHHHHHHHHHHHHHHHHHHHhhccchhcccccccccccchHH
Q 002191 534 KHHPEHK-DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612 (955)
Q Consensus 534 p~~~~~~-~~~~~l~PR~SF~~w~e~v~g~s~pW~~~el~~~~~L~~~l~~~l~~~~~~~~~~~~~~~rl~~~l~~~~~e 612 (955)
|+++... +++.+|+||+||+.|.+++++++.||...++.++..++..+......... +....
T Consensus 450 p~~~~~~~~~~~~l~PR~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r~-----------------~~~~~ 512 (635)
T 4eho_A 450 PKKPFTMGDTPADLSPRRSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQFRA-----------------VRTLI 512 (635)
T ss_dssp CSCCCCSCCSGGGCSHHHHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred CCCccccCCCcceecceeeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHHhH-----------------HHHHH
Confidence 9999764 45779999999999999999999999999999999997665554433321 01122
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceE
Q 002191 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (955)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 692 (955)
+++..+++.+++++++++++++|.+|+|++||+++++++||+.++++|++.. ...++++.+.+...+..+..++. +..
T Consensus 513 a~e~~~~~~~lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l-~~~~~~~~~~~~~i~~~l~~g~~-~~~ 590 (635)
T 4eho_A 513 AREQVPQASSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDL-AGFFVESNDFLRNVAELIDHGRG-WRG 590 (635)
T ss_dssp HHHTSSSHHHHHHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGG-TTSSSSCTHHHHHHHHHHHHCCC-BCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchh-hccCCCCHHHHHHHHHHHHcCCc-EEE
Confidence 3333346788899999999999999999999999999999999999999987 78888888888887777766654 455
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHH
Q 002191 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741 (955)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae 741 (955)
|+++ .++||+.+|+.++.+|++|.+|+++|++++++|||+||++|
T Consensus 591 E~~~----~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 591 EVLL----RGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCEE----CCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EEEE----EccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 6666 68999999999999999999999999999999999999764
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=9.7e-111 Score=963.69 Aligned_cols=488 Identities=32% Similarity=0.575 Sum_probs=435.2
Q ss_pred hHHHh-hhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHhc
Q 002191 79 QITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157 (955)
Q Consensus 79 ~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 157 (955)
.++.| .+|||+||+|||||||||+|+++++|++||+|++++||.++ ..++|+++.++|++.+.+.+++++..
T Consensus 11 dl~~CdrEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~-------~~llG~~l~~ll~~~~~~~l~~~l~~ 83 (520)
T 3zq5_A 11 SLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSP-------EDLLGRTLGEVFDSFQIDPIQSRLTA 83 (520)
T ss_dssp HHHHHHTCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCH-------HHHTTSBHHHHCEESSCCCCSSCCCH
T ss_pred CccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcCh-------HHHcCCCHHHHcCHHHHHHHHHHhcc
Confidence 34444 44499999999999999999999999999999999999988 57999999999998888777765544
Q ss_pred ccccccCcceeeccCCCCCc-ceEEEEEee-CCEEEEEeccCCCCCCcchhhhHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 002191 158 REISLLNPILVHSNSRSIEK-PFYAILHRI-DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLC 235 (955)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~-~~~~~~hr~-~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (955)
......+|+.+++...++++ .|++++||+ ++++||||||..+.++. +...+++++.+++.||++ ++|+++||
T Consensus 84 ~~~~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--sl~l~~il 157 (520)
T 3zq5_A 84 GQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--QANLRDFY 157 (520)
T ss_dssp HHHHHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred cccccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--cCCHHHHH
Confidence 44445678887753334566 899999999 99999999999654421 123568899999999999 88999999
Q ss_pred HHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEeecCCCCCccccc-
Q 002191 236 DTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ- 314 (955)
Q Consensus 236 ~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~~~l~~- 314 (955)
+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+|++|+|+|++++|+||+|
T Consensus 158 ~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~pv~l~~~ 237 (520)
T 3zq5_A 158 DVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPA 237 (520)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCCCEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHHHHHHHH
Q 002191 315 -SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFS 393 (955)
Q Consensus 315 -~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~~l~~~~~ 393 (955)
++.++.|+||++|+||++||||++||+||||+|||+|||+++| +|||||+||||+||+|++++|.+|+++++++|
T Consensus 238 ~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~~~er~~~e~la~~ls 313 (520)
T 3zq5_A 238 VNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDG----HLWGLIACHHQTPKVIPFELRKACEFFGRVVF 313 (520)
T ss_dssp SCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHH
T ss_pred cccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEECC----EEEEEEEEecCCCcCCCHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccC-CcccccCCchhhhhccCCeEEEEECCeEEEecCCCCHHHHHHHHH
Q 002191 394 LQLYMELQVAMQLAEKNILRTQ-VLLCDMLLRDA-PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAW 471 (955)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~g~a~~~~~~~~~~G~~p~~~~~~~l~~ 471 (955)
++|+++...+....+.+..+.+ ++++.|...++ +.++..+.+++++|++|||+++|++|+++++|.+|+++++++|++
T Consensus 314 iai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~~~G~~P~~~~i~~l~~ 393 (520)
T 3zq5_A 314 SNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQ 393 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEEEcCCCCCHHHHHHHHH
Confidence 9999876666555555555544 44466655544 577888899999999999999999999999999999999999999
Q ss_pred HHHhccCCCceeecccccccCCCCccccccccceEEEEEecCCCeEEEeecccceEEeccCCCCCCCc--CCCCC-cccC
Q 002191 472 WLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH--KDNGG-KMHP 548 (955)
Q Consensus 472 wl~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~~~~l~wfR~e~~~~v~W~G~p~~~~~--~~~~~-~l~P 548 (955)
||...+.+ ++|+||+|.+ .||++..+++.+||||+++|+.++|++|||+|+.++|+|||+|+|++. .++|. +|+|
T Consensus 394 wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~g~~~l~P 471 (520)
T 3zq5_A 394 WLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHP 471 (520)
T ss_dssp HHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGGGCSEEEEETTEEEEEC
T ss_pred HHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCCCcCCcCCCCCCccccc
Confidence 99988765 6999999998 699999999999999999999999999999999999999999999976 33675 8999
Q ss_pred CchHHHHHHHhcccccCCccchHHHHHHHHHHHHHHH
Q 002191 549 RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585 (955)
Q Consensus 549 R~SF~~w~e~v~g~s~pW~~~el~~~~~L~~~l~~~l 585 (955)
|+||+.|+|+|+++|.||+..|++++..++..+.+.+
T Consensus 472 R~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vv 508 (520)
T 3zq5_A 472 RQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLI 508 (520)
T ss_dssp CCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999966554443
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=3.9e-108 Score=940.67 Aligned_cols=476 Identities=28% Similarity=0.456 Sum_probs=427.8
Q ss_pred CCCccccccccCCCCCCCChhhHHHhhhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCC
Q 002191 58 SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGI 137 (955)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~ 137 (955)
|...+|.++|.++| ||+||+|||||||||+|+ +++|++||+|++++||.++ ++|+
T Consensus 3 ~~~~~dl~~C~~EP---------------Ih~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~---------~lG~ 57 (505)
T 3nhq_A 3 SITPVTLANCEDEP---------------IHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA---------SPGS 57 (505)
T ss_dssp --CCCCTTTGGGCC---------------TTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC---------CTTC
T ss_pred CCCcCCcccccccc---------------ccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc---------ccCC
Confidence 34568899999888 999999999999999999 8999999999999999865 8999
Q ss_pred cccc-ccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHH
Q 002191 138 DART-LFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLA 216 (955)
Q Consensus 138 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~ 216 (955)
++.+ +|++.+.+.+++++..... ..+|+.++ .++++|++++||+++++|+||||..+.+.. ..+.++++
T Consensus 58 ~l~~~ll~~~~~~~l~~~l~~~~~-~~~p~~~~----~~~~~f~~~~Hr~~~~lilElEp~~~~~~~-----~~~~~~ll 127 (505)
T 3nhq_A 58 YLTQEQVGPEVLRMLEEGLTGNGP-WSNSVETR----IGEHLFDVIGHSYKEVFYLEFEIRTADTLS-----ITSFTLNA 127 (505)
T ss_dssp BCCHHHHHHHHHHHHHHHHSCSSC-CCCEEEEC----SSSSCEEEEEEEETTEEEEEEEECCSCCCC-----SHHHHHHH
T ss_pred chhhhhCCHHHHHHHHHHhhcccc-cCCcEEEe----cCCceEEEEEEEECCEEEEEEEEcCCcccc-----hHHHHHHH
Confidence 9999 9999999999988865544 45777764 467899999999999999999998654321 23678999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHh
Q 002191 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296 (955)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~ 296 (955)
..++++|++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+
T Consensus 128 ~~i~~~Ir~--sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~ 205 (505)
T 3nhq_A 128 QRIIAQVQL--HNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQ 205 (505)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHc
Confidence 999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCcccccc--cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCC
Q 002191 297 NRVRMICDCHAIPVMVIQS--KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374 (955)
Q Consensus 297 ~~~r~i~d~~~~~~~l~~~--~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~p 374 (955)
|++|+|+|++++|+|++|. +.++.|+||++|+|||+||||++||+||||+|||+|||+++| +|||||+||||+|
T Consensus 206 ~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~p 281 (505)
T 3nhq_A 206 NPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGG----KLWGLFSCHHMSP 281 (505)
T ss_dssp CSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECSS----SEEEEEEEEESSC
T ss_pred CCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEECC----EEEEEEEEecCCC
Confidence 9999999999999999984 567899999999999999999999999999999999999999 9999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CcccccCCchhhhhccCCeEEEEECC
Q 002191 375 RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA--PFSIVTQSPSIMDLVKCDGAALYYGG 452 (955)
Q Consensus 375 r~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~g~a~~~~~ 452 (955)
|+|++++|.+|+++++++|++|+++...+.+..++++.+.+..++.++.+.. +.++.++.++++++++|||+++|++|
T Consensus 282 R~w~~~er~~~e~la~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 282 KLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999988777777777777788888888776543 46788889999999999999999999
Q ss_pred eEEEecCCCCHHHHHHHHHHHHhccCCCceeecccccccCCCCccc---cccccceEEEEEecC--CCeEEEeecccceE
Q 002191 453 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL---LGQAVCGMATARITS--KDFLFWFRSHTAKE 527 (955)
Q Consensus 453 ~~~~~G~~p~~~~~~~l~~wl~~~~~~~~~~~t~~l~~~~~p~~~~---~~~~~~g~l~~~i~~--~~~l~wfR~e~~~~ 527 (955)
+++++|.+|+.+++++|++||...+.+ +|+|| .||++.. +++.+||||+++|+. ++|++|||+|+.++
T Consensus 362 ~~~~~G~~P~~~~i~~l~~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~ 434 (505)
T 3nhq_A 362 RTLSIRGDFERQAGNVLQRLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHR 434 (505)
T ss_dssp EEEEESSCCHHHHHHHHHHHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCS
T ss_pred eEEecCCCCCHHHHHHHHHHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceE
Confidence 999999999999999999999988765 99999 4999988 889999999999986 79999999999999
Q ss_pred EeccCCCCCCCc-CCCCCcccCCchHHHHHHHhcccccCCccchHHHHHHHHHHH
Q 002191 528 VKWGGAKHHPEH-KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVM 581 (955)
Q Consensus 528 v~W~G~p~~~~~-~~~~~~l~PR~SF~~w~e~v~g~s~pW~~~el~~~~~L~~~l 581 (955)
|+|||+|+|++. .++|.+|+||+||+.|+|+|+|+|.||+..|++++..++..+
T Consensus 435 v~WaG~P~k~~~~~~~~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l 489 (505)
T 3nhq_A 435 IRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489 (505)
T ss_dssp EEEEESCCCCCCCCTTCGGGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcCCCCCCCCccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHH
Confidence 999999999976 466889999999999999999999999999999999995433
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.8e-80 Score=669.32 Aligned_cols=306 Identities=34% Similarity=0.555 Sum_probs=277.9
Q ss_pred CccccccccCCCCCCCChhhHHHhhhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCcc
Q 002191 60 KSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDA 139 (955)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~ 139 (955)
..+|.++|.++| ||+||+|||||||||+| ++++|+++|+|++++||.++ ..++|+++
T Consensus 8 ~~~~l~~C~rEp---------------Ih~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~-------~~~lG~~l 64 (327)
T 4e04_A 8 RQPDLSTCDDEP---------------IHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAI-------GALIGRSA 64 (327)
T ss_dssp -----CCGGGCC---------------TTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCH-------HHHTTCBH
T ss_pred CCCCcccccccc---------------ccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCCh-------HhhcCCCH
Confidence 467888888888 99999999999999999 89999999999999999988 57999999
Q ss_pred ccccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHHHHH
Q 002191 140 RTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSA 219 (955)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~ 219 (955)
+++|++...+.+++++........+|+.+++....+++.|++++||+++++|+||||....... ....++++.++
T Consensus 65 ~~ll~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~~~-----~~~~~~ll~~i 139 (327)
T 4e04_A 65 ADVFDSETHNRLTIALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDVRY-----PQAFFRSVRSA 139 (327)
T ss_dssp HHHBCHHHHHHHHHHHHSCSCCSEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCSSC-----CCCHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHhhccccccCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCcccc-----hHHHHHHHHHH
Confidence 9999999999999988766655578888875334567899999999999999999998432211 12467899999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCE
Q 002191 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (955)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 299 (955)
+.||++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+|++
T Consensus 140 ~~rIr~--sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~v 217 (327)
T 4e04_A 140 IRRLQA--AETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPV 217 (327)
T ss_dssp HHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCE
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCE
Confidence 999999 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCC
Q 002191 300 RMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (955)
Q Consensus 300 r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~ 377 (955)
|+|+|+++.|+||+| ++.+++|+||++|+||++||||++||+||||+|||+|||+++| +|||||+||||+||+|
T Consensus 218 r~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w 293 (327)
T 4e04_A 218 RIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGE----RLWGLIACHHRKPNYV 293 (327)
T ss_dssp EEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEETT----EEEEEEEEEESSCCCC
T ss_pred EEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEECC----EEEEEEEEecCCCcCC
Confidence 999999999999998 4668999999999999999999999999999999999999999 9999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 002191 378 PFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 378 ~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
++++|.+|++|++++|++|+++
T Consensus 294 ~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 294 DLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=2.2e-80 Score=669.04 Aligned_cols=304 Identities=29% Similarity=0.471 Sum_probs=278.6
Q ss_pred cCCCccccccccCCCCCCCChhhHHHhhhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccC
Q 002191 57 ASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIG 136 (955)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g 136 (955)
.++..+|.++|.++| ||+||+|||||||||+|+++++|++||+|++++||.++ ..++|
T Consensus 28 ~~~~~~dl~~Cd~EP---------------Ih~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~-------~~llG 85 (343)
T 3s7o_A 28 LGGPEITTENCEREP---------------IHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEP-------TVLRG 85 (343)
T ss_dssp GTCCCCCTTTGGGCC---------------TTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCH-------HHHTT
T ss_pred cCCCCcCcccccccc---------------ccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcCh-------HHHcC
Confidence 455678888888888 99999999999999999999999999999999999988 57999
Q ss_pred CccccccCCchHHHHHHHHhcccccccC---cceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHH
Q 002191 137 IDARTLFTPPSGASLAKAAASREISLLN---PILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213 (955)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~ 213 (955)
+++.++|++ +.+.+++++........+ |+.+. +++.|++++||+++++|+||||..+.+ .+++
T Consensus 86 ~~l~~ll~~-~~~~l~~~l~~~~~~~~~~~~p~~~~-----~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~ 151 (343)
T 3s7o_A 86 QTLAALLPE-QWPALQAALPPGCPDALQYRATLDWP-----AAGHLSLTVHRVGELLILEFEPTEAWD--------STGP 151 (343)
T ss_dssp CBHHHHSTT-THHHHHHHSCTTCCTTCCEEEEECCS-----SSSEEEEEEEEETTEEEEEEEEEC------------CHH
T ss_pred CCHHHHHhH-HHHHHHHHhccccccccccCCcEEEc-----CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHH
Confidence 999999999 999998887655544455 66552 467899999999999999999986533 1468
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHH
Q 002191 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (955)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~l 293 (955)
+++.+++.||++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++
T Consensus 152 ~ll~~i~~rIr~--sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~l 229 (343)
T 3s7o_A 152 HALRNAMFALES--APNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARAL 229 (343)
T ss_dssp HHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHH
Confidence 899999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEEeecCCCCCcccccc--cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002191 294 FKQNRVRMICDCHAIPVMVIQS--KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (955)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~--~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh 371 (955)
|++|++|+|+|+++.|++|+|. +.++.|+||++|+||++||||++||+||||+|||+|||++++ +|||||+|||
T Consensus 230 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~~----~LWGLL~~Hh 305 (343)
T 3s7o_A 230 YTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGG----QLWGLIACHH 305 (343)
T ss_dssp HHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEECC----EEEEEEEEEc
Confidence 9999999999999999999984 567999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002191 372 TSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402 (955)
Q Consensus 372 ~~pr~~~~~~r~~~~~l~~~~~~~l~~~~~~ 402 (955)
++||+|++++|.+|++|++++|++|+++..+
T Consensus 306 ~~pR~w~~~er~~~e~la~~lsiaI~~~~~~ 336 (343)
T 3s7o_A 306 QTPYVLPPDLRTTLESLGRLLSLQVQVKEAL 336 (343)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999876544
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=3.9e-77 Score=652.46 Aligned_cols=306 Identities=31% Similarity=0.553 Sum_probs=277.7
Q ss_pred ccccccccCCCCCCCChhhHHHhhhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccc
Q 002191 61 SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDAR 140 (955)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~ 140 (955)
.+|.++|.++| ||+||+|||||||||+|+++++|++||+|++++||+++ ++++|+++.
T Consensus 22 ~~~l~~C~~Ep---------------Ih~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~-------~~llG~~l~ 79 (337)
T 2ool_A 22 ALDLTECDREP---------------IHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPP-------ASLLNVPIA 79 (337)
T ss_dssp ----CCGGGSC---------------TTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCG-------GGGTTCBGG
T ss_pred ccChhhhccCc---------------CcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCH-------HHHcCCCHH
Confidence 46777788777 99999999999999999989999999999999999988 579999999
Q ss_pred cccCCchHHHHHHHHhcccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHHHHHH
Q 002191 141 TLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAI 220 (955)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~ 220 (955)
++|++...+.+++.+........+|+.+.+...++++.|++++||+++++|+||||....+. ..+.++++.+++
T Consensus 80 ~ll~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~ 153 (337)
T 2ool_A 80 HYLTAASAARLTHALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAI 153 (337)
T ss_dssp GGBCHHHHHHHHHHHCC----CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHhcCCccccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHH
Confidence 99999999999998876666666888877632224678999999999999999999965432 346789999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEE
Q 002191 221 SRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300 (955)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r 300 (955)
+||++ +.|+++||+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+|++|
T Consensus 154 ~~Ir~--sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr 231 (337)
T 2ool_A 154 RRLQT--AADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVR 231 (337)
T ss_dssp HHHHT--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEE
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEE
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcccccc--cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCC
Q 002191 301 MICDCHAIPVMVIQS--KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIP 378 (955)
Q Consensus 301 ~i~d~~~~~~~l~~~--~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~ 378 (955)
+|+|+++.|+||+|. +.++.||||++|+||++||||++||+||||+|+|+|||+++| +|||||+||||+||+|+
T Consensus 232 ~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~ 307 (337)
T 2ool_A 232 IIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDN----RLWGMISCHNLTPRFVS 307 (337)
T ss_dssp EESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEESSCCCCC
T ss_pred EEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEECC----eeEEEEEEecCCCCCCC
Confidence 999999999999984 668999999999999999999999999999999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002191 379 FPLRYACEFLVQAFSLQLYMEL 400 (955)
Q Consensus 379 ~~~r~~~~~l~~~~~~~l~~~~ 400 (955)
+++|.+|++|++++|++|+++.
T Consensus 308 ~~e~~~~e~la~~l~iai~q~e 329 (337)
T 2ool_A 308 YEVRQACELIAQVLTWQIGVLE 329 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997543
No 7
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=3.7e-35 Score=294.56 Aligned_cols=152 Identities=24% Similarity=0.283 Sum_probs=140.4
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCE
Q 002191 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (955)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 299 (955)
..+|++ +.|++++++++|++|++++|+|||+||+|++||+|+|++|++.++++|++|.+||++|||++++++|.+|++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 467888 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCC-CCCCC
Q 002191 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS-PRYIP 378 (955)
Q Consensus 300 r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~-pr~~~ 378 (955)
++|+|++..+. +|||.+||++|||+|+|+|||+++| +|||+|+||||. ||.|+
T Consensus 81 ~~I~Dv~~~~~----------------------~~~~~~~l~~~~v~S~L~vPi~~~~----~l~GlL~~~~~~~~r~w~ 134 (171)
T 4glq_A 81 QATTDIFKAGL----------------------TECHLNQLRPLKVRANLVVPMVIDD----QLFGLLIAHQASEPRQWQ 134 (171)
T ss_dssp EEESCGGGTTC----------------------CHHHHHHHGGGTEEEEEEEEEEETT----EEEEEEEEEEESSCCCCC
T ss_pred EEEcCcCcCCC----------------------CHHHHHHHHhcCCcEEEEEEEEECC----EEEEEEEEEeCCCCCCCC
Confidence 99999987543 8999999999999999999999999 999999999985 99999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 002191 379 FPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 379 ~~~r~~~~~l~~~~~~~l~~~ 399 (955)
..++.+++.+|.++++.|+++
T Consensus 135 ~~ei~ll~~lA~ql~iAi~qa 155 (171)
T 4glq_A 135 EIEIDQFSELASTGSLVLERL 155 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888654
No 8
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.95 E-value=3.2e-28 Score=244.84 Aligned_cols=165 Identities=35% Similarity=0.584 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC-CCCCccCCCCCCCCchHHHHHHHHhCCEEEeecCCCCC
Q 002191 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309 (955)
Q Consensus 231 ~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~-~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~ 309 (955)
++++++++++++++++|+|||+||+|++|++|++++|++.+ ++++++|.+||++|+|.+++.+|.++++|+|.|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 46899999999999999999999999999999999999987 47899999999999999999999999999999999998
Q ss_pred ccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHH
Q 002191 310 VMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387 (955)
Q Consensus 310 ~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~~ 387 (955)
+.++| ...+++|+.++.+..++.+|||.+|++++|++|.|+|||+.+| ++||+|.||||.||.|+.+++.+++.
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~----~l~G~l~~~~~~~~~~~~~e~~~l~~ 156 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLLVSHHAEPRPYSQEELQVVQL 156 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSS----CCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECC----EEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 88875 3668999999999999999999999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002191 388 LVQAFSLQLYME 399 (955)
Q Consensus 388 l~~~~~~~l~~~ 399 (955)
++.++++.|+++
T Consensus 157 la~~~a~ai~~a 168 (172)
T 2k2n_A 157 LADQVSIAIAQA 168 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888643
No 9
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.95 E-value=8.9e-26 Score=237.63 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=183.8
Q ss_pred cEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCcEEE
Q 002191 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709 (955)
Q Consensus 630 ~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~~~~ 709 (955)
.|+++|.+|+|+++|+++++++||+.++++|+++. .+.++.........+...+..+..+..++.. .++||..+|
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~dG~~~~ 75 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHR-IVNSGYHGKAYIRDMWRTISRGNIWQGEFCN----RRKDGTRYW 75 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGG-GGCCSCSCHHHHHHHHHHHTTTCCEEEEEEE----ECSSSCEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCeEEEEEEE----EcCCCCEEe
Confidence 47889999999999999999999999999999986 6655544444434444555556666666666 789999999
Q ss_pred EEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCCh
Q 002191 710 ILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789 (955)
Q Consensus 710 v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~ 789 (955)
+.++..|++|.+|++.+++++.+|||++|+++++|+. ++.++++++. +|+++|.+|+|+++|+++++++||+.
T Consensus 76 ~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~----~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~ 148 (227)
T 3ewk_A 76 VDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR----LKQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAE 148 (227)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH----HHHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCT
T ss_pred eeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH----HHHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCH
Confidence 9999999999999999999999999999999999865 4557777764 59999999999999999999999999
Q ss_pred hhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCCc------EEEEEEEEeeeeCCCCCEEE
Q 002191 790 HEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQ------FVEVALTASRRTDAEGKVIG 863 (955)
Q Consensus 790 eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG~------~~~v~~~~~pi~d~~G~v~g 863 (955)
+|++|+++.. +.+++....+...+.+.+..+..+..++..++++|. .+|+.+++.|++|.+|.+++
T Consensus 149 ~e~~g~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~ 220 (227)
T 3ewk_A 149 GELLGQSPSI--------LDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVG 220 (227)
T ss_dssp HHHHSSCGGG--------GBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEE
T ss_pred HHHcCCChhh--------ccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEE
Confidence 9999998553 222333344555566666666688999999999997 89999999999999999999
Q ss_pred EEEEEec
Q 002191 864 CFCFMQI 870 (955)
Q Consensus 864 ~v~i~~D 870 (955)
++++.+|
T Consensus 221 ~v~i~~D 227 (227)
T 3ewk_A 221 YVQIQHD 227 (227)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999987
No 10
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.94 E-value=5.9e-27 Score=243.19 Aligned_cols=183 Identities=32% Similarity=0.534 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC-CCCCccCCCCCCCCchHH
Q 002191 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQA 289 (955)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~-~~~s~lg~~~p~~dip~~ 289 (955)
+..+++.++..+|.+ +.|++++++++++++++++|+|||+||.|++|++|++++|++.+ ++++++|.+||.+|+|.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 345667788888888 78999999999999999999999999999999999999999987 588999999999999999
Q ss_pred HHHHHHhCCEEEeecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEE
Q 002191 290 ARFLFKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLV 367 (955)
Q Consensus 290 ~r~ly~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll 367 (955)
++.+|..+++|+|.|+...+++++| ...+++|++++....++.+|||.+|++++|++|.|+|||+.+| ++||+|
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~----~l~GvL 166 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLL 166 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEE
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECC----EeEEEE
Confidence 9999999999999999998888765 3567899999999999999999999999999999999999998 999999
Q ss_pred EeecCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 368 VCHHTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 368 ~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
.+|+|.||.|+.+++.+++.++.++++.|+.+
T Consensus 167 ~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a 198 (208)
T 2lb5_A 167 VSHHAEPRPYSQEELQVVQLLADQVSIAIAQA 198 (208)
T ss_dssp EEEESCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888643
No 11
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=196.34 Aligned_cols=238 Identities=10% Similarity=0.033 Sum_probs=173.5
Q ss_pred HHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCc----------
Q 002191 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED---------- 689 (955)
Q Consensus 620 l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~---------- 689 (955)
...++++++..++++|.+|+|+|+|+.+..++||++++++|+++. +++||++.+.+...+.........
T Consensus 88 ~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~-~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (361)
T 4f3l_A 88 TQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIF-NFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKN 166 (361)
T ss_dssp HHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGG-GGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGG
T ss_pred HHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHH-HhcCHHHHHHHHHHhccCCCCCCCCCcccccccC
Confidence 456789999999999999999999999999999999999999999 999999999888877654321111
Q ss_pred -ceEEEEEEeeee--ccCCcEEEEEEEEEEee---------------------cCCCCEEEEEEEEecchHhHHHHHHHH
Q 002191 690 -KNVELKLRKFEL--QKQHSVVYILVNACTSR---------------------DYKNNVKGVCFVGQDITHEKVLMDKFI 745 (955)
Q Consensus 690 -~~~e~~~~~~~~--~~dG~~~~v~v~~~pi~---------------------d~~g~v~gvv~v~~DITerk~ae~~L~ 745 (955)
..+.+++..... .......++...+.... ...+....++++.++++.+...+..
T Consensus 167 ~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~-- 244 (361)
T 4f3l_A 167 QLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMC-- 244 (361)
T ss_dssp EEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEEC--
T ss_pred ceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccccc--
Confidence 122222211000 01233444443332221 1112234556667777654322110
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhh
Q 002191 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGI 825 (955)
Q Consensus 746 ~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 825 (955)
.++... ...++..|.+|+++++|+++..++||+++|++|+.+. .+.||+|...+...+.+.+
T Consensus 245 --------~i~~~~--~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~--------~~iHpdD~~~~~~~~~~~l 306 (361)
T 4f3l_A 245 --------TVEEPN--EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY--------DYYHVDDLENLAKCHEHLM 306 (361)
T ss_dssp --------SCSSSC--CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGG--------GGBCHHHHHHHHHHHHHHH
T ss_pred --------cccCCc--ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHH--------HeECHHHHHHHHHHHHHHH
Confidence 011111 1236778999999999999999999999999998754 3778999999888888888
Q ss_pred cCCCcceeeEEEEcCCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeccCcccHHH
Q 002191 826 TGQGTENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQPA 878 (955)
Q Consensus 826 ~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~~e 878 (955)
.++.....++++++++|.++|+..++.+++|. +|++.+++|+.+|||+++..+
T Consensus 307 ~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 307 QYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred hCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 77777888999999999999999999999998 899999999999999876543
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.77 E-value=4e-18 Score=193.39 Aligned_cols=234 Identities=11% Similarity=0.078 Sum_probs=167.0
Q ss_pred HHHHHhcCccEEEEcCC-CcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHc----------C---
Q 002191 621 VRLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL----------G--- 686 (955)
Q Consensus 621 ~~lie~~~~~I~~~D~d-g~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~----------~--- 686 (955)
..++++++..+++++.+ |+|+|+|+++..++||+.+|++|+++. +++||++.+.+.+.+..... .
T Consensus 89 ~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~-~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~ 167 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLF-DYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLP 167 (387)
T ss_dssp HHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHSCC----------------
T ss_pred HHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHH-HhcCCCCHHHHHHHhcccccCccccccCcccCCc
Confidence 45788899999999987 999999999999999999999999999 99999999888766632210 0
Q ss_pred --------------CCcceEEEEEEeeeec-----------------cCCcEEEEEEEEEEeec---------------C
Q 002191 687 --------------EEDKNVELKLRKFELQ-----------------KQHSVVYILVNACTSRD---------------Y 720 (955)
Q Consensus 687 --------------~~~~~~e~~~~~~~~~-----------------~dG~~~~v~v~~~pi~d---------------~ 720 (955)
+....+.+++++.... ...+..++.+++..... .
T Consensus 168 ~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~ 247 (387)
T 4f3l_B 168 VKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNE 247 (387)
T ss_dssp ----------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------------
T ss_pred cCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccC
Confidence 1122444454432100 23444555554432211 0
Q ss_pred CCCEEEEEEEEecchHhHHH--HHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCcc
Q 002191 721 KNNVKGVCFVGQDITHEKVL--MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLP 798 (955)
Q Consensus 721 ~g~v~gvv~v~~DITerk~a--e~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~ 798 (955)
.+....++++.++++..... ..+ +..+.. +.++..|.+|+++|+|+++..++||+++|++|+.+.
T Consensus 248 ~~~~~~lvai~r~~~~~~~~~~~~e----------i~~~~~---~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~ 314 (387)
T 4f3l_B 248 GCNLSCLVAIGRLHSHMVPQPANGE----------IRVKSM---EYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY 314 (387)
T ss_dssp --CCCEEEEEEEECCCSCCSCCCSS----------SCBCCC---EEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG
T ss_pred CCcceEEEEEEecccCCCCCCcccc----------cccCCc---eEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH
Confidence 11234566777775431100 000 111122 247778999999999999999999999999999755
Q ss_pred chhcccchhccChhhHHHHHHHHHhhhcCC-CcceeeEEEEcCCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeccCcccH
Q 002191 799 REIFGNFCRMKGQDMLTKFMILLYQGITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQ 876 (955)
Q Consensus 799 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~-~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~ 876 (955)
.+.||+|...+...+.+.+.++ .....+++++++||.++|+..++.+++|. +|++.+++|+.+|||+||+
T Consensus 315 --------~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 315 --------EYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp --------GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred --------HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 3778999999999898888654 44678999999999999999999999987 8999999999999999874
No 13
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.71 E-value=1.1e-16 Score=154.53 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCC--CccccccccccHHHHHHHHHHHHcCCC
Q 002191 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK--SLIDEVVHEESQGAVENLICRALLGEE 688 (955)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~--~~~~~l~~~~~~~~~~~~l~~~l~~~~ 688 (955)
++|++++++|+.+++.+++++|.+|.++.+++||+.+.+++||+++++.+. .+. +++||++...+...+..++.++.
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-~~ihpdD~~~~~~~~~~~~~~~~ 80 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHR-ESIHPDDRARVLAALKAHLEHRD 80 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC----CCBCTTTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHH-hhcCHHHHHHHHHHHHHHHhCCC
Confidence 356778888999999999999999999999999999999999999998763 455 78999999999988888888777
Q ss_pred cceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHH
Q 002191 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753 (955)
Q Consensus 689 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~ 753 (955)
.+..++++ .+++|..+|+...+.|++|.+|.+.+++|+++|||++|++|++|++++++|+.
T Consensus 81 ~~~~e~r~----~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~ 141 (142)
T 3mr0_A 81 TYDVEYRV----RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
T ss_dssp CEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEE----ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhc
Confidence 77777777 78999999999999999999999999999999999999999999999999875
No 14
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.66 E-value=4.8e-17 Score=182.14 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHh
Q 002191 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (955)
Q Consensus 744 L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (955)
+++++..++.++++++. +|+++|.+|+|++||+++++++||+.++++|+++.+. .++++.. ..+..
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~--------~~~~~~~---~~~~~ 68 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--------PDFEEIG---SVAES 68 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTS--------TTTTHHH---HHHHH
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHC--------cChhHHH---HHHHH
Confidence 44566778889999875 5999999999999999999999999999999986542 2223222 22233
Q ss_pred hhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCE-EEEEEEEeccCcccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002191 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKV-IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQE 902 (955)
Q Consensus 824 ~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v-~g~v~i~~DITerk~~el~lq~~aE~~~~ak~~fla~iSHE 902 (955)
....+..... ....+..+|+.++..|+.+.+|.. .|++++++|||++++.+.++++. +....+.+|++.++||
T Consensus 69 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~--~~~~~~~~~~~~i~He 142 (349)
T 3a0r_A 69 VFENKEPVFL----NFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR--ERLSILGEMTARVAHE 142 (349)
T ss_dssp HHHHCCCCEE----ECCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH--HHHHHHHHHHHHHHHH
T ss_pred HHhcCCceee----cccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333322222 122233468888999999988875 58999999999999887664432 2334677899999999
Q ss_pred hhhHhHhHHHHHHHhccCCC-CHHHHHHHHHHHHHHHHHHHhhcc-cCcccc
Q 002191 903 VKNPLNGIRFVHKLLESSSI-SENQRQYLETSDACERQIMTIIDG-MDLRCI 952 (955)
Q Consensus 903 LRnPL~~I~g~~~LL~~~~l-~~~~~~~l~~i~~~a~rl~~LI~D-Ld~SrI 952 (955)
|||||++|.++.+++..... +++..++++.+..+++++..++++ ++++|.
T Consensus 143 lr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 194 (349)
T 3a0r_A 143 IRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 194 (349)
T ss_dssp HHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999986433 344678999999999999999999 888874
No 15
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.65 E-value=8.3e-16 Score=148.29 Aligned_cols=137 Identities=8% Similarity=0.113 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHH
Q 002191 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILL 821 (955)
Q Consensus 742 ~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l 821 (955)
++|++++++|+.++++++. ++|.+|.++.++++|+++.+++||+.+++.+... .+....||++...+...+
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~------~~~~~ihpdD~~~~~~~~ 72 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEIT------GHRESIHPDDRARVLAAL 72 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---------CCBCTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCHH------HHHhhcCHHHHHHHHHHH
Confidence 4688899999999999874 5999999999999999999999999998866421 133578899999999999
Q ss_pred HhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHhHHHH
Q 002191 822 YQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 887 (955)
Q Consensus 822 ~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~~aE~ 887 (955)
..++.++..+..++++.+++|+++|+...+.|++|.+|.+.+++|+++|||++|++|.++++..++
T Consensus 73 ~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~ 138 (142)
T 3mr0_A 73 KAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
T ss_dssp HHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999999999999999999999999999887765554
No 16
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.64 E-value=8.8e-16 Score=164.23 Aligned_cols=174 Identities=10% Similarity=0.032 Sum_probs=119.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccC
Q 002191 734 ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKG 810 (955)
Q Consensus 734 ITerk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~ 810 (955)
+.....+++++++++.+|+.++++++. +|+++|. +|+|+++|+++++++||+.++++|+.+.. +.+
T Consensus 48 ~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~--------l~~ 116 (258)
T 3p7n_A 48 APGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRF--------LAG 116 (258)
T ss_dssp -------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGG--------GCC
T ss_pred CCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhh--------ccC
Confidence 334445566788889999999999975 5999999 89999999999999999999999998542 233
Q ss_pred hhhHHHHHHHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCccc--HHHHHHHhHHHHH
Q 002191 811 QDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL--QPALEAQGLEDMD 888 (955)
Q Consensus 811 ~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk--~~el~lq~~aE~~ 888 (955)
+++...+...+...+..+..+..++++.+++|..+|+.+++.|++|.+|.+.+++++++|||++| +.+.+++...+..
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l 196 (258)
T 3p7n_A 117 SGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEML 196 (258)
T ss_dssp TTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHH
Confidence 44444455556666666668889999999999999999999999999999999999999999994 4333332211111
Q ss_pred H---HHHHHH---------HHHHHHHhhhHhHhHHHHHHHhc
Q 002191 889 I---YAKIKE---------LAYIRQEVKNPLNGIRFVHKLLE 918 (955)
Q Consensus 889 ~---~ak~~f---------la~iSHELRnPL~~I~g~~~LL~ 918 (955)
. ....+. ...++|++..++..|......+.
T Consensus 197 ~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~ 238 (258)
T 3p7n_A 197 KTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVM 238 (258)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1 111111 35678888888888886555444
No 17
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.61 E-value=5.4e-15 Score=163.26 Aligned_cols=222 Identities=12% Similarity=0.119 Sum_probs=159.0
Q ss_pred cEEEEc-CCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCC--------cceEEEEEEee-
Q 002191 630 PIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE--------DKNVELKLRKF- 699 (955)
Q Consensus 630 ~I~~~D-~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~--------~~~~e~~~~~~- 699 (955)
.+++++ .+|+|+|+|+.+..++||+.++++|+++. +++||++.+.+...+...+.... ...+-.++...
T Consensus 5 F~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~-d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~ 83 (339)
T 3rty_A 5 FCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFI-DFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRY 83 (339)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGG-GGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECC
T ss_pred EEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHH-HhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEecc
Confidence 457778 69999999999999999999999999999 99999999887766653321110 11333332110
Q ss_pred -ee----------ccCCcEEEEEEEEEEeecC---------CCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHH-hc
Q 002191 700 -EL----------QKQHSVVYILVNACTSRDY---------KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQ-SV 758 (955)
Q Consensus 700 -~~----------~~dG~~~~v~v~~~pi~d~---------~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e-~~ 758 (955)
+. ......+|+.....++.++ .|....++.+..+++.......+ ++. ..
T Consensus 84 ~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e----------~~~~~~ 153 (339)
T 3rty_A 84 RGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDE----------ILSQKS 153 (339)
T ss_dssp C-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTB----------BCCSSC
T ss_pred CCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccch----------hhccCC
Confidence 00 1122234444445555444 56667788888899854321111 010 11
Q ss_pred CCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCc-----cee
Q 002191 759 NPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGT-----ENF 833 (955)
Q Consensus 759 ~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~-----~~~ 833 (955)
. +.++..|.+|+++|+|+++..++||+++|++|+.+.+ +.||+|...+...+.+.+..+.. ...
T Consensus 154 ~---~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~--------~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~ 222 (339)
T 3rty_A 154 P---KFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMD--------FYHHEDLSVMKETYETVMKKGQTAGASFCSK 222 (339)
T ss_dssp C---EEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGG--------GBCGGGHHHHHHHHHHHHHHTTSTTCCCBCC
T ss_pred c---eEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHH--------EECHHHHHHHHHHHHHHHHcCCcccccccce
Confidence 1 3477889999999999999999999999999998553 77899999888888888764433 367
Q ss_pred eEEEEcCCCcEEEEEEEEeeeeCCC-CCEEEEEEEEeccCc
Q 002191 834 PFGFFNRQGQFVEVALTASRRTDAE-GKVIGCFCFMQILVP 873 (955)
Q Consensus 834 e~~~~~~dG~~~~v~~~~~pi~d~~-G~v~g~v~i~~DITe 873 (955)
++|++++||.++|+..+.++++|.. +++..++|+-+.|+.
T Consensus 223 ~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~ 263 (339)
T 3rty_A 223 PYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQG 263 (339)
T ss_dssp CEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEC
T ss_pred EEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCC
Confidence 8999999999999999999999865 677778888777765
No 18
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.59 E-value=1.4e-14 Score=137.43 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHHHHhcCccEEEEcCCC---cEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEE
Q 002191 621 VRLIETATAPIFGVDSSG---TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (955)
Q Consensus 621 ~~lie~~~~~I~~~D~dg---~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (955)
+.++++++++|+++|.+| +|+++|+++++++||+.++++|+++. .+.+++........+...+..+.....++..
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 79 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-FLQGKHTDPAEVDNIRTALQNKEPVTVQIQN- 79 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE-
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-hhCCCCCCHHHHHHHHHHHHcCCCeEEEEEE-
Confidence 357899999999999977 99999999999999999999999986 6666654443334444455444555555555
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHH
Q 002191 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAI 754 (955)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i 754 (955)
.++||..+|+.++..|+++.+ +.+++++++|||++|++|++|++++++++.+
T Consensus 80 ---~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 80 ---YKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp ---ECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999765 8889999999999999999999999888754
No 19
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.58 E-value=1.4e-14 Score=134.98 Aligned_cols=117 Identities=14% Similarity=0.047 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC
Q 002191 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG 827 (955)
Q Consensus 748 e~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g 827 (955)
+++|+.++++++. +|+++|.+|+|+++|+++++++||+.++++|+.... +. +++........+...+..
T Consensus 4 ~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~-l~-------~~~~~~~~~~~~~~~~~~ 72 (120)
T 2gj3_A 4 PEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNESI-LS-------NGTTPRLVYQALWGRLAQ 72 (120)
T ss_dssp HHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGG-GC-------CTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHH-cC-------CCCCCHHHHHHHHHHHHc
Confidence 4678899999875 599999999999999999999999999999997543 22 222222233344455555
Q ss_pred CCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCccc
Q 002191 828 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 875 (955)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk 875 (955)
+..+..++.+++++|+.+|+.++..|++|.+|.+.+++++++|||++|
T Consensus 73 ~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 73 KKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred CCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 668888999999999999999999999999999999999999999976
No 20
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.57 E-value=2e-14 Score=133.94 Aligned_cols=117 Identities=14% Similarity=0.032 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEE
Q 002191 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (955)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~ 696 (955)
+++++.++++++++|+++|.+|+|+++|+++++++||+.++++|+++. .+.+++........+...+..+..+..++..
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 82 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNES-ILSNGTTPRLVYQALWGRLAQKKPWSGVLVN 82 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCCEEEEEEE
Confidence 356889999999999999999999999999999999999999999987 7776655444444444455555555555555
Q ss_pred EeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhH
Q 002191 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (955)
Q Consensus 697 ~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk 738 (955)
.++||..+|+.++..|++|.+|.+.+++++++|||++|
T Consensus 83 ----~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 83 ----RRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp ----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred ----EcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 68999999999999999999999999999999999975
No 21
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.57 E-value=4.5e-15 Score=148.10 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCccEEEEcCC---CcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEE
Q 002191 617 ACEMVRLIETATAPIFGVDSS---GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (955)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~d---g~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (955)
.++++.++++++++|+++|.+ |+|+++|+++++++||+.++++|+++. .+++++........+...+..+.....+
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR-FLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc-eeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 456889999999999999999 999999999999999999999999987 7888777666666677776666665666
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHH
Q 002191 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745 (955)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~ 745 (955)
+.. .+++|..+|+.++..|+++.+|.+.+++++++|||++|++|+++.
T Consensus 85 ~~~----~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~ 132 (176)
T 4hia_A 85 LRN----YRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAA 132 (176)
T ss_dssp EEE----ECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHH
T ss_pred EEE----EcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHH
Confidence 655 678999999999999999999999999999999999999998843
No 22
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.56 E-value=1.2e-14 Score=135.38 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=97.4
Q ss_pred HHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhc-CCCc
Q 002191 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT-GQGT 830 (955)
Q Consensus 752 r~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-g~~~ 830 (955)
+.++++++. .|+..|.+|+++++|+++++++||++++++|+.+.+ +.||++...+...+.+++. ++..
T Consensus 5 ~ll~e~~~d---~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~--------~i~p~d~~~~~~~~~~~~~~~~~~ 73 (121)
T 3f1p_B 5 GLNVCQPTR---FISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVE--------FCHPEDQQLLRDSFQQVVKLKGQV 73 (121)
T ss_dssp ---CCCCCE---EEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGG--------GBCTTTHHHHHHHHHHHTTSTTCC
T ss_pred cceecCCCc---eEEEECCCceEEEECcchhhhhCCChHHHcCCCHHH--------eECHHHHHHHHHHHHHHHhcCCCc
Confidence 456777765 499999999999999999999999999999997553 6678999888888888874 5557
Q ss_pred ceeeEEEEcCCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeccCcccH
Q 002191 831 ENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQ 876 (955)
Q Consensus 831 ~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~ 876 (955)
+..++++++++|+.+|+..++.|+.|. +|.+.+++++.+|||++|+
T Consensus 74 ~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 74 LSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred ccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 889999999999999999999999987 8899999999999999886
No 23
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.56 E-value=7.3e-15 Score=157.04 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHHHHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHc
Q 002191 609 GVDELSSVACEMVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (955)
Q Consensus 609 ~~~eL~~~~~~l~~lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~ 685 (955)
.++++++.+++|+.++++++++|+++|. +|+|++||+++++++||+.++++|+++. .+.++++.......+...+.
T Consensus 54 ~~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~l~ 132 (258)
T 3p7n_A 54 TRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCR-FLAGSGTEPWLTDKIRQGVR 132 (258)
T ss_dssp -------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGG-GGCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChh-hccCCCCchhHHHHHHHHHH
Confidence 3555777778899999999999999999 8999999999999999999999999987 88888776666666666666
Q ss_pred CCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHh--HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002191 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE--KVLMDKFIRLQGDYEAIIQSVNPLIP 763 (955)
Q Consensus 686 ~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer--k~ae~~L~~se~~lr~i~e~~~~~id 763 (955)
.+.....++.+ .++||..+|+.++..|++|.+|.+.+++++++|||++ ++.+.++...+..+..+.+....
T Consensus 133 ~~~~~~~e~~~----~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~--- 205 (258)
T 3p7n_A 133 EHKPVLVEILN----YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLE--- 205 (258)
T ss_dssp HTCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHH---
T ss_pred cCCCeEEEEEE----EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHH---
Confidence 66666666665 6899999999999999999999999999999999999 55555555554444322221100
Q ss_pred CeeeecCCCcEeeecHHHHHHhCCChhhhcc
Q 002191 764 PIFASDENACCSEWNAAMEKVTGWMRHEVIG 794 (955)
Q Consensus 764 ~I~~~D~~g~i~~~N~a~~~l~G~~~eeviG 794 (955)
++.....| ..|+..+..+|++...+..
T Consensus 206 -i~~~~~~g---~~~~eia~~l~~s~~tv~~ 232 (258)
T 3p7n_A 206 -VTTLVASG---LRNKEVAARLGLSEKTVKM 232 (258)
T ss_dssp -HHHHHHTT---CCHHHHHHHHTCCHHHHHH
T ss_pred -HHHHHHcC---CCHHHHHHHHCcCHHHHHH
Confidence 11111123 3789999999999887755
No 24
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.54 E-value=1.9e-14 Score=134.02 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=99.8
Q ss_pred HHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHc-CCCcceEEEEEEe
Q 002191 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL-GEEDKNVELKLRK 698 (955)
Q Consensus 620 l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~-~~~~~~~e~~~~~ 698 (955)
...+++++++.|+.+|.+|+++++|+++++++||++++++|+++. +++||++...+...+..++. ++.....++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~-- 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV-EFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF-- 80 (121)
T ss_dssp ----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGG-GGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE--
T ss_pred ccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHH-HeECHHHHHHHHHHHHHHHhcCCCcccEEEEE--
Confidence 346789999999999999999999999999999999999999998 99999999998888888874 44556677777
Q ss_pred eeeccCCcEEEEEEEEEEeecC-CCCEEEEEEEEecchHhHH
Q 002191 699 FELQKQHSVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (955)
Q Consensus 699 ~~~~~dG~~~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ 739 (955)
.+++|..+|+.++..|++|. +|.+.+++++.+|||++|+
T Consensus 81 --~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 --RSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp --ECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred --EecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 78999999999999999987 7899999999999999885
No 25
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.54 E-value=6.6e-14 Score=136.77 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCccEEEEc-CCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcc-eEEE
Q 002191 617 ACEMVRLIETATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK-NVEL 694 (955)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D-~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~-~~e~ 694 (955)
+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+... ..+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHH-HHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHH-HhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 4578999999999999999 9999999999999999999 89999988 8888876666667777777544443 2223
Q ss_pred EEEeeeeccC-CcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhc
Q 002191 695 KLRKFELQKQ-HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSV 758 (955)
Q Consensus 695 ~~~~~~~~~d-G~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~ 758 (955)
.+... ...+ |..+|+.++..|+++.+|.+.|++++++|||++|+++++|++...+++..++++
T Consensus 93 ~~~~~-~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~ 156 (158)
T 3k3c_A 93 RLQTD-YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNV 156 (158)
T ss_dssp EEEEE-SSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC----
T ss_pred eEEec-cCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33211 1123 678999999999999999999999999999999999999999999888877765
No 26
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.54 E-value=2.1e-14 Score=141.03 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHHHHHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHH
Q 002191 608 QGVDELSSVACEMVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684 (955)
Q Consensus 608 ~~~~eL~~~~~~l~~lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l 684 (955)
+.++++++...++..++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+.+++........+...+
T Consensus 25 ~~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~~ 103 (166)
T 3ue6_A 25 KANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-FLQGPETDPRAVDKIRNAI 103 (166)
T ss_dssp ------CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-heeCCCCCHHHHHHHHHHH
Confidence 33444555567788999999999999999 7999999999999999999999999987 7777776666666666666
Q ss_pred cCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHH
Q 002191 685 LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKF 744 (955)
Q Consensus 685 ~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L 744 (955)
..+.....++.+ .+++|..+|+.++..|+++.+|.+.|++++++|||++|+++...
T Consensus 104 ~~~~~~~~e~~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~~ 159 (166)
T 3ue6_A 104 TKGVDTSVCLLN----YRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLVN 159 (166)
T ss_dssp HHTCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHHH
T ss_pred hcCCceEEEEEE----EcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHHH
Confidence 655555566655 67899999999999999999999999999999999999887763
No 27
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.53 E-value=2.4e-14 Score=132.31 Aligned_cols=107 Identities=7% Similarity=0.028 Sum_probs=96.6
Q ss_pred CCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCC
Q 002191 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (955)
Q Consensus 763 d~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG 842 (955)
+.|+..|.+|+++++|+++++++||++++++|+.+.+ +.||++...+...+.+++.++..+..++++++++|
T Consensus 10 ~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~--------~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 81 (117)
T 3f1p_A 10 TFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYE--------FYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHG 81 (117)
T ss_dssp EEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGG--------GBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTS
T ss_pred cEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhh--------eECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCC
Confidence 3588999999999999999999999999999987543 66799999888888888887778888999999999
Q ss_pred cEEEEEEEEeeeeCC-CCCEEEEEEEEeccCcccHH
Q 002191 843 QFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQP 877 (955)
Q Consensus 843 ~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~~ 877 (955)
+.+|+..++.|+.|. +|.+.+++++.+|||++|++
T Consensus 82 ~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 82 GYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp SEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred CEEEEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence 999999999999998 89999999999999999863
No 28
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.52 E-value=4.7e-14 Score=130.60 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcC--CCccccccccccHHHHHHHHHHHHcCCCcc
Q 002191 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG--KSLIDEVVHEESQGAVENLICRALLGEEDK 690 (955)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG--~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 690 (955)
|++++++|+.+++++++++|.+|.+|+++++|+++.+++|++.+++.| ..+. .+++|++...+...+..++.++...
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYF-QRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHH-HHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHH-hhcChhHHHHHHHHHHHHHhcCCCc
Confidence 455667889999999999999999999999999999999999999998 5566 7889999998888888888887777
Q ss_pred eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHH
Q 002191 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739 (955)
Q Consensus 691 ~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ 739 (955)
..++++ .+++|..+|+.+...|+++.+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRI----VRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred eEEEEE----ECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 777776 678999999999999999999999999999999999984
No 29
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.52 E-value=4.8e-14 Score=130.53 Aligned_cols=124 Identities=11% Similarity=0.056 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHh
Q 002191 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (955)
Q Consensus 744 L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (955)
|++++++|+.++++++. ++|.+|.+|+++++|+++++++|++.+++.|.. ..+....+|++...+...+..
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~ 72 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATE------DAYFQRVHPDDRARVRRELDR 72 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBH------HHHHHHBCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccH------HHHHhhcChhHHHHHHHHHHH
Confidence 56778889999999875 599999999999999999999999999998832 113346778898888888888
Q ss_pred hhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccH
Q 002191 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQ 876 (955)
Q Consensus 824 ~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~ 876 (955)
++.++..+..++++.+++|+.+|+..++.|+.+.+|.+.+++++++|||++|+
T Consensus 73 ~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 73 HVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp HHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred HHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 88888888999999999999999999999999999999999999999999874
No 30
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.52 E-value=2.7e-13 Score=148.09 Aligned_cols=224 Identities=8% Similarity=-0.004 Sum_probs=154.0
Q ss_pred HHHhcCccEEEEcCC-CcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHH--------------HcCC
Q 002191 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA--------------LLGE 687 (955)
Q Consensus 623 lie~~~~~I~~~D~d-g~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~--------------l~~~ 687 (955)
+++++...+++++.+ |+|+|+|+.+..++||+.++++|+++. +++||+|...+...+... ....
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~-d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~ 109 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFV-DLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECA 109 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGG-GGBCGGGHHHHHHHTCTTTCCCCC----------CC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchh-hhcChhhHHHHHHhhcccCCCCcCCCcccccccCCC
Confidence 567777888889886 999999999999999999999999999 999999999887654100 0112
Q ss_pred CcceEEEEEEeeeeccCCcEEEEEEEEEEe--ec---CCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002191 688 EDKNVELKLRKFELQKQHSVVYILVNACTS--RD---YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762 (955)
Q Consensus 688 ~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi--~d---~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~i 762 (955)
....+-++++.....++.+..++.+..... .. .++....++.+.+=.+.-+..++ .++. +.
T Consensus 110 ~~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~-----------~~~~-~~-- 175 (317)
T 4dj3_A 110 PAKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRI-----------PVDK-RI-- 175 (317)
T ss_dssp CCCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCC-----------CGGG-CE--
T ss_pred CCceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCc-----------ccCC-Cc--
Confidence 334555666432111222333444443221 11 11222223333322221110000 1111 12
Q ss_pred CCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCc---ceeeEEEEc
Q 002191 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGT---ENFPFGFFN 839 (955)
Q Consensus 763 d~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~---~~~e~~~~~ 839 (955)
-+...+.+|+++++|+++..++||.++|++|+.+.+ +.||+|...+...+.+++.++.. ...++|+++
T Consensus 176 -Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~--------~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~ 246 (317)
T 4dj3_A 176 -FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILT--------YLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCT 246 (317)
T ss_dssp -EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGG--------GBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEEC
T ss_pred -eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHH--------eECHHHHHHHHHHHHHHHHcCCCccccceEEEEEc
Confidence 267788999999999999999999999999998653 77899999888888888876544 468999999
Q ss_pred CCCcEEEEEEEEeeeeCC-CCCEEEEEEEEec
Q 002191 840 RQGQFVEVALTASRRTDA-EGKVIGCFCFMQI 870 (955)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~D 870 (955)
+||.++|++....+++|. .+++..++|.-+-
T Consensus 247 kdG~~vwvet~~~~~~np~s~~~e~II~~h~v 278 (317)
T 4dj3_A 247 QNGEYVILDSSWSSFVNPWSRKVSFIIGRHKV 278 (317)
T ss_dssp TTSCEEEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred cCCCEEEEEEEEEEEECCCCCcccEEEEEEEe
Confidence 999999999999999986 5667677777663
No 31
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.51 E-value=3.6e-14 Score=139.40 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=105.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccCh
Q 002191 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQ 811 (955)
Q Consensus 735 Terk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~ 811 (955)
..+++++.++++.+..++.++++++. +|+++|. +|+++++|+++++++||+.++++|+++.. + .++
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~-l-------~~~ 89 (166)
T 3ue6_A 21 DNPSKANRILEDPDYSLVKALQMAQQ---NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRF-L-------QGP 89 (166)
T ss_dssp ----------CCCCCHHHHHHHHTTS---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-G-------CCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCc---eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhh-e-------eCC
Confidence 45566777888888899999999975 5999999 79999999999999999999999998542 2 223
Q ss_pred hhHHHHHHHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHH
Q 002191 812 DMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (955)
Q Consensus 812 d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~ 880 (955)
++...+...+...+..+..+..++.+.+++|..+|+.+++.|+.+.+|.+.+++++++|||++|+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 90 ETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp TSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 333344455556666666788899999999999999999999999999999999999999998877644
No 32
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.51 E-value=8.9e-14 Score=131.82 Aligned_cols=122 Identities=9% Similarity=0.043 Sum_probs=92.7
Q ss_pred HHHHhcCCCCCCeeeecCCC---cEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCC
Q 002191 753 AIIQSVNPLIPPIFASDENA---CCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG 829 (955)
Q Consensus 753 ~i~e~~~~~id~I~~~D~~g---~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~ 829 (955)
.++++++. +|+++|.+| +|+++|+++++++||+.++++|++... +. +++........+.+.+..+.
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~-l~-------~~~~~~~~~~~~~~~~~~~~ 71 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRF-LQ-------GKHTDPAEVDNIRTALQNKE 71 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGG-GC-------CTTCCHHHHHHHHHHHHHTC
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhh-hC-------CCCCCHHHHHHHHHHHHcCC
Confidence 46677664 699999877 999999999999999999999997532 21 22222222334444555555
Q ss_pred cceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHhHHHH
Q 002191 830 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 887 (955)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~~aE~ 887 (955)
.+..++++.++||+.+|+.++..|+.+.+ +.+++++++|||++|+.|.++++..++
T Consensus 72 ~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~ 127 (132)
T 2pr5_A 72 PVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTE 127 (132)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999876 888999999999999998877655444
No 33
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.50 E-value=1.1e-13 Score=137.83 Aligned_cols=123 Identities=7% Similarity=-0.066 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCCCCCCeeeecCC---CcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHh
Q 002191 747 LQGDYEAIIQSVNPLIPPIFASDEN---ACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (955)
Q Consensus 747 se~~lr~i~e~~~~~id~I~~~D~~---g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (955)
...+|+.++++++. +|+++|.+ |+|+++|+++++++||+.++++|+.+.. +.++++...+...+..
T Consensus 5 ~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~--------~~~~~~~~~~~~~~~~ 73 (176)
T 4hia_A 5 QFEKIRAVFDRSGV---ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRF--------LQRGDENAQARADIRD 73 (176)
T ss_dssp HHHHHHHHHHHCSS---CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcce--------eeCCCCCHHHHHHHHH
Confidence 34578899999875 59999999 9999999999999999999999998543 2234444445555666
Q ss_pred hhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHH
Q 002191 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (955)
Q Consensus 824 ~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~ 880 (955)
.+..+..+..++.+.+++|+.+|+.+++.|+.+.+|.+.+++++++|||++|++|.+
T Consensus 74 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 74 ALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp HHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred HHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 666666888899999999999999999999999999999999999999999988855
No 34
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.50 E-value=1.1e-13 Score=129.55 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEee
Q 002191 623 LIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (955)
Q Consensus 623 lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~ 699 (955)
++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+++++........+...+..+.....++.+
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--- 77 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-FLQGHGTDPAHVRAIKSAIAAEKPIDIDIIN--- 77 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-hhcCCccCHHHHHHHHHHHHcCCCceeEEEE---
Confidence 46789999999999 9999999999999999999999999987 7887766666666666666666666666665
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHH
Q 002191 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGD 750 (955)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~ 750 (955)
.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++++..+.+.+
T Consensus 78 -~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 78 -YKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred -EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 67899999999999999999999999999999999999999998877654
No 35
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.49 E-value=4.2e-13 Score=146.79 Aligned_cols=226 Identities=10% Similarity=0.045 Sum_probs=154.4
Q ss_pred HHHhcCccEEEEcCC-CcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHH---------------HcC
Q 002191 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA---------------LLG 686 (955)
Q Consensus 623 lie~~~~~I~~~D~d-g~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~---------------l~~ 686 (955)
+++++...++++..+ |+|+|+|+.+..++||+.++++|+++. +++||+|.+.+...+... ...
T Consensus 31 lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~-d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~ 109 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFS-ELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDF 109 (320)
T ss_dssp TTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGG-GGBCHHHHHHHHHHCCTTTCCBTTC-----------
T ss_pred HHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHH-HhcCHHHHHHHHHhhcccCCCCcccCcccccccccC
Confidence 467777778888875 999999999999999999999999999 999999998877755310 011
Q ss_pred CCcceEEEEEEeeeeccCC--cEEEEEEEE--EEeecCCCC--EEEEEEEEecchHh-HHHHHHHHHHHHHHHHHHHhcC
Q 002191 687 EEDKNVELKLRKFELQKQH--SVVYILVNA--CTSRDYKNN--VKGVCFVGQDITHE-KVLMDKFIRLQGDYEAIIQSVN 759 (955)
Q Consensus 687 ~~~~~~e~~~~~~~~~~dG--~~~~v~v~~--~pi~d~~g~--v~gvv~v~~DITer-k~ae~~L~~se~~lr~i~e~~~ 759 (955)
.....+-++++.. ..++. +..++.+.+ ..+.+.+|. ....+....-+-.. +..+ +.....
T Consensus 110 ~~~rsF~CRmr~~-l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~------------i~~~~~ 176 (320)
T 4dj2_A 110 TQEKSVFCRIRGG-PDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPR------------IPPDKR 176 (320)
T ss_dssp --CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSC------------CCGGGC
T ss_pred CCceeEEEEEEEe-ccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccc------------ccCCCc
Confidence 1234455565432 12222 233333332 223444554 23333333222110 0000 000112
Q ss_pred CCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC-CCcc-eeeEEE
Q 002191 760 PLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTE-NFPFGF 837 (955)
Q Consensus 760 ~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g-~~~~-~~e~~~ 837 (955)
. -+...+.+|+++++|+++..++||.++|++|+.+.+ +.||+|...+...+.+.+.+ +... ..++|+
T Consensus 177 ~---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~--------~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~ 245 (320)
T 4dj2_A 177 I---FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLL--------FLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF 245 (320)
T ss_dssp E---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGG--------GBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE
T ss_pred e---EEEEecCCceEEEcCcceeccCCcChHHHcCCcHHH--------hCCHHHHHHHHHHHHHHHhcCCCcccceEEEE
Confidence 1 367789999999999999999999999999998553 77899999999989888874 4444 479999
Q ss_pred EcCCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeccCc
Q 002191 838 FNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVP 873 (955)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITe 873 (955)
+++||.++|++....++.|. .+++..++|.-+-++.
T Consensus 246 ~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 246 CARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp ECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred EccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 99999999999999999885 6788888888777665
No 36
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.49 E-value=1.6e-13 Score=126.43 Aligned_cols=110 Identities=10% Similarity=0.088 Sum_probs=96.9
Q ss_pred CCeeeec-CCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCC
Q 002191 763 PPIFASD-ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQ 841 (955)
Q Consensus 763 d~I~~~D-~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~d 841 (955)
+++|.+| .+|+++++|+++++++||+.+++.|.. .+..+.||++...+...+.+++.++..+..|+++++++
T Consensus 4 ~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~-------~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~d 76 (115)
T 3h9w_A 4 AIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVE-------DWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRD 76 (115)
T ss_dssp CEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHH-------HHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred eEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHH-------HHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCC
Confidence 4699999 788999999999999999999998821 13357889999999999999988888899999999999
Q ss_pred CcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHH
Q 002191 842 GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 879 (955)
Q Consensus 842 G~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el 879 (955)
|+.+|+..++.|++|.+|++++++|+..|||++|++|.
T Consensus 77 G~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 77 GHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999998874
No 37
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.48 E-value=6.1e-14 Score=141.81 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCccEEEEc-CCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcce-E
Q 002191 615 SVACEMVRLIETATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN-V 692 (955)
Q Consensus 615 ~~~~~l~~lie~~~~~I~~~D-~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~-~ 692 (955)
..+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+.... .
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 110 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGS 110 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHH-HHCTTSCSSSSHHHHHHHHHHCCCEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHH-HHCCchhhhhHHHHHHHHHHcCCccccc
Confidence 345678999999999999999 9999999999999999999 89999988 88877665545556666764444332 2
Q ss_pred EEEEEeeeecc-C-CcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHH----HHHHHHHHHHHHHhcCC
Q 002191 693 ELKLRKFELQK-Q-HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK----FIRLQGDYEAIIQSVNP 760 (955)
Q Consensus 693 e~~~~~~~~~~-d-G~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~----L~~se~~lr~i~e~~~~ 760 (955)
+..+.. .++ + |..+|+.++..|+++.+|.+.|++++++|||++|++|++ |++++.+++.++++++.
T Consensus 111 ~~~~~~--~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~~ 182 (185)
T 3kx0_X 111 EWRLQT--DYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV 182 (185)
T ss_dssp EEEEC----------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC----------------------
T ss_pred ceeEEe--eccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 233321 122 2 677999999999999999999999999999999999999 99999999999988753
No 38
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.48 E-value=8e-14 Score=128.81 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=98.2
Q ss_pred cCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCc
Q 002191 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706 (955)
Q Consensus 627 ~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~ 706 (955)
+++.++.+|.+|+++++|+++++++||++++++|+++. +++||++.+.+...+..++.++.....++++ .+++|.
T Consensus 8 ~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~----~~~dG~ 82 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAY-EFYHALDSENMTKSHQNLCTKGQVVSGQYRM----LAKHGG 82 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHSEEECCCEEE----ECTTSS
T ss_pred CccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchh-heECHHHHHHHHHHHHHHHhCCCeeeeEEEE----EecCCC
Confidence 46789999999999999999999999999999999998 9999999999888888888776666667777 789999
Q ss_pred EEEEEEEEEEeecC-CCCEEEEEEEEecchHhHH
Q 002191 707 VVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (955)
Q Consensus 707 ~~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ 739 (955)
.+|+.++..|++|. +|.+.+++++.+|||++|+
T Consensus 83 ~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 83 YVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999998 8899999999999999875
No 39
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.47 E-value=3.4e-13 Score=127.42 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=97.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhH
Q 002191 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDML 814 (955)
Q Consensus 735 Terk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~ 814 (955)
|+++++|++|++++.+|+.++++++. +|+++|.+|+|++||+++++++||+.+|++|+++.. +.++++.
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~--------l~~~~~~ 70 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRI--------LMPEPYR 70 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG--------GSCTTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHH--------HCCchhH
Confidence 78999999999999999999999875 599999999999999999999999999999997553 2223333
Q ss_pred HHHHHHHHhhhcCCC----cceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 815 TKFMILLYQGITGQG----TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 815 ~~~~~~l~~~~~g~~----~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
......+......+. ....++..+++||+.+|+.+++.|+.+.+ ..+++++++|||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 71 HEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp HHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 322333333322211 13457788999999999999999997643 345889999998
No 40
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.46 E-value=6.9e-13 Score=123.97 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=94.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhc--cCCccchhcccchhccC
Q 002191 733 DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--GKMLPREIFGNFCRMKG 810 (955)
Q Consensus 733 DITerk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eevi--Gk~~~~~~~~~~~~l~~ 810 (955)
|+|++|+++++|++++++|+.++++++. +|+++|.+|+++++|+++++++||+.++++ |+.... +.+
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~--------~~~ 69 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPD---MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFD--------LMF 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTB--------TTC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCc---EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhh--------ccC
Confidence 6899999999999999999999999975 599999999999999999999999999995 555432 122
Q ss_pred hhhHHHHHHHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 811 QDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 811 ~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
+...+...+.....++ ...++.++.++||+.+|+.++..++.+ +|.. +++++++|||
T Consensus 70 --~~~~~~~~~~~~~~~~-~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 70 --DAEDVQTQLSGFSVDE-RRKFEGLYERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp --CHHHHHHHHHTCCTTC-EEEEEEEEECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred --CHHHHHHHHHHHhcCC-CcceEEEEEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 1222333333333332 456677888999999999988888743 4444 4788899998
No 41
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.45 E-value=5.6e-13 Score=130.33 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCccEEEEcCCC---cEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEE
Q 002191 618 CEMVRLIETATAPIFGVDSSG---TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (955)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg---~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 694 (955)
+.++.++++++++++++|.+| +|+++|+++++++|++.++++|+++. .++++.........+...+..+.....++
T Consensus 25 ~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-eecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 567889999999999999999 99999999999999999999999987 77777665555555666665555555555
Q ss_pred EEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHH
Q 002191 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753 (955)
Q Consensus 695 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~ 753 (955)
.+ .+++|..+|+.++..|+.+.+|.+.|++++++|||++|++++++++++++++.
T Consensus 104 ~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~ 158 (162)
T 3sw1_A 104 RN----YRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPKP 158 (162)
T ss_dssp EE----ECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC----
T ss_pred EE----ECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 55 57899999999999999999999999999999999999999999888776653
No 42
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.44 E-value=2.8e-13 Score=124.74 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=97.0
Q ss_pred cCccEEEEc-CCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccCC
Q 002191 627 ATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705 (955)
Q Consensus 627 ~~~~I~~~D-~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG 705 (955)
+++++|.+| .+|+++++|+++++++||+++++.|...+..++||++.+.+...+..++.++.....++++ .+++|
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~----~~~dG 77 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRA----LHRDG 77 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEE----ECTTS
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEE----EcCCC
Confidence 578999999 6889999999999999999999998433227899999999999998888887777777777 78999
Q ss_pred cEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHH
Q 002191 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742 (955)
Q Consensus 706 ~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~ 742 (955)
..+|+...+.|++|.+|++++++++..|||++|.+|+
T Consensus 78 ~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 78 HYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999998875
No 43
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.44 E-value=2.1e-12 Score=140.66 Aligned_cols=227 Identities=8% Similarity=0.034 Sum_probs=143.2
Q ss_pred HHHHhcCccEEEEcCC-CcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHH--------------Hc-
Q 002191 622 RLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA--------------LL- 685 (955)
Q Consensus 622 ~lie~~~~~I~~~D~d-g~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~--------------l~- 685 (955)
.+++++...+++++.+ |+|+|+|+.+..++||+.++++|+++. +++||+|.+.+...+... ..
T Consensus 19 lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~-d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~ 97 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFV-EFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQE 97 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGG-GGBCTTTHHHHHHHTCTTSSCBCC-----------
T ss_pred HHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchh-hccCHhHHHHHHHhccccCCCCcccccCccccccc
Confidence 3567778888899986 999999999999999999999999999 999999999887765210 00
Q ss_pred CCCcceEEEEEEeeee-ccCCcEEEEEEEEE--EeecCCCC--EEEEEEEEecchH-hHHHHHHHHHHHHHHHHHHHhcC
Q 002191 686 GEEDKNVELKLRKFEL-QKQHSVVYILVNAC--TSRDYKNN--VKGVCFVGQDITH-EKVLMDKFIRLQGDYEAIIQSVN 759 (955)
Q Consensus 686 ~~~~~~~e~~~~~~~~-~~dG~~~~v~v~~~--pi~d~~g~--v~gvv~v~~DITe-rk~ae~~L~~se~~lr~i~e~~~ 759 (955)
......+.+++++.+. .+..+..++.+... .+.+.+|. ....+.+..-+.. -+... ...+. +
T Consensus 98 ~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~-----------~~~~~-~ 165 (309)
T 3gdi_A 98 CMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPR-----------IPPEK-R 165 (309)
T ss_dssp ---CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSC-----------CCGGG-C
T ss_pred cCCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCC-----------cCCCC-c
Confidence 0113455566643211 11123334444332 23344443 2222333222210 00000 00111 1
Q ss_pred CCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC-CCcce-eeEEE
Q 002191 760 PLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTEN-FPFGF 837 (955)
Q Consensus 760 ~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g-~~~~~-~e~~~ 837 (955)
. -+...+.+|+++++|+++..++||.++|++|+.+. .+.||+|...+...+.+++.+ +.... .++|+
T Consensus 166 ~---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~--------~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~ 234 (309)
T 3gdi_A 166 I---FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL--------VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRF 234 (309)
T ss_dssp E---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH--------HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred e---EEEEecCCCeEEEECcccccccCcCHHHHcCCCHH--------HhCCHHHHHHHHHHHHHHHhcCCceeeceEEEE
Confidence 1 26778999999999999999999999999999855 377899999888888888874 43444 58999
Q ss_pred EcCCCcEEEEEEEEeeeeCC-CCCEEEEEEEEeccC
Q 002191 838 FNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILV 872 (955)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DIT 872 (955)
+++||.++|++....++.|. .+++..++|+-+.++
T Consensus 235 ~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 235 RTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp ECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 99999999999999998875 577778888766655
No 44
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.42 E-value=8.9e-13 Score=124.50 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=98.2
Q ss_pred cccchHHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHc
Q 002191 606 KMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (955)
Q Consensus 606 l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~ 685 (955)
+++++++|++.+.+++.++++++++|+++|.+|+|++||++++++|||+.+|++|+++. .+++++........+.....
T Consensus 4 ~~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~-~l~~~~~~~~~~~~~~~~~~ 82 (130)
T 1d06_A 4 MLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLR-ILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHH-HHCCchhHHHHHHHHHHHHh
Confidence 45667888888889999999999999999999999999999999999999999999987 78777666555555544443
Q ss_pred CCCc----ceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 686 GEED----KNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 686 ~~~~----~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
.+.. ...++.. .++||..+|+.++..|+.+. ...+++++++|||
T Consensus 83 ~~~~~~~~~~~e~~~----~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 83 TGEKRIIGIDRVVSG----QRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTTSCEEEEE----ECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred cCCccccCCeeEEEE----EeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 2221 2334444 68999999999999999864 3345788999998
No 45
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.42 E-value=8.4e-13 Score=121.12 Aligned_cols=117 Identities=8% Similarity=0.014 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhc
Q 002191 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT 826 (955)
Q Consensus 747 se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 826 (955)
++++|+.++++++. ++|.+|.+|+++++|+++++++||+.+++.++... +..+.||++...+...+.+.+.
T Consensus 2 s~~~~~~l~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~------~~~~i~p~d~~~~~~~~~~~~~ 72 (118)
T 3icy_A 2 NAEELQALVDNIPA---AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLN------TLSMIHHDDRHMLSNAYSKLRE 72 (118)
T ss_dssp HHHHHHHHHTTCCC---CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEG------GGGGBCGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCc---eEEEEEcCCCceEEechhHhhcCCCHHHccCChhH------HHHHcCHHHHHHHHHHHHHHHh
Confidence 46789999999985 49999999999999999999999999998776421 2347789999999998988888
Q ss_pred CCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 827 GQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 827 g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
++..+..++++.+++|+.+|+...+.|+++.+|.+.+++|+++|||
T Consensus 73 ~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 73 AKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp SCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred cCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 8888999999999999999999999999999999999999999998
No 46
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.41 E-value=5.8e-13 Score=129.98 Aligned_cols=130 Identities=14% Similarity=0.155 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCc
Q 002191 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED 689 (955)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 689 (955)
..++++.+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++. ++++. ..+.+...+..++..+..
T Consensus 14 ~~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p~-~~~~~~~~l~~vl~~G~~ 91 (152)
T 3mxq_A 14 SNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPE-SADYLKRKIDTALVIESS 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSGG-GHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcCC-hHHHHHHHHHHHHhcCCc
Confidence 3457777778899999999999999999999999999999999999999999998 88877 777778888888876544
Q ss_pred ceEEEE-------EEee-eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHH
Q 002191 690 KNVELK-------LRKF-ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741 (955)
Q Consensus 690 ~~~e~~-------~~~~-~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae 741 (955)
...... +... ...++|..+|..++..|++|.+|++.|++.+++|||+++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 92 SFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 211100 1000 012456788999999999999999999999999999998754
No 47
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.41 E-value=1.6e-12 Score=120.59 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=79.9
Q ss_pred hcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCc----ceEEEEEEeeee
Q 002191 626 TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED----KNVELKLRKFEL 701 (955)
Q Consensus 626 ~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~----~~~e~~~~~~~~ 701 (955)
+++++|+++|.+|+|++||++++++|||+.++++|+++. .+++++........+......+.. ...++.. .
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 75 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVN-ILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTG----K 75 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEE----E
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHH-HhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEE----E
Confidence 368999999999999999999999999999999999987 777776655544444444432221 2334444 6
Q ss_pred ccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHH
Q 002191 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (955)
Q Consensus 702 ~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~ 746 (955)
++||..+|+.++..|+.+.+ ..+++++++|||++|++|++|++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 76 RRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp CTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC-----------
T ss_pred eCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHh
Confidence 89999999999999998643 34678999999999999998764
No 48
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.41 E-value=1.2e-12 Score=119.78 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=83.6
Q ss_pred CCeeeec---CCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEc
Q 002191 763 PPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFN 839 (955)
Q Consensus 763 d~I~~~D---~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~ 839 (955)
++|+++| .+|+|+++|++|++++||+.+|++|++... + .+++........+.+++..+..+..++..++
T Consensus 4 ~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~-l-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 75 (109)
T 1n9l_A 4 HTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRF-L-------QGEGTDPKEVQKIRDAIKKGEACSVRLLNYR 75 (109)
T ss_dssp CEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-G-------CCTTCCHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred cEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchh-c-------CCCCCCHHHHHHHHHHHHcCCcEEEEEEEEc
Confidence 4689999 479999999999999999999999997432 2 1222222223345555555667889999999
Q ss_pred CCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCc
Q 002191 840 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVP 873 (955)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITe 873 (955)
+||+.+|+.+++.|++|.+|++.+++++.+|||+
T Consensus 76 kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 76 KDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999996
No 49
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.40 E-value=8.7e-13 Score=123.25 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=92.4
Q ss_pred HHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcc
Q 002191 755 IQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (955)
Q Consensus 755 ~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~ 831 (955)
+++++ ++|+++|. +|+++++|+++++++||+.++++|+.+.. + .++++...+...+...+..+..+
T Consensus 3 ~~~~~---~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T 3t50_A 3 SEFTL---MPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRF-L-------QGHGTDPAHVRAIKSAIAAEKPI 71 (128)
T ss_dssp CCCCS---SCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-G-------CCTTSCHHHHHHHHHHHHTTCCE
T ss_pred cccCc---ccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhh-h-------cCCccCHHHHHHHHHHHHcCCCc
Confidence 34444 46999999 99999999999999999999999998543 2 22333344455566666677788
Q ss_pred eeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHH
Q 002191 832 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 881 (955)
Q Consensus 832 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~l 881 (955)
..++++.+++|..+|+.+++.|+.+.+|.+.+++++++|||++|+++.+.
T Consensus 72 ~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 72 DIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----
T ss_pred eeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhh
Confidence 88999999999999999999999999999999999999999999888653
No 50
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.40 E-value=1.6e-12 Score=122.79 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=114.1
Q ss_pred HHHHHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEE
Q 002191 620 MVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (955)
Q Consensus 620 l~~lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~ 696 (955)
++.++++++++++++|. +|+++++|+++.+++|++.++++|+++. .+.+++........+...+..+.....++.+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN 82 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHH-HhcCCcCChHHHHHHHHHHhcCCCcceEEEE
Confidence 34578999999999999 9999999999999999999999999987 7877777666666666666666665666655
Q ss_pred EeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcC
Q 002191 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVN 759 (955)
Q Consensus 697 ~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~ 759 (955)
.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+ ++++.+.+.+++.++++++
T Consensus 83 ----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~ 140 (146)
T 2v0u_A 83 ----YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENID 140 (146)
T ss_dssp ----ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHH
T ss_pred ----EecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccH
Confidence 678999999999999999999999999999999999999 6777778888888887754
No 51
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.40 E-value=2.3e-12 Score=117.71 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEE
Q 002191 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (955)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 695 (955)
..++++.++++++++++++|.+|+++++|+++++++|++.++++|+++. .+.+++........+...+..+.....++.
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-MLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-HhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 3467889999999999999999999999999999999999999999987 777777766666666666666666666666
Q ss_pred EEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHH
Q 002191 696 LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739 (955)
Q Consensus 696 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ 739 (955)
+ ..++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 84 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 84 M----LHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp E----ECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred E----EccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 5 678999999999999999999999999999999999885
No 52
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.39 E-value=2.1e-12 Score=117.25 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEE
Q 002191 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (955)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (955)
++++.++++++++++++|.+|+++++|+++++++|++.++++|+++. +++ +++...+...+..++.++.....+..+
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHY-DIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF- 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHH-HHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred HHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHH-HHC-CccHHHHHHHHHHHhcCCcceeeeeEE-
Confidence 56889999999999999999999999999999999999999999988 776 555566777777777765544333344
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
.+++|..+|+.++..|+++.+|.+.|++++++|||
T Consensus 80 ---~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 80 ---VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ---EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ---EcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 57899999999999999999999999999999998
No 53
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.39 E-value=2.9e-12 Score=116.40 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=94.6
Q ss_pred HHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEee
Q 002191 623 LIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (955)
Q Consensus 623 lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~ 699 (955)
++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+.+++........+...+..+.....++.+
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-FLQGPETDQATVQKIRDAIRDQRETTVQLIN--- 77 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-HhcCCCCChHHHHHHHHHHHcCCCcceEEEE---
Confidence 47889999999999 9999999999999999999999999987 7777776666666666667666666666665
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhH
Q 002191 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (955)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk 738 (955)
.+++|..+|+.++..|+++.+|.+.+++++++|||+++
T Consensus 78 -~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 78 -YTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred -ecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 67899999999999999999999999999999999874
No 54
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.39 E-value=8.6e-13 Score=122.48 Aligned_cols=115 Identities=9% Similarity=0.140 Sum_probs=87.6
Q ss_pred HHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccH-HHHHHHHHHHHcCCCcceEEEEEE
Q 002191 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ-GAVENLICRALLGEEDKNVELKLR 697 (955)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~-~~~~~~l~~~l~~~~~~~~e~~~~ 697 (955)
.|+.++++++++++ +|.+|+|+++|+++++++||+.++++|+++. .+++++.. ..+...+...+..+.....++.+
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 80 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYPSSDEFERIGERISPVMIAHGSYADDRIM- 80 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE-
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccCChhhHHHHHHHHHHHHhcCCcceEEEEE-
Confidence 37889999999996 5789999999999999999999999999987 66655322 33444444444444455556665
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHH
Q 002191 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740 (955)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~a 740 (955)
.++||..+|+.++..|+ +.++...+++++++|||++|++
T Consensus 81 ---~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 ---KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ---ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ---EeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 78999999999999998 5566677889999999999976
No 55
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.38 E-value=4e-12 Score=116.98 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCccEEEEc---CCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceE
Q 002191 616 VACEMVRLIETATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (955)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D---~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 692 (955)
.+++++.++++++++++++| .+|+++++|+++++++|++.++++|+++. .+.++.........+...+..+.....
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCR-FLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChh-hccCCCCCchHHHHHHHHHHcCCccee
Confidence 34567899999999999999 99999999999999999999999999987 777776655555555555555555555
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHH
Q 002191 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743 (955)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~ 743 (955)
++.+ .+++|..+|+.+...|+.+.+|.+.|++++++|||++|+++++
T Consensus 83 ~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLN----YKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEE----EcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 5554 5788999999999999999999999999999999999988754
No 56
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.38 E-value=4.2e-12 Score=115.97 Aligned_cols=120 Identities=11% Similarity=0.163 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhh
Q 002191 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGI 825 (955)
Q Consensus 746 ~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 825 (955)
+++.+++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+. . +.+++....+...+...+
T Consensus 4 ~~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~-------~~~~~~~~~~~~~~~~~~ 72 (124)
T 3lyx_A 4 DILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-M-------LHVPGDTEHITSEVISAV 72 (124)
T ss_dssp CHHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-G-------GSCTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-H-------hcCcchhhHHHHHHHHHH
Confidence 346678899999875 59999999999999999999999999999999765 2 223444445555566666
Q ss_pred cCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccH
Q 002191 826 TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQ 876 (955)
Q Consensus 826 ~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~ 876 (955)
.++..+..++.+..++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 73 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 73 ENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp HHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred HcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 667688889999999999999999999999999999999999999999875
No 57
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.37 E-value=5.4e-12 Score=116.98 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcc
Q 002191 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK 690 (955)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 690 (955)
.+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++. .+.++.........+..... +...
T Consensus 4 ~~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSRGVDSGWAAASLARIVG-GEPL 81 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTTCSTTSHHHHHHHHHHT-TCCE
T ss_pred hHHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCCccchhHHHHHHHHHHc-CCcE
Confidence 457788899999999999999999999999999999999999999999999876 55444332233334444443 3334
Q ss_pred eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 691 ~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
..+..+ .++||..+|+.++..|+. +|. ++++++|||
T Consensus 82 ~~e~~~----~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 82 REERTV----WTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEEEE----EecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 455555 789999999999999986 455 567889998
No 58
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.37 E-value=2.6e-12 Score=117.96 Aligned_cols=124 Identities=8% Similarity=-0.004 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCC-CcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHH
Q 002191 739 VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDEN-ACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKF 817 (955)
Q Consensus 739 ~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~-g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~ 817 (955)
++++++++++++|+.++++++. ++|.+|.+ |+++++|+++++++|++.+++.|+... +....++++...+
T Consensus 1 ~~e~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~ 71 (125)
T 3eeh_A 1 RAKQQAAKSERRVRELTEATND---ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHD------FLNGIHPEDRELM 71 (125)
T ss_dssp ---------CHHHHHHHSCCCC---EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGG------GGGGBCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCc---eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHH------HHHhcCHHHHHHH
Confidence 3567888899999999999875 59999999 999999999999999999999987621 2235678888887
Q ss_pred HHHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 818 MILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 818 ~~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
...+..... +.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 72 ~~~~~~~~~-~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 72 KDTMQSLMD-GESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHHT-TCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHc-CCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 777777444 446788999999999999999999999999999999999999998
No 59
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.36 E-value=5.2e-12 Score=132.10 Aligned_cols=111 Identities=13% Similarity=0.039 Sum_probs=92.1
Q ss_pred eeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCCcE
Q 002191 765 IFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQF 844 (955)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG~~ 844 (955)
|+++|.+|+|+++|+++++++||+.+|++|+++.. +.+ +.....+...+.+.+..+..+..|++.+++||+.
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 73 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRI-VNS-------GYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTR 73 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGG-GCC-------SCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCE
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHH-cCC-------CCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCE
Confidence 78999999999999999999999999999997542 211 1111223334445566677899999999999999
Q ss_pred EEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHh
Q 002191 845 VEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 883 (955)
Q Consensus 845 ~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~ 883 (955)
+|+..+..|++|.+|++.+++++.+|||++|++|.++++
T Consensus 74 ~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~ 112 (227)
T 3ewk_A 74 YWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR 112 (227)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH
T ss_pred EeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH
Confidence 999999999999999999999999999999999877654
No 60
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.36 E-value=5.9e-12 Score=114.35 Aligned_cols=110 Identities=11% Similarity=0.081 Sum_probs=90.4
Q ss_pred HHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcc
Q 002191 755 IQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (955)
Q Consensus 755 ~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~ 831 (955)
+++++ ++++++|. +|+++++|+++++++||+.++++|+.+.. +.+++........+.+.+..+..+
T Consensus 3 l~~~~---~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (115)
T 4eet_B 3 PEFIE---KNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARF--------LQGPETDQATVQKIRDAIRDQRET 71 (115)
T ss_dssp --CCC---CSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred cccCC---CcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHH--------hcCCCCChHHHHHHHHHHHcCCCc
Confidence 45555 46999999 99999999999999999999999998542 222333344455566666677788
Q ss_pred eeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCccc
Q 002191 832 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 875 (955)
Q Consensus 832 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk 875 (955)
..++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||+++
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 72 TVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred ceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 88999999999999999999999999999999999999999974
No 61
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.36 E-value=1.2e-12 Score=127.80 Aligned_cols=127 Identities=9% Similarity=0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeeec-CCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHh
Q 002191 745 IRLQGDYEAIIQSVNPLIPPIFASD-ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (955)
Q Consensus 745 ~~se~~lr~i~e~~~~~id~I~~~D-~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (955)
...+++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++.+ +++ ++....+...+.+
T Consensus 13 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~-~~~-------~~~~~~~~~~~~~ 79 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPARE-VYP-------ELEGQQIYEMLDR 79 (158)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHH-HSG-------GGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHH-hCC-------chhHHHHHHHHHH
Confidence 3445679999999975 599999 9999999999999999999 899998653 333 2332234455666
Q ss_pred hhcCCCccee-eEEE--EcCC--CcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHhH
Q 002191 824 GITGQGTENF-PFGF--FNRQ--GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGL 884 (955)
Q Consensus 824 ~~~g~~~~~~-e~~~--~~~d--G~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~~ 884 (955)
++..+.+... +..+ .+.+ |..+|+.++..|+++.+|.+.|++++++|||++|+++.++++.
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~ 145 (158)
T 3k3c_A 80 VYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEAR 145 (158)
T ss_dssp HHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHH
Confidence 6644434333 3333 3322 7789999999999999999999999999999999998776543
No 62
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.36 E-value=4e-12 Score=117.81 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=73.6
Q ss_pred CCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCC----cceeeEEEE
Q 002191 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG----TENFPFGFF 838 (955)
Q Consensus 763 d~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~----~~~~e~~~~ 838 (955)
++|+++|.+|+|++||+++++++||+.++++|+++.. ++ ++++.......+......+. ....++..+
T Consensus 4 d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~-l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (119)
T 2vv6_A 4 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNI-LM-------PEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGK 75 (119)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG-GS-------CTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEE
T ss_pred ceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHH-hC-------CchHHHHHHHHHHHHhcCCCcccCCCceEEEEE
Confidence 5799999999999999999999999999999997653 22 23333222222332222211 134577889
Q ss_pred cCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHH
Q 002191 839 NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 882 (955)
Q Consensus 839 ~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq 882 (955)
++||+.+|+.+++.|+.+.+ ..+++++++|||++|++|.+++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~ 117 (119)
T 2vv6_A 76 RRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQ 117 (119)
T ss_dssp CTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC----------
T ss_pred eCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHH
Confidence 99999999999999998643 3468899999999999887654
No 63
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.36 E-value=2.4e-12 Score=118.21 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHHHHHHhcCccEEEEcCC-CcEeeecHHHHHHhCCCchhhcCCC--ccccccccccHHHHHHHHHHHHc
Q 002191 609 GVDELSSVACEMVRLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKS--LIDEVVHEESQGAVENLICRALL 685 (955)
Q Consensus 609 ~~~eL~~~~~~l~~lie~~~~~I~~~D~d-g~i~~~N~~~~~l~G~~~eeliG~~--~~~~l~~~~~~~~~~~~l~~~l~ 685 (955)
++++|++.+++++.+++++++++|++|.+ |+++++|+++++++|++.+++.|+. +. +++++++...+...+.....
T Consensus 2 ~e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFL-NGIHPEDRELMKDTMQSLMD 80 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGG-GGBCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHH-HhcCHHHHHHHHHHHHHHHc
Confidence 35667778889999999999999999999 9999999999999999999999887 55 77888888888777777544
Q ss_pred CCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 686 ~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
+ .....++++ .+++|..+|+.+...|+.+.+|.+.+++++++|||
T Consensus 81 ~-~~~~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 81 G-ESADVECRV----NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp T-CCEEEEEEE----CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred C-CCccEEEEE----EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 4 444566665 67889999999999999999999999999999998
No 64
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.36 E-value=2e-12 Score=126.36 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCCCCCeeeecCCC---cEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhh
Q 002191 748 QGDYEAIIQSVNPLIPPIFASDENA---CCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQG 824 (955)
Q Consensus 748 e~~lr~i~e~~~~~id~I~~~D~~g---~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 824 (955)
+..++.++++++. +|+++|.+| +++++|+++++++|++.++++|+.+.. ++. ++....+...+...
T Consensus 24 ~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~~-------~~~~~~~~~~~~~~ 92 (162)
T 3sw1_A 24 AQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRF-LQG-------DDRDQLGRARIRKA 92 (162)
T ss_dssp HHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGG-GTT-------TCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcce-ecC-------CCcCHHHHHHHHHH
Confidence 4568889999875 599999999 999999999999999999999998643 222 22222233444555
Q ss_pred hcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHhHHHH
Q 002191 825 ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 887 (955)
Q Consensus 825 ~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~~aE~ 887 (955)
+..+..+..++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+.+.++++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~ 155 (162)
T 3sw1_A 93 MAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRAR 155 (162)
T ss_dssp HHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC-
T ss_pred HhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 555667888899999999999999999999999999999999999999999998887655443
No 65
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.35 E-value=1.6e-12 Score=120.61 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCC
Q 002191 750 DYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQG 829 (955)
Q Consensus 750 ~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~ 829 (955)
+|+.++++++. +|+ +|.+|+|+++|+++++++||+.++++|+.+.. +++ .++....+...+...+.++.
T Consensus 4 ~~~~~~~~~~~---~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~ 72 (120)
T 3mqq_A 4 DYKTAFHLAPI---GLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEV-LYP------SSDEFERIGERISPVMIAHG 72 (120)
T ss_dssp CHHHHHHHCSS---EEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGG-GSS------SHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCc---eEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhh-ccC------ChhhHHHHHHHHHHHHhcCC
Confidence 47889999875 465 57799999999999999999999999998542 222 12232344444555555555
Q ss_pred cceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHH
Q 002191 830 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 877 (955)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~ 877 (955)
.+..++++.+++|+.+|+.++..|+ +.+|...+++++++|||++|+.
T Consensus 73 ~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 73 SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 7888999999999999999999998 5666667889999999999875
No 66
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.35 E-value=6.6e-12 Score=118.47 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=96.5
Q ss_pred HHHHHHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC
Q 002191 751 YEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG 827 (955)
Q Consensus 751 lr~i~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g 827 (955)
++.++++++. +++++|. +|+++++|+++++++|++.++++|+.+.. +.++++...+...+...+..
T Consensus 4 l~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (146)
T 2v0u_A 4 LATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRF--------LQGPETDRATVRKIRDAIDN 72 (146)
T ss_dssp CCCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHH--------hcCCcCChHHHHHHHHHHhc
Confidence 3456777764 5999999 99999999999999999999999997543 22344444445556666666
Q ss_pred CCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHH
Q 002191 828 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 878 (955)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e 878 (955)
+..+..++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++|+.+
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~~ 123 (146)
T 2v0u_A 73 QTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDA 123 (146)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHH
T ss_pred CCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHHH
Confidence 767888999999999999999999999999999999999999999998833
No 67
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.35 E-value=5.9e-12 Score=115.17 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=85.0
Q ss_pred cCccEEEEc---CCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeecc
Q 002191 627 ATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703 (955)
Q Consensus 627 ~~~~I~~~D---~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~ 703 (955)
++++|+++| .+|+|+++|+++++++||+.+|++|++.. .+.+++........+...+..+.....++.. .++
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~k 76 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FLQGEGTDPKEVQKIRDAIKKGEACSVRLLN----YRK 76 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE----ECT
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE----EcC
Confidence 578999999 47999999999999999999999999976 5655554333333444445445555556655 689
Q ss_pred CCcEEEEEEEEEEeecCCCCEEEEEEEEecchH
Q 002191 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736 (955)
Q Consensus 704 dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITe 736 (955)
||+.+|+.++..|++|.+|++.+++++.+|||+
T Consensus 77 dG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 77 DGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999995
No 68
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.35 E-value=2.2e-12 Score=118.33 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCc--cccccccccHHHHHHHHHHHHcCCCcceEE
Q 002191 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL--IDEVVHEESQGAVENLICRALLGEEDKNVE 693 (955)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~--~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (955)
++++|+.+++++++++|.+|.+|.++++|+++.+++|++.+++.+... . +++||++...+...+..++.++.....+
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTL-SMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGG-GGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHH-HHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 356789999999999999999999999999999999999999887753 5 7889999999988888888877776777
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
+++ .+++|..+|+.....|+++.+|.+.+++++++|||
T Consensus 81 ~r~----~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 81 YRI----VTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEE----ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEE----ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 776 68999999999999999999999999999999998
No 69
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.34 E-value=7.8e-12 Score=115.01 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeec---CCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHH
Q 002191 746 RLQGDYEAIIQSVNPLIPPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLY 822 (955)
Q Consensus 746 ~se~~lr~i~e~~~~~id~I~~~D---~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~ 822 (955)
+++..++.++++++. +++++| .+|+++++|+++++++|++.++++|+.+.. + .+++....+...+.
T Consensus 3 ~~~~~~~~~~~~~~~---~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~-~-------~~~~~~~~~~~~~~ 71 (130)
T 2z6d_A 3 RVSQELKTALSTLQQ---TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRF-L-------QGPDTDKNEVAKIR 71 (130)
T ss_dssp ----CHHHHHHHTTC---EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-G-------CCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHhccc---ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhh-c-------cCCCCCchHHHHHH
Confidence 456678899999875 599999 999999999999999999999999997643 2 22333333344455
Q ss_pred hhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHH
Q 002191 823 QGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 879 (955)
Q Consensus 823 ~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el 879 (955)
..+..+.....++.+.+++|+.+|+.+...|+.+.+|.+.+++++++|||++|+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 72 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp HHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred HHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 555666677888888999999999999999999999999999999999999988764
No 70
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.34 E-value=8.1e-12 Score=115.79 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHH
Q 002191 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLY 822 (955)
Q Consensus 743 ~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~ 822 (955)
+|++++++|+.++++++. +|+++|.+|+++++|+++++++||+.+|++|+++.. +.+ ....... ...+.
T Consensus 5 ~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~-~~~----~~~~~~~---~~~~~ 73 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV-LSR----GVDSGWA---AASLA 73 (117)
T ss_dssp SHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTT-TTT----CSTTSHH---HHHHH
T ss_pred HHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHH-hCC----ccchhHH---HHHHH
Confidence 467889999999999975 599999999999999999999999999999997542 211 1111111 12222
Q ss_pred hhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 823 QGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 823 ~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
. +..+..+..+++++++||+.+|+.+++.|+. +|. ++++++|||
T Consensus 74 ~-~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 74 R-IVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp H-HHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred H-HHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 2 3334467789999999999999999999986 465 567789998
No 71
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.32 E-value=6e-12 Score=114.25 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC
Q 002191 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG 827 (955)
Q Consensus 748 e~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g 827 (955)
+++|+.++++++. +++++|.+|+++++|+++++++|++.++++|+.+.+ ++ |++...+...+..++.+
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~--------~~~~~~~~~~~~~~~~~ 69 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYD-IF--------PEIGEEWKSVHRRGLAG 69 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHH-HC--------TTCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHH-HC--------CccHHHHHHHHHHHhcC
Confidence 4578899999875 599999999999999999999999999999998654 22 23333445556666666
Q ss_pred CCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 828 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
+.....+.++.+++|+.+|+.++..|+.+.+|.+.|++++++|||
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 70 EVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp CCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 655545558899999999999999999999999999999999998
No 72
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.32 E-value=6.1e-12 Score=122.95 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=87.5
Q ss_pred ccccccchHHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHH
Q 002191 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682 (955)
Q Consensus 603 ~~~l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~ 682 (955)
...+.+..+++.+.+..+..+++.++++++++|.+|+++++|+++.+++|++.++++|+++. ++++++........+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 103 (167)
T 1v9y_A 25 AEVIMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID-MLIPRDLRPAHPEYIRH 103 (167)
T ss_dssp ---------------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG-GGSCGGGTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChh-hccCccccchHHHHHHH
Confidence 33445556667777788999999999999999999999999999999999999999999988 88877766666666666
Q ss_pred HHcCCCc----ceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHH
Q 002191 683 ALLGEED----KNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (955)
Q Consensus 683 ~l~~~~~----~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~ 746 (955)
...++.. ...++.+ .+++|..+|+.++..|+ +.+|.+ +++++++|||++|+++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 104 NREGGKARVEGMSRELQL----EKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp HHC----------CEEEE----ECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred HhhcCCCcccccceEEEE----EcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 6655433 2334444 57889999999999999 455665 488999999999999888764
No 73
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.32 E-value=3.4e-11 Score=121.50 Aligned_cols=152 Identities=7% Similarity=0.078 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEE-EEecCCCCCCccCCCCCCCCchHH
Q 002191 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVV-SEIRRSDLEPYLGIHFPANDIPQA 289 (955)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~vi-aE~~~~~~~s~lg~~~p~~dip~~ 289 (955)
+...++.++...+.+ +.|++++++.+++.+++++|+||+.||.+++| ....+ ++...++. .+..+|. ..-
T Consensus 27 ~~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~ 97 (184)
T 3p01_A 27 AQMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGT---VNNWLNQ---DPL 97 (184)
T ss_dssp HHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSS---CCCCGGG---CHH
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCc---cCcccCC---CcH
Confidence 345567777788888 78999999999999999999999999999443 33333 23444433 2333442 234
Q ss_pred HHHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEe
Q 002191 290 ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (955)
Q Consensus 290 ~r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~ 369 (955)
....+..++..+|+|+...|- -++.+++...|++|.|++||+.+| ++||+|.+
T Consensus 98 ~~~~~~~~~~~~i~d~~~~~~-----------------------~~~~~~~~~~~~~s~l~vPL~~~~----~~~GvL~l 150 (184)
T 3p01_A 98 TNEAIATGQIQVAANIAKDPK-----------------------LASISQYQDNGIQSHVVIPITYRN----EMLGVLSL 150 (184)
T ss_dssp HHHHHHHCSCEEESCGGGCHH-----------------------HHTCHHHHHHTCCEEEEEEEEETT----EEEEEEEE
T ss_pred HHHHHhhCCeEEEeccccCcc-----------------------ccchhHHHHhCccEEEEEEEEECC----EEEEEEEe
Confidence 556678888889999775441 112456788999999999999998 99999999
Q ss_pred ecCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002191 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYM 398 (955)
Q Consensus 370 hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 398 (955)
|+..|+.|+.++..+++.++.++++.|+.
T Consensus 151 ~~~~~~~f~~~d~~ll~~lA~q~aiAi~n 179 (184)
T 3p01_A 151 QWQQPISLREDELTLIHLSAQLVAIALTS 179 (184)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77779999999999999999999988864
No 74
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.31 E-value=5.4e-12 Score=123.08 Aligned_cols=124 Identities=7% Similarity=0.051 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHH
Q 002191 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILL 821 (955)
Q Consensus 742 ~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l 821 (955)
.++++++..++.++++++. ||+++|.+|+|++||+++++++|++.++++|+++.+ +++ . ....+...+
T Consensus 15 ~~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~-~~p-------~-~~~~~~~~l 82 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILE-LFP-------E-SADYLKRKI 82 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHH-HSG-------G-GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHH-hcC-------C-hHHHHHHHH
Confidence 3567777888999999975 699999999999999999999999999999998663 443 2 344566667
Q ss_pred HhhhcCCCcce---------eeEEE---EcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHH
Q 002191 822 YQGITGQGTEN---------FPFGF---FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 877 (955)
Q Consensus 822 ~~~~~g~~~~~---------~e~~~---~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~ 877 (955)
.+++..+.+.. +++.. ...+|..+|..+++.|+.|.+|++.|++.+++|||+++.+
T Consensus 83 ~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 83 DTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp HHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred HHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 77776554321 11211 2356778899999999999999999999999999998764
No 75
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.28 E-value=7.2e-12 Score=116.11 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=91.3
Q ss_pred HHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeee
Q 002191 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700 (955)
Q Consensus 621 ~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~ 700 (955)
+.++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++++.......+.....++.. ..++.+
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 75 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHIL-TITSAGKMAEGEKILAELFAGKKE-SLPLSL---- 75 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHH-HHHCTTCHHHHHHHHHHHHHTCCS-EEEEEE----
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHH-HHcCchhHHHHHHHHHHHHhCCCc-eeEEEE----
Confidence 45789999999999999999999999999999999999999998 888888888777788887776655 555555
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHH
Q 002191 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748 (955)
Q Consensus 701 ~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se 748 (955)
.+++|..+|+.++..|..+ +...+++++++|||++|+++++...+.
T Consensus 76 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 76 EKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp ECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred EccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 5789999999999987664 335678999999999999998876543
No 76
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.28 E-value=8.6e-12 Score=121.85 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=82.0
Q ss_pred EEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhc
Q 002191 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRM 808 (955)
Q Consensus 729 ~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l 808 (955)
-+..|+++.++..+++.+.+..|+.++++++. +++++|.+|+++++|+++++++|++.++++|+.+.. +++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~-~~~----- 90 (167)
T 1v9y_A 20 HMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDM-LIP----- 90 (167)
T ss_dssp --------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGG-GSC-----
T ss_pred HHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhh-ccC-----
Confidence 34568888889999999999999999999875 599999999999999999999999999999987653 222
Q ss_pred cChhhHHHHHHHHHhhhcCCCc----ceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHh
Q 002191 809 KGQDMLTKFMILLYQGITGQGT----ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 883 (955)
Q Consensus 809 ~~~d~~~~~~~~l~~~~~g~~~----~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~ 883 (955)
++....+...+.....++.. +..++.+.+++|..+|+.++..|+ +.+|.+. ++++++|||++++.+.++++
T Consensus 91 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 91 --RDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp --GGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC-------------
T ss_pred --ccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHHHHh
Confidence 33222233344444444433 566888899999999999999999 5566664 89999999999988766543
No 77
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.27 E-value=2.3e-11 Score=134.97 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=103.9
Q ss_pred HHHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEe
Q 002191 622 RLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRK 698 (955)
Q Consensus 622 ~lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~ 698 (955)
.++++++++++++|. +|+|++||+++++++||+.++++|+++. .+.+++........+...+..+.....++.+
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-- 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN-- 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE--
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch-hhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE--
Confidence 467899999999999 9999999999999999999999999988 8888766665555666666666666666666
Q ss_pred eeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHH
Q 002191 699 FELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (955)
Q Consensus 699 ~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~ 746 (955)
.++||..+|+.++..|++|.+|.+.|++++++|||++|+.+++++.
T Consensus 92 --~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~~ 137 (332)
T 2wkq_A 92 --YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREG 137 (332)
T ss_dssp --ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHH
T ss_pred --EcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhccc
Confidence 7899999999999999999999999999999999999988877643
No 78
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.27 E-value=2.7e-11 Score=113.02 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=89.2
Q ss_pred ccccchHHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhh--cCCCccccccccccHHHHHHHHHH
Q 002191 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA--MGKSLIDEVVHEESQGAVENLICR 682 (955)
Q Consensus 605 ~l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eel--iG~~~~~~l~~~~~~~~~~~~l~~ 682 (955)
++++++++|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+++ +|+++. ++++ +...+...+..
T Consensus 4 ~r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~-~~~~--~~~~~~~~~~~ 80 (126)
T 3bwl_A 4 ERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEF-DLMF--DAEDVQTQLSG 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGT-BTTC--CHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchh-hccC--CHHHHHHHHHH
Confidence 356678889999999999999999999999999999999999999999999999 567766 6666 33333222221
Q ss_pred HHcCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 683 ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 683 ~l~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
.. .+....++..+ .++||..+|+.++..++.+ +|.. +++++++|||
T Consensus 81 ~~-~~~~~~~e~~~----~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 81 FS-VDERRKFEGLY----ERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp CC-TTCEEEEEEEE----ECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred Hh-cCCCcceEEEE----EeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 11 12222334333 6899999999998888753 4443 5678899998
No 79
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.27 E-value=2.9e-11 Score=134.06 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=98.3
Q ss_pred HHHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCc
Q 002191 754 IIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGT 830 (955)
Q Consensus 754 i~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~ 830 (955)
++++++ ++|+++|. +|+++++|+++++++||+.++++|+++.. +.++++.......+.+.+..+..
T Consensus 16 ~~~~~~---~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 2wkq_A 16 TLERIE---KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARF--------LQGPETDRATVRKIRDAIDNQTE 84 (332)
T ss_dssp CGGGCC---SEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHHHHHTTCC
T ss_pred HhhcCC---CcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchh--------hcCCCCCHHHHHHHHHHHHcCCe
Confidence 456665 46999999 99999999999999999999999998643 23344444445556666777778
Q ss_pred ceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHH
Q 002191 831 ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 881 (955)
Q Consensus 831 ~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~l 881 (955)
+..++++.+++|+.+|+..++.|++|.+|.+.|++++.+|||++++.+.+.
T Consensus 85 ~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 85 VTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhc
Confidence 889999999999999999999999999999999999999999999887654
No 80
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-11 Score=112.30 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=91.5
Q ss_pred HHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC-CCcce
Q 002191 754 IIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTEN 832 (955)
Q Consensus 754 i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g-~~~~~ 832 (955)
++++++ ++|+..|.+|+++++|+++++++||+.++++|+.+.+ +.+|++...+...+.+.+.+ +....
T Consensus 8 ~~~~~~---~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~--------~~~p~d~~~~~~~~~~~~~~~~~~~~ 76 (121)
T 2kdk_A 8 INVKPT---EFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYE--------YFHQDDHNNLTDKHKAVLQSKEKILT 76 (121)
T ss_dssp CCCCSS---EEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTT--------TBCSSSHHHHHHHHHHHHTSSSCEEE
T ss_pred cccCCc---cEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHH--------eeCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 344444 3599999999999999999999999999999997553 45678877777777776664 44567
Q ss_pred eeEEEEcCCCcEEEEEEEEeeeeCCC-CCEEEEEEEEeccCccc
Q 002191 833 FPFGFFNRQGQFVEVALTASRRTDAE-GKVIGCFCFMQILVPDL 875 (955)
Q Consensus 833 ~e~~~~~~dG~~~~v~~~~~pi~d~~-G~v~g~v~i~~DITerk 875 (955)
.++++++++|+.+|+..+..|++|.. |.+..++++.+|||+.+
T Consensus 77 ~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 77 DSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 89999999999999999999999886 56777899999999864
No 81
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.25 E-value=2.3e-11 Score=112.57 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcC-CCcceEEEEEEeee
Q 002191 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EEDKNVELKLRKFE 700 (955)
Q Consensus 622 ~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~-~~~~~~e~~~~~~~ 700 (955)
.++++++++++.+|.+|+++++|+++++++||++++++|+++. ++++|++...+...+...+.+ +.....++++
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~---- 81 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCY-EYFHQDDHNNLTDKHKAVLQSKEKILTDSYKF---- 81 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTT-TTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEE----
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhCCCCCccEEEEE----
Confidence 3567889999999999999999999999999999999999988 899999988887777777764 3334566666
Q ss_pred eccCCcEEEEEEEEEEeecCC-CCEEEEEEEEecchHhH
Q 002191 701 LQKQHSVVYILVNACTSRDYK-NNVKGVCFVGQDITHEK 738 (955)
Q Consensus 701 ~~~dG~~~~v~v~~~pi~d~~-g~v~gvv~v~~DITerk 738 (955)
.++||..+|+.++..|++|.. +.+.+++++.+||++.+
T Consensus 82 ~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 82 RAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp ECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 789999999999999999875 56777889999998754
No 82
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.21 E-value=5.3e-11 Score=125.12 Aligned_cols=155 Identities=10% Similarity=0.125 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHh------------CCChhhhccCCccchhcccchhccChhhHH
Q 002191 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVT------------GWMRHEVIGKMLPREIFGNFCRMKGQDMLT 815 (955)
Q Consensus 748 e~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~------------G~~~eeviGk~~~~~~~~~~~~l~~~d~~~ 815 (955)
..+++.++++++. +|+++|.+|+|+++|+++++++ ||+.++++|+++.. +++ .++...
T Consensus 21 ~~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~-~~~------~~~~~~ 90 (233)
T 3vol_A 21 MARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV-FHK------NPAHQR 90 (233)
T ss_dssp HHHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGG-GSS------SHHHHH
T ss_pred HHHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHH-HcC------CHHHHH
Confidence 3567788998864 6999999999999999999998 89999999998643 222 122221
Q ss_pred HHHHHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHhHHHHHHH-----
Q 002191 816 KFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIY----- 890 (955)
Q Consensus 816 ~~~~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~~aE~~~~----- 890 (955)
. +.+...+ .+..++. .+| .|+.++++|++|.+|++.|++++++|||++++.+.+++...+.+..
T Consensus 91 ~----~~~~~~~--~~~~~~~---~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~~gdl~~ 159 (233)
T 3vol_A 91 H----LLANLTG--VHKAELN---LGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAAAGDFSK 159 (233)
T ss_dssp H----HHHTCCS--CEEEEEE---ETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCC----
T ss_pred H----HHHhccc--ceeEEEE---ECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHhCCcccc
Confidence 1 2222222 3333332 345 3778999999999999999999999999999999887766555442
Q ss_pred -----HHHHHHHHHHHHhhh-------HhHhHHHHHHHhccCCCC
Q 002191 891 -----AKIKELAYIRQEVKN-------PLNGIRFVHKLLESSSIS 923 (955)
Q Consensus 891 -----ak~~fla~iSHELRn-------PL~~I~g~~~LL~~~~l~ 923 (955)
.+..|+..|...+++ ||+.+.....-+...+++
T Consensus 160 ri~~~~~~~~~~~l~~~ln~l~~~~~~~l~~i~~~~~~~a~GdLt 204 (233)
T 3vol_A 160 RVEEAGKEGFFLRLAKDLNSLVDTADRGLRDVSRMLGALAQGDLT 204 (233)
T ss_dssp ---------------------------------------------
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 344555555554443 444444444434333333
No 83
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.19 E-value=1.3e-11 Score=124.58 Aligned_cols=123 Identities=9% Similarity=0.090 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeeec-CCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHh
Q 002191 745 IRLQGDYEAIIQSVNPLIPPIFASD-ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (955)
Q Consensus 745 ~~se~~lr~i~e~~~~~id~I~~~D-~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (955)
..++++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+.+.+ ++++ .....+...+.+
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~-~~~~-------~~~~~~~~~~~~ 99 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPARE-VYPE-------LEGQQIYEMLDR 99 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHH-HCTT-------SCSSSSHHHHHH
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHH-HCCc-------hhhhhHHHHHHH
Confidence 3556789999999975 599999 9999999999999999999 899998653 3332 111112334455
Q ss_pred hhcCCCcceee-EEE--EcCC--CcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHH
Q 002191 824 GITGQGTENFP-FGF--FNRQ--GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 880 (955)
Q Consensus 824 ~~~g~~~~~~e-~~~--~~~d--G~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~ 880 (955)
++..+.....+ +.+ .+++ |..+|+.++..|+.+.+|.+.|++++++|||++|++|.+
T Consensus 100 ~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 100 VYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 55434343332 333 2222 778999999999999999999999999999999988755
No 84
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.19 E-value=9e-11 Score=107.35 Aligned_cols=111 Identities=8% Similarity=0.020 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceE
Q 002191 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (955)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 692 (955)
+++..+.++.++++++++++++|.+|+|+++|+++++++||++++++|+++. ++.++..... +..... +....+
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~-~~~~~~~~~~----~~~~~~-~~~~~~ 81 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQ-DIDVDFALHD----WEEIRQ-KNNYTF 81 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGG-GTBTTGGGSC----HHHHHH-HSEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChh-hcccccCHHH----HHHHHh-cCcEEE
Confidence 3444556788999999999999999999999999999999999999999987 7765543332 222222 223344
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
+..+ .+++|..+|+.++..|+.+.++ .+++++++|||
T Consensus 82 e~~~----~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 82 KTRY----RSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp EEEE----ECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred EEEE----EccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 4444 6889999999999999886543 35678999997
No 85
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.19 E-value=4.3e-11 Score=110.77 Aligned_cols=116 Identities=10% Similarity=0.152 Sum_probs=85.7
Q ss_pred HHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcc
Q 002191 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (955)
Q Consensus 752 r~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~ 831 (955)
+.++++++. +++++|.+|+++++|+++++++|++.++++|+.+.+ +.++++...+...+.....++..
T Consensus 2 ~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~- 69 (126)
T 3mjq_A 2 KNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHILT--------ITSAGKMAEGEKILAELFAGKKE- 69 (126)
T ss_dssp CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHH--------HHCTTCHHHHHHHHHHHHHTCCS-
T ss_pred hhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHH--------HcCchhHHHHHHHHHHHHhCCCc-
Confidence 456777764 599999999999999999999999999999997653 23355555566667777766644
Q ss_pred eeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHH
Q 002191 832 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 881 (955)
Q Consensus 832 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~l 881 (955)
..++++.+++|..+|+..+..|..+. ...+++++++|||++|+++.+.
T Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 70 SLPLSLEKKEGTSIPAKARIWQGKWH--NEPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEESS--SSEEEEEEEEECC---------
T ss_pred eeEEEEEccCCCEEEEEEEEEeeeEC--CceEEEEEEEechHHHHhhccc
Confidence 78888999999999999999877653 3567899999999999887654
No 86
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.18 E-value=5.1e-10 Score=112.39 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=115.5
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCC-------CCCccCCCCCCCC
Q 002191 214 KLAVSAISRL-QALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD-------LEPYLGIHFPAND 285 (955)
Q Consensus 214 ~~~~~~~~~l-~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~-------~~s~lg~~~p~~d 285 (955)
.++..+...+ .+ +.|++++++.+++.+++++|+||+.||-+++|+..-+..-..... .......++|...
T Consensus 13 ~~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (189)
T 2zmf_A 13 DFLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK 90 (189)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc
Confidence 3444555443 55 579999999999999999999999999999998766554332211 1112223344333
Q ss_pred chHHHHHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeE
Q 002191 286 IPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWG 365 (955)
Q Consensus 286 ip~~~r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWG 365 (955)
.-....+..++...|+|+...|. .+.+......+++++.|++||+.+| ++||
T Consensus 91 --~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~~----~~~G 142 (189)
T 2zmf_A 91 --GIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSRG----SVIG 142 (189)
T ss_dssp --HHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEETT----EEEE
T ss_pred --cHHHHHHHhCCeEEEeccccccc----------------------ccccchhhcccccceEEEeeecccC----ceee
Confidence 12345577888889998776543 2445667888999999999999998 9999
Q ss_pred EEEeecCC-CCCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 366 LVVCHHTS-PRYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 366 ll~~hh~~-pr~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
.|.++++. |+.|+.+...+++.++.++++.|+.+
T Consensus 143 vl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~na 177 (189)
T 2zmf_A 143 VVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp EEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99887664 89999999999999999998888644
No 87
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.18 E-value=6e-12 Score=151.61 Aligned_cols=118 Identities=8% Similarity=-0.096 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCC
Q 002191 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (955)
Q Consensus 749 ~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~ 828 (955)
.+++.++++++. +|+++|.+|+|++||+++++++||+.++++|+.... ..++++...+.........|
T Consensus 518 ~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~--------~~~~~~~~~~~~i~~~l~~g- 585 (635)
T 4eho_A 518 PQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLA--------GFFVESNDFLRNVAELIDHG- 585 (635)
T ss_dssp SSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGT--------TSSSSCTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhh--------ccCCCCHHHHHHHHHHHHcC-
Confidence 357778888764 599999999999999999999999999999987543 33455555555444444444
Q ss_pred CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHH
Q 002191 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 878 (955)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e 878 (955)
..+..|++++++||+.+|+.+++.|++|.+|+++|++++.+|||+||++|
T Consensus 586 ~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 586 RGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred CcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 47889999999999999999999999999999999999999999999764
No 88
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.16 E-value=2.1e-10 Score=120.47 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHh------------CCCchhhcCCCccccccccccHHHHHHHHHHHH
Q 002191 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELT------------GLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684 (955)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~------------G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l 684 (955)
..++..++++++++++++|.+|+|+++|+++++++ ||++++++|+++. .+.+.. ......+.. +
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~~~--~~~~~~~~~-~ 96 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNP--AHQRHLLAN-L 96 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSSSH--HHHHHHHHT-C
T ss_pred HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcCCH--HHHHHHHHh-c
Confidence 35678899999999999999999999999999998 8999999999987 555431 222222221 2
Q ss_pred cCCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002191 685 LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764 (955)
Q Consensus 685 ~~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~id~ 764 (955)
. .. ....+ ..+| .|+.++..|++|.+|++.|++++++|||++++++++++...+. +..
T Consensus 97 ~--~~--~~~~~-----~~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a---~~~-------- 154 (233)
T 3vol_A 97 T--GV--HKAEL-----NLGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQA---AAA-------- 154 (233)
T ss_dssp C--SC--EEEEE-----EETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHH---HHC--------
T ss_pred c--cc--eeEEE-----EECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHH---HhC--------
Confidence 1 12 22222 1234 4779999999999999999999999999999998877654332 111
Q ss_pred eeeecCCCcEe-eecHHHHHHhCCChhhhccC
Q 002191 765 IFASDENACCS-EWNAAMEKVTGWMRHEVIGK 795 (955)
Q Consensus 765 I~~~D~~g~i~-~~N~a~~~l~G~~~eeviGk 795 (955)
-|..+++. ..|..+..-+|+...++++.
T Consensus 155 ---gdl~~ri~~~~~~~~~~~l~~~ln~l~~~ 183 (233)
T 3vol_A 155 ---GDFSKRVEEAGKEGFFLRLAKDLNSLVDT 183 (233)
T ss_dssp ---C----------------------------
T ss_pred ---CcccccccccccchHHHHHHHHHHHHHHH
Confidence 13456665 45677777777777777665
No 89
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.11 E-value=5.7e-10 Score=99.11 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=83.1
Q ss_pred CeeeecC---CCcEeeecHHHHHHhCCChhhhccCCc-cchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEc
Q 002191 764 PIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKML-PREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFN 839 (955)
Q Consensus 764 ~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~-~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~ 839 (955)
+++++|. +|+++++|+++++++|++.++++|+.. ...+.+ ++....+...+.+.+.++..+..++.+.+
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG-------PCTQRRAAAQIAQALLGAEERKVEIAFYR 75 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCC-------TTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccC-------CcCCHHHHHHHHHHHhcCCCceEEEEEEc
Confidence 5788886 599999999999999999999999972 432222 22222233445555566667788888899
Q ss_pred CCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcc
Q 002191 840 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (955)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (955)
++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 76 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 76 KDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp TTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 99999999999999999999999999999999975
No 90
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.10 E-value=2.1e-10 Score=104.83 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHH
Q 002191 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLY 822 (955)
Q Consensus 743 ~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~ 822 (955)
++++..+.++.++++++. +|+++|.+|+++++|+++++++||+.++++|+.+.+ +++... ++. ...+
T Consensus 7 ~~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~-~~~~~~----~~~----~~~~- 73 (118)
T 3olo_A 7 QSELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQD-IDVDFA----LHD----WEEI- 73 (118)
T ss_dssp CHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGG-TBTTGG----GSC----HHHH-
T ss_pred HHHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhh-cccccC----HHH----HHHH-
Confidence 344455667889999875 599999999999999999999999999999998654 232111 111 1111
Q ss_pred hhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 823 QGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 823 ~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
.. +....++.++.+++|+.+|+.++..|+.+.++ .+++++++|||
T Consensus 74 --~~-~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 74 --RQ-KNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp --HH-HSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred --Hh-cCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 12 23667888999999999999999999876543 35778999997
No 91
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.10 E-value=8.4e-10 Score=102.81 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=92.5
Q ss_pred HHHHHHhcCccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCCc-cccccccccHHHHHHHHHHHHcCCCcceEEEE
Q 002191 620 MVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSL-IDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (955)
Q Consensus 620 l~~lie~~~~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~~-~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 695 (955)
+...+++++++++++|. +|+|+++|+++++++|++.++++|+++ ...+.+++........+...+..+.....++.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45667789999999999 999999999999999999999999983 42555555555555556666665555555555
Q ss_pred EEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHh
Q 002191 696 LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (955)
Q Consensus 696 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 737 (955)
. .+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 F----YRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp E----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred E----ECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 4 5789999999999999999999999999999999974
No 92
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.09 E-value=9.3e-10 Score=102.52 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=89.3
Q ss_pred HHHHhcCCCCCCeeeecC---CCcEeeecHHHHHHhCCChhhhccCCc-cchhcccchhccChhhHHHHHHHHHhhhcCC
Q 002191 753 AIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGKML-PREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (955)
Q Consensus 753 ~i~e~~~~~id~I~~~D~---~g~i~~~N~a~~~l~G~~~eeviGk~~-~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~ 828 (955)
..+++++ ++++++|. +|+++++|+++++++|++.++++|+.+ ...+.. ++....+...+...+..+
T Consensus 23 ~~~~~~~---~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 92 (138)
T 2l0w_A 23 RKFEGQS---RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG-------PRTQRRAAAQIAQALLGA 92 (138)
T ss_dssp HHHTTTT---SEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCC-------TTCCHHHHHHHHHHTTCS
T ss_pred HHHhcCC---CCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCC-------cccchhHHHHHHHHHhhc
Confidence 3445455 46999999 999999999999999999999999973 432222 233233344555666666
Q ss_pred CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcc
Q 002191 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (955)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (955)
..+..++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 93 EERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred CCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 6778888889999999999999999999999999999999999974
No 93
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.08 E-value=9.3e-11 Score=108.61 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEE
Q 002191 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (955)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 695 (955)
.+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++. ++++++...............+... .
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~ 91 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLS-AVMDSEAANQRLEAGKSAVENGTAT----R 91 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGG-GSSCHHHHHHHHHHHHHHHHHTSCE----E
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHH-HhCCHHHHHHHHHHHHHHhcCCCeE----E
Confidence 6778999999999999999999999999999999999999999999998 7775544444444444454444321 1
Q ss_pred EEeeeeccCCc-EEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 696 LRKFELQKQHS-VVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 696 ~~~~~~~~dG~-~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
. .+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 92 ~------~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 92 S------EDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp E------EEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred e------EcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 1 2344 68999999998765 66678999999998
No 94
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.08 E-value=3e-09 Score=104.60 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=119.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhC
Q 002191 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQN 297 (955)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~ 297 (955)
++...+.+ +.+++++++.+++.+++++|+||+.||-++++...-.+.-+..+.-....+..||-.+-..-....+..+
T Consensus 6 ~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T 3oov_A 6 QISSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDR 83 (169)
T ss_dssp CHHHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHT
T ss_pred HHHHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcC
Confidence 34455555 6799999999999999999999999999999876655555555444445566676544455666778889
Q ss_pred CEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCC-CC
Q 002191 298 RVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP-RY 376 (955)
Q Consensus 298 ~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~p-r~ 376 (955)
+..+|.|+...|-..-+.+ ..+++...++++.+++||+.+| +++|+|.+++..+ +.
T Consensus 84 ~~~~i~d~~~~~~~~~~~~-------------------~~~~~~~~~~~s~l~vPl~~~~----~~iGvl~~~~~~~~~~ 140 (169)
T 3oov_A 84 QVYMIDDVSAYPTDFRLQS-------------------PYDAIRALRSKSFVICPIVVKG----EAIGVFAVDNRSSRRS 140 (169)
T ss_dssp CCEEESCGGGSCGGGSCCT-------------------TGGGCGGGCCSSEEEEEEEETT----EEEEEEEEECTTSSSC
T ss_pred CCEEeccccchhhhhhccc-------------------cHHHHHhcCcCcEEEEEEEeCC----cEEEEEEEEccccCCC
Confidence 9999998776543111000 0234667899999999999988 9999999999875 55
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 002191 377 IPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 377 ~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
|+.+...+++.++.+++..|+.+
T Consensus 141 f~~~d~~~l~~~a~~~a~ai~na 163 (169)
T 3oov_A 141 LNDTDVDTIKLFADQASSAIVRI 163 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888643
No 95
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.06 E-value=6.7e-09 Score=103.21 Aligned_cols=160 Identities=12% Similarity=0.073 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEE-EecCCCC-CCccCCCCCCCCchHHH
Q 002191 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS-EIRRSDL-EPYLGIHFPANDIPQAA 290 (955)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~via-E~~~~~~-~s~lg~~~p~~dip~~~ 290 (955)
.+++.++...|.+ +.|++++++.+++.+++++|+||+.||-+++|+..-.+. ....... ....+..+|..+- -+
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGT--WL 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTS--GG
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCcccc--HH
Confidence 4566777788887 789999999999999999999999999999988766553 2212121 1122233332221 11
Q ss_pred HHHHHhCCEEEeecCCC-CCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEe
Q 002191 291 RFLFKQNRVRMICDCHA-IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (955)
Q Consensus 291 r~ly~~~~~r~i~d~~~-~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~ 369 (955)
...+..+.+.++ |... .+. .+ ...++..+.+...|++|.|++||+.+| +++|.|.+
T Consensus 81 ~~v~~~~~~~~~-d~~~~~~~--~~----------------~~~~~~~~~~~~~~~~s~l~vPL~~~~----~~iGvL~l 137 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDIPS--FG----------------ADGAPLLWTLHELGMRQIVLSPLRSGG----RVIGFLSF 137 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTCTT--TT----------------TTTCHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEE
T ss_pred HHHhccCCceEe-chhhcccc--cC----------------CcchhHHHHHHHcCceEEEEEEEEECC----EEEEEEEE
Confidence 233445566555 6554 211 00 001234466889999999999999998 99999999
Q ss_pred ecCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 370 hh~~pr~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
+++.|+.|+.+...+++.++.++++.|+.+
T Consensus 138 ~~~~~~~f~~~d~~ll~~lA~~~a~Ai~na 167 (177)
T 3k2n_A 138 VSAEEKLWSDGDKSLLSGVSSSIAIAVSNA 167 (177)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888654
No 96
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.06 E-value=5.1e-09 Score=103.15 Aligned_cols=158 Identities=11% Similarity=0.067 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHH
Q 002191 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (955)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~ 290 (955)
+.+..+.++...+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-++.-+...+-+..-...+|..+ .-.
T Consensus 5 ~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~ 80 (171)
T 3trc_A 5 NMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GLI 80 (171)
T ss_dssp HHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HHH
T ss_pred HHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Chh
Confidence 445666777778887 6799999999999999999999999999999875444443333222222223455443 334
Q ss_pred HHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEee
Q 002191 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH 370 (955)
Q Consensus 291 r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~h 370 (955)
...+..++..+++|+...|-.. . .+ .+...++++.+++||+.+| +++|.|.+.
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~------------------~-~~----~~~~~~~~s~l~vPl~~~~----~~~Gvl~~~ 133 (171)
T 3trc_A 81 GLVGEREEPINLADAPLHPAYK------------------H-RP----ELGEEDYHGFLGIPIIEQG----ELLGILVIQ 133 (171)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC------------------C-CG----GGCCCCCCEEEEEEEEETT----EEEEEEEEE
T ss_pred hHHHhcCCeEEeCCCCCCCccc------------------c-cc----cCCcccccEEEEEeEEECC----EEEEEEEEe
Confidence 5667788888888876543210 0 01 1245789999999999998 999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 371 HTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 371 h~~pr~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
+..|+.|+.+...+++.++.+++..|+.+
T Consensus 134 ~~~~~~f~~~d~~~l~~la~~~a~ai~~a 162 (171)
T 3trc_A 134 QLESHHFAEEEEAFCVTLAIHLAAEIAHA 162 (171)
T ss_dssp ESSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887643
No 97
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.04 E-value=2.1e-09 Score=95.30 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=82.8
Q ss_pred ccEEEEcC---CCcEeeecHHHHHHhCCCchhhcCCC-ccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccC
Q 002191 629 APIFGVDS---SGTINGWNAKVAELTGLPASEAMGKS-LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704 (955)
Q Consensus 629 ~~I~~~D~---dg~i~~~N~~~~~l~G~~~eeliG~~-~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~d 704 (955)
.+++++|. +|+|+++|+++++++|++.++++|++ +...+.+++........+...+..+.....++.+ .+++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 77 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAF----YRKD 77 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE----ECTT
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEE----EcCC
Confidence 57888886 59999999999999999999999998 2414444444444444555555555555555555 5789
Q ss_pred CcEEEEEEEEEEeecCCCCEEEEEEEEecchHh
Q 002191 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (955)
Q Consensus 705 G~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 737 (955)
|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 78 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 78 GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp SCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 999999999999999999999999999999974
No 98
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.03 E-value=5e-10 Score=109.06 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEeeecHH---HHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEE
Q 002191 618 CEMVRLIETATAPIFGVDSSGTINGWNAK---VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (955)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~i~~~N~~---~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 694 (955)
+++..++++++++|+++|.+|+|+++|++ ++++|| ..++++|+++. ++.++...+.+...+. .+..+.....++
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~-~~~~~~~~~~v~~i~~-~l~~g~~~~~~~ 95 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVE-LCHPPKVLDKVKKVFE-LLRNGQRDKVNM 95 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGG-GSSCHHHHHHHHHHHH-HHHTTSBSEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHH-HhCCHHHHHHHHHHHH-HHHcCCccEEEE
Confidence 45789999999999999999999999999 999999 56789999998 7665444333333433 344444444444
Q ss_pred EEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHH
Q 002191 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748 (955)
Q Consensus 695 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se 748 (955)
.+ ...+...++.++..|++|.+|+++|++.+++|||+.++.+++.++-+
T Consensus 96 ~~-----~~~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 96 WF-----QSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EE-----EETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred EE-----ecCCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 33 11221256889999999999999999999999999998887765543
No 99
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.02 E-value=5e-09 Score=104.13 Aligned_cols=150 Identities=10% Similarity=0.021 Sum_probs=108.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHH
Q 002191 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFK 295 (955)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 295 (955)
+..+...+.+ +.+++++++.+++.+.+++|+|++.||.+++++. .+.+ +...+-+..-+..+|..+- -....+.
T Consensus 17 l~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (181)
T 3e0y_A 17 LEEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDG--ITGSVAR 90 (181)
T ss_dssp HHHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTS--SHHHHHH
T ss_pred HHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCC--eeeehhh
Confidence 3455667776 6799999999999999999999999999999877 3333 3322222222334443321 1345567
Q ss_pred hCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCC
Q 002191 296 QNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR 375 (955)
Q Consensus 296 ~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr 375 (955)
.++..+|+|+...|-. .+...+...|+++.+++||+.+| +++|.|.+++..|+
T Consensus 91 ~~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~----~~iGvl~~~~~~~~ 143 (181)
T 3e0y_A 91 DGQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDKK----EVYGVINLNTTSIR 143 (181)
T ss_dssp HCCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECSS----CEEEEEEEEESSCC
T ss_pred cCCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeCC----eEEEEEEEeeCCCC
Confidence 7888888997764431 01122446799999999999888 99999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHH
Q 002191 376 YIPFPLRYACEFLVQAFSLQLYM 398 (955)
Q Consensus 376 ~~~~~~r~~~~~l~~~~~~~l~~ 398 (955)
.|+.....+++.++.+++..|..
T Consensus 144 ~f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 144 SFHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988864
No 100
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.02 E-value=1.4e-08 Score=99.32 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHH
Q 002191 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARF 292 (955)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ 292 (955)
+..+.++...+.+ +.+++++++.+++.+.+++|+|++.||-++++...-.+.-+...+-...-+..+|..+ .-...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE--GLVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS--HHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC--Ceehh
Confidence 4455667777777 6799999999999999999999999999999865544444433332223334555432 24556
Q ss_pred HHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC
Q 002191 293 LFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (955)
Q Consensus 293 ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~ 372 (955)
.+..++..++.|+...|-. .+...+...|+++.+++||+.+| +++|.|.+.+.
T Consensus 85 ~~~~~~~~~~~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~----~~~Gvl~l~~~ 137 (171)
T 3ci6_A 85 VGQREEIVNLENASKHERF-----------------------AYLPETGEEIYNSFLGVPVMYRR----KVMGVLVVQNK 137 (171)
T ss_dssp HHHHTSCEEESSGGGSTTC--------------------------------CCCEEEEEEEEETT----EEEEEEEEEES
T ss_pred hhccCceEEecCCCcCcch-----------------------hccccccccccceEEEEeEEECC----EEEEEEEEecC
Confidence 6778888888887644320 01111366789999999999888 99999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHH
Q 002191 373 SPRYIPFPLRYACEFLVQAFSLQLYM 398 (955)
Q Consensus 373 ~pr~~~~~~r~~~~~l~~~~~~~l~~ 398 (955)
.++.|+...+.+++.++.+++..|+.
T Consensus 138 ~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 138 QPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888864
No 101
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.01 E-value=3.6e-09 Score=105.80 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEeecCCC
Q 002191 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307 (955)
Q Consensus 228 ~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~ 307 (955)
+.+++++++.+++.+.+++|+|++.||.+++++.-.+++-.-.+.-..--....|..+ -.+...+..++..+++|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999965555555554332221100112333122 24556678888889988764
Q ss_pred CCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCc-eeEEEEeec-CCCCCCChhHHHHH
Q 002191 308 IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK-LWGLVVCHH-TSPRYIPFPLRYAC 385 (955)
Q Consensus 308 ~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~-LWGll~~hh-~~pr~~~~~~r~~~ 385 (955)
.+ .+...+++...|+++.+++||..++ + +||.|.+++ ..|+.++.+...++
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~~----~~~~GvL~l~~~~~~~~f~~~d~~lL 145 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRKG----EPPFGILSVFSRTIVGLFNEPFLNLL 145 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCTT----SCCCEEEEEEESSCSSCCCHHHHHHH
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeCC----CeEEEEEEEecCCCCCCCCHHHHHHH
Confidence 33 2556778888999999999999887 8 999999999 66999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002191 386 EFLVQAFSLQLYME 399 (955)
Q Consensus 386 ~~l~~~~~~~l~~~ 399 (955)
+.++.+++..|+..
T Consensus 146 ~~la~~~a~al~~a 159 (181)
T 2qyb_A 146 ESLAGQLAQAVKIV 159 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988755
No 102
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.01 E-value=9.4e-10 Score=104.12 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCC-------cc
Q 002191 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-------DK 690 (955)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~-------~~ 690 (955)
..+..++++++++|+++|.+|+|+++|++++++|||+.++++|+++. +++++++.......+......+. ..
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWR-NFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGG-GGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHH-HHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 45788999999999999999999999999999999999999999998 88887665443333322222111 11
Q ss_pred eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchH
Q 002191 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736 (955)
Q Consensus 691 ~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITe 736 (955)
..++.+ .++||+.+|+.++..|+.+ ++.. ++++++|...
T Consensus 86 ~~E~~~----~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~~ 124 (129)
T 3mfx_A 86 AQETTL----ICASGKAKDVELSISYIPG--HEPM-FVMVMHDLEH 124 (129)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC--
T ss_pred ceEEEE----EcCCCCEEEEEEEEEEecC--CCcE-EEEEEechhh
Confidence 234444 7899999999999999983 3333 4677778653
No 103
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=6.7e-10 Score=124.61 Aligned_cols=109 Identities=8% Similarity=0.024 Sum_probs=98.3
Q ss_pred CccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCcE
Q 002191 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707 (955)
Q Consensus 628 ~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~~ 707 (955)
...++..|.+|+++++|+++..++||+++|++|+++. +++||++.+.+...+..++..+.....++++ ++++|.+
T Consensus 251 ~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~----~~kdG~~ 325 (361)
T 4f3l_A 251 EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY-DYYHVDDLENLAKCHEHLMQYGKGKSCYYRF----LTKGQQW 325 (361)
T ss_dssp CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGG-GGBCHHHHHHHHHHHHHHHHHSEEECCCEEE----ECTTSEE
T ss_pred ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHH-HeECHHHHHHHHHHHHHHHhCCCcceEEEEE----EecCCCE
Confidence 4567888999999999999999999999999999998 9999999998888888888766666667777 7899999
Q ss_pred EEEEEEEEEeecC-CCCEEEEEEEEecchHhHHHH
Q 002191 708 VYILVNACTSRDY-KNNVKGVCFVGQDITHEKVLM 741 (955)
Q Consensus 708 ~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ae 741 (955)
+|+..++.+++|. +|++.+++++.+|||+++..+
T Consensus 326 vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 326 IWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 9999999999998 899999999999999998654
No 104
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.99 E-value=1.5e-09 Score=99.84 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=71.1
Q ss_pred HHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeee
Q 002191 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701 (955)
Q Consensus 622 ~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~ 701 (955)
.++++++++|+++|.+|+|+|+|+++++++||+++|++|+++. +++||++.+.+...+. ........++++ .
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~-~~ihp~D~~~~~~~~~---~~~~~~~~e~r~----~ 74 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLK-TFLHEEDQFLVESYFY---NEHHLMPCTFRF----I 74 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHH---CSCCSSCEEEEE----E
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHH-HeECHhHHHHHHHHHh---ccCCCccEEEEE----E
Confidence 4789999999999999999999999999999999999999998 9999999887765543 223334556666 7
Q ss_pred ccCCcEEEEEEEEEEeecCCCC
Q 002191 702 QKQHSVVYILVNACTSRDYKNN 723 (955)
Q Consensus 702 ~~dG~~~~v~v~~~pi~d~~g~ 723 (955)
++||+.+|+.++..++++..+.
T Consensus 75 ~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 75 KKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp CTTSCEEEEEEEEEEC------
T ss_pred cCCCCEEEEEEEEEEEecccCC
Confidence 8999999999999999887553
No 105
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=1.1e-09 Score=124.01 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=93.8
Q ss_pred cCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCC-cceEEEEEEeeeeccCC
Q 002191 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-DKNVELKLRKFELQKQH 705 (955)
Q Consensus 627 ~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~-~~~~e~~~~~~~~~~dG 705 (955)
..+.++..|.+|+++++|+++..++||+++|++|+++. +++||++.+.+...+..++.++. ....++++ +++||
T Consensus 277 ~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~----~~kdG 351 (387)
T 4f3l_B 277 SMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY-EYFHQDDIGHLAECHRQVLQTREKITTNCYKF----KIKDG 351 (387)
T ss_dssp CCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG-GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEE----ECTTS
T ss_pred CceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEE----EccCC
Confidence 45678889999999999999999999999999999999 99999999999999888886543 34567777 78999
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEecchHhHH
Q 002191 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (955)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ 739 (955)
.++|+..+..+++|. +|++.+++++.+|||+||+
T Consensus 352 ~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 352 SFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp CEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred CEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 999999999999997 8899999999999999984
No 106
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.99 E-value=2e-09 Score=103.37 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCeeeec---CCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhh-----------HHHHHHHHHhhhcCC
Q 002191 763 PPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDM-----------LTKFMILLYQGITGQ 828 (955)
Q Consensus 763 d~I~~~D---~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~-----------~~~~~~~l~~~~~g~ 828 (955)
++|+++| .+|+|+++|+++++++||+.++++|+.+.. +++ ++. .......+.+.+..+
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~-l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRF-LQS-------PDGMVKPKSTRKYVDSNTINTMRKAIDRN 107 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-GGS-------TTSCCCTTCCCSSSCHHHHHHHHHHHHHT
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhH-hCC-------ccccccccccccccChHHHHHHHHHHHCC
Confidence 4699998 799999999999999999999999998643 222 221 222333444555555
Q ss_pred CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEec
Q 002191 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQI 870 (955)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~D 870 (955)
..+..++++.+++|+.+|+.++..|+++.+|++.+++++++|
T Consensus 108 ~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 108 AEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp CCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred CceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 578888999999999999999999999999999999999877
No 107
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.98 E-value=4.4e-09 Score=97.81 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhC------------CCchhhcCCCccccccccccHHHHHHHHHHHHc
Q 002191 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG------------LPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (955)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G------------~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~ 685 (955)
.+++.+++++++||+++|.+|+|+++|+++++++| ++.++++|+++. ++.+.. ......+.. ..
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~~--~~~~~~~~~-~~ 80 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNP--AHQRHLLAN-LT 80 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSSH--HHHHHHHHH-CS
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCCH--HHHHHHHhC-cC
Confidence 56889999999999999999999999999999996 899999999987 665432 222222222 11
Q ss_pred CCCcceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHh
Q 002191 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (955)
Q Consensus 686 ~~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 737 (955)
... +..+. .+|. ++.++..|++|.+|++.|++++++|||++
T Consensus 81 --~~~--~~~~~-----~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 81 --GVH--KAELN-----LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp --SCE--EEEEE-----ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred --CCc--EEEEE-----ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 222 22221 1343 56889999999999999999999999984
No 108
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.97 E-value=8.4e-09 Score=103.58 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC-------CC-CCccCCCCC
Q 002191 212 SQKLAVSAISRLQALPG-GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-------DL-EPYLGIHFP 282 (955)
Q Consensus 212 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~-------~~-~s~lg~~~p 282 (955)
....+.++...+.+ + .|++++++.+++.+++++|+|++.||-++++...-++ ..... .+ +...+.++|
T Consensus 11 ~~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (189)
T 2e4s_A 11 LNDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYS-DLFDIGEEKEGKPVFKKTKEIRFS 87 (189)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEE-EEEEEEEEETTEEEEEECCCCEEE
T ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEE-EEeccCccccccccccCCcceEee
Confidence 34455566666655 4 4999999999999999999999999999998654332 21110 01 123455555
Q ss_pred CCCchHHHHHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCc
Q 002191 283 ANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK 362 (955)
Q Consensus 283 ~~dip~~~r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~ 362 (955)
... .-+...+..+...+|+|+...|- -+.+.......++++.|++||+.+| +
T Consensus 88 ~~~--~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~~----~ 139 (189)
T 2e4s_A 88 IEK--GIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSRG----S 139 (189)
T ss_dssp TTS--HHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEETT----E
T ss_pred CCC--cHHHHHHHhCCEEEecCCCcCcc----------------------cChhhccccCCccceEEEEEeccCC----e
Confidence 442 33556678888889988765432 1234456678999999999999988 9
Q ss_pred eeEEEEeecCCCC-CCChhHHHHHHHHHHHHHHHHHHH
Q 002191 363 LWGLVVCHHTSPR-YIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 363 LWGll~~hh~~pr-~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
++|.|.++++.++ .|+.+...+++.++.++++.|+.+
T Consensus 140 ~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na 177 (189)
T 2e4s_A 140 VIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp EEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999866 899999999999999999888654
No 109
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.96 E-value=2.4e-09 Score=98.42 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=69.5
Q ss_pred HHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcce
Q 002191 753 AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTEN 832 (955)
Q Consensus 753 ~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~ 832 (955)
.++++++. +|+++|.+|+++|+|+++++++||+.+|++|+.+.+ +.||++...+...+.. ......
T Consensus 3 ~lle~~~d---~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~--------~ihp~D~~~~~~~~~~---~~~~~~ 68 (111)
T 2vlg_A 3 FPLQTKTD---IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKT--------FLHEEDQFLVESYFYN---EHHLMP 68 (111)
T ss_dssp ------CC---EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGG--------GBCGGGHHHHHHHHHC---SCCSSC
T ss_pred chhhcCCC---EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHH--------eECHhHHHHHHHHHhc---cCCCcc
Confidence 35677764 499999999999999999999999999999998554 6778998877665542 233456
Q ss_pred eeEEEEcCCCcEEEEEEEEeeeeCCCCCE
Q 002191 833 FPFGFFNRQGQFVEVALTASRRTDAEGKV 861 (955)
Q Consensus 833 ~e~~~~~~dG~~~~v~~~~~pi~d~~G~v 861 (955)
.+++++++||+.+|+..++.++.+..+..
T Consensus 69 ~e~r~~~kdG~~~wve~~~~~v~~~~~~~ 97 (111)
T 2vlg_A 69 CTFRFIKKDHTIVWVEAAVEIVTTRAERT 97 (111)
T ss_dssp EEEEEECTTSCEEEEEEEEEEC-------
T ss_pred EEEEEEcCCCCEEEEEEEEEEEecccCCc
Confidence 78999999999999999999998876543
No 110
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.96 E-value=7.3e-08 Score=109.47 Aligned_cols=322 Identities=12% Similarity=0.096 Sum_probs=184.8
Q ss_pred HHHHHHHHhhcCCCCCHHH----HHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHH
Q 002191 215 LAVSAISRLQALPGGDIGL----LCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (955)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~----~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~ 290 (955)
.+..++..+. +.+++. +++.+++.+++++|+|++.||.+++++. +....+....-....+.++|... --+
T Consensus 10 ~l~~~~~~l~---~~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~g~~~~~~~~~~~~~~--g~~ 83 (398)
T 1ykd_A 10 IVHQTLSMLD---SHGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQ-ELWSIVAAGEGDRSLEIRIPADK--GIA 83 (398)
T ss_dssp HHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEECCGGGCCCCCEEETTS--HHH
T ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCC-eEEEEeecCCCCccceeecCCCC--chh
Confidence 3344455553 346666 4555666699999999999999999865 33333322211234466676542 234
Q ss_pred HHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEE-cCCCCCceeEEEEe
Q 002191 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLWGLVVC 369 (955)
Q Consensus 291 r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~-~~~~~~~LWGll~~ 369 (955)
...+..+..-.|+|+...+. |..-+.+.......++++.|++||+. +| ++||.|.+
T Consensus 84 g~v~~~~~~v~i~d~~~~~~-------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~~g----~~iGvl~l 140 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDP-------------------RSIFAQKQEKITGYRTYTMLALPLLSEQG----RLVAVVQL 140 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSG-------------------GGHHHHHHHHHHCCCCSCEEEEEEECSSC----CEEEEEEE
T ss_pred hhhhccCcEEeccchhcccc-------------------hhhcccccCcccCcCCceEEEEEEECCCC----CEEEEEEE
Confidence 45677788888888764311 00013344445578899999999996 56 99999999
Q ss_pred ecC---------------CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-ccCCccccc
Q 002191 370 HHT---------------SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK-NILRTQVLLCDMLL-RDAPFSIVT 432 (955)
Q Consensus 370 hh~---------------~pr~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 432 (955)
+++ .++.|+.+...+++.++.+++..|+.....+...++. +.....+....+.. ......+..
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~ 220 (398)
T 1ykd_A 141 LNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSLDLEDTLK 220 (398)
T ss_dssp EEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred eccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 998 6899999999999999999999887543222111111 11122222222222 222222222
Q ss_pred C-CchhhhhccCCeEEEEEC----CeEEEecC----------CCCHHHHHHHHHHHHhccCCCceeec-ccccccCCCCc
Q 002191 433 Q-SPSIMDLVKCDGAALYYG----GRCWLVGV----------TPTESQLKDIAWWLLNNHGDCTGLST-DSLAEAGYPGA 496 (955)
Q Consensus 433 ~-~~~l~~l~~~~g~a~~~~----~~~~~~G~----------~p~~~~~~~l~~wl~~~~~~~~~~~t-~~l~~~~~p~~ 496 (955)
. ...+..+++|++++|+.- +..+.... .|.. ..++.|..... . .++.. |.-.+-.+...
T Consensus 221 ~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~-~-~~~i~~d~~~~~~~~~~ 295 (398)
T 1ykd_A 221 RVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASG-Q-KLNIPFDLYDHPDSATA 295 (398)
T ss_dssp HHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHC-C-CEEECSCGGGSTTCHHH
T ss_pred HHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccC-C-eEEeccccccCcccCcc
Confidence 2 245677889998887652 23332211 0111 23455554432 1 23333 32221111111
Q ss_pred ----cccccccceEEEEEecC-CC----eEEEeecccceEEeccCCCCCCCcCCCCCcccCCchHHHHHHHhcccccCCc
Q 002191 497 ----ALLGQAVCGMATARITS-KD----FLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567 (955)
Q Consensus 497 ----~~~~~~~~g~l~~~i~~-~~----~l~wfR~e~~~~v~W~G~p~~~~~~~~~~~l~PR~SF~~w~e~v~g~s~pW~ 567 (955)
...+.....++++||.. ++ .+..++... .| -.|+.+++.|.+...+...+|.
T Consensus 296 ~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~f~ 356 (398)
T 1ykd_A 296 KQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK-----------------TG--EFPPYNPETWPIAPECFQASFD 356 (398)
T ss_dssp HHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC-----------------SS--CCCCCCGGGTTCCCGGGCCCCC
T ss_pred cchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC-----------------cc--cccccccccccccccccCCCCC
Confidence 00122356789999863 32 122222110 01 1245566788888888888999
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 002191 568 VSEINAIHSLQIVMRDSFQEME 589 (955)
Q Consensus 568 ~~el~~~~~L~~~l~~~l~~~~ 589 (955)
..++..+..+...+.-++....
T Consensus 357 ~~d~~ll~~la~~~a~al~na~ 378 (398)
T 1ykd_A 357 RNDEEFMEAFNIQAGVALQNAQ 378 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777776665554
No 111
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.95 E-value=2.9e-09 Score=102.15 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=83.5
Q ss_pred HHHhcCccEEEEc---CCCcEeeecHHHHHHhCCCchhhcCCCcccccccccc-----------HHHHHHHHHHHHcCCC
Q 002191 623 LIETATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES-----------QGAVENLICRALLGEE 688 (955)
Q Consensus 623 lie~~~~~I~~~D---~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~-----------~~~~~~~l~~~l~~~~ 688 (955)
++++. ++++++| .+|+|+++|+++++++||+.++++|+++. .+.+++. .......+...+..+.
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR-FLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNA 108 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTC
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChh-HhCCccccccccccccccChHHHHHHHHHHHCCC
Confidence 45554 8999999 79999999999999999999999999987 7777662 3333334444444444
Q ss_pred cceEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEec
Q 002191 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733 (955)
Q Consensus 689 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~D 733 (955)
....++.+ .+++|..+|+.++..|+++.+|++.+++++++|
T Consensus 109 ~~~~e~~~----~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 109 EVQVEVVN----FKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp CEEEEEEE----ECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ceEEEEEE----ECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 55555555 678999999999999999999999999998876
No 112
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.94 E-value=3.5e-10 Score=104.80 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcce
Q 002191 612 ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN 691 (955)
Q Consensus 612 eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 691 (955)
.+....+..+.++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++.....+...+..++..+....
T Consensus 6 ~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 3fg8_A 6 HHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVT-EVLPETQGSYFDALCRKVLATGREQQ 84 (118)
T ss_dssp -------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHH-HHCGGGTTSHHHHHHHHHHHHCCCEE
T ss_pred ccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHH-HHcCccchHHHHHHHHHHHHcCCceE
Confidence 34455566778899999999999999999999999999999999999999998 88877665566666777776555544
Q ss_pred EEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHh
Q 002191 692 VELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (955)
Q Consensus 692 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 737 (955)
.++.. ...+| .|+.++..|+.+ |++++++|||++
T Consensus 85 ~~~~~----~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 85 TRVDS----LYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEEC----SSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEE----EcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 42222 12245 578888888754 368889999985
No 113
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.94 E-value=7.3e-08 Score=117.68 Aligned_cols=202 Identities=14% Similarity=0.059 Sum_probs=130.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHH
Q 002191 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (955)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~l 293 (955)
+.+.++...|. +.+++++++++++.+++++|+||+.||.|++|+..-++..+.....+. ..++|..- -....
T Consensus 15 ~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~--~~~~p~~G---i~g~v 86 (691)
T 3ibj_A 15 RKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGE--EVSFPLTG---CLGQV 86 (691)
T ss_dssp HHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEE--EEEEECCS---SSHHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCcccc--ceecCCcc---HHHHH
Confidence 44455556665 569999999999999999999999999999996543332222211211 12344331 22355
Q ss_pred HHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc--CCCCCceeEEEEeec
Q 002191 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN--SKDSMKLWGLVVCHH 371 (955)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~--~~~~~~LWGll~~hh 371 (955)
+..++...|+|+...| ..+..+....+++|.|++||+.+ | ++||+|..++
T Consensus 87 ~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~~~g----~viGvL~l~~ 138 (691)
T 3ibj_A 87 VEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISRATD----QVVALACAFN 138 (691)
T ss_dssp HHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECSSSC----SEEEEEEEES
T ss_pred HHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcCCCC----cEEEEEEEEc
Confidence 6677777888866432 23455677788999999999987 7 9999999888
Q ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhc-ccCCcccccC-CchhhhhccCCeEE
Q 002191 372 TS-PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR-TQVLLCDMLL-RDAPFSIVTQ-SPSIMDLVKCDGAA 447 (955)
Q Consensus 372 ~~-pr~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~-~~~l~~l~~~~g~a 447 (955)
+. ++.|+.+....++.++.+++..+..........++.+.++ ..+....+.. ......+... ...+..+++||.++
T Consensus 139 ~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~ 218 (691)
T 3ibj_A 139 KLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICS 218 (691)
T ss_dssp BSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEE
Confidence 86 6789999999999999999888864432222222212111 1112122222 1223333222 34567788999988
Q ss_pred EEEC
Q 002191 448 LYYG 451 (955)
Q Consensus 448 ~~~~ 451 (955)
|+.-
T Consensus 219 i~L~ 222 (691)
T 3ibj_A 219 VFLL 222 (691)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8653
No 114
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.93 E-value=4.4e-09 Score=101.76 Aligned_cols=139 Identities=9% Similarity=0.057 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCC-ccCCCCCCCCchHHHHHHHHhCCEEEeecCC
Q 002191 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP-YLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (955)
Q Consensus 228 ~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s-~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~ 306 (955)
|.|++++++.+++.+.+++|+|++.||-+++|+.-.+++-. ++++ +... .....+ +...+..+...+|+|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~~---g~~~~~~~~-~~~~~~---~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAAR---GLSEHYQRA-VDGHSP---WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEE---SCCHHHHHH-TCBCCS---CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEeeC---CCCHHHHhh-ccCCCc---hhhhhhcCCcEEEeChh
Confidence 45899999999999999999999999999999733333321 2211 1100 000000 11223445555566654
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002191 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (955)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~ 386 (955)
..|- .+.+.+.+...|++|.+++||..+| +++|.|..++..|+.|+.+++.+++
T Consensus 74 ~~~~----------------------~~~~~~~~~~~g~~s~~~vPl~~~~----~~iGvl~~~~~~~~~f~~~~~~ll~ 127 (151)
T 3hcy_A 74 DAEF----------------------SRELKESIVGEGIAALGFFPLVTEG----RLIGKFMTYYDRPHRFADSEIGMAL 127 (151)
T ss_dssp GSCC----------------------CHHHHHHHHHHTCCEEEEEEEESSS----SEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred hCcc----------------------cchhHHHHHhcCchheEEeceEECC----EEEEEEEEecCCCCCCCHHHHHHHH
Confidence 4322 2556677889999999999999887 9999999999889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002191 387 FLVQAFSLQLYME 399 (955)
Q Consensus 387 ~l~~~~~~~l~~~ 399 (955)
.++.+++..|+..
T Consensus 128 ~~a~~~a~ai~~~ 140 (151)
T 3hcy_A 128 TIARQLGFSIQRM 140 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888654
No 115
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.93 E-value=1.9e-09 Score=101.96 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCC
Q 002191 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (955)
Q Consensus 749 ~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~ 828 (955)
..++.++++++. +|+++|.+|+|+++|+++++++||+.++++|+++.+ ++++ ++...+...+......+
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~-l~~~-------~~~~~~~~~~~~~~~~~ 75 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRN-FLTE-------HHQARYDNLLSHDVQLG 75 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGG-GBCT-------TCCGGGGCTTC------
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHH-HcCh-------HhHHHHHHHHHHHHhcC
Confidence 457889998874 699999999999999999999999999999998764 3332 11111111111111111
Q ss_pred -------CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 829 -------GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 829 -------~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
.....|+.++++||+.+|+.++++|+.+ +... ++++++|..
T Consensus 76 ~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 76 TNCGQPVQHPAQETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLE 123 (129)
T ss_dssp ----CCSCEEEEEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC-
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechh
Confidence 1235788899999999999999999983 3333 667778864
No 116
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.91 E-value=1.3e-09 Score=100.81 Aligned_cols=108 Identities=8% Similarity=-0.020 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhc
Q 002191 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT 826 (955)
Q Consensus 747 se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 826 (955)
++++|+.++++++. +|+++|.+|+|+++|+++++++|++.++++|+++.+. .+++....+.........
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~ 85 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAV--------MDSEAANQRLEAGKSAVE 85 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGS--------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHh--------CCHHHHHHHHHHHHHHhc
Confidence 77889999999875 5999999999999999999999999999999986642 223333333333344444
Q ss_pred CCCcceeeEEEEcCCCc-EEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 827 GQGTENFPFGFFNRQGQ-FVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 827 g~~~~~~e~~~~~~dG~-~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
.+... ...+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 86 ~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 86 NGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred CCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 44222 223444 68999999998765 56678999999998
No 117
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.88 E-value=1.1e-08 Score=95.04 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhC------------CChhhhccCCccchhcccchhccChhhHHH
Q 002191 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG------------WMRHEVIGKMLPREIFGNFCRMKGQDMLTK 816 (955)
Q Consensus 749 ~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G------------~~~eeviGk~~~~~~~~~~~~l~~~d~~~~ 816 (955)
.++++++++++. ||+++|.+|+|+++|+++++++| |+.++++|+++.. +++ .+...
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~-~~~------~~~~~-- 72 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV-FHK------NPAHQ-- 72 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGG-GCS------SHHHH--
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHH-hcC------CHHHH--
Confidence 568899999874 69999999999999999999996 8999999998653 222 12211
Q ss_pred HHHHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcc
Q 002191 817 FMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (955)
Q Consensus 817 ~~~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (955)
...+.. .. ..+..++. .+|. ++.++.+|++|.+|++.|++++++|||++
T Consensus 73 -~~~~~~-~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 73 -RHLLAN-LT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp -HHHHHH-CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred -HHHHhC-cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 112222 11 23333332 2443 56789999999999999999999999974
No 118
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.85 E-value=1.3e-08 Score=92.95 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=79.5
Q ss_pred HHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCC-cceEEEEEEee
Q 002191 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-DKNVELKLRKF 699 (955)
Q Consensus 621 ~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~-~~~~e~~~~~~ 699 (955)
..++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++... ....+..++..+. ....+..+
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 83 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLS-QLIQHASL--DLALLTQPLQSGQSITDSDVTF--- 83 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHH-HHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE---
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHH-HHhCccch--hhHHHHHHHHcCCcccCCceEE---
Confidence 45899999999999999999999999999999999999999987 66654321 1122333333332 22334443
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
. ++|..+|+.++..|+.+ +|. .|++.+++||+
T Consensus 84 -~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 -V-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp -E-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred -e-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 3 67899999999999998 776 68899999985
No 119
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.85 E-value=3e-08 Score=111.25 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHH
Q 002191 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (955)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~l 293 (955)
+.+..+...| + +.|++++++.+++.+++++|+||+.||.+++|+. +.++.+.. +....-+.++|...= -+...
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~-g~~~~~~~~~~~~~g--~~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIG-DKVLGEEVSFPLTMG--RLGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEET-TEEEEEEEEEESSSS--SHHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecC-CCccccceeeccccC--HHHHH
Confidence 3445566666 5 6799999999999999999999999999998865 44444332 211122334443321 12456
Q ss_pred HHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc--CCCCCceeEEEEeec
Q 002191 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN--SKDSMKLWGLVVCHH 371 (955)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~--~~~~~~LWGll~~hh 371 (955)
+..+++..|+|+...|- ++......++++|.|++||+.+ | ++||+|.+++
T Consensus 87 ~~~~~~~~i~d~~~~~~------------------------~~~~~~~~~~~~s~l~vPl~~~~~~----~~~Gvl~l~~ 138 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDDV------------------------QQLQNMLGCELQAMLCVPVISRATD----QVVALACAFN 138 (368)
T ss_dssp HHHCCCEEGGGSCHHHH------------------------HHHHHHHCSCCCCEEEEEEECTTTC----SEEEEEEEEE
T ss_pred HhcCCeEEecccccccc------------------------cccccccCcccceEEEEEeecCCCC----cEEEEEEeec
Confidence 77888888888764321 3445677889999999999988 7 9999999888
Q ss_pred CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc-cCCccccc-CCchhhhhccCCeEE
Q 002191 372 TS-PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA-EKNILRTQVLLCDMLLR-DAPFSIVT-QSPSIMDLVKCDGAA 447 (955)
Q Consensus 372 ~~-pr~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~l~~~~g~a 447 (955)
+. ++.|+......++.++.+++..|........... ++...........+... .....+.. -...+..+++|+.++
T Consensus 139 ~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 218 (368)
T 1mc0_A 139 KLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICS 218 (368)
T ss_dssp ESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEE
Confidence 87 5679999999999999999998865422221111 11111111121112111 12222221 134567788999887
Q ss_pred EEEC
Q 002191 448 LYYG 451 (955)
Q Consensus 448 ~~~~ 451 (955)
|+.-
T Consensus 219 i~l~ 222 (368)
T 1mc0_A 219 VFLL 222 (368)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 120
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.84 E-value=1.1e-08 Score=99.45 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=83.9
Q ss_pred HHHHHHHHhcCCCCCCeeeecCCCcEeeecHH---HHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhh
Q 002191 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAA---MEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGI 825 (955)
Q Consensus 749 ~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a---~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 825 (955)
.++++++++++. +|+++|.+|+|++||++ +++++| ..++++|++..+ ++ .+.....+.. +...+
T Consensus 19 ~~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~-~~-------~~~~~~~v~~-i~~~l 85 (151)
T 2qkp_A 19 EQANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVEL-CH-------PPKVLDKVKK-VFELL 85 (151)
T ss_dssp HHHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGG-SS-------CHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHH-hC-------CHHHHHHHHH-HHHHH
Confidence 457889999975 59999999999999999 999999 567899998653 22 1222222222 33344
Q ss_pred cCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHHH
Q 002191 826 TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 879 (955)
Q Consensus 826 ~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~el 879 (955)
..+.....++.+...+ ..+++.++..|++|++|+++|++.+++|||+.++.+.
T Consensus 86 ~~g~~~~~~~~~~~~~-~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~ 138 (151)
T 2qkp_A 86 RNGQRDKVNMWFQSER-LGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDS 138 (151)
T ss_dssp HTTSBSEEEEEEEETT-TTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGG
T ss_pred HcCCccEEEEEEecCC-CCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhh
Confidence 4444555555443332 1256788999999999999999999999998665543
No 121
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.30 E-value=5.1e-10 Score=122.22 Aligned_cols=173 Identities=11% Similarity=-0.022 Sum_probs=113.7
Q ss_pred EEEEEEEeecCCCCEEEEEEEEe-cchHh---HHHHHHHHHHHHHHHHHHHh--------------cCCCCCCeeeecCC
Q 002191 710 ILVNACTSRDYKNNVKGVCFVGQ-DITHE---KVLMDKFIRLQGDYEAIIQS--------------VNPLIPPIFASDEN 771 (955)
Q Consensus 710 v~v~~~pi~d~~g~v~gvv~v~~-DITer---k~ae~~L~~se~~lr~i~e~--------------~~~~id~I~~~D~~ 771 (955)
+..+..|+++ +|+++|++++.+ |+|++ +..|...++....|..++.. ++.+.+||+++|.+
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~dGIivvD~~ 189 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGDGFIRLDVD 189 (305)
Confidence 6888999997 689999999999 99997 45666666666667666640 11233679999999
Q ss_pred CcEeeecHHHHHHhC---CChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcC-CCcceeeEEEEcCCCcEEEE
Q 002191 772 ACCSEWNAAMEKVTG---WMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITG-QGTENFPFGFFNRQGQFVEV 847 (955)
Q Consensus 772 g~i~~~N~a~~~l~G---~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g-~~~~~~e~~~~~~dG~~~~v 847 (955)
|+|+++|+++.++|| ++ ++++|+++.+ +++.... .+.....+...+..++.+ +.....+... . .+++
T Consensus 190 G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~e-l~~~~~~--~~~~~~~~~~~l~~vl~~~~~~~~~ei~~---~--~~~l 260 (305)
T 2ykf_A 190 GVVSYASPNALSAYHRMGLT-TELEGVNLID-ATRPLIS--DPFEAHEVDEHVQDLLAGDGKGMRMEVDA---G--GATV 260 (305)
Confidence 999999999999985 44 7889998664 2221000 000000122222223343 3333222221 2 3567
Q ss_pred EEEEeeeeCCCCCEEEEEEEEeccCcccHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002191 848 ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQ 901 (955)
Q Consensus 848 ~~~~~pi~d~~G~v~g~v~i~~DITerk~~el~lq~~aE~~~~ak~~fla~iSH 901 (955)
.++..|+.+ +|++.|++.+++|||+.++.|.+++ .|+..+..|.|
T Consensus 261 ~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~--------~K~~~IrEIHH 305 (305)
T 2ykf_A 261 LLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALI--------SKDATIREIHH 305 (305)
Confidence 888899986 5888999999999999888876653 34444555544
No 122
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.79 E-value=1.1e-07 Score=93.76 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCc--cCCCCCCCCchHHHHHHHHhCCEEEeecCC
Q 002191 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY--LGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (955)
Q Consensus 229 ~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~--lg~~~p~~dip~~~r~ly~~~~~r~i~d~~ 306 (955)
.+++++++.+++.++++++||++-+|-++++ +.+.++..+.-... .|..+|..+-+ ....+..++..++ |..
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~~---~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v~-~~~ 77 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLANE---TLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIFR-SLT 77 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEETT---EEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEEE-ESC
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEECC---EEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEEE-cCc
Confidence 4799999999999999999999999999753 33333333322222 46677763322 2334555666554 433
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002191 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (955)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~ 386 (955)
..+- .-+...|+...|++|.|++||+.+| +++|.|...+..|+.++.+...+++
T Consensus 78 ~~~~----------------------~~~~~~~~~~~~~~S~l~vPL~~~~----~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 78 DTQD----------------------NFYEKQYLAILDLKSILVIPIYSKN----KRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp CTTC----------------------CCTTHHHHHTTTCCEEEEEEEECSS----CEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccc----------------------ccccchHHHhhCCCEEEEeCeeECC----EEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 2221 1223467899999999999999998 9999999999889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002191 387 FLVQAFSLQLYME 399 (955)
Q Consensus 387 ~l~~~~~~~l~~~ 399 (955)
.|+.++++.|+.+
T Consensus 132 ~la~~~aiai~na 144 (165)
T 3o5y_A 132 QLTDHLAVSIENV 144 (165)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988643
No 123
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.79 E-value=2.1e-09 Score=99.39 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHh
Q 002191 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQ 823 (955)
Q Consensus 744 L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (955)
+...+..+++++++++. +|+++|.+|+|+++|+++++++|++.++++|+++.+ +++ +.....+...+.+
T Consensus 7 ~~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~-~~~-------~~~~~~~~~~~~~ 75 (118)
T 3fg8_A 7 HHHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTE-VLP-------ETQGSYFDALCRK 75 (118)
T ss_dssp ------CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHH-HCG-------GGTTSHHHHHHHH
T ss_pred cccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHH-HcC-------ccchHHHHHHHHH
Confidence 34445566778888874 699999999999999999999999999999998654 333 2222234445556
Q ss_pred hhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcc
Q 002191 824 GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 874 (955)
Q Consensus 824 ~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (955)
++..+....+++.....+| +|+.++..|+.+ |++++++|||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 76 VLATGREQQTRVDSLYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp HHHHCCCEEEEEECSSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred HHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 6665556666433333466 577888888754 377888999985
No 124
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.72 E-value=1.6e-08 Score=92.35 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCeeeecCC-CcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhc-CCCc---ceeeEEE
Q 002191 763 PPIFASDEN-ACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT-GQGT---ENFPFGF 837 (955)
Q Consensus 763 d~I~~~D~~-g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-g~~~---~~~e~~~ 837 (955)
++|+++|.+ |+|+++|+++++++||+.++++|+++.+ +++ +++............. ++.. ...++.+
T Consensus 9 ~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~-l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T 1ll8_A 9 KAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQ-FFL-------RSDSDVVEALSEEHMEADGHAAVVFGTVVDI 80 (114)
T ss_dssp CEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGG-GSS-------CTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE
T ss_pred ceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHH-hcC-------cchhHHHHHHHHHhhccCCcceeccCcEEEE
Confidence 479999998 9999999999999999999999998664 222 2222211111111222 1111 1456778
Q ss_pred EcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 838 FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
.+++|+.+|+.++.+|+.+.++. +++++++|++
T Consensus 81 ~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 89999999999999999876553 5778888876
No 125
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.72 E-value=6.6e-09 Score=94.53 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCC---CchhhcCCCccccccccccHHHHHHHHHHHHcC
Q 002191 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL---PASEAMGKSLIDEVVHEESQGAVENLICRALLG 686 (955)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~---~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~ 686 (955)
.++++...++++.++++++++++++|.+|+|+++|+++++++|+ +.++++|+++. +++++.. +...+..
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~-------~~~~~~~ 78 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSH-SWSQVVD-------VSEVLRD 78 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTC-CCSCTHH-------HHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcc-cccCchh-------HHHHhcc
Confidence 45566667788999999999999999999999999999999997 88999999987 7765542 2233333
Q ss_pred CCcc-eEEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 687 EEDK-NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 687 ~~~~-~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
+... ... + ..+| .|+.++..|+.+ +|++.|++++++|||
T Consensus 79 ~~~~~~~~--~-----~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 79 GTPRRDEE--I-----TIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp TCCCCCCC--E-----ESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred CceeccEE--E-----EECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 3221 111 1 1234 577888899987 788889999999997
No 126
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.71 E-value=1.1e-08 Score=93.57 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=75.3
Q ss_pred hcCccEEEEcCC-CcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcC-CCc---ceEEEEEEeee
Q 002191 626 TATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EED---KNVELKLRKFE 700 (955)
Q Consensus 626 ~~~~~I~~~D~d-g~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~-~~~---~~~e~~~~~~~ 700 (955)
+.+++|+++|.+ |+|+++|++++++|||+.++++|+++. ++++++............... +.. ...++.+
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLT-QFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDI---- 80 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGG-GGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE----
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHH-HhcCcchhHHHHHHHHHhhccCCcceeccCcEEEE----
Confidence 355799999999 999999999999999999999999998 888876554332222111111 111 1223444
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEEEEecch
Q 002191 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (955)
Q Consensus 701 ~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 735 (955)
.++||..+|+.++..|+.+.++. +++++++|++
T Consensus 81 ~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 68899999999999999876543 5678888875
No 127
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.71 E-value=2.4e-09 Score=119.30 Aligned_cols=121 Identities=19% Similarity=0.282 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEE
Q 002191 614 SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (955)
Q Consensus 614 ~~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 693 (955)
++++++++.++++++++|+++|.+|+|++||+++++++||+.++++|+++. ++.+++. ....+......+....
T Consensus 4 ~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~-~~~~~~~---~~~~~~~~~~~~~~~~-- 77 (349)
T 3a0r_A 4 EHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DLPDFEE---IGSVAESVFENKEPVF-- 77 (349)
T ss_dssp -----CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBST-TSTTTTH---HHHHHHHHHHHCCCCE--
T ss_pred HHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHH-HCcChhH---HHHHHHHHHhcCCcee--
Confidence 344556778999999999999999999999999999999999999999987 6643332 2233333443333221
Q ss_pred EEEEeeeeccCCcEEEEEEEEEEeecCCCCE-EEEEEEEecchHhHHHHHHHHH
Q 002191 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNV-KGVCFVGQDITHEKVLMDKFIR 746 (955)
Q Consensus 694 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v-~gvv~v~~DITerk~ae~~L~~ 746 (955)
... ..++.+|+.++..|+++.++.. .|++++++|||++|++++++++
T Consensus 78 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~ 125 (349)
T 3a0r_A 78 LNF------YKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKR 125 (349)
T ss_dssp EEC------CCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTH
T ss_pred ecc------cccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHH
Confidence 111 1223468889999999888775 5899999999999987765543
No 128
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.69 E-value=5.3e-08 Score=109.31 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEE
Q 002191 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (955)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~ 697 (955)
+++..+++++++||+++|.+|+|++||++ +++| ++.++++|+++. +++++.....+...+.....+ .....++.+
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~-~~~p~~~~~~~~~l~~~l~~g-~~~~~~~~~- 313 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQ-LCHPPKSVYVVNKILKAFKEG-RKKEATFWL- 313 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTT-TSSCGGGHHHHHHHHHHHHHT-SCSCEEEEE-
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHH-HHCChhhHHHHHHHHHHHHcC-CceEEEEEE-
Confidence 35788999999999999999999999999 9999 899999999998 777665544444444433333 333333333
Q ss_pred eeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHH
Q 002191 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743 (955)
Q Consensus 698 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~ 743 (955)
..+| +++.++..|++|.+|+++|++.+++|||+.++.+++
T Consensus 314 ----~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 314 ----RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp ----EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred ----eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 2345 578999999999999999999999999998876543
No 129
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.69 E-value=5.7e-07 Score=100.77 Aligned_cols=150 Identities=11% Similarity=0.156 Sum_probs=111.2
Q ss_pred HHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCC--CCccCCCCCCCCchHHHHHH
Q 002191 217 VSAISRLQALPG-GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL--EPYLGIHFPANDIPQAARFL 293 (955)
Q Consensus 217 ~~~~~~l~~~~~-~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~--~s~lg~~~p~~dip~~~r~l 293 (955)
..+...+.+ + .+++++++.+++.+++++|+||+.||.+++ |+.+..+...++ +...+..+|... .-+...
T Consensus 184 ~~i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~ 256 (368)
T 1mc0_A 184 LQVAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHV 256 (368)
T ss_dssp HHHHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHH
T ss_pred HHHHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeee
Confidence 344455555 4 489999999999999999999999999998 445554443222 234566776543 335567
Q ss_pred HHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc-CCCCCceeEEEEeecC
Q 002191 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-SKDSMKLWGLVVCHHT 372 (955)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~-~~~~~~LWGll~~hh~ 372 (955)
+..++..+|+|+...|-- .........+.+++.|++||+.. | ++||.|.++++
T Consensus 257 ~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~~----~~iGvl~l~~~ 310 (368)
T 1mc0_A 257 ATTGQILNIPDAYAHPLF----------------------YRGVDDSTGFRTRNILCFPIKNENQ----EVIGVAELVNK 310 (368)
T ss_dssp HHHCCCEEESCSTTCTTC----------------------CCTTHHHHTCCCCCEEEEEEECTTS----CEEEEEEEEEE
T ss_pred hhhCCEEEecCcccCccc----------------------chhhhhccCCccceEEEEeeECCCC----cEEEEEEEEEC
Confidence 888999999998765430 11122234456799999999984 7 99999999999
Q ss_pred CCC-CCChhHHHHHHHHHHHHHHHHHHH
Q 002191 373 SPR-YIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 373 ~pr-~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
.++ .|+...+.+++.++.++++.|+.+
T Consensus 311 ~~~~~f~~~d~~ll~~la~~~a~ai~na 338 (368)
T 1mc0_A 311 INGPWFSKFDEDLATAFSIYCGISIAHS 338 (368)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 865 799999999999999998888654
No 130
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=1.5e-07 Score=85.61 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhc-CCCc
Q 002191 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT-GQGT 830 (955)
Q Consensus 752 r~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-g~~~ 830 (955)
..++++++. +++++|.+|+|+++|+++++++|++.++++|+++.+ +++... .. ...+.+++. +...
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~-~~~~~~-----~~----~~~~~~~~~~~~~~ 76 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQ-LIQHAS-----LD----LALLTQPLQSGQSI 76 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHH-HCSEEE-----CC----THHHHHHHHHCCCE
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHH-HhCccc-----hh----hHHHHHHHHcCCcc
Confidence 458888874 599999999999999999999999999999998654 332111 00 111222333 3323
Q ss_pred ceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 831 ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 831 ~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
...++.+. ++|+.+|+.+++.|+.+ +|. .+++.+++||+
T Consensus 77 ~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 77 TDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp EEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 44566666 78999999999999999 776 68899999985
No 131
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.62 E-value=1.4e-07 Score=102.99 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=103.1
Q ss_pred ccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCc---ceEEEEEEeeeeccCC
Q 002191 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED---KNVELKLRKFELQKQH 705 (955)
Q Consensus 629 ~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~---~~~e~~~~~~~~~~dG 705 (955)
..+...+.+|+++++|+++..++||.++|++|+++. +++||++.+.+.+.+..+++++.. ...++++ +++||
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~----~~kdG 249 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSIL-TYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRF----CTQNG 249 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEE----ECTTS
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHH-HeECHHHHHHHHHHHHHHHHcCCCccccceEEEE----EccCC
Confidence 457778999999999999999999999999999999 999999999999988888876544 3567777 78999
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEe--------c-----chHhHHHHHHHHHHHHHHHHHHH
Q 002191 706 SVVYILVNACTSRDY-KNNVKGVCFVGQ--------D-----ITHEKVLMDKFIRLQGDYEAIIQ 756 (955)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gvv~v~~--------D-----ITerk~ae~~L~~se~~lr~i~e 756 (955)
.++|+.....+++|. ++++..++++.+ | +++++..++++++.+++.+.++-
T Consensus 250 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (317)
T 4dj3_A 250 EYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLL 314 (317)
T ss_dssp CEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHhc
Confidence 999999999999986 466667777766 4 45567778888888888877654
No 132
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.60 E-value=9.4e-07 Score=85.58 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEeecCCC----CeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEeecC
Q 002191 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDD----HGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDC 305 (955)
Q Consensus 230 ~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~----~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~ 305 (955)
+++++++.+++.+++++|+|++.||-.+++. ..-++.-+.....+.+.|..||... + -....+..++..+|+|+
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 4578999999999999999999999998874 2333333444444557788887643 2 33355777888888887
Q ss_pred CCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC-CCCCCChhHHHH
Q 002191 306 HAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT-SPRYIPFPLRYA 384 (955)
Q Consensus 306 ~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~-~pr~~~~~~r~~ 384 (955)
... | |++|.|++||..+| +.-|.|..++. .|+.++.+...+
T Consensus 79 ~~d-------------------------~---------~~~s~l~vPL~~~~----~~~GvL~l~~~~~~~~f~~~d~~l 120 (149)
T 2vjw_A 79 DGP-------------------------G---------LGGPALVLPLRATD----TVAGVLVAVQGSGARPFTAEQLEM 120 (149)
T ss_dssp CTT-------------------------S---------CEEEEEEEEEEETT----EEEEEEEEEEETTCCCCCHHHHHH
T ss_pred ccC-------------------------C---------CCCeEEEEEEccCC----eEEEEEEEeeCCCCCCCCHHHHHH
Confidence 632 1 78999999999888 99999999998 699999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002191 385 CEFLVQAFSLQLYME 399 (955)
Q Consensus 385 ~~~l~~~~~~~l~~~ 399 (955)
++.|+.+.++.|..+
T Consensus 121 l~~lA~~aa~al~~a 135 (149)
T 2vjw_A 121 MTGFADQAAVAWQLA 135 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888877543
No 133
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.58 E-value=4e-08 Score=89.22 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCC---ChhhhccCCccchhcccchhccChhhHHHHH
Q 002191 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW---MRHEVIGKMLPREIFGNFCRMKGQDMLTKFM 818 (955)
Q Consensus 742 ~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~---~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~ 818 (955)
+++++.+..++.++++++. +++++|.+|+|+++|+++++++|| +.++++|+.+.. ++ ++.. +.
T Consensus 8 ~~l~~~~~~~~~il~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~-~~-------~~~~---~~ 73 (118)
T 2w0n_A 8 YEISTLFEQRQAMLQSIKE---GVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHS-WS-------QVVD---VS 73 (118)
T ss_dssp HHHCTTHHHHHHHHHCCCC---CCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCC-CS-------CTHH---HH
T ss_pred HHHHHHHHHHHHHHhhccc---cEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCccc-cc-------Cchh---HH
Confidence 4556667788999999975 599999999999999999999998 889999997653 22 1222 12
Q ss_pred HHHHhhhcCCCcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 819 ILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 819 ~~l~~~~~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
+.+.++...... . ...+| +|+.++..|+.+ +|++.|++++++|||
T Consensus 74 ----~~~~~~~~~~~~-~-~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 74 ----EVLRDGTPRRDE-E-ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp ----HHHHTTCCCCCC-C-EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ----HHhccCceeccE-E-EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 222222222111 1 22355 477888899987 888889999999998
No 134
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.55 E-value=3.1e-07 Score=88.18 Aligned_cols=141 Identities=11% Similarity=0.014 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccC-CCCCCCCchHHHHHHHHhCCEEEeecCC
Q 002191 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLG-IHFPANDIPQAARFLFKQNRVRMICDCH 306 (955)
Q Consensus 228 ~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg-~~~p~~dip~~~r~ly~~~~~r~i~d~~ 306 (955)
+.+++++++.+++.+++++++|++.||-+++++.-.+.+-.- .+-+.+.. ..+|..+ .-....+..++..++.|+.
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEG-IDEETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEES-CCHHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEec-CCHHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 457999999999999999999999999999664444444321 11111111 2444322 1344567778888888865
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCC-CCCChhHHHHH
Q 002191 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP-RYIPFPLRYAC 385 (955)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~p-r~~~~~~r~~~ 385 (955)
..|--. . .+. ...++++.+++||+.+| +++|.|.+++..+ +.|+.....++
T Consensus 81 ~~~~~~------------------~-~~~-----~~~~~~s~l~vPl~~~~----~~~Gvl~l~~~~~~~~f~~~~~~~l 132 (153)
T 2w3g_A 81 AHPASI------------------G-FPP-----YHPPMRTFLGVPVRVRD----ESFGTLYLTDKTNGQPFSDDDEVLV 132 (153)
T ss_dssp GSTTCC------------------C-CCT-----TCCCCCCEEEEEEEETT----EEEEEEEEEEETTSCCCCHHHHHHH
T ss_pred cCchhc------------------C-CCC-----cCCCCCeEEEeeEEECC----EEEEEEEEeeCCCCCCCCHHHHHHH
Confidence 433200 0 010 34688999999999988 9999999999987 89999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002191 386 EFLVQAFSLQLYME 399 (955)
Q Consensus 386 ~~l~~~~~~~l~~~ 399 (955)
+.++.+++..|+.+
T Consensus 133 ~~la~~~a~ai~~a 146 (153)
T 2w3g_A 133 QALAAAAGIAVANA 146 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888643
No 135
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.52 E-value=1.8e-06 Score=97.93 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEee-cCC
Q 002191 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMIC-DCH 306 (955)
Q Consensus 228 ~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~-d~~ 306 (955)
+.+++++++.+++.+++++|+||+.||-+++++..-++.-+..+. +..+.++|... .-+...+..+.+..|+ |++
T Consensus 212 ~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~i~~d~~ 287 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNG--STKELRVPIGK--GFAGIVAASGQKLNIPFDLY 287 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSS--CEEEEEEETTS--HHHHHHHHHCCCEEECSCGG
T ss_pred cCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCC--ceeeeeccCCC--chhhHHhccCCeEEeccccc
Confidence 348999999999999999999999999999987544333331211 22233555432 3345678889999998 877
Q ss_pred CCCcccccccccCCccccccccccCCChhh--HHHHhhcCceeEEEEEEE-EcCCCCCceeEEEEeecCC----------
Q 002191 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCH--LQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVCHHTS---------- 373 (955)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h--~~yl~n~gv~asl~v~i~-~~~~~~~~LWGll~~hh~~---------- 373 (955)
..|- ...+ ..-...++++|.|+|||+ .+| +++|.|.++++.
T Consensus 288 ~~~~----------------------~~~~~~~~~~~~~~~~s~l~vPl~~~~~----~~iGvl~l~~~~~~~~~~~~~~ 341 (398)
T 1ykd_A 288 DHPD----------------------SATAKQIDQQNGYRTCSLLCMPVFNGDQ----ELIGVTQLVNKKKTGEFPPYNP 341 (398)
T ss_dssp GSTT----------------------CHHHHHHHHHHTCCCCCEEEEEEECSSS----CEEEEEEEEEECCSSCCCCCCG
T ss_pred cCcc----------------------cCcccchhhhcCCeeeeEEEEeeecCCC----CEEEEEEEEecCCccccccccc
Confidence 5432 1222 222346778999999999 477 999999999987
Q ss_pred ----------CCCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 374 ----------PRYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 374 ----------pr~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
|+.|+.....+++.++.++++.|+.+
T Consensus 342 ~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na 377 (398)
T 1ykd_A 342 ETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNA 377 (398)
T ss_dssp GGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998888644
No 136
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.52 E-value=6.2e-07 Score=77.04 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=68.4
Q ss_pred cCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCc
Q 002191 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706 (955)
Q Consensus 627 ~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~ 706 (955)
++++++++|.+|+|+++|+++++++|++.++++|+++. ++ +.... ....+...+..+... ++.. .++.
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~--~~~~~-~~~~~~~~~~~~~~~--~~~~------~~~~ 68 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DL--PDFEE-IGSVAESVFENKEPV--FLNF------YKFG 68 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GS--TTCHH-HHHHHHHHHHHTCCE--EEEE------EEET
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHH-HC--cchHH-HHHHHHHHhccCCeE--EEEE------EcCC
Confidence 47899999999999999999999999999999999987 66 33332 223333343333222 2222 1244
Q ss_pred EEEEEEEEEEeecCCCC-EEEEEEEEec
Q 002191 707 VVYILVNACTSRDYKNN-VKGVCFVGQD 733 (955)
Q Consensus 707 ~~~v~v~~~pi~d~~g~-v~gvv~v~~D 733 (955)
.+|+.++..|+.+.+|. +.|++++++|
T Consensus 69 ~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 69 ERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 47899999999988654 6788888876
No 137
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.52 E-value=1.3e-07 Score=95.17 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEE
Q 002191 615 SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (955)
Q Consensus 615 ~~~~~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 694 (955)
+....++.+++++++|++++|.+|+|+++|++++++||++.++++|+++. +++++.... ..+..+.......
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~-~~~~~~~~~-------~~~~~~~~~~~~~ 148 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFL-------RWLESEPQDSHNE 148 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGG-GTSTTCCHH-------HHHHTCCCSCEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHH-HHhCCCCHH-------HHHhcCCCCCcce
Confidence 34567899999999999999999999999999999999999999999998 777664322 1222222111222
Q ss_pred EEEeeeeccCCcEEEEEEEEEEeecCCCC----EEEEEEEEecchHhH
Q 002191 695 KLRKFELQKQHSVVYILVNACTSRDYKNN----VKGVCFVGQDITHEK 738 (955)
Q Consensus 695 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~----v~gvv~v~~DITerk 738 (955)
.+. .+|. ++.++..|+.+.+|+ +.|++.+++|||+++
T Consensus 149 ~~~-----~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 149 HVV-----INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEE-----ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred EEE-----ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 221 1454 466788999875665 788888899999875
No 138
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.48 E-value=1.5e-07 Score=99.57 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCEEEEEEEEeccCcccHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHhHhHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 002191 859 GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACER 938 (955)
Q Consensus 859 G~v~g~v~i~~DITerk~~el~lq~~aE~~~~ak~~fla~iSHELRnPL~~I~g~~~LL~~~~l~~~~~~~l~~i~~~a~ 938 (955)
|....+...++|+|.++..+++++... .++ -+.+.|||||||||++|.+++++|+....++...++++.|.++++
T Consensus 18 g~~~~~~~~~~e~~~~~~~e~~~~~~~-laa----llas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~ 92 (247)
T 4fpp_A 18 GSHNQMTETVTETTAPASPEADVQGPD-FAA----MLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSAR 92 (247)
T ss_dssp -------------------------CH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhHHH-HHH----HHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 444456667799998887776654322 111 256789999999999999999999987777778899999999999
Q ss_pred HHHHhhcc
Q 002191 939 QIMTIIDG 946 (955)
Q Consensus 939 rl~~LI~D 946 (955)
++..+++.
T Consensus 93 ~~~~ll~~ 100 (247)
T 4fpp_A 93 KLADLLQF 100 (247)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888864
No 139
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.46 E-value=5e-07 Score=99.52 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=89.2
Q ss_pred CccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCc-----ceEEEEEEeeeec
Q 002191 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-----KNVELKLRKFELQ 702 (955)
Q Consensus 628 ~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~-----~~~e~~~~~~~~~ 702 (955)
.+.++..|.+|+++++|+++..++||+++|++|+++. +++||++...+...+..++..+.. ...++++ ++
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~-~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~----~~ 228 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIM-DFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRF----LI 228 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEE----EC
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHH-HEECHHHHHHHHHHHHHHHHcCCcccccccceEEEE----Ec
Confidence 4678888999999999999999999999999999999 999999999988888887764443 2456777 78
Q ss_pred cCCcEEEEEEEEEEeecCC-CCEEEEEEEEecchHh
Q 002191 703 KQHSVVYILVNACTSRDYK-NNVKGVCFVGQDITHE 737 (955)
Q Consensus 703 ~dG~~~~v~v~~~pi~d~~-g~v~gvv~v~~DITer 737 (955)
+||.++|+..+..+++|.. +++..++++.+.|+..
T Consensus 229 kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 229 QNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp TTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred cCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 9999999999999999875 5677788887766643
No 140
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.45 E-value=9e-07 Score=81.88 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred HHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCcccc-ccccccHHHHHHHHHHHHcCCCcceEEEEEEee
Q 002191 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE-VVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (955)
Q Consensus 621 ~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~-l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~ 699 (955)
..++++++.|++++|.+|+|++||..+++++|+++++++|+++. + +.+......+...+.+....+. ...++.+.
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f-~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v-- 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFF-KDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT-- 95 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCC-CCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE--
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchh-hhccchhcccHHHHHHHHHHhcCc-eeEEEEEE--
Confidence 45799999999999999999999999999999999999999998 5 4444444444445555444333 33344332
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEE
Q 002191 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCF 729 (955)
Q Consensus 700 ~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~ 729 (955)
.+.+|++ +.++..+..+.+|...+++.
T Consensus 96 -~~~~~~p--~~v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 96 -FDYQMTP--TKVKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp -ECTTSCC--EEEEEEEEECSSSSEEEEEE
T ss_pred -EcCCCCE--EEEEEEEEEcCCCCEEEEEE
Confidence 3678885 55555666677888776643
No 141
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.44 E-value=2.7e-07 Score=103.54 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCC
Q 002191 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (955)
Q Consensus 749 ~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~ 828 (955)
.++++++++++. +|+++|.+|+|++||++ ++++ ++.++++|+++.. +++ +.....+. .+..++..+
T Consensus 239 ~~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~-~~p-------~~~~~~~~-~l~~~l~~g 304 (369)
T 3cax_A 239 EELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQL-CHP-------PKSVYVVN-KILKAFKEG 304 (369)
T ss_dssp HHHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTT-SSC-------GGGHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHH-HCC-------hhhHHHHH-HHHHHHHcC
Confidence 357789999975 69999999999999999 9999 9999999998663 222 22222222 223333333
Q ss_pred CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccCcccHHH
Q 002191 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 878 (955)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e 878 (955)
.....++.+. .+| +++.++..|++|.+|+++|++++++|||+.++.+
T Consensus 305 ~~~~~~~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 305 RKKEATFWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp SCSCEEEEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCC
T ss_pred CceEEEEEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHH
Confidence 3444444433 456 5788999999999999999999999999866543
No 142
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.43 E-value=1.2e-07 Score=100.81 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=65.4
Q ss_pred eccCcccHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHhHhHHHHHHHhccC--C-CCHHHHHHHHHHHHHHHHHHHhhc
Q 002191 869 QILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESS--S-ISENQRQYLETSDACERQIMTIID 945 (955)
Q Consensus 869 ~DITerk~~el~lq~~aE~~~~ak~~fla~iSHELRnPL~~I~g~~~LL~~~--~-l~~~~~~~l~~i~~~a~rl~~LI~ 945 (955)
+|||++++.+ +.++..+.+.+|++.+||||||||++|.++.++|... . ..++.+++++.|..++.+|..+|+
T Consensus 2 ~~it~~~~~~-----~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 76 (258)
T 2c2a_A 2 ENVTESKELE-----RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76 (258)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777766544 2344456778999999999999999999999988642 2 234578899999999999999999
Q ss_pred c-cCccccccC
Q 002191 946 G-MDLRCIEEG 955 (955)
Q Consensus 946 D-Ld~SrIeaG 955 (955)
+ |++++++.|
T Consensus 77 ~ll~~~~~~~~ 87 (258)
T 2c2a_A 77 ELLDFSRLERK 87 (258)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhCC
Confidence 9 899998753
No 143
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.42 E-value=1.2e-06 Score=81.11 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=72.9
Q ss_pred HHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCcccc-ccccccHHHHHHHHHHHHcCCCcceEEEEEEeeee
Q 002191 623 LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE-VVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701 (955)
Q Consensus 623 lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~-l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~ 701 (955)
++++++.|++++|.+|+|++||.+++++.|+++++++|+++. + +.+......+...+.+.+..+. ...++.+. .
T Consensus 27 ~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f-~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv---~ 101 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFF-TEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV---F 101 (129)
T ss_dssp TGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCC-CCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE---E
T ss_pred HHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchh-hhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---E
Confidence 689999999999999999999999999999999999999998 5 4444444455555555555444 33344332 3
Q ss_pred ccCCcEEEEEEEEEEeecCCCCEEEEE
Q 002191 702 QKQHSVVYILVNACTSRDYKNNVKGVC 728 (955)
Q Consensus 702 ~~dG~~~~v~v~~~pi~d~~g~v~gvv 728 (955)
+.+|++ +.++..+..+.+|...+++
T Consensus 102 ~~~~~p--~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 102 DFQMAP--VRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp ECSSCE--EEEEEEEEECSSTTEEEEE
T ss_pred cCCCCE--EEEEEEEEEcCCCCEEEEE
Confidence 677885 5555566667788877654
No 144
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=98.38 E-value=5.3e-06 Score=82.91 Aligned_cols=154 Identities=12% Similarity=0.151 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEeecCCCC-eEEEEEec--CCC--C-----CCccCCCC
Q 002191 213 QKLAVSAISRLQALPGG-DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH-GEVVSEIR--RSD--L-----EPYLGIHF 281 (955)
Q Consensus 213 ~~~~~~~~~~l~~~~~~-~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~-G~viaE~~--~~~--~-----~s~lg~~~ 281 (955)
...+.++...|.+ +. +++++++.+++.+++++|+||..||-++++.. .+.++... ..+ + .+..+.++
T Consensus 6 l~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 6 CNILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 3445566666766 77 99999999999999999999999999998764 56665432 223 2 23345566
Q ss_pred CCCCchHHHHHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCC
Q 002191 282 PANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM 361 (955)
Q Consensus 282 p~~dip~~~r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~ 361 (955)
|... --+...+..++..+|+|++..|-- ..........+++|-|++||+.+|
T Consensus 84 ~~~~--gi~g~v~~tg~~v~i~d~~~d~~f----------------------~~~~~~~~~~~~~S~L~vPl~~~~---- 135 (180)
T 3dba_A 84 PLDI--GIAGWVAHTKKFFNIPDVKKNNHF----------------------SDYLDKKTGYTTVNMMAIPITQGK---- 135 (180)
T ss_dssp CTTS--SHHHHHHHHTCCEEESCGGGCTTC----------------------CCHHHHHHCCCCCCEEEEEEEETT----
T ss_pred eCCC--CHHHHHHHhCCEEEecCCCCCccc----------------------ChhhccccCccccEEEEEEeccCC----
Confidence 6542 234556778888999998765420 001122345678999999999988
Q ss_pred ceeEEEEeecCCC-CCCChhHHHHHHHHHHHHHHHH
Q 002191 362 KLWGLVVCHHTSP-RYIPFPLRYACEFLVQAFSLQL 396 (955)
Q Consensus 362 ~LWGll~~hh~~p-r~~~~~~r~~~~~l~~~~~~~l 396 (955)
++.|.|.+.+..+ +.++.+...+++.|+.+.++.|
T Consensus 136 ~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 136 EVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp EEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999988875 4889999999999988888766
No 145
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.37 E-value=3.1e-06 Score=103.26 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCC--CccCCCCCCCCchHHHHHHHHhCCEEEeecCC
Q 002191 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE--PYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (955)
Q Consensus 229 ~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~--s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~ 306 (955)
.+++++++.+++.+++++|+||+.||-+++ |+.+..+...+.. ...+..+|... .-+...+..++...|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 589999999999999999999999999988 6777776654432 33455666543 3455678889999999988
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEc-CCCCCceeEEEEeecCCC-CCCChhHHHH
Q 002191 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-SKDSMKLWGLVVCHHTSP-RYIPFPLRYA 384 (955)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~-~~~~~~LWGll~~hh~~p-r~~~~~~r~~ 384 (955)
..|- -++.......++++|.|++||+.+ | ++||.|..+++.+ +.|+.....+
T Consensus 270 ~d~~----------------------~~~~~~~~~g~~~rS~L~vPL~~~~g----~viGVL~l~~~~~~~~f~~~d~~l 323 (691)
T 3ibj_A 270 AHPL----------------------FYRGVDDSTGFRTRNILCFPIKNENQ----EVIGVAELVNKINGPWFSKFDEDL 323 (691)
T ss_dssp TSTT----------------------C------CCSCCCCCEEEEECCCSSS----CCCEEEEEEEESSSSSCCTTTTHH
T ss_pred cCcc----------------------ccchhhcccCCeeeeEEEEeEECCCC----CEEEEEEEEECCCCCCCCHHHHHH
Confidence 6543 011222233467999999999987 6 9999999999985 4799999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002191 385 CEFLVQAFSLQLYME 399 (955)
Q Consensus 385 ~~~l~~~~~~~l~~~ 399 (955)
++.++.++++.|+.+
T Consensus 324 l~~lA~~~aiAIena 338 (691)
T 3ibj_A 324 ATAFSIYCGISIAHS 338 (691)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 146
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.36 E-value=1.1e-06 Score=75.41 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCC
Q 002191 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (955)
Q Consensus 763 d~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG 842 (955)
++|+++|.+|+++++|+++++++|++.++++|+.+... + +.. .+...+.+.+..+... ++.. .+|
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~--------~~~-~~~~~~~~~~~~~~~~--~~~~--~~~ 67 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--P--------DFE-EIGSVAESVFENKEPV--FLNF--YKF 67 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--T--------TCH-HHHHHHHHHHHHTCCE--EEEE--EEE
T ss_pred ceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--c--------chH-HHHHHHHHHhccCCeE--EEEE--EcC
Confidence 47999999999999999999999999999999986531 1 111 1222233333333232 2222 244
Q ss_pred cEEEEEEEEeeeeCCCCC-EEEEEEEEec
Q 002191 843 QFVEVALTASRRTDAEGK-VIGCFCFMQI 870 (955)
Q Consensus 843 ~~~~v~~~~~pi~d~~G~-v~g~v~i~~D 870 (955)
..+|+.++..|+.+.+|. +.|++++++|
T Consensus 68 ~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 68 GERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp TTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 557999999999998665 6789988877
No 147
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.32 E-value=2.3e-05 Score=77.01 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=106.2
Q ss_pred HHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHH
Q 002191 213 QKLAVSAISRL-QALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291 (955)
Q Consensus 213 ~~~~~~~~~~l-~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r 291 (955)
|..+..-++++ .. +.|+.+.++.++..+.+.++++|+.+|-+++++.--++.-.... . -..+||-.. --+-
T Consensus 15 ~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~--~~~~i~~ge--Gi~G 86 (167)
T 3mmh_A 15 YREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--L--ACTRIPFGR--GVCG 86 (167)
T ss_dssp HHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--C--CCSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--c--cceEeccCC--ChHH
Confidence 43333334443 44 57999999999999999999999999999988765454433321 1 123444322 1244
Q ss_pred HHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002191 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (955)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh 371 (955)
.-+..++.-+|+|+...|--+ +| ..+++|.++|||+.+| +++|.|.+.+
T Consensus 87 ~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~g----~viGVL~i~s 135 (167)
T 3mmh_A 87 QAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSDG----RCIGVLDADS 135 (167)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccCC----EEEEEEEEec
Confidence 556789999999988654311 11 2368999999999988 9999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHH
Q 002191 372 TSPRYIPFPLRYACEFLVQAFSLQLY 397 (955)
Q Consensus 372 ~~pr~~~~~~r~~~~~l~~~~~~~l~ 397 (955)
..|+.+..+...+++.++.+++..+.
T Consensus 136 ~~~~~F~~~d~~~L~~lA~~la~~i~ 161 (167)
T 3mmh_A 136 EHLAQFDETDALYLGELAKILEKRFE 161 (167)
T ss_dssp SSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998888877664
No 148
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.30 E-value=7.8e-07 Score=89.42 Aligned_cols=107 Identities=10% Similarity=0.094 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhc
Q 002191 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGIT 826 (955)
Q Consensus 747 se~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 826 (955)
....+++++++++. |++++|.+|+|+++|+++++++|++.++++|+++.. +++ +... ...+..
T Consensus 78 ~~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~-~~~-------~~~~---~~~~~~--- 140 (190)
T 2jhe_A 78 EHLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ-LIN-------GFNF---LRWLES--- 140 (190)
T ss_dssp HHHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGG-TST-------TCCH---HHHHHT---
T ss_pred HHHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHH-HhC-------CCCH---HHHHhc---
Confidence 34568899999975 599999999999999999999999999999998654 222 2221 112221
Q ss_pred CC-CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCC----EEEEEEEEeccCccc
Q 002191 827 GQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGK----VIGCFCFMQILVPDL 875 (955)
Q Consensus 827 g~-~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~----v~g~v~i~~DITerk 875 (955)
+. .....++.+ +|. ++.++..|+.+.+|. +.|++++++|||+.+
T Consensus 141 ~~~~~~~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 141 EPQDSHNEHVVI---NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp CCCSCEEEEEEE---TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred CCCCCcceEEEE---CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 21 223333332 664 466788999876665 788898999999875
No 149
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.30 E-value=1.9e-06 Score=79.72 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred HHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcc
Q 002191 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTE 831 (955)
Q Consensus 752 r~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~ 831 (955)
..++++++. |++++|.+|+|++||+++++++||++++++|+++.+.+.+. ...+.-..++.. .+..+. .
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~---~~~~~f~~rf~~----~~~~g~-l 88 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC---TDSPEFYGKFKE----GVASGN-L 88 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---GCSTTTHHHHHH----HHHHTC-C
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch---hcccHHHHHHHH----HHhcCc-e
Confidence 346888764 69999999999999999999999999999999986544331 122332333333 333332 4
Q ss_pred eeeEEE-EcCCCcEEEEEEEEeeeeCCCCCEEEEE
Q 002191 832 NFPFGF-FNRQGQFVEVALTASRRTDAEGKVIGCF 865 (955)
Q Consensus 832 ~~e~~~-~~~dG~~~~v~~~~~pi~d~~G~v~g~v 865 (955)
..++.+ .+++|+ ++.++..+..+.+|..++++
T Consensus 89 ~~~~~~v~~~~~~--p~~v~i~l~~~~~~~~~~i~ 121 (125)
T 1nwz_A 89 NTMFEYTFDYQMT--PTKVKVHMKKALSGDSYWVF 121 (125)
T ss_dssp EEEEEEEECTTSC--CEEEEEEEEECSSSSEEEEE
T ss_pred eEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 444544 488898 55666666778888887655
No 150
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.29 E-value=1.7e-06 Score=80.21 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=69.6
Q ss_pred HHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcce
Q 002191 753 AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTEN 832 (955)
Q Consensus 753 ~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~ 832 (955)
.++++++. ||+++|.+|+|++||.++++++||++++++|+++.+.+.+. ...+.-..+ +.+.+..+. ..
T Consensus 26 ~~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~---~~~~~f~gr----f~~~~~~G~-l~ 94 (129)
T 1mzu_A 26 AEFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC---TNIPAFSGR----FMDGVTSGT-LD 94 (129)
T ss_dssp TTGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---GCSTTTHHH----HHHHHHTSC-CE
T ss_pred HHHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch---hcccHHHHH----HHHHHhcCc-ee
Confidence 35788764 69999999999999999999999999999999986544331 122222233 333334343 44
Q ss_pred eeEEE-EcCCCcEEEEEEEEeeeeCCCCCEEEEE
Q 002191 833 FPFGF-FNRQGQFVEVALTASRRTDAEGKVIGCF 865 (955)
Q Consensus 833 ~e~~~-~~~dG~~~~v~~~~~pi~d~~G~v~g~v 865 (955)
.++.+ .+++|+ ++.++.....+.+|..++++
T Consensus 95 ~~~~yv~~~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 95 ARFDFVFDFQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp EEEEEEEECSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred EEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 45544 488888 55566666778888887654
No 151
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.27 E-value=2.9e-06 Score=92.53 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=88.4
Q ss_pred CccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcC-CCcc-eEEEEEEeeeeccCC
Q 002191 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EEDK-NVELKLRKFELQKQH 705 (955)
Q Consensus 628 ~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~-~~~~-~~e~~~~~~~~~~dG 705 (955)
...+...+.+|+++++|+++..++||.++|++|+++. +++||++...+.+.+..++++ +... ..++++ +++||
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~----~~kdG 250 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL-LFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF----CARNG 250 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE----ECSSS
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHH-HhCCHHHHHHHHHHHHHHHhcCCCcccceEEEE----EccCC
Confidence 3567788999999999999999999999999999999 999999999999999888874 3333 357777 78999
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEecchH
Q 002191 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITH 736 (955)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gvv~v~~DITe 736 (955)
.++|++....++++. ++++..++++..-++.
T Consensus 251 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 251 EYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp CEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred CEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 999999999999886 5777788888765554
No 152
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.25 E-value=4.3e-06 Score=90.78 Aligned_cols=103 Identities=4% Similarity=-0.018 Sum_probs=87.0
Q ss_pred ccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCC-cce-EEEEEEeeeeccCCc
Q 002191 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE-DKN-VELKLRKFELQKQHS 706 (955)
Q Consensus 629 ~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~-~~~-~e~~~~~~~~~~dG~ 706 (955)
..+...+.+|+++++|+++..++||.++|++|+++. +++||+|...+.+.+..+++++. ... .++++ +++||.
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~----~~kdG~ 240 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL-VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRF----RTRNGE 240 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH-HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEE----ECTTSC
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHH-HhCCHHHHHHHHHHHHHHHhcCCceeeceEEEE----EccCCC
Confidence 457778999999999999999999999999999999 99999999999988888887543 333 46777 789999
Q ss_pred EEEEEEEEEEeecC-CCCEEEEEEEEecchH
Q 002191 707 VVYILVNACTSRDY-KNNVKGVCFVGQDITH 736 (955)
Q Consensus 707 ~~~v~v~~~pi~d~-~g~v~gvv~v~~DITe 736 (955)
++|++....++++. ++++..++++.+-++.
T Consensus 241 ~vwvet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 241 YITLDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 99999999999886 5677778887765554
No 153
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.19 E-value=2e-07 Score=116.69 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeE--EEEE--ecCCCC--C--CccCCCCCCCC
Q 002191 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE--VVSE--IRRSDL--E--PYLGIHFPAND 285 (955)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~--viaE--~~~~~~--~--s~lg~~~p~~d 285 (955)
..+.++...|.+ +.+++++++.+++.+++++|+||+.||.+++++.|. .++. ....+. + +..+.+||...
T Consensus 153 ~~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~ 230 (878)
T 3bjc_A 153 SRLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc
Confidence 345566667776 679999999999999999999999999999987643 3321 111111 1 23445555431
Q ss_pred chHHHHHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEE-cCCCCCcee
Q 002191 286 IPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLW 364 (955)
Q Consensus 286 ip~~~r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~-~~~~~~~LW 364 (955)
--+...+..+.+..|+|+...|- -..........+++|.|++||+. +| ++|
T Consensus 231 --gi~g~v~~~g~pv~I~D~~~dp~----------------------f~~~~~~~~~~~~~S~L~vPL~~~~g----~vi 282 (878)
T 3bjc_A 231 --GIVGHVAALGEPLNIKDAYEDPR----------------------FNAEVDQITGYKTQSILCMPIKNHRE----EVV 282 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cHHHHHHhcCceEEeCCcccCcc----------------------cccccccccCCccceEEEEeeEcCCC----CEE
Confidence 12334556677777777765432 01112223456789999999998 77 999
Q ss_pred EEEEeecCCCC---CCChhHHHHHHHHHHHHHHHHHHH
Q 002191 365 GLVVCHHTSPR---YIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 365 Gll~~hh~~pr---~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
|+|.++++.++ .|+.+...+++.++.++++.|..+
T Consensus 283 GvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~na 320 (878)
T 3bjc_A 283 GVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNA 320 (878)
T ss_dssp --------------------------------------
T ss_pred EEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754 899999999999999999988743
No 154
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.49 E-value=2e-07 Score=101.55 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=84.4
Q ss_pred HHHHhcCccEEEEcCCCcEeeecHHHHHHhC---CCchhhcCCCccccccccc---cHH--HHHHHHHHHHcC-CCcceE
Q 002191 622 RLIETATAPIFGVDSSGTINGWNAKVAELTG---LPASEAMGKSLIDEVVHEE---SQG--AVENLICRALLG-EEDKNV 692 (955)
Q Consensus 622 ~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G---~~~eeliG~~~~~~l~~~~---~~~--~~~~~l~~~l~~-~~~~~~ 692 (955)
.+++++++||+++|.+|+|+++|+++.++|+ ++ ++++|+++. +++... ... .+...+..++.+ +.....
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~-el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLI-DATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 3567999999999999999999999999985 44 688999988 766543 110 122222223433 222221
Q ss_pred EEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHH
Q 002191 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753 (955)
Q Consensus 693 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~ 753 (955)
++. ....++.++..|+++ +|++.|++.+++|||+.++.+++|+......+.
T Consensus 252 ei~---------~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~IrE 302 (305)
T 2ykf_A 252 EVD---------AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIRE 302 (305)
Confidence 211 123567888899986 578889999999999999999999766554443
No 155
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.95 E-value=1.4e-05 Score=85.00 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHhHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhhcc-cCccccccC
Q 002191 884 LEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES-SSISENQRQYLETSDACERQIMTIIDG-MDLRCIEEG 955 (955)
Q Consensus 884 ~aE~~~~ak~~fla~iSHELRnPL~~I~g~~~LL~~-~~l~~~~~~~l~~i~~~a~rl~~LI~D-Ld~SrIeaG 955 (955)
..++..+.+.+|++.++|||||||++|.++.+++.. ...+++.+++++.+..+++++..++++ +++++++.|
T Consensus 32 ~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 32 ALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344455677899999999999999999999999986 346788899999999999999999999 899887653
No 156
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.94 E-value=0.00037 Score=70.17 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=102.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHH
Q 002191 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLT-GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (955)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~-g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~l 293 (955)
++..+-.-+.. ..|+.+.++.+++.+.+.+ +++++.+|-++++ .-+++.... ... ..+||-.. --+-.-
T Consensus 30 ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G--~~~--~~~i~~Ge--Gi~G~a 99 (195)
T 1vhm_A 30 LNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQG--KIA--CVRIPVGR--GVCGTA 99 (195)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEE--SCC--CSEEETTS--HHHHHH
T ss_pred HHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecC--ccc--ceEecCCC--ChHHHH
Confidence 44444444555 5699999999999999999 9999999999762 233332221 111 34444332 124456
Q ss_pred HHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCC
Q 002191 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS 373 (955)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~ 373 (955)
...++.-+|+|+...|--+ .| ..+++|.|+|||+.+| ++.|.|.+....
T Consensus 100 a~tg~~i~V~Dv~~~p~~~---------------------~~------~~~~~S~l~VPI~~~g----~viGVL~i~s~~ 148 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHI---------------------AC------DAASNSEIVLPLVVKN----QIIGVLDIDSTV 148 (195)
T ss_dssp HHHTSCEEESCTTTCTTCC---------------------CS------CCCCSEEEEEEEEETT----EEEEEEEEEESS
T ss_pred HhcCCEEEECCcccCcchh---------------------hc------CCCccEEEEEeEeECC----EEEEEEEecCCC
Confidence 7788999999998754311 01 1257999999999988 999999999988
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Q 002191 374 PRYIPFPLRYACEFLVQAFSLQLY 397 (955)
Q Consensus 374 pr~~~~~~r~~~~~l~~~~~~~l~ 397 (955)
|+.+..+...+++.++.+++..|+
T Consensus 149 ~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 149 FGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998888775
No 157
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.77 E-value=0.00069 Score=65.67 Aligned_cols=130 Identities=13% Similarity=0.191 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEeecCC
Q 002191 228 GGDIGLLCDTVVEDVQKLTG-YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (955)
Q Consensus 228 ~~~~~~~~~~~v~~vr~~~g-~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~ 306 (955)
..|+.+.++.++..+.+.++ +|++.+|-+++ ++.+..+... ... -.++|-.. --.-.-+..++..+|+|+.
T Consensus 29 ~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G-~~a--~~ri~~Ge--Gv~G~aa~~~~~i~V~Dv~ 100 (160)
T 3ksh_A 29 EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQG-HPA--CVHIPIGK--GVCGTAVSERRTQVVADVH 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEE-SCC--CSEEETTS--HHHHHHHHHTSCEEESCGG
T ss_pred CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccC-Ccc--cEEeeCCC--CHHHHHHhhCCEEEECCcc
Confidence 46999999999999999997 99999999974 3444332211 111 12333322 1344556789999999998
Q ss_pred CCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHH
Q 002191 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (955)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~ 386 (955)
..|--+ .| ..+++|-++|||+.+| +++|.|...+..++.++.+...+++
T Consensus 101 ~~p~~i---------------------~~------~~~~~Sei~VPI~~~g----~viGVL~i~s~~~~~F~e~D~~~L~ 149 (160)
T 3ksh_A 101 QFKGHI---------------------AC------DANSKSEIVVPIFKDD----KIIGVLDIDAPITDRFDDNDKEHLE 149 (160)
T ss_dssp GSTTCC---------------------GG------GTTCSEEEEEEEEETT----EEEEEEEEEESSSSCCCHHHHHHHH
T ss_pred cCcccc---------------------cc------CcccCceEEEEEEECC----EEEEEEEEecCCCCCCCHHHHHHHH
Confidence 755311 11 2357999999999998 9999999999889889999999999
Q ss_pred HHHHHHHHHH
Q 002191 387 FLVQAFSLQL 396 (955)
Q Consensus 387 ~l~~~~~~~l 396 (955)
.++.+++..+
T Consensus 150 ~lA~~la~~~ 159 (160)
T 3ksh_A 150 AIVKIIEKQL 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9888887554
No 158
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.73 E-value=0.0006 Score=67.89 Aligned_cols=132 Identities=8% Similarity=0.029 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHHHHHh-----CCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEe
Q 002191 228 GGDIGLLCDTVVEDVQKLT-----GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302 (955)
Q Consensus 228 ~~~~~~~~~~~v~~vr~~~-----g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i 302 (955)
..++.++++.+++.+.+.+ +++++.+|-++++..++.+.-...... . ..+||...= -+-.-...++.-+|
T Consensus 39 ~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~-~--~~~i~~g~G--i~G~aa~~g~~v~v 113 (180)
T 1f5m_A 39 QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKV-A--CQMIQFGKG--VCGTAASTKETQIV 113 (180)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESC-C--CSEEETTSH--HHHHHHHHTSCEEE
T ss_pred CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCc-c--ceeecCCCc--chhhhhhcCCEEEe
Confidence 4689999999999999998 999999999998764555432111111 1 244444321 23345667888899
Q ss_pred ecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEE-cCCCCCceeEEEEeecCCCCCCChhH
Q 002191 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLWGLVVCHHTSPRYIPFPL 381 (955)
Q Consensus 303 ~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~-~~~~~~~LWGll~~hh~~pr~~~~~~ 381 (955)
+|+...|--+ .| ..+++|.|++||+. +| ++.|.|.+++..++.+....
T Consensus 114 ~Dv~~dp~~~---------------------~~------~~~~~S~l~vPi~~~~g----~viGVL~l~s~~~~~F~~~d 162 (180)
T 1f5m_A 114 PDVNKYPGHI---------------------AC------DGETKSEIVVPIISNDG----KTLGVIDIDCLDYEGFDHVD 162 (180)
T ss_dssp SCGGGSTTCC---------------------CS------STTCCEEEEEEEECTTS----CEEEEEEEEESSTTCCCHHH
T ss_pred CCcccCcccc---------------------cc------CcccceEEEEEEEcCCC----eEEEEEEeccCCCCCcCHHH
Confidence 9988654311 11 24789999999998 77 99999999998898899999
Q ss_pred HHHHHHHHHHHHHH
Q 002191 382 RYACEFLVQAFSLQ 395 (955)
Q Consensus 382 r~~~~~l~~~~~~~ 395 (955)
..+++.++.+++..
T Consensus 163 ~~~L~~la~~~a~~ 176 (180)
T 1f5m_A 163 KEFLEKLAKLINKS 176 (180)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888887764
No 159
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.56 E-value=0.0022 Score=62.83 Aligned_cols=144 Identities=11% Similarity=0.015 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHH
Q 002191 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTG-YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (955)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g-~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~ 290 (955)
.|..+..-+++|-+- ..|+.+.++.++..+.+.++ ++++.+|-+++ ++.+..+.. +.+. ..+||-.. --+
T Consensus 15 ~~~~ll~~l~~ll~~-~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~-G~~a--~~ri~~Ge--Gv~ 85 (171)
T 3rfb_A 15 RYQMLNEELSFLLEG-ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQ-GGVS--CIRIALGK--GVC 85 (171)
T ss_dssp HHHHHHHHHHHHHTT-CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEE-SSSC--CCEEETTS--HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEecc-CCcc--ceEeeCCc--CHH
Confidence 344333334444321 56999999999999999997 99999999875 354433211 1111 12333221 134
Q ss_pred HHHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEee
Q 002191 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH 370 (955)
Q Consensus 291 r~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~h 370 (955)
-.-+..++.-+|+|+...|--+ .| ..+++|-++|||+.+| +++|.|...
T Consensus 86 G~va~tg~~i~V~Dv~~~p~~i---------------------~~------~~~~~Sei~VPI~~~g----~viGVL~i~ 134 (171)
T 3rfb_A 86 GEAAHFQETVIVGDVTTYLNYI---------------------SC------DSLAKSEIVVPMMKNG----QLLGVLDLD 134 (171)
T ss_dssp HHHHHTTSCEEESCTTSCSSCC---------------------CS------CTTCCEEEEEEEEETT----EEEEEEEEE
T ss_pred HHHHhhCCEEEECCcccCcccc---------------------cc------CcccCceEEEEEEECC----EEEEEEEEe
Confidence 4567789999999999766421 01 1257899999999998 999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHH
Q 002191 371 HTSPRYIPFPLRYACEFLVQAFSLQ 395 (955)
Q Consensus 371 h~~pr~~~~~~r~~~~~l~~~~~~~ 395 (955)
+..++.++.+...+++.++.+++..
T Consensus 135 s~~~~~F~e~D~~~L~~lA~~la~~ 159 (171)
T 3rfb_A 135 SSEIEDYDAMDRDYLEQFVAILLEK 159 (171)
T ss_dssp ESSTTCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9889889999899888888877654
No 160
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.54 E-value=4.8e-05 Score=79.35 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHhhcc-cCcccccc
Q 002191 890 YAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS-ENQRQYLETSDACERQIMTIIDG-MDLRCIEE 954 (955)
Q Consensus 890 ~ak~~fla~iSHELRnPL~~I~g~~~LL~~~~l~-~~~~~~l~~i~~~a~rl~~LI~D-Ld~SrIea 954 (955)
+.+.+|++.++|||||||++|.++.+++.....+ ++.+++++.+..+++++..++++ +++++.+.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~ 78 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAP 78 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566889999999999999999999999875554 45788999999999999999999 89988764
No 161
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.44 E-value=0.00019 Score=64.85 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHhHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCc
Q 002191 885 EDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDL 949 (955)
Q Consensus 885 aE~~~~ak~~fla~iSHELRnPL~~I~g~~~LL~~~~l~~~~~~~l~~i~~~a~rl~~LI~D-Ld~ 949 (955)
.++....+.+|++.++||+||||+.|.++.+++.. +..++++.+..++.+|..+|++ |+|
T Consensus 53 l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 53 LKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444567789999999999999999999998864 2345569999999999999999 775
No 162
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.44 E-value=0.00013 Score=82.25 Aligned_cols=66 Identities=8% Similarity=-0.004 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhhHhHhHH-HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCccccccC
Q 002191 890 YAKIKELAYIRQEVKNPLNGIR-FVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLRCIEEG 955 (955)
Q Consensus 890 ~ak~~fla~iSHELRnPL~~I~-g~~~LL~~~~l~~~~~~~l~~i~~~a~rl~~LI~D-Ld~SrIeaG 955 (955)
..+.+|++.++||+||||+.|. |+.++++....+++.+++++.+..+..+|..||++ |++++++.|
T Consensus 119 ~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~ 186 (388)
T 1gkz_A 119 AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPD 186 (388)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4677899999999999999999 88888876555777899999999999999999999 999998764
No 163
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.25 E-value=1.1e-05 Score=83.03 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHhhcc-cCccccccC
Q 002191 892 KIKELAYIRQEVKNPLNGIRFVHKLLESSSIS-ENQRQYLETSDACERQIMTIIDG-MDLRCIEEG 955 (955)
Q Consensus 892 k~~fla~iSHELRnPL~~I~g~~~LL~~~~l~-~~~~~~l~~i~~~a~rl~~LI~D-Ld~SrIeaG 955 (955)
+.+|++.++|||||||++|.++.+++.....+ ++.+++++.+..+++++..++++ +++++++.|
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 67 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSL 67 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34789999999999999999999998764433 44578888899999999999999 899987653
No 164
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=97.23 E-value=0.007 Score=57.90 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHH
Q 002191 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291 (955)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r 291 (955)
.++++-.+-..|- +.+.+++++.+++..++++|+||..+|-+++| |+....+-. | | ..|
T Consensus 13 rLrlL~e~~~~L~---~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~-------G---~------~~~ 71 (160)
T 3cit_A 13 RLRLLVDTGQELI---QLPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARH-------G---S------KER 71 (160)
T ss_dssp HHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEE-------S---C------HHH
T ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--Cceeeeecc-------C---c------hhh
Confidence 4566666666664 44679999999999999999999999999996 444332211 2 0 011
Q ss_pred HHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEE-EcCCCCCceeEEEEee
Q 002191 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVCH 370 (955)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~-~~~~~~~~LWGll~~h 370 (955)
...+|+++|.+.....- + +..-+..++-|+||+. .+| +.+|.+.+=
T Consensus 72 ----l~~lr~~~~~~~~gpr~-----------------------~--~~tg~~t~svl~vPL~~~~g----~~~Gvlql~ 118 (160)
T 3cit_A 72 ----LSTLETTADPLAIGPQW-----------------------L--ERPGTHLPCVLLLPLRGADE----GSFGTLVLA 118 (160)
T ss_dssp ----HTTSCCCCCTTCCSCEE-----------------------E--ECTTSSSCEEEEEEEECSSS----SEEEEEEEE
T ss_pred ----hhhhhcccccccccccc-----------------------c--cccCcccceeEEEeeecCCC----cEEEEEEEe
Confidence 34555566655432000 0 1334456889999995 555 999999997
Q ss_pred cCC-CCCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 371 HTS-PRYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 371 h~~-pr~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
+.. ...+..+....++.|+.+++.+|+..
T Consensus 119 N~~~~~~f~~eD~e~l~lLA~~~a~aien~ 148 (160)
T 3cit_A 119 NSVAISAPDGEDIESLQLLATLLAAHLENN 148 (160)
T ss_dssp ESSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 775 55789999999999999999988654
No 165
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=97.07 E-value=8.4e-05 Score=92.92 Aligned_cols=142 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCC---C------CCCccCCCCCCCCchHHHHHHHHhCCE
Q 002191 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS---D------LEPYLGIHFPANDIPQAARFLFKQNRV 299 (955)
Q Consensus 229 ~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~---~------~~s~lg~~~p~~dip~~~r~ly~~~~~ 299 (955)
.+++++++.+++.+++++|+||+.||-+++++. +.++.+... . ..+.-+.++|... .-+...+..+.+
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~-~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDCS-DSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCccc-chhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 589999999999999999999999999998653 444433221 1 1111133444321 112334556666
Q ss_pred EEeecCCCCCcccccccccCCccccccccccCCChhhHHHHhh---cCceeEEEEEEEEc--CCCCCceeEEEEeecCCC
Q 002191 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTN---MGSIASLVMAVIIN--SKDSMKLWGLVVCHHTSP 374 (955)
Q Consensus 300 r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n---~gv~asl~v~i~~~--~~~~~~LWGll~~hh~~p 374 (955)
..|+|+...|- . +.+...... .++++.|++||+.. | +++|.|...++.+
T Consensus 425 v~i~D~~~d~r--~--------------------~~~~~~~~g~~~~~~rS~L~vPL~~~~~g----~viGVL~l~~~~~ 478 (878)
T 3bjc_A 425 LNIPDVSKDKR--F--------------------PWTTENTGNVNQQCIRSLLCTPIKNGKKN----KVIGVCQLVNKME 478 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCcccccc--c--------------------ccccccccCccccccceEEEEEEecCCCC----cEEEEEEEEEcCC
Confidence 67777664432 0 111111222 67899999999986 7 9999999988875
Q ss_pred ------CCCChhHHHHHHHHHHHHHHHHHHH
Q 002191 375 ------RYIPFPLRYACEFLVQAFSLQLYME 399 (955)
Q Consensus 375 ------r~~~~~~r~~~~~l~~~~~~~l~~~ 399 (955)
+.|+.....+++.++.++++.|+.+
T Consensus 479 ~~~G~~~~Ft~~d~~lL~~lA~~aaiAIena 509 (878)
T 3bjc_A 479 ENTGKVKPFNRNDEQFLEAFVIFCGLGIQNT 509 (878)
T ss_dssp -------------------------------
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999988888643
No 166
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=96.53 E-value=0.0057 Score=54.82 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCccc
Q 002191 889 IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLRC 951 (955)
Q Consensus 889 ~~ak~~fla~iSHELRnPL~~I~g~~~LL~~~~l~~~~~~~l~~i~~~a~rl~~LI~D-Ld~Sr 951 (955)
...+.+|++.++||++||++.|.+..+.+... ..++.+.+...+.++..++++ ++++|
T Consensus 57 ~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 57 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567889999999999999999999887642 256788899999999999999 88875
No 167
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.50 E-value=0.0026 Score=58.50 Aligned_cols=98 Identities=5% Similarity=0.026 Sum_probs=74.0
Q ss_pred CccEEEEcCCCcEeeecHHHHHHhCCCc--hhhcCCCccccccccccHH--HHHHHHHHHHcCCCcceEEEEEEeeeecc
Q 002191 628 TAPIFGVDSSGTINGWNAKVAELTGLPA--SEAMGKSLIDEVVHEESQG--AVENLICRALLGEEDKNVELKLRKFELQK 703 (955)
Q Consensus 628 ~~~I~~~D~dg~i~~~N~~~~~l~G~~~--eeliG~~~~~~l~~~~~~~--~~~~~l~~~l~~~~~~~~e~~~~~~~~~~ 703 (955)
...+.-.|.+|+|+++..+.. ..++.+ +|++|+.+. ++.|++|.. .+.+..+.++..+.....-+++ +.+
T Consensus 7 e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy-~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRf----r~k 80 (132)
T 1oj5_A 7 ESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIY-AFFQPQGREPSYARQLFQEVMTRGTASSPSYRF----ILN 80 (132)
T ss_dssp CEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHH-HHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEE----ECT
T ss_pred eeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHH-HHhCcccchHHHHHHHHHHHHHcCCccccceEE----Eec
Confidence 345566799999999999887 477777 899999999 999999865 7888888888766555555666 568
Q ss_pred CCcEEEEEEEEEEeecCC-CCEEEEEEEE
Q 002191 704 QHSVVYILVNACTSRDYK-NNVKGVCFVG 731 (955)
Q Consensus 704 dG~~~~v~v~~~pi~d~~-g~v~gvv~v~ 731 (955)
+|+.+|+......+++.. +++..++++.
T Consensus 81 ~g~~V~~qT~sk~f~np~t~e~e~Ivs~n 109 (132)
T 1oj5_A 81 DGTMLSAHTRCKLCYPQSPDMQPFIMGIH 109 (132)
T ss_dssp TSCEEEEEEEEEEECC----CCCEEEEEE
T ss_pred CCcEEEEEEEEEEecCCCCCCCCEEEEEE
Confidence 999999999998888752 3334444443
No 168
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.47 E-value=0.0033 Score=57.85 Aligned_cols=100 Identities=7% Similarity=-0.042 Sum_probs=73.5
Q ss_pred eeeecCCCcEeeecHHHHHHhCCCh--hhhccCCccchhcccchhccChhhHH--HHHHHHHhhhcCCCcceeeEEEEcC
Q 002191 765 IFASDENACCSEWNAAMEKVTGWMR--HEVIGKMLPREIFGNFCRMKGQDMLT--KFMILLYQGITGQGTENFPFGFFNR 840 (955)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~--eeviGk~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~g~~~~~~e~~~~~~ 840 (955)
+.-.|.+|+++++...... .++.. +|++|+.+.+ +.|++|.. .+...+.+++..+.....-||++.+
T Consensus 10 ~sRh~~dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~--------f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k 80 (132)
T 1oj5_A 10 MTKQDTTGKIISIDTSSLR-AAGRTGWEDLVRKCIYA--------FFQPQGREPSYARQLFQEVMTRGTASSPSYRFILN 80 (132)
T ss_dssp EEEECTTCCEEEEECHHHH-TTCCSCHHHHHHHHHHH--------HTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred EEeecCCCcEEEEeccccc-ccccccHHHHHHHHHHH--------HhCcccchHHHHHHHHHHHHHcCCccccceEEEec
Confidence 5567999999999998874 67777 8999998553 55677744 5667677777666677888999999
Q ss_pred CCcEEEEEEEEeeeeCCC-CCEEEEEEEEeccCc
Q 002191 841 QGQFVEVALTASRRTDAE-GKVIGCFCFMQILVP 873 (955)
Q Consensus 841 dG~~~~v~~~~~pi~d~~-G~v~g~v~i~~DITe 873 (955)
+|.++|+......+++.. +++-.++++-.-+.+
T Consensus 81 ~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 81 DGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp TSCEEEEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred CCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 999999999988887742 344445565444443
No 169
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=96.45 E-value=0.0016 Score=73.38 Aligned_cols=60 Identities=7% Similarity=-0.015 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhh-----HhHhHHHHHHHhccCCCCHH----HHHHHH--HHHHHHHHHHHhhcc-cCcccccc
Q 002191 893 IKELAYIRQEVKN-----PLNGIRFVHKLLESSSISEN----QRQYLE--TSDACERQIMTIIDG-MDLRCIEE 954 (955)
Q Consensus 893 ~~fla~iSHELRn-----PL~~I~g~~~LL~~~~l~~~----~~~~l~--~i~~~a~rl~~LI~D-Ld~SrIea 954 (955)
.+|++.++||||| ||+.|.|+.+++.....++. ..++++ .+.+.+.+| +|++ |+++++++
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~ 167 (394)
T 2btz_A 96 LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGST 167 (394)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccc
Confidence 3578899999999 88888999999986444533 445888 488888899 9999 99999875
No 170
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.17 E-value=0.0061 Score=68.66 Aligned_cols=58 Identities=7% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhh-----HhHhHHHHHHHhccCC----CCHHHHHHHH--HHHHHHHHHHHhhcc-cC-cccc
Q 002191 893 IKELAYIRQEVKN-----PLNGIRFVHKLLESSS----ISENQRQYLE--TSDACERQIMTIIDG-MD-LRCI 952 (955)
Q Consensus 893 ~~fla~iSHELRn-----PL~~I~g~~~LL~~~~----l~~~~~~~l~--~i~~~a~rl~~LI~D-Ld-~SrI 952 (955)
.++++.++||||| ||+.|.|+.++++... ..++..++++ .+.+.+.+| +|++ |+ ++++
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~ 166 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS 166 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc
Confidence 3567889999999 8888899999887532 3455688999 688889999 9999 87 6665
No 171
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=95.78 E-value=0.0084 Score=67.82 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhh-----HhHhHHHHHHHhccCCCC----HHHHHHHHH--HHHHHHHHHHhhcc-cCcccccc
Q 002191 894 KELAYIRQEVKN-----PLNGIRFVHKLLESSSIS----ENQRQYLET--SDACERQIMTIIDG-MDLRCIEE 954 (955)
Q Consensus 894 ~fla~iSHELRn-----PL~~I~g~~~LL~~~~l~----~~~~~~l~~--i~~~a~rl~~LI~D-Ld~SrIea 954 (955)
+++..++||||| ||+.|.|+.++++....+ ++..++++. +.+.+.+| ||++ |+++++|+
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~ 177 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKG 177 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccc
Confidence 344555599999 999999999988864433 345778887 77778888 9999 99999864
No 172
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=93.74 E-value=0.054 Score=61.32 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=38.5
Q ss_pred HHHHHHHhhhHhH-----hHHHHHHHhccCCCC----HHHHHHHHHHHHH--HHHHHHhhcc-cCcc
Q 002191 896 LAYIRQEVKNPLN-----GIRFVHKLLESSSIS----ENQRQYLETSDAC--ERQIMTIIDG-MDLR 950 (955)
Q Consensus 896 la~iSHELRnPL~-----~I~g~~~LL~~~~l~----~~~~~~l~~i~~~--a~rl~~LI~D-Ld~S 950 (955)
++.++|||||||+ .|.|+.++++....+ ++..++++.+..+ +.+| +|++ |.+.
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~ 185 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLF 185 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 4566799999999 778999988753222 4466788886655 7777 8888 5443
No 173
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=93.44 E-value=3.2 Score=37.86 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCC-ccC----CCCCCCCchHHHHHHHHhCCEEEeec
Q 002191 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP-YLG----IHFPANDIPQAARFLFKQNRVRMICD 304 (955)
Q Consensus 230 ~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s-~lg----~~~p~~dip~~~r~ly~~~~~r~i~d 304 (955)
+.++..+....-++++.|+-=..||-||....--.=|-|+ |+++ |+- +..-...||--- .+.++..--+..
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~--~~pa~~l~~~r~mpl~p~k~pllk-~~lr~~~hll~~- 88 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARST--GLPASFLPVFREMPLAPDKIPLLK-SMLRKRQHLMLT- 88 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEE--SCCGGGHHHHHHCCBCTTTCHHHH-HHHHHTCCEEES-
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhcccccccc--CCchhhhHHHhhCCCCCCccHHHH-HHHHhcCccccC-
Confidence 7888888888899999999999999999876554444443 3332 221 111111233222 111111111111
Q ss_pred CCCCCcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCC-CCChhHHH
Q 002191 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR-YIPFPLRY 383 (955)
Q Consensus 305 ~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr-~~~~~~r~ 383 (955)
|-+.|+| ..|-...+++|+.+-+ ||+++++ +.=|.+.+-..+.| .++++++.
T Consensus 89 ------------------dp~~s~l--~tp~l~k~~~~~~ILg---VPL~~g~----qVIGVLFaArR~~R~~Fs~dEiA 141 (162)
T 3eea_A 89 ------------------DPGSSDL--LTPKLRKLLRNLCVLA---VPMVVRT----QVIGAVFMARTRDNPPFSDAETA 141 (162)
T ss_dssp ------------------CGGGCTT--SCHHHHHHTTTEEEEE---EEEEETT----EEEEEEEEEEETTSCCCCHHHHH
T ss_pred ------------------CCCcchh--ccHHHHHHHhhCeEEE---ecceeCC----EEEEEEEEecccccCCCCHHHHH
Confidence 1122333 2688899999997755 9999998 99999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002191 384 ACEFLVQAFSLQLYME 399 (955)
Q Consensus 384 ~~~~l~~~~~~~l~~~ 399 (955)
++..|+.+.++.++.+
T Consensus 142 LL~SLAahAAIAIdnA 157 (162)
T 3eea_A 142 IIRDLVSHAALVVSHM 157 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888643
No 174
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=91.67 E-value=0.23 Score=50.05 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhhcc
Q 002191 890 YAKIKELAYIRQEVKNPLNGIRFVHKLLES--SSISENQRQYLETSDACERQIMTIIDG 946 (955)
Q Consensus 890 ~ak~~fla~iSHELRnPL~~I~g~~~LL~~--~~l~~~~~~~l~~i~~~a~rl~~LI~D 946 (955)
..+.++...++|++++||++|....+++.. ...+++..+.++.+...++++...+++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~ 84 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRK 84 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999888874 233344667788877777777766666
No 175
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=88.09 E-value=4.4 Score=43.83 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=46.7
Q ss_pred eeeecC-CCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcC-CC
Q 002191 765 IFASDE-NACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNR-QG 842 (955)
Q Consensus 765 I~~~D~-~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~-dG 842 (955)
++++|. +++|+.+|....+++|+++++++|+++.+ +.+++....+...+... .......+++++... +|
T Consensus 45 Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~--------ll~~~~~~~l~~~l~~~-~~~~~~p~~~~~~~~~~~ 115 (337)
T 2ool_A 45 LFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAH--------YLTAASAARLTHALHGG-DPAAINPIRLDVVTPDGE 115 (337)
T ss_dssp EEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGG--------GBCHHHHHHHHHHHCC-----CCCSEEEEEEETTEE
T ss_pred EEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHH--------HcCHHHHHHHHHHHhcC-CccccCcEEEEEeccCCC
Confidence 445665 58999999999999999999999998653 33466655544443211 111122334444443 35
Q ss_pred cEEEEEEEE
Q 002191 843 QFVEVALTA 851 (955)
Q Consensus 843 ~~~~v~~~~ 851 (955)
+.+|+.+..
T Consensus 116 ~~f~~~~Hr 124 (337)
T 2ool_A 116 RAFNGILHR 124 (337)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 555554443
No 176
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=86.62 E-value=14 Score=37.57 Aligned_cols=145 Identities=9% Similarity=-0.040 Sum_probs=86.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCC
Q 002191 219 AISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNR 298 (955)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~ 298 (955)
.+.++.. +.+.+++.+.+ ..+.+.+|||++.++-+.+...+ .+ ..+ -.+..|+...+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~-----i~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYH-----FLSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEE-----EEECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeE-----eeCCCCHHHHHHHHHCC
Confidence 4566777 55888888887 88889999999999877653211 00 001 12345788888888776
Q ss_pred EEEeecCCCCCccccc-ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCC
Q 002191 299 VRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (955)
Q Consensus 299 ~r~i~d~~~~~~~l~~-~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~ 377 (955)
...+ . |++. .-....|+.-+....+. .+.-.++.+.+|++.-+++|+.-.+ ..+|+++.....+. .
T Consensus 71 y~~~-----D--Pv~~~~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~~----g~~g~ls~~~~~~~-~ 137 (237)
T 3szt_A 71 YTSI-----D--PIVRHGLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGKY----GLISMLSLVRSSES-I 137 (237)
T ss_dssp GGGT-----C--HHHHHHHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECGG----GCEEEEEEEESSSC-C
T ss_pred Cccc-----C--hHhhhhcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCCC----CCeEEEEEecCCCc-C
Confidence 4322 1 2221 01112233332222222 2455677889999999999998665 88999998866542 3
Q ss_pred ChhHHHHHHHHHHHHH
Q 002191 378 PFPLRYACEFLVQAFS 393 (955)
Q Consensus 378 ~~~~r~~~~~l~~~~~ 393 (955)
...+........+.++
T Consensus 138 ~~~~~~~~~~~~~~l~ 153 (237)
T 3szt_A 138 AATEILEKESFLLWIT 153 (237)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4444443333333333
No 177
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=86.53 E-value=7.6 Score=38.59 Aligned_cols=125 Identities=9% Similarity=0.003 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCc--cEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcce
Q 002191 614 SSVACEMVRLIETATA--PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN 691 (955)
Q Consensus 614 ~~~~~~l~~lie~~~~--~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 691 (955)
......+..+.+..+. .++++|.+|+++..+.. ...+. ...+++.+... +..+...-
T Consensus 54 ~~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~----------~~~~~-------~~~~r~~f~~a----~~~~~~~i 112 (217)
T 4dah_A 54 KKMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE----------LKTKV-------NLADRSFFIKA----KETKKTVI 112 (217)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC----------CSSCC-------BCTTSHHHHHH----HHHCSCEE
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC----------CCCCC-------CcchhHHHHHH----HhcCCcEE
Confidence 3444556666666554 68889999999876430 01111 11233433333 33222211
Q ss_pred EEEEEEeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCC
Q 002191 692 VELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDEN 771 (955)
Q Consensus 692 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~ 771 (955)
.+... -...|. ++..-+.|+++.+|+++|++++..++...... +..+ ... .-++++|.+
T Consensus 113 s~~~~----~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~----------~~~~--~~g---g~~~l~d~~ 171 (217)
T 4dah_A 113 SDSYS----SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKNL----------INLL--SPD---VYIEVVNQD 171 (217)
T ss_dssp CCCEE----CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHHH----------HHHH--CTT---SCEEEEETT
T ss_pred eceEE----cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHHH----------HHhc--CCC---cEEEEEcCC
Confidence 11111 123454 56677889999899999999887776543221 1111 111 248999999
Q ss_pred CcEeeecHH
Q 002191 772 ACCSEWNAA 780 (955)
Q Consensus 772 g~i~~~N~a 780 (955)
|++++....
T Consensus 172 G~ii~~~~~ 180 (217)
T 4dah_A 172 GKMIFASGQ 180 (217)
T ss_dssp SCEEEEESC
T ss_pred CCEEEeCCC
Confidence 998876543
No 178
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=86.48 E-value=0.29 Score=54.46 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhhcc-cCcc
Q 002191 890 YAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLR 950 (955)
Q Consensus 890 ~ak~~fla~iSHELRnPL~~I~g~~~LL~~~~l~~~~~~~l~~i~~~a~rl~~LI~D-Ld~S 950 (955)
..|.+|+.+++|||++|++.|.+..+.+.. +.+.++++++.+++++ ++++
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~ 58 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVV 58 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999887665543 4466677777777777 5543
No 179
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=78.86 E-value=2.9 Score=38.05 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEeecCCCCCccccc
Q 002191 235 CDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314 (955)
Q Consensus 235 ~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~~~l~~ 314 (955)
++..++-+.+.||+ =|.|- |. -.|+|=+- .+-..|++ ..|++..++....+++.++.+... .++..
T Consensus 4 a~~~AeiI~~~~~~-aV~It--D~---~~ilA~~G-~g~~~~~~-----~~is~~~~~~i~~~k~~~~~~~~~--~~~~~ 69 (123)
T 2w1r_A 4 AKEYADALYDSLGH-SVLIC--DR---DVYIAVSG-SSKKDYLN-----KSISEMLERTMDQRSSVLESDAKS--VQLVN 69 (123)
T ss_dssp HHHHHHHHHHHHCS-EEEEE--CS---SBEEEEES-SCHHHHBT-----CBBCHHHHHHHHHCSCEEESSCEE--EESBT
T ss_pred HHHHHHHHHHHHCC-eEEEE--cC---ccEEEEEe-cChhhcCC-----CccCHHHHHHHHcCCEEEEcCCcc--ccccC
Confidence 45667779999999 67664 22 23455432 11222333 466888899999999999866442 21110
Q ss_pred ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHHHHHHHHH
Q 002191 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394 (955)
Q Consensus 315 ~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~~l~~~~~~ 394 (955)
. + +-...|.+++||+.+| +.=|.|.-. +..+.+..-++.+.+-+|+.||.
T Consensus 70 ~------------------~-------~~~~~s~ii~PI~~~g----~viG~i~l~-~~~~~~~~~~~~la~gla~lls~ 119 (123)
T 2w1r_A 70 G------------------I-------DEDMNSYTVGPIVANG----DPIGAVVIF-SKDQTMGEVEHKAVETAAGFLAR 119 (123)
T ss_dssp T------------------C-------EEEESEEEEEEEEETT----EEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC-
T ss_pred C------------------C-------CCCeeEEEEEEEEECC----EEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHH
Confidence 0 0 0134889999999999 999999998 66666899999999999999999
Q ss_pred HHH
Q 002191 395 QLY 397 (955)
Q Consensus 395 ~l~ 397 (955)
||+
T Consensus 120 Qme 122 (123)
T 2w1r_A 120 QME 122 (123)
T ss_dssp ---
T ss_pred Hhc
Confidence 985
No 180
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=76.38 E-value=7.8 Score=35.37 Aligned_cols=77 Identities=21% Similarity=0.082 Sum_probs=44.8
Q ss_pred CCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCC
Q 002191 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (955)
Q Consensus 763 d~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG 842 (955)
+-|++.|.+|..+.... .+.+|+++.. .+. +..++.|+. +.. .. .|
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~~-----------~~~-------~~~al~G~~-~~~---~~--~g 96 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSMEG-----------GDS-------DEALINAKS-YVS---VR--KG 96 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCCS-----------SCC-------HHHHHHCCC-EEE---EE--EE
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCcccC-----------CCc-------HHHHhCCCe-EEE---EE--Ec
Confidence 35899999998776532 2346665331 011 223345553 211 11 22
Q ss_pred cEEEEEEEEeeeeCCCCCEEEEEEEEeccCc
Q 002191 843 QFVEVALTASRRTDAEGKVIGCFCFMQILVP 873 (955)
Q Consensus 843 ~~~~v~~~~~pi~d~~G~v~g~v~i~~DITe 873 (955)
...+......|+++.+|+++|++++..++..
T Consensus 97 ~~g~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 97 SLGSSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp TTEEEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred cceeeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 2233444455999989999999998877653
No 181
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=73.53 E-value=68 Score=33.06 Aligned_cols=133 Identities=10% Similarity=0.020 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEE-EEEecCCCCCCccCCCCCCCCchHHHH
Q 002191 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEV-VSEIRRSDLEPYLGIHFPANDIPQAAR 291 (955)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~v-iaE~~~~~~~s~lg~~~p~~dip~~~r 291 (955)
...+...+.++.. +.+.+++. ..+..+.+.+|||++..+-..+...+.. -.+ .+ -.+..|+...
T Consensus 21 ~~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~-------~~-----i~~~yp~~W~ 85 (265)
T 3qp6_A 21 QWTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQRME-------KV-----LNVSYPSDWL 85 (265)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEEEEE-------EE-----EESSCCHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCccccccc-------ce-----eecCCcHHHH
Confidence 3456678889988 56888888 6677888899999998865544332211 000 11 1345678899
Q ss_pred HHHHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhh---HHHHhhcCceeEEEEEE-EEcCCCCCceeEEE
Q 002191 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCH---LQYMTNMGSIASLVMAV-IINSKDSMKLWGLV 367 (955)
Q Consensus 292 ~ly~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h---~~yl~n~gv~asl~v~i-~~~~~~~~~LWGll 367 (955)
+.|..+....+ . |++.......|+.-+....+..++.. .+..+.+|++.-+++|+ .-.+ ...|++
T Consensus 86 ~~Y~~~~y~~~-----D--Pvv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~~----g~~g~l 154 (265)
T 3qp6_A 86 NQYSQENFAQH-----D--PIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRN----NVGSIL 154 (265)
T ss_dssp HHHHHTTGGGT-----C--GGGGCCTTSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSSS----SEEEEE
T ss_pred HHHHHCcCccc-----C--hHHHHhcCCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcCC----CCEEEE
Confidence 99998664322 1 22221113334333322112223333 44568999999999999 6554 788888
Q ss_pred Eeec
Q 002191 368 VCHH 371 (955)
Q Consensus 368 ~~hh 371 (955)
+...
T Consensus 155 s~~~ 158 (265)
T 3qp6_A 155 SIGG 158 (265)
T ss_dssp EEES
T ss_pred Eeec
Confidence 8776
No 182
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=70.74 E-value=74 Score=31.89 Aligned_cols=58 Identities=9% Similarity=0.008 Sum_probs=38.7
Q ss_pred EEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCC-CCeeeecCCCcEeeecH
Q 002191 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI-PPIFASDENACCSEWNA 779 (955)
Q Consensus 708 ~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~i-d~I~~~D~~g~i~~~N~ 779 (955)
.|+..-..|+++.+|++.|++++..++.. +..++......- .-++++|.+|.++.-.+
T Consensus 125 ~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~--------------l~~~~~~~~~~~~g~~~l~d~~G~ii~~~p 183 (254)
T 3lif_A 125 VWVFVVSRRLETTDGKFFGVVVATIESEY--------------FSTFYKTFDLGPGGSISLLHSDGRLLIQWP 183 (254)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEECHHH--------------HHHHHTTSCCCTTCEEEEEETTSBEEEEET
T ss_pred cEEEEEEeeeeCCCCCEeEEEEEEECHHH--------------HHHHHHhcCcCCCcEEEEEeCCCcEEEECC
Confidence 35667788999989999999988766532 222333332111 13788999999988644
No 183
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=68.45 E-value=35 Score=36.17 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=65.3
Q ss_pred HHHHHHHHhc-CccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEE
Q 002191 618 CEMVRLIETA-TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (955)
Q Consensus 618 ~~l~~lie~~-~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~ 696 (955)
..+..+.+.. -..+++.|.+|+++..+.. -.+....|.++ .+++.+ .++++++.. ..+.+
T Consensus 102 ~~L~~~~~~~~~~~i~v~d~~G~viass~~------~~p~~~~g~d~-------~~R~yf----~~Al~g~~~--~~~~~ 162 (305)
T 3e4o_A 102 RKLEALATSAEAAVIYLIDRSGVAVAASNW------QEPTSFVGNDY-------AFRDYF----RLAVRDGMA--EHFAM 162 (305)
T ss_dssp HHHHHHHHHSSCSEEEEEETTSBEEEETTT------TSTTCCTTCBC-------TTSHHH----HHHHHHSEE--EEEEE
T ss_pred HHHHHHHhccCccEEEEECCCCCEEEeCCC------cCcccccCCCc-------cccHHH----HHHHhcCCc--EEEEE
Confidence 3444443333 3468999999999876531 01111223322 233333 334443322 11222
Q ss_pred EeeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeecCCCcEee
Q 002191 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776 (955)
Q Consensus 697 ~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~id~I~~~D~~g~i~~ 776 (955)
-...|. ++..-+.|+++ +|+++|++++..|+....+. + . .... .++++|.+|.++.
T Consensus 163 ----~~~tg~--~~i~~a~PV~~-~G~viGVv~v~i~l~~l~~~---~-------~----~~~g---~~~l~D~~G~ii~ 218 (305)
T 3e4o_A 163 ----GTVSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDGVEAD---W-------Q----ASGK---PAYVTDRRGIVLI 218 (305)
T ss_dssp ----CTTTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHHHHHH---H-------H----HHTS---CEEEECTTCBEEE
T ss_pred ----ecCCCC--EEEEEEEEEcc-CCeEEEEEEEEEcHHHHHHH---H-------h----cCCc---eEEEEcCCCeEEE
Confidence 223344 34556788886 59999999998888753321 1 1 1222 3899999999986
Q ss_pred ecH
Q 002191 777 WNA 779 (955)
Q Consensus 777 ~N~ 779 (955)
-+.
T Consensus 219 ~~~ 221 (305)
T 3e4o_A 219 TSL 221 (305)
T ss_dssp ESS
T ss_pred eCC
Confidence 654
No 184
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=66.70 E-value=13 Score=36.73 Aligned_cols=93 Identities=9% Similarity=-0.068 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCCCCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCC
Q 002191 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQ 828 (955)
Q Consensus 749 ~~lr~i~e~~~~~id~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~ 828 (955)
..++.+.+..+.+ ..+++.|.+|+++..+.. ...+.. ..+++.+. +++..+
T Consensus 58 ~~L~~~~~~~~~~-~~i~i~d~~G~~~~~~~~----------~~~~~~--------------~~~r~~f~----~a~~~~ 108 (217)
T 4dah_A 58 SILEKTFDSEPRF-SGLYFLNAKGDVTASTTE----------LKTKVN--------------LADRSFFI----KAKETK 108 (217)
T ss_dssp HHHHHHHTTCTTE-EEEEEEETTCBEEEESSC----------CSSCCB--------------CTTSHHHH----HHHHHC
T ss_pred HHHHHHHhcCCcc-cEEEEECCCCcEEEecCC----------CCCCCC--------------cchhHHHH----HHHhcC
Confidence 3445555544432 468899999998876531 001111 11112222 233322
Q ss_pred CcceeeEEEEcCCCcEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 829 GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
...-.+...-..+|+ ++...+.|+++.+|+++|++++.-++.
T Consensus 109 ~~~is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~ 150 (217)
T 4dah_A 109 KTVISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQID 150 (217)
T ss_dssp SCEECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred CcEEeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHH
Confidence 232222222234565 666778899998999999999766644
No 185
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.07 E-value=86 Score=32.09 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=77.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHH
Q 002191 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFK 295 (955)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 295 (955)
..++..+|-. +.|+++++++..+.+++.++.|.|-+.=|++.+... +..-+.+.-......++.
T Consensus 105 ~~~l~l~LL~--a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~--------------~~~~~~~~~~~~~~~~l~ 168 (252)
T 3e98_A 105 TRRLVLDLLD--ATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV--------------GRSVSSAEAHQAIGGLLS 168 (252)
T ss_dssp HHHHHHHHHH--CCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS--------------SEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc--------------hhhccchhHHHHHHHHhC
Confidence 3444555555 679999999999999999999999999998765210 000000000111111111
Q ss_pred hCCEEEeecCCCCCcccccccccCCccccccccccCCChhh-HHHH---hhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002191 296 QNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCH-LQYM---TNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (955)
Q Consensus 296 ~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h-~~yl---~n~gv~asl~v~i~~~~~~~~~LWGll~~hh 371 (955)
.++ |.+ -.....- ...+ ..-.|+|.-.+|+- .+ .++|+|+.-.
T Consensus 169 ~~~----------------------py~------G~l~~~e~~~lFg~~~a~~v~S~AllpL~-~~----~~~GlLalGS 215 (252)
T 3e98_A 169 GGK----------------------TVC------GVLRPHELAFLFGESDRDEIGSAAVVSLS-FQ----GLHGVLAIGS 215 (252)
T ss_dssp TCC----------------------CST------TCCCHHHHHHHCCCTTGGGCCEEEEEEEE-SS----SEEEEEEEEE
T ss_pred CCC----------------------ceE------CCCCchHHHHhcCCCccccccceEEEEcC-CC----CceEEEEEcC
Confidence 000 000 0011111 1122 11247888888883 34 6999999998
Q ss_pred CCCCCCChhH-HHHHHHHHHHHHHHHH
Q 002191 372 TSPRYIPFPL-RYACEFLVQAFSLQLY 397 (955)
Q Consensus 372 ~~pr~~~~~~-r~~~~~l~~~~~~~l~ 397 (955)
..|.++.+.. -.++++|+.+++..|.
T Consensus 216 ~D~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 216 PDPQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp SSTTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred CChhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 8876655544 6788888888877664
No 186
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=65.38 E-value=74 Score=33.45 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeecCCCC--eEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCEEEeecCCCC
Q 002191 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH--GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAI 308 (955)
Q Consensus 231 ~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~--G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~ 308 (955)
+..+.+...+-+.+.-++.+.-||+.+.+.+ -+.+| -+|--+|-+-=-+=.|.....+....|.+....
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A---------~iG~~~~l~~~DpLVr~alet~~l~~v~~~~~~ 94 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLA---------TLGEMPALDADDLLVRTCLERGELVSVRQELLE 94 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSE---------EESSCCCCCSCCHHHHHHHHHTSCEECCC----
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceee---------ecCCCCCCCCCCHHHHHHHHhCCceeechhhhh
Confidence 5777888888999999999999999876642 22222 123222211112334444445555555442111
Q ss_pred CcccccccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEE-EcCCCCCceeEEEEeecCCCCCCChhHHHHHHH
Q 002191 309 PVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387 (955)
Q Consensus 309 ~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~gv~asl~v~i~-~~~~~~~~LWGll~~hh~~pr~~~~~~r~~~~~ 387 (955)
. .+ . +=+.+.-+++|++ .+| ++||+|+.+..-+..+..+.-..+..
T Consensus 95 ~---------------------------~~-~-~~~sryL~viPLld~~g----~i~Gvl~V~~mpF~a~~~~~LqlL~V 141 (298)
T 4eu0_A 95 R---------------------------GE-Q-RAHSAAAVCVPLVDTDG----RILALLAVEQMPFFVFNERTFSLLAI 141 (298)
T ss_dssp --------------------------------------CCEEEEEECTTS----CEEEEEEEEECCGGGCSHHHHHHHHH
T ss_pred c---------------------------cc-c-ccccceEEEEEeecCCC----cEEEEEEEecCCccccCHhHHHHHHH
Confidence 0 00 0 1145777899998 666 99999999999888888887777777
Q ss_pred HHHHHHHHHH
Q 002191 388 LVQAFSLQLY 397 (955)
Q Consensus 388 l~~~~~~~l~ 397 (955)
|+...+..+.
T Consensus 142 L~g~~ad~i~ 151 (298)
T 4eu0_A 142 LAGHIADLLQ 151 (298)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 187
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=64.69 E-value=14 Score=36.42 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhHhHhHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Q 002191 893 IKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMT 942 (955)
Q Consensus 893 ~~fla~iSHELRnPL~~I~g~~~LL~~~~l~~~~~~~l~~i~~~a~rl~~ 942 (955)
.+.+...+||+.|=|..|.|+++|=+- ++..+|+..+....+....
T Consensus 22 ~~~LR~qrHdf~NkLqvI~GLlql~~y----dea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 22 IHLLGHSRHDWMNKLQLIKGNLSLQKY----DRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHH
Confidence 355778899999999999999987554 6678888887776665554
No 188
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=64.21 E-value=21 Score=32.97 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=43.3
Q ss_pred CeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCCc
Q 002191 764 PIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQ 843 (955)
Q Consensus 764 ~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG~ 843 (955)
-|+++|.+|..++... .+.+|+++.. + .+..++.|+ .+.. .. .|.
T Consensus 58 ~i~v~d~~G~~~~~~~----------~~~iG~~~~~-----------~--------~~~~al~G~-~~~~---~~--~~~ 102 (142)
T 3by8_A 58 FIVVTDMQSLRYSHPE----------AQRIGQPFKG-----------D--------DILKALNGE-ENVA---IN--RGF 102 (142)
T ss_dssp EEEEEETTCBBSCCSS----------GGGTTSBCCC-----------G--------GGTGGGGTC-CEEE---EE--CSS
T ss_pred EEEEECCCCcEEECCC----------hHHCCCcCCC-----------C--------CHHHHhCCC-eEEE---Ee--cCc
Confidence 5889999997765432 3356665331 0 123445555 2211 11 222
Q ss_pred EEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 844 FVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 844 ~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
.........|+++.+|+++|++++..++.
T Consensus 103 ~g~~~~~~~PV~~~~g~viGvv~vg~~~~ 131 (142)
T 3by8_A 103 LAQALRVFTPIYDENHKQIGVVAIGLELS 131 (142)
T ss_dssp SSCEEEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred cEEEEEEEEeEEcCCCCEEEEEEEeEEHH
Confidence 22333344599988899999999888765
No 189
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=62.09 E-value=1.1e+02 Score=29.22 Aligned_cols=147 Identities=10% Similarity=-0.017 Sum_probs=86.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCe--EEEEEecCCCCCCccCCCCCCCCchHHHHHH
Q 002191 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHG--EVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (955)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G--~viaE~~~~~~~s~lg~~~p~~dip~~~r~l 293 (955)
+...+.+++. +.+.+++.+. +..+.+.+|||++++..-.....+ +.+.. ++ .+..|+...+.
T Consensus 19 l~~~~~~l~~--a~s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~~--------~~-----~~nyP~~W~~~ 82 (182)
T 3qp1_A 19 LLEWIHMAGH--IETENELKAF-LDQVLSQAPSERLLLALGRLNNQNQIQRLER--------VL-----NVSYPSDWLDQ 82 (182)
T ss_dssp HHHHHHHHTT--CCSHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSCEEEEEE--------EE-----ESSSCHHHHHH
T ss_pred HHHHHHHHHh--cCCHHHHHHH-HHHHHHhcCCCeEEEEeecCCCcccccchhh--------hh-----hcCCCHHHHHH
Confidence 4567888888 5588877765 677888999999987654332222 22100 01 23457889999
Q ss_pred HHhCCEEEeecCCCCCcccccccccCCccccccccccCCChhhH---HHHhhcCceeEEEEEEEEcCCCCCceeEEEEee
Q 002191 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL---QYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH 370 (955)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~---~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~h 370 (955)
|..+..-.|+ |++.......|+.=+....+..++-.. +..+.+|++.=+++||.-. .+...|+++.-
T Consensus 83 Y~~~~y~~~D-------Pvv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~---~~g~~g~ls~a 152 (182)
T 3qp1_A 83 YMKENYAQHD-------PILRIHLGQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASE---RNNIGSILSIA 152 (182)
T ss_dssp HHHTTGGGTC-------GGGGSCTTSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEET---TTTEEEEEEEE
T ss_pred HHHCCCcccC-------cchHhhcCCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecC---CCCcEEEEEEe
Confidence 9988764331 233211133343333222233344344 4567899999999999755 13789998886
Q ss_pred cCCCCCCChhHHHHHHHHH
Q 002191 371 HTSPRYIPFPLRYACEFLV 389 (955)
Q Consensus 371 h~~pr~~~~~~r~~~~~l~ 389 (955)
...+ ..++.++..++.++
T Consensus 153 ~~~~-~~~~~~~~~l~~la 170 (182)
T 3qp1_A 153 GREP-GRNAALVAMLNCLT 170 (182)
T ss_dssp SSTG-GGCHHHHHHHHHHH
T ss_pred cCCc-cCCHHHHHHHHHHH
Confidence 5543 24445444444333
No 190
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=59.18 E-value=29 Score=31.37 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=44.1
Q ss_pred ccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeeccCCcEE
Q 002191 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (955)
Q Consensus 629 ~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~dG~~~ 708 (955)
+.++++|.+|..+.... .+.+|+++. . .+ .+..++.++... . .. ...++
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~-~---~~-------~~~~al~G~~~~--~--~~----~g~~g-- 99 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSME-G---GD-------SDEALINAKSYV--S--VR----KGSLG-- 99 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCC-S---SC-------CHHHHHHCCCEE--E--EE----EETTE--
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCccc-C---CC-------cHHHHhCCCeEE--E--EE----Eccce--
Confidence 47888999998776542 233576543 1 11 123344554311 1 11 11122
Q ss_pred EEEEEEEEeecCCCCEEEEEEEEecchH
Q 002191 709 YILVNACTSRDYKNNVKGVCFVGQDITH 736 (955)
Q Consensus 709 ~v~v~~~pi~d~~g~v~gvv~v~~DITe 736 (955)
.......|+++.+|+++|++.+..++..
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 2333445999888999999999877653
No 191
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=56.64 E-value=96 Score=26.68 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcC
Q 002191 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660 (955)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG 660 (955)
..+.+..++|+++++-+.+..|+|.|.++.+||-.+..-+-|
T Consensus 21 ~iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~~~sg 62 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQPLSG 62 (127)
T ss_dssp HHHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCCGGGC
T ss_pred hHHhhhcCCCccEEEecccceEEEecchHHHHhhcccCcccC
Confidence 356788999999999999999999999999997655443433
No 192
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=51.15 E-value=6.5 Score=44.98 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeec
Q 002191 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257 (955)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~v~~vr~~~g~DRV~iy~f~ 257 (955)
...++.++.+ +.|+.+++.+.+.++++++++|+|.||.++
T Consensus 322 ~~~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 322 RLALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 3455666776 568999999999999999999999999986
No 193
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=44.35 E-value=2.5e+02 Score=27.87 Aligned_cols=119 Identities=9% Similarity=0.033 Sum_probs=65.6
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCE
Q 002191 221 SRLQALPGGD-IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (955)
Q Consensus 221 ~~l~~~~~~~-~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 299 (955)
.++.. +.+ .+++.+.. +.+.+.+|||++.++.+.. . .+ ++ .+..|....+.|..+..
T Consensus 11 ~~l~~--a~~~~~~l~~~l-~~~~~~~gf~~~~y~~~~~--~-~~-----------~~-----~~~~p~~w~~~Y~~~~y 68 (236)
T 2q0o_A 11 IDMLE--AAQDGHMIKIAL-RSFAHSCGYDRFAYLQKDG--T-QV-----------RT-----FHSYPGPWESIYLGSDY 68 (236)
T ss_dssp HHHHH--HCCSHHHHHHHH-HHHHHHHTCCEEEEEEEET--T-EE-----------EE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHHH-HHHHHHhCCCeEEEEecCC--C-ce-----------EE-----EeCCCHHHHHHHHHCCC
Confidence 55555 336 77777764 5666669999999875211 0 11 11 23446777788887654
Q ss_pred EEeecCCCCCcccccc-cccCCccccccccccC-CCh---hhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC
Q 002191 300 RMICDCHAIPVMVIQS-KELKQPLCLVNSTLRS-PHG---CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (955)
Q Consensus 300 r~i~d~~~~~~~l~~~-~~~~~~ldl~~s~lRs-~s~---~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~ 372 (955)
..+ . |++.. -....|..-+....+. .++ ...++.+.+|+..-+++|+.-.+ ..+|+++....
T Consensus 69 ~~~-----D--Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~----~~~g~ls~~~~ 135 (236)
T 2q0o_A 69 FNI-----D--PVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSY----GSAMMLTFASP 135 (236)
T ss_dssp GGT-----C--HHHHHHHHCCSCEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGG----GCEEEEEEEES
T ss_pred ccc-----C--HHHHHHhCCCCCEEecCcccccccCHHHHHHHHHHHHcCCCceEEEEEEcCC----CCeEEEEEecC
Confidence 221 1 22210 0111222222111111 112 23456679999999999998665 78898876544
No 194
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=39.64 E-value=34 Score=31.46 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.1
Q ss_pred EEEEeecCCCCEEEEEEEEecchHh
Q 002191 713 NACTSRDYKNNVKGVCFVGQDITHE 737 (955)
Q Consensus 713 ~~~pi~d~~g~v~gvv~v~~DITer 737 (955)
...|+++.+|+++|++.+..++...
T Consensus 109 ~~~PV~~~~g~viGvv~vg~~~~~~ 133 (142)
T 3by8_A 109 VFTPIYDENHKQIGVVAIGLELSRV 133 (142)
T ss_dssp EEEEEECTTSCEEEEEEEEEEHHHH
T ss_pred EEEeEEcCCCCEEEEEEEeEEHHHH
Confidence 3449998889999999998877653
No 195
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=37.55 E-value=1.2e+02 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCcEEEEEEEEeeeeCCCCCEEEEEEEEecc
Q 002191 841 QGQFVEVALTASRRTDAEGKVIGCFCFMQIL 871 (955)
Q Consensus 841 dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DI 871 (955)
.|+ |+...+.|+++.+|++.|++++.-++
T Consensus 123 ~g~--~~i~~~~pi~~~~g~~~Gvl~~~i~l 151 (254)
T 3lif_A 123 SGV--WVFVVSRRLETTDGKFFGVVVATIES 151 (254)
T ss_dssp TCC--EEEEEEEEEECTTCCEEEEEEEEECH
T ss_pred CCc--EEEEEEeeeeCCCCCEeEEEEEEECH
Confidence 454 56677889999999999999876664
No 196
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.08 E-value=2.8e+02 Score=28.01 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=33.8
Q ss_pred eeeec-CCCcEeeecHHHHHHhCCChhhh----ccCCccchhcccchhccChhhHH
Q 002191 765 IFASD-ENACCSEWNAAMEKVTGWMRHEV----IGKMLPREIFGNFCRMKGQDMLT 815 (955)
Q Consensus 765 I~~~D-~~g~i~~~N~a~~~l~G~~~eev----iGk~~~~~~~~~~~~l~~~d~~~ 815 (955)
++++| ..+++.+++..+..++||+.+++ +.....+.++. ..+|+|..
T Consensus 46 ~~l~D~~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~----~i~p~D~~ 97 (258)
T 3clo_A 46 AVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYR----RIHPEDLV 97 (258)
T ss_dssp EEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHT----TBCHHHHH
T ss_pred EEEEEcCCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHH----hCChHHHH
Confidence 78888 78899999999999999999987 43322222332 34677655
No 197
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=35.56 E-value=22 Score=38.08 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=38.4
Q ss_pred cEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHH
Q 002191 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677 (955)
Q Consensus 630 ~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~ 677 (955)
.++++|.+++|+.++..+.+++|.++++++|+++. +++.++....+.
T Consensus 31 ~Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~-~ll~~~~~~~l~ 77 (327)
T 4e04_A 31 LLLALAADMTIVAGSDNLPELTGLAIGALIGRSAA-DVFDSETHNRLT 77 (327)
T ss_dssp EEEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHH-HHBCHHHHHHHH
T ss_pred EEEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHH-HHcCHHHHHHHH
Confidence 35677888899999999999999999999999998 777665544433
No 198
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=33.07 E-value=3.5e+02 Score=26.66 Aligned_cols=119 Identities=8% Similarity=0.096 Sum_probs=67.0
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCE
Q 002191 221 SRLQALPGGD-IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (955)
Q Consensus 221 ~~l~~~~~~~-~~~~~~~~v~~vr~~~g~DRV~iy~f~~d~~G~viaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~ 299 (955)
.++.. +.+ .+++.+ .+..+.+.+|||++.++.+.. ... ++ .+..|....+.|..+..
T Consensus 9 ~~l~~--a~~~~~~l~~-~l~~~~~~~gf~~~~y~~~~~--~~~------------~~-----~~~~p~~w~~~Y~~~~y 66 (234)
T 1l3l_A 9 TDLAA--IEGDECILKT-GLADIADHFGFTGYAYLHIQH--RHI------------TA-----VTNYHRQWQSTYFDKKF 66 (234)
T ss_dssp HHHTT--CCSCHHHHHH-HHHHHHHHTTCSEEEEEEEET--TEE------------EE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHH-HHHHHHHHcCCCeEEEEecCC--CCe------------EE-----EcCCCHHHHHHHHHCCC
Confidence 66666 446 777766 455677899999999884211 111 11 23456788888887653
Q ss_pred EEeecCCCCCcccccc-cccCCccccccccccC-CC---hhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecC
Q 002191 300 RMICDCHAIPVMVIQS-KELKQPLCLVNSTLRS-PH---GCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (955)
Q Consensus 300 r~i~d~~~~~~~l~~~-~~~~~~ldl~~s~lRs-~s---~~h~~yl~n~gv~asl~v~i~~~~~~~~~LWGll~~hh~ 372 (955)
..+ . |++.. -....|+.-+...... .+ +...++.+.+|+..-+++|+.-.+ ..+|+++.-..
T Consensus 67 ~~~-----D--Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~----~~~g~ls~~~~ 133 (234)
T 1l3l_A 67 EAL-----D--PVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTAN----GFMSMFTMASD 133 (234)
T ss_dssp GGT-----C--HHHHHHHHCCSCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGG----GCEEEEEEEES
T ss_pred ccc-----C--cHHHHhhCCCCCeeeCccccccccchHHHHHHHHHHHcCCCccEEEEEecCC----CCEEEEEEecC
Confidence 221 1 22210 1111222222211111 11 223445679999999999998665 78898876543
No 199
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=32.18 E-value=1.5e+02 Score=31.16 Aligned_cols=81 Identities=10% Similarity=0.037 Sum_probs=45.4
Q ss_pred CCeeeecCCCcEeeecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhhhcCCCcceeeEEEEcCCC
Q 002191 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQG 842 (955)
Q Consensus 763 d~I~~~D~~g~i~~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~g~~~~~~e~~~~~~dG 842 (955)
..|++.|.+|+++..+.. -.+..++|.+.. ++ ..+.+++.++... .+.+-...|
T Consensus 114 ~~i~v~d~~G~viass~~------~~p~~~~g~d~~--------------~R----~yf~~Al~g~~~~--~~~~~~~tg 167 (305)
T 3e4o_A 114 AVIYLIDRSGVAVAASNW------QEPTSFVGNDYA--------------FR----DYFRLAVRDGMAE--HFAMGTVSK 167 (305)
T ss_dssp SEEEEEETTSBEEEETTT------TSTTCCTTCBCT--------------TS----HHHHHHHHHSEEE--EEEECTTTC
T ss_pred cEEEEECCCCCEEEeCCC------cCcccccCCCcc--------------cc----HHHHHHHhcCCcE--EEEEecCCC
Confidence 468999999999875531 111122333321 11 1233444443222 122333345
Q ss_pred cEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 843 QFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 843 ~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
+ ++...+.|+++ +|+++|++++..|+.
T Consensus 168 ~--~~i~~a~PV~~-~G~viGVv~v~i~l~ 194 (305)
T 3e4o_A 168 R--PGLYISRRVDG-PGGPLGVIVAKLEFD 194 (305)
T ss_dssp C--EEEEEEEEEEE-TTEEEEEEEEEECCH
T ss_pred C--EEEEEEEEEcc-CCeEEEEEEEEEcHH
Confidence 4 44556788886 599999999877765
No 200
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=28.84 E-value=1.5e+02 Score=30.82 Aligned_cols=137 Identities=12% Similarity=-0.032 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcCc--cEEEEcCCCcEe-eecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCc
Q 002191 613 LSSVACEMVRLIETATA--PIFGVDSSGTIN-GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED 689 (955)
Q Consensus 613 L~~~~~~l~~lie~~~~--~I~~~D~dg~i~-~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 689 (955)
....++.+..+.++.+. .|.++|.+|+.+ .+|......+-.+.. .+....+++.+...+. ...+..
T Consensus 62 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~---------~l~n~~~R~yf~~a~~--~~~~~~ 130 (295)
T 3lid_A 62 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSL---------ILRDKSAREYFKYAQS--LDNEQI 130 (295)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECS---------CCCBCTTSHHHHHHHH--SCTTCC
T ss_pred HHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCcc---------ccccchhhHHHHHHhc--CCCCcE
Confidence 34455567777776554 588899999644 444221000000000 1222334444433321 122222
Q ss_pred ceEEEEEEeeeeccCC----cEEEEEEEEEEeecCCCCEEEEEEEEecchHhHHHHHHHHHHHHHHHHHHHhcCCCCCCe
Q 002191 690 KNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765 (955)
Q Consensus 690 ~~~e~~~~~~~~~~dG----~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ae~~L~~se~~lr~i~e~~~~~id~I 765 (955)
+...+.. ...+| ...++..-+.|+. .+|+++|++++-.|+... .+.+. ..... -..+
T Consensus 131 ~~s~~~~----~~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~~l----------~~~~~---~~~~~-~~~~ 191 (295)
T 3lid_A 131 SAWGIEL----ERDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEYL----------SSLLN---YSPVR-DFHI 191 (295)
T ss_dssp EECCCEE----CEETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHHH----------HHHHS---EETTT-TEEC
T ss_pred EEeCcee----cccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHHHH----------HHHHh---hcccC-CCcE
Confidence 2111111 11223 1245666778887 689999999887776442 11121 11111 1247
Q ss_pred eeecCCCcEeeecH
Q 002191 766 FASDENACCSEWNA 779 (955)
Q Consensus 766 ~~~D~~g~i~~~N~ 779 (955)
+++|.+|.++.-+.
T Consensus 192 ~l~d~~G~~l~~~~ 205 (295)
T 3lid_A 192 ELVKHKGFYIASPD 205 (295)
T ss_dssp EEEETTSBEEECSC
T ss_pred EEEcCCCCEEecCC
Confidence 89999999887543
No 201
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=25.34 E-value=69 Score=29.53 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHH---hCCCeEEEEeec
Q 002191 230 DIGLLCDTVVEDVQKL---TGYDRVMLYNFH 257 (955)
Q Consensus 230 ~~~~~~~~~v~~vr~~---~g~DRV~iy~f~ 257 (955)
|.+.+...+|++|..+ +|++|||+|-|.
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyA 82 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFA 82 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 4466777777777666 599999999986
No 202
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=25.09 E-value=39 Score=36.31 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=37.0
Q ss_pred EEEEcC-CCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHH
Q 002191 631 IFGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677 (955)
Q Consensus 631 I~~~D~-dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~ 677 (955)
++++|. +++|+.++..+.+++|.++++++|+++. +++.+ ....+.
T Consensus 55 LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~-~ll~~-~~~~l~ 100 (343)
T 3s7o_A 55 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLA-ALLPE-QWPALQ 100 (343)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHH-HHSTT-THHHHH
T ss_pred EEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHH-HHHhH-HHHHHH
Confidence 456675 7899999999999999999999999998 77776 555443
No 203
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=24.58 E-value=4.1e+02 Score=26.26 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=56.7
Q ss_pred HHhcCccEEEEcCCCcEeeecHHHHHHhCCCchhhcCCCccccccccccHHHHHHHHHHHHcCCCcceEEEEEEeeeecc
Q 002191 624 IETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703 (955)
Q Consensus 624 ie~~~~~I~~~D~dg~i~~~N~~~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~~~~~~~~~ 703 (955)
.+++|+.-|+.+.+|. .|-++-..+||++..++ ....+++. ....|.+. . ...
T Consensus 58 p~~~pDfRFI~~~~~~--~WdDgNa~FyGi~~~~L------------------~~L~~~v~-~~~~Wh~~-~-----~~s 110 (221)
T 2hje_A 58 PSHTPEFRFLTDHKGI--IWDDGNAHFYGVNDLIL------------------DSLANRVS-FSNNWYYI-N-----VMT 110 (221)
T ss_dssp GGGCCSEEEEECSSSE--EEECSGGGGGTCCHHHH------------------HHHHHHCC-SSSSCEEE-E-----EEE
T ss_pred cCCCCcEEEEEeCCce--EEECCCccccccCHHHH------------------HHHHhhhc-ccCceEEE-E-----ecc
Confidence 5678888888888773 45555567788776554 11222222 22222221 1 245
Q ss_pred CCcEEEEEEEEEEeecC-CCCEEEEEEEEecchHhHHH
Q 002191 704 QHSVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKVL 740 (955)
Q Consensus 704 dG~~~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~a 740 (955)
.++.+++.++..|+.+. .|+++|+..+..-....--.
T Consensus 111 ~~g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnNfsl 148 (221)
T 2hje_A 111 SIGSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNFAL 148 (221)
T ss_dssp TTEEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCHHH
T ss_pred CCCceEEEEEccceecCCCCcEEEEEEEEEEecCcHHH
Confidence 78899999999999875 69999987666555444333
No 204
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=22.53 E-value=69 Score=33.54 Aligned_cols=107 Identities=6% Similarity=-0.024 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeecCCCcEe-eecHHHHHHhCCChhhhccCCccchhcccchhccChhhHHHHHHHHHhh
Q 002191 746 RLQGDYEAIIQSVNPLIPPIFASDENACCS-EWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQG 824 (955)
Q Consensus 746 ~se~~lr~i~e~~~~~id~I~~~D~~g~i~-~~N~a~~~l~G~~~eeviGk~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 824 (955)
..+..|..+.++-+.. ..|.++|.+|+.+ .+|......+-.+..++.. ..+++.|..++.
T Consensus 64 ~l~~~~~~~~~~~~~~-~~i~lid~~G~~i~~~~~~~~~~~~~p~~~l~n----------------~~~R~yf~~a~~-- 124 (295)
T 3lid_A 64 ILENMWSSVARNQKLY-KQIRFLDTSGTEKVRIKYDFKTSIAGPSLILRD----------------KSAREYFKYAQS-- 124 (295)
T ss_dssp HHHHHHHHHHHHHCCE-EEEEEEETTSBEEEEEEEETTTTEEEECSCCCB----------------CTTSHHHHHHHH--
T ss_pred HHHHHHHHHHhcCccc-cEEEEECCCCCEEEEEEccCCceeEcCcccccc----------------chhhHHHHHHhc--
Confidence 3445566676654443 4689999999754 3443311111111111111 122222333221
Q ss_pred hcCCCcceeeEEEEcCCC----cEEEEEEEEeeeeCCCCCEEEEEEEEeccC
Q 002191 825 ITGQGTENFPFGFFNRQG----QFVEVALTASRRTDAEGKVIGCFCFMQILV 872 (955)
Q Consensus 825 ~~g~~~~~~e~~~~~~dG----~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (955)
..++..+...+..-..+| ...++...+.|+. .+|+++|++++--|..
T Consensus 125 ~~~~~~~~s~~~~~~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~ 175 (295)
T 3lid_A 125 LDNEQISAWGIELERDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIE 175 (295)
T ss_dssp SCTTCCEECCCEECEETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHH
T ss_pred CCCCcEEEeCceecccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHH
Confidence 123333333333333334 2356777788997 6899999998777654
No 205
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=20.35 E-value=2.5e+02 Score=26.86 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=23.6
Q ss_pred EEEEcCCC--cEeeecHHHHHHhCCCchhhc
Q 002191 631 IFGVDSSG--TINGWNAKVAELTGLPASEAM 659 (955)
Q Consensus 631 I~~~D~dg--~i~~~N~~~~~l~G~~~eeli 659 (955)
+-+.|..| .+..+++.+.+++|.+.+++.
T Consensus 83 ~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~ 113 (181)
T 1l1o_C 83 VNIADFQENQWVTCFQESAEAILGQNAAYLG 113 (181)
T ss_dssp EEEECSSCEEEEEEEHHHHHHHHSSCHHHHH
T ss_pred EEEEeCCCCEEEEEEhHHHHHHhCCCHHHHH
Confidence 44557777 567889999999999999984
Done!