BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002192
         (955 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R1F|A Chain A, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
           From Escherichia Coli
 pdb|2R1F|B Chain B, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
           From Escherichia Coli
          Length = 270

 Score = 32.7 bits (73), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 696 FIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEW 740
           ++  LR  PY    +SDDKY+T +  +E  + E  + G FWP  W
Sbjct: 53  YLKQLREAPYIKHTLSDDKYATVAQALELENPEWIE-GWFWPDTW 96


>pdb|3GUD|A Chain A, Crystal Structure Of A Novel Intramolecular Chaperon
 pdb|3GUD|B Chain B, Crystal Structure Of A Novel Intramolecular Chaperon
          Length = 129

 Score = 32.0 bits (71), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 696 FIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAE--WL 741
           F +GL G  Y  W  ++D+Y ++  LVEK  +EAG   +  P E  WL
Sbjct: 64  FDYGLVG--YDEWEATEDEYDSEGNLVEK-GREAGNIYSIRPTECQWL 108


>pdb|3GJA|A Chain A, Cytc3
 pdb|3GJA|B Chain B, Cytc3
 pdb|3GJB|A Chain A, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
 pdb|3GJB|B Chain B, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
          Length = 319

 Score = 31.6 bits (70), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 828 SCPHFGSKLADMPWRMGLVLRPAPTIGELRSGSSRLVELNDYIRHLHKKGVL 879
           S PH GSK     +RMG   R  PT  ++  G+  L E  D I +L K G +
Sbjct: 242 SLPHTGSKTD---YRMGFAARYVPTQVQVYPGTENLTEYGDGI-NLEKYGAV 289


>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
           Derived Peptide
          Length = 334

 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 539 LTVLSLLPEIQKAVMAD---EILCKWLEDCANGKIQGCNDLKTQSYARATL 586
           +TVLS+LP +++A+M     E L   L++  + K++   DLK  S+ R+T+
Sbjct: 28  MTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTV 78


>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With
           N-Terminal Pex19p Peptide
          Length = 330

 Score = 30.8 bits (68), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 539 LTVLSLLPEIQKAVMAD---EILCKWLEDCANGKIQGCNDLKTQSYARATL 586
           +TVLS+LP +++A+M     E L   L++  + K++   DLK  S+ R+T+
Sbjct: 24  MTVLSMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTV 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,456,324
Number of Sequences: 62578
Number of extensions: 904907
Number of successful extensions: 2483
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2481
Number of HSP's gapped (non-prelim): 6
length of query: 955
length of database: 14,973,337
effective HSP length: 108
effective length of query: 847
effective length of database: 8,214,913
effective search space: 6958031311
effective search space used: 6958031311
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)