BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002192
(955 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBM9|SRAC1_BOVIN Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=2 SV=1
Length = 654
Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 157/290 (54%), Gaps = 19/290 (6%)
Query: 665 ETEASNVGDSCSSIDESQNSSQSVVPLVDIVFIHGLRGGPYKTWRISDDKYSTKSGLVEK 724
ET D + +SQ + D++FIHGL G +KTWR D+ L EK
Sbjct: 369 ETVPDKYHDGVYVLHPQYRTSQPIK--ADVLFIHGLMGAAFKTWRQQDND----QDLTEK 422
Query: 725 IDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQWSGASLPLQEVSTM-----LLEK 779
+ ++ K+ T WP WL+ D P R+ +++Y ++L+ W A P + S LL K
Sbjct: 423 VSEDETKYTTCWPKSWLARDCPALRIISVEYDTSLSDWR-ARCPTERKSIAFRSNELLRK 481
Query: 780 LVAAGIGSRPVVFVTHSMGGLVVKQMLHKA-KTENIDNFVKNTVGLVFYSCPHFGSKLAD 838
L AAG+G RPVV+V+HSMGGL+VK+ML +A K ++ + NT G++FYS PH GS LA+
Sbjct: 482 LRAAGVGDRPVVWVSHSMGGLLVKKMLLEASKRPEMNTIINNTRGIIFYSVPHHGSHLAE 541
Query: 839 MPWRMGLVLRPAPTIGELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGG 898
+ +L P+ + EL S L L D K +VLSF ET T Y G
Sbjct: 542 YSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLSFVETLPT-----YIG 596
Query: 899 WAFRMEIVPIESAYPGFGDLVVLESTDHINSCKPVNRTDPSYTEILEFLR 948
++ +VP++SA G GDL+ ++ +H+N CKP + Y L+F+R
Sbjct: 597 SMIKLHVVPLDSADLGLGDLIPVD-VNHLNICKPKKKDAFLYQRTLQFIR 645
>sp|Q96JX3|SRAC1_HUMAN Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=1 SV=1
Length = 654
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 19/291 (6%)
Query: 665 ETEASNVGDSCSSIDESQNSSQSVVPLVDIVFIHGLRGGPYKTWRISDDKYSTKSGLVEK 724
ET D + +SQ + D++FIHGL G +KTWR D ++ ++EK
Sbjct: 369 ETVQEKYQDGVYVLHPQYRTSQPIK--ADVLFIHGLMGAAFKTWRQQD----SEQAVIEK 422
Query: 725 IDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQWSGASLPLQEVSTM-----LLEK 779
++ ++ T WP WL+ D P R+ +++Y ++L+ W A P++ S LL K
Sbjct: 423 PMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDWR-ARCPMERKSIAFRSNELLRK 481
Query: 780 LVAAGIGSRPVVFVTHSMGGLVVKQMLHKAKTE-NIDNFVKNTVGLVFYSCPHFGSKLAD 838
L AAG+G RPVV+++HSMGGL+VK+ML +A T+ + + NT G++FYS PH GS+LA+
Sbjct: 482 LRAAGVGDRPVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLAE 541
Query: 839 MPWRMGLVLRPAPTIGELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGG 898
+ +L P+ + EL S L L D K +VL+F ET T Y G
Sbjct: 542 YSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLNFVETLPT-----YIG 596
Query: 899 WAFRMEIVPIESAYPGFGDLVVLESTDHINSCKPVNRTDPSYTEILEFLRK 949
++ +VP+ESA G GDL+ ++ +H+N CKP + Y L+F+R+
Sbjct: 597 SMIKLHVVPVESADLGIGDLIPVD-VNHLNICKPKKKDAFLYQRTLQFIRE 646
>sp|Q3U213|SRAC1_MOUSE Protein SERAC1 OS=Mus musculus GN=Serac1 PE=2 SV=1
Length = 654
Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 150/261 (57%), Gaps = 17/261 (6%)
Query: 693 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFT 752
D++FIHGL G +KTWR ++ ++ L E + ++ T WP WL+ D P R+ +
Sbjct: 395 DVLFIHGLMGAAFKTWR----QHDSQRALTESAVVDEDRYTTCWPKTWLAKDCPSLRIIS 450
Query: 753 LKYKSNLTQWSGASLPLQEVSTM-----LLEKLVAAGIGSRPVVFVTHSMGGLVVKQMLH 807
++Y ++L+ W A P++ S LL KL AAG+G RP+++++HSMGGL+VK+ML
Sbjct: 451 VEYDTSLSDWR-ARCPMERKSIAFRSNELLSKLRAAGVGDRPMIWISHSMGGLLVKKMLL 509
Query: 808 KA-KTENIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPAPTIGELRSGSSRLVEL 866
+A K ++ + NT G++FYS PH GS+LA+ + +L P+ + EL S L L
Sbjct: 510 EASKKPELNALINNTRGIIFYSVPHHGSRLAEYSVNIRYLLFPSLEVKELSKDSPALKTL 569
Query: 867 NDYIRHLHKKGVLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGDLVVLESTDH 926
D K +VL+F ET+ T I G ++ +VP+ESA G GDL+ ++ +H
Sbjct: 570 QDDFLEFAKDKNFQVLNFVETQPTFI-----GSMIKLHVVPVESADLGIGDLIPVD-VNH 623
Query: 927 INSCKPVNRTDPSYTEILEFL 947
+N CKP + Y L+F+
Sbjct: 624 LNICKPKTKDAFLYQRTLQFI 644
>sp|Q5SNQ7|SRAC1_DANRE Protein SERAC1 OS=Danio rerio GN=serac1 PE=2 SV=1
Length = 658
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 149/264 (56%), Gaps = 19/264 (7%)
Query: 693 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFT 752
D++F+HGL G +KTWR D + EK++ + WP WL+AD P R+ +
Sbjct: 397 DVLFVHGLLGAAFKTWRQKDCDVTDD----EKLEGVREDYTECWPKSWLAADCPNLRILS 452
Query: 753 LKYKSNLTQWSGASLPLQEV-------STMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQM 805
++Y ++L+ W+ + P++ S LL KL AG+G RPV++V HSMGGL+VK+M
Sbjct: 453 VEYDTHLSDWN-SKCPVENQRKSLAFRSQELLRKLKDAGVGERPVIWVAHSMGGLLVKKM 511
Query: 806 L-HKAKTENIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPAPTIGELRSGSSRLV 864
L AK ++ + +KNT G++FYS PH G+ +A+ + +L P+ + EL S L
Sbjct: 512 LLDAAKDPDLSSLIKNTKGILFYSVPHHGTFMAEYSVSVRYLLFPSIEVKELCRDSPALR 571
Query: 865 ELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGDLVVLEST 924
+LN+ ++ K +VLSF ET V Y G ++ +VP SA G GDL+ ++
Sbjct: 572 DLNENFLNIAKDREFKVLSFAET-----VPTYIGPMLKILVVPAHSADLGIGDLIQVD-V 625
Query: 925 DHINSCKPVNRTDPSYTEILEFLR 948
DH+N CKP + Y L+F++
Sbjct: 626 DHLNICKPEKKDTFLYKRTLQFIQ 649
>sp|Q95JR3|SRAC1_MACFA Protein SERAC1 OS=Macaca fascicularis GN=SERAC1 PE=2 SV=1
Length = 531
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 693 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFT 752
D++FIHGL G +KTWR D ++ ++EK +E ++ T WP WL+ D P R+ +
Sbjct: 395 DVLFIHGLMGAAFKTWRQQD----SEQAVIEKPMEEEDRYTTCWPKTWLAKDCPALRIIS 450
Query: 753 LKYKSNLTQWSGASLPLQEVSTMLLEKLVAAGIG 786
++Y + L+ W A P++ S + +++GIG
Sbjct: 451 VEYDTTLSDWR-ARCPMERRSLL----SISSGIG 479
>sp|Q1J237|PDXY_DEIGD Pyridoxamine kinase OS=Deinococcus geothermalis (strain DSM 11300)
GN=pdxY PE=3 SV=1
Length = 299
Score = 37.0 bits (84), Expect = 0.69, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 854 GELRSGSSRLVELNDYIRHLHKKGVLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYP 913
G LR G RLV + +R +GV+E L+ V G G W R ++P++
Sbjct: 181 GTLREGGPRLVVVTSLVREDAPQGVIETLA---------VTGEGAWLCRTPLLPLDPPRN 231
Query: 914 GFGDLV 919
G GD +
Sbjct: 232 GTGDAI 237
>sp|Q8N1W1|ARG28_HUMAN Rho guanine nucleotide exchange factor 28 OS=Homo sapiens GN=ARHGEF28
PE=1 SV=3
Length = 1705
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 250 VVMDKGLQLMRDAAKRTTKHKEVQETLAKVLDMISTGDMRLS-LEESQKWSGIL 302
V++++ LQ ++ RT +HK++++ L + DMI+T D++++ E++QKW IL
Sbjct: 1008 VLVERILQYTKE---RTEEHKDLRKALCLIKDMIATVDLKVNEYEKNQKWLEIL 1058
>sp|B4G653|PTC71_DROPE Protein phosphatase PTC7 homolog fig OS=Drosophila persimilis
GN=fig PE=3 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 630 PELPHWKCPD--DKHRDNVQRSKSSVGKTDFNSPSTPETEASNVGDSCSSIDESQNSSQS 687
P PH P +HR R S+ G+T F+S P+ + V D + +++
Sbjct: 46 PRSPHLTSPQCSPEHRPRRFRPPSASGRTAFSSAPRPKADVMGVADGVGGWRDRGIDARA 105
Query: 688 VVPLVDIVFIH 698
++P D F+H
Sbjct: 106 LLPGSDRCFVH 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,067,158
Number of Sequences: 539616
Number of extensions: 14836187
Number of successful extensions: 39645
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 39609
Number of HSP's gapped (non-prelim): 28
length of query: 955
length of database: 191,569,459
effective HSP length: 127
effective length of query: 828
effective length of database: 123,038,227
effective search space: 101875651956
effective search space used: 101875651956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)