Query 002193
Match_columns 955
No_of_seqs 568 out of 2079
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 18:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 7.8E-37 1.7E-41 359.8 3.9 511 442-953 2-582 (590)
2 KOG1032 Uncharacterized conser 100.0 1.1E-32 2.3E-37 325.0 15.3 289 637-953 117-436 (590)
3 cd04016 C2_Tollip C2 domain pr 99.8 2.3E-19 5E-24 172.6 15.9 117 2-125 3-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 4E-19 8.7E-24 172.4 14.6 120 3-124 1-126 (126)
5 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.9E-18 6.2E-23 171.4 16.6 126 3-128 2-134 (150)
6 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.6E-18 5.7E-23 166.9 14.6 121 2-126 1-126 (127)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.3E-18 2E-22 161.6 15.8 120 2-127 1-121 (121)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.8E-18 1.5E-22 163.5 14.1 115 3-121 2-125 (126)
9 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.2E-17 2.5E-22 161.1 15.0 118 3-125 2-121 (121)
10 cd04024 C2A_Synaptotagmin-like 99.8 1.2E-17 2.6E-22 161.9 15.2 124 2-125 2-128 (128)
11 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.3E-17 5.1E-22 161.2 14.8 123 2-126 1-133 (133)
12 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.6E-17 5.6E-22 158.7 13.9 116 3-126 2-120 (121)
13 cd08376 C2B_MCTP_PRT C2 domain 99.7 6E-17 1.3E-21 154.5 15.6 113 3-126 2-115 (116)
14 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.2E-17 1.1E-21 156.7 15.2 119 2-123 1-122 (123)
15 cd08681 C2_fungal_Inn1p-like C 99.7 2.7E-17 5.8E-22 157.5 13.0 115 2-125 2-118 (118)
16 cd08678 C2_C21orf25-like C2 do 99.7 6.9E-17 1.5E-21 156.7 15.3 120 3-128 1-122 (126)
17 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.4E-16 3E-21 152.5 15.9 117 2-125 2-118 (119)
18 cd04017 C2D_Ferlin C2 domain f 99.7 1.3E-16 2.9E-21 156.7 16.2 122 2-128 2-134 (135)
19 cd04046 C2_Calpain C2 domain p 99.7 2.1E-16 4.5E-21 153.4 16.5 120 2-127 4-123 (126)
20 cd08375 C2_Intersectin C2 doma 99.7 1.6E-16 3.4E-21 156.4 15.5 117 2-125 16-135 (136)
21 cd04027 C2B_Munc13 C2 domain s 99.7 1.4E-16 3.1E-21 154.8 14.9 115 2-123 2-127 (127)
22 KOG1030 Predicted Ca2+-depende 99.7 4.3E-17 9.2E-22 160.9 10.8 91 2-92 7-97 (168)
23 cd04010 C2B_RasA3 C2 domain se 99.7 7.9E-17 1.7E-21 160.4 12.7 118 2-123 1-147 (148)
24 cd08400 C2_Ras_p21A1 C2 domain 99.7 4.2E-16 9E-21 151.4 16.6 118 2-127 5-124 (126)
25 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3.4E-16 7.4E-21 150.9 15.6 118 3-124 2-120 (121)
26 cd04036 C2_cPLA2 C2 domain pre 99.7 3.1E-16 6.7E-21 150.5 13.9 113 3-126 2-118 (119)
27 cd08381 C2B_PI3K_class_II C2 d 99.7 2.4E-16 5.2E-21 152.2 12.3 99 2-104 14-121 (122)
28 cd08382 C2_Smurf-like C2 domai 99.7 5E-16 1.1E-20 150.1 14.1 119 2-123 1-122 (123)
29 cd08395 C2C_Munc13 C2 domain t 99.7 3E-16 6.4E-21 150.8 12.2 103 2-108 1-114 (120)
30 cd04015 C2_plant_PLD C2 domain 99.7 1.1E-15 2.5E-20 154.1 16.8 120 2-126 8-158 (158)
31 PF02893 GRAM: GRAM domain; I 99.7 4.6E-17 9.9E-22 141.2 5.6 67 629-695 1-69 (69)
32 cd08677 C2A_Synaptotagmin-13 C 99.7 3E-16 6.5E-21 149.3 11.6 98 1-104 14-118 (118)
33 cd08391 C2A_C2C_Synaptotagmin_ 99.7 7.5E-16 1.6E-20 147.7 14.2 113 2-125 2-121 (121)
34 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.6E-16 1E-20 151.5 12.2 104 2-105 16-128 (128)
35 cd04050 C2B_Synaptotagmin-like 99.7 5.2E-16 1.1E-20 145.7 12.1 101 3-107 2-103 (105)
36 cd08394 C2A_Munc13 C2 domain f 99.7 7.7E-16 1.7E-20 147.9 13.2 100 2-107 3-102 (127)
37 cd04028 C2B_RIM1alpha C2 domai 99.7 7.3E-16 1.6E-20 152.9 13.4 105 2-109 30-141 (146)
38 cd08688 C2_KIAA0528-like C2 do 99.7 7.8E-16 1.7E-20 145.8 12.2 104 3-106 1-109 (110)
39 cd04043 C2_Munc13_fungal C2 do 99.7 2.9E-15 6.2E-20 145.1 16.0 118 2-128 2-123 (126)
40 cd08393 C2A_SLP-1_2 C2 domain 99.6 8.2E-16 1.8E-20 149.1 11.8 101 2-105 16-125 (125)
41 cd04044 C2A_Tricalbin-like C2 99.6 3E-15 6.6E-20 144.1 14.0 119 2-127 3-124 (124)
42 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.4E-15 5.2E-20 145.9 12.8 101 2-105 16-125 (125)
43 cd04014 C2_PKC_epsilon C2 doma 99.6 7.1E-15 1.5E-19 143.8 16.2 115 2-127 5-130 (132)
44 cd08373 C2A_Ferlin C2 domain f 99.6 6.2E-15 1.3E-19 143.2 15.1 116 7-130 2-120 (127)
45 KOG1028 Ca2+-dependent phospho 99.6 3E-15 6.4E-20 172.9 14.9 153 2-165 168-326 (421)
46 cd04011 C2B_Ferlin C2 domain s 99.6 3.4E-15 7.3E-20 141.6 12.4 101 2-106 5-110 (111)
47 cd04018 C2C_Ferlin C2 domain t 99.6 4.2E-15 9E-20 148.5 13.0 107 2-108 1-127 (151)
48 cd04051 C2_SRC2_like C2 domain 99.6 2.6E-15 5.7E-20 145.2 11.2 116 2-121 1-125 (125)
49 cd08685 C2_RGS-like C2 domain 99.6 3E-15 6.5E-20 144.0 11.3 100 1-104 12-119 (119)
50 cd04031 C2A_RIM1alpha C2 domai 99.6 4.1E-15 8.8E-20 143.6 12.4 101 1-105 16-125 (125)
51 cd08385 C2A_Synaptotagmin-1-5- 99.6 7.1E-15 1.5E-19 142.0 13.2 102 1-105 16-123 (124)
52 cd08386 C2A_Synaptotagmin-7 C2 99.6 7.4E-15 1.6E-19 142.0 13.3 103 1-106 16-125 (125)
53 cd08387 C2A_Synaptotagmin-8 C2 99.6 6.1E-15 1.3E-19 142.5 12.6 101 2-105 17-123 (124)
54 cd08388 C2A_Synaptotagmin-4-11 99.6 7.1E-15 1.5E-19 143.2 13.0 104 2-106 17-128 (128)
55 cd04041 C2A_fungal C2 domain f 99.6 4.9E-15 1.1E-19 140.6 10.9 98 2-105 2-107 (111)
56 cd04013 C2_SynGAP_like C2 doma 99.6 2.1E-14 4.6E-19 142.2 15.4 119 2-128 12-141 (146)
57 cd04030 C2C_KIAA1228 C2 domain 99.6 1.3E-14 2.8E-19 140.6 13.2 102 1-105 16-127 (127)
58 cd08680 C2_Kibra C2 domain fou 99.6 7.6E-15 1.6E-19 142.0 11.2 101 2-104 15-124 (124)
59 cd08691 C2_NEDL1-like C2 domai 99.6 2.8E-14 6.1E-19 140.4 15.4 118 2-123 2-136 (137)
60 cd04039 C2_PSD C2 domain prese 99.6 1.3E-14 2.7E-19 137.2 12.4 92 2-93 2-99 (108)
61 cd08389 C2A_Synaptotagmin-14_1 99.6 1.1E-14 2.4E-19 141.0 12.2 102 1-106 16-124 (124)
62 cd08383 C2A_RasGAP C2 domain ( 99.6 2.8E-14 6E-19 136.1 13.9 112 3-125 2-117 (117)
63 smart00568 GRAM domain in gluc 99.6 4.8E-15 1E-19 125.3 6.8 59 636-694 1-60 (61)
64 cd08521 C2A_SLP C2 domain firs 99.6 2.7E-14 5.8E-19 137.5 12.5 101 1-104 14-123 (123)
65 cd04049 C2_putative_Elicitor-r 99.6 3.6E-14 7.9E-19 137.1 12.8 104 2-108 2-110 (124)
66 cd08390 C2A_Synaptotagmin-15-1 99.5 6.7E-14 1.4E-18 134.9 13.4 102 2-106 15-123 (123)
67 cd04009 C2B_Munc13-like C2 dom 99.5 3.3E-14 7E-19 139.4 11.2 94 1-94 16-121 (133)
68 cd08675 C2B_RasGAP C2 domain s 99.5 4.4E-14 9.5E-19 139.3 12.0 102 3-108 1-122 (137)
69 cd00275 C2_PLC_like C2 domain 99.5 1.1E-13 2.5E-18 133.9 14.6 116 1-125 2-127 (128)
70 cd04038 C2_ArfGAP C2 domain pr 99.5 5.6E-14 1.2E-18 139.7 12.4 89 2-91 3-91 (145)
71 cd04045 C2C_Tricalbin-like C2 99.5 7.6E-14 1.7E-18 134.4 12.9 103 2-108 2-105 (120)
72 cd04021 C2_E3_ubiquitin_ligase 99.5 1.4E-13 3.1E-18 133.4 14.7 119 2-123 3-124 (125)
73 cd04040 C2D_Tricalbin-like C2 99.5 1E-13 2.2E-18 132.0 13.1 112 3-121 1-114 (115)
74 cd08690 C2_Freud-1 C2 domain f 99.5 2.1E-13 4.6E-18 136.4 15.0 118 3-127 4-138 (155)
75 cd08676 C2A_Munc13-like C2 dom 99.5 8.1E-14 1.7E-18 139.5 11.6 96 1-104 28-153 (153)
76 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.1E-13 2.3E-18 140.4 12.1 102 2-106 28-138 (162)
77 cd08406 C2B_Synaptotagmin-12 C 99.5 3.5E-14 7.6E-19 139.6 7.9 101 2-107 16-124 (136)
78 KOG0696 Serine/threonine prote 99.5 8.9E-15 1.9E-19 160.2 3.9 102 2-107 181-289 (683)
79 cd08384 C2B_Rabphilin_Doc2 C2 99.5 6.1E-14 1.3E-18 137.2 9.1 103 1-108 13-123 (133)
80 cd08404 C2B_Synaptotagmin-4 C2 99.5 5.7E-14 1.2E-18 138.2 8.7 103 1-108 15-125 (136)
81 cd04032 C2_Perforin C2 domain 99.5 1.3E-13 2.9E-18 133.8 11.0 88 2-90 29-118 (127)
82 cd08407 C2B_Synaptotagmin-13 C 99.5 2.7E-13 5.9E-18 133.5 11.6 87 2-88 16-112 (138)
83 cd04026 C2_PKC_alpha_gamma C2 99.5 2.9E-13 6.4E-18 132.1 11.7 102 2-107 14-122 (131)
84 cd04037 C2E_Ferlin C2 domain f 99.5 4E-13 8.8E-18 130.1 12.3 88 3-90 2-92 (124)
85 PLN03008 Phospholipase D delta 99.5 5.1E-13 1.1E-17 160.2 14.7 107 20-131 75-182 (868)
86 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.9E-13 1.1E-17 131.5 12.2 102 1-107 15-124 (136)
87 cd08405 C2B_Synaptotagmin-7 C2 99.5 5.2E-13 1.1E-17 131.3 12.3 103 1-108 15-125 (136)
88 cd08408 C2B_Synaptotagmin-14_1 99.4 1.6E-13 3.4E-18 135.5 7.9 101 2-106 16-125 (138)
89 cd04052 C2B_Tricalbin-like C2 99.4 6.9E-13 1.5E-17 125.9 12.0 100 18-127 9-110 (111)
90 cd08410 C2B_Synaptotagmin-17 C 99.4 3.1E-13 6.8E-18 132.9 8.5 103 2-108 15-125 (135)
91 cd08692 C2B_Tac2-N C2 domain s 99.4 9.2E-13 2E-17 128.4 11.7 100 2-105 15-122 (135)
92 cd04048 C2A_Copine C2 domain f 99.4 7.1E-13 1.5E-17 127.5 10.7 97 6-105 5-113 (120)
93 cd08403 C2B_Synaptotagmin-3-5- 99.4 1.6E-12 3.5E-17 127.5 12.1 103 1-108 14-124 (134)
94 cd00276 C2B_Synaptotagmin C2 d 99.4 4E-13 8.6E-18 131.2 7.8 102 2-108 15-124 (134)
95 cd08409 C2B_Synaptotagmin-15 C 99.4 7.9E-13 1.7E-17 130.3 8.1 101 2-106 16-124 (137)
96 cd04035 C2A_Rabphilin_Doc2 C2 99.4 4.2E-12 9E-17 122.6 12.1 89 2-91 16-113 (123)
97 cd08686 C2_ABR C2 domain in th 99.3 5.5E-12 1.2E-16 119.9 10.8 80 3-88 1-92 (118)
98 KOG1011 Neurotransmitter relea 99.3 2.5E-12 5.3E-17 145.8 8.9 122 2-130 296-428 (1283)
99 KOG2059 Ras GTPase-activating 99.3 4.6E-12 1E-16 146.6 10.7 123 2-130 6-129 (800)
100 PLN03200 cellulose synthase-in 99.3 4.3E-12 9.4E-17 165.0 11.3 115 2-127 1981-2101(2102)
101 cd04047 C2B_Copine C2 domain s 99.3 1.5E-11 3.2E-16 116.3 10.1 86 4-90 3-99 (110)
102 PF00168 C2: C2 domain; Inter 99.3 1.8E-11 3.9E-16 108.7 9.5 81 3-83 1-85 (85)
103 cd00030 C2 C2 domain. The C2 d 99.1 6.8E-10 1.5E-14 100.2 11.4 100 3-104 1-102 (102)
104 smart00239 C2 Protein kinase C 99.0 1.6E-09 3.4E-14 98.4 11.2 90 2-91 1-94 (101)
105 PLN02223 phosphoinositide phos 99.0 5.2E-09 1.1E-13 121.8 14.8 116 2-125 410-536 (537)
106 cd08374 C2F_Ferlin C2 domain s 98.9 6.5E-09 1.4E-13 101.5 10.9 89 3-91 2-123 (133)
107 KOG1328 Synaptic vesicle prote 98.9 3.5E-10 7.5E-15 130.7 2.1 121 3-129 116-304 (1103)
108 PLN02952 phosphoinositide phos 98.9 2.2E-08 4.7E-13 119.0 15.0 116 2-125 471-598 (599)
109 PLN02270 phospholipase D alpha 98.8 2.8E-08 6.1E-13 120.1 15.0 125 2-131 9-153 (808)
110 PLN02230 phosphoinositide phos 98.8 4.4E-08 9.6E-13 116.3 13.7 116 2-125 470-597 (598)
111 COG5038 Ca2+-dependent lipid-b 98.8 1.9E-08 4.1E-13 123.2 10.2 120 3-128 1042-1163(1227)
112 KOG1028 Ca2+-dependent phospho 98.7 3E-08 6.5E-13 115.1 10.1 87 2-88 299-393 (421)
113 PLN02222 phosphoinositide phos 98.7 1.2E-07 2.6E-12 112.5 14.6 116 2-125 453-580 (581)
114 PLN02228 Phosphoinositide phos 98.7 1.3E-07 2.8E-12 112.0 14.5 120 1-128 431-563 (567)
115 KOG0169 Phosphoinositide-speci 98.7 9.2E-08 2E-12 113.5 11.4 117 2-126 617-744 (746)
116 KOG1013 Synaptic vesicle prote 98.6 8.9E-09 1.9E-13 111.1 0.9 158 2-167 94-263 (362)
117 COG5038 Ca2+-dependent lipid-b 98.6 1.9E-07 4E-12 114.7 11.8 121 3-130 438-561 (1227)
118 KOG1031 Predicted Ca2+-depende 98.6 9E-08 2E-12 108.4 8.3 120 2-125 4-135 (1169)
119 cd08689 C2_fungal_Pkc1p C2 dom 98.6 2.3E-07 4.9E-12 85.9 8.5 84 3-91 1-88 (109)
120 KOG1328 Synaptic vesicle prote 98.6 2.4E-08 5.1E-13 115.9 2.3 89 2-90 948-1048(1103)
121 KOG1264 Phospholipase C [Lipid 98.5 6.2E-07 1.3E-11 105.4 11.2 119 1-128 1065-1191(1267)
122 KOG2059 Ras GTPase-activating 98.5 2.2E-07 4.7E-12 108.6 7.0 137 3-148 133-293 (800)
123 PLN02352 phospholipase D epsil 98.1 2.1E-05 4.5E-10 95.6 13.2 118 2-131 11-135 (758)
124 KOG4347 GTPase-activating prot 98.1 2.7E-06 5.9E-11 99.4 4.9 104 625-751 7-113 (671)
125 KOG1326 Membrane-associated pr 97.9 6.1E-06 1.3E-10 99.9 3.1 87 2-88 614-703 (1105)
126 KOG0905 Phosphoinositide 3-kin 97.7 2.4E-05 5.3E-10 95.7 4.7 102 2-106 1525-1635(1639)
127 cd04019 C2C_MCTP_PRT_plant C2 97.7 4.3E-05 9.4E-10 76.7 5.4 79 519-598 44-133 (150)
128 cd04043 C2_Munc13_fungal C2 do 97.6 8.3E-05 1.8E-09 71.9 5.5 75 519-600 47-124 (126)
129 KOG1011 Neurotransmitter relea 97.5 0.00019 4.1E-09 83.1 6.9 118 2-126 1126-1254(1283)
130 KOG1013 Synaptic vesicle prote 97.5 0.00013 2.9E-09 79.5 5.3 87 2-88 234-328 (362)
131 cd08376 C2B_MCTP_PRT C2 domain 97.5 0.00014 3E-09 69.2 4.8 66 519-585 43-108 (116)
132 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00045 9.8E-09 66.2 4.9 100 3-104 1-143 (143)
133 cd04016 C2_Tollip C2 domain pr 97.2 0.00049 1.1E-08 66.6 5.3 72 519-592 45-117 (121)
134 KOG1326 Membrane-associated pr 97.1 0.00011 2.4E-09 89.5 -0.0 117 3-128 208-334 (1105)
135 cd04036 C2_cPLA2 C2 domain pre 97.1 0.00069 1.5E-08 64.9 5.3 72 519-596 46-117 (119)
136 cd04027 C2B_Munc13 C2 domain s 97.1 0.00074 1.6E-08 65.7 5.1 63 519-584 44-116 (127)
137 cd08391 C2A_C2C_Synaptotagmin_ 97.0 0.0011 2.3E-08 63.4 5.3 61 519-581 50-110 (121)
138 cd04042 C2A_MCTP_PRT C2 domain 96.9 0.0013 2.9E-08 63.1 5.5 63 519-583 44-106 (121)
139 PLN02964 phosphatidylserine de 96.9 0.0015 3.2E-08 79.3 6.4 82 3-91 56-139 (644)
140 cd04050 C2B_Synaptotagmin-like 96.8 0.0012 2.5E-08 62.0 4.2 59 519-581 43-103 (105)
141 cd08400 C2_Ras_p21A1 C2 domain 96.7 0.0023 5E-08 62.1 5.4 62 519-581 44-105 (126)
142 cd04024 C2A_Synaptotagmin-like 96.7 0.0018 3.9E-08 62.5 4.6 63 519-582 46-111 (128)
143 cd04015 C2_plant_PLD C2 domain 96.7 0.0026 5.6E-08 64.4 5.5 73 519-594 81-155 (158)
144 cd08373 C2A_Ferlin C2 domain f 96.7 0.0034 7.4E-08 60.8 6.1 76 519-595 37-114 (127)
145 cd08682 C2_Rab11-FIP_classI C2 96.5 0.0032 6.9E-08 61.0 5.1 64 519-583 42-112 (126)
146 cd04022 C2A_MCTP_PRT_plant C2 96.5 0.0027 5.9E-08 61.6 4.5 76 519-596 43-125 (127)
147 cd04014 C2_PKC_epsilon C2 doma 96.5 0.0035 7.6E-08 61.2 5.2 70 519-597 58-129 (132)
148 cd08381 C2B_PI3K_class_II C2 d 96.5 0.0026 5.7E-08 61.5 4.1 59 519-578 60-121 (122)
149 cd04052 C2B_Tricalbin-like C2 96.5 0.0026 5.5E-08 60.4 3.8 70 518-594 35-106 (111)
150 KOG1327 Copine [Signal transdu 96.4 0.0055 1.2E-07 71.9 7.0 85 6-91 141-236 (529)
151 cd08401 C2A_RasA2_RasA3 C2 dom 96.4 0.0039 8.5E-08 60.2 4.9 60 519-580 45-104 (121)
152 cd08394 C2A_Munc13 C2 domain f 96.4 0.004 8.6E-08 60.6 4.7 68 520-590 42-115 (127)
153 cd08390 C2A_Synaptotagmin-15-1 96.3 0.0045 9.7E-08 59.4 4.4 60 519-579 61-122 (123)
154 cd04040 C2D_Tricalbin-like C2 96.3 0.006 1.3E-07 57.8 5.1 65 519-584 43-107 (115)
155 cd08681 C2_fungal_Inn1p-like C 96.2 0.0045 9.8E-08 59.0 4.2 61 519-581 45-105 (118)
156 KOG2060 Rab3 effector RIM1 and 96.2 0.0037 8E-08 69.6 4.0 105 2-108 270-381 (405)
157 cd04025 C2B_RasA1_RasA4 C2 dom 96.2 0.0066 1.4E-07 58.4 5.3 61 519-580 43-103 (123)
158 cd04013 C2_SynGAP_like C2 doma 96.2 0.0067 1.5E-07 60.6 5.1 64 519-585 50-118 (146)
159 cd04031 C2A_RIM1alpha C2 domai 96.2 0.0072 1.6E-07 58.1 5.3 59 519-579 64-125 (125)
160 cd08378 C2B_MCTP_PRT_plant C2 96.1 0.007 1.5E-07 58.4 4.8 62 519-582 39-105 (121)
161 cd08387 C2A_Synaptotagmin-8 C2 96.1 0.0076 1.6E-07 58.1 5.1 61 519-580 62-124 (124)
162 cd08684 C2A_Tac2-N C2 domain f 96.1 0.0059 1.3E-07 54.8 3.8 85 4-91 2-94 (103)
163 cd08678 C2_C21orf25-like C2 do 96.1 0.0075 1.6E-07 58.4 4.8 62 519-582 42-103 (126)
164 cd08385 C2A_Synaptotagmin-1-5- 96.1 0.006 1.3E-07 58.7 4.1 61 519-580 62-124 (124)
165 cd08395 C2C_Munc13 C2 domain t 96.1 0.0081 1.8E-07 58.0 4.9 61 520-581 50-113 (120)
166 PF14470 bPH_3: Bacterial PH d 96.1 0.064 1.4E-06 49.0 10.7 90 637-749 1-92 (96)
167 cd04011 C2B_Ferlin C2 domain s 96.0 0.0067 1.5E-07 57.3 4.2 61 519-580 43-110 (111)
168 cd04010 C2B_RasA3 C2 domain se 96.0 0.0084 1.8E-07 60.1 5.1 63 519-582 46-124 (148)
169 cd08379 C2D_MCTP_PRT_plant C2 95.9 0.0087 1.9E-07 58.3 4.3 61 519-580 46-111 (126)
170 PF12416 DUF3668: Cep120 prote 95.7 0.14 3E-06 58.1 13.6 123 3-130 2-136 (340)
171 cd04029 C2A_SLP-4_5 C2 domain 95.6 0.012 2.6E-07 57.1 4.0 60 519-579 64-125 (125)
172 cd04028 C2B_RIM1alpha C2 domai 95.5 0.02 4.4E-07 57.2 5.5 65 519-585 78-143 (146)
173 KOG3837 Uncharacterized conser 95.5 0.012 2.5E-07 66.2 4.0 119 3-128 369-505 (523)
174 cd08393 C2A_SLP-1_2 C2 domain 95.5 0.016 3.5E-07 56.1 4.5 60 519-579 64-125 (125)
175 KOG1030 Predicted Ca2+-depende 95.5 0.012 2.7E-07 59.2 3.6 53 520-576 50-102 (168)
176 cd04046 C2_Calpain C2 domain p 95.4 0.027 5.8E-07 54.6 5.8 56 519-579 46-101 (126)
177 cd08389 C2A_Synaptotagmin-14_1 95.4 0.025 5.5E-07 54.7 5.5 60 519-579 61-123 (124)
178 PLN03200 cellulose synthase-in 95.4 0.012 2.5E-07 79.2 3.9 64 519-585 2022-2090(2102)
179 cd04030 C2C_KIAA1228 C2 domain 95.3 0.016 3.6E-07 55.8 3.9 61 519-579 64-127 (127)
180 cd08675 C2B_RasGAP C2 domain s 95.3 0.024 5.2E-07 56.0 5.1 64 519-583 45-123 (137)
181 PF10698 DUF2505: Protein of u 95.3 1.1 2.3E-05 45.5 17.1 147 257-418 4-158 (159)
182 cd08521 C2A_SLP C2 domain firs 95.2 0.019 4.2E-07 55.0 4.1 59 519-578 63-123 (123)
183 cd04017 C2D_Ferlin C2 domain f 95.2 0.028 6.1E-07 55.2 5.2 62 519-581 44-118 (135)
184 cd08386 C2A_Synaptotagmin-7 C2 95.1 0.025 5.4E-07 54.5 4.5 60 519-579 62-124 (125)
185 cd08375 C2_Intersectin C2 doma 95.0 0.026 5.6E-07 55.7 4.3 67 519-586 58-130 (136)
186 cd08690 C2_Freud-1 C2 domain f 95.0 0.04 8.6E-07 55.7 5.6 79 519-600 52-140 (155)
187 KOG1265 Phospholipase C [Lipid 95.0 0.05 1.1E-06 66.2 7.1 127 2-144 704-841 (1189)
188 cd08676 C2A_Munc13-like C2 dom 94.8 0.029 6.3E-07 56.6 4.1 54 519-578 100-153 (153)
189 cd04051 C2_SRC2_like C2 domain 94.6 0.032 7E-07 53.7 3.8 66 519-586 45-120 (125)
190 cd08384 C2B_Rabphilin_Doc2 C2 94.6 0.036 7.8E-07 54.1 4.1 57 519-578 61-119 (133)
191 PF14844 PH_BEACH: PH domain a 94.6 0.041 9E-07 51.7 4.3 54 642-695 1-70 (106)
192 cd04048 C2A_Copine C2 domain f 94.4 0.037 8E-07 53.1 3.6 60 519-578 50-112 (120)
193 cd08377 C2C_MCTP_PRT C2 domain 94.3 0.059 1.3E-06 51.3 4.9 60 519-582 44-103 (119)
194 PF15627 CEP76-C2: CEP76 C2 do 94.2 0.56 1.2E-05 47.2 11.6 125 3-129 11-153 (156)
195 PLN03008 Phospholipase D delta 94.2 0.046 1E-06 67.6 4.6 74 519-595 100-175 (868)
196 cd04018 C2C_Ferlin C2 domain t 94.0 0.066 1.4E-06 53.9 4.7 66 519-585 57-130 (151)
197 cd08392 C2A_SLP-3 C2 domain fi 93.9 0.067 1.5E-06 52.2 4.4 60 519-579 64-128 (128)
198 cd08685 C2_RGS-like C2 domain 93.8 0.049 1.1E-06 52.4 3.2 60 519-578 59-119 (119)
199 cd04038 C2_ArfGAP C2 domain pr 93.6 0.064 1.4E-06 53.6 3.7 45 519-565 44-88 (145)
200 cd04021 C2_E3_ubiquitin_ligase 93.6 0.086 1.9E-06 51.1 4.5 58 519-579 45-107 (125)
201 cd08688 C2_KIAA0528-like C2 do 93.5 0.075 1.6E-06 50.2 3.7 60 519-579 43-108 (110)
202 cd08693 C2_PI3K_class_I_beta_d 93.4 0.4 8.7E-06 49.4 9.2 85 2-88 9-119 (173)
203 cd08405 C2B_Synaptotagmin-7 C2 93.4 0.073 1.6E-06 52.2 3.6 59 519-580 63-123 (136)
204 cd04033 C2_NEDD4_NEDD4L C2 dom 93.0 0.092 2E-06 51.1 3.7 61 519-581 50-116 (133)
205 cd04020 C2B_SLP_1-2-3-4 C2 dom 93.0 0.088 1.9E-06 53.6 3.6 74 520-600 76-152 (162)
206 cd04045 C2C_Tricalbin-like C2 93.0 0.12 2.7E-06 49.7 4.4 61 519-581 45-105 (120)
207 cd00030 C2 C2 domain. The C2 d 92.9 0.12 2.7E-06 45.7 4.2 59 519-578 43-102 (102)
208 cd00276 C2B_Synaptotagmin C2 d 92.9 0.077 1.7E-06 51.5 2.9 59 519-581 62-123 (134)
209 cd08383 C2A_RasGAP C2 domain ( 92.9 0.17 3.7E-06 47.8 5.2 61 519-582 40-102 (117)
210 cd04054 C2A_Rasal1_RasA4 C2 do 92.7 0.14 3E-06 49.3 4.4 61 519-581 44-105 (121)
211 cd08398 C2_PI3K_class_I_alpha 92.7 0.55 1.2E-05 47.7 8.8 84 2-89 9-106 (158)
212 cd08382 C2_Smurf-like C2 domai 92.5 0.16 3.5E-06 49.0 4.5 58 519-578 44-103 (123)
213 cd04037 C2E_Ferlin C2 domain f 92.2 0.17 3.7E-06 48.9 4.4 45 519-564 45-89 (124)
214 cd08680 C2_Kibra C2 domain fou 92.2 0.14 3.1E-06 49.7 3.8 59 519-578 63-124 (124)
215 cd04032 C2_Perforin C2 domain 92.1 0.19 4.2E-06 49.0 4.5 44 520-564 71-115 (127)
216 cd00275 C2_PLC_like C2 domain 92.1 0.18 3.9E-06 48.4 4.4 60 519-584 54-114 (128)
217 cd08388 C2A_Synaptotagmin-4-11 92.1 0.16 3.5E-06 49.4 4.1 60 519-579 63-127 (128)
218 cd04026 C2_PKC_alpha_gamma C2 92.0 0.19 4.2E-06 48.7 4.5 60 519-580 61-121 (131)
219 PF10698 DUF2505: Protein of u 91.7 7.9 0.00017 39.2 15.9 146 795-950 4-157 (159)
220 cd04049 C2_putative_Elicitor-r 91.5 0.18 4E-06 48.4 3.7 66 519-586 45-114 (124)
221 cd08380 C2_PI3K_like C2 domain 91.4 0.8 1.7E-05 46.2 8.3 87 2-89 9-107 (156)
222 cd04041 C2A_fungal C2 domain f 90.0 0.33 7.1E-06 45.9 3.8 46 519-565 48-96 (111)
223 PF10358 NT-C2: N-terminal C2 89.8 9.6 0.00021 37.4 14.3 117 2-128 8-137 (143)
224 cd04035 C2A_Rabphilin_Doc2 C2 89.7 0.38 8.3E-06 46.1 4.1 57 519-577 63-122 (123)
225 cd04039 C2_PSD C2 domain prese 89.6 0.38 8.2E-06 45.5 3.9 46 519-565 48-94 (108)
226 cd08408 C2B_Synaptotagmin-14_1 89.6 0.25 5.4E-06 48.9 2.8 46 519-565 64-111 (138)
227 PF11605 Vps36_ESCRT-II: Vacuo 89.3 1.9 4.1E-05 39.5 8.0 72 637-710 10-87 (89)
228 cd08404 C2B_Synaptotagmin-4 C2 89.3 0.17 3.7E-06 49.6 1.3 59 519-580 63-123 (136)
229 cd08677 C2A_Synaptotagmin-13 C 89.2 0.34 7.3E-06 46.7 3.2 58 520-578 59-118 (118)
230 cd08397 C2_PI3K_class_III C2 d 88.9 1.5 3.2E-05 44.6 7.8 70 20-89 28-107 (159)
231 cd08406 C2B_Synaptotagmin-12 C 88.9 0.43 9.3E-06 47.1 3.8 46 519-565 63-110 (136)
232 KOG1452 Predicted Rho GTPase-a 88.3 0.79 1.7E-05 50.3 5.6 112 3-126 53-167 (442)
233 cd04044 C2A_Tricalbin-like C2 88.3 0.52 1.1E-05 44.9 3.9 45 519-565 48-92 (124)
234 cd04012 C2A_PI3K_class_II C2 d 88.0 1.6 3.4E-05 44.9 7.4 88 2-89 9-119 (171)
235 cd08407 C2B_Synaptotagmin-13 C 87.8 0.56 1.2E-05 46.5 3.9 46 519-565 65-112 (138)
236 cd08410 C2B_Synaptotagmin-17 C 87.8 0.19 4.1E-06 49.4 0.5 58 519-578 62-121 (135)
237 cd08403 C2B_Synaptotagmin-3-5- 87.1 0.52 1.1E-05 46.0 3.1 57 519-578 62-120 (134)
238 cd08402 C2B_Synaptotagmin-1 C2 85.9 0.96 2.1E-05 44.2 4.4 56 520-578 64-121 (136)
239 cd08691 C2_NEDL1-like C2 domai 85.7 1.6 3.4E-05 43.3 5.7 62 519-582 56-123 (137)
240 cd08687 C2_PKN-like C2 domain 84.8 8.7 0.00019 35.3 9.3 83 22-125 9-92 (98)
241 cd04009 C2B_Munc13-like C2 dom 84.0 1.1 2.4E-05 43.8 3.8 45 520-565 67-115 (133)
242 smart00239 C2 Protein kinase C 83.1 1.3 2.8E-05 39.4 3.6 43 520-563 47-89 (101)
243 cd08399 C2_PI3K_class_I_gamma 80.9 7.9 0.00017 40.1 8.8 69 2-71 11-88 (178)
244 cd01201 Neurobeachin Neurobeac 80.5 7.6 0.00016 36.8 7.6 90 641-751 1-105 (108)
245 cd08409 C2B_Synaptotagmin-15 C 80.2 1 2.3E-05 44.3 2.0 44 519-563 62-107 (137)
246 cd05018 CoxG Carbon monoxide d 80.0 48 0.001 31.7 13.8 136 258-419 7-143 (144)
247 smart00142 PI3K_C2 Phosphoinos 78.8 11 0.00024 35.1 8.3 69 3-71 13-91 (100)
248 PF11696 DUF3292: Protein of u 78.5 9.7 0.00021 46.5 9.6 97 646-751 520-634 (642)
249 PF00792 PI3K_C2: Phosphoinosi 76.9 10 0.00022 37.6 7.9 54 36-89 23-85 (142)
250 cd04047 C2B_Copine C2 domain s 74.7 3.5 7.5E-05 38.6 3.8 45 519-565 49-97 (110)
251 PF15625 CC2D2AN-C2: CC2D2A N- 74.6 59 0.0013 33.3 13.0 84 22-106 37-124 (168)
252 PF00168 C2: C2 domain; Inter 74.5 2.1 4.6E-05 37.1 2.1 41 519-560 45-85 (85)
253 cd05018 CoxG Carbon monoxide d 72.3 92 0.002 29.7 14.2 138 795-952 6-143 (144)
254 cd08876 START_1 Uncharacterize 70.9 1.1E+02 0.0024 31.5 14.4 142 254-412 43-191 (195)
255 PF14429 DOCK-C2: C2 domain in 68.9 13 0.00028 38.5 6.8 55 34-88 60-120 (184)
256 cd08686 C2_ABR C2 domain in th 68.8 6 0.00013 38.2 3.9 45 519-565 42-92 (118)
257 cd08695 C2_Dock-B C2 domains f 68.2 26 0.00057 36.7 8.7 53 34-86 54-111 (189)
258 cd07821 PYR_PYL_RCAR_like Pyra 67.7 1.1E+02 0.0023 28.9 12.7 132 254-413 3-137 (140)
259 cd08870 START_STARD2_7-like Li 66.7 1.3E+02 0.0028 31.8 14.0 150 256-418 54-209 (209)
260 KOG1327 Copine [Signal transdu 66.2 8.7 0.00019 45.9 5.3 79 13-91 2-104 (529)
261 cd08903 START_STARD5-like Lipi 65.0 1.8E+02 0.0038 30.8 14.6 149 256-417 50-207 (208)
262 PLN02223 phosphoinositide phos 64.5 7.2 0.00016 46.9 4.2 97 488-593 432-533 (537)
263 cd07821 PYR_PYL_RCAR_like Pyra 63.9 1.1E+02 0.0024 28.8 12.0 104 795-920 6-112 (140)
264 cd08869 START_RhoGAP C-termina 63.6 49 0.0011 34.7 9.9 135 257-409 49-195 (197)
265 cd08692 C2B_Tac2-N C2 domain s 62.8 11 0.00023 37.4 4.4 61 503-564 43-108 (135)
266 cd08868 START_STARD1_3_like Ch 61.8 1.1E+02 0.0025 32.0 12.5 145 257-416 53-206 (208)
267 cd08694 C2_Dock-A C2 domains f 61.6 28 0.00061 36.6 7.4 53 34-86 54-113 (196)
268 PLN02952 phosphoinositide phos 60.3 10 0.00022 46.4 4.6 59 520-583 525-584 (599)
269 PF06115 DUF956: Domain of unk 58.7 35 0.00077 32.8 6.9 44 649-693 15-58 (118)
270 cd07823 SRPBCC_5 Ligand-bindin 56.0 1.8E+02 0.004 28.3 12.1 62 884-952 81-144 (146)
271 cd08876 START_1 Uncharacterize 55.7 1.9E+02 0.004 29.8 12.7 143 795-951 46-193 (195)
272 KOG4471 Phosphatidylinositol 3 55.5 49 0.0011 40.0 8.8 68 630-699 29-97 (717)
273 PF04707 PRELI: PRELI-like fam 52.7 1.6E+02 0.0035 29.7 11.2 63 879-941 77-140 (157)
274 cd08374 C2F_Ferlin C2 domain s 52.6 16 0.00035 36.0 3.8 30 535-565 91-120 (133)
275 cd08679 C2_DOCK180_related C2 52.3 39 0.00086 34.8 6.8 53 36-88 55-115 (178)
276 PF08567 TFIIH_BTF_p62_N: TFII 52.1 42 0.00091 30.0 6.0 46 648-696 6-53 (79)
277 smart00234 START in StAR and p 52.1 2.9E+02 0.0063 28.5 14.3 78 334-417 120-202 (206)
278 cd00177 START Lipid-binding ST 49.3 1.5E+02 0.0032 29.9 10.6 51 871-923 114-168 (193)
279 smart00683 DM16 Repeats in sea 49.2 27 0.00058 29.1 3.9 34 658-692 20-53 (55)
280 cd08871 START_STARD10-like Lip 48.0 3.3E+02 0.0071 28.9 13.3 78 336-419 122-204 (222)
281 COG4687 Uncharacterized protei 47.7 23 0.00051 33.5 3.7 65 654-738 20-84 (122)
282 cd08906 START_STARD3-like Chol 47.3 3.7E+02 0.0081 28.4 13.7 136 794-940 53-198 (209)
283 cd08904 START_STARD6-like Lipi 45.0 3E+02 0.0064 29.2 12.1 74 869-943 120-198 (204)
284 cd07823 SRPBCC_5 Ligand-bindin 43.9 2.5E+02 0.0054 27.4 10.9 65 342-412 75-141 (146)
285 cd08696 C2_Dock-C C2 domains f 43.7 64 0.0014 33.5 6.7 39 33-71 54-95 (179)
286 cd08868 START_STARD1_3_like Ch 43.3 2.1E+02 0.0046 30.0 10.9 52 872-923 125-181 (208)
287 cd08870 START_STARD2_7-like Li 43.1 4.2E+02 0.0091 27.9 14.2 148 795-949 55-207 (209)
288 cd08905 START_STARD1-like Chol 43.1 3.2E+02 0.0069 28.9 12.2 63 872-935 127-193 (209)
289 cd08697 C2_Dock-D C2 domains f 42.2 80 0.0017 33.0 7.1 39 33-71 56-97 (185)
290 PTZ00447 apical membrane antig 41.3 2.4E+02 0.0051 32.2 10.8 112 3-126 60-173 (508)
291 PF01852 START: START domain; 40.8 2.7E+02 0.0059 28.6 11.2 81 334-420 119-205 (206)
292 KOG1329 Phospholipase D1 [Lipi 40.4 38 0.00083 42.8 5.2 103 22-128 138-242 (887)
293 PF00407 Bet_v_1: Pathogenesis 37.6 2.9E+02 0.0063 27.7 10.3 137 796-953 10-149 (151)
294 cd08877 START_2 Uncharacterize 35.6 4.1E+02 0.009 28.0 11.7 129 794-932 50-199 (215)
295 KOG0694 Serine/threonine prote 35.1 14 0.0003 45.3 0.3 96 21-128 27-123 (694)
296 cd00177 START Lipid-binding ST 35.0 4.7E+02 0.01 26.1 12.9 122 255-389 42-167 (193)
297 cd08904 START_STARD6-like Lipi 33.1 4.9E+02 0.011 27.6 11.5 142 257-414 51-202 (204)
298 PLN02230 phosphoinositide phos 32.6 44 0.00095 41.1 4.0 61 520-585 524-585 (598)
299 cd08689 C2_fungal_Pkc1p C2 dom 31.5 40 0.00087 32.0 2.7 30 518-549 42-71 (109)
300 cd08907 START_STARD8-like C-te 31.0 2.6E+02 0.0057 29.7 8.8 105 282-392 71-183 (205)
301 PF06219 DUF1005: Protein of u 30.3 2.7E+02 0.0059 32.6 9.4 106 22-128 36-169 (460)
302 PF11618 DUF3250: Protein of u 29.2 1.8E+02 0.0039 27.6 6.7 95 25-126 2-105 (107)
303 PF00407 Bet_v_1: Pathogenesis 28.7 4.9E+02 0.011 26.1 10.2 115 256-389 8-123 (151)
304 cd07826 SRPBCC_CalC_Aha1-like_ 28.7 5.5E+02 0.012 24.9 11.9 139 254-416 2-141 (142)
305 PF07234 DUF1426: Protein of u 27.9 27 0.00058 32.2 0.8 36 447-482 9-44 (117)
306 cd07816 Bet_v1-like Ligand-bin 27.4 6.1E+02 0.013 25.0 14.1 116 255-388 4-119 (148)
307 cd08871 START_STARD10-like Lip 27.1 7.6E+02 0.017 26.0 13.1 49 872-922 122-175 (222)
308 KOG0696 Serine/threonine prote 27.1 39 0.00084 39.3 2.1 58 519-578 228-286 (683)
309 cd08906 START_STARD3-like Chol 26.7 7.8E+02 0.017 26.0 12.5 147 256-416 53-207 (209)
310 cd08874 START_STARD9-like C-te 26.2 7.5E+02 0.016 26.2 11.5 122 254-387 47-176 (205)
311 PF04283 CheF-arch: Chemotaxis 25.8 64 0.0014 34.7 3.4 35 656-694 25-59 (221)
312 KOG0169 Phosphoinositide-speci 25.2 72 0.0016 39.7 4.0 63 520-586 670-732 (746)
313 cd08910 START_STARD2-like Lipi 24.6 8.4E+02 0.018 25.7 12.7 141 795-947 54-203 (207)
314 PF03703 bPH_2: Bacterial PH d 23.5 1.6E+02 0.0034 25.3 4.9 35 661-696 6-40 (80)
315 cd08874 START_STARD9-like C-te 23.3 7.3E+02 0.016 26.3 10.8 118 795-920 50-176 (205)
316 PF07162 B9-C2: Ciliary basal 23.2 7.3E+02 0.016 25.2 10.5 78 3-86 4-101 (168)
317 PF11687 DUF3284: Domain of un 23.0 6.5E+02 0.014 24.2 9.5 98 256-384 3-100 (120)
318 PF12068 DUF3548: Domain of un 22.9 76 0.0017 33.9 3.2 36 678-716 111-146 (213)
319 cd08865 SRPBCC_10 Ligand-bindi 22.4 6.3E+02 0.014 23.4 11.3 26 891-919 83-108 (140)
320 PF10604 Polyketide_cyc2: Poly 22.3 6.4E+02 0.014 23.4 10.8 131 795-952 7-138 (139)
321 PF07289 DUF1448: Protein of u 22.3 3E+02 0.0065 31.5 7.8 103 636-759 150-258 (339)
322 PF06017 Myosin_TH1: Myosin ta 22.1 6.5E+02 0.014 26.3 10.1 103 627-754 33-145 (199)
323 PLN02222 phosphoinositide phos 21.8 98 0.0021 38.0 4.3 61 520-585 507-568 (581)
324 cd08910 START_STARD2-like Lipi 21.0 9.8E+02 0.021 25.1 13.0 144 256-418 53-207 (207)
325 cd08905 START_STARD1-like Chol 20.6 1E+03 0.022 25.1 12.1 147 257-416 54-207 (209)
326 PF05106 Phage_holin_3: Phage 20.1 1.9E+02 0.0041 27.1 4.9 40 480-521 61-100 (100)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=7.8e-37 Score=359.85 Aligned_cols=511 Identities=29% Similarity=0.369 Sum_probs=433.6
Q ss_pred CccchhhhhhcccchhhhHHHHHHHHHHHHhhhccCCCcccccccCCCCCCchhhhheeeeeeeehhhHHHHHHHHHHhh
Q 002193 442 PQSDWKLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQAR 521 (955)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (955)
+..+|+....+|....++.....-+++-+|+-.+.+...+|.+|.|+++||..|+++-..+++.+.+|...++.+|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k 81 (590)
T KOG1032|consen 2 PHMQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAK 81 (590)
T ss_pred CcccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccc
Confidence 34568888899999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-------------------------------------------------------------ceeccccCCCCCceeE
Q 002193 522 KQK-------------------------------------------------------------EIFEYDAMDEPPSMLD 540 (955)
Q Consensus 522 ~~~-------------------------------------------------------------e~~~f~~~~~~p~~~~ 540 (955)
... +.++|+++..|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~ 161 (590)
T KOG1032|consen 82 LHKGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKV 161 (590)
T ss_pred cCCCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCcccee
Confidence 544 8999999999999999
Q ss_pred EEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhhccccccceeccCCCCchhhhhhhhhhhhhccce-
Q 002193 541 VEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNVVKEYLTKMEKEVGKK- 619 (955)
Q Consensus 541 v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~~~~~- 619 (955)
|.+||++++++.+..+|++.+|+... -.+++++|++|.|+.||.|+.+++++.+++++.++.+...|+.+++++++++
T Consensus 162 vIpf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~ 240 (590)
T KOG1032|consen 162 VIPFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQ 240 (590)
T ss_pred EEeeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccc
Confidence 99999999999999999999999997 7899999999999999999999999999999999999999999999999988
Q ss_pred -ecccCcccchhhhcccCCCCCCeeEEEEEeeEeeecccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCcc
Q 002193 620 -INLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSL 698 (955)
Q Consensus 620 -~~~~s~~~~~~F~~lF~lp~~E~Li~~f~Cal~r~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~ 698 (955)
-.+.+++.+.+|+..|++|.+|.++++|+|++.+.++++|+++++....|||+++||..+++...|++++.++..+...
T Consensus 241 ~~~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~ 320 (590)
T KOG1032|consen 241 QGNVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPW 320 (590)
T ss_pred ccccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccc
Confidence 3667789999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cCCCCCeEEEEEeeCCCcCcCCCceeeccCCceEEEeccccc-hHHHHHHHHHHHHhCCCChhhhhhcccccc---cccc
Q 002193 699 SSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVS-YNVAHRTIMALWKARSLSPEQKVQIVEESE---AKSL 774 (955)
Q Consensus 699 ~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~k~~F~sF~~-rd~a~~~i~~lw~~~~ls~e~~~~~~~es~---~~~~ 774 (955)
...+.+....++..+.++.+..|.+.+...+++.+.|.++.. .+..-++++..|............++.... ..-.
T Consensus 321 ~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~ 400 (590)
T KOG1032|consen 321 KGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLK 400 (590)
T ss_pred cCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeec
Confidence 655556688888889999999999999888999999988877 344444444444433322222222222110 0000
Q ss_pred ccCCCCCccCCCCccccccccccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEe--eecc
Q 002193 775 QSEEGGTFLGLEDVTMSEVYSSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRF--DKCI 852 (955)
Q Consensus 775 ~~eds~~~~g~~d~~~~~v~~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~--~~~l 852 (955)
...+..-....-+..++++.....++.++.+..+|.+.+-....+++.++..+.-++|+...+++.+|+.+|+- ..++
T Consensus 401 v~~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i 480 (590)
T KOG1032|consen 401 VSTSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPI 480 (590)
T ss_pred ceeEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeecccccccccc
Confidence 00100000112234566666667788888888888877766777788888888888999889999999999996 6778
Q ss_pred cCCccccCceEEEEeccCCCcEEEEEEEeeCCCCCCCceEEEEEEE-EEeCCCCCCccEEEEEEEEEEeecccchhhhhh
Q 002193 853 SRYRGEVTSTQQKSPLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQ-VEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITK 931 (955)
Q Consensus 853 ~p~g~~vt~~Qqk~~~~d~~~~vve~~~~~~dVPyGD~F~V~~R~~-i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek 931 (955)
++....++..|++........|++++++.+||||||++|.||.||. .......+..+.+.++..|.|+|...++-...+
T Consensus 481 ~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k 560 (590)
T KOG1032|consen 481 SPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIK 560 (590)
T ss_pred ccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 8899999999999989888899999999999999999999999994 333334457888888899999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHhhh
Q 002193 932 NIVSNLEDRLRVKLSVIEKEFA 953 (955)
Q Consensus 932 ~t~~~~~~~~k~l~~~~~kei~ 953 (955)
.++.+.++.++.++.++++.-.
T Consensus 561 ~~~r~~~~~l~~~~~~l~~~~~ 582 (590)
T KOG1032|consen 561 QILRNDQDLLEVLFSLLEKLSQ 582 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 2
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.98 E-value=1.1e-32 Score=324.97 Aligned_cols=289 Identities=21% Similarity=0.324 Sum_probs=211.8
Q ss_pred CCCCCeeEEEEEeeEeeecccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCcccCCCCCeEEEEEeeCCCc
Q 002193 637 LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGM 716 (955)
Q Consensus 637 lp~~E~Li~~f~Cal~r~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~~~ 716 (955)
+|++|+|+++|+|||+|.|++|||||+|++|||||||+|||.++.+||+.+|..|+|+.++ |+
T Consensus 117 ~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~ta-----------------g~ 179 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTA-----------------GI 179 (590)
T ss_pred CCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhc-----------------cC
Confidence 9999999999999999999999999999999999999999999999999999999998743 33
Q ss_pred CcCCCceeeccCCceEEEeccccchHHHHHHHHHHHHhCCC---Chhhh----hhccccccccc-----cccCCC--CCc
Q 002193 717 DARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMALWKARSL---SPEQK----VQIVEESEAKS-----LQSEEG--GTF 782 (955)
Q Consensus 717 ~~~~~~~~~~~~~~~k~~F~sF~~rd~a~~~i~~lw~~~~l---s~e~~----~~~~~es~~~~-----~~~eds--~~~ 782 (955)
+++++.+. .+..+|+|+||.+||.+|.+|..+-+.... ++..- .....+...++ ...+++ ...
T Consensus 180 --fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s 256 (590)
T KOG1032|consen 180 --FPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNS 256 (590)
T ss_pred --CCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccc
Confidence 34444444 355799999999999999988655443211 11100 00000000000 000000 001
Q ss_pred cCCC-------------CccccccccccccCChhhheec-ccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEe
Q 002193 783 LGLE-------------DVTMSEVYSSVLPVPMSFFMEL-FGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRF 848 (955)
Q Consensus 783 ~g~~-------------d~~~~~v~~~~~p~s~~~~f~l-F~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~ 848 (955)
.+.+ ...+.-+....|.+++..||++ |++..+...+.+.+...++...+|.....+...|.++|+.
T Consensus 257 ~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~ 336 (590)
T KOG1032|consen 257 FDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTK 336 (590)
T ss_pred cCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCc
Confidence 1110 0112223445678899999976 9988888889999999999999998777788999999996
Q ss_pred eecccCCccccC--ceEEEEeccC-CCcEEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccc
Q 002193 849 DKCISRYRGEVT--STQQKSPLPN-GNGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRH 925 (955)
Q Consensus 849 ~~~l~p~g~~vt--~~Qqk~~~~d-~~~~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~ 925 (955)
+.+. +.|+..| ..++.....+ ..++.+...+.++|||||++|.|++||+|+|.. ++.|+++|+++|.|.|++|.
T Consensus 337 ~l~~-~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~--~~~~~l~v~~~V~~~~~sw~ 413 (590)
T KOG1032|consen 337 GLPA-KSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAG--SNSCKLKVSTSVEWTKSSWD 413 (590)
T ss_pred cCCC-cCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecC--CcceeecceeEEEeccCchh
Confidence 5442 3343333 3333333333 445788899999999999999999999999965 49999999999999999999
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHhhh
Q 002193 926 QKRITKNIVSNLEDRLRVKLSVIEKEFA 953 (955)
Q Consensus 926 K~~Iek~t~~~~~~~~k~l~~~~~kei~ 953 (955)
+.+++.++. .++.+++.+++.+.
T Consensus 414 ~~~~~~~~~-----~~k~lv~~~~~~~~ 436 (590)
T KOG1032|consen 414 VPVSEIGSN-----TLKDLVEILEKLLE 436 (590)
T ss_pred hcccccccc-----chhhHHHHHHHHHh
Confidence 999998886 66777777777664
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=2.3e-19 Score=172.57 Aligned_cols=117 Identities=23% Similarity=0.474 Sum_probs=102.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~-t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
+|+|+|++|++|+..+ .|.+||||++.+++++++|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++||
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 5899999999988777 789999999999999999999876 79999999999999666678999999999999999999
Q ss_pred eeEeeccc-ccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 81 FLKIPVSR-VFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 81 ~v~V~L~~-l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
++.+++.. +.. +...+.||+|.++.++ ...|+|+|+++|
T Consensus 82 ~~~i~l~~~~~~---g~~~~~W~~L~~~~~~---~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFN---GETLDDWYSLSGKQGE---DKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccC---CCCccccEeCcCccCC---CCceEEEEEEeC
Confidence 99999964 543 2336899999976553 457999999987
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=4e-19 Score=172.36 Aligned_cols=120 Identities=32% Similarity=0.568 Sum_probs=103.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC------CCCeEEEEEEeCCCCCCC
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED------LKDELVISVLDEDKYFND 76 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~------~~~~L~V~V~D~d~~~~d 76 (955)
|+|+|++|+||+.++..|.+||||++.+++.+++|+++.++.||.|||+|.|.+.. ....|.+.|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 58999999999999999999999999999999999999999999999999999954 457899999999998899
Q ss_pred ceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEE
Q 002193 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (955)
Q Consensus 77 ~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~ 124 (955)
++||++.+++.++.... +.....||+|.++.++ ..+.+|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~-~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGK-DDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccC-CCcccEEEECcCCCCC-CccccceEEEEeC
Confidence 99999999999986322 3346899999975542 2357899999873
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.9e-18 Score=171.40 Aligned_cols=126 Identities=31% Similarity=0.505 Sum_probs=108.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeceEEEEEEeCC-CCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~-t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG 80 (955)
|+|+|++|+||++.+.+|.+||||++.+++++.+|+++.+ +.||.|||.|.|.+.++ ...|.|+|||++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 8999999999999999999999999999999999999977 69999999999999543 468999999999888899999
Q ss_pred eeEeeccccccc-CCCCCCcEEEEcccCCC----CCCCCcccEEEEEEEEeeC
Q 002193 81 FLKIPVSRVFDA-DNKSLPTAWHSLQPKNK----KSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 81 ~v~V~L~~l~~~-~~~~~~~~W~~L~~~~~----~~~~~~~G~I~Lsl~~~~~ 128 (955)
++.++|.++... .......+||+|.+..+ ++..+.+|+|+|+++|.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 999999998643 22344689999997653 1234678999999999865
No 6
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.6e-18 Score=166.87 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=104.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCC----CCeEEEEEEeCCCCC-CC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDEDKYF-ND 76 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~----~~~L~V~V~D~d~~~-~d 76 (955)
+|+|+|++|+||++.+..|.+||||++.+++++++|+++.++.||.|||.|.|.+.++ ...|.|+|||++.+. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 5899999999999999999999999999999999999999999999999999999543 357999999999876 89
Q ss_pred ceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 77 ~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
++||++.+++.++.. .+.....||+|..+... .+.+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC--CCCccceEeEeeeCCCC--CCccEEEEEEEEEc
Confidence 999999999999863 23346899999976432 35789999999874
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.76 E-value=9.3e-18 Score=161.57 Aligned_cols=120 Identities=33% Similarity=0.576 Sum_probs=105.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
+|+|+|++|+||+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+....|.|+|||++.++++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 5899999999999999999999999999986 578999999999999999999999766789999999999988999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
++.+++.++.. +.....|++|.++.+ .+..|+|+|.+.|.|
T Consensus 81 ~~~~~l~~l~~---~~~~~~~~~L~~~~~---~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLEL---NKPTEVKLKLEDPNS---DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCC---CCCeEEEEECCCCCC---ccCceEEEEEEEECC
Confidence 99999999864 233678999986553 256899999999854
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=6.8e-18 Score=163.48 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=100.4
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCC-----
Q 002193 3 LVVRVIEARN---IPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF----- 74 (955)
Q Consensus 3 L~V~VieArn---L~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~----- 74 (955)
|+|+|++|+| |+.+|..|.+||||++.+++++.||+++.+++||.|||+|.|.+.+....|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 89999999999999999999999999999999999999999999766679999999999863
Q ss_pred -CCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEE
Q 002193 75 -NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (955)
Q Consensus 75 -~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~L 121 (955)
+|++||++.+++..+... .....||+|....++. .+..|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~-~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSG-VKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCC-ccCCcEEEe
Confidence 899999999999998642 2357899999765432 356788875
No 9
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1.2e-17 Score=161.13 Aligned_cols=118 Identities=27% Similarity=0.464 Sum_probs=101.4
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMD-QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d-~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
|+|+|++|+||++.+ .+|.+||||.+.++++ ..+|++++++.||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999999874 4678999999999765 58999999999999999999999766679999999999999999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
++.+++.++.. ....+.||+|++.... .+.+|+|+|+++|
T Consensus 82 ~~~i~l~~l~~---~~~~~~w~~L~~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHK---YYGKDTWFPLQPVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccC---CCCcEeeEEEEccCCC--CcccEEEEEEEEC
Confidence 99999999864 2346899999976432 2468999999874
No 10
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=1.2e-17 Score=161.93 Aligned_cols=124 Identities=31% Similarity=0.568 Sum_probs=107.6
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCce
Q 002193 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~--~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~ 78 (955)
.|+|+|++|+||+..+. .+.+||||++.++..+.+|++++++.||.|||.|.|.+.+ ....|.|+|||++..+++++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~ 81 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDY 81 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCc
Confidence 48999999999999998 8899999999999999999999999999999999999954 56899999999999889999
Q ss_pred eEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 79 LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
||++.+++.++...........||+|.++.........|+|+|++.+
T Consensus 82 lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 82 LGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999998643223346899999977544445679999999874
No 11
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.3e-17 Score=161.23 Aligned_cols=123 Identities=29% Similarity=0.541 Sum_probs=105.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-------k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~ 74 (955)
.|+|+|++|+||+..+..|.+||||++.+++. +.+|+++.++.||.|||+|.|.+......|.++|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999998999999999999654 57999999999999999999999665678999999999988
Q ss_pred CCceeEeeEeecccccccCCC---CCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 75 NDDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~---~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
++++||++.+++.++...... .....||+|+++... .+..|+|+|+++|.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK--SRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC--CcceeEEEEEEeeC
Confidence 999999999999998753221 235799999975433 35789999999884
No 12
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.6e-17 Score=158.72 Aligned_cols=116 Identities=34% Similarity=0.586 Sum_probs=100.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCceeEe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
|+|+|++|+||+.. .+||||++.+++++.+|++++++.||.|||+|.|.+.+ ....|.++|||++.. ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999887 68999999999999999999999999999999999955 467899999999986 7899999
Q ss_pred eEeecccccccC--CCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 82 LKIPVSRVFDAD--NKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 82 v~V~L~~l~~~~--~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
+.+++.++.... .+.....||+|.++.+ .+.+|+|+|++.|-
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEec
Confidence 999999986422 2234579999997654 36789999999874
No 13
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=6e-17 Score=154.53 Aligned_cols=113 Identities=34% Similarity=0.621 Sum_probs=101.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCC-CCeEEEEEEeCCCCCCCceeEe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
|+|+|++|+||+..+.++.+||||++.+++.+.+|+++.++.||.|||+|.|.+.+. ...|.|+|||++.++++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999999999999999999999999999999999999999999544 6799999999999889999999
Q ss_pred eEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 82 v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
+.+++.++.. ......|++|.+. .|+|++.+.|.
T Consensus 82 ~~~~l~~l~~---~~~~~~w~~L~~~--------~G~~~~~~~~~ 115 (116)
T cd08376 82 CEIDLSALPR---EQTHSLELELEDG--------EGSLLLLLTLT 115 (116)
T ss_pred EEEeHHHCCC---CCceEEEEEccCC--------CcEEEEEEEec
Confidence 9999999854 2346899999842 49999998874
No 14
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=5.2e-17 Score=156.73 Aligned_cols=119 Identities=31% Similarity=0.560 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCC-CCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG 80 (955)
+|+|+|++|+||+..+.++.+||||++.+++.+.+|+++.++.||.|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 6999999999999999889999999999999999999999999999999999999543 578999999999988999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCC--CCCCcccEEEEEE
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKK--SKNKDCGEILLTI 123 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~--~~~~~~G~I~Lsl 123 (955)
++.+++.++... .....||.|.+...+ ...+..|.|+|.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQA---KQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccC---CCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999998542 235789999975433 2346789999876
No 15
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=2.7e-17 Score=157.47 Aligned_cols=115 Identities=32% Similarity=0.550 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCcee
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFV 79 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~-t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~L 79 (955)
+|+|+|++|+||+..+..+.+||||++.+++.+.+|+++.+ +.||.|||.|.|.+.. ....|.|+|||++..+ +++|
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~i 80 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLI 80 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccce
Confidence 69999999999999999999999999999999999998865 7899999999999954 4578999999999865 8999
Q ss_pred EeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 80 G~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
|++.+++.++.... ....||+|.... +..|+|+|+++|
T Consensus 81 G~~~~~l~~~~~~~---~~~~w~~L~~~~-----~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG---EFDDWYELTLKG-----RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC---CCCCcEEeccCC-----cEeeEEEEEEEC
Confidence 99999999986532 358999998542 467999999976
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=6.9e-17 Score=156.75 Aligned_cols=120 Identities=23% Similarity=0.455 Sum_probs=103.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC--CeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG--RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~--~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
|.|+|++|+||+. ..|.+||||++.++ ..+++|+++.++.||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999988 67899999999997 3678999999999999999999999665678999999999988999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
++.+++.++.... ....|++|.++.+. .....|+|+|.+.|...
T Consensus 79 ~~~i~l~~l~~~~---~~~~~~~L~~~~~~-~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNP---SGRQIFPLQGRPYE-GDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCC---ceeEEEEecCCCCC-CCCcceEEEEEEEEecc
Confidence 9999999986533 35789999976432 24678999999999754
No 17
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=1.4e-16 Score=152.54 Aligned_cols=117 Identities=34% Similarity=0.625 Sum_probs=104.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEe
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
+|+|+|++|+||+..+..+.+||||++.++....+|+++.++.||.|||+|.|.+.+....|.|+|||++..+++++||+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGK 81 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeE
Confidence 58999999999999999999999999999998899999999999999999999997767899999999998889999999
Q ss_pred eEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 82 v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+.+++.++... ...||.|..+... .+..|+|+|++.+
T Consensus 82 ~~~~l~~~~~~-----~~~~~~l~~~~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 82 VAIPLLSIKNG-----ERKWYALKDKKLR--TRAKGSILLEMDV 118 (119)
T ss_pred EEEEHHHCCCC-----CceEEECcccCCC--CceeeEEEEEEEe
Confidence 99999988432 4689999866433 3468999999876
No 18
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=1.3e-16 Score=156.66 Aligned_cols=122 Identities=24% Similarity=0.474 Sum_probs=102.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC----------CCCeEEEEEEeCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED----------LKDELVISVLDED 71 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~----------~~~~L~V~V~D~d 71 (955)
+|+|+|++|+||+.++..|.+||||++.+++.+.+|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 699999999999999999999999999999999999999999999999999998521 1257999999999
Q ss_pred CCCCCceeEeeEe-ecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 72 KYFNDDFVGFLKI-PVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 72 ~~~~d~~LG~v~V-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
..++|++||++.+ ++..+..........+|++|.... ...|+|+|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~-----~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG-----QSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC-----CchhheeEEeEEEEe
Confidence 9889999999987 554443323345578999998443 468999999998753
No 19
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=2.1e-16 Score=153.44 Aligned_cols=120 Identities=20% Similarity=0.312 Sum_probs=105.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEe
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
-|+|+|++|+||+..+..|.+||||++.+++++.+|++++++.||.|||.|.|.+.+....|.|+|||++.. +|++||+
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG~ 82 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLGQ 82 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceEE
Confidence 389999999999999999999999999999999999999999999999999999977788999999999986 5899999
Q ss_pred eEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 82 v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
+.+++.++. .....|++|..+..+.+.+..|.|.|++.+.+
T Consensus 83 ~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 83 ATLSADPND-----SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEecccCC-----CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999998752 23568999986555556778999999998754
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=1.6e-16 Score=156.40 Aligned_cols=117 Identities=34% Similarity=0.621 Sum_probs=99.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG 80 (955)
+|+|+|++|+||+..+..|.+||||++.++...++|+++.++.||.|||+|.|.+.+ ....|.|+|||++.+++|++||
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG 95 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLG 95 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeE
Confidence 589999999999999999999999999999999999999999999999999999954 3468999999999988999999
Q ss_pred eeEeecccccccCCCCCC--cEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 81 FLKIPVSRVFDADNKSLP--TAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~--~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
++.+++.++......... ..|..|. ....|+|+|++.+
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~~~~~-------~~~~g~i~l~~~~ 135 (136)
T cd08375 96 RTEIRVADILKETKESKGPITKRLLLH-------EVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEHHHhccccccCCCcEEEEeccc-------cccceeEEEEEEe
Confidence 999999998752222222 3455553 2457999999986
No 21
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.4e-16 Score=154.81 Aligned_cols=115 Identities=34% Similarity=0.599 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCC--------
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~-------- 73 (955)
+|+|+|++|++|+..+..|.+||||++.+++...+|+++.++.||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 699999999999999999999999999999899999999999999999999999865567899999999852
Q ss_pred ---CCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEE
Q 002193 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (955)
Q Consensus 74 ---~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl 123 (955)
+.+++||++.+++.++. .....||.|.++.+. ...+|+|+|++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~-----~~~~~w~~L~~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLS-----GEMDVWYNLEKRTDK--SAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHcc-----CCCCeEEECccCCCC--CcEeEEEEEEC
Confidence 46899999999998873 225799999987643 45799999974
No 22
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.71 E-value=4.3e-17 Score=160.89 Aligned_cols=91 Identities=44% Similarity=0.749 Sum_probs=87.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEe
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
.|+|+|++|.||..+|..+.+||||++++++++.+|+++.+++||.|||+|.|.+.++...|.++|||+|.++.||++|+
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~ 86 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGE 86 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccce
Confidence 48999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccccc
Q 002193 82 LKIPVSRVFDA 92 (955)
Q Consensus 82 v~V~L~~l~~~ 92 (955)
++|++..+.+.
T Consensus 87 A~I~l~p~~~~ 97 (168)
T KOG1030|consen 87 ATIPLKPLLEA 97 (168)
T ss_pred eeeccHHHHHH
Confidence 99999999753
No 23
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=7.9e-17 Score=160.44 Aligned_cols=118 Identities=36% Similarity=0.526 Sum_probs=96.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEe---------------CC-C
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE---------------DL-K 60 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~---------------~~-~ 60 (955)
+|+|+|++|+||++ .+|.+||||++.+.. .+++|+++.++.||+|||+|.|.+. +. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999988 578999999999965 5789999999999999999999984 11 2
Q ss_pred CeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCC--------CCCcccEEEEEE
Q 002193 61 DELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS--------KNKDCGEILLTI 123 (955)
Q Consensus 61 ~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~--------~~~~~G~I~Lsl 123 (955)
..|.|.|||++.+++++|||++.|++..+... ......||+|.++..++ +....|.|+|.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccccc--CCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999998643 12368899998775432 234567777764
No 24
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.70 E-value=4.2e-16 Score=151.40 Aligned_cols=118 Identities=24% Similarity=0.435 Sum_probs=97.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeceEEEEEEeCCC-CeEEEEEEeCCCCCCCcee
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYFNDDFV 79 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~d~~~~d~~L 79 (955)
.|+|+|++|+||++. +.+||||++.+++.+ .+|+++ ++.||.|||+|.|.+.+.. ..|.|.|||++..+++++|
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 489999999999875 478999999998744 688874 6899999999999874333 5799999999998999999
Q ss_pred EeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 80 G~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
|++.+||..+.. +...+.||+|.+... ......|+|+|+++|..
T Consensus 81 G~v~i~l~~l~~---~~~~~~W~~L~~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQN---GQETDEWYPLSSASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccC---CCcccEeEEcccCCC-CCCCcCcEEEEEEEEEc
Confidence 999999999854 233689999997643 22357899999999974
No 25
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.70 E-value=3.4e-16 Score=150.86 Aligned_cols=118 Identities=30% Similarity=0.501 Sum_probs=101.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
|.|+|++|+||++++..|.+||||++.+++. ..+|+++.++.||.|||.|.|.+.+....|.|.|||++.++++++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 8999999999999999999999999999865 479999999999999999999997666899999999999999999999
Q ss_pred eEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEE
Q 002193 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (955)
Q Consensus 82 v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~ 124 (955)
+.+++..+... ....+.|++|.+.... ....|+|+|.+.
T Consensus 82 ~~~~~~~~~~~--~~~~~~W~~L~~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAH--PRGIDGWMNLTEVDPD--EEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccC--CCCCCcEEECeeeCCC--CccccEEEEEEE
Confidence 99998887531 2235789999875422 346899999875
No 26
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.69 E-value=3.1e-16 Score=150.52 Aligned_cols=113 Identities=32% Similarity=0.485 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCce
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~ 78 (955)
|+|+|++|+||+..+..+.+||||++.++ ..+++|+++.++.||.|||+|.|.+.. ....|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999999988999999999986 357899999999999999999999943 346799999999998 8999
Q ss_pred eEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 79 LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
||++.+++.++.. +.....|++|.+. ..|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~---g~~~~~~~~L~~~-------~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKL---GEKVRVTFSLNPQ-------GKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCC---CCcEEEEEECCCC-------CCceEEEEEEee
Confidence 9999999999854 2346899999853 369999988764
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.68 E-value=2.4e-16 Score=152.20 Aligned_cols=99 Identities=31% Similarity=0.503 Sum_probs=87.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEE-e---CCCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-E---DLKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v-~---~~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++.+ .+.+||||++.+. ..+++|++++++.||.|||+|.|.+ + .....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 6899999999999999 8999999999996 3478999999999999999999997 2 135789999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
++++++||++.++|.++... .....||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDLS---QETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEeccccccC---CCccceEEC
Confidence 99999999999999998642 336889987
No 28
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=5e-16 Score=150.14 Aligned_cols=119 Identities=24% Similarity=0.432 Sum_probs=101.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCC--Cce
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN--DDF 78 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~--d~~ 78 (955)
.|+|+|++|+||+..+..+.+||||++.++ .+.++|+++.++.||.|||+|.|.+.. ...|.|+|||++.++. +++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 389999999999999999999999999996 678999999999999999999999955 6799999999998765 589
Q ss_pred eEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEE
Q 002193 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (955)
Q Consensus 79 LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl 123 (955)
||++.+++.++..... ....|++|............|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD--TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC--CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999865322 347799997665444456689999876
No 29
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=3e-16 Score=150.79 Aligned_cols=103 Identities=27% Similarity=0.428 Sum_probs=87.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE-C----C--eEEEeeeecCCCCCeeceEEEEEEeCC----CCeEEEEEEeC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-G----R--QRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDE 70 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l-~----~--~k~rTkvi~~t~nP~WnE~F~F~v~~~----~~~L~V~V~D~ 70 (955)
+|+|+|++|+||+..+ .|.+||||+|++ + . ++++|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5999999999999987 489999999998 2 2 357899999999999999999999432 25699999999
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
+..+++++||++.+|+.++...+ ....|++|.++.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCcc
Confidence 98788999999999999996432 368899998654
No 30
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.67 E-value=1.1e-15 Score=154.11 Aligned_cols=120 Identities=28% Similarity=0.477 Sum_probs=101.3
Q ss_pred EEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeecCCCCCeece
Q 002193 2 KLVVRVIEARNIPAMD------------------------------QNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEE 50 (955)
Q Consensus 2 ~L~V~VieArnL~~~d------------------------------~~g~sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE 50 (955)
+|.|+|++|++|+.+| ..|.+||||++.+++.+ .+|+++.++.||.|||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE 87 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNE 87 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccce
Confidence 5899999999999987 35678999999998755 6999999999999999
Q ss_pred EEEEEEeCCCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 51 EFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 51 ~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
+|.|.+......|.|.|||++.++ +++||++.+|+.++.. +...+.||+|.+..++. .+..|+|+|++.|.
T Consensus 88 ~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~---g~~~~~w~~L~~~~~~~-~~~~~~l~v~~~f~ 158 (158)
T cd04015 88 SFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS---GEPVEGWLPILDSNGKP-PKPGAKIRVSLQFT 158 (158)
T ss_pred EEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC---CCCcceEEECcCCCCCC-CCCCCEEEEEEEEC
Confidence 999998766778999999999864 6899999999999864 33468999998765443 24568999999883
No 31
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.67 E-value=4.6e-17 Score=141.15 Aligned_cols=67 Identities=40% Similarity=0.726 Sum_probs=48.7
Q ss_pred hhhhcccCCCCCCeeEEEEEeeEee-ecccCeEEEeecceEEEEecCCCcee-EEEEeccccccccccC
Q 002193 629 SAFQKLFGLPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 695 (955)
Q Consensus 629 ~~F~~lF~lp~~E~Li~~f~Cal~r-~~~~~GrlYiS~~~icF~S~~~g~~t-k~~Ip~~dI~~I~k~~ 695 (955)
++||++|+||.+|.|+.+|.|+|++ +++.+|+||||++||||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 4699999999999999999999999 99999999999999999999999888 9999999999999863
No 32
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.67 E-value=3e-16 Score=149.28 Aligned_cols=98 Identities=22% Similarity=0.382 Sum_probs=82.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~ 73 (955)
.+|+|+|++|+||+ ..|.+||||++.+.. .+++|+++++++||+|||+|.|.++. ....|.++|||+|++
T Consensus 14 ~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drf 90 (118)
T cd08677 14 AELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRF 90 (118)
T ss_pred CEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence 37999999999998 346799999999963 57899999999999999999999933 357899999999999
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
+++++||++.+++.++... .....|..|
T Consensus 91 s~~d~IG~v~l~l~~~~~~---~~~~~W~~~ 118 (118)
T cd08677 91 SRHSTLGELRLKLADVSMM---LGAAQWVDL 118 (118)
T ss_pred CCCceEEEEEEccccccCC---ccccchhcC
Confidence 9999999999999987332 224567654
No 33
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.67 E-value=7.5e-16 Score=147.72 Aligned_cols=113 Identities=36% Similarity=0.646 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEe-CCCCeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQ------NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~------~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~-~~~~~L~V~V~D~d~~~ 74 (955)
.|+|+|++|+||+..+. .|.+||||++.+++..++|+++.++.||.|||+|.|.+. .....|.|+|||++..
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~- 80 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD- 80 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-
Confidence 48999999999998875 368999999999999999999999999999999999994 4567999999999987
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
++++||++.+++.++... .....||+|.+. ..|+|+|.+.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~-------~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK---GFIDEWLPLEDV-------KSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhccc---CccceEEECcCC-------CCceEEEEEeC
Confidence 899999999999998642 246899999853 46999998764
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=4.6e-16 Score=151.46 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=90.5
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~-g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++++.. |.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.+.|||.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 699999999999999875 8999999999952 36799999999999999999999843 24689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
++++++||++.|+|.++...+.......||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 899999999999999986544445678999983
No 35
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.66 E-value=5.2e-16 Score=145.74 Aligned_cols=101 Identities=30% Similarity=0.489 Sum_probs=90.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCceeEe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
|.|+|++|+||+..+..+.+||||++++++++++|+++.++.||.|||+|.|.+.+ ....|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 89999999999999988999999999999999999999999999999999999965 45789999999986 789999
Q ss_pred eEeecccccccCCCCCCcEEEEcccC
Q 002193 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (955)
Q Consensus 82 v~V~L~~l~~~~~~~~~~~W~~L~~~ 107 (955)
+.++|.++...+ ....+.||+|.++
T Consensus 79 ~~i~l~~l~~~~-~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP-DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc-cceeeeeEecCCC
Confidence 999999997543 3346899999854
No 36
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=7.7e-16 Score=147.93 Aligned_cols=100 Identities=30% Similarity=0.465 Sum_probs=88.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEe
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
+|.|+|++|++|+..+ ..||||++++++++.+|+++++ .||.|||+|.|.+.+....|.|+|||++.+ .|++||+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 6999999999997655 4689999999999999999987 599999999999977777799999999974 8999999
Q ss_pred eEeecccccccCCCCCCcEEEEcccC
Q 002193 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (955)
Q Consensus 82 v~V~L~~l~~~~~~~~~~~W~~L~~~ 107 (955)
+.|+|.++...+ .....+||+|.+.
T Consensus 78 v~i~L~~v~~~~-~~~~~~Wy~L~~~ 102 (127)
T cd08394 78 VWIPLSTIRQSN-EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEhHHcccCC-CCCCCccEecChH
Confidence 999999998653 4567999999964
No 37
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=7.3e-16 Score=152.87 Aligned_cols=105 Identities=28% Similarity=0.423 Sum_probs=90.6
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEE-eCCCCC
Q 002193 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d-~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~-D~d~~~ 74 (955)
+|.|+|++|+||++.+ ..|.+||||++.+.. .+++|+++++++||+|||+|.|.+......|.|+|| |++.+.
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 6899999999999874 578899999999943 378999999999999999999999866789999999 688888
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcccCCC
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~ 109 (955)
++++||++.|+|.++.. ......||+|.+...
T Consensus 110 ~~~~iG~~~i~L~~l~~---~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 110 KKVFMGVAQILLDDLDL---SNLVIGWYKLFPTSS 141 (146)
T ss_pred CCceEEEEEEEcccccC---CCCceeEEecCCccc
Confidence 89999999999999843 223578999997653
No 38
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=7.8e-16 Score=145.80 Aligned_cols=104 Identities=37% Similarity=0.684 Sum_probs=91.7
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCee-ceEEEEEEeCC---CCeEEEEEEeCCCCCCCc
Q 002193 3 LVVRVIEARNIPAMDQ-NGYSDPYVRLQLGRQRFKTKVVRKSLSPSW-EEEFSFKVEDL---KDELVISVLDEDKYFNDD 77 (955)
Q Consensus 3 L~V~VieArnL~~~d~-~g~sDPYv~v~l~~~k~rTkvi~~t~nP~W-nE~F~F~v~~~---~~~L~V~V~D~d~~~~d~ 77 (955)
|+|+|++|+||+.++. .|.+||||++.+++.+++|+++.++.||.| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 688999999999999999999999999999 99999999442 468999999999989999
Q ss_pred eeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 78 ~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
+||++.+++.++...........||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999976433444789999974
No 39
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.65 E-value=2.9e-15 Score=145.11 Aligned_cols=118 Identities=27% Similarity=0.420 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCc
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDD 77 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~---~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~ 77 (955)
.|+|+|++|+||+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999999999999999864 36899999999999999999999954 4578999999999988999
Q ss_pred eeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 78 ~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
+||++.+++..+....++.....|++|.+ .|+|+|.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT---------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC---------CCeEEEEEEEeee
Confidence 99999999987654322334678999973 4899999998754
No 40
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.65 E-value=8.2e-16 Score=149.12 Aligned_cols=101 Identities=32% Similarity=0.472 Sum_probs=87.8
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~-g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++++.. |.+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.++|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 699999999999999976 889999999994 245899999999999999999999842 24689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
++++++||++.++|.++... .....||+|+
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 99999999999999998542 3467899985
No 41
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=3e-15 Score=144.14 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=99.0
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCce
Q 002193 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 2 ~L~V~VieArnL~~~d-~~g~sDPYv~v~l~~--~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~ 78 (955)
.|+|+|++|+||+..+ ..+.+||||++.++. ...+|+++.++.||.|||.|.|.+.+....|.|+|||++..+++++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~ 82 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCce
Confidence 5899999999999765 346799999999987 7899999999999999999999997667899999999999889999
Q ss_pred eEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 79 LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
||++.+++.++..... ....|+.+.. . .+.+|+|+++++|.|
T Consensus 83 iG~~~~~l~~l~~~~~--~~~~~~~~~~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 83 IGTAEFDLSSLLQNPE--QENLTKNLLR-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEHHHhccCcc--ccCcchhhhc-C----CccceEEEEEEEeCC
Confidence 9999999999875322 1234555542 2 245799999999964
No 42
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.63 E-value=2.4e-15 Score=145.86 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=87.2
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~-~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++.+. .|.+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 69999999999998875 4789999999995 235899999999999999999999943 24689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
++++++||++.+++.++... .....||+|+
T Consensus 96 ~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99999999999999998542 3478999984
No 43
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.63 E-value=7.1e-15 Score=143.76 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCeE-EEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeC
Q 002193 2 KLVVRVIEARNIPAMDQN----------GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE 70 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~----------g~sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~ 70 (955)
.|+|+|++|+||+..+.. |.+||||++.+++++ .+|+++.++.||.|||+|.|.+. ....|.|.|||+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~ 83 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeC
Confidence 589999999999988863 679999999998765 68999999999999999999996 457899999999
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
+.++.+++||++.++|.++... .......|++|.+ .|+|+|+++|..
T Consensus 84 ~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~---------~G~l~l~~~~~~ 130 (132)
T cd04014 84 AAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEP---------QGKLHVKIELKG 130 (132)
T ss_pred CCCCCCceEEEEEEEhHHhccc-CCCcccEEEEccC---------CcEEEEEEEEec
Confidence 9888899999999999998753 1234689999972 499999999875
No 44
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=6.2e-15 Score=143.17 Aligned_cols=116 Identities=22% Similarity=0.391 Sum_probs=100.4
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCCCCCceeEeeE
Q 002193 7 VIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDFVGFLK 83 (955)
Q Consensus 7 VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~d~~LG~v~ 83 (955)
|++|+||+. ..|.+||||++.+++.+++|++++++.||.|||+|.|.+.. ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 67889999999999999999999999999999999999943 4678999999999988999999999
Q ss_pred eecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCC
Q 002193 84 IPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (955)
Q Consensus 84 V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~ 130 (955)
+++.++... .....|++|....++ ...|+|+++++|.+...
T Consensus 80 ~~l~~l~~~---~~~~~~~~L~~~~~~---~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 80 VSLQDLVSE---GLLEVTEPLLDSNGR---PTGATISLEVSYQPPDG 120 (127)
T ss_pred EEhhHcccC---CceEEEEeCcCCCCC---cccEEEEEEEEEeCCCC
Confidence 999998642 346789999865542 34699999999987644
No 45
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3e-15 Score=172.90 Aligned_cols=153 Identities=33% Similarity=0.521 Sum_probs=128.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeceEEEEEEe---CCCCeEEEEEEeCCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~---~k~rTkvi~~t~nP~WnE~F~F~v~---~~~~~L~V~V~D~d~~~~ 75 (955)
.|.|+|++|+||++.+..|.+||||++.+.+ .+.+|++.++++||.|||+|.|.+. -....|.+.|||+|+|++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 5899999999999999778899999999964 5699999999999999999999982 346899999999999999
Q ss_pred CceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCCCCcccCCCCCCCccccCCCCCCCCC
Q 002193 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTESPKRSFS 155 (955)
Q Consensus 76 d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~ 155 (955)
+++||++.++|..+.... ....|.+|......... ..|+|+++++|.+.... +.+..+++.++..++.+
T Consensus 248 ~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~~~~~~-~~gel~~sL~Y~p~~g~-------ltv~v~kar~L~~~~~~ 316 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLLS---TTLFWKDLQPSSTDSEE-LAGELLLSLCYLPTAGR-------LTVVVIKARNLKSMDVG 316 (421)
T ss_pred ccEEEEEEecCccccccc---cceeeeccccccCCccc-ccceEEEEEEeecCCCe-------EEEEEEEecCCCcccCC
Confidence 999999999988874322 25779999987544332 23899999999988543 45678999999999999
Q ss_pred CCCCCCCCCC
Q 002193 156 GPSNAPSPVR 165 (955)
Q Consensus 156 g~s~~~~~~~ 165 (955)
|.++++....
T Consensus 317 ~~~d~~Vk~~ 326 (421)
T KOG1028|consen 317 GLSDPYVKVT 326 (421)
T ss_pred CCCCccEEEE
Confidence 9998875433
No 46
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=3.4e-15 Score=141.58 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCC-----CCeEEEEEEeCCCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYFND 76 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~-----~~~L~V~V~D~d~~~~d 76 (955)
.|+|+|++|+||+ .|.+||||++++++++++|+++.++.||.|||+|.|.+..+ ...|.|+|||++.++++
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5899999999998 57899999999999999999999999999999999998332 36899999999998889
Q ss_pred ceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 77 ~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
++||++.+++.++.....+.....|++|..
T Consensus 81 ~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999987666667789999974
No 47
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=4.2e-15 Score=148.48 Aligned_cols=107 Identities=26% Similarity=0.504 Sum_probs=92.2
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEE--eCCCCeEEE
Q 002193 2 KLVVRVIEARNIPAMDQNG--------------YSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKV--EDLKDELVI 65 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g--------------~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v--~~~~~~L~V 65 (955)
+|.|+|++|++|+.+|..+ .+||||+|.+++++.+|++++++.||+|||+|.|.+ ++....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999988554 689999999999999999999999999999999997 344578999
Q ss_pred EEEeCCCCCCCceeEeeEeecccccccCCC----CCCcEEEEcccCC
Q 002193 66 SVLDEDKYFNDDFVGFLKIPVSRVFDADNK----SLPTAWHSLQPKN 108 (955)
Q Consensus 66 ~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~----~~~~~W~~L~~~~ 108 (955)
+|||+|..++|++||.+.+++.++...... ...+.|+.|....
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999988999999999999998653321 2468999998653
No 48
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.61 E-value=2.6e-15 Score=145.22 Aligned_cols=116 Identities=21% Similarity=0.374 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeec-CCCCCeeceEEEEEEeCC-----CCeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVR-KSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-~k~rTkvi~-~t~nP~WnE~F~F~v~~~-----~~~L~V~V~D~d~~~ 74 (955)
+|+|+|++|++|+..+..+.+||||++.+++ .+.+|+++. ++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 889999986 589999999999999554 578999999999888
Q ss_pred CCceeEeeEeecccccccCCC--CCCcEEEEcccCCCCCCCCcccEEEE
Q 002193 75 NDDFVGFLKIPVSRVFDADNK--SLPTAWHSLQPKNKKSKNKDCGEILL 121 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~G~I~L 121 (955)
++++||++.+++.++...... .....||+|..+.+ +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g----~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG----KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC----CcCeEEeC
Confidence 999999999999999764321 13578999997664 45788874
No 49
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.61 E-value=3e-15 Score=143.96 Aligned_cols=100 Identities=27% Similarity=0.505 Sum_probs=85.2
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEe--CCCCeEEEEEEeCCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKY 73 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~--~~~~~L~V~V~D~d~~ 73 (955)
.+|.|+|++|+||++++ .|.+||||++.+.+ .+++|+++.++.||.|||+|.|.+. +....|.|+|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 37999999999999998 88999999999963 3679999999999999999999983 2346799999999976
Q ss_pred C-CCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 74 F-NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 74 ~-~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
. ++++||++.||+.++.. +.....||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~---~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVN---QKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhcc---CccccceEeC
Confidence 5 47899999999999963 2235799986
No 50
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=4.1e-15 Score=143.64 Aligned_cols=101 Identities=31% Similarity=0.572 Sum_probs=87.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC----CCCeEEEEEEeCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDED 71 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~----~~~~L~V~V~D~d 71 (955)
++|.|+|++|+||+..+.++.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 47999999999999999999999999999964 57899999999999999999998622 3568999999999
Q ss_pred CCCCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 72 ~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
.++++++||++.++|.+... + ....||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~~-~---~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADALL-D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEecccccc-c---CCcceEECc
Confidence 98899999999999998422 1 247899985
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.60 E-value=7.1e-15 Score=142.01 Aligned_cols=102 Identities=39% Similarity=0.670 Sum_probs=89.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF 74 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~---~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~ 74 (955)
.+|+|+|++|+||++.+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+.. ....|.|+|||++.++
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~ 95 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFS 95 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCC
Confidence 36999999999999999999999999999853 46899999999999999999999843 2468999999999999
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
++++||++.+++.++.. +...+.|++|.
T Consensus 96 ~~~~lG~~~i~l~~~~~---~~~~~~W~~l~ 123 (124)
T cd08385 96 KHDLIGEVRVPLLTVDL---GHVTEEWRDLE 123 (124)
T ss_pred CCceeEEEEEecCcccC---CCCcceEEEcc
Confidence 99999999999999854 33478999986
No 52
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.60 E-value=7.4e-15 Score=142.00 Aligned_cols=103 Identities=34% Similarity=0.627 Sum_probs=89.5
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEEEeC----CCCeEEEEEEeCCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~v~~----~~~~L~V~V~D~d~~ 73 (955)
++|+|+|++|+||+..+..+.+||||++.+. ..+.+|++++++.||.|||+|.|.+.+ ....|.++|||++.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999999999999999999993 467899999999999999999998521 235799999999998
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
+++++||++.+++.++.. ......|+.|++
T Consensus 96 ~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 899999999999999854 234689999874
No 53
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.60 E-value=6.1e-15 Score=142.52 Aligned_cols=101 Identities=30% Similarity=0.572 Sum_probs=89.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEEEeCC---CCeEEEEEEeCCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~~~ 75 (955)
+|.|+|++|+||++.+..|.+||||++.++ ....+|++++++.||.|||+|.|.+... ...|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 96 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSR 96 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCC
Confidence 689999999999999999999999999994 3468999999999999999999998432 4689999999999889
Q ss_pred CceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 76 d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
+++||++.+++.++...+ ....||+|+
T Consensus 97 ~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 97 DECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CceeEEEEEecccccCCC---CcceEEECc
Confidence 999999999999996432 468899987
No 54
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.60 E-value=7.1e-15 Score=143.18 Aligned_cols=104 Identities=37% Similarity=0.600 Sum_probs=87.8
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEE-Ee--C-CCCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VE--D-LKDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~-g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~-v~--~-~~~~L~V~V~D~d~~ 73 (955)
+|+|+|++|+||+..+.. +.+||||++.+. .++.+|++++++.||.|||+|.|. +. + ....|.++|||++.+
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 699999999999998876 899999999985 346799999999999999999994 42 2 235799999999999
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
+++++||++.++|.++...+++ ....|.+|++
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~~~ 128 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEG-ELLVSREIQP 128 (128)
T ss_pred CCCceeEEEEEeccccCCCCCc-eEEEEEeccC
Confidence 9999999999999998653322 2578998874
No 55
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.59 E-value=4.9e-15 Score=140.58 Aligned_cols=98 Identities=30% Similarity=0.589 Sum_probs=86.5
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEEEeC----CCCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~-g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~v~~----~~~~L~V~V~D~d~~ 73 (955)
.|+|+|++|+||+..+.. +.+||||++.+. +...+|++++++.||.|||+|.|.+.. ....|.++|||++.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 589999999999999988 899999999984 356899999999999999999998843 346899999999999
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
++|++||++.+++.++.. ...|++++
T Consensus 82 ~~dd~lG~~~i~l~~l~~------~~~~~~~~ 107 (111)
T cd04041 82 TADDRLGRVEIDLKELIE------DRNWMGRR 107 (111)
T ss_pred CCCCcceEEEEEHHHHhc------CCCCCccc
Confidence 999999999999999963 46688775
No 56
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=2.1e-14 Score=142.15 Aligned_cols=119 Identities=18% Similarity=0.337 Sum_probs=98.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCC-C---CCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDK-Y---FND 76 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~-~---~~d 76 (955)
.|.|.|++|+||++++ +|||.+.+++.+ .||+++.++.||.|+|+|.|........|.|.||+.+. . .++
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCC
Confidence 5899999999999864 799999999987 59999999999999999999875556789999987653 2 267
Q ss_pred ceeEeeEeecccccccCCCCCCcEEEEcccCCCCC------CCCcccEEEEEEEEeeC
Q 002193 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS------KNKDCGEILLTISFSHN 128 (955)
Q Consensus 77 ~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~------~~~~~G~I~Lsl~~~~~ 128 (955)
++||.+.||+.++.. +...+.||+|.+..+++ .....|+|++++.|.+.
T Consensus 87 ~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 87 QLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 899999999999963 44579999999876553 12456899999999864
No 57
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.59 E-value=1.3e-14 Score=140.62 Aligned_cols=102 Identities=32% Similarity=0.491 Sum_probs=88.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
.+|+|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.+.|||.+.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 3799999999999999998999999999995 467899999999999999999999832 24689999999997
Q ss_pred C--CCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 73 Y--FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 73 ~--~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
+ +++++||++.+++.++... .....||+|.
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred ccCCCCceEEEEEEeccccccc---CCccceEECc
Confidence 5 6899999999999998542 3468999984
No 58
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.58 E-value=7.6e-15 Score=142.03 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=87.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~------~~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++.+..|.+||||++.+. ..+++|++++++.||+|||+|.|++.. ....|.|+|||++.
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 699999999999999988999999999984 247899999999999999999999943 35799999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
++++++||++.|+|.++.... .....||.|
T Consensus 95 ~~~~~~lG~~~i~L~~~~~~~--~~~~~Wy~l 124 (124)
T cd08680 95 DQQEECLGGAQISLADFESSE--EMSTKWYNL 124 (124)
T ss_pred CCceeEEEEEEEEhhhccCCC--ccccccccC
Confidence 899999999999999984322 135789876
No 59
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=2.8e-14 Score=140.35 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=98.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eEEEeeeecCCCCCee-ceEEEEEEeCCCCeEEEEE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------QRFKTKVVRKSLSPSW-EEEFSFKVEDLKDELVISV 67 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-------------~k~rTkvi~~t~nP~W-nE~F~F~v~~~~~~L~V~V 67 (955)
...|.+++|+||+ ++..|.+||||++.+.+ ++++|+++.+++||.| ||+|.|.+. ....|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4679999999998 77889999999999942 3689999999999999 999999995 346899999
Q ss_pred EeCCCCCC---CceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEE
Q 002193 68 LDEDKYFN---DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (955)
Q Consensus 68 ~D~d~~~~---d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl 123 (955)
||++..++ +++||++.+++.++...........||+|..+.. ....+|+|.|.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP--TDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC--CCcEEEEEEEEe
Confidence 99875333 7899999999999986555445678999997764 356889999876
No 60
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.58 E-value=1.3e-14 Score=137.22 Aligned_cols=92 Identities=25% Similarity=0.480 Sum_probs=81.4
Q ss_pred EEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC--CCCeEEEEEEeCCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQN----GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYFN 75 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~----g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~~~ 75 (955)
.|.|+|++|+||++.+.. +.+||||++++++++++|++++++.||+|||.|.|.+.+ ....|.++|||++.+++
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~ 81 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSF 81 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCC
Confidence 489999999999987642 348999999999999999999999999999999999843 34589999999999999
Q ss_pred CceeEeeEeecccccccC
Q 002193 76 DDFVGFLKIPVSRVFDAD 93 (955)
Q Consensus 76 d~~LG~v~V~L~~l~~~~ 93 (955)
|++||++.++|.++....
T Consensus 82 dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 82 NDYVATGSLSVQELLNAA 99 (108)
T ss_pred CcceEEEEEEHHHHHhhC
Confidence 999999999999997543
No 61
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.58 E-value=1.1e-14 Score=141.03 Aligned_cols=102 Identities=34% Similarity=0.491 Sum_probs=88.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEE-EeC---CCCeEEEEEEeCCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~-v~~---~~~~L~V~V~D~d~~ 73 (955)
.+|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ .||+|||+|.|+ +.. ....|.++|||++.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 4799999999999999999999999998773 35789999887 999999999998 532 357899999999999
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
+++++||++.|+|.++.. ......||+|++
T Consensus 95 ~~~~~lG~~~i~L~~l~~---~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNL---EGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCC---CCCceEEEeCCC
Confidence 999999999999999954 234789999974
No 62
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=2.8e-14 Score=136.13 Aligned_cols=112 Identities=28% Similarity=0.444 Sum_probs=89.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCCCCCce
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~d~~ 78 (955)
|+|+|++|+||+.. +.+||||++.++++ .++|+++.+ .||.|||+|.|.+.+ ....|.|.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 88999999999876 78999999999875 479999988 999999999999955 33578888999887666667
Q ss_pred eEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 79 LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+|.+.+..... +...+.||+|.++... ....|+|+|.+.|
T Consensus 78 ~g~v~l~~~~~-----~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL-----GQGKDEWFPLTPVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC-----CCcceeEEECccCCCC--CCcCceEEEEEEC
Confidence 77665544332 2346899999977543 3568999999875
No 63
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.56 E-value=4.8e-15 Score=125.28 Aligned_cols=59 Identities=37% Similarity=0.564 Sum_probs=56.8
Q ss_pred CCCCCCeeEEEEEeeEeeecccCeEEEeecceEEEEecCCCcee-EEEEecccccccccc
Q 002193 636 GLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVL 694 (955)
Q Consensus 636 ~lp~~E~Li~~f~Cal~r~~~~~GrlYiS~~~icF~S~~~g~~t-k~~Ip~~dI~~I~k~ 694 (955)
+||++|+|+.+|.|+|+++++++||||||++||||+|+.+|+.+ +++||++||.+|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 38999999999999999999999999999999999999999988 999999999999985
No 64
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.56 E-value=2.7e-14 Score=137.52 Aligned_cols=101 Identities=27% Similarity=0.450 Sum_probs=87.2
Q ss_pred CEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCC
Q 002193 1 MKLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (955)
Q Consensus 1 m~L~V~VieArnL~~~d-~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (955)
.+|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|+++.++.||.|||+|.|.+.. ....|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 37999999999999998 778999999999842 46899999999999999999999843 2468999999999
Q ss_pred CCCCCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 72 ~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
.++++++||++.+++.++... .....||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~---~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDLD---SQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEeccccccc---CCCccEEEC
Confidence 988999999999999998532 236889987
No 65
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.55 E-value=3.6e-14 Score=137.11 Aligned_cols=104 Identities=32% Similarity=0.565 Sum_probs=92.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecC-CCCCeeceEEEEEEeCC----CCeEEEEEEeCCCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL----KDELVISVLDEDKYFND 76 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~-t~nP~WnE~F~F~v~~~----~~~L~V~V~D~d~~~~d 76 (955)
+|.|+|++|+||+..+..+.+||||++.+++..++|+++.+ +.||.|||+|.|.+... ...|.|+|||.+.+.++
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDD 81 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCC
Confidence 69999999999999998899999999999998899999885 89999999999999654 46899999999998899
Q ss_pred ceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 77 ~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
++||++.+++.++...+ ..+.|+.|.+..
T Consensus 82 ~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 99999999999997532 368999999753
No 66
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.54 E-value=6.7e-14 Score=134.87 Aligned_cols=102 Identities=30% Similarity=0.556 Sum_probs=88.3
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d-~~g~sDPYv~v~l~---~~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~ 74 (955)
+|.|+|++|+||+..+ ..+.+||||++.+. ....+|++++++.||.|||.|.|.+.. ....|.|.|||++..+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~ 94 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFS 94 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCC
Confidence 6999999999999998 68889999999984 356889999999999999999999843 2468999999999988
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
++++||++.++|.++.... ....|++|.+
T Consensus 95 ~~~~iG~~~i~L~~l~~~~---~~~~w~~L~~ 123 (123)
T cd08390 95 RHCIIGHVLFPLKDLDLVK---GGVVWRDLEP 123 (123)
T ss_pred CCcEEEEEEEeccceecCC---CceEEEeCCC
Confidence 8999999999999986532 3579999873
No 67
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.54 E-value=3.3e-14 Score=139.41 Aligned_cols=94 Identities=33% Similarity=0.507 Sum_probs=83.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCeeceEEEEEEeC-----CCCeEEEEEE
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRKSLSPSWEEEFSFKVED-----LKDELVISVL 68 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~-------~~k~rTkvi~~t~nP~WnE~F~F~v~~-----~~~~L~V~V~ 68 (955)
++|+|+|++|+||+..+..|.+||||++.+. ..+++|++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 3699999999999999988999999999995 347899999999999999999999843 2468999999
Q ss_pred eCCCCCCCceeEeeEeecccccccCC
Q 002193 69 DEDKYFNDDFVGFLKIPVSRVFDADN 94 (955)
Q Consensus 69 D~d~~~~d~~LG~v~V~L~~l~~~~~ 94 (955)
|++.++++++||++.++|.++..-++
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCcccc
Confidence 99998889999999999999975443
No 68
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=4.4e-14 Score=139.26 Aligned_cols=102 Identities=33% Similarity=0.584 Sum_probs=90.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEEEeeeecCCCCCeeceEEEEEEeC----------------CCCe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----RQRFKTKVVRKSLSPSWEEEFSFKVED----------------LKDE 62 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~----~~k~rTkvi~~t~nP~WnE~F~F~v~~----------------~~~~ 62 (955)
|+|+|++|+||+.+ ..|.+||||++.++ ..+++|+++.++.||.|||+|.|.+.. ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 78899999999998 678999999999999999999999843 2468
Q ss_pred EEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 63 LVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 63 L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
|.|+|||.+.++++++||++.+++.++.. ......||+|.++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~---~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQ---AGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccC---CCcccceEecCCcC
Confidence 99999999998899999999999999863 22368999999875
No 69
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1.1e-13 Score=133.94 Aligned_cols=116 Identities=27% Similarity=0.497 Sum_probs=97.4
Q ss_pred CEEEEEEEEeeCCCCCC--CCCCCCcEEEEEE------CCeEEEeeeecCCC-CCeeceEEEEEEeCC-CCeEEEEEEeC
Q 002193 1 MKLVVRVIEARNIPAMD--QNGYSDPYVRLQL------GRQRFKTKVVRKSL-SPSWEEEFSFKVEDL-KDELVISVLDE 70 (955)
Q Consensus 1 m~L~V~VieArnL~~~d--~~g~sDPYv~v~l------~~~k~rTkvi~~t~-nP~WnE~F~F~v~~~-~~~L~V~V~D~ 70 (955)
|+|+|+|++|+||+..+ ..+.+||||++++ ...+.+|+++.++. ||.|||+|.|.+..+ ...|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999999888 5788999999999 34568999988775 999999999998544 35799999999
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+.. ++++||++.+++.++.. +..|++|..+.+. ....|.|.+.+.+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKGE--PLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC------ceEEEEecCCCCC--CCcceeEEEEEEE
Confidence 987 89999999999999832 4678999876543 3457999998875
No 70
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.53 E-value=5.6e-14 Score=139.66 Aligned_cols=89 Identities=37% Similarity=0.637 Sum_probs=84.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEe
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~ 81 (955)
.|+|+|++|+||+..+. +.+||||++.+++++.+|++++++.||.|||+|.|.+.++...|.++|||++.+++|++||+
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 58999999999999887 88999999999999999999999999999999999997778899999999999999999999
Q ss_pred eEeecccccc
Q 002193 82 LKIPVSRVFD 91 (955)
Q Consensus 82 v~V~L~~l~~ 91 (955)
+.+++.++..
T Consensus 82 a~i~l~~l~~ 91 (145)
T cd04038 82 AEIDLEPLVE 91 (145)
T ss_pred EEEEHHHhhh
Confidence 9999999865
No 71
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=7.6e-14 Score=134.42 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=92.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
.|+|+|++|+||+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+......|.|+|||++.++++++||
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG 81 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeee
Confidence 4899999999999999899999999999976 568999999999999999999999766789999999999999999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCC
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
++.+++.++... ....||.|.+..
T Consensus 82 ~~~~~l~~l~~~----~~~~~~~~~~~~ 105 (120)
T cd04045 82 SVEINVSDLIKK----NEDGKYVEYDDE 105 (120)
T ss_pred EEEEeHHHhhCC----CCCceEEecCCC
Confidence 999999999753 358899988654
No 72
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=1.4e-13 Score=133.41 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=98.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
+|.|+|++|+ |...+..+.+||||++.+++. ..+|+++.++.||.|||.|.|.+.+ ...|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence 5899999999 555555888999999999877 8999999999999999999999853 568999999999988999999
Q ss_pred eeEeecccccccCCCCCCc--EEEEcccCCCCCCCCcccEEEEEE
Q 002193 81 FLKIPVSRVFDADNKSLPT--AWHSLQPKNKKSKNKDCGEILLTI 123 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~--~W~~L~~~~~~~~~~~~G~I~Lsl 123 (955)
++.++|.++...+.+.... .|++|..... ......|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENK-GSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCC-CcceeeeeEEEEe
Confidence 9999999997654444433 5888885442 1345689998875
No 73
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=1e-13 Score=132.01 Aligned_cols=112 Identities=34% Similarity=0.544 Sum_probs=95.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~-~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG 80 (955)
|+|+|++|+||+..+..+.+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 589999999999999888999999999965 45899999999999999999999954 5678999999999988999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEE
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~L 121 (955)
++.+++.++.. +.....|++|.++.+ ...|.|.|
T Consensus 81 ~~~~~l~~l~~---~~~~~~~~~L~~~g~----~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEP---EETTELTLPLDGQGG----GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCC---CCcEEEEEECcCCCC----ccCceEEc
Confidence 99999999854 234689999987654 34566643
No 74
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=2.1e-13 Score=136.42 Aligned_cols=118 Identities=14% Similarity=0.266 Sum_probs=95.8
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCeeceEEEEEEeCC---------CCeEEEE
Q 002193 3 LVVRVIEARN--IPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---------KDELVIS 66 (955)
Q Consensus 3 L~V~VieArn--L~~~d~~g~sDPYv~v~l-----~~~k~rTkvi~~t~nP~WnE~F~F~v~~~---------~~~L~V~ 66 (955)
..++|..|+| |+..+.++.+||||++.+ ..++.+|+++++|+||+|||+|.|.+... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566777777 778888889999999987 24689999999999999999999999543 3579999
Q ss_pred EEeCCCC-CCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 67 VLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 67 V~D~d~~-~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
|||++.+ .+|++||++.++|..+.... ....|++|.... ....|+|++.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~~~----k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC---EIHESVDLMDGR----KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC---cceEEEEhhhCC----CCcCCEEEEEEEecC
Confidence 9999986 57999999999999985432 346699987432 256899999998763
No 75
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.51 E-value=8.1e-14 Score=139.48 Aligned_cols=96 Identities=40% Similarity=0.677 Sum_probs=84.0
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeeecCCCCCeeceE
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----------------------------QRFKTKVVRKSLSPSWEEE 51 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----------------------------~k~rTkvi~~t~nP~WnE~ 51 (955)
|.|.|+|++|+||+++|.+|.+||||++.++. ..++|+++.++.||.|||+
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 47999999999999999999999999999853 2378999999999999999
Q ss_pred EEEEEeC-CCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 52 FSFKVED-LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 52 F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
|.|.+.. ....|.|+|||++ +++||++.+++.++.. ...+.||+|
T Consensus 108 F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~----~~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS----CGLDSWFKL 153 (153)
T ss_pred EEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC----CCCCCeEeC
Confidence 9999954 3578999999998 7899999999999862 135899987
No 76
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.50 E-value=1.1e-13 Score=140.35 Aligned_cols=102 Identities=31% Similarity=0.507 Sum_probs=87.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEe---C-CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVE---D-LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~---~-~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++.+..+.+||||++.+. ..+++|++++++.||.|||+|.|.+. + ....|.|+|||++.
T Consensus 28 ~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred eEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 599999999999999989999999999883 35789999999999999999999862 2 23579999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
++++++||++.+++.++.... ..+.|+.|.+
T Consensus 108 ~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~~ 138 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKSYG---QAVDWMDSTG 138 (162)
T ss_pred CCCCceEEEEEEeCCccccCC---CccccccCCh
Confidence 889999999999999985422 3578888864
No 77
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.50 E-value=3.5e-14 Score=139.64 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=84.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~ 73 (955)
+|.|+|++|+||++.+..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.++. ....|.|+|||+|.+
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 6999999999999999899999999999942 25789999999999999999999943 356899999999999
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEcccC
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~ 107 (955)
+++++||++.++.... +.....|..+...
T Consensus 96 ~~~~~iG~v~lg~~~~-----g~~~~hW~~ml~~ 124 (136)
T cd08406 96 GKTPNVGHVIIGPAAS-----GMGLSHWNQMLAS 124 (136)
T ss_pred CCCCeeEEEEECCCCC-----ChhHHHHHHHHHC
Confidence 9999999999977643 1224567766643
No 78
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=8.9e-15 Score=160.16 Aligned_cols=102 Identities=39% Similarity=0.652 Sum_probs=91.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEE--eCCCCeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV--EDLKDELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v--~~~~~~L~V~V~D~d~~~ 74 (955)
.|+|+|.+|+||.++|.||.+||||++.+- ..+++|++++.++||+|||+|.|.+ .+.++.|.|+|||+|+.+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 589999999999999999999999999993 3568999999999999999999999 455689999999999999
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcccC
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~ 107 (955)
+++|+|...+.+++|... ..+.||.|...
T Consensus 261 RNDFMGslSFgisEl~K~----p~~GWyKlLsq 289 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKA----PVDGWYKLLSQ 289 (683)
T ss_pred cccccceecccHHHHhhc----chhhHHHHhhh
Confidence 999999999999999653 36899999854
No 79
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.49 E-value=6.1e-14 Score=137.22 Aligned_cols=103 Identities=34% Similarity=0.581 Sum_probs=87.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
.+|.|+|++|+||++.+..|.+||||++.+.+ .+++|+++.++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 13 ~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~ 92 (133)
T cd08384 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI 92 (133)
T ss_pred CEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC
Confidence 37999999999999999999999999999952 46899999999999999999999843 24689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
.+++++||++.+++... +.....|+++....
T Consensus 93 ~~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~~ 123 (133)
T cd08384 93 GKSNDYIGGLQLGINAK-----GERLRHWLDCLKNP 123 (133)
T ss_pred CCCccEEEEEEEecCCC-----CchHHHHHHHHhCC
Confidence 88999999999999752 22357899887543
No 80
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.49 E-value=5.7e-14 Score=138.16 Aligned_cols=103 Identities=29% Similarity=0.479 Sum_probs=87.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
++|.|+|++|+||+..+.+|.+||||++.+.. .+.+|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 57999999999999999999999999999842 25789999999999999999999842 34679999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
++++++||++.+++... ......|++|....
T Consensus 95 ~~~~~~iG~~~~~~~~~-----~~~~~~w~~l~~~~ 125 (136)
T cd08404 95 VTKNEVIGRLVLGPKAS-----GSGGHHWKEVCNPP 125 (136)
T ss_pred CCCCccEEEEEECCcCC-----CchHHHHHHHHhCC
Confidence 99999999999999872 12357899887544
No 81
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.49 E-value=1.3e-13 Score=133.82 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=79.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEe--CCCCeEEEEEEeCCCCCCCcee
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYFNDDFV 79 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~--~~~~~L~V~V~D~d~~~~d~~L 79 (955)
+|+|+|++|+||+. +..+.+||||+|.+++++++|++++++.||.|||+|.|... +....|.|+|||++.+++|++|
T Consensus 29 ~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~I 107 (127)
T cd04032 29 TLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLL 107 (127)
T ss_pred EEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCee
Confidence 69999999999984 66788999999999999999999999999999999999852 3467999999999999999999
Q ss_pred EeeEeeccccc
Q 002193 80 GFLKIPVSRVF 90 (955)
Q Consensus 80 G~v~V~L~~l~ 90 (955)
|++.++|....
T Consensus 108 G~~~i~l~~~~ 118 (127)
T cd04032 108 GTCSVVPEAGV 118 (127)
T ss_pred EEEEEEecCCc
Confidence 99999998764
No 82
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.47 E-value=2.7e-13 Score=133.49 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=76.5
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCC
Q 002193 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~--~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (955)
+|.|.|++|+||++++. .+.+||||++++.. .+++|++++++.||+|||.|.|.++. ....|.|+|||+|
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 69999999999999983 35599999999853 35789999999999999999999943 2468999999999
Q ss_pred CCCCCceeEeeEeeccc
Q 002193 72 KYFNDDFVGFLKIPVSR 88 (955)
Q Consensus 72 ~~~~d~~LG~v~V~L~~ 88 (955)
.++++++||++.+++..
T Consensus 96 ~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 96 SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCcCcceeceEEecCcC
Confidence 99999999999999865
No 83
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.47 E-value=2.9e-13 Score=132.06 Aligned_cols=102 Identities=40% Similarity=0.658 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeC--CCCeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~~ 74 (955)
+|+|+|++|+||+..+..+.+||||++.+. ...++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~ 93 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCC
Confidence 689999999999999888999999999995 367999999999999999999999843 3578999999999888
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcccC
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~ 107 (955)
++++||++.+++.++... ....||+|...
T Consensus 94 ~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 94 RNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred CcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 999999999999998642 46899999854
No 84
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=4e-13 Score=130.11 Aligned_cols=88 Identities=32% Similarity=0.535 Sum_probs=79.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeeceEEEEEEe-CCCCeEEEEEEeCCCCCCCcee
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFV 79 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k--~rTkvi~~t~nP~WnE~F~F~v~-~~~~~L~V~V~D~d~~~~d~~L 79 (955)
|+|.|++|+||+..+..|.+||||++.+++.+ .+|++++++.||.|||+|.|.+. +....|.|+|||++.++++++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999999999999999998765 57888899999999999999984 4457899999999998899999
Q ss_pred EeeEeeccccc
Q 002193 80 GFLKIPVSRVF 90 (955)
Q Consensus 80 G~v~V~L~~l~ 90 (955)
|++.+++.+..
T Consensus 82 G~~~i~l~~~~ 92 (124)
T cd04037 82 GETVIDLEDRF 92 (124)
T ss_pred EEEEEeecccc
Confidence 99999998864
No 85
>PLN03008 Phospholipase D delta
Probab=99.45 E-value=5.1e-13 Score=160.22 Aligned_cols=107 Identities=24% Similarity=0.415 Sum_probs=91.8
Q ss_pred CCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCC
Q 002193 20 GYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (955)
Q Consensus 20 g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~ 98 (955)
+++||||+|.+++. ..||+++.++.||+|||+|.|.+.++...|.++|||+|.++ +++||++.||+.++..+ ...
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G---e~v 150 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG---ERI 150 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCC---Cce
Confidence 46799999999876 46999999999999999999999777789999999999986 58999999999998653 336
Q ss_pred cEEEEcccCCCCCCCCcccEEEEEEEEeeCCCC
Q 002193 99 TAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (955)
Q Consensus 99 ~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~~ 131 (955)
+.|++|....++. .+..|+|+|++.|.+...+
T Consensus 151 d~Wl~Ll~~~~kp-~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 151 SGWFPVLGASGKP-PKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEccccCCCC-CCCCcEEEEEEEEEEcccc
Confidence 8999999876654 3567999999999987554
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.45 E-value=4.9e-13 Score=131.47 Aligned_cols=102 Identities=32% Similarity=0.532 Sum_probs=85.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeCC---CCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~ 72 (955)
.+|+|+|++|+||+.++..|.+||||++.++. .+++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 37999999999999999999999999999842 357899999999999999999998432 3479999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~ 107 (955)
++++++||++.+++.... .....|+++...
T Consensus 95 ~~~~~~iG~~~i~~~~~~-----~~~~~W~~~~~~ 124 (136)
T cd08402 95 IGKNDPIGKVVLGCNATG-----AELRHWSDMLAS 124 (136)
T ss_pred CCCCceeEEEEECCccCC-----hHHHHHHHHHhC
Confidence 999999999999997641 124667776643
No 87
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.45 E-value=5.2e-13 Score=131.29 Aligned_cols=103 Identities=31% Similarity=0.559 Sum_probs=85.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCeeceEEEEEEe--C-CCCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVE--D-LKDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~--~---~k~rTkvi~~t~nP~WnE~F~F~v~--~-~~~~L~V~V~D~d~ 72 (955)
++|.|+|++|+||+..+..|.+||||++.+. + .+++|+++.++.||.|||+|.|.+. + ....|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 3799999999999999999999999999983 2 3578999999999999999999983 2 24689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
++++++||++.+++... +.....|+++....
T Consensus 95 ~~~~~~lG~~~i~~~~~-----~~~~~~w~~~~~~~ 125 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG-----GLELKHWKDMLSKP 125 (136)
T ss_pred CCCCcEeEEEEECCccC-----CchHHHHHHHHhCC
Confidence 99999999999999875 12245676666443
No 88
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.44 E-value=1.6e-13 Score=135.46 Aligned_cols=101 Identities=25% Similarity=0.442 Sum_probs=84.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~------~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~ 72 (955)
+|.|+|++|+||++.+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|.|||.+.
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~ 95 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC
Confidence 7999999999999999999999999999942 25799999999999999999999942 34689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
++++++||++.+++..... .....|+.+..
T Consensus 96 ~~~~~~iG~v~l~~~~~~~----~~~~hW~~~l~ 125 (138)
T cd08408 96 MKRKEMIGWFSLGLNSSGE----EEEEHWNEMKE 125 (138)
T ss_pred CCCCcEEEEEEECCcCCCc----hHHHHHHHHHh
Confidence 9999999999998875421 11356877764
No 89
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.44 E-value=6.9e-13 Score=125.91 Aligned_cols=100 Identities=27% Similarity=0.516 Sum_probs=85.1
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCC-CCeEEEEEEeCCCCCCCceeEeeEeecccccccCCC
Q 002193 18 QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (955)
Q Consensus 18 ~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~ 95 (955)
.+|.+||||++.++++ ..+|+++.++.||.|||.|.|.+.+. ...|.|.|||++.+ ++++||++.++|.++... .
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~--~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDA--T 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhh--h
Confidence 4788999999999875 57999999999999999999999554 57799999999998 899999999999998642 2
Q ss_pred CCCcEEEEcccCCCCCCCCcccEEEEEEEEee
Q 002193 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (955)
Q Consensus 96 ~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~ 127 (955)
.....||+|.+ ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~-------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG-------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC-------CCCCEEEEEEEEec
Confidence 23579999985 23699999999975
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.42 E-value=3.1e-13 Score=132.87 Aligned_cols=103 Identities=30% Similarity=0.467 Sum_probs=84.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC--C-CCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~~ 73 (955)
+|+|+|++|+||+..+.+|.+||||++++.. .+++|++++++.||.|||+|.|.+.. . ...|.|+|||++..
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~ 94 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 6899999999999999999999999999832 35799999999999999999999832 2 34799999999998
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
+++++||++.+...... ......|+.|....
T Consensus 95 ~~~~~iG~~~l~~~~~~----~~~~~~W~~l~~~~ 125 (135)
T cd08410 95 SSNDFIGRIVIGQYSSG----PSETNHWRRMLNSQ 125 (135)
T ss_pred CCCcEEEEEEEcCccCC----chHHHHHHHHHhCC
Confidence 99999999987654431 11247788887554
No 91
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.42 E-value=9.2e-13 Score=128.45 Aligned_cols=100 Identities=18% Similarity=0.310 Sum_probs=80.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCC-CCeeceEEEEEEeC--CCCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSL-SPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~-nP~WnE~F~F~v~~--~~~~L~V~V~D~d~~ 73 (955)
+|+|.|++|+||++....+..||||+|.+. -.+++|++++++. ||.|||+|.|++.. ....|.|+|||++..
T Consensus 15 rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~ 94 (135)
T cd08692 15 RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSV 94 (135)
T ss_pred eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCC
Confidence 699999999999998666778999999983 2468999999995 69999999999943 345788999999988
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
+++++||++.++...... .....|.+..
T Consensus 95 ~~n~~IG~v~lG~~~~~~----~~~~hW~~m~ 122 (135)
T cd08692 95 RRKHFLGQVWISSDSSSS----EAVEQWKDTI 122 (135)
T ss_pred cCCceEEEEEECCccCCc----hhhhhHHHHH
Confidence 899999999999876421 1135666554
No 92
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.42 E-value=7.1e-13 Score=127.49 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=83.8
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeceEEEEEE-eCCCCeEEEEEEeCCC----C
Q 002193 6 RVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDK----Y 73 (955)
Q Consensus 6 ~VieArnL~~~d~~g~sDPYv~v~l~~~-------k~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~----~ 73 (955)
-.++|++|+..+..|.+||||++.+.+. .++|++++++.||.|||+|.|.+ .+....|.++|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3589999999999999999999999654 48999999999999999999987 3455689999999997 7
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEcc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~ 105 (955)
+++++||++.+++.++.... ....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEcc
Confidence 89999999999999997533 356788884
No 93
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.41 E-value=1.6e-12 Score=127.45 Aligned_cols=103 Identities=29% Similarity=0.550 Sum_probs=85.0
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeC--C-CCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~ 72 (955)
++|+|+|++|++|++.+..|.+||||++.+.. .+++|+++.++.||.|||+|.|.+.. . ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 47999999999999999999999999999842 35789999999999999999999832 2 2469999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
++++++||++.+++... +.....|+++....
T Consensus 94 ~~~~~~IG~~~l~~~~~-----~~~~~~w~~~~~~~ 124 (134)
T cd08403 94 VGHNELIGVCRVGPNAD-----GQGREHWNEMLANP 124 (134)
T ss_pred CCCCceeEEEEECCCCC-----CchHHHHHHHHHCC
Confidence 99999999999997632 12246787776443
No 94
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.41 E-value=4e-13 Score=131.18 Aligned_cols=102 Identities=32% Similarity=0.534 Sum_probs=88.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeCC---CCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~ 73 (955)
+|.|+|++|+||+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... ...|.|+|||.+.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 7999999999999999889999999999854 257999999999999999999999443 47899999999988
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
+++++||++.+++.+ . +...+.|++|....
T Consensus 95 ~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 899999999999988 2 22368899998654
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.38 E-value=7.9e-13 Score=130.34 Aligned_cols=101 Identities=28% Similarity=0.410 Sum_probs=82.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEe--CC-CCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE--DL-KDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~--~~-~~~L~V~V~D~d~~ 73 (955)
+|.|+|++|+||++.+ .+.+||||++.+.. .+++|++++++.||.|||+|.|.++ +. ...|.|+|||.+..
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 6999999999999998 78899999999853 3678999999999999999999993 22 36899999999988
Q ss_pred CCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
+++++||++.++...... +.....|..+..
T Consensus 95 ~~~~~lG~v~ig~~~~~~---~~~~~hW~~~~~ 124 (137)
T cd08409 95 RKSKLLGRVVLGPFMYAR---GKELEHWNDMLS 124 (137)
T ss_pred CCcceEEEEEECCcccCC---ChHHHHHHHHHh
Confidence 999999999998654422 112456766654
No 96
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.37 E-value=4.2e-12 Score=122.57 Aligned_cols=89 Identities=36% Similarity=0.671 Sum_probs=78.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEE-eC---CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v-~~---~~~~L~V~V~D~d~ 72 (955)
+|+|+|++|+||+..+..+.+||||++.+. ....+|+++.++.||.|||.|.|.. .. ....|.|+|||++.
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 799999999999999988999999999983 2468999999999999999999974 22 24689999999998
Q ss_pred CCCCceeEeeEeecccccc
Q 002193 73 YFNDDFVGFLKIPVSRVFD 91 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~ 91 (955)
+ .+++||++.+++.++..
T Consensus 96 ~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 96 F-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred c-CCeeEEEEEEEcccCCC
Confidence 7 89999999999999864
No 97
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.34 E-value=5.5e-12 Score=119.93 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=69.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeC-------
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE------- 70 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~------- 70 (955)
|.|+|.+|+||+ +.+||||++.++. .+.+|+++.+++||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 689999999995 4599999999853 46999999999999999999999964 67999999998
Q ss_pred CCCCCCceeEeeEeeccc
Q 002193 71 DKYFNDDFVGFLKIPVSR 88 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~ 88 (955)
|..+.|+++|.+.+.|..
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 466789999998888754
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.5e-12 Score=145.81 Aligned_cols=122 Identities=32% Similarity=0.557 Sum_probs=106.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCC--------
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~-------- 73 (955)
+++++|+.|.+|.++|..|.+||||.+++++.++||+++...+||+|||.|+|...+....+.|.|||.|.-
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999988888999999999852
Q ss_pred ---CCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCC
Q 002193 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (955)
Q Consensus 74 ---~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~ 130 (955)
..|+|||+..|.+..+.- ..+.||.|..+..+ ....|.|+|.|...-...
T Consensus 376 l~resddflgqtvievrtlsg-----emdvwynlekrtdk--savsgairlhisveikge 428 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLSG-----EMDVWYNLEKRTDK--SAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred hhhcccccccceeEEEEeccc-----chhhhcchhhccch--hhccceEEEEEEEEEcCc
Confidence 368999999999888731 25889999988766 457899998888765533
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.32 E-value=4.6e-12 Score=146.58 Aligned_cols=123 Identities=28% Similarity=0.452 Sum_probs=109.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
.|+|+|.+|+||++.+..|.+||||.|.++.+ ..||.++.+++.|.|.|+|.|.++..-..|.+.|||+| +++|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence 48999999999999999999999999999865 69999999999999999999999888889999999999 79999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCC
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~ 130 (955)
.+.|.-.++..- ...+.|+.|++.+.. ..++|+|||++.+.....
T Consensus 85 Kvai~re~l~~~---~~~d~W~~L~~VD~d--sEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 85 KVAIKREDLHMY---PGKDTWFSLQPVDPD--SEVQGKVHLELALTEAIQ 129 (800)
T ss_pred eeeeeHHHHhhC---CCCccceeccccCCC--hhhceeEEEEEEeccccC
Confidence 999998888542 247899999987654 468999999999986544
No 100
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.31 E-value=4.3e-12 Score=165.00 Aligned_cols=115 Identities=25% Similarity=0.435 Sum_probs=97.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCC--CeEEEEEEeCCCCCCCce
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLK--DELVISVLDEDKYFNDDF 78 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~--~~L~V~V~D~d~~~~d~~ 78 (955)
.|+|+|++|+||. +..|.+||||+++++++ +.+|++++++.||.|||+|.|.+++++ ..|+++|||+|.|++| .
T Consensus 1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd-~ 2057 (2102)
T PLN03200 1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS-S 2057 (2102)
T ss_pred ceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC-C
Confidence 5899999999998 55789999999999965 889999999999999999999885544 6799999999998555 9
Q ss_pred eEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccE---EEEEEEEee
Q 002193 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGE---ILLTISFSH 127 (955)
Q Consensus 79 LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~---I~Lsl~~~~ 127 (955)
+|++.|++.++..+. ....||+|.++.+ ..|+ |++.+.|.+
T Consensus 2058 ~G~~~i~l~~vv~~~---~~~~~~~L~~~~~-----k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEG---TYSGEYSLNPESN-----KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEHHHHhcCc---eeeeeeecCcccc-----cCCCcceEEEEEEecC
Confidence 999999999997532 3688999996432 2466 999998864
No 101
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.5e-11 Score=116.30 Aligned_cols=86 Identities=22% Similarity=0.487 Sum_probs=75.2
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCe------EEEeeeecCCCCCeeceEEEEEEe-----CCCCeEEEEEEeCCC
Q 002193 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGRQ------RFKTKVVRKSLSPSWEEEFSFKVE-----DLKDELVISVLDEDK 72 (955)
Q Consensus 4 ~V~VieArnL~~~d~~g~sDPYv~v~l~~~------k~rTkvi~~t~nP~WnE~F~F~v~-----~~~~~L~V~V~D~d~ 72 (955)
-+-.++|++|+..+..|.+||||++.+.+. .++|++++++.||.|| +|.|.+. +....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998542 5899999999999999 6888762 235799999999999
Q ss_pred CCCCceeEeeEeeccccc
Q 002193 73 YFNDDFVGFLKIPVSRVF 90 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~ 90 (955)
+++|++||++.+++.++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 999999999999999996
No 102
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.27 E-value=1.8e-11 Score=108.70 Aligned_cols=81 Identities=40% Similarity=0.741 Sum_probs=73.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCeeceEEEEEE-eCCCCeEEEEEEeCCCCCCCce
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~---~k~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~~~~d~~ 78 (955)
|+|+|++|+||+..+..+..||||++.++. ...+|+++.++.+|.|||+|.|.+ .+....|.|+|||.+..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 679999999999999999999997 4444569999999999888999
Q ss_pred eEeeE
Q 002193 79 VGFLK 83 (955)
Q Consensus 79 LG~v~ 83 (955)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 103
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.10 E-value=6.8e-10 Score=100.18 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=86.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCeeceEEEEEEeC-CCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~-~k~rTkvi~~t~nP~WnE~F~F~v~~-~~~~L~V~V~D~d~~~~d~~LG 80 (955)
|.|+|++|++|......+..||||.+.+.. ...+|.++.++.||.|||.|.|.+.. ....|.++||+.+....+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998877777899999999987 88999999999999999999999965 6678999999999877789999
Q ss_pred eeEeecccccccCCCCCCcEEEEc
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
.+.+++..+.. .......|++|
T Consensus 81 ~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhh--cCCcCcceecC
Confidence 99999999861 12335678765
No 104
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.6e-09 Score=98.42 Aligned_cols=90 Identities=44% Similarity=0.790 Sum_probs=80.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeeeecCCCCCeeceEEEEEEeCC-CCeEEEEEEeCCCCCCCc
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ---RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDD 77 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~---k~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D~d~~~~d~ 77 (955)
+|.|+|++|++|......+..+|||++.+... ..+|+++.++.||.|||+|.|.+... ...|.|+|||.+....+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 47899999999998877678999999999864 79999999999999999999999665 789999999999877789
Q ss_pred eeEeeEeecccccc
Q 002193 78 FVGFLKIPVSRVFD 91 (955)
Q Consensus 78 ~LG~v~V~L~~l~~ 91 (955)
++|.+.+++.++..
T Consensus 81 ~~G~~~~~l~~~~~ 94 (101)
T smart00239 81 FIGQVTIPLSDLLL 94 (101)
T ss_pred eeEEEEEEHHHccc
Confidence 99999999988754
No 105
>PLN02223 phosphoinositide phospholipase C
Probab=98.98 E-value=5.2e-09 Score=121.82 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=91.2
Q ss_pred EEEEEEEEeeCCCCC-----CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeCCC-CeEEEEEEeC
Q 002193 2 KLVVRVIEARNIPAM-----DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (955)
Q Consensus 2 ~L~V~VieArnL~~~-----d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~ 70 (955)
+|+|+|+.|.+++.. +.....||||+|.+. ..+++|++..++.||+|||+|.|.+..++ ..|+|+|+|+
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~ 489 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDY 489 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEec
Confidence 689999999987521 223458999999994 24567887778999999999999995444 5799999999
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
|....++|+|+..+|+..+.. +.++++|..+.+..- ..-+|.+++.+
T Consensus 490 D~~~~ddfiGQ~~LPv~~Lr~------GyR~VpL~~~~g~~l--~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EVSTADAFCGQTCLPVSELIE------GIRAVPLYDERGKAC--SSTMLLTRFKW 536 (537)
T ss_pred CCCCCCcEEEEEecchHHhcC------CceeEeccCCCcCCC--CCceEEEEEEe
Confidence 988889999999999999854 578899987766432 33567777665
No 106
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.92 E-value=6.5e-09 Score=101.52 Aligned_cols=89 Identities=33% Similarity=0.446 Sum_probs=76.3
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eEEEeeeecCCCC--CeeceEEEEEEeC---------------
Q 002193 3 LVVRVIEARNIPAMD--QNG--YSDPYVRLQLGR---QRFKTKVVRKSLS--PSWEEEFSFKVED--------------- 58 (955)
Q Consensus 3 L~V~VieArnL~~~d--~~g--~sDPYv~v~l~~---~k~rTkvi~~t~n--P~WnE~F~F~v~~--------------- 58 (955)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.|..+++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 356 499999999964 5799999999999 9999999998732
Q ss_pred ---------CCCeEEEEEEeCCCCCCCceeEeeEeecccccc
Q 002193 59 ---------LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFD 91 (955)
Q Consensus 59 ---------~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~ 91 (955)
.+..|.++|||.|.+++|++||++.++|..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 146899999999999999999999999998854
No 107
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.92 E-value=3.5e-10 Score=130.67 Aligned_cols=121 Identities=32% Similarity=0.631 Sum_probs=99.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------e------------------EEEeeeecCCCCCeeceE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------Q------------------RFKTKVVRKSLSPSWEEE 51 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~-------------~------------------k~rTkvi~~t~nP~WnE~ 51 (955)
|.|.+.+|+||.+++.+|.+|||+.+.+.. + .+-|+|+++|+||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 345677899999999999999999987620 0 146889999999999999
Q ss_pred EEEEEeCC-CCeEEEEEEeCCC---------------------------------CC---CCceeEeeEeecccccccCC
Q 002193 52 FSFKVEDL-KDELVISVLDEDK---------------------------------YF---NDDFVGFLKIPVSRVFDADN 94 (955)
Q Consensus 52 F~F~v~~~-~~~L~V~V~D~d~---------------------------------~~---~d~~LG~v~V~L~~l~~~~~ 94 (955)
|.|.+++. ...+++-+||+|- .+ .|+|||.+.||+.++...
T Consensus 196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-- 273 (1103)
T KOG1328|consen 196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-- 273 (1103)
T ss_pred eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc--
Confidence 99999665 4689999999985 11 388999999999998532
Q ss_pred CCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCC
Q 002193 95 KSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (955)
Q Consensus 95 ~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~ 129 (955)
..++||+|++++.+ ++++|.++|.++++...
T Consensus 274 --Gld~WFkLepRS~~--S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 274 --GLDQWFKLEPRSDK--SKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred --hHHHHhccCccccc--ccccceEEEEEEEeeec
Confidence 36899999999876 56899999999998763
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=98.87 E-value=2.2e-08 Score=119.05 Aligned_cols=116 Identities=27% Similarity=0.328 Sum_probs=89.2
Q ss_pred EEEEEEEEeeCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeCCC-CeEEEEEEe
Q 002193 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (955)
Q Consensus 2 ~L~V~VieArnL~~~------d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D 69 (955)
+|+|+|+.|.+|+.. +.....||||+|.+- ..+.+|+++.++.||.|||+|.|.+..++ ..|.|+|||
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D 550 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVRE 550 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEe
Confidence 689999999987532 112335999999983 35689999999999999999999985443 578999999
Q ss_pred CCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 70 ~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+|..+.++++|+..+|+..+.. +.+|++|..+.+... ..-.|.+++.+
T Consensus 551 ~D~~~~ddfiGq~~lPv~~Lr~------GyR~VpL~~~~G~~l--~~a~Llv~f~~ 598 (599)
T PLN02952 551 YDMSEKDDFGGQTCLPVSELRP------GIRSVPLHDKKGEKL--KNVRLLMRFIF 598 (599)
T ss_pred cCCCCCCCeEEEEEcchhHhcC------CceeEeCcCCCCCCC--CCEEEEEEEEe
Confidence 9988889999999999999854 567999987765422 22345555443
No 109
>PLN02270 phospholipase D alpha
Probab=98.85 E-value=2.8e-08 Score=120.12 Aligned_cols=125 Identities=18% Similarity=0.378 Sum_probs=102.6
Q ss_pred EEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeecCC-CCCeeceEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMD------------------QNGYSDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKD 61 (955)
Q Consensus 2 ~L~V~VieArnL~~~d------------------~~g~sDPYv~v~l~~~k-~rTkvi~~t-~nP~WnE~F~F~v~~~~~ 61 (955)
+|.|+|++|++|+..+ ..+++||||.|.+++.+ .||+++.+. .||.|||.|.+.+.....
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~ 88 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMAS 88 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcc
Confidence 5899999999998521 12568999999998765 799999884 699999999999977778
Q ss_pred eEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCCC
Q 002193 62 ELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (955)
Q Consensus 62 ~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~~ 131 (955)
.+.++|.|.|.++. .+||.+.||+.++..++ ..+.||++....++.. +...+|+++++|.+...+
T Consensus 89 ~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~-~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 89 NIIFTVKDDNPIGA-TLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPI-HGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred eEEEEEecCCccCc-eEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcC-CCCCEEEEEEEEEEcccC
Confidence 99999999998764 59999999999997643 3789999998776543 334599999999986443
No 110
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.78 E-value=4.4e-08 Score=116.28 Aligned_cols=116 Identities=24% Similarity=0.290 Sum_probs=91.2
Q ss_pred EEEEEEEEeeCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeCC-CCeEEEEEEe
Q 002193 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLD 69 (955)
Q Consensus 2 ~L~V~VieArnL~~~------d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~~-~~~L~V~V~D 69 (955)
+|.|+|+.|.+++.. +.....||||+|.+- ..+.+|++..++.||.|||+|.|.+.-+ -..|+|.|+|
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d 549 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHE 549 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEE
Confidence 699999999987421 223347999999983 3457888888899999999999998444 3689999999
Q ss_pred CCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 70 ~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+|...+++|+|+..+|+..|.. +.+.++|..+.+..- ..-.|.+++.+
T Consensus 550 ~d~~~~ddfiGQ~~lPv~~Lr~------GyR~V~L~~~~G~~l--~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDINEKDDFGGQTCLPVSEIRQ------GIHAVPLFNRKGVKY--SSTRLLMRFEF 597 (598)
T ss_pred CCCCCCCCEEEEEEcchHHhhC------ccceEeccCCCcCCC--CCCeeEEEEEe
Confidence 9988899999999999999854 567889988766431 23467777665
No 111
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.77 E-value=1.9e-08 Score=123.15 Aligned_cols=120 Identities=34% Similarity=0.531 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEE-eCCCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
|+|.+..|.||+..|.+|.+||||++.++.+ .++|+++++++||+|||+|..++ ......+.+.|+|+|.-.+++.||
T Consensus 1042 l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg 1121 (1227)
T COG5038 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLG 1121 (1227)
T ss_pred EEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccc
Confidence 7899999999999999999999999999876 69999999999999999999999 467789999999999988999999
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
.+.++|..+..+. ....-.+|.++. .....|.++....+.+.
T Consensus 1122 ~~~idL~~l~~~~---~~n~~i~ldgk~---~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1122 TAEIDLSKLEPGG---TTNSNIPLDGKT---FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred cccccHhhcCcCC---ccceeeeccCcc---eEecccEeecceecchh
Confidence 9999999985422 123335555433 12456777766665543
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3e-08 Score=115.12 Aligned_cols=87 Identities=38% Similarity=0.584 Sum_probs=76.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeC--C-CCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~--~-~~~L~V~V~D~d~~ 73 (955)
+|+|.|++|+||..++..+.+||||++++. ..+++|.+++++.||+|||+|.|.++. . ...|.|+|||+|.+
T Consensus 299 ~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~ 378 (421)
T KOG1028|consen 299 RLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTL 378 (421)
T ss_pred eEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccc
Confidence 689999999999999999999999999983 246899999999999999999998842 2 35799999999999
Q ss_pred CCCceeEeeEeeccc
Q 002193 74 FNDDFVGFLKIPVSR 88 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~ 88 (955)
+++++||++.+....
T Consensus 379 ~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 379 GSNDLIGRCILGSDS 393 (421)
T ss_pred cccceeeEEEecCCC
Confidence 999999998887664
No 113
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.72 E-value=1.2e-07 Score=112.50 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCC--CC----CCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeCCC-CeEEEEEEe
Q 002193 2 KLVVRVIEARNIP--AM----DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (955)
Q Consensus 2 ~L~V~VieArnL~--~~----d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D 69 (955)
+|+|+|+.|.+++ .. +.....||||+|.+. ..+.+|+++.++.||.|||+|.|.+.-++ ..|+|.|+|
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d 532 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHE 532 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEE
Confidence 6899999998753 21 123457999999993 35689999999999999999999984443 689999999
Q ss_pred CCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 70 ~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+|....++|+|+..+|+..|.. +.+.++|..+.+.. -..-.|.+++.+
T Consensus 533 ~D~~~~ddfigq~~lPv~~Lr~------GyR~V~L~~~~g~~--l~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDMSEKDDFGGQTCLPVWELSQ------GIRAFPLHSRKGEK--YKSVKLLVKVEF 580 (581)
T ss_pred CCCCCCCcEEEEEEcchhhhhC------ccceEEccCCCcCC--CCCeeEEEEEEe
Confidence 9988889999999999999854 57788998776642 123466666654
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=98.71 E-value=1.3e-07 Score=111.97 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=94.5
Q ss_pred CEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEC-----CeEEEeeeecCCCCCee-ceEEEEEEeCCC-CeEEEEE
Q 002193 1 MKLVVRVIEARNIPA---MD---QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSW-EEEFSFKVEDLK-DELVISV 67 (955)
Q Consensus 1 m~L~V~VieArnL~~---~d---~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~W-nE~F~F~v~~~~-~~L~V~V 67 (955)
++|+|+|+.|.+|+. .+ .....||||+|.+. ..+++|+++.++.||.| ||+|.|.+..++ ..|++.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 11 12347999999983 34579999988899999 999999994443 5899999
Q ss_pred EeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 68 LDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 68 ~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
+|+|....++++|+..+|+..|.. +.+.++|.+..+.. -...+|.+++.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~------GYR~VpL~~~~G~~--l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKS------GVRAVRLHDRAGKA--YKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhC------CeeEEEccCCCCCC--CCCeEEEEEEEEcCc
Confidence 999988889999999999999853 57789998776642 234679998888643
No 115
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.67 E-value=9.2e-08 Score=113.48 Aligned_cols=117 Identities=25% Similarity=0.385 Sum_probs=92.1
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECC-----eEEEeeee-cCCCCCeeceEEEEEEeCCC-CeEEEEEEeC
Q 002193 2 KLVVRVIEARNIPAMDQ----NGYSDPYVRLQLGR-----QRFKTKVV-RKSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~----~g~sDPYv~v~l~~-----~k~rTkvi-~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~ 70 (955)
+|+|.|+.|.++++.-. ...+||||.|++-+ .+.+|+++ .++-||.|+|+|.|++..++ .-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 49999999997754332 24589999999843 45889955 56899999999999995544 5799999999
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
|..++|+|+|+..+|+..|.. +.+-++|.++.|.. -..-.|.+++.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~------GyRhVpL~~~~G~~--~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ------GYRHVPLLSREGEA--LSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhC------ceeeeeecCCCCcc--ccceeEEEEEEEe
Confidence 999999999999999999853 56778998876642 2345677777765
No 116
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=8.9e-09 Score=111.13 Aligned_cols=158 Identities=22% Similarity=0.337 Sum_probs=122.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEE--eC--CCCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV--ED--LKDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v--~~--~~~~L~V~V~D~d~ 72 (955)
.+.+++..|++|.+++.++..|||++..+++ .+.+|++..++.||.|+|+..... .+ ....+++.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 3788999999999999999999999999864 347888899999999999876665 22 23578889999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccC--CCC-CCCCcccEEEEEEEEeeCCCCCcccCCCCCCCccccCCC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK--NKK-SKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTES 149 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~--~~~-~~~~~~G~I~Lsl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (955)
+..++++|+..+++..+..... .....|+.-... ... .....+|+|.+++.|..... .+.+..++|.++
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~-k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~-------~l~vt~iRc~~l 245 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQR-KSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP-------GLIVTIIRCSHL 245 (362)
T ss_pred cccccCcccchhhhhccChhhc-chhhhhhhccCCcccccccchhhccceeeeeccCcCCC-------ceEEEEEEeeee
Confidence 9999999999999999865433 223344433222 111 11256899999999875543 467888999999
Q ss_pred CCCCCCCCCCCCCCCCcC
Q 002193 150 PKRSFSGPSNAPSPVRVE 167 (955)
Q Consensus 150 ~~~ss~g~s~~~~~~~~~ 167 (955)
++++++|+|+++......
T Consensus 246 ~ssDsng~sDpyvS~~l~ 263 (362)
T KOG1013|consen 246 ASSDSNGYSDPYVSQRLS 263 (362)
T ss_pred eccccCCCCCccceeecC
Confidence 999999999998776554
No 117
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.60 E-value=1.9e-07 Score=114.70 Aligned_cols=121 Identities=22% Similarity=0.403 Sum_probs=100.8
Q ss_pred EEEEEEEeeCCCCCC--CCCCCCcEEEEEEC-CeEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCcee
Q 002193 3 LVVRVIEARNIPAMD--QNGYSDPYVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79 (955)
Q Consensus 3 L~V~VieArnL~~~d--~~g~sDPYv~v~l~-~~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~L 79 (955)
|.|+|.+|++|...+ .++..|||+.++.. ....+|++++++.||+|||+|.+.+....+.|.++|||.+.+.+|+.+
T Consensus 438 v~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vv 517 (1227)
T COG5038 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVV 517 (1227)
T ss_pred EEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCCccee
Confidence 679999999999888 68899999999974 345699999999999999999999988889999999999888999999
Q ss_pred EeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCC
Q 002193 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (955)
Q Consensus 80 G~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~ 130 (955)
|.+.++|..+.... .....-+.+... .+..|+|...+.|.+...
T Consensus 518 G~~~l~L~~L~~~~--~~~ne~~e~~~~-----~k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 518 GSTQLDLALLHQNP--VKKNELYEFLRN-----TKNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred eeEEechHHhhhcc--ccccceeeeecc-----CccceEEEEeeeeecccC
Confidence 99999998886532 223445555533 245799999999998743
No 118
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.60 E-value=9e-08 Score=108.37 Aligned_cols=120 Identities=30% Similarity=0.567 Sum_probs=100.3
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECCeEEEeeeecCCCCCeec-eEEEEEEeCC---CCeEEEEEEeCCCCCCC
Q 002193 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGRQRFKTKVVRKSLSPSWE-EEFSFKVEDL---KDELVISVLDEDKYFND 76 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~-g~sDPYv~v~l~~~k~rTkvi~~t~nP~Wn-E~F~F~v~~~---~~~L~V~V~D~d~~~~d 76 (955)
+|.|+|..||+||.+|.. ...|.||.+.+++..++|.|..+++||.|| +.|.|.|++. ++.|.+.+.|+|.++.+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysan 83 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSAN 83 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccc
Confidence 588999999999999975 458999999999999999999999999999 6799999543 57899999999999999
Q ss_pred ceeEeeEeecccccccCC-------CCCCcEEEEcccCCCCCCCCcccEEEEEEEE
Q 002193 77 DFVGFLKIPVSRVFDADN-------KSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 77 ~~LG~v~V~L~~l~~~~~-------~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
+-||.+.|.+..+...+. +.....|+++.+.-+ ..+|+|.+-+..
T Consensus 84 daigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih----girgeinvivkv 135 (1169)
T KOG1031|consen 84 DAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH----GIRGEINVIVKV 135 (1169)
T ss_pred cccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc----cccceeEEEEEE
Confidence 999999999998763221 233468999987653 467998876643
No 119
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.56 E-value=2.3e-07 Score=85.92 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=71.6
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCce
Q 002193 3 LVVRVIEARNIPAMD---QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 3 L~V~VieArnL~~~d---~~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~ 78 (955)
|+|+|..|+|+.-.+ ..+.+||||.+.++.. +.||++ +.||.|||+|.|+++ ....+.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 689999999997777 5677999999999865 889988 479999999999994 57799999999976 55668
Q ss_pred eEeeEeecccccc
Q 002193 79 VGFLKIPVSRVFD 91 (955)
Q Consensus 79 LG~v~V~L~~l~~ 91 (955)
+|..-+.+.++.+
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 8998888888864
No 120
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.55 E-value=2.4e-08 Score=115.88 Aligned_cols=89 Identities=37% Similarity=0.565 Sum_probs=79.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeecCCCCCeeceEEEEEEeCC-----CCeEEEEEEe
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVEDL-----KDELVISVLD 69 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~-------k~rTkvi~~t~nP~WnE~F~F~v~~~-----~~~L~V~V~D 69 (955)
+|.|.|+-|+++.+.|.||.+||||+|.+++. .++|+|+.+++||+|+|.|+|.|+.. ..-|.++|+|
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMD 1027 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMD 1027 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeec
Confidence 47788999999999999999999999999864 48999999999999999999999433 2469999999
Q ss_pred CCCCCCCceeEeeEeeccccc
Q 002193 70 EDKYFNDDFVGFLKIPVSRVF 90 (955)
Q Consensus 70 ~d~~~~d~~LG~v~V~L~~l~ 90 (955)
+|-++.++|-|++-+.|+++.
T Consensus 1028 HD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1028 HDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cceecccccchHHHHhhCCCC
Confidence 999999999999999998873
No 121
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.48 E-value=6.2e-07 Score=105.41 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=91.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeeecCCCCCeec-eEEEEEEeCC-CCeEEEEEEeCCC
Q 002193 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWE-EEFSFKVEDL-KDELVISVLDEDK 72 (955)
Q Consensus 1 m~L~V~VieArnL~~~d~~g~sDPYv~v~l~------~~k~rTkvi~~t~nP~Wn-E~F~F~v~~~-~~~L~V~V~D~d~ 72 (955)
|+|.|.|+.||.|+..+ .|.+-|||.|.+- +..++|.|..+++||+|| |.|+|.+.++ -..|++.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 78999999999999544 3456799999983 234666667789999999 9999999554 4689999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
++...|||++..|+..+.. +-+-.+|...- +..-....|++.+..-+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~------GfRsVpLkN~y--SEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKS------GFRSVPLKNGY--SEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhc------cceeeecccCc--hhhhhhhhheeeeEeccc
Confidence 9888899999999999853 34456676432 223345667777766554
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.46 E-value=2.2e-07 Score=108.59 Aligned_cols=137 Identities=30% Similarity=0.479 Sum_probs=101.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE----EEeeeecCCCCCeeceEEEEEEeCC----------------CCe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR----FKTKVVRKSLSPSWEEEFSFKVEDL----------------KDE 62 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k----~rTkvi~~t~nP~WnE~F~F~v~~~----------------~~~ 62 (955)
+.+++++++++.+.+ ++.+|||+++...+.. .+|++++++.+|.|+|.|.|.+... ...
T Consensus 133 ~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ 211 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLE 211 (800)
T ss_pred chhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceee
Confidence 345567777777766 4459999999986433 6999999999999999999998322 347
Q ss_pred EEEEEEe-CCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCC---CCCCcccEEEEEEEEeeCCCCCcccCCC
Q 002193 63 LVISVLD-EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKK---SKNKDCGEILLTISFSHNTSSADFNINS 138 (955)
Q Consensus 63 L~V~V~D-~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~---~~~~~~G~I~Lsl~~~~~~~~~~~~~~~ 138 (955)
|+|.+|+ .+....++|+|++.+|+..+.. ......||.|+++... ......|.++|.+.|... ..+++
T Consensus 212 irv~lW~~~~~~~~~~FlGevrv~v~~~~~---~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D-----~Vlps 283 (800)
T KOG2059|consen 212 IRVDLWNDLNLVINDVFLGEVRVPVDVLRQ---KSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED-----HVLPS 283 (800)
T ss_pred EEEeeccchhhhhhhhhceeEEeehhhhhh---ccCccceEEEecCCCcccCCCCCCccceeeeEEeeec-----eeccH
Confidence 8999999 5566679999999999988752 2346889999987422 234567999999999743 34455
Q ss_pred CCCCccccCC
Q 002193 139 DPLDQLKTTE 148 (955)
Q Consensus 139 ~~~~~~~~~~ 148 (955)
..+.++....
T Consensus 284 ~~Y~pL~~LL 293 (800)
T KOG2059|consen 284 QYYKPLMDLL 293 (800)
T ss_pred hhhhhHHHHH
Confidence 5555544433
No 123
>PLN02352 phospholipase D epsilon
Probab=98.11 E-value=2.1e-05 Score=95.58 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=89.4
Q ss_pred EEEEEEEEeeCCCCC----CCC-CCCCcEEEEEECCeE-EEeeeecCCCCCeeceEEEEEEeCCC-CeEEEEEEeCCCCC
Q 002193 2 KLVVRVIEARNIPAM----DQN-GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~----d~~-g~sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE~F~F~v~~~~-~~L~V~V~D~d~~~ 74 (955)
+|.++|.+|+-+... +.. ...||||.|.+++.+ .|| .+..||.|+|.|.+.+.... ..+.++|.|
T Consensus 11 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----- 82 (758)
T PLN02352 11 TLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----- 82 (758)
T ss_pred ceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----
Confidence 589999999843221 111 113999999998765 577 55679999999999996555 689999988
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCCC
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~~ 131 (955)
...+||.+.||+.++..++ ...+.|+++....+++. .. .+|+++++|.+...+
T Consensus 83 ~~~~ig~~~~p~~~~~~g~--~~~~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA--SFINGFFPLIMENGKPN-PE-LKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC--cccceEEEcccCCCCCC-CC-CEEEEEEEEEEhhhC
Confidence 3679999999999997642 22689999998877643 22 699999999987554
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.09 E-value=2.7e-06 Score=99.43 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=81.6
Q ss_pred cccchhhhcccCCCCCCeeEEEEEeeEee---ecccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCcccCC
Q 002193 625 PQTNSAFQKLFGLPPEEFLINDFTCHLKR---KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSM 701 (955)
Q Consensus 625 ~~~~~~F~~lF~lp~~E~Li~~f~Cal~r---~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~~~~ 701 (955)
+.++++| ..|+|| |.|..+..|.++. +.+.+||||+|++|+||.|.... .+.+++|+..|..|++.+. -+.+
T Consensus 7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~-ss~~ 81 (671)
T KOG4347|consen 7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDD-SSLF 81 (671)
T ss_pred hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCc-cccc
Confidence 5788899 999999 9999999999988 45689999999999999999886 5899999999999999872 1112
Q ss_pred CCCeEEEEEeeCCCcCcCCCceeeccCCceEEEeccccchHHHHHHHHHH
Q 002193 702 GSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMAL 751 (955)
Q Consensus 702 g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~k~~F~sF~~rd~a~~~i~~l 751 (955)
.++. .+.+.+...+.|..+..|+..+--+...
T Consensus 82 ~~~i------------------~~~~~~~~~~~f~~~~~r~~~~~k~~~~ 113 (671)
T KOG4347|consen 82 TQLI------------------SLFTSNMVGMRFGGLTERLKLLSKLHLP 113 (671)
T ss_pred hhhh------------------HHhhcCcceEEecchhhHHHHHHHHhch
Confidence 1111 2222244679999999999887555433
No 125
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.89 E-value=6.1e-06 Score=99.93 Aligned_cols=87 Identities=29% Similarity=0.509 Sum_probs=78.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCeeceEEEEEE-eCCCCeEEEEEEeCCCCCCCce
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDKYFNDDF 78 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k--~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~~~~d~~ 78 (955)
.++|+|++|-+|.+.|.+|.+|||+++.+|++. -+..-+.+++||++++.|.+.. -+....|.+.|||+|.+.+|+.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~ 693 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK 693 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence 367999999999999999999999999999876 6777889999999999999988 3456789999999999999999
Q ss_pred eEeeEeeccc
Q 002193 79 VGFLKIPVSR 88 (955)
Q Consensus 79 LG~v~V~L~~ 88 (955)
+|+..+.|+.
T Consensus 694 iget~iDLEn 703 (1105)
T KOG1326|consen 694 IGETTIDLEN 703 (1105)
T ss_pred hhceehhhhh
Confidence 9999987754
No 126
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.74 E-value=2.4e-05 Score=95.75 Aligned_cols=102 Identities=30% Similarity=0.479 Sum_probs=85.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEE---eCC-CCeEEEEEEeCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV---EDL-KDELVISVLDEDK 72 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v---~~~-~~~L~V~V~D~d~ 72 (955)
+|.|-|.-|++|+-...+..+||||+..+.+ .+++|+++.+|.||.|||...... ... .+.|.++||..+.
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~ 1604 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG 1604 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc
Confidence 6889999999997776666799999999963 368999999999999999998884 222 4789999999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEccc
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~ 106 (955)
+..+.++|.+.|+|.++.... ....||.|..
T Consensus 1605 ~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1605 LLENVFLGGVNIPLLKVDLLK---ESVGWYNLGA 1635 (1639)
T ss_pred eeeeeeeeeeecchhhcchhh---hhcceeeccc
Confidence 999999999999999985322 2458999974
No 127
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.71 E-value=4.3e-05 Score=76.68 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=63.7
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecC----CCcccceEEecCCcch-------hhhc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSD----ISDLADVWIPLQGKLA-------QACQ 587 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~----~~~~~~~w~~l~~~~~-------~~~~ 587 (955)
.+|.|.|.|+|...+.....+.|+|||+|+..+.. .||++.|++-.-. .++..+.|++|.++.+ +.+.
T Consensus 44 ~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd-~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~ 122 (150)
T cd04019 44 GNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE-PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFA 122 (150)
T ss_pred CCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC-eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCccc
Confidence 58999999999765533469999999999987766 9999999976522 3456799999998765 5677
Q ss_pred cccccceeccC
Q 002193 588 SKLHLRIFLNN 598 (955)
Q Consensus 588 ~~~~~~~~~~~ 598 (955)
.+|||++.++.
T Consensus 123 g~l~l~i~~~~ 133 (150)
T cd04019 123 SRIHLRLCLDG 133 (150)
T ss_pred ccEEEEEEecC
Confidence 89999999873
No 128
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.60 E-value=8.3e-05 Score=71.87 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=60.2
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeec--CC-CcccceEEecCCcchhhhcccccccee
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKS--DI-SDLADVWIPLQGKLAQACQSKLHLRIF 595 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~--~~-~~~~~~w~~l~~~~~~~~~~~~~~~~~ 595 (955)
..|.|.|.|.|.+.++....|.++|||+|...+.. .||+++|+.-.. +. +...++|++|.+ +.++||++.
T Consensus 47 ~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~-~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~ 119 (126)
T cd04043 47 LNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD-LCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVS 119 (126)
T ss_pred CCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc-eEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEE
Confidence 48899999999877766789999999999766555 999999997431 12 457789999986 257899999
Q ss_pred ccCCC
Q 002193 596 LNNTK 600 (955)
Q Consensus 596 ~~~~~ 600 (955)
+++.+
T Consensus 120 ~~~~~ 124 (126)
T cd04043 120 MEGER 124 (126)
T ss_pred Eeeec
Confidence 88776
No 129
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00019 Score=83.09 Aligned_cols=118 Identities=25% Similarity=0.403 Sum_probs=92.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE-C------CeEEEeeeecCCCCCeeceEEEEEEeCC----CCeEEEEEEeC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-G------RQRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDE 70 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l-~------~~k~rTkvi~~t~nP~WnE~F~F~v~~~----~~~L~V~V~D~ 70 (955)
+++|.|+.|.+|.... .|.--||+.+.+ | +.+..|+++.++..|.+||+|.|-+... .-.|.+.|-|+
T Consensus 1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 5789999999998754 567889999998 2 2457888889999999999999998322 24799999998
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
-....|..+|.+.++|.++... .....|++|..+-+. ...|-+.|+|--.
T Consensus 1205 CFAReDRvvGl~VlqL~~va~k---GS~a~W~pLgrrihm---DeTGLtiLRILSQ 1254 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADK---GSCACWVPLGRRIHM---DETGLTILRILSQ 1254 (1283)
T ss_pred eeecccceeeeeeeehhhHhhc---CceeEeeeccccccc---cccchhHHHHhhh
Confidence 8778899999999999998642 346899999876542 3457666665433
No 130
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00013 Score=79.52 Aligned_cols=87 Identities=32% Similarity=0.489 Sum_probs=74.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeCC---CCeEEEEEEeCCCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~~---~~~L~V~V~D~d~~ 73 (955)
.|.|+++++..|...|.+|.+||||...+. ..+.+|.+.+++.+|.+|++|.|.+.+. ...+.|.|||.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 378999999999999999999999999985 2468999999999999999999999433 46899999999987
Q ss_pred CCCceeEeeEeeccc
Q 002193 74 FNDDFVGFLKIPVSR 88 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~ 88 (955)
...+++|-+......
T Consensus 314 ~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 314 KSNDSIGGSMLGGYR 328 (362)
T ss_pred cCccCCCcccccccc
Confidence 788899887665433
No 131
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.45 E-value=0.00014 Score=69.23 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=55.1
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhh
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA 585 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~ 585 (955)
..|.|.|.|+|++.+.....|.|+|||+|...+.. .||++++++-.-..++..++|++|....|+.
T Consensus 43 ~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~-~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~~ 108 (116)
T cd08376 43 LNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE-FIGRCEIDLSALPREQTHSLELELEDGEGSL 108 (116)
T ss_pred CCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC-eEEEEEEeHHHCCCCCceEEEEEccCCCcEE
Confidence 57899999999877666899999999999865555 9999999986655778999999998764443
No 132
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.20 E-value=0.00045 Score=66.24 Aligned_cols=100 Identities=22% Similarity=0.425 Sum_probs=75.4
Q ss_pred EEEEEEEeeCCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeeecCCCCCeeceEEEEEEe-----CC-
Q 002193 3 LVVRVIEARNIPAMDQ-------------NGYSDPYVRLQL----GRQRFKTKVVRKSLSPSWEEEFSFKVE-----DL- 59 (955)
Q Consensus 3 L~V~VieArnL~~~d~-------------~g~sDPYv~v~l----~~~k~rTkvi~~t~nP~WnE~F~F~v~-----~~- 59 (955)
|.|.|++|.||.+.-. .-.-|+||++.+ +++.++|+++.++--|.|+..++|.++ +.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688899988854210 112589999997 357799999999999999999999873 11
Q ss_pred ----------CCeEEEEEEeCCCC----------CCCceeEeeEeecccccccCCCCCCcEEEEc
Q 002193 60 ----------KDELVISVLDEDKY----------FNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (955)
Q Consensus 60 ----------~~~L~V~V~D~d~~----------~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L 104 (955)
...+.++||+...- .+|-.||.+.||+.+|... ......||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~--rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK--RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc--ccCccccccC
Confidence 24799999997752 3466899999999999753 3346889975
No 133
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.20 E-value=0.00049 Score=66.56 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=53.6
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeee-ecCCCcccceEEecCCcchhhhcccccc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFV-KSDISDLADVWIPLQGKLAQACQSKLHL 592 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~-~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 592 (955)
.+|.|.|.|.|+. .+.-..|.|+|||.|- |.....||++.|++. .--.++.-+.|++|.++.+-.+.-.+||
T Consensus 45 ~nP~WNe~F~f~v-~~~~~~l~~~V~d~d~-~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l 117 (121)
T cd04016 45 KNPRWNKTIQCTL-PEGVDSIYIEIFDERA-FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINL 117 (121)
T ss_pred CCCccCeEEEEEe-cCCCcEEEEEEEeCCC-CcCCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEE
Confidence 5899999999964 4444789999999997 444449999999995 3346777899999998664333334444
No 134
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.12 E-value=0.00011 Score=89.47 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=94.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEE----------eCCCCeEEEEEEeCCC
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKV----------EDLKDELVISVLDEDK 72 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v----------~~~~~~L~V~V~D~d~ 72 (955)
|+++|.+|++|.+.+..+.+|||+.+...++.+.|.++.+++||.|+++..|.- ......+.++|||.++
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr 287 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR 287 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence 567888999999999999999999999999999999999999999999998873 1224578899999999
Q ss_pred CCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 73 ~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
.+.++++|+......-... ...-.|+++.... ...|+++++..++..
T Consensus 288 ~g~~ef~gr~~~~p~V~~~----~p~lkw~p~~rg~-----~l~gd~l~a~eliq~ 334 (1105)
T KOG1326|consen 288 SGINEFKGRKKQRPYVMVQ----CPALKWVPTMRGA-----FLDGDVLIAAELIQI 334 (1105)
T ss_pred hchHHhhcccccceEEEec----CCccceEEeeccc-----ccccchhHHHHHHhh
Confidence 9999999998775544322 3467899998543 356777766655433
No 135
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=97.10 E-value=0.00069 Score=64.91 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=56.7
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhhccccccceec
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 596 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~ 596 (955)
..|.|.|.|+|++-.+....|.|+|||+|.. +.. .||++++++-.-..++..+.|++|..+ + + -.||+++-+
T Consensus 46 ~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~-~iG~~~~~l~~l~~g~~~~~~~~L~~~-~--~-g~l~~~~~~ 117 (119)
T cd04036 46 INPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD-HLGTVLFDVSKLKLGEKVRVTFSLNPQ-G--K-EELEVEFLL 117 (119)
T ss_pred CCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc-ccEEEEEEHHHCCCCCcEEEEEECCCC-C--C-ceEEEEEEe
Confidence 4799999999977665566799999999987 555 899999999776677899999999865 2 1 336666544
No 136
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=97.05 E-value=0.00074 Score=65.65 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=51.0
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccC----------cccccceeEEeeeecCCCcccceEEecCCcchh
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFN----------EATSLGHAEINFVKSDISDLADVWIPLQGKLAQ 584 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~----------~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~ 584 (955)
..|.|.|.|.|.. .++...|.|+|||+|..+. ....||+++|++.. .++.+++|++|..+..+
T Consensus 44 ~~P~Wne~f~f~~-~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~--~~~~~~~w~~L~~~~~~ 116 (127)
T cd04027 44 LNPVWNEKFHFEC-HNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRT--LSGEMDVWYNLEKRTDK 116 (127)
T ss_pred CCCccceEEEEEe-cCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHH--ccCCCCeEEECccCCCC
Confidence 4789999999954 5667899999999997653 34589999999875 56778999999976544
No 137
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=96.97 E-value=0.0011 Score=63.37 Aligned_cols=61 Identities=25% Similarity=0.452 Sum_probs=49.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~ 581 (955)
..|.|.|.|+|...+.+-..|.|+|||.|.. +.. .||+++|.+-.-......+.|++|.+.
T Consensus 50 ~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~-~~~-~iG~~~i~l~~l~~~~~~~~w~~L~~~ 110 (121)
T cd08391 50 LNPKWNEVYEAVVDEVPGQELEIELFDEDPD-KDD-FLGRLSIDLGSVEKKGFIDEWLPLEDV 110 (121)
T ss_pred CCCcccceEEEEeCCCCCCEEEEEEEecCCC-CCC-cEEEEEEEHHHhcccCccceEEECcCC
Confidence 4789999999976666678999999999986 444 899999997554455678999999864
No 138
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=96.93 E-value=0.0013 Score=63.14 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=53.2
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcch
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 583 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~ 583 (955)
..|.|.|.|.|. ++++-..|.++|||+|...+.. .||++.+.+-.-..++..+.|++|.++.+
T Consensus 44 ~nP~Wne~f~f~-v~~~~~~l~~~v~D~d~~~~~~-~iG~~~~~l~~l~~~~~~~~~~~L~~~~~ 106 (121)
T cd04042 44 LNPVWDEKFTLP-IEDVTQPLYIKVFDYDRGLTDD-FMGSAFVDLSTLELNKPTEVKLKLEDPNS 106 (121)
T ss_pred CCCccceeEEEE-ecCCCCeEEEEEEeCCCCCCCc-ceEEEEEEHHHcCCCCCeEEEEECCCCCC
Confidence 589999999994 6777889999999999976666 99999999977666788899999975543
No 139
>PLN02964 phosphatidylserine decarboxylase
Probab=96.86 E-value=0.0015 Score=79.30 Aligned_cols=82 Identities=18% Similarity=0.417 Sum_probs=68.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcE-EEEEECCeEEEeeeecCCCCCeeceEEEEEE-eCCCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPY-VRLQLGRQRFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPY-v~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
+.+++++|+ ++ ..||| +.+++|.+.++|.+.++|.||+||+...|.+ +......++.|||.+.+++++++|
T Consensus 56 ~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~ 128 (644)
T PLN02964 56 ALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVG 128 (644)
T ss_pred EEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhh
Confidence 457777776 22 36886 4556788999999999999999999999999 444456799999999999999999
Q ss_pred eeEeecccccc
Q 002193 81 FLKIPVSRVFD 91 (955)
Q Consensus 81 ~v~V~L~~l~~ 91 (955)
.+++++.++..
T Consensus 129 ~~e~~~t~f~~ 139 (644)
T PLN02964 129 YCELDLFDFVT 139 (644)
T ss_pred heeecHhhccH
Confidence 99999988864
No 140
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.83 E-value=0.0012 Score=61.96 Aligned_cols=59 Identities=20% Similarity=0.199 Sum_probs=46.9
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeec--CCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKS--DISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~--~~~~~~~~w~~l~~~ 581 (955)
.+|.|.|.|+|.+.+..-..|.|+|||+|. ...||++.|+...- ..+...+-|++|+++
T Consensus 43 ~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 43 NNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCCcccceEEEEeCCCCCCEEEEEEEECCC----CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 589999999997665345689999999998 34899999997532 234578999999875
No 141
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=96.71 E-value=0.0023 Score=62.13 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=48.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~ 581 (955)
..|.|.|.|.|+..+.--..|.|.|||+|...+.. .||++.|++-.-..+...+.|++|.+.
T Consensus 44 ~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~-~iG~v~i~l~~l~~~~~~~~W~~L~~~ 105 (126)
T cd08400 44 PNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS-EIAEVTVQLSKLQNGQETDEWYPLSSA 105 (126)
T ss_pred CCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC-eEEEEEEEHhHccCCCcccEeEEcccC
Confidence 57999999999743211147899999999866665 999999997765567778999999865
No 142
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=96.70 E-value=0.0018 Score=62.49 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=50.5
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecC---CCcccceEEecCCcc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSD---ISDLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~---~~~~~~~w~~l~~~~ 582 (955)
..|.|.|.|+|...+.....|.|+|||+|...+.. .||+++|.+-.-- .....+.|++|+++.
T Consensus 46 ~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~-~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~ 111 (128)
T cd04024 46 LNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD-YLGEFDIALEEVFADGKTGQSDKWITLKSTR 111 (128)
T ss_pred cCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC-cceEEEEEHHHhhcccccCccceeEEccCcc
Confidence 47889999999777656789999999999755555 9999999975532 345678999999773
No 143
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=96.66 E-value=0.0026 Score=64.43 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=57.6
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhhc--cccccce
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQ--SKLHLRI 594 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~--~~~~~~~ 594 (955)
.+|.|.|.|+| .+.++-..|.|+|||+|. +.. ..||.+.|+.-.-..++-.+.|++|.+..+..+. .+||++.
T Consensus 81 ~nP~WnE~F~~-~~~~~~~~l~~~V~d~d~-~~~-~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~ 155 (158)
T cd04015 81 ENPVWNESFHI-YCAHYASHVEFTVKDNDV-VGA-QLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSL 155 (158)
T ss_pred CCCccceEEEE-EccCCCCEEEEEEEeCCC-cCC-cEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEE
Confidence 48999999999 555666799999999985 554 5999999998765567788999999887666654 4566653
No 144
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.66 E-value=0.0034 Score=60.84 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=57.8
Q ss_pred HhhcccceeccccCCC--CCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhhcccccccee
Q 002193 519 QARKQKEIFEYDAMDE--PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIF 595 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~--~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~~ 595 (955)
..|.|.|.|.|+.... +...|.|+|||+|...+.. .||++.+++-.-..+...+.|++|..+.+......+|+.+-
T Consensus 37 ~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~-~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~ 114 (127)
T cd08373 37 LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR-LIGSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVS 114 (127)
T ss_pred cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCc-eEEEEEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEE
Confidence 4789999999976553 5689999999999987666 99999999866556678899999964433332346666654
No 145
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=96.54 E-value=0.0032 Score=60.99 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=49.3
Q ss_pred HhhcccceeccccCCC-----CCceeEEEEEecCCccCcccccceeEEeeeecC--CCcccceEEecCCcch
Q 002193 519 QARKQKEIFEYDAMDE-----PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSD--ISDLADVWIPLQGKLA 583 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-----~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~--~~~~~~~w~~l~~~~~ 583 (955)
.+|.|.|.|+|+.-+. +...|.++|||+|..-+. ..||.+.|..-.-. .+...+.|++|.++-+
T Consensus 42 ~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d-~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~ 112 (126)
T cd08682 42 TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD-KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG 112 (126)
T ss_pred CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC-ceeEEEEEEHHHhhccCCCcccEEEECcCCCC
Confidence 4789999999976552 457899999999975444 48999999886533 4566789999987654
No 146
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.53 E-value=0.0027 Score=61.55 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=55.4
Q ss_pred HhhcccceeccccCCCCC----ceeEEEEEecCCccCcccccceeEEeeeecC-CCcccceEEecCCc--chhhhccccc
Q 002193 519 QARKQKEIFEYDAMDEPP----SMLDVEVYDFDGPFNEATSLGHAEINFVKSD-ISDLADVWIPLQGK--LAQACQSKLH 591 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p----~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~-~~~~~~~w~~l~~~--~~~~~~~~~~ 591 (955)
..|.|.|.|.|++ .+|. ..|.++|||.|...+....||++.|....-. .++....|++|+.+ .+..+. .++
T Consensus 43 ~nP~Wne~f~f~~-~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G-~l~ 120 (127)
T cd04022 43 LNPVWNEKLVFNV-SDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRG-EIG 120 (127)
T ss_pred CCCccceEEEEEc-cCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccE-EEE
Confidence 4789999999954 4443 4799999999987633449999999986643 56888999999965 333442 566
Q ss_pred cceec
Q 002193 592 LRIFL 596 (955)
Q Consensus 592 ~~~~~ 596 (955)
|++.+
T Consensus 121 l~~~~ 125 (127)
T cd04022 121 LKVYI 125 (127)
T ss_pred EEEEE
Confidence 66554
No 147
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.51 E-value=0.0035 Score=61.23 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=53.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCC--CcccceEEecCCcchhhhccccccceec
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI--SDLADVWIPLQGKLAQACQSKLHLRIFL 596 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~--~~~~~~w~~l~~~~~~~~~~~~~~~~~~ 596 (955)
..|.|.|.|+|++. +...|.|+|||.|..-+.. .||++.|+.-.--. ++..+.|++|+. +-++||++.+
T Consensus 58 ~~P~Wne~f~~~v~--~~~~l~~~v~d~~~~~~~~-~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~l~l~~~~ 128 (132)
T cd04014 58 NSPVWNEEFTTEVH--NGRNLELTVFHDAAIGPDD-FVANCTISFEDLIQRGSGSFDLWVDLEP------QGKLHVKIEL 128 (132)
T ss_pred CCCCcceeEEEEcC--CCCEEEEEEEeCCCCCCCc-eEEEEEEEhHHhcccCCCcccEEEEccC------CcEEEEEEEE
Confidence 57999999999765 5689999999998654444 89999999754223 577899999972 2467887765
Q ss_pred c
Q 002193 597 N 597 (955)
Q Consensus 597 ~ 597 (955)
.
T Consensus 129 ~ 129 (132)
T cd04014 129 K 129 (132)
T ss_pred e
Confidence 3
No 148
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.49 E-value=0.0026 Score=61.48 Aligned_cols=59 Identities=29% Similarity=0.513 Sum_probs=49.5
Q ss_pred Hhhcccceecccc--CCCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDA--MDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~--~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|+|+. .++++ ..|.|+|||+|. +.....||.+.|+.-.-..++..+.|++|
T Consensus 60 ~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 60 RNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 5788999999975 45666 689999999997 44555999999999887778888999998
No 149
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.46 E-value=0.0026 Score=60.35 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=52.8
Q ss_pred HHhhcccceeccccCCCCC-ceeEEEEEecCCccCcccccceeEEeeeec-CCCcccceEEecCCcchhhhccccccce
Q 002193 518 MQARKQKEIFEYDAMDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKS-DISDLADVWIPLQGKLAQACQSKLHLRI 594 (955)
Q Consensus 518 ~~~~~~~e~~~f~~~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~-~~~~~~~~w~~l~~~~~~~~~~~~~~~~ 594 (955)
-.+|.|.|.|+| .+.+++ ..|.|+|||+|.. ... .||++.|++-.- ..+...+.|++|+|+- ...||++.
T Consensus 35 t~nP~Wne~f~f-~v~~~~~~~l~i~v~d~~~~-~d~-~iG~~~v~L~~l~~~~~~~~~w~~L~~~~----~G~i~~~~ 106 (111)
T cd04052 35 TNNPSWNASTEF-LVTDRRKSRVTVVVKDDRDR-HDP-VLGSVSISLNDLIDATSVGQQWFPLSGNG----QGRIRISA 106 (111)
T ss_pred CCCCccCCceEE-EecCcCCCEEEEEEEECCCC-CCC-eEEEEEecHHHHHhhhhccceeEECCCCC----CCEEEEEE
Confidence 478999999999 566766 5699999999987 555 999999996532 2345678999998721 25566653
No 150
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.44 E-value=0.0055 Score=71.87 Aligned_cols=85 Identities=26% Similarity=0.453 Sum_probs=70.3
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEC--C----eEEEeeeecCCCCCeeceEEEEEE-----eCCCCeEEEEEEeCCCCC
Q 002193 6 RVIEARNIPAMDQNGYSDPYVRLQLG--R----QRFKTKVVRKSLSPSWEEEFSFKV-----EDLKDELVISVLDEDKYF 74 (955)
Q Consensus 6 ~VieArnL~~~d~~g~sDPYv~v~l~--~----~k~rTkvi~~t~nP~WnE~F~F~v-----~~~~~~L~V~V~D~d~~~ 74 (955)
-.++|++|..+|..+++|||..+.-- . ..++|.+++++++|.|.+ |.+.. .+.+..+.+.+||++..+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 34678999999999999999988752 1 248999999999999986 44443 355688999999999988
Q ss_pred CCceeEeeEeecccccc
Q 002193 75 NDDFVGFLKIPVSRVFD 91 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~ 91 (955)
+++++|++..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 89999999999998854
No 151
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=96.43 E-value=0.0039 Score=60.17 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=48.9
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|+|+..+ .-..|.|.|||+|.-.+.. .||.+.|+.-.-..+...+.|++|..
T Consensus 45 ~~P~WnE~F~f~v~~-~~~~l~~~v~d~~~~~~~~-~iG~~~i~l~~l~~~~~~~~w~~L~~ 104 (121)
T cd08401 45 LCPFFGEDFYFEIPR-TFRHLSFYIYDRDVLRRDS-VIGKVAIKKEDLHKYYGKDTWFPLQP 104 (121)
T ss_pred CCCccCCeEEEEcCC-CCCEEEEEEEECCCCCCCc-eEEEEEEEHHHccCCCCcEeeEEEEc
Confidence 579999999997653 3579999999999865555 99999999766555677899999974
No 152
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.40 E-value=0.004 Score=60.55 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=53.9
Q ss_pred hhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeee--cCCCcccceEEecC----Ccchhhhcccc
Q 002193 520 ARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVK--SDISDLADVWIPLQ----GKLAQACQSKL 590 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~--~~~~~~~~~w~~l~----~~~~~~~~~~~ 590 (955)
+|.|-|.|.| ..+++-+.|.|+|||-|.. ....||++.|+.-. .+...++..|++|+ .+-+|+|..+.
T Consensus 42 nP~WnE~F~F-~~~~~~~~L~v~V~dkd~~--~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~~~ 115 (127)
T cd08394 42 QPCWEQDFMF-EINRLDLGLVIELWNKGLI--WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGTKD 115 (127)
T ss_pred CCceeeEEEE-EEcCCCCEEEEEEEeCCCc--CCCceEEEEEEhHHcccCCCCCCCccEecChHHhccCCeEecccC
Confidence 8999999999 6778888899999998864 33379999998765 34667889999998 45677775443
No 153
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.29 E-value=0.0045 Score=59.44 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=49.1
Q ss_pred HhhcccceeccccCCC--CCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAMDE--PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~--~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
.+|.|.|.|.|+.-++ ....|.|+|||+|...+.. .||+++|..-.-....-.+.|++|+
T Consensus 61 ~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~-~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 61 QNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHC-IIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCc-EEEEEEEeccceecCCCceEEEeCC
Confidence 4688889999974332 2468999999999977665 9999999998777777889999996
No 154
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.27 E-value=0.006 Score=57.80 Aligned_cols=65 Identities=26% Similarity=0.343 Sum_probs=52.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchh
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ 584 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~ 584 (955)
..|.|.|.|.|...+.+-..+.++|||+|..-+ ...||++++.+-.-..+...++|++|.++.++
T Consensus 43 ~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~-~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 43 LNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGK-DDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred CCCcccccEEEEeccCCCCEEEEEEEeCCCCCC-CCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 478999999997766667889999999997544 44999999998765566778999999876554
No 155
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=96.25 E-value=0.0045 Score=58.98 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=49.0
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~ 581 (955)
.+|.|.|.|.|+..++....|.|+|||+|.- . ...||+++|++-.--.++..+.|++|.++
T Consensus 45 ~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 105 (118)
T cd08681 45 QHPEWDEELRFEITEDKKPILKVAVFDDDKR-K-PDLIGDTEVDLSPALKEGEFDDWYELTLK 105 (118)
T ss_pred CCCccCceEEEEecCCCCCEEEEEEEeCCCC-C-CcceEEEEEecHHHhhcCCCCCcEEeccC
Confidence 3799999999987776667899999999974 3 44899999998753334567999999754
No 156
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.0037 Score=69.61 Aligned_cols=105 Identities=25% Similarity=0.347 Sum_probs=84.5
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEe-CCCCC
Q 002193 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLD-EDKYF 74 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~-g~sDPYv~v~l~~-----~k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D-~d~~~ 74 (955)
.|.|.|++|++|..+... ..++|||+|++.. .+.+|+...++.+|.+-+...|.-.++...|.++||- +.+..
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd 349 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMD 349 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccc
Confidence 578999999999665433 3589999999952 3578888889999988888999888888999999996 55667
Q ss_pred CCceeEeeEeecccccccCCCCCCcEEEEcccCC
Q 002193 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (955)
Q Consensus 75 ~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~ 108 (955)
++.|+|.+.+-+.++... ......||+|.+..
T Consensus 350 ~k~fmg~aqi~l~eL~ls--~~~~igwyKlfgss 381 (405)
T KOG2060|consen 350 HKSFMGVAQIMLDELNLS--SSPVIGWYKLFGSS 381 (405)
T ss_pred hHHHhhHHHHHhhhhccc--cccceeeeeccCCc
Confidence 788999999999998432 12467899998654
No 157
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=96.23 E-value=0.0066 Score=58.42 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=49.7
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|.|++.+.....|.|+|||+|...+.. .||++++..-.-..+...+.|+.|..
T Consensus 43 ~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~-~iG~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 43 CYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND-FLGKVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred CCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc-EeEEEEEEHHHcccCCCCCCEEECCC
Confidence 46999999999887766788999999999765555 99999999765444556789999974
No 158
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=96.19 E-value=0.0067 Score=60.60 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=52.2
Q ss_pred HhhcccceeccccCCCCC--ceeEEEEEecCCccC---cccccceeEEeeeecCCCcccceEEecCCcchhh
Q 002193 519 QARKQKEIFEYDAMDEPP--SMLDVEVYDFDGPFN---EATSLGHAEINFVKSDISDLADVWIPLQGKLAQA 585 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p--~~~~v~~~d~d~~~~---~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~ 585 (955)
.+|.|+|+|+|+ ++| +.|.|+||+=|.+.+ ....||.+.|....-..++..+-|+||.+..+-.
T Consensus 50 ~nP~W~E~F~f~---~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 50 DTLFWGEHFEFS---NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred CCCcceeeEEec---CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 489999999993 444 689999998888774 3459999999988877888999999998766543
No 159
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.18 E-value=0.0072 Score=58.10 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=46.0
Q ss_pred HhhcccceeccccCC--CC-CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAMD--EP-PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~--~~-p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
.+|.|.|.|+|+.+. ++ -..|.|+|||+|...+.. .||.++|.+-. ...+-...|++|+
T Consensus 64 ~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~-~iG~~~i~l~~-~~~~~~~~W~~L~ 125 (125)
T cd04031 64 LNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGEND-FLGEVVIDLAD-ALLDDEPHWYPLQ 125 (125)
T ss_pred CCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCc-EeeEEEEeccc-ccccCCcceEECc
Confidence 589999999997554 22 368999999999854444 99999999876 4445568999995
No 160
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=96.13 E-value=0.007 Score=58.43 Aligned_cols=62 Identities=24% Similarity=0.364 Sum_probs=47.1
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCC-----CcccceEEecCCcc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-----SDLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~-----~~~~~~w~~l~~~~ 582 (955)
.+|.|.|.|+|+.-+.....|.++|||.|.- +. ..||++.|..-+-.. +...+.|++|..+.
T Consensus 39 ~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~-~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 39 SNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KD-DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred CCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cC-ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 4789999999964333457899999999974 44 489999998876433 23467999998765
No 161
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.13 E-value=0.0076 Score=58.09 Aligned_cols=61 Identities=28% Similarity=0.508 Sum_probs=48.9
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|.|+.-. +++ ..|.|+|||.|.-.+. ..||++.|.+-.-..++..+.|++|.+
T Consensus 62 ~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~-~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 62 LNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRD-ECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred CCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCC-ceeEEEEEecccccCCCCcceEEECcC
Confidence 578899999996433 233 5899999999875444 499999999988777889999999964
No 162
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.11 E-value=0.0059 Score=54.83 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=63.8
Q ss_pred EEEEEEeeCCCCCCCCCCCCc--EEE--EEEC-CeEEEeeeecCCCCCeeceEEEEEEe---CCCCeEEEEEEeCCCCCC
Q 002193 4 VVRVIEARNIPAMDQNGYSDP--YVR--LQLG-RQRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDEDKYFN 75 (955)
Q Consensus 4 ~V~VieArnL~~~d~~g~sDP--Yv~--v~l~-~~k~rTkvi~~t~nP~WnE~F~F~v~---~~~~~L~V~V~D~d~~~~ 75 (955)
-++|+.++||......| -+| |++ +++. +-..+|++.....||.+.|+|.|.+. -..-.|.+.|+..- .+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~--~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT--PR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC--Cc
Confidence 37899999997765444 344 443 2333 34689999999999999999999982 23457999999943 46
Q ss_pred CceeEeeEeecccccc
Q 002193 76 DDFVGFLKIPVSRVFD 91 (955)
Q Consensus 76 d~~LG~v~V~L~~l~~ 91 (955)
...||.+.+.++++-+
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 6799999999998754
No 163
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=96.07 E-value=0.0075 Score=58.43 Aligned_cols=62 Identities=24% Similarity=0.235 Sum_probs=49.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~ 582 (955)
.+|.|.|.|.|+. ...-..|.|+|||+|.-.+.. .||++.|++-.-........|++|.++.
T Consensus 42 ~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~~~~~~-~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 103 (126)
T cd08678 42 SNPFWDEHFLFEL-SPNSKELLFEVYDNGKKSDSK-FLGLAIVPFDELRKNPSGRQIFPLQGRP 103 (126)
T ss_pred CCCccCceEEEEe-CCCCCEEEEEEEECCCCCCCc-eEEEEEEeHHHhccCCceeEEEEecCCC
Confidence 5799999999976 333468999999999977666 9999999986544456678899998763
No 164
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.07 E-value=0.006 Score=58.74 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=48.7
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|+|+... ++. ..|.|+|||+|.- .....||+++|.+..-..++..+.|++|++
T Consensus 62 ~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08385 62 LNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF-SKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124 (124)
T ss_pred CCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEEecCcccCCCCcceEEEccC
Confidence 478999999996532 222 4799999999974 444499999999988667888999999974
No 165
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.06 E-value=0.0081 Score=58.04 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=49.0
Q ss_pred hhcccceeccccCC--CCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCc
Q 002193 520 ARKQKEIFEYDAMD--EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 520 ~~~~~e~~~f~~~~--~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~ 581 (955)
.|.|-|.|+|+... +|+ +.|.|+|||+|. ......||++.|.+..-..++..+.|++|.-.
T Consensus 50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 50 SPKYNETFQFILGNEDDPESYELHICVKDYCF-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred CCccCcEEEEEeeCcCCCceeEEEEEEEEecc-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 67888999998653 444 569999999994 34344899999998887788889999999654
No 166
>PF14470 bPH_3: Bacterial PH domain
Probab=96.06 E-value=0.064 Score=49.02 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=65.8
Q ss_pred CCCCCeeEEEEEeeEee-ecccCeEEEeecceEEEEecC-CCceeEEEEeccccccccccCCcccCCCCCeEEEEEeeCC
Q 002193 637 LPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANL-FGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGR 714 (955)
Q Consensus 637 lp~~E~Li~~f~Cal~r-~~~~~GrlYiS~~~icF~S~~-~g~~tk~~Ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~ 714 (955)
|.++|.++....|.+.. .-...|-+++|+..|-|++.- +|......|||++|.+|+..+..+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~---------------- 64 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL---------------- 64 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc----------------
Confidence 56899999999998874 233459999999999999875 666888999999999999876321
Q ss_pred CcCcCCCceeeccCCceEEEeccccchHHHHHHHH
Q 002193 715 GMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIM 749 (955)
Q Consensus 715 ~~~~~~~~~~~~~~~~~k~~F~sF~~rd~a~~~i~ 749 (955)
.+.+.+.. +..++.|.++ +.+.+-.+..
T Consensus 65 -----~~~i~i~~-~~~~~~i~~i-~k~~~~~~~~ 92 (96)
T PF14470_consen 65 -----GGKITIET-NGEKIKIDNI-QKGDVKEFYE 92 (96)
T ss_pred -----ccEEEEEE-CCEEEEEEEc-CHHHHHHHHH
Confidence 12333333 3358889888 6665544443
No 167
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=96.05 E-value=0.0067 Score=57.34 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=46.9
Q ss_pred HhhcccceeccccCCCC----CceeEEEEEecCCccCcccccceeEEeeeecCC---CcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMDEP----PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI---SDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~----p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~---~~~~~~w~~l~~ 580 (955)
.+|.|.|.|.|++...+ -..|.++|||.|...+.. .||++.|.+-.-.. ....+.|++|.+
T Consensus 43 ~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~-~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 43 NCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDT-LIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCC-ccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 37899999999765432 147999999999877655 99999999865322 256788999965
No 168
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.04 E-value=0.0084 Score=60.10 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=48.8
Q ss_pred HhhcccceeccccC--------------CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCC-cccceEEecCCcc
Q 002193 519 QARKQKEIFEYDAM--------------DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDIS-DLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~~e~~~f~~~--------------~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~-~~~~~w~~l~~~~ 582 (955)
..|.|.|.|+|+.. +++. ..|.|+|||.|.- .....||.+.|+...-..+ ...+.|++|..+.
T Consensus 46 ~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 46 NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred CCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC-CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 47889999999874 2332 6899999999985 4445899999998875555 5679999997654
No 169
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=95.88 E-value=0.0087 Score=58.32 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=49.2
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCcc-----CcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPF-----NEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~-----~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|.| .+.++...|+|+|||.|.-. .....||.+.|+.-.-..++-.+.|++|.+
T Consensus 46 ~nP~WnE~f~f-~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 46 SNPRWNEQYTW-PVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCcceeEEEE-EecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 48999999999 56678889999999998752 344589999999655456677789999984
No 170
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.73 E-value=0.14 Score=58.07 Aligned_cols=123 Identities=18% Similarity=0.366 Sum_probs=95.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCeeceEEEEEEeC--------CCCeEEEEEEeCC-CC
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--------LKDELVISVLDED-KY 73 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~--------~~~~L~V~V~D~d-~~ 73 (955)
+.|+|++|+|.+... ...-.+..+++++...|-.+..+..|.||.+..+.++. .+..|++++|..| .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998763 24457777889999999999999999999999998832 2468999999988 44
Q ss_pred CCCceeEeeEeecccc---cccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCC
Q 002193 74 FNDDFVGFLKIPVSRV---FDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTS 130 (955)
Q Consensus 74 ~~d~~LG~v~V~L~~l---~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~ 130 (955)
+..+.+|.+.++|... ... +......||+|.+-+.+- .+..-+|.|.+.......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~y-~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSKY-KKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEcccccccccc-ccccCCCeeEcccccccc-ccCCccEEEEEEEecccc
Confidence 6778999999999998 332 224678999998763221 234678999998886643
No 171
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=95.60 E-value=0.012 Score=57.08 Aligned_cols=60 Identities=22% Similarity=0.383 Sum_probs=48.5
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
.+|.|.|.|+|+.-. +++ ..|.|+|||+|. +.....||.+.|+.-.-...+..+.|+||.
T Consensus 64 ~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 64 TNPVYNETLKYSISHSQLETRTLQLSVWHYDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEECCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 578899999996422 233 379999999996 445559999999999888889999999983
No 172
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=95.54 E-value=0.02 Score=57.20 Aligned_cols=65 Identities=20% Similarity=0.278 Sum_probs=52.6
Q ss_pred HhhcccceeccccCCCCCceeEEEEE-ecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhh
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVY-DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA 585 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~-d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~ 585 (955)
.+|.|.|.|+|+.. ..=.+|.|+|| |+|. ++....||.++|..-+-..++..+.|++|.-+++|.
T Consensus 78 lnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~~ 143 (146)
T cd04028 78 LDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSLV 143 (146)
T ss_pred CCCccCCeEEEEEc-CCCCEEEEEEEeCCCC-CCCCceEEEEEEEcccccCCCCceeEEecCCccccc
Confidence 35677799999765 44458999999 7885 666669999999998877778889999999888764
No 173
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.54 E-value=0.012 Score=66.23 Aligned_cols=119 Identities=18% Similarity=0.332 Sum_probs=87.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeecCCCCCeeceEEEEEEeC---C---------CCeEEE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---L---------KDELVI 65 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~-----~~k~rTkvi~~t~nP~WnE~F~F~v~~---~---------~~~L~V 65 (955)
|.+.|+++.+++.....-..|-|+++..- .++.+|.+++.+.+|.|+|.|.+.+.. . ...+.+
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 44567777777665433335778888762 456889999999999999999999843 1 247999
Q ss_pred EEEeCCCC-CCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 66 SVLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 66 ~V~D~d~~-~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
++|+...| ..|.++|.+.+.+..|.. ..-....++|.+.. ....|+|.+.+....-
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Len---~cei~e~~~l~DGR----K~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILEN---MCEICEYLPLKDGR----KAVGGKLEVKVRIRQP 505 (523)
T ss_pred EEeeccccccccceeceeeeeehhhhc---ccchhhceeccccc----cccCCeeEEEEEEecc
Confidence 99998865 678999999999988843 23344567777543 3578999999887643
No 174
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=95.49 E-value=0.016 Score=56.13 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=48.4
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
.+|.|.|.|+|+... ++. ..|.|+|||+|. +.....||.++|..-.-..++....|++|.
T Consensus 64 ~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 64 LNPVFNETLRYKVEREELPTRVLNLSVWHRDS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCccCceEEEECCHHHhCCCEEEEEEEeCCC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 578899999997432 344 589999999997 444459999999998877778889999984
No 175
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=95.49 E-value=0.012 Score=59.23 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=45.4
Q ss_pred hhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEE
Q 002193 520 ARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWI 576 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~ 576 (955)
+|-|.|+|.| ++-||=..+.|+|||.|. |+...-+|.|+|.... .=+-+-+|+
T Consensus 50 NPeWNe~ltf-~v~d~~~~lkv~VyD~D~-fs~dD~mG~A~I~l~p--~~~~~~~~~ 102 (168)
T KOG1030|consen 50 NPEWNEELTF-TVKDPNTPLKVTVYDKDT-FSSDDFMGEATIPLKP--LLEAQKMDY 102 (168)
T ss_pred CCcccceEEE-EecCCCceEEEEEEeCCC-CCcccccceeeeccHH--HHHHhhhhc
Confidence 6889999999 999999999999999998 8888899999999886 334445554
No 176
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=95.43 E-value=0.027 Score=54.65 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=46.2
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
.+|.|.|+|.| ...++...|.|+|||+|...+ ..||++++++-. ..+....|++|+
T Consensus 46 ~nP~Wne~f~f-~~~~~~~~l~i~V~d~~~~~d--~~lG~~~~~l~~--~~~~~~~~~~l~ 101 (126)
T cd04046 46 LSPEFDTQAIF-YRKKPRSPIKIQVWNSNLLCD--EFLGQATLSADP--NDSQTLRTLPLR 101 (126)
T ss_pred CCCcccceEEE-EecCCCCEEEEEEEECCCCCC--CceEEEEEeccc--CCCcCceEEEcc
Confidence 57999999999 455778899999999998653 489999999865 346777889996
No 177
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=95.39 E-value=0.025 Score=54.73 Aligned_cols=60 Identities=15% Similarity=0.382 Sum_probs=49.8
Q ss_pred HhhcccceeccccC--CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAM--DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~--~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
.+|.|-|.|+|+.+ ++++ ..|.++|||+|. +.....||.+.|++-.-..++....|++|+
T Consensus 61 ~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 61 PNPVFNETFTFSRVEPEELNNMALRFRLYGVER-MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcccCEEEECCCCHHHhccCEEEEEEEECCC-cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 68889999999632 2333 578999999997 555559999999999988899999999996
No 178
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.37 E-value=0.012 Score=79.20 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=54.5
Q ss_pred HhhcccceeccccCCCCC--ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC---cchhh
Q 002193 519 QARKQKEIFEYDAMDEPP--SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG---KLAQA 585 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p--~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~---~~~~~ 585 (955)
..|.|.|+|.| ..|+|| ..+.++|||.| .|... ++|+++|+.-+--.+..-.-|++|.. |.||.
T Consensus 2022 ~nP~Wne~f~~-~~~~p~~~~~l~iev~d~d-~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~ 2090 (2102)
T PLN03200 2022 SSPEWKEGFTW-AFDSPPKGQKLHISCKSKN-TFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSS 2090 (2102)
T ss_pred CCCCcccceee-eecCCCCCCceEEEEEecC-ccCCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCc
Confidence 57889999999 999999 68999999999 47555 99999999887555677888999994 78875
No 179
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=95.33 E-value=0.016 Score=55.82 Aligned_cols=61 Identities=26% Similarity=0.291 Sum_probs=48.9
Q ss_pred HhhcccceeccccCCC-CC-ceeEEEEEecCCcc-CcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAMDE-PP-SMLDVEVYDFDGPF-NEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-~p-~~~~v~~~d~d~~~-~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
..|.|.|.|.|+.-.+ +. ..+.|+|||.|.-+ .....||+++|.+-.-..++..+.|++|.
T Consensus 64 ~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 64 LNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 4788999999975433 22 68999999999864 44559999999998876778889999984
No 180
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=95.32 E-value=0.024 Score=56.01 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=50.6
Q ss_pred HhhcccceeccccCCC---------------CCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcch
Q 002193 519 QARKQKEIFEYDAMDE---------------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 583 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~---------------~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~ 583 (955)
..|.|.|.|.|++.+. .+..|.|+|||+|...+.. .||.++|.+..--.....+.|++|..+.+
T Consensus 45 ~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~-~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 45 NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD-FLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred CCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc-EEEEEEEehhhccCCCcccceEecCCcCC
Confidence 4789999999987665 5779999999999864444 89999998765334456699999987754
No 181
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.29 E-value=1.1 Score=45.45 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=105.0
Q ss_pred eeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccc-------cCC-CceEEEEEE
Q 002193 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-------KLI-KATKGFEEQ 328 (955)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~-------~~~-k~~~~te~Q 328 (955)
...|++++++++.++.++ .||+..++..+..+.....-... ++ ..+.++.-..+.. +.+ .....++++
T Consensus 4 ~~~~~~~~~~v~~~~~d~--~y~~~r~~~~g~~~~~~~~~~~~-~~-g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE--DYWEARCAALGADNAEVESFEVD-GD-GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH--HHHHHHHHHcCCCCceEEEEEEc-CC-eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 467899999999999875 59999999999866665554333 22 3333333333321 233 467788888
Q ss_pred EEEecCCCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHH
Q 002193 329 TYLKADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (955)
Q Consensus 329 ~~~~~d~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~ 408 (955)
+..-.++..+....++..+++| ..+.-.+.+++ ....|++.+...|+= +=.++-|+||+-+..-+...+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~------~~~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~ 148 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRP------DGGGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLL 148 (159)
T ss_pred EEecCCCCeEEEEEEEEecCce----EEEEEEEEEec------CCCCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHH
Confidence 8854567778887777777555 56788888883 567888888877743 236899999999999999888
Q ss_pred HHHHHHHhhc
Q 002193 409 EQFATFLSQT 418 (955)
Q Consensus 409 ~~~~~~l~~~ 418 (955)
..-.+...+.
T Consensus 149 ~~e~~~~~~w 158 (159)
T PF10698_consen 149 EAEQEFTAEW 158 (159)
T ss_pred HHHHHHHHhh
Confidence 8877776654
No 182
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.25 E-value=0.019 Score=54.96 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=46.9
Q ss_pred HhhcccceeccccCCC-C-CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDE-P-PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-~-p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|.|+.-++ + -..|.|+|||+|...+.. .||++.|++-.-..++-.+.|++|
T Consensus 63 ~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~-~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 63 TNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNT-FLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCc-eeeEEEEecccccccCCCccEEEC
Confidence 4688999999964332 2 358999999999766555 999999998776667778999997
No 183
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.20 E-value=0.028 Score=55.16 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=45.9
Q ss_pred HhhcccceeccccCC---------CCCceeEEEEEecCCccCcccccceeEEe----eeecCCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMD---------EPPSMLDVEVYDFDGPFNEATSLGHAEIN----FVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~---------~~p~~~~v~~~d~d~~~~~~~~~g~~~~~----~~~~~~~~~~~~w~~l~~~ 581 (955)
.+|.|.|.|.|+... +.|..|.|+|||+|...+.. .||++.|. +-+.......+.|++|..+
T Consensus 44 ~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~-~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~ 118 (135)
T cd04017 44 LSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDE-FLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG 118 (135)
T ss_pred CCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCc-cceEEEeeeeeecccCCCCCCCceEEEeecC
Confidence 578899999997432 24568999999999965555 99999984 3322235688899999743
No 184
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=95.13 E-value=0.025 Score=54.47 Aligned_cols=60 Identities=20% Similarity=0.476 Sum_probs=48.1
Q ss_pred HhhcccceeccccC--CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC
Q 002193 519 QARKQKEIFEYDAM--DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~--~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~ 579 (955)
..|.|.|.|.|++. +++. ..|.++|||+|. +.....||+++|.+-.-..++..+.|++|.
T Consensus 62 ~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 62 LNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCccceeEEEcccCHHHhCCCEEEEEEEeCCC-CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 57899999999743 2333 369999999997 444458999999999877788899999984
No 185
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=95.03 E-value=0.026 Score=55.72 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=45.5
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCC-----CcccceEEecCCcc-hhhh
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-----SDLADVWIPLQGKL-AQAC 586 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~-----~~~~~~w~~l~~~~-~~~~ 586 (955)
.+|.|.|.|+|.+.+..-..|.|+|||.|.-.+. ..||+++|+...--. ...-..|++|.++- |+.|
T Consensus 58 ~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d-~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~ 130 (136)
T cd08375 58 LNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD-DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVV 130 (136)
T ss_pred CCCccCceEEEEecCccCCEEEEEEEECCCCCCC-CeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEE
Confidence 5899999999976554446899999999965444 499999998743111 12223466665544 4444
No 186
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=95.00 E-value=0.04 Score=55.68 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=59.7
Q ss_pred HhhcccceeccccCCCC---------CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecC-Ccchhhhcc
Q 002193 519 QARKQKEIFEYDAMDEP---------PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ-GKLAQACQS 588 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~---------p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~-~~~~~~~~~ 588 (955)
..|.|.|.|.|+. ... -..|.++|||.|+-+.....||.|+|+...-....-...|++|- |+- .|..
T Consensus 52 lnPvfNE~f~f~I-~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k--~~Gg 128 (155)
T cd08690 52 NSPEYNESFKLNI-NRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK--ATGG 128 (155)
T ss_pred CCCcccceEEEEe-ccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCC--CcCC
Confidence 4688889999964 332 23599999999997766669999999998754444456699865 555 6788
Q ss_pred ccccceeccCCC
Q 002193 589 KLHLRIFLNNTK 600 (955)
Q Consensus 589 ~~~~~~~~~~~~ 600 (955)
+||+++-+.+.=
T Consensus 129 ~l~v~ir~r~p~ 140 (155)
T cd08690 129 KLEVKVRLREPL 140 (155)
T ss_pred EEEEEEEecCCC
Confidence 999988876653
No 187
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.96 E-value=0.05 Score=66.24 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=86.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeeecC-CCCCeece-EEEEEE--eCCCCeEEEEEEeC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRK-SLSPSWEE-EFSFKV--EDLKDELVISVLDE 70 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~-------~~k~rTkvi~~-t~nP~WnE-~F~F~v--~~~~~~L~V~V~D~ 70 (955)
+|.|+||+|.-|..++ ...||.|.+- ...++|+++.. +.||+|+| .|.|.- -+.-..|+|.||+.
T Consensus 704 t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred eEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 6899999999998765 4489999882 24588888875 79999996 588874 23345899999998
Q ss_pred CCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCCCCCcccCCCCCCCcc
Q 002193 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSSADFNINSDPLDQL 144 (955)
Q Consensus 71 d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~~~~~~~~~~~~~~~~ 144 (955)
.. .+||+-.+|+..+.. +...+.|...... .-....|.+.+.+..-..+...++...+++++
T Consensus 780 gg----K~ig~RIlpvd~l~~------GYrhv~LRse~Nq--pl~lp~Lfv~i~~kdyvpd~~~d~~~AL~nPi 841 (1189)
T KOG1265|consen 780 GG----KFIGQRILPVDGLNA------GYRHVCLRSESNQ--PLTLPALFVYIVLKDYVPDDLSDLVEALANPI 841 (1189)
T ss_pred CC----ceeeeeccchhcccC------cceeEEecCCCCC--ccccceeEEEEEeeccCCchhhhHHHHHhChH
Confidence 75 699999999998843 5667777755432 12234566666554444443333333344443
No 188
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=94.82 E-value=0.029 Score=56.57 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=42.9
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|.|.+.+.....|.|+|||+| ...||++.|..-.-. +.-.+.|++|
T Consensus 100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 47999999999664434578999999999 448999999976533 3557999987
No 189
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=94.64 E-value=0.032 Score=53.74 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=51.0
Q ss_pred HhhcccceeccccCCCC-----CceeEEEEEecCCccCcccccceeEEeeeecCCC-----cccceEEecCCcchhhh
Q 002193 519 QARKQKEIFEYDAMDEP-----PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDIS-----DLADVWIPLQGKLAQAC 586 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~-----p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~-----~~~~~w~~l~~~~~~~~ 586 (955)
..|.|.|.|.|+. .++ -..|.|+|||++.-.+.. .||+++|.+..-... ++...|++|.++.++.+
T Consensus 45 ~~P~Wne~f~f~v-~~~~~~~~~~~l~~~v~d~~~~~~~~-~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~ 120 (125)
T cd04051 45 TNPTWNETLRFPL-DERLLQQGRLALTIEVYCERPSLGDK-LIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ 120 (125)
T ss_pred CCCCCCCEEEEEc-ChHhcccCccEEEEEEEECCCCCCCC-cEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC
Confidence 5799999999955 444 689999999998755555 999999997653222 24589999998887665
No 190
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=94.62 E-value=0.036 Score=54.06 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=43.2
Q ss_pred HhhcccceeccccCCC-C-CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDE-P-PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-~-p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|.|++..+ + ...|.|+|||+|...+.. .||.++|+.-. .++-...|+.+
T Consensus 61 ~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~-~lG~~~i~l~~--~~~~~~~W~~~ 119 (133)
T cd08384 61 LNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSND-YIGGLQLGINA--KGERLRHWLDC 119 (133)
T ss_pred CCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCcc-EEEEEEEecCC--CCchHHHHHHH
Confidence 5688999999986543 2 368999999999755554 99999999864 44555677755
No 191
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=94.56 E-value=0.041 Score=51.71 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=39.8
Q ss_pred eeEEEEEeeEee-ecccCeEEEeecceEEEEec---------------CCCceeEEEEeccccccccccC
Q 002193 642 FLINDFTCHLKR-KMLLQGRLFLSARIIGFHAN---------------LFGHKTNFFFLWEDIEDIQVLP 695 (955)
Q Consensus 642 ~Li~~f~Cal~r-~~~~~GrlYiS~~~icF~S~---------------~~g~~tk~~Ip~~dI~~I~k~~ 695 (955)
+++-++.|.+.. .....|+|.|++++|+|..+ .-.......+|++||..|.+..
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR 70 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR 70 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH
Confidence 356789999988 45578999999999999976 3344556789999999998876
No 192
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=94.41 E-value=0.037 Score=53.07 Aligned_cols=60 Identities=27% Similarity=0.258 Sum_probs=48.0
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCc---cCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGP---FNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~---~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|.|+.-.+.-..+.++|||+|.- +.....||++++++-.--..+....|++|
T Consensus 50 ~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 50 LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 5789999999975444445799999999972 44555999999999876666778899999
No 193
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=94.34 E-value=0.059 Score=51.27 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=47.2
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~ 582 (955)
..|.|.|.|.|. +.++...|.|+|||+|...+.. .||.++++... .....+.|++|..+.
T Consensus 44 ~nP~W~e~f~~~-~~~~~~~l~~~v~d~~~~~~~~-~iG~~~~~l~~--~~~~~~~~~~l~~~~ 103 (119)
T cd08377 44 LNPEWNKIFTFP-IKDIHDVLEVTVYDEDKDKKPE-FLGKVAIPLLS--IKNGERKWYALKDKK 103 (119)
T ss_pred cCCccCcEEEEE-ecCcCCEEEEEEEECCCCCCCc-eeeEEEEEHHH--CCCCCceEEECcccC
Confidence 478999999995 5667789999999999755554 99999999865 333457899997543
No 194
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.24 E-value=0.56 Score=47.24 Aligned_cols=125 Identities=23% Similarity=0.259 Sum_probs=84.4
Q ss_pred EEEEEEEeeCCCCCCCC--CCCCcEEE--EEECCeEEEeeeecCCCCCeeceEEEEEEeCC--------------CCeEE
Q 002193 3 LVVRVIEARNIPAMDQN--GYSDPYVR--LQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL--------------KDELV 64 (955)
Q Consensus 3 L~V~VieArnL~~~d~~--g~sDPYv~--v~l~~~k~rTkvi~~t~nP~WnE~F~F~v~~~--------------~~~L~ 64 (955)
|++.|+.++-...--.. +..+.-.. +.+++++++|+.+.-+.+|.++|.|.|++... ...++
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pih 90 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIH 90 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceE
Confidence 67788887644221110 23333333 34479999999999999999999999999221 35788
Q ss_pred EEEEeCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeCC
Q 002193 65 ISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNT 129 (955)
Q Consensus 65 V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~~ 129 (955)
+.|.-.|..+...++|.-.+....+...+... ...-..|.+..... ....|-|.|++.+.|..
T Consensus 91 ivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~-~~~~vEL~G~~~e~-kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 91 IVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS-TSFTVELCGVGPES-KVPVGILDLRLELLPNL 153 (156)
T ss_pred EEEEEecCCCceEeeeeceehHHHHhccCCCc-cceeEEEeccCCCC-ccceeEEEEEEEeecCC
Confidence 98988887766789999888888876543321 12223444443322 24689999999998764
No 195
>PLN03008 Phospholipase D delta
Probab=94.20 E-value=0.046 Score=67.59 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=63.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhhc--ccccccee
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQ--SKLHLRIF 595 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~--~~~~~~~~ 595 (955)
.+|.|.|.|.| .+.+|-+.|.++|||+|.. . +..||.|.|++.+-..++.-+.|++|-+..+..|. ++||++..
T Consensus 100 ~NPvWNE~F~f-~vah~~s~L~f~VkD~D~~-g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lq 175 (868)
T PLN03008 100 QEPLWDEKFNI-SIAHPFAYLEFQVKDDDVF-G-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMK 175 (868)
T ss_pred CCCCcceeEEE-EecCCCceEEEEEEcCCcc-C-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEEEE
Confidence 38999999999 6778889999999999886 4 35999999999888888999999999999999885 57777643
No 196
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.05 E-value=0.066 Score=53.86 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=49.3
Q ss_pred HhhcccceeccccCCCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCc-------ccceEEecCCcchhh
Q 002193 519 QARKQKEIFEYDAMDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD-------LADVWIPLQGKLAQA 585 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~-------~~~~w~~l~~~~~~~ 585 (955)
.+|.|.|.|.|+.+...+ ..|.++|||+|..-+.. .||.++|++-.-...+ .+..|+.|-|+..+.
T Consensus 57 ~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd-~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 57 YNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDD-VIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred CCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCC-EEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 489999999996544333 48999999999975555 8999999976422222 468999998876653
No 197
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=93.93 E-value=0.067 Score=52.23 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=46.5
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEeeeecCC---CcccceEEecC
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDI---SDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~---~~~~~~w~~l~ 579 (955)
.+|.|.|.|.|+..+ +++ ..|.|+|||+|. +.....||.+.|+.-.-.. ++...-|++|.
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSSRQLQVSVWHSRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCCccceEEEEEcCHHHhCCcEEEEEEEeCCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 578888999998533 455 599999999986 5555699999999855433 45788999984
No 198
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=93.82 E-value=0.049 Score=52.44 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=47.2
Q ss_pred HhhcccceeccccC-CCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAM-DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~-~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
.+|.|.|.|.|+.. ++....|.|+|||.|.-......||.+.|+.-.-..++--+-|+.|
T Consensus 59 ~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 59 ANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 37889999999853 3456789999999998665445999999998875556656789876
No 199
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=93.65 E-value=0.064 Score=53.60 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=37.9
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
..|.|.|.|.|. +.+|...|.++|||+|...+.. .||++++++-.
T Consensus 44 ~nP~WnE~f~f~-i~~~~~~l~~~V~D~d~~~~dd-~iG~a~i~l~~ 88 (145)
T cd04038 44 LNPVWNEELTLS-VPNPMAPLKLEVFDKDTFSKDD-SMGEAEIDLEP 88 (145)
T ss_pred CCCeecccEEEE-ecCCCCEEEEEEEECCCCCCCC-EEEEEEEEHHH
Confidence 479999999995 6677889999999999866655 99999998753
No 200
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=93.64 E-value=0.086 Score=51.08 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=43.5
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEee---eecCCCcccc--eEEecC
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINF---VKSDISDLAD--VWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~---~~~~~~~~~~--~w~~l~ 579 (955)
..|.|.|.|.|++- +...|.|+|||+|...+.. .||++++++ ++...+.... .|++|.
T Consensus 45 ~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~-~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~ 107 (125)
T cd04021 45 SNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV-LLGEASLDLSDILKNHNGKLENVKLTLNLS 107 (125)
T ss_pred CCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc-EEEEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence 47999999999753 4679999999999966665 999999995 3333334443 477774
No 201
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=93.45 E-value=0.075 Score=50.15 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=44.8
Q ss_pred Hhhcc-cceeccccCCCC--CceeEEEEEecCCccCcccccceeEEeeeecCC---CcccceEEecC
Q 002193 519 QARKQ-KEIFEYDAMDEP--PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI---SDLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~-~e~~~f~~~~~~--p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~---~~~~~~w~~l~ 579 (955)
.+|.| .|.|.|+.-.+. -..|.|+|||+|..-+.. .||.+++.+-.-.. ...-+-|++|-
T Consensus 43 ~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~-~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 43 LNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND-AIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC-ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 47999 899999654432 268999999999754444 99999999876333 33467799883
No 202
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.41 E-value=0.4 Score=49.40 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=57.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeceEEEEEE--eCC--CCeEEEEEEeCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l--~~~k----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (955)
+++|+|+.+.||... ....+-||.+.+ |++. ..|+.+.-+..+.|||.+.|++ .+. ...|.++||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 478999999999862 233566777655 4432 4555555456799999999987 333 468999999965
Q ss_pred CCC----------------CCceeEeeEeeccc
Q 002193 72 KYF----------------NDDFVGFLKIPVSR 88 (955)
Q Consensus 72 ~~~----------------~d~~LG~v~V~L~~ 88 (955)
... .+..||-+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 321 13467777766655
No 203
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=93.39 E-value=0.073 Score=52.19 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=42.4
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|.|++.. ++. ..|.|+|||+|...+.. .||.+.|.+.. .++-+.-|..|-.
T Consensus 63 ~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~-~lG~~~i~~~~--~~~~~~~w~~~~~ 123 (136)
T cd08405 63 LNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRND-LIGKIYLGWKS--GGLELKHWKDMLS 123 (136)
T ss_pred CCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCc-EeEEEEECCcc--CCchHHHHHHHHh
Confidence 478999999998643 333 58999999999865555 89999999865 2344455554433
No 204
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.01 E-value=0.092 Score=51.06 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=45.1
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCc------ccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD------LADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~------~~~~w~~l~~~ 581 (955)
..|.|.|.|.|.+ ...-..|.|+|||+|..-+. ..||++.|.+-.-..+. ...-|++|+++
T Consensus 50 ~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~~~~~-~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~ 116 (133)
T cd04033 50 LNPKWNEEFFFRV-NPREHRLLFEVFDENRLTRD-DFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116 (133)
T ss_pred CCCcEeeEEEEEE-cCCCCEEEEEEEECCCCCCC-CeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence 3689999999964 43346899999999974444 49999999966533332 35699999854
No 205
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=92.99 E-value=0.088 Score=53.58 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=54.6
Q ss_pred hhcccceeccccC--CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhhccccccceec
Q 002193 520 ARKQKEIFEYDAM--DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 596 (955)
Q Consensus 520 ~~~~~e~~~f~~~--~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~ 596 (955)
.|.|.|.|.|+.. ++++ ..|.|+|||+|. +....-||.+.|.+-.-......+.|..|.|.- ..|=..++
T Consensus 76 nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~------~~~w~~~~ 148 (162)
T cd04020 76 NPVWNHTFVYDGVSPEDLSQACLELTVWDHDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEE------ILLWQKML 148 (162)
T ss_pred CCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC-CCCCceEEEEEEeCCccccCCCccccccCChHH------HHHHHHHH
Confidence 6999999999642 3443 479999999997 544559999999987755667789999997643 25555555
Q ss_pred cCCC
Q 002193 597 NNTK 600 (955)
Q Consensus 597 ~~~~ 600 (955)
+|..
T Consensus 149 ~~p~ 152 (162)
T cd04020 149 DNPN 152 (162)
T ss_pred hCCC
Confidence 5543
No 206
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.98 E-value=0.12 Score=49.68 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=43.4
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~ 581 (955)
..|.|.|.|.| .+..+-.+|.|+|||+|...+.. .||++++....--...-..-|..+++.
T Consensus 45 ~~P~Wne~f~~-~v~~~~~~L~v~v~d~~~~~~d~-~IG~~~~~l~~l~~~~~~~~~~~~~~~ 105 (120)
T cd04045 45 LNPVWDEVLYV-PVTSPNQKITLEVMDYEKVGKDR-SLGSVEINVSDLIKKNEDGKYVEYDDE 105 (120)
T ss_pred cCCccCceEEE-EecCCCCEEEEEEEECCCCCCCC-eeeEEEEeHHHhhCCCCCceEEecCCC
Confidence 47999999999 56666689999999999766555 999999985442222333334455544
No 207
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=92.92 E-value=0.12 Score=45.71 Aligned_cols=59 Identities=29% Similarity=0.451 Sum_probs=47.4
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecC-CCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSD-ISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~-~~~~~~~w~~l 578 (955)
..|.|.|.|+|+........+.++|||.+...+.. .+|.+.+++..-. .......|++|
T Consensus 43 ~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~-~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 43 LNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDD-FLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCCcccceEEEEccCCCCCEEEEEEEecCCCCCCc-eeEEEEEeHHHhhhcCCcCcceecC
Confidence 47899999999666646778999999999977666 9999999987644 45666777775
No 208
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=92.88 E-value=0.077 Score=51.47 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=44.4
Q ss_pred HhhcccceeccccCCCC---CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEP---PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~---p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~ 581 (955)
.+|.|.|.|.|+ +..+ -..|.|+|||.|...+.. .||+++|.+-. .++-.+-|++|-..
T Consensus 62 ~~P~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~-~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 62 LNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNE-VIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCCeeeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCc-eeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 589999999996 4433 268999999999865555 99999999966 44555667666433
No 209
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=92.87 E-value=0.17 Score=47.84 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=44.0
Q ss_pred HhhcccceeccccCCC--CCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcc
Q 002193 519 QARKQKEIFEYDAMDE--PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~--~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~ 582 (955)
..|.|.|.|.|+..+. .-..|.|.|||.++ .+....+|.+.|+.+. .+...+.|++|.++.
T Consensus 40 ~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~~~g~v~l~~~~--~~~~~~~w~~L~~~~ 102 (117)
T cd08383 40 LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDIVIGKVALSKLD--LGQGKDEWFPLTPVD 102 (117)
T ss_pred CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCeeEEEEEEecCcC--CCCcceeEEECccCC
Confidence 6899999999976542 22567788888774 3444467777777665 577789999998654
No 210
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=92.74 E-value=0.14 Score=49.26 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=45.3
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeec-CCCcccceEEecCCc
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKS-DISDLADVWIPLQGK 581 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~-~~~~~~~~w~~l~~~ 581 (955)
.+|.|.|.|+|+. .++-..|.|+|||+|...+.. -||.+.+....- +.+...+.|++|.+.
T Consensus 44 ~nP~Wne~f~~~~-~~~~~~l~v~v~d~~~~~~d~-~iG~~~~~~~~~~~~~~~~~~W~~L~~~ 105 (121)
T cd04054 44 LNPFWGEEYTVHL-PPGFHTVSFYVLDEDTLSRDD-VIGKVSLTREVISAHPRGIDGWMNLTEV 105 (121)
T ss_pred CCCcccceEEEee-CCCCCEEEEEEEECCCCCCCC-EEEEEEEcHHHhccCCCCCCcEEECeee
Confidence 4899999999965 333379999999999754444 899999995432 223457899999753
No 211
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=92.71 E-value=0.55 Score=47.66 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=59.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeceEEEEEE--eCC--CCeEEEEEEeCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l--~~~k----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (955)
.++|+|+.|.++...+ .+|-||.+++ |++. ..|+-+. ..++.|||...|++ .+. ...|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 4789999999997643 4688888876 4432 2344333 36799999999987 333 468999999965
Q ss_pred CCC----CCceeEeeEeecccc
Q 002193 72 KYF----NDDFVGFLKIPVSRV 89 (955)
Q Consensus 72 ~~~----~d~~LG~v~V~L~~l 89 (955)
.-. ....+|.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 311 234689988888663
No 212
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=92.50 E-value=0.16 Score=48.99 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=44.7
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCc-ccccceeEEeeeec-CCCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNE-ATSLGHAEINFVKS-DISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~-~~~~g~~~~~~~~~-~~~~~~~~w~~l 578 (955)
.+|.|.|.|.|..-+ -..|.|+|||+|.-.+. ...||++.|++-.- ...+.+..|++|
T Consensus 44 ~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l 103 (123)
T cd08382 44 LDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDL 103 (123)
T ss_pred CCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEe
Confidence 589999999996633 57999999999986543 45899999988762 233445789998
No 213
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.23 E-value=0.17 Score=48.89 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=37.2
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeee
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFV 564 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~ 564 (955)
..|.|.|.|+|++....-..|.|+|||+|...+.. .||+++|..-
T Consensus 45 ~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd-~iG~~~i~l~ 89 (124)
T cd04037 45 LNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD-LIGETVIDLE 89 (124)
T ss_pred CCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc-eeEEEEEeec
Confidence 57999999999765444568999999999876665 9999999875
No 214
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=92.18 E-value=0.14 Score=49.66 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=44.4
Q ss_pred HhhcccceeccccC-CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCC-cccceEEec
Q 002193 519 QARKQKEIFEYDAM-DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDIS-DLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~-~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~-~~~~~w~~l 578 (955)
.+|.|.|.|+|+.- ++++ ..|.|+|||+|. +.....||.+.|..-....+ +....|++|
T Consensus 63 ~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 63 DKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCccccEEEEECCHHHhhcCEEEEEEEeCCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 46677799999743 3344 699999999984 66666999999998775344 457779876
No 215
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=92.11 E-value=0.19 Score=49.05 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=36.2
Q ss_pred hhcccceeccccCC-CCCceeEEEEEecCCccCcccccceeEEeee
Q 002193 520 ARKQKEIFEYDAMD-EPPSMLDVEVYDFDGPFNEATSLGHAEINFV 564 (955)
Q Consensus 520 ~~~~~e~~~f~~~~-~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~ 564 (955)
.|.|.|.|.|+..+ +....|.|+|||+|...+.. .||.+++++-
T Consensus 71 nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd-~IG~~~i~l~ 115 (127)
T cd04032 71 NPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD-LLGTCSVVPE 115 (127)
T ss_pred CCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC-eeEEEEEEec
Confidence 69999999996433 35789999999999976665 9999999875
No 216
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=92.10 E-value=0.18 Score=48.42 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=47.2
Q ss_pred HhhcccceeccccCCCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchh
Q 002193 519 QARKQKEIFEYDAMDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ 584 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~ 584 (955)
+.|.|.|.|.|+.- .|. +.|.++|||++.. +.. .||++.+.+-.- +.+.-|++|-.+.++
T Consensus 54 ~~P~w~e~f~f~~~-~~~~~~l~~~V~d~~~~-~~~-~iG~~~~~l~~l---~~g~~~~~l~~~~~~ 114 (128)
T cd00275 54 FNPVWNETFEFDVT-VPELAFLRFVVYDEDSG-DDD-FLGQACLPLDSL---RQGYRHVPLLDSKGE 114 (128)
T ss_pred cCCccCCcEEEEEe-CCCeEEEEEEEEeCCCC-CCc-EeEEEEEEhHHh---cCceEEEEecCCCCC
Confidence 48999999999654 444 5799999999987 555 999999998752 446678999877775
No 217
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=92.09 E-value=0.16 Score=49.41 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=44.6
Q ss_pred HhhcccceeccccC--CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCC--cccceEEecC
Q 002193 519 QARKQKEIFEYDAM--DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQ 579 (955)
Q Consensus 519 ~~~~~~e~~~f~~~--~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~--~~~~~w~~l~ 579 (955)
.+|.|.|.|+|..+ +++. ..|.++|||+|. +.....||++.|.+-.-..+ +--.+|.+|+
T Consensus 63 ~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 63 RNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC-CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 47889999999322 2323 479999999997 55555999999998765333 5578999985
No 218
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=91.98 E-value=0.19 Score=48.73 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=45.4
Q ss_pred HhhcccceeccccCCC-CCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMDE-PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|.|.+-.. ....|.|+|||.|... ...-||++++.+..-.. ...+.|++|..
T Consensus 61 ~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~-~~~~iG~~~~~l~~l~~-~~~~~w~~L~~ 121 (131)
T cd04026 61 LNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT-RNDFMGSLSFGVSELIK-MPVDGWYKLLN 121 (131)
T ss_pred CCCCccceEEEeCCchhcCCEEEEEEEECCCCC-CcceeEEEEEeHHHhCc-CccCceEECcC
Confidence 4789999999975432 3468999999998644 44599999999765332 36789999864
No 219
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=91.66 E-value=7.9 Score=39.19 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=92.9
Q ss_pred cccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeee-cccC------CccccCceE-EEE
Q 002193 795 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDK-CISR------YRGEVTSTQ-QKS 866 (955)
Q Consensus 795 ~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~-~l~p------~g~~vt~~Q-qk~ 866 (955)
+.++|++++.++.+|.|..|.....+..|..+..+..-..+.. +....+.-.++. .+ | .++.+.-+| ..+
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~-g~~v~~~~~v~~~~l-P~~~~k~v~~~l~v~~~e~w 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGD-GVRVTVRQTVPADKL-PSAARKFVGGDLRVTRTETW 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCC-eEEEEEEEecChhhC-CHHHHHhcCCCeEEEEEEEE
Confidence 3568999999999999999988877777764555554433332 333322223332 11 1 122222223 223
Q ss_pred eccCCCcEEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHH
Q 002193 867 PLPNGNGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLS 946 (955)
Q Consensus 867 ~~~d~~~~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~l~~ 946 (955)
...+.+.+-.+-...++++| ..+...+.++..+ .+|++.+...|.= |=.++-++||+.+.+.+.+.+..--+
T Consensus 82 ~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~~~---~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIPGAP----VSISGTMRLRPDG---GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEecCce----EEEEEEEEEecCC---CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHHH
Confidence 22245566666566666555 6788888888843 7888888777754 44679999999999888888877666
Q ss_pred HHHH
Q 002193 947 VIEK 950 (955)
Q Consensus 947 ~~~k 950 (955)
++.+
T Consensus 154 ~~~~ 157 (159)
T PF10698_consen 154 FTAE 157 (159)
T ss_pred HHHh
Confidence 6544
No 220
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=91.55 E-value=0.18 Score=48.40 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=49.3
Q ss_pred HhhcccceeccccCCCC----CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhh
Q 002193 519 QARKQKEIFEYDAMDEP----PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC 586 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~----p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~ 586 (955)
.+|.|.|.|.|+ +.++ -..|.|+|||.|...+.. .||+++|++..--.....+.|++|.-+--|.-
T Consensus 45 ~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~-~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~~~ 114 (124)
T cd04049 45 RNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDD-FIGEATIHLKGLFEEGVEPGTAELVPAKYNVV 114 (124)
T ss_pred CCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCC-eEEEEEEEhHHhhhCCCCcCceEeeccceEEE
Confidence 478999999995 5555 368999999999754544 99999999765434556799999976544443
No 221
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.35 E-value=0.8 Score=46.15 Aligned_cols=87 Identities=26% Similarity=0.400 Sum_probs=59.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeceEEEEEE--eC--CCCeEEEEEEeCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--ED--LKDELVISVLDED 71 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l--~~~k----~rTkvi~~t~nP~WnE~F~F~v--~~--~~~~L~V~V~D~d 71 (955)
.++|.+....++...+ ....+-|+.+++ |++. ..|.......++.|||...|++ .+ .+..|.++||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4778888888876521 223566777765 4432 3444443346899999999987 33 3468999999977
Q ss_pred CCC--CCceeEeeEeecccc
Q 002193 72 KYF--NDDFVGFLKIPVSRV 89 (955)
Q Consensus 72 ~~~--~d~~LG~v~V~L~~l 89 (955)
... .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 533 467899999998774
No 222
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=89.99 E-value=0.33 Score=45.86 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=36.3
Q ss_pred HhhcccceeccccCCC---CCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMDE---PPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~---~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
.+|.|.|.|.|+...+ +=..|.++|||+|.-.+.. .||++.|..-.
T Consensus 48 ~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd-~lG~~~i~l~~ 96 (111)
T cd04041 48 LNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADD-RLGRVEIDLKE 96 (111)
T ss_pred CCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCC-cceEEEEEHHH
Confidence 4789999999965432 3368999999999865555 99999998764
No 223
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=89.83 E-value=9.6 Score=37.41 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=75.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE---EEeeeec-CCCCCeeceEEEEEE---e-C-----CCCeEEEEEE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR---FKTKVVR-KSLSPSWEEEFSFKV---E-D-----LKDELVISVL 68 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k---~rTkvi~-~t~nP~WnE~F~F~v---~-~-----~~~~L~V~V~ 68 (955)
.+.|++.+..+++. .....|++...+... .+|.... .+..-.|||+|.+.+ . . .+..+.+.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 46788999999987 224456666666543 3444433 355678999999987 1 1 1346888898
Q ss_pred eCCCCCCCceeEeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 69 D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
....-++...+|.+.|+|.++.... ......-++|.... .....|+++|.+...
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~-~~~~~~~~~l~~~~-----~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANED-EEPITVRLLLKKCK-----KSNATLSISISLSEL 137 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcC-CCcEEEEEeCccCC-----CCCcEEEEEEEEEEC
Confidence 8754233368999999999987532 12234456666431 345678888887754
No 224
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=89.72 E-value=0.38 Score=46.11 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=41.5
Q ss_pred HhhcccceeccccCC--CC-CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEe
Q 002193 519 QARKQKEIFEYDAMD--EP-PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIP 577 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~--~~-p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~ 577 (955)
..|.|.|.|.|+.+. +. -..+.|+|||.|.. +. ..||++.|..-.-..++.-.+|+.
T Consensus 63 ~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~-~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 63 RNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GN-DFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CC-eeEEEEEEEcccCCCCcceEeecc
Confidence 379999999996443 22 25899999999976 54 499999998866444555555543
No 225
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=89.64 E-value=0.38 Score=45.45 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=35.7
Q ss_pred HhhcccceeccccCC-CCCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMD-EPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
..|.|.|.|.|+..+ +....|.++|||+|.- .....||++.++.-.
T Consensus 48 ~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~ 94 (108)
T cd04039 48 LNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQE 94 (108)
T ss_pred CCCcccceEEEEEeCccCCCEEEEEEEECCCC-CCCcceEEEEEEHHH
Confidence 478899999997654 3445899999999984 444589999998653
No 226
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=89.61 E-value=0.25 Score=48.85 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=36.0
Q ss_pred HhhcccceeccccCCC-CC-ceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMDE-PP-SMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
-+|.|.|.|.|+..++ ++ ..|.|+|||+|. +.....||++.+..-.
T Consensus 64 ~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 64 PDPEFKETFVFQVALFQLSEVTLMFSVYNKRK-MKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCcEeeeEEEECCHHHhCccEEEEEEEECCC-CCCCcEEEEEEECCcC
Confidence 3677779999986653 33 589999999998 6666699998887754
No 227
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=89.34 E-value=1.9 Score=39.51 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCCCCee-EEEEEeeEee---ec--ccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCcccCCCCCeEEEEE
Q 002193 637 LPPEEFL-INDFTCHLKR---KM--LLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTL 710 (955)
Q Consensus 637 lp~~E~L-i~~f~Cal~r---~~--~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~~~~g~~~~~i~l 710 (955)
|-++|.+ ...-.+.|.. ++ ...|++|+|.+.||+.-+.-.....+.||+.+|..++.....+. .+|=|++.+
T Consensus 10 L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~~--sSpKI~l~l 87 (89)
T PF11605_consen 10 LEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFLK--SSPKIILHL 87 (89)
T ss_dssp --TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STTS--SS-EEEEEE
T ss_pred cCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccccC--CCCeEEEEe
Confidence 3345544 4555666644 44 23699999999999986554444479999999999977664331 244455544
No 228
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=89.29 E-value=0.17 Score=49.62 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=45.3
Q ss_pred HhhcccceeccccCC-C-CCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCC
Q 002193 519 QARKQKEIFEYDAMD-E-PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 580 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~-~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~ 580 (955)
..|.|.|.|+|+.-. + +-..+.|+|||+|. +.....||.+.|++-. .++-.+.|.+|..
T Consensus 63 ~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 63 LNPVFNESFVFDIPSEELEDISVEFLVLDSDR-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCccCceEEEECCHHHhCCCEEEEEEEECCC-CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 478999999997532 2 34679999999998 4445599999999876 5667788888743
No 229
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=89.15 E-value=0.34 Score=46.73 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=41.2
Q ss_pred hhcccceeccccC-CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 520 ARKQKEIFEYDAM-DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 520 ~~~~~e~~~f~~~-~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
+|.|.|.|.||.- +++| .++.++|||+|. |..-..||++.+..-.-..+.-...|..|
T Consensus 59 nPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 59 HTQWEEELVFPLPEEESLDGTLTLTLRCCDR-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCccccEEEEeCCHHHhCCcEEEEEEEeCCC-CCCCceEEEEEEccccccCCccccchhcC
Confidence 4566699999732 3343 379999999999 55555999999987654445556667654
No 230
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.92 E-value=1.5 Score=44.64 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=51.3
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeecCCCCCeeceEEEEEE--eCC--CCeEEEEEEeCCCCCCCceeEeeEeecccc
Q 002193 20 GYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDEDKYFNDDFVGFLKIPVSRV 89 (955)
Q Consensus 20 g~sDPYv~v~l--~~~k----~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l 89 (955)
..+|-||.+++ +++. ..|+.+.-+..+.|||...|++ .+. +..|.++||+.+..++...+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34778888877 4332 3555555466789999999998 333 568999999987655677899999988663
No 231
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=88.85 E-value=0.43 Score=47.14 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=34.6
Q ss_pred HhhcccceeccccCC-CC-CceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMD-EP-PSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~-p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
.+|.|.|.|.|+.-+ ++ =..|.|+|||+|.--+.. .||++.|-...
T Consensus 63 ~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~-~iG~v~lg~~~ 110 (136)
T cd08406 63 TNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTP-NVGHVIIGPAA 110 (136)
T ss_pred CCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCC-eeEEEEECCCC
Confidence 478888999996422 22 256999999999855555 99999996643
No 232
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=88.35 E-value=0.79 Score=50.29 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=70.6
Q ss_pred EEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-EEEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCcee
Q 002193 3 LVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFV 79 (955)
Q Consensus 3 L~V~VieArnL~~~d~--~g~sDPYv~v~l~~~-k~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~L 79 (955)
|.++++++|+|..... +-+.+-||++.++.+ +.||.+......-.|.|+|..++.. ...+.+-||.|+.-.++.+.
T Consensus 53 L~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC 131 (442)
T KOG1452|consen 53 LYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLC 131 (442)
T ss_pred EEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhcccc
Confidence 7799999999955433 445788999998754 5667666556666899999998843 34788889998875555543
Q ss_pred EeeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 80 G~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
-.--+.+..+.. ...+.-+-|. -..+|++-+++-+.
T Consensus 132 ~~g~l~~~~v~r----qspd~~~Al~-------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 132 HLGLLEAFVVDR----QSPDRVVALY-------LEPRGQPPLRLPLA 167 (442)
T ss_pred ccchhhhhhhhh----cCCcceeeee-------cccCCCCceecccC
Confidence 222233333321 1122223333 12467777777654
No 233
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=88.31 E-value=0.52 Score=44.93 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=37.4
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
..|.|.|.|.|... +.-..|.|+|||+|...+.. .||+++++.-.
T Consensus 48 ~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d~-~iG~~~~~l~~ 92 (124)
T cd04044 48 SNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKDK-LIGTAEFDLSS 92 (124)
T ss_pred CCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCCc-eeEEEEEEHHH
Confidence 58999999999654 66789999999999866555 99999999553
No 234
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=87.95 E-value=1.6 Score=44.92 Aligned_cols=88 Identities=24% Similarity=0.381 Sum_probs=61.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeec--C--CCCCeeceEEEEEE--eCC--CCeEEEEE
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVR--K--SLSPSWEEEFSFKV--EDL--KDELVISV 67 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l--~~~k----~rTkvi~--~--t~nP~WnE~F~F~v--~~~--~~~L~V~V 67 (955)
.+.|+|..+.+++........|-|+.+++ |.+. ..|+... + ...+.|||...|++ .+. +..|.+++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999988776556788888876 4432 3443322 1 23577999999987 332 46899999
Q ss_pred EeCCCCC---------CCceeEeeEeecccc
Q 002193 68 LDEDKYF---------NDDFVGFLKIPVSRV 89 (955)
Q Consensus 68 ~D~d~~~---------~d~~LG~v~V~L~~l 89 (955)
|+..... .+..||-+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976533 346788888887664
No 235
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=87.80 E-value=0.56 Score=46.48 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=34.4
Q ss_pred HhhcccceeccccCCC--CCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMDE--PPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~--~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
..|.|-|.|.||.-.+ .-+.|.++|||+|+.-+ ...||++-+..-.
T Consensus 65 ~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~-~d~iG~v~lg~~~ 112 (138)
T cd08407 65 INPVWNEMIMFELPSELLAASSVELEVLNQDSPGQ-SLPLGRCSLGLHT 112 (138)
T ss_pred CCCccccEEEEECCHHHhCccEEEEEEEeCCCCcC-cceeceEEecCcC
Confidence 3566779999974321 24689999999999544 4499999998754
No 236
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=87.78 E-value=0.19 Score=49.39 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred HhhcccceeccccC-CCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAM-DEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~-~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|.|++. ++.. ..|.++|||+|..-+.. .||++.|.......++ .+.|..|
T Consensus 62 ~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~-~iG~~~l~~~~~~~~~-~~~W~~l 121 (135)
T cd08410 62 IDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSND-FIGRIVIGQYSSGPSE-TNHWRRM 121 (135)
T ss_pred CCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCc-EEEEEEEcCccCCchH-HHHHHHH
Confidence 46899999999863 3343 36999999999865555 9999988766533322 3556544
No 237
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=87.08 E-value=0.52 Score=46.01 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred HhhcccceeccccCCC-CC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAMDE-PP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~-~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
..|.|.|.|.|+.-.+ .. ..|.++|||+|..-+.. .||.+.|.... .++-...|..+
T Consensus 62 ~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~-~IG~~~l~~~~--~~~~~~~w~~~ 120 (134)
T cd08403 62 LNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNE-LIGVCRVGPNA--DGQGREHWNEM 120 (134)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCc-eeEEEEECCCC--CCchHHHHHHH
Confidence 4788999999975332 22 35899999999865454 89999998663 34445566544
No 238
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=85.94 E-value=0.96 Score=44.24 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.3
Q ss_pred hhcccceeccccCC-CC-CceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 520 ARKQKEIFEYDAMD-EP-PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 520 ~~~~~e~~~f~~~~-~~-p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
.|.|.|.|.|++-. +. ...|.|+|||+|.--+. ..||.++|.... .++--+-|.++
T Consensus 64 nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~-~~iG~~~i~~~~--~~~~~~~W~~~ 121 (136)
T cd08402 64 NPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKN-DPIGKVVLGCNA--TGAELRHWSDM 121 (136)
T ss_pred CCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCC-ceeEEEEECCcc--CChHHHHHHHH
Confidence 78899999997532 22 24799999999985444 499999999864 34444566655
No 239
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=85.65 E-value=1.6 Score=43.28 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=43.6
Q ss_pred Hhhcc-cceeccccCCCCCceeEEEEEecCCccCc--ccccceeEEeeeec---CCCcccceEEecCCcc
Q 002193 519 QARKQ-KEIFEYDAMDEPPSMLDVEVYDFDGPFNE--ATSLGHAEINFVKS---DISDLADVWIPLQGKL 582 (955)
Q Consensus 519 ~~~~~-~e~~~f~~~~~~p~~~~v~~~d~d~~~~~--~~~~g~~~~~~~~~---~~~~~~~~w~~l~~~~ 582 (955)
.+|.| .|.|.|... +...|.|+|||++.--.. ...||+++|++-.- ...+-...|++|+-.+
T Consensus 56 lnP~W~nE~f~f~v~--~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~ 123 (137)
T cd08691 56 INPVWHREQFVFVGL--PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT 123 (137)
T ss_pred CCCceEceEEEEEcC--CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC
Confidence 47999 899999763 456899999998753221 24899999996542 1122356799998443
No 240
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=84.77 E-value=8.7 Score=35.30 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCcEEEEEECCeE-EEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCcE
Q 002193 22 SDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTA 100 (955)
Q Consensus 22 sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~~ 100 (955)
.+..+++.+++.. .+|.-+. ..+..|++.|.|+++. .+.|.|.||-+|. ..+.|-.-+.|.+.. ...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~-------~~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER-------HEV 76 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc-------ccc
Confidence 6778888887654 5555543 4678899999999954 4689999998875 245566666666631 122
Q ss_pred EEEcccCCCCCCCCcccEEEEEEEE
Q 002193 101 WHSLQPKNKKSKNKDCGEILLTISF 125 (955)
Q Consensus 101 W~~L~~~~~~~~~~~~G~I~Lsl~~ 125 (955)
-.+|. ++|.+...+.|
T Consensus 77 ~~~le---------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME---------PQLCLVAELTF 92 (98)
T ss_pred eeccc---------cccEEEEEEEe
Confidence 23333 46888877776
No 241
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=84.01 E-value=1.1 Score=43.76 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=36.0
Q ss_pred hhcccceeccccCCC----CCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 520 ARKQKEIFEYDAMDE----PPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~----~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
.|.|.|.|+|+..++ .-..|.|+|||+|...+.. .||++.|.+-.
T Consensus 67 nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~-~iG~~~i~l~~ 115 (133)
T cd04009 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSND-FEGEAFLPLND 115 (133)
T ss_pred CCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCc-EeEEEEEeHHH
Confidence 688999999976543 3468999999999865555 89999998754
No 242
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=83.08 E-value=1.3 Score=39.37 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=34.8
Q ss_pred hhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEee
Q 002193 520 ARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINF 563 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~ 563 (955)
.|.|.|+|.|+.....-..|.|+|||.+..-.. ..||++.+..
T Consensus 47 ~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~-~~~G~~~~~l 89 (101)
T smart00239 47 NPVWNETFEFEVPPPELAELEIEVYDKDRFGRD-DFIGQVTIPL 89 (101)
T ss_pred CCcccceEEEEecCcccCEEEEEEEecCCccCC-ceeEEEEEEH
Confidence 899999999965554488999999999975534 4899998873
No 243
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=80.94 E-value=7.9 Score=40.11 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=43.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE---EEeeeecCCCCCeeceEEEEEE--eCC--CCeEEEEEEeCC
Q 002193 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR---FKTKVVRKSLSPSWEEEFSFKV--EDL--KDELVISVLDED 71 (955)
Q Consensus 2 ~L~V~VieArnL~~~d~~g~sDPYv~v~l--~~~k---~rTkvi~~t~nP~WnE~F~F~v--~~~--~~~L~V~V~D~d 71 (955)
.++|+|..+.++ ..+......-||.+.+ |++. .+|+.+.-+.+|.|||...|++ .+. ...|.++||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 367888888743 3222222234555544 4332 3555555567899999999987 333 468999999974
No 244
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=80.45 E-value=7.6 Score=36.79 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=58.9
Q ss_pred CeeEEEEEeeEee-ecccCeEEEeecceEEEEec-----CCCc---------eeEEEEeccccccccccCCcccCCCCCe
Q 002193 641 EFLINDFTCHLKR-KMLLQGRLFLSARIIGFHAN-----LFGH---------KTNFFFLWEDIEDIQVLPPSLSSMGSPV 705 (955)
Q Consensus 641 E~Li~~f~Cal~r-~~~~~GrlYiS~~~icF~S~-----~~g~---------~tk~~Ip~~dI~~I~k~~~~~~~~g~~~ 705 (955)
|+++-+..|.+.. -.-..||+=||+.+|+|.-. .-+. .....+++++|.+|.+..--+ -+.+
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylL---r~~a 77 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLL---QNTA 77 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhc---ccce
Confidence 5678889999988 44467999999999999952 1111 123378999999998876222 2334
Q ss_pred EEEEEeeCCCcCcCCCceeeccCCceEEEeccccchHHHHHHHHHH
Q 002193 706 IVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMAL 751 (955)
Q Consensus 706 ~~i~l~~~~~~~~~~~~~~~~~~~~~k~~F~sF~~rd~a~~~i~~l 751 (955)
+-|++. ++ ..|+| +|-+++.+...+..+
T Consensus 78 lEiF~~----------------d~-~~~f~-~F~~~~~~k~vv~~l 105 (108)
T cd01201 78 LELFLA----------------SR-TSIFF-AFPDQNAVKKVVYAL 105 (108)
T ss_pred EEEEEe----------------CC-ceEEE-EeCcHHHHHHHHhhc
Confidence 444432 12 24544 488888777766543
No 245
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=80.21 E-value=1 Score=44.30 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=35.3
Q ss_pred HhhcccceeccccCC-CCC-ceeEEEEEecCCccCcccccceeEEee
Q 002193 519 QARKQKEIFEYDAMD-EPP-SMLDVEVYDFDGPFNEATSLGHAEINF 563 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~-~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~ 563 (955)
.+|.|.|.|.|+.-. +++ ..|.|+|||.|+-.+.. .||.+.|.-
T Consensus 62 ~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~-~lG~v~ig~ 107 (137)
T cd08409 62 ASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSK-LLGRVVLGP 107 (137)
T ss_pred CCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcc-eEEEEEECC
Confidence 467888999997653 344 68999999999966665 999999973
No 246
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=80.01 E-value=48 Score=31.71 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=73.7
Q ss_pred eEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEecC-CC
Q 002193 258 QMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKAD-GK 336 (955)
Q Consensus 258 ~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~d-~~ 336 (955)
..+++++++++.+|=.++ .+.+++...+.+. + ..++ . ..+..+..+. +.+.. .+..=++...+ .+
T Consensus 7 ~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~------~--~~~~-~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 72 (144)
T cd05018 7 FRIPAPPEEVWAALNDPE-VLARCIPGCESLE------K--IGPN-E--YEATVKLKVG-PVKGT-FKGKVELSDLDPPE 72 (144)
T ss_pred EEecCCHHHHHHHhcCHH-HHHhhccchhhcc------c--cCCC-e--EEEEEEEEEc-cEEEE-EEEEEEEEecCCCc
Confidence 467899999999986543 4445543333211 1 1112 1 2222222221 11111 11111222233 34
Q ss_pred eEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHHHHHHHHHh
Q 002193 337 VFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFATFLS 416 (955)
Q Consensus 337 ~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~~~~~~~l~ 416 (955)
.+.+......+ +........|.|+ +. ++.|+|.....+...+ .++.+...-.....+....++.+.|+
T Consensus 73 ~~~~~~~~~~~----~~~~~~~~~~~l~-----~~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~ 140 (144)
T cd05018 73 SYTITGEGKGG----AGFVKGTARVTLE-----PD-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLA 140 (144)
T ss_pred EEEEEEEEcCC----CceEEEEEEEEEE-----ec-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHH
Confidence 44444322222 5567889999999 34 5679988888888654 45666666666667777777777777
Q ss_pred hcc
Q 002193 417 QTI 419 (955)
Q Consensus 417 ~~~ 419 (955)
+++
T Consensus 141 ~~~ 143 (144)
T cd05018 141 SKI 143 (144)
T ss_pred Hhh
Confidence 664
No 247
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=78.83 E-value=11 Score=35.11 Aligned_cols=69 Identities=29% Similarity=0.429 Sum_probs=45.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCeeceEEEEEE--eC--CCCeEEEEEEeCC
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--ED--LKDELVISVLDED 71 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l--~~~k----~rTkvi~~t~nP~WnE~F~F~v--~~--~~~~L~V~V~D~d 71 (955)
+.+.+..+.+++.......++-||.+++ |++. ..|+.+.-...+.|||...|++ .+ ....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566677777765544333578888876 4432 3455444456689999999987 33 3468999999864
No 248
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=78.53 E-value=9.7 Score=46.45 Aligned_cols=97 Identities=18% Similarity=0.338 Sum_probs=67.1
Q ss_pred EEEeeEeeecccCeEEEee----cceEEEEecCC------------CceeEEEEeccccccccccCCcccCCCCCe-EEE
Q 002193 646 DFTCHLKRKMLLQGRLFLS----ARIIGFHANLF------------GHKTNFFFLWEDIEDIQVLPPSLSSMGSPV-IVM 708 (955)
Q Consensus 646 ~f~Cal~r~~~~~GrlYiS----~~~icF~S~~~------------g~~tk~~Ip~~dI~~I~k~~~~~~~~g~~~-~~i 708 (955)
.|.|-++.+- |.+||+ .=.|||.+.-. ....-+.||..||.+++|... + |=-. +++
T Consensus 520 ~F~AR~~Gkk---G~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgG-l---GWK~KLvV 592 (642)
T PF11696_consen 520 EFPARYKGKK---GHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGG-L---GWKGKLVV 592 (642)
T ss_pred eeeeecCCcc---ceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhccc-c---cceeeEEE
Confidence 5899998865 999999 45799987511 235669999999999999872 3 3222 333
Q ss_pred EEeeCCCcCcCCCceee-ccCCceEEEeccccchHHHHHHHHHH
Q 002193 709 TLRQGRGMDARHGAKTQ-DEEGRLKFHFHSFVSYNVAHRTIMAL 751 (955)
Q Consensus 709 ~l~~~~~~~~~~~~~~~-~~~~~~k~~F~sF~~rd~a~~~i~~l 751 (955)
-.-.|. -....|...+ +..| +.|.++....||+.|+-|.++
T Consensus 593 GWa~g~-kEv~DGL~I~g~~~g-~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 593 GWALGE-KEVVDGLVIVGDEPG-QEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred eeecCC-cccccceEEeccCCC-CEEEEEecchHHHHHHHHHhc
Confidence 332211 1233455555 6666 489999999999999988765
No 249
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=76.90 E-value=10 Score=37.60 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=39.4
Q ss_pred EeeeecCC-CCCeeceEEEEEE--eC--CCCeEEEEEEeCCCCCCC----ceeEeeEeecccc
Q 002193 36 KTKVVRKS-LSPSWEEEFSFKV--ED--LKDELVISVLDEDKYFND----DFVGFLKIPVSRV 89 (955)
Q Consensus 36 rTkvi~~t-~nP~WnE~F~F~v--~~--~~~~L~V~V~D~d~~~~d----~~LG~v~V~L~~l 89 (955)
.|+...-+ .++.|||...|++ .+ .+..|.++||..+..... ..||-+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56655555 7999999999998 33 356899999998764444 6899999998775
No 250
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=74.71 E-value=3.5 Score=38.56 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=34.3
Q ss_pred Hhhcccceecccc----CCCCCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDA----MDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~----~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
.+|.|. .|.|.. -.++...|.|+|||+|.-.+.. .||++++.+-.
T Consensus 49 ~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~-~iG~~~~~l~~ 97 (110)
T cd04047 49 LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHD-LIGEFETTLDE 97 (110)
T ss_pred CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCc-EEEEEEEEHHH
Confidence 578888 677743 2355789999999999855555 99999998764
No 251
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=74.59 E-value=59 Score=33.28 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=59.1
Q ss_pred CCcEEEEEECCeE-EEeeeecCCC--CCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCC-C
Q 002193 22 SDPYVRLQLGRQR-FKTKVVRKSL--SPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKS-L 97 (955)
Q Consensus 22 sDPYv~v~l~~~k-~rTkvi~~t~--nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~-~ 97 (955)
..-|+++.++++. .+|+...-+. .-.+||.|.+.+....+.|.++||.... ..+..|+++.+|+-......... .
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~~ 115 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDNV 115 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccCC
Confidence 4568899887654 5555554333 3568899999997788899999999988 67889999999987754321111 1
Q ss_pred CcEEEEccc
Q 002193 98 PTAWHSLQP 106 (955)
Q Consensus 98 ~~~W~~L~~ 106 (955)
...|+...+
T Consensus 116 ~~~~~eFsS 124 (168)
T PF15625_consen 116 PLEEYEFSS 124 (168)
T ss_pred ceEeEEEcC
Confidence 345666543
No 252
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=74.53 E-value=2.1 Score=37.12 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=31.1
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCCccCcccccceeE
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAE 560 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~ 560 (955)
.+|.|.|.|+|+....+-..|.|+|||++.-.+.. .||.|.
T Consensus 45 ~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~-~iG~~~ 85 (85)
T PF00168_consen 45 SNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE-LIGEVK 85 (85)
T ss_dssp SSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE-EEEEEE
T ss_pred ccceeeeeeeeeeecccccceEEEEEECCCCCCCC-EEEEEC
Confidence 67889999999733333345999999999866544 899873
No 253
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=72.29 E-value=92 Score=29.71 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=70.5
Q ss_pred cccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeeecccCCccccCceEEEEeccCCCcE
Q 002193 795 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNGW 874 (955)
Q Consensus 795 ~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~g~~vt~~Qqk~~~~d~~~~ 874 (955)
+..+++|++.+|+++.|-+...++.-.. .++ .+. ..+. ..+..+. .+.|.+...+..-.-....+...+
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~--~~~---~~~--~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGC--ESL---EKI--GPNE--YEATVKL--KVGPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccch--hhc---ccc--CCCe--EEEEEEE--EEccEEEEEEEEEEEEecCCCcEE
Confidence 3468999999999999977544444211 111 111 1111 1122221 122332222111111111223344
Q ss_pred EEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHHHhh
Q 002193 875 LVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIEKEF 952 (955)
Q Consensus 875 vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~l~~~~~kei 952 (955)
++.-. +.+-+.......+|.|+..+ ++|+|.....+...+ .++.....-.-.-.++.+...++-+++.+
T Consensus 75 ~~~~~----~~~~~~~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGE----GKGGAGFVKGTARVTLEPDG---GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEE----EcCCCceEEEEEEEEEEecC---CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44322 22225567899999999852 689999999988765 33444433333334555566666666554
No 254
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=70.88 E-value=1.1e+02 Score=31.46 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=75.9
Q ss_pred ceeeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEe-ccccCC--CceEEEEEEEE
Q 002193 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIK-AANKLI--KATKGFEEQTY 330 (955)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k-~~~~~~--k~~~~te~Q~~ 330 (955)
+...-++++++++++.++... ...+++.. .+.+...-.. ..++ ..+.|.. ....++ .+. ++.....
T Consensus 43 ~k~~~~i~~s~e~v~~vi~d~--e~~~~w~~--~~~~~~vie~--~~~~----~~i~~~~~~~p~pvs~Rdf-v~~~~~~ 111 (195)
T cd08876 43 FKAVAEVDASIEAFLALLRDT--ESYPQWMP--NCKESRVLKR--TDDN----ERSVYTVIDLPWPVKDRDM-VLRSTTE 111 (195)
T ss_pred EEEEEEEeCCHHHHHHHHhhh--HhHHHHHh--hcceEEEeec--CCCC----cEEEEEEEecccccCCceE-EEEEEEE
Confidence 334556789999999998743 35555544 3333333221 1121 2333332 121212 222 2211112
Q ss_pred EecCCCeEEEEEEEecCCCcCCC----eeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHH
Q 002193 331 LKADGKVFAILASVSTPEVMYGG----SFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRE 406 (955)
Q Consensus 331 ~~~d~~~~~V~~~~~tpdVP~Gd----~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke 406 (955)
...+++.++|......+++|-.. .+.....|.|+ +.++++|++.....+.+.+ .+-+.+|..-+..+...
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~-----~~~~~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFT-----PLGNGKTRVTYQAYADPGG-SIPGWLANAFAKDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEE-----ECCCCeEEEEEEEEeCCCC-CCCHHHHHHHHHHHHHH
Confidence 22224555555544444466432 24455679999 5667899999999999964 45666666666666644
Q ss_pred HHHHHH
Q 002193 407 TYEQFA 412 (955)
Q Consensus 407 ~~~~~~ 412 (955)
.+..|.
T Consensus 186 ~l~~l~ 191 (195)
T cd08876 186 TLENLR 191 (195)
T ss_pred HHHHHH
Confidence 444443
No 255
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=68.88 E-value=13 Score=38.55 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.7
Q ss_pred EEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCCC-C--CceeEeeEeeccc
Q 002193 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N--DDFVGFLKIPVSR 88 (955)
Q Consensus 34 k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~-~--d~~LG~v~V~L~~ 88 (955)
...|.+..++.+|.|+|+|.++++. .+..|.+++++...-. + ...+|.+-+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3677778788999999999999943 2467999999966422 1 1578888888766
No 256
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=68.76 E-value=6 Score=38.20 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.8
Q ss_pred HhhcccceeccccCCCCCceeEEEEEecCC------ccCcccccceeEEeeee
Q 002193 519 QARKQKEIFEYDAMDEPPSMLDVEVYDFDG------PFNEATSLGHAEINFVK 565 (955)
Q Consensus 519 ~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~------~~~~~~~~g~~~~~~~~ 565 (955)
..|.|-|.|+|. ++ .+-.+.++||||+- .......+|.+.|.+-.
T Consensus 42 lnPvWnE~F~i~-l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 42 TEPNWNEEFEIE-LE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCccceEEEEE-eC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 579999999996 44 48899999999941 23444589999998854
No 257
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=68.15 E-value=26 Score=36.67 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=36.8
Q ss_pred EEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCCCC--CceeEeeEeec
Q 002193 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN--DDFVGFLKIPV 86 (955)
Q Consensus 34 k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~~~--d~~LG~v~V~L 86 (955)
.++|.|...+.+|.|+|++.+.++. ....|.+++++...-.+ ...+|-+-+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4788999899999999999999942 35678888877543111 13455555554
No 258
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=67.72 E-value=1.1e+02 Score=28.87 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=62.3
Q ss_pred ceeeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEec
Q 002193 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKA 333 (955)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~ 333 (955)
+-...+++++++++|+++-.++ .+.++... ....++..+++ +....|.+.+... .. ..+++...
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~-~~~~~~~~~~~-----~~g~~~~~~~~~g-----~~----~~~~i~~~ 66 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFG-GLHKWHPA-VASCELEGGGP-----GVGAVRTVTLKDG-----GT----VRERLLAL 66 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcC-chhhhccC-cceEEeecCCC-----CCCeEEEEEeCCC-----CE----EEEEehhc
Confidence 3455678999999999997654 44444322 22222222222 1133455554321 11 12344433
Q ss_pred C-C-CeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee-eehhhhhhcHHHHHHHHHHH
Q 002193 334 D-G-KVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQST-MMKGMIENGARSALRETYEQ 410 (955)
Q Consensus 334 d-~-~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss-~~K~~Iek~a~~G~ke~~~~ 410 (955)
+ . ..+... +.-.+-|+.+ ....|.++ +.++++|++. +.+.+.... ..-..+.+....+++..++.
T Consensus 67 ~~~~~~i~~~--~~~~~~~~~~---~~~~~~~~-----~~~~~~t~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (140)
T cd07821 67 DDAERRYSYR--IVEGPLPVKN---YVATIRVT-----PEGDGGTRVT--WTAEFDPPEGLTDELARAFLTGVYRAGLAA 134 (140)
T ss_pred CccCCEEEEE--ecCCCCCccc---ceEEEEEE-----ECCCCccEEE--EEEEEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 3 2 333322 2111344443 56789999 4555667755 455555542 22233333333444444444
Q ss_pred HHH
Q 002193 411 FAT 413 (955)
Q Consensus 411 ~~~ 413 (955)
|.+
T Consensus 135 L~~ 137 (140)
T cd07821 135 LKA 137 (140)
T ss_pred HHH
Confidence 443
No 259
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=66.68 E-value=1.3e+02 Score=31.77 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=87.9
Q ss_pred eeeEE-ecChhhhhcccccCCCcchHHH-HHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEec
Q 002193 256 VDQMY-VIAPQDLNTLLFSPDSNFPRTW-AEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKA 333 (955)
Q Consensus 256 ~d~~~-~~~~~~l~~llF~~~S~f~~~~-~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~ 333 (955)
.--+| .++++.|+++|... .+.++. ....+...++.. ++.+ .+.+.|...+-.+++.=-..........
T Consensus 54 ~~~~~~~~s~~~~~~~l~D~--~~r~~Wd~~~~~~~~le~~----~~~~---~~i~y~~~~~P~P~s~RD~V~~r~~~~~ 124 (209)
T cd08870 54 VRGVFEDCTPELLRDFYWDD--EYRKKWDETVIEHETLEED----EKSG---TEIVRWVKKFPFPLSDREYVIARRLWES 124 (209)
T ss_pred EEEEEcCCCHHHHHHHHcCh--hhHhhhhhheeeEEEEEec----CCCC---cEEEEEEEECCCcCCCceEEEEEEEEEc
Confidence 34566 57999999999753 455433 333443334321 1112 4555555544444432112212222233
Q ss_pred CCCeEEE-EEEEecCCCcCCCeeEe---EEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHHH
Q 002193 334 DGKVFAI-LASVSTPEVMYGGSFKT---ELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYE 409 (955)
Q Consensus 334 d~~~~~V-~~~~~tpdVP~Gd~F~v---~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~~ 409 (955)
+++.++| ..++.-|.+|-.++-+| .-+|.|++-+ .+++.|++.+.+..+- +..+=+.++...+..|+-.++.
T Consensus 125 ~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~---~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~ 200 (209)
T cd08870 125 DDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK---GDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLK 200 (209)
T ss_pred CCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec---CCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHH
Confidence 2444544 44555568998544443 4568888311 1678899888888876 4446667777788888988888
Q ss_pred HHHHHHhhc
Q 002193 410 QFATFLSQT 418 (955)
Q Consensus 410 ~~~~~l~~~ 418 (955)
.|.+.+++|
T Consensus 201 ~l~~a~~~Y 209 (209)
T cd08870 201 KLENALRKY 209 (209)
T ss_pred HHHHHHhcC
Confidence 888888765
No 260
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=66.20 E-value=8.7 Score=45.88 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCcEEEEEEC-------------------CeEEEeeeecCCCCCeeceEEEEEE-eCCCCeEEEEEEeCCC
Q 002193 13 IPAMDQNGYSDPYVRLQLG-------------------RQRFKTKVVRKSLSPSWEEEFSFKV-EDLKDELVISVLDEDK 72 (955)
Q Consensus 13 L~~~d~~g~sDPYv~v~l~-------------------~~k~rTkvi~~t~nP~WnE~F~F~v-~~~~~~L~V~V~D~d~ 72 (955)
+.+.+..+..||-|.+... .+..+|.++.+.+||.|-+.|.+.. -+.-+.|.+.++|.+.
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence 4445566677888776552 2335899999999999999887766 4445789999999774
Q ss_pred ----CCCCceeEeeEeecccccc
Q 002193 73 ----YFNDDFVGFLKIPVSRVFD 91 (955)
Q Consensus 73 ----~~~d~~LG~v~V~L~~l~~ 91 (955)
....+|+|++...+..+..
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccCCcchhcccceeeeehhhhhh
Confidence 3567899999999998864
No 261
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=65.03 E-value=1.8e+02 Score=30.83 Aligned_cols=149 Identities=7% Similarity=-0.030 Sum_probs=81.1
Q ss_pred eeeEEecChhhhhcccccCCCcch-HHHHHHcCCeeeeeccccccCCCCceEEEEEEEecccc---CC--CceEEEEEEE
Q 002193 256 VDQMYVIAPQDLNTLLFSPDSNFP-RTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LI--KATKGFEEQT 329 (955)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~-~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~---~~--k~~~~te~Q~ 329 (955)
..-+.++++++++.+|+...+.+. ++.....++.-++... ++ +. +.|.++... .+ .+. ++ .+.
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id-----~~---~~-i~~~~~p~~~~~~vs~RDf-V~-~~~ 118 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAIS-----DD---VS-VCRTVTPSAAMKIISPRDF-VD-VVL 118 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEec-----CC---EE-EEEEecchhcCCCcCCCce-EE-EEE
Confidence 445668999999999984332333 2222222222222211 22 22 345444332 23 222 11 233
Q ss_pred EEecCCCeEEEEEEEecC-CC-cCCCeeEeEEE-EEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHH
Q 002193 330 YLKADGKVFAILASVSTP-EV-MYGGSFKTELL-FCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRE 406 (955)
Q Consensus 330 ~~~~d~~~~~V~~~~~tp-dV-P~Gd~F~v~~r-y~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke 406 (955)
....++..+++......| .. |--++.+++.+ ++..|-|. +.++++|++.-...+.+.|+ +=+..|.+...+.+.+
T Consensus 119 ~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~-~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~ 196 (208)
T cd08903 119 VKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPV-PGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAE 196 (208)
T ss_pred EEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEEC-CCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHH
Confidence 333333345544433333 44 44577777666 44444333 45778999999999999543 4466677777788877
Q ss_pred HHHHHHHHHhh
Q 002193 407 TYEQFATFLSQ 417 (955)
Q Consensus 407 ~~~~~~~~l~~ 417 (955)
+|..|.+.+++
T Consensus 197 ~~~~Lr~~~~~ 207 (208)
T cd08903 197 FYNNLTKAVKA 207 (208)
T ss_pred HHHHHHHHHhh
Confidence 77777666643
No 262
>PLN02223 phosphoinositide phospholipase C
Probab=64.50 E-value=7.2 Score=46.86 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCCCCchhhhheeeeeeeehh---hHHHHHHHHHHhhcccceeccccCCCCCc-eeEEEEEecCCccCcccccceeEEee
Q 002193 488 LDLPDSIGEFIVCGVLVLQGE---RFLQLISRFMQARKQKEIFEYDAMDEPPS-MLDVEVYDFDGPFNEATSLGHAEINF 563 (955)
Q Consensus 488 ~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~f~~~~~~p~-~~~v~~~d~d~~~~~~~~~g~~~~~~ 563 (955)
.+-||-+-++-+.|+-.=... .|.+-. -.|.|.|.|+|+ +--|-. .|.++|||.|..-+.. -+|++.++|
T Consensus 432 ~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg----~nPvWne~F~F~-i~~PELAlLrf~V~D~D~~~~dd-fiGQ~~LPv 505 (537)
T PLN02223 432 LSKPDLYVRISIAGVPHDEKIMKTTVKNNE----WKPTWGEEFTFP-LTYPDLALISFEVYDYEVSTADA-FCGQTCLPV 505 (537)
T ss_pred CCCCCeEEEEEEeeccCCcceeEEEeCCCC----cCceecceeEEE-EEccCceEEEEEEEecCCCCCCc-EEEEEecch
Confidence 356776666666665332111 111111 258899999996 444443 6899999999865555 899999999
Q ss_pred eecCCCcccceEEecCCcchhhh-ccccccc
Q 002193 564 VKSDISDLADVWIPLQGKLAQAC-QSKLHLR 593 (955)
Q Consensus 564 ~~~~~~~~~~~w~~l~~~~~~~~-~~~~~~~ 593 (955)
. .=..|==++||-.+.|+.. ..+|-+|
T Consensus 506 ~---~Lr~GyR~VpL~~~~g~~l~~~~Ll~~ 533 (537)
T PLN02223 506 S---ELIEGIRAVPLYDERGKACSSTMLLTR 533 (537)
T ss_pred H---HhcCCceeEeccCCCcCCCCCceEEEE
Confidence 7 3456678889987777663 3444444
No 263
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=63.92 E-value=1.1e+02 Score=28.77 Aligned_cols=104 Identities=10% Similarity=-0.038 Sum_probs=51.2
Q ss_pred cccccCChhhheecccCChhHHHHHHHcCccccccCcccccC-CCceeEEEEEEeeecccCCccccCceEEEEeccC-C-
Q 002193 795 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEK-LDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPN-G- 871 (955)
Q Consensus 795 ~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~-~~~~~R~isY~~~~~l~p~g~~vt~~Qqk~~~~d-~- 871 (955)
+.++++|++.+|+++.|..-...++... .. ..+.... ..+..|.+.+. .| .....++...+ .
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~--~~---~~~~~~~~~~g~~~~~~~~-------~g---~~~~~~i~~~~~~~ 70 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAV--AS---CELEGGGPGVGAVRTVTLK-------DG---GTVRERLLALDDAE 70 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCc--ce---EEeecCCCCCCeEEEEEeC-------CC---CEEEEEehhcCccC
Confidence 4568999999999988765333444321 11 1121111 12344444433 12 22233333322 2
Q ss_pred CcEEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEe
Q 002193 872 NGWLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWL 920 (955)
Q Consensus 872 ~~~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~ 920 (955)
..+.+.... .+.|+.+ ....|.|+..+. ++|+|.......-.
T Consensus 71 ~~i~~~~~~--~~~~~~~---~~~~~~~~~~~~--~~t~v~~~~~~~~~ 112 (140)
T cd07821 71 RRYSYRIVE--GPLPVKN---YVATIRVTPEGD--GGTRVTWTAEFDPP 112 (140)
T ss_pred CEEEEEecC--CCCCccc---ceEEEEEEECCC--CccEEEEEEEEecC
Confidence 333332221 1344443 577899998653 57887665554443
No 264
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=63.56 E-value=49 Score=34.69 Aligned_cols=135 Identities=8% Similarity=0.085 Sum_probs=71.2
Q ss_pred eeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccc-cCCCCceEEEEEEEeccccCCCceEEEEEE-EEEecC
Q 002193 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRF-ENGCESLKRDVTYIKAANKLIKATKGFEEQ-TYLKAD 334 (955)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~-~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q-~~~~~d 334 (955)
.-++++++++++.+|+.. ++--|..+..++. +.-+ .....+.|..+.-.+++.=-....+ .....+
T Consensus 49 ~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id-~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~ 116 (197)
T cd08869 49 STEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLD-EDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLP 116 (197)
T ss_pred EEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEec-CCcEEEEEEeeCCCCCCCceEEEEEEEEecCC
Confidence 456688899998877631 2222222222221 1111 1133445554433333211112111 222233
Q ss_pred CCeEEEEEEEecC--CCcCCCeeEe---EEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeehhhhhh---cHHHHH
Q 002193 335 GKVFAILASVSTP--EVMYGGSFKT---ELLFCITPGPELSSGEQSSHLVISWRMNFLQS--TMMKGMIEN---GARSAL 404 (955)
Q Consensus 335 ~~~~~V~~~~~tp--dVP~Gd~F~v---~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~ks--s~~K~~Iek---~a~~G~ 404 (955)
+..|+|......| .+|- ++-++ ...|.|+ +.++++|++.--..+.+.|+ .|+-.+.-. .....|
T Consensus 117 ~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~-----p~~~~~t~vty~~~~Dp~G~iP~wl~N~~~~~~~~~~~~l 190 (197)
T cd08869 117 KGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIE-----PCGSGKSRVTHICRVDLRGRSPEWYNKVYGHLCARELLRI 190 (197)
T ss_pred CCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEE-----ECCCCCeEEEEEEEECCCCCCCceeecchHhHHHHHHHHH
Confidence 4456665555543 6777 65544 4679999 56778999999999999888 365333332 344455
Q ss_pred HHHHH
Q 002193 405 RETYE 409 (955)
Q Consensus 405 ke~~~ 409 (955)
++.|.
T Consensus 191 ~~~~~ 195 (197)
T cd08869 191 RDSFR 195 (197)
T ss_pred Hhhcc
Confidence 55554
No 265
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=62.80 E-value=11 Score=37.43 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred eeeehhhHHHHHHHHH----HhhcccceeccccCCC-CCceeEEEEEecCCccCcccccceeEEeee
Q 002193 503 LVLQGERFLQLISRFM----QARKQKEIFEYDAMDE-PPSMLDVEVYDFDGPFNEATSLGHAEINFV 564 (955)
Q Consensus 503 ~~~~~~~~~~~~~~~~----~~~~~~e~~~f~~~~~-~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~ 564 (955)
|.-.+.|+.+.=.+=. -.+.|.|-|-||.-.+ .=+.+-|+|||+|.-=.. ..||.+.+-.-
T Consensus 43 L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n-~~IG~v~lG~~ 108 (135)
T cd08692 43 MFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRK-HFLGQVWISSD 108 (135)
T ss_pred EEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCC-ceEEEEEECCc
Confidence 3344566644333322 2367889999986542 334888999999974333 37888877653
No 266
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=61.83 E-value=1.1e+02 Score=32.02 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=73.7
Q ss_pred eeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccc--cCCCceEEEEEEEEEecC
Q 002193 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN--KLIKATKGFEEQTYLKAD 334 (955)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~--~~~k~~~~te~Q~~~~~d 334 (955)
-.+.+++++++|..||.+ .+..+..... |.+...-. ..+++ ++.+.|..... .+++.=-....++....
T Consensus 53 ~~~i~~~~~~v~~~l~~d-~~~~~~Wd~~--~~~~~~i~--~~d~~---~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~- 123 (208)
T cd08868 53 TGVLDCPAEFLYNELVLN-VESLPSWNPT--VLECKIIQ--VIDDN---TDISYQVAAEAGGGLVSPRDFVSLRHWGIR- 123 (208)
T ss_pred EEEEcCCHHHHHHHHHcC-ccccceecCc--ccceEEEE--EecCC---cEEEEEEecCcCCCcccccceEEEEEEEec-
Confidence 346688899998776643 2222222111 11111111 11112 34443333322 33322112222344343
Q ss_pred CCeEEEE-EEEecCCCcCCCe-eE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeehhhhhhcHHHHHHHH
Q 002193 335 GKVFAIL-ASVSTPEVMYGGS-FK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQS--TMMKGMIENGARSALRET 407 (955)
Q Consensus 335 ~~~~~V~-~~~~tpdVP~Gd~-F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~ks--s~~K~~Iek~a~~G~ke~ 407 (955)
++.|+|. .++.-|.+|-..- -+ ....|.|++-+ .++++|++.....+...|+ .|+ +.+.+..++-++
T Consensus 124 ~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~---~~~~~t~v~~~~~~Dp~G~iP~~l---vN~~~~~~~~~~ 197 (208)
T cd08868 124 ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLP---NNPNKCNFTWLLNTDLKGWLPQYL---VDQALASVLLDF 197 (208)
T ss_pred CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECC---CCCCceEEEEEEEECCCCCCccee---eehhhHHHHHHH
Confidence 3556554 4444467775544 33 34678999522 2557899998899998887 355 555555666555
Q ss_pred HHHHHHHHh
Q 002193 408 YEQFATFLS 416 (955)
Q Consensus 408 ~~~~~~~l~ 416 (955)
+..+.+.+.
T Consensus 198 ~~~Lr~~~~ 206 (208)
T cd08868 198 MKHLRKRIA 206 (208)
T ss_pred HHHHHHHHh
Confidence 555555443
No 267
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=61.58 E-value=28 Score=36.61 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=37.3
Q ss_pred EEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCC-CCC---ceeEeeEeec
Q 002193 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-FND---DFVGFLKIPV 86 (955)
Q Consensus 34 k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~-~~d---~~LG~v~V~L 86 (955)
.++|.|...+.+|.|+|++.+.++. ....|.+++++.... .+| ..+|-+-+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 4788888889999999999999932 356899998875431 112 3455555554
No 268
>PLN02952 phosphoinositide phospholipase C
Probab=60.34 E-value=10 Score=46.45 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=43.7
Q ss_pred hhcccceeccccCCCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcch
Q 002193 520 ARKQKEIFEYDAMDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 583 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~ 583 (955)
.|.|.|.|+|.... |- +.+.++|||+|..-+.. -+|++.|.+-.- ..|--|+||-.+.|
T Consensus 525 nPvWnE~F~F~i~~-PELAllrf~V~D~D~~~~dd-fiGq~~lPv~~L---r~GyR~VpL~~~~G 584 (599)
T PLN02952 525 YPAWNEEFSFPLTV-PELALLRIEVREYDMSEKDD-FGGQTCLPVSEL---RPGIRSVPLHDKKG 584 (599)
T ss_pred CcccCCeeEEEEEc-CCccEEEEEEEecCCCCCCC-eEEEEEcchhHh---cCCceeEeCcCCCC
Confidence 59999999996543 32 57999999999854444 799999998753 34456999964444
No 269
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=58.75 E-value=35 Score=32.77 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=34.0
Q ss_pred eeEeeecccCeEEEeecceEEEEecCCCceeEEEEeccccccccc
Q 002193 649 CHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQV 693 (955)
Q Consensus 649 Cal~r~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k 693 (955)
......+..+|++.|-.+-+-||.+--. +--+.|||++|+.|..
T Consensus 15 ats~~g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a 58 (118)
T PF06115_consen 15 ATSYLGLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIA 58 (118)
T ss_pred eEEEecccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEE
Confidence 3344467789999999999999986432 4557899999998864
No 270
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=56.02 E-value=1.8e+02 Score=28.32 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=40.8
Q ss_pred CCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeec--ccchhhhhhhhHHhHHHHHHHHHHHHHHhh
Q 002193 884 GVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKS--TRHQKRITKNIVSNLEDRLRVKLSVIEKEF 952 (955)
Q Consensus 884 dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks--t~~K~~Iek~t~~~~~~~~k~l~~~~~kei 952 (955)
+.+.+....+...|.++.. +.+|+|.+...+...+. .+.+..|++-+ ++.++.+++-+++.+
T Consensus 81 ~~~~~g~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~----~~~~~~~~~~l~~~~ 144 (146)
T cd07823 81 DARGQGTAEATVTLRLSPA---GGGTRVTVDTDLALTGKLAQFGRGGIGDVA----GRLLAQFAANLEARL 144 (146)
T ss_pred cCCCcceEEEEEEEEEEec---CCcEEEEEEEEEEEeeEhHHhChhHHHHHH----HHHHHHHHHHHHHHh
Confidence 3555566678888889872 26899999999988773 34556666544 444555555555543
No 271
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=55.72 E-value=1.9e+02 Score=29.78 Aligned_cols=143 Identities=7% Similarity=-0.063 Sum_probs=73.9
Q ss_pred cccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeeecccCCccc-cCceEEEEeccCCCc
Q 002193 795 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGE-VTSTQQKSPLPNGNG 873 (955)
Q Consensus 795 ~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~g~~-vt~~Qqk~~~~d~~~ 873 (955)
..+++++++++++++.|-+....+.... .+..+ .+ ..+.. ..+.|..-....|..+- .+.........+.+.
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~--~~~~v--ie--~~~~~-~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPNC--KESRV--LK--RTDDN-ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhhc--ceEEE--ee--cCCCC-cEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 4568999999999987766444554432 22211 11 11111 23344321111122111 111122222222445
Q ss_pred EEEEEEEeeCCCCCC-C---ceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHH
Q 002193 874 WLVEEVMTLHGVPLG-D---YFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIE 949 (955)
Q Consensus 874 ~vve~~~~~~dVPyG-D---~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~l~~~~~ 949 (955)
+++......+++|-. + .+.....|.|+..+ +++|+|.....+++.+ .+-+..|.+.+. .....+++.++
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~--~~~t~vt~~~~~dp~g-~iP~~lv~~~~~----~~~~~~l~~l~ 191 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG--NGKTRVTYQAYADPGG-SIPGWLANAFAK----DAPYNTLENLR 191 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECC--CCeEEEEEEEEeCCCC-CCCHHHHHHHHH----HHHHHHHHHHH
Confidence 555544343445633 2 35667789999975 4889999999999954 455555555543 34445555555
Q ss_pred Hh
Q 002193 950 KE 951 (955)
Q Consensus 950 ke 951 (955)
++
T Consensus 192 ~~ 193 (195)
T cd08876 192 KQ 193 (195)
T ss_pred Hh
Confidence 54
No 272
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.54 E-value=49 Score=39.99 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=52.9
Q ss_pred hhhcccC-CCCCCeeEEEEEeeEeeecccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCccc
Q 002193 630 AFQKLFG-LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 699 (955)
Q Consensus 630 ~F~~lF~-lp~~E~Li~~f~Cal~r~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~~ 699 (955)
.....|. ||-+......|-|-+.. ..-|.|+||+=.|.|.|.--+..--+-+||.-|+.|+|..++.+
T Consensus 29 ~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~ 97 (717)
T KOG4471|consen 29 NLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATS 97 (717)
T ss_pred cccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCcccc
Confidence 3677787 55454445567787776 77899999999999999766655677899999999999876554
No 273
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=52.71 E-value=1.6e+02 Score=29.72 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=51.8
Q ss_pred EEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEee-cccchhhhhhhhHHhHHHHH
Q 002193 879 VMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLK-STRHQKRITKNIVSNLEDRL 941 (955)
Q Consensus 879 ~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~K-st~~K~~Iek~t~~~~~~~~ 941 (955)
++.+..+=|.+++.|+-+-.+...+.+|+.|.+.-.+.|.-.+ ...+.++||+-.++..++.+
T Consensus 77 ~~~t~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na 140 (157)
T PF04707_consen 77 TTKTRNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNA 140 (157)
T ss_pred EEEEEEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999888999999999999655 34589999987776665554
No 274
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=52.56 E-value=16 Score=36.03 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=24.8
Q ss_pred CCceeEEEEEecCCccCcccccceeEEeeee
Q 002193 535 PPSMLDVEVYDFDGPFNEATSLGHAEINFVK 565 (955)
Q Consensus 535 ~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~ 565 (955)
.|.++.+.|||.|. |.....||.++++...
T Consensus 91 ~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~ 120 (133)
T cd08374 91 IPPKLTLQVWDNDK-FSPDDFLGSLELDLSI 120 (133)
T ss_pred cCcEEEEEEEECcc-cCCCCcceEEEEEhhh
Confidence 47899999999999 5555599999998764
No 275
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.30 E-value=39 Score=34.81 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=35.1
Q ss_pred EeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCCCC-----CCCceeEeeEeeccc
Q 002193 36 KTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-----FNDDFVGFLKIPVSR 88 (955)
Q Consensus 36 rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d~~-----~~d~~LG~v~V~L~~ 88 (955)
-++++..+.+|.|+|++.+.++. ....|.+++++...- .....+|-+-+||-+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444899999999999932 356899999986632 123456666665543
No 276
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=52.13 E-value=42 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred EeeEeeecccCeEEEeecce--EEEEecCCCceeEEEEeccccccccccCC
Q 002193 648 TCHLKRKMLLQGRLFLSARI--IGFHANLFGHKTNFFFLWEDIEDIQVLPP 696 (955)
Q Consensus 648 ~Cal~r~~~~~GrlYiS~~~--icF~S~~~g~~tk~~Ip~~dI~~I~k~~~ 696 (955)
.|.+++.- |.|||++++ +-+--+--+-...+.||+.+|...+..+.
T Consensus 6 ~~~yKK~~---G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~ 53 (79)
T PF08567_consen 6 AASYKKKD---GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPE 53 (79)
T ss_dssp EEEETTEE---EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--T
T ss_pred eEEEEcCC---cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCC
Confidence 45554433 999999999 99887644434479999999999988874
No 277
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=52.07 E-value=2.9e+02 Score=28.54 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=46.0
Q ss_pred CCCeEEEE-EEEecCCCc-CCCeeE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHH
Q 002193 334 DGKVFAIL-ASVSTPEVM-YGGSFK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (955)
Q Consensus 334 d~~~~~V~-~~~~tpdVP-~Gd~F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~ 408 (955)
.++.|+|. .++..|++| -.++-+ ....|+|+ +.+++.|++.....++..++. =+..+..-+..+.-..+
T Consensus 120 ~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~-----p~~~~~t~vt~~~~~D~~G~i-P~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 120 VDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIE-----PLGNGPSKVTWVSHADLKGWL-PHWLVRSLIKSGLAEFA 193 (206)
T ss_pred CCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEE-----ECCCCCeEEEEEEEEecCCCc-cceeehhhhhhhHHHHH
Confidence 45556654 466667777 344444 45689999 455577999999999998872 23333333333333333
Q ss_pred HHHHHHHhh
Q 002193 409 EQFATFLSQ 417 (955)
Q Consensus 409 ~~~~~~l~~ 417 (955)
..+...|++
T Consensus 194 ~~~~~~~~~ 202 (206)
T smart00234 194 KTWVATLQK 202 (206)
T ss_pred HHHHHHHHH
Confidence 444444443
No 278
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=49.31 E-value=1.5e+02 Score=29.90 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=34.6
Q ss_pred CCcEEEEEEEeeCCCCCC-CceEEEEE---EEEEeCCCCCCccEEEEEEEEEEeecc
Q 002193 871 GNGWLVEEVMTLHGVPLG-DYFNLHLR---YQVEDSPSRPKGCLAQVYLGVAWLKST 923 (955)
Q Consensus 871 ~~~~vve~~~~~~dVPyG-D~F~V~~R---~~i~~~s~~~~~c~l~V~~~V~w~Kst 923 (955)
+..+++......+.+|-. ++-+.+.. |.|+..+ +++|++.....++-.++.
T Consensus 114 ~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~--~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 114 GTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD--PGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC--CCCEEEEEEEeeCCCCCc
Confidence 334444444444446655 66666654 8999973 589999999999998754
No 279
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=49.17 E-value=27 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=29.9
Q ss_pred CeEEEeecceEEEEecCCCceeEEEEecccccccc
Q 002193 658 QGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQ 692 (955)
Q Consensus 658 ~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~ 692 (955)
-|+|+||.-.+..||..-. ...++|||-.|..|+
T Consensus 20 ~G~l~VTNlRiiW~s~~~~-~~NlSIgy~~i~~i~ 53 (55)
T smart00683 20 LGVFFVTNLRLVWHSDTNP-RFNISVGYLQITNVR 53 (55)
T ss_pred eeEEEEEeeEEEEEeCCCC-ceEEEEcceeEEEEE
Confidence 3999999999999998764 788999999998775
No 280
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=48.00 E-value=3.3e+02 Score=28.88 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=46.6
Q ss_pred CeE-EEEEEEecCCCcCCCe-eEe---EEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHHHH
Q 002193 336 KVF-AILASVSTPEVMYGGS-FKT---ELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQ 410 (955)
Q Consensus 336 ~~~-~V~~~~~tpdVP~Gd~-F~v---~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~~~ 410 (955)
+.| ++..++..|++|-..- -++ ...|.|+ +.++++|++.....+...++. =+.++.+.+....-.++..
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~-----p~~~~~t~vt~~~~~Dp~G~I-P~~lvN~~~~~~~~~~l~~ 195 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIR-----PTGPKGCTLTYVTQNDPKGSL-PKWVVNKATTKLAPKVMKK 195 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEE-----ECCCCCEEEEEEEecCCCCCc-CHHHHHHHHHHHhHHHHHH
Confidence 554 4566677788986654 333 3468888 456788999999999988862 1222222333333344555
Q ss_pred HHHHHhhcc
Q 002193 411 FATFLSQTI 419 (955)
Q Consensus 411 ~~~~l~~~~ 419 (955)
|.+.+.++-
T Consensus 196 l~k~~~~y~ 204 (222)
T cd08871 196 LHKAALKYP 204 (222)
T ss_pred HHHHHHHHH
Confidence 555555553
No 281
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.67 E-value=23 Score=33.49 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=43.6
Q ss_pred ecccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCcccCCCCCeEEEEEeeCCCcCcCCCceeeccCCceEE
Q 002193 654 KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKF 733 (955)
Q Consensus 654 ~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~k~ 733 (955)
.+.-+|++-|-..-+-||-+--- +.-+.|||++|.+|-..- .++ .- .++-+|.++++| +|
T Consensus 20 g~~~~GkiliGDkgfEFYn~~nv-~k~iqipWs~i~~v~vsv-------------s~K-K~---~~~f~i~td~~g--k~ 79 (122)
T COG4687 20 GFAEYGKILIGDKGFEFYNDRNV-EKFIQIPWSEINEVDVSV-------------SLK-KW---GRQFSIFTDTQG--KV 79 (122)
T ss_pred ehhhcCeEEEcccceeecCCCCh-hheeEecHHHhheeheee-------------hhh-hh---cceEEEEEcCCc--eE
Confidence 45567999999999999876432 566789999998664322 011 11 135566667666 79
Q ss_pred Eeccc
Q 002193 734 HFHSF 738 (955)
Q Consensus 734 ~F~sF 738 (955)
.|+|=
T Consensus 80 ~FaSk 84 (122)
T COG4687 80 RFASK 84 (122)
T ss_pred EEEeC
Confidence 99864
No 282
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=47.29 E-value=3.7e+02 Score=28.44 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=69.0
Q ss_pred ccccccCChhhhe-ecccCChhHHHHHHHcCccccccCcccc-cCCCceeEEEEEEeeecccCCccccCce---EEEEec
Q 002193 794 YSSVLPVPMSFFM-ELFGGGELERAVMEKAGCVSYSCSSWES-EKLDVYERQIYYRFDKCISRYRGEVTST---QQKSPL 868 (955)
Q Consensus 794 ~~~~~p~s~~~~f-~lF~d~~~~~~~~~k~g~~d~~~s~W~~-~~~~~~~R~isY~~~~~l~p~g~~vt~~---Qqk~~~ 868 (955)
...++++|++.+| .+|.|......+ |.++..-+- ...+... .+.|.+..+ ..++.+.+. -.++..
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~~~~~W-------~~~~~~~~vi~~~~~~~-~i~Y~v~~p--~~~~pv~~RDfV~~r~~~ 122 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPEKMVLW-------NKTVSACQVLQRVDDNT-LVSYDVAAG--AAGGVVSPRDFVNVRRIE 122 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChhhcccc-------CccchhhhheeeccCCc-EEEEEEccc--cccCCCCCCceEEEEEEE
Confidence 3567899999998 578765421111 111111110 1111122 344643322 122233322 123333
Q ss_pred cCCCcEEEEEEEeeC-CCC-CCCceEEE---EEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHH
Q 002193 869 PNGNGWLVEEVMTLH-GVP-LGDYFNLH---LRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDR 940 (955)
Q Consensus 869 ~d~~~~vve~~~~~~-dVP-yGD~F~V~---~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~ 940 (955)
.++++|++-.....| .+| .-++-+++ +.|.+...+.++++|++.-.+.++..+ .+=+..|.+...+..-+.
T Consensus 123 ~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~ 198 (209)
T cd08906 123 RRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEF 198 (209)
T ss_pred ecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHH
Confidence 456666654444444 444 45666666 556666643456899999888888876 444555555544333333
No 283
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=44.97 E-value=3e+02 Score=29.22 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=48.5
Q ss_pred cCCCcEEEEEEEeeC-CC-CCCCceEEE---EEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHH
Q 002193 869 PNGNGWLVEEVMTLH-GV-PLGDYFNLH---LRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRV 943 (955)
Q Consensus 869 ~d~~~~vve~~~~~~-dV-PyGD~F~V~---~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~ 943 (955)
.+++.|++-.....| .. |=.++.+.+ +-|.+++.+.+|+.|++..++.+++++ -+=|..|++..-+.+.+-+..
T Consensus 120 ~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG-~lP~~vv~~~~~~~~~~f~~~ 198 (204)
T cd08904 120 YEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRG-NLSRSVIEKTMPTNLVNLILD 198 (204)
T ss_pred eCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCC-CCCHHHHHHHhHHHHHHHHHH
Confidence 356677765444443 43 445655554 559999998878899999999999864 445677776655444444433
No 284
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.91 E-value=2.5e+02 Score=27.38 Aligned_cols=65 Identities=8% Similarity=0.115 Sum_probs=44.7
Q ss_pred EEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeee--eeehhhhhhcHHHHHHHHHHHHH
Q 002193 342 ASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQS--TMMKGMIENGARSALRETYEQFA 412 (955)
Q Consensus 342 ~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~ks--s~~K~~Iek~a~~G~ke~~~~~~ 412 (955)
.+....+.+.+....+.+.|.++ + .+..|+|.+...+...+. .+++.+|++-+..-+.+.++.+.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~-----~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~ 141 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLS-----P-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLE 141 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEE-----e-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHH
Confidence 33455567777777899999999 3 346799999988887776 46777777766655544444433
No 285
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=43.67 E-value=64 Score=33.52 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred eEEEeeeecCCCCCeeceEEEEEEeC---CCCeEEEEEEeCC
Q 002193 33 QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (955)
Q Consensus 33 ~k~rTkvi~~t~nP~WnE~F~F~v~~---~~~~L~V~V~D~d 71 (955)
....|.|...+.+|.|+|++.+.++- ....|.+++++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 34778888899999999999999932 3468999998855
No 286
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=43.32 E-value=2.1e+02 Score=30.00 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=35.3
Q ss_pred CcEEEEEEEee-CCCCCC-CceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeecc
Q 002193 872 NGWLVEEVMTL-HGVPLG-DYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKST 923 (955)
Q Consensus 872 ~~~vve~~~~~-~dVPyG-D~F~V---~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst 923 (955)
+.+++...... +..|-. ++-++ ...|.|++.+.++++|.+...+.++..++.
T Consensus 125 ~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i 181 (208)
T cd08868 125 NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL 181 (208)
T ss_pred CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC
Confidence 55655443333 456644 44444 478999998655689999999999998854
No 287
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=43.15 E-value=4.2e+02 Score=27.86 Aligned_cols=148 Identities=6% Similarity=-0.015 Sum_probs=79.4
Q ss_pred cccc-cCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeeecccCCccccCceEEEEeccCCCc
Q 002193 795 SSVL-PVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNG 873 (955)
Q Consensus 795 ~~~~-p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~g~~vt~~Qqk~~~~d~~~ 873 (955)
..+| +++++.|++++.|..+...+....-...+ -+.++. ...+-+.|...-|. |...----.+.+......+.
T Consensus 55 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~----le~~~~-~~~~i~y~~~~~P~-P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 55 RGVFEDCTPELLRDFYWDDEYRKKWDETVIEHET----LEEDEK-SGTEIVRWVKKFPF-PLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEE----EEecCC-CCcEEEEEEEECCC-cCCCceEEEEEEEEEcCCCE
Confidence 3457 57999999998887766655554321111 111111 01333444432222 22221111122332332444
Q ss_pred EEEE-EEEeeCCCCCCCceEE---EEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHH
Q 002193 874 WLVE-EVMTLHGVPLGDYFNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIE 949 (955)
Q Consensus 874 ~vve-~~~~~~dVPyGD~F~V---~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~l~~~~~ 949 (955)
+++. ....-+.+|-.++-+| ..+|.|+....++++|.+.+.+..+- +..+=+..+...+..+.-..++.|-..+.
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4443 3434458887655544 47899998632457888888888876 44455566666666666666666655554
No 288
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=43.05 E-value=3.2e+02 Score=28.87 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=39.9
Q ss_pred CcEEEEEEEeeCCCC-CCCceE---EEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHH
Q 002193 872 NGWLVEEVMTLHGVP-LGDYFN---LHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVS 935 (955)
Q Consensus 872 ~~~vve~~~~~~dVP-yGD~F~---V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~ 935 (955)
+.+++......+..| --++-+ ..+.|.|++.+.++++|++.-.+.++..++ .=+..|.+...+
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~ 193 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQ 193 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHH
Confidence 334344444444544 345544 457899999875568999999999998775 444455554443
No 289
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=42.20 E-value=80 Score=33.03 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=31.8
Q ss_pred eEEEeeeecCCCCCeeceEEEEEEe---CCCCeEEEEEEeCC
Q 002193 33 QRFKTKVVRKSLSPSWEEEFSFKVE---DLKDELVISVLDED 71 (955)
Q Consensus 33 ~k~rTkvi~~t~nP~WnE~F~F~v~---~~~~~L~V~V~D~d 71 (955)
....|.|...+.+|.|+|++.+.++ .....|.+++++..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 3578888888999999999999983 23568999999865
No 290
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=41.33 E-value=2.4e+02 Score=32.15 Aligned_cols=112 Identities=13% Similarity=0.242 Sum_probs=72.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCC--eeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeE
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSP--SWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~~~k~rTkvi~~t~nP--~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG 80 (955)
|-|.|.+-.++. -...-|+.+..|+...+|..+.-+..- .-.+.....+..-+.+|+|.||-... .+..-||
T Consensus 60 LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hIg 133 (508)
T PTZ00447 60 LLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHIG 133 (508)
T ss_pred EEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEEE
Confidence 444554444442 235679999999888888665543332 23344555555566799999998776 4566899
Q ss_pred eeEeecccccccCCCCCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 81 ~v~V~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
.+.+.+..-.- +..-+...||-+... + ...++|.|++.=.
T Consensus 134 dI~InIn~dII-dk~FPKnkWy~c~kD-G----q~~cRIqLSFhKL 173 (508)
T PTZ00447 134 QIKIDINASVI-SKSFPKNEWFVCFKD-G----QEICKVQMSFYKI 173 (508)
T ss_pred EEEecccHHHH-hccCCccceEEEecC-C----ceeeeEEEEehhh
Confidence 99998875332 123346899999533 2 4568888887543
No 291
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=40.76 E-value=2.7e+02 Score=28.64 Aligned_cols=81 Identities=10% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCCe-EEEEEEEecCCCcC--CCeeEeEE---EEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHH
Q 002193 334 DGKV-FAILASVSTPEVMY--GGSFKTEL---LFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRET 407 (955)
Q Consensus 334 d~~~-~~V~~~~~tpdVP~--Gd~F~v~~---ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~ 407 (955)
.++. +++..++..|+.|- .++-++++ .|+|+ +.+++.|++.....++-.++. -+.++..-+.+++-++
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~-----~~~~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~ 192 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIR-----PLGDGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNF 192 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEE-----EETTCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEE-----EccCCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHH
Confidence 4444 55566888888885 67666554 57899 566688999888888887753 2344444556677777
Q ss_pred HHHHHHHHhhccC
Q 002193 408 YEQFATFLSQTIT 420 (955)
Q Consensus 408 ~~~~~~~l~~~~k 420 (955)
++.+.+.|+++-+
T Consensus 193 ~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 193 LKNLRKALKKQKK 205 (206)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhcc
Confidence 7888888887643
No 292
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=40.41 E-value=38 Score=42.82 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=75.8
Q ss_pred CCcEEEEEECCeE-EEeeeecCC-CCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCc
Q 002193 22 SDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (955)
Q Consensus 22 sDPYv~v~l~~~k-~rTkvi~~t-~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~ 99 (955)
.++|+.+.+.... .+|....+. .+|.|.+.|..........+.+.+-+.+.++....+|.+.+++..+..+ ....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~---~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG---HRIG 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc---cccc
Confidence 4899999886543 667777665 7899999988777777788999999988877678999999999998753 3467
Q ss_pred EEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 100 ~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
.|+++...+++.. ...-.+.+++.|.+.
T Consensus 215 ~~~~Il~~d~~~~-~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 215 GWFPILDNDGKPH-QKGSNESLRLGFTPM 242 (887)
T ss_pred ceeeeeccCCccc-cCCcccceEEeeEee
Confidence 8999886655321 122345566666554
No 293
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=37.60 E-value=2.9e+02 Score=27.70 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=73.0
Q ss_pred ccccCChhhheecccCCh-hHHHHH-HHcCccccccCcccccCCCceeEEEEEEeeecccCCccccCceEEEEeccCCCc
Q 002193 796 SVLPVPMSFFMELFGGGE-LERAVM-EKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPNGNG 873 (955)
Q Consensus 796 ~~~p~s~~~~f~lF~d~~-~~~~~~-~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~g~~vt~~Qqk~~~~d~~~ 873 (955)
.+++++++.+|..|.... +..+++ +.-...++--++| ..+|..|.++|.. ++.....-+|....|.+.
T Consensus 10 ~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdg---g~gGSIk~~~f~~-------~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 10 VEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDG---GPGGSIKKWTFGP-------GGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp EEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSS---STTT-EEEEEEET-------TSSEEEEEEEEEEEETTT
T ss_pred EEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCC---CCCCeEEEEEecC-------CCCcceeEEEEEeecCCC
Confidence 457899999999877622 223322 2223345556777 4558999999992 333333345555556554
Q ss_pred EEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhh-hHHhHHHHHHHHHHHHHHhh
Q 002193 874 WLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKN-IVSNLEDRLRVKLSVIEKEF 952 (955)
Q Consensus 874 ~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~-t~~~~~~~~k~l~~~~~kei 952 (955)
..+.-++- .|=+.++|.+-.....+...+ +++|.++.. ++|-+.. +.. .-++..+.+..|+..++..+
T Consensus 80 ~~~~y~vi-EGd~l~~~~~~~~~~~~~~~~--~g~~v~k~t--~~Ye~~~------~~~~~p~~~~~~~~~~~K~ieayL 148 (151)
T PF00407_consen 80 KTITYTVI-EGDVLGDYKSFKSTIQKIPKG--DGGCVVKWT--IEYEKKG------EDVPPPEKYLDFAVGMFKAIEAYL 148 (151)
T ss_dssp TEEEEEEE-EETTGTTTEEEEEEEEEEEET--TSCEEEEEE--EEEEESS------TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEE-eccccccEEEEEEEEEecCCC--CCceEEEEE--EEEEecC------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 44433322 233556666666666666533 355765554 3454421 111 23334444666777666655
Q ss_pred h
Q 002193 953 A 953 (955)
Q Consensus 953 ~ 953 (955)
+
T Consensus 149 l 149 (151)
T PF00407_consen 149 L 149 (151)
T ss_dssp H
T ss_pred h
Confidence 4
No 294
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=35.58 E-value=4.1e+02 Score=27.95 Aligned_cols=129 Identities=11% Similarity=0.063 Sum_probs=68.0
Q ss_pred ccccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEE-eeecccCCccc--cCceEEEEeccC
Q 002193 794 YSSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYR-FDKCISRYRGE--VTSTQQKSPLPN 870 (955)
Q Consensus 794 ~~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~-~~~~l~p~g~~--vt~~Qqk~~~~d 870 (955)
....++++++.+..++.+-++...+...+.... .+ ...+. ...+.|. +..|. |++.- +...+....+.+
T Consensus 50 ~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~-~l-----~~~~~-~~~v~y~~~~~Pw-Pv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 50 MEGEIDGPLFNLLALLNEVELYKTWVPFCIRSK-KV-----KQLGR-ADKVCYLRVDLPW-PLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEecCChhHeEEEEehhhhHhhhcccceeeE-EE-----eecCC-ceEEEEEEEeCce-EecceEEEEEEEEEeeecc
Confidence 456789999999999888776655544321111 01 11111 1234444 22222 22221 111122222324
Q ss_pred CCcEEEEEEEeeC----------CCCCCC-c----eEEEEEEEEEeCCCCCCccEEEEEEEEEEeec---ccchhhhhhh
Q 002193 871 GNGWLVEEVMTLH----------GVPLGD-Y----FNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKS---TRHQKRITKN 932 (955)
Q Consensus 871 ~~~~vve~~~~~~----------dVPyGD-~----F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks---t~~K~~Iek~ 932 (955)
.+.++|......+ ++|-.+ - -.+...|.|++.+ +++|++...+.++..++ .|+-..+.+.
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~--~~~t~v~~~~~~DP~g~~IP~~liN~~~k~ 199 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS--PTKCYLRFVANVDPKMSLVPKSLLNFVARK 199 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC--CCCeEEEEEEEcCCCcccCCHHHHHHHHHH
Confidence 4455554333221 156554 2 3467789999965 48999999999998877 4444444433
No 295
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.09 E-value=14 Score=45.30 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCCcEEEEEECCeE-EEeeeecCCCCCeeceEEEEEEeCCCCeEEEEEEeCCCCCCCceeEeeEeecccccccCCCCCCc
Q 002193 21 YSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (955)
Q Consensus 21 ~sDPYv~v~l~~~k-~rTkvi~~t~nP~WnE~F~F~v~~~~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~~~~~ 99 (955)
.-+||+-+.+.-.. ..+.+.+.+..|.|+++|...+.. ...+.|.|+.......+.+.-.+.+...++.. ......
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~--~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQKL--LALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHHH--Hhhhhh
Confidence 36899988886433 355557779999999999999743 34677788876644444333333333333322 111246
Q ss_pred EEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 100 ~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
.|..+. ..|+++..+.+...
T Consensus 104 ~w~~~~---------~~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 104 LWVLIE---------ELGTLLKPAALTGT 123 (694)
T ss_pred hccccc---------cccceeeeecccCc
Confidence 787755 34888888777543
No 296
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=34.97 E-value=4.7e+02 Score=26.10 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=63.5
Q ss_pred eeeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEecC
Q 002193 255 LVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKAD 334 (955)
Q Consensus 255 ~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~d 334 (955)
...-+++++++++..+|+..+ ....... .+.+...-.. ...+ .......|..+.-....+.-+.. -.....+
T Consensus 42 k~~~~i~~~~~~v~~~l~d~~--~~~~w~~--~~~~~~vl~~--~~~~-~~i~~~~~~~p~p~~~Rdfv~~~-~~~~~~~ 113 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDID--LRKKWDK--NFEEFEVIEE--IDEH-TDIIYYKTKPPWPVSPRDFVYLR-RRRKLDD 113 (193)
T ss_pred EEEEEECCCHHHHHHHHhCCc--hhhchhh--cceEEEEEEE--eCCC-eEEEEEEeeCCCccCCccEEEEE-EEEEcCC
Confidence 345677889999999998643 3322211 2222222111 1111 11111222222111122221211 1111223
Q ss_pred CCeEEEEEEEecCCCcCC-CeeEeEEE---EEEecCCCCCCCCCccEEEEEEEEEEeee
Q 002193 335 GKVFAILASVSTPEVMYG-GSFKTELL---FCITPGPELSSGEQSSHLVISWRMNFLQS 389 (955)
Q Consensus 335 ~~~~~V~~~~~tpdVP~G-d~F~v~~r---y~i~~~~~~~~~~~~~~l~Vs~~i~w~ks 389 (955)
+..+++..++..+++|-. ++-+.++. |+|+ +.++++|++.....++-.++
T Consensus 114 ~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~-----~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 114 GTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIE-----PLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEE-----ECCCCCEEEEEEEeeCCCCC
Confidence 555666666666667765 66666654 8899 45789999999999998775
No 297
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=33.14 E-value=4.9e+02 Score=27.60 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=77.0
Q ss_pred eeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccC---C--CceEEEEEEEEE
Q 002193 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKL---I--KATKGFEEQTYL 331 (955)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~---~--k~~~~te~Q~~~ 331 (955)
.-+.+++++++|.+||.+. ...+. ..-+.+...-. .-..+ + .|+|.+..+.+ + .+. +.. +.-.
T Consensus 51 egvi~~~~e~v~~~l~~~e--~r~~W--d~~~~~~~iie--~Id~~---T-~I~~~~~~~~~~~~vspRDf-V~v-r~~~ 118 (204)
T cd08904 51 EGIIPESPAKLIQFMYQPE--HRIKW--DKSLQVYKMLQ--RIDSD---T-FICHTITQSFAMGSISPRDF-VDL-VHIK 118 (204)
T ss_pred EEEecCCHHHHHHHHhccc--hhhhh--cccccceeeEE--EeCCC---c-EEEEEecccccCCcccCceE-EEE-EEEE
Confidence 4567899999999987632 22111 11222222222 11222 1 46676544322 2 222 221 2222
Q ss_pred ecCCCeEEEEE-EEecCCCc-CCCeeE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHH
Q 002193 332 KADGKVFAILA-SVSTPEVM-YGGSFK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRE 406 (955)
Q Consensus 332 ~~d~~~~~V~~-~~~tpdVP-~Gd~F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke 406 (955)
+.+++.|++.. ++.-|..| --++.+ .-+-|.|.| +...++.|+|.....+.++| -+=|..|++...+.|-+
T Consensus 119 r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~p---l~~~p~~t~l~~~~~~DlkG-~lP~~vv~~~~~~~~~~ 194 (204)
T cd08904 119 RYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSP---LPENPAYSKLVMFVQPELRG-NLSRSVIEKTMPTNLVN 194 (204)
T ss_pred EeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEE---CCCCCCceEEEEEEEeCCCC-CCCHHHHHHHhHHHHHH
Confidence 33667777654 44345554 344443 345688884 23455689999999988764 45677888877777755
Q ss_pred HHHHHHHH
Q 002193 407 TYEQFATF 414 (955)
Q Consensus 407 ~~~~~~~~ 414 (955)
++..+.+.
T Consensus 195 f~~~~~~~ 202 (204)
T cd08904 195 LILDAKDG 202 (204)
T ss_pred HHHHHHHh
Confidence 55554443
No 298
>PLN02230 phosphoinositide phospholipase C 4
Probab=32.62 E-value=44 Score=41.07 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred hhcccceeccccCCCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhh
Q 002193 520 ARKQKEIFEYDAMDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA 585 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~ 585 (955)
.|.|.|.|+|... -|- +.|.++|||.|..=+.. -+|++.|.|.. =..|==.|||-.+.|..
T Consensus 524 nP~Wneef~F~l~-vPELAllRf~V~d~d~~~~dd-fiGQ~~lPv~~---Lr~GyR~V~L~~~~G~~ 585 (598)
T PLN02230 524 TPIWNKEFIFPLA-VPELALLRVEVHEHDINEKDD-FGGQTCLPVSE---IRQGIHAVPLFNRKGVK 585 (598)
T ss_pred CCccCCeeEEEEE-cCceeEEEEEEEECCCCCCCC-EEEEEEcchHH---hhCccceEeccCCCcCC
Confidence 5889999999544 343 79999999999854444 79999999874 34555677887666655
No 299
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=31.51 E-value=40 Score=32.03 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHhhcccceeccccCCCCCceeEEEEEecCCc
Q 002193 518 MQARKQKEIFEYDAMDEPPSMLDVEVYDFDGP 549 (955)
Q Consensus 518 ~~~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~ 549 (955)
-|.+.|.|.|+|+. | ---.+.++|||=.+.
T Consensus 42 srnd~WnE~F~i~V-d-k~nEiel~VyDk~~~ 71 (109)
T cd08689 42 SRNDRWNEDFEIPV-E-KNNEEEVIVYDKGGD 71 (109)
T ss_pred CCCCcccceEEEEe-c-CCcEEEEEEEeCCCC
Confidence 48899999999955 5 477899999998764
No 300
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=31.02 E-value=2.6e+02 Score=29.75 Aligned_cols=105 Identities=11% Similarity=0.020 Sum_probs=60.3
Q ss_pred HHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEE---ecCCCeEEEEEEEecCCCcCC-C--ee
Q 002193 282 WAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYL---KADGKVFAILASVSTPEVMYG-G--SF 355 (955)
Q Consensus 282 ~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~---~~d~~~~~V~~~~~tpdVP~G-d--~F 355 (955)
+...|+.-|-.+-.|+....=+...=.+.|....-.+.+.--.. .+..- ...|.+.++..++.-+++|.- + --
T Consensus 71 vL~dR~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv-~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~ 149 (205)
T cd08907 71 VLRERHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPRRDFV-VLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAV 149 (205)
T ss_pred HhhchhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCCceEE-EEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEE
Confidence 33335555555555543211123345566665433333322222 23322 223554445566666666653 3 34
Q ss_pred EeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeee--ee
Q 002193 356 KTELLFCITPGPELSSGEQSSHLVISWRMNFLQST--MM 392 (955)
Q Consensus 356 ~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss--~~ 392 (955)
...++|.|+ +.++.+|+|.=-+++.|.|++ |.
T Consensus 150 ~l~sgYlIe-----p~g~g~s~ltyi~rvD~rG~~P~Wy 183 (205)
T cd08907 150 LLTSQYLIE-----PCGMGRSRLTHICRADLRGRSPDWY 183 (205)
T ss_pred EEeccEEEE-----ECCCCCeEEEEEEEeCCCCCCcHHH
Confidence 568899999 678899999999999999985 65
No 301
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=30.34 E-value=2.7e+02 Score=32.62 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCcEEEEEECCeEEEeeeecC--CCCCe---ec---eEEEEEEe------CCC------CeEEEEEEeCCC-----C-CC
Q 002193 22 SDPYVRLQLGRQRFKTKVVRK--SLSPS---WE---EEFSFKVE------DLK------DELVISVLDEDK-----Y-FN 75 (955)
Q Consensus 22 sDPYv~v~l~~~k~rTkvi~~--t~nP~---Wn---E~F~F~v~------~~~------~~L~V~V~D~d~-----~-~~ 75 (955)
+.+||+|.+.+--.+|..+.- ..++. -+ -.|.++-. ... ..|.|.||.-.. + ..
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 567999999876555555432 11111 11 23444321 111 469999998442 2 45
Q ss_pred CceeEeeEeecccccccCCCC--CCcEEEEcccCCCCCCCCcccEEEEEEEEeeC
Q 002193 76 DDFVGFLKIPVSRVFDADNKS--LPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (955)
Q Consensus 76 d~~LG~v~V~L~~l~~~~~~~--~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~~~ 128 (955)
..+||.+.|+|.--.. +.+. ....|..+-............+|||.+...+.
T Consensus 116 ~klLG~v~vpldl~~a-e~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWA-EGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEEEeccccc-cCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 6799999999874322 2222 34789999866433222356799999987754
No 302
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=29.25 E-value=1.8e+02 Score=27.64 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=48.4
Q ss_pred EEEEEEC-CeEEEeeeecCCCCCeeceEEEEEEe--CC------CCeEEEEEEeCCCCCCCceeEeeEeecccccccCCC
Q 002193 25 YVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVE--DL------KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (955)
Q Consensus 25 Yv~v~l~-~~k~rTkvi~~t~nP~WnE~F~F~v~--~~------~~~L~V~V~D~d~~~~d~~LG~v~V~L~~l~~~~~~ 95 (955)
||.+..- -+.+.|.++. +.+|.+|-+-.|.|. +. ...+.|+++..-. .....+|.+.+++..+......
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 3444433 3556677766 889999998888882 21 4689999998764 3467899999999999853321
Q ss_pred CCCcEEEEcccCCCCCCCCcccEEEEEEEEe
Q 002193 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (955)
Q Consensus 96 ~~~~~W~~L~~~~~~~~~~~~G~I~Lsl~~~ 126 (955)
....-..|.+..+ ..-|.|...+++.
T Consensus 80 -~i~~~~~l~g~~~----~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 -RIHGSATLVGVSG----EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS-----TSEEEEEEEEEE
T ss_pred -eEEEEEEEeccCC----CeEEEEEEEEEec
Confidence 1233445554443 3678888777653
No 303
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=28.74 E-value=4.9e+02 Score=26.05 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=71.1
Q ss_pred eeeEEecChhhhhcccccCCCcchHHHH-HHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEecC
Q 002193 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWA-EEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKAD 334 (955)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~-~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~d 334 (955)
..-...++++++|..+-. ...+..+++ +.-+..++-.+.|... .-.|.++|.-+. + . .+-.|++...|
T Consensus 8 ~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~g----GSIk~~~f~~~~----~-~-~~~Kekve~~D 76 (151)
T PF00407_consen 8 VEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGPG----GSIKKWTFGPGG----P-F-KYVKEKVEAID 76 (151)
T ss_dssp EEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSSTT----T-EEEEEEETTS----S-E-EEEEEEEEEEE
T ss_pred EEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCCC----CeEEEEEecCCC----C-c-ceeEEEEEeec
Confidence 344558999999999765 334555554 6667788888998433 358999998732 1 1 22256777777
Q ss_pred CCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeee
Q 002193 335 GKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQS 389 (955)
Q Consensus 335 ~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~ks 389 (955)
.+...+.-++.--|+ .+++.+-.......+ .++.+ ..+.|.++|-+.
T Consensus 77 ~~~~~~~y~viEGd~-l~~~~~~~~~~~~~~-----~~~g~--~v~k~t~~Ye~~ 123 (151)
T PF00407_consen 77 EENKTITYTVIEGDV-LGDYKSFKSTIQKIP-----KGDGG--CVVKWTIEYEKK 123 (151)
T ss_dssp TTTTEEEEEEEEETT-GTTTEEEEEEEEEEE-----ETTSC--EEEEEEEEEEES
T ss_pred CCCcEEEEEEEeccc-cccEEEEEEEEEecC-----CCCCc--eEEEEEEEEEec
Confidence 665555555555553 456666666666664 33355 466777777663
No 304
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=28.70 E-value=5.5e+02 Score=24.91 Aligned_cols=139 Identities=12% Similarity=0.172 Sum_probs=72.8
Q ss_pred ceeeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEe-ccccCCCceEEEEEEEEEe
Q 002193 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIK-AANKLIKATKGFEEQTYLK 332 (955)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k-~~~~~~k~~~~te~Q~~~~ 332 (955)
+.+...|++++++||..+-.|+ .+.+++...--.......+|+. +| .+.|.. ... .+.. ..+-++..
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~r~--GG-----~~~~~~~~~~--g~~~--~~~g~~~e 69 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPE-LVKRWWGPRGLTMTVCECDIRV--GG-----SYRYVHRAPD--GEEM--GFHGVYHE 69 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHH-HHhhccCCCCCcceEEEEeccC--CC-----EEEEEEECCC--CCEe--cceEEEEE
Confidence 5678999999999999998764 4556654332111122223322 23 133332 111 1111 11233445
Q ss_pred cCCCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHHHHHH
Q 002193 333 ADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFA 412 (955)
Q Consensus 333 ~d~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~~~~~ 412 (955)
.+....++..-. ..+.| +. ...+.+.|+ .. +..|+|.+..+ +..-.-.+..+..|..+|-...+..|.
T Consensus 70 i~p~~~l~~t~~-~~~~~-~~--~s~v~~~l~-----~~-~~gT~l~l~~~--~~~~~~~~~~~~~~~~~Gw~~~l~~L~ 137 (142)
T cd07826 70 VTPPERIVQTEE-FEGLP-DG--VALETVTFT-----EL-GGRTRLTATSR--YPSKEARDGVLASGMEEGMEESYDRLD 137 (142)
T ss_pred EcCCCEEEEEeE-ecCCC-CC--ceEEEEEEE-----EC-CCCEEEEEEEE--eCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 554444443322 12233 22 246677888 23 36799998643 422122333555577788888888777
Q ss_pred HHHh
Q 002193 413 TFLS 416 (955)
Q Consensus 413 ~~l~ 416 (955)
+.|.
T Consensus 138 ~~l~ 141 (142)
T cd07826 138 ELLA 141 (142)
T ss_pred HHHh
Confidence 7764
No 305
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=27.86 E-value=27 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=23.7
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHhhhccCCCccc
Q 002193 447 KLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQG 482 (955)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 482 (955)
++.+..|--|..|+-.+.++|+|+.+.|--|.-+.|
T Consensus 9 KlfFEwFLF~~AIFiAItIlYILLalL~EvPkYIK~ 44 (117)
T PF07234_consen 9 KLFFEWFLFFGAIFIAITILYILLALLFEVPKYIKE 44 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455555666666777777888888888765544433
No 306
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=27.42 E-value=6.1e+02 Score=25.01 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=59.9
Q ss_pred eeeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEecC
Q 002193 255 LVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKAD 334 (955)
Q Consensus 255 ~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~d 334 (955)
-.....++++++++.++=..+..+.+.++..-...++..++ ++..-.|.++|.-.. + +.. ..+++...|
T Consensus 4 ~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-----~~~GsvR~~~~~~~~----~-~~~-~kE~l~~~D 72 (148)
T cd07816 4 EHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-----GGPGSIKLITFGPGG----K-VKY-VKERIDAVD 72 (148)
T ss_pred EEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC-----CCCceEEEEEEcCCC----c-ceE-EEEEEEEEc
Confidence 34456789999999998432212444444433333444443 223558889985333 1 211 234555556
Q ss_pred CCeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEEEEee
Q 002193 335 GKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQ 388 (955)
Q Consensus 335 ~~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~k 388 (955)
.....+.-++.--|.|-..+-+-....++. +.+.++|. |.|.+.|..
T Consensus 73 ~~~~~~~y~vveg~~~~~~~~~y~~t~~v~-----~~~~~~t~--v~Wt~~ye~ 119 (148)
T cd07816 73 EENKTYKYTVIEGDVLKDGYKSYKVEIKFV-----PKGDGGCV--VKWTIEYEK 119 (148)
T ss_pred ccccEEEEEEEecccccCceEEEEEEEEEE-----ECCCCCEE--EEEEEEEEE
Confidence 544444444444444322222234455666 34556664 557777754
No 307
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=27.12 E-value=7.6e+02 Score=26.05 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=34.3
Q ss_pred CcEE-EEEEEeeCCCCCCCc-eEE---EEEEEEEeCCCCCCccEEEEEEEEEEeec
Q 002193 872 NGWL-VEEVMTLHGVPLGDY-FNL---HLRYQVEDSPSRPKGCLAQVYLGVAWLKS 922 (955)
Q Consensus 872 ~~~v-ve~~~~~~dVPyGD~-F~V---~~R~~i~~~s~~~~~c~l~V~~~V~w~Ks 922 (955)
+.++ +......+++|-..- -++ ...|.|+..+ +++|++...+.++..++
T Consensus 122 ~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~--~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 122 GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG--PKGCTLTYVTQNDPKGS 175 (222)
T ss_pred CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECC--CCCEEEEEEEecCCCCC
Confidence 5544 455556668886554 333 3568999865 48899999999999885
No 308
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.07 E-value=39 Score=39.28 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=35.7
Q ss_pred HhhcccceeccccC-CCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEec
Q 002193 519 QARKQKEIFEYDAM-DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 578 (955)
Q Consensus 519 ~~~~~~e~~~f~~~-~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l 578 (955)
-+|.|.|-|-|+.- .|--.+|-|||||||.--... =.|+...-+.. -.-+-+|=|+-|
T Consensus 228 LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRND-FMGslSFgisE-l~K~p~~GWyKl 286 (683)
T KOG0696|consen 228 LNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRND-FMGSLSFGISE-LQKAPVDGWYKL 286 (683)
T ss_pred cCccccceeEEecccccccceeEEEEeccccccccc-ccceecccHHH-HhhcchhhHHHH
Confidence 36889999999653 234458999999999754433 44544332210 012445667765
No 309
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=26.66 E-value=7.8e+02 Score=26.00 Aligned_cols=147 Identities=8% Similarity=0.000 Sum_probs=74.9
Q ss_pred eeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccc---cCCCceEEEEEEEEEe
Q 002193 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN---KLIKATKGFEEQTYLK 332 (955)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~---~~~k~~~~te~Q~~~~ 332 (955)
+.-+++++++.||..||.+....-++......+.-+.... ++ ++ +.|...+. .+++.=-.... ....
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~-----~~---~~-i~Y~v~~p~~~~pv~~RDfV~~-r~~~ 122 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVD-----DN---TL-VSYDVAAGAAGGVVSPRDFVNV-RRIE 122 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeecc-----CC---cE-EEEEEccccccCCCCCCceEEE-EEEE
Confidence 3456688999998655443323334433333332222211 12 33 34543322 23432212212 2234
Q ss_pred cCCCeEEEE-EEEecCCCcC-CCeeEeE---EEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHH
Q 002193 333 ADGKVFAIL-ASVSTPEVMY-GGSFKTE---LLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRET 407 (955)
Q Consensus 333 ~d~~~~~V~-~~~~tpdVP~-Gd~F~v~---~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~ 407 (955)
.++++|++. .++.-+.+|= -++-+++ ..|.+.+ ...++++|++.-...++..| .+=+..|.+...+.+-++
T Consensus 123 ~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~---~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~ 198 (209)
T cd08906 123 RRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLK---SASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEF 198 (209)
T ss_pred ecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEE---CCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHH
Confidence 456666644 4444455553 4554555 4566662 11567788887777777755 334556666666777666
Q ss_pred HHHHHHHHh
Q 002193 408 YEQFATFLS 416 (955)
Q Consensus 408 ~~~~~~~l~ 416 (955)
+..|.+.|.
T Consensus 199 ~~~LR~~~~ 207 (209)
T cd08906 199 ASHLRQRIR 207 (209)
T ss_pred HHHHHHHHh
Confidence 666655553
No 310
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=26.21 E-value=7.5e+02 Score=26.20 Aligned_cols=122 Identities=8% Similarity=-0.046 Sum_probs=61.4
Q ss_pred ceeeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccc--cCCCceEEEEEEEEE
Q 002193 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN--KLIKATKGFEEQTYL 331 (955)
Q Consensus 254 ~~~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~--~~~k~~~~te~Q~~~ 331 (955)
++..-++++++.+++.+|-..+ ..-++.. .-+..++- . ..+++ ++.+.|+.+.. ..++.=-....++.
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~-~~~~~~vl--~--~~~~d---~~i~y~~~~~Pwp~~~~~RDfV~l~~~- 116 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPR-TRFLYDT-MIKTARIH--K--TFTED---ICLVYLVHETPLCLLKQPRDFCCLQVE- 116 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcc-hhhhhHH-hhhheeee--e--ecCCC---eEEEEEEecCCCCCCCCCCeEEEEEEE-
Confidence 3345567999999999995432 2333333 22222221 1 11223 45455544322 22221111112333
Q ss_pred ecCCCeEEEEEEEec-CCCc-CC-Cee---EeEEEEEEecCCCCCCCCCccEEEEEEEEEEe
Q 002193 332 KADGKVFAILASVST-PEVM-YG-GSF---KTELLFCITPGPELSSGEQSSHLVISWRMNFL 387 (955)
Q Consensus 332 ~~d~~~~~V~~~~~t-pdVP-~G-d~F---~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~ 387 (955)
..+++.++|...... |.+| -+ ++- .+...|.|+|-|. .++++|+|.-...++=.
T Consensus 117 ~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~--~g~~~t~vty~~q~DPg 176 (205)
T cd08874 117 AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTV--EGNQYTRVIYIAQVALC 176 (205)
T ss_pred EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECcc--CCCCcEEEEEEEEECCC
Confidence 335555555444444 4887 44 454 4667889994211 15578888777777654
No 311
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=25.85 E-value=64 Score=34.70 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccCeEEEeecceEEEEecCCCceeEEEEecccccccccc
Q 002193 656 LLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVL 694 (955)
Q Consensus 656 ~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~ 694 (955)
...||+.+|++.|.|-++ .-|..||+++|.+|...
T Consensus 25 W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 25 WVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred cEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 456999999999999874 45679999999999864
No 312
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=25.17 E-value=72 Score=39.75 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=45.6
Q ss_pred hhcccceeccccCCCCCceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhhh
Q 002193 520 ARKQKEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC 586 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~~ 586 (955)
+|.|+|+|+|-....==+-|-.+|+|+|-+=+.. =+|.++|+|.. =..|===|||-+.-|-.|
T Consensus 670 nP~W~e~f~F~l~vPELAliRF~V~d~d~~~~dd-F~GQ~tlP~~~---L~~GyRhVpL~~~~G~~~ 732 (746)
T KOG0169|consen 670 NPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDD-FIGQTTLPVSE---LRQGYRHVPLLSREGEAL 732 (746)
T ss_pred CcccCCeEEEEEeccceeEEEEEEEecCCCCccc-ccceeeccHHH---hhCceeeeeecCCCCccc
Confidence 5788999999444433467889999999887666 78999999974 233334457777666666
No 313
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=24.59 E-value=8.4e+02 Score=25.66 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=70.7
Q ss_pred ccccc-CChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeeecccCCccccCceE-EEEecc-CC
Q 002193 795 SSVLP-VPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQ-QKSPLP-NG 871 (955)
Q Consensus 795 ~~~~p-~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~g~~vt~~Q-qk~~~~-d~ 871 (955)
..+|+ ++++.|++++.|..+...+...... + . +....+ .+-+.|.+.-|. |...---..+ ...... ++
T Consensus 54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~-~---~~~~~~--~~i~y~~~k~Pw-Pvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--L-Y---EKECDG--ETVIYWEVKYPF-PLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--h-e---eecCCC--CEEEEEEEEcCC-CCCCceEEEEEEeccccCCC
Confidence 34677 8999999998887766555544321 1 0 101111 233333332222 2222111111 222222 22
Q ss_pred C-cEE-EEEEEeeCCCCCCCce-E---EEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHH
Q 002193 872 N-GWL-VEEVMTLHGVPLGDYF-N---LHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKL 945 (955)
Q Consensus 872 ~-~~v-ve~~~~~~dVPyGD~F-~---V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~l~ 945 (955)
+ -++ +......+++|-.+-| + ....|.|+..+ +++|++...+..+..+ .+=+..+..-+.+..-+.++.|=
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~--~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG--KKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC--CCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHHHH
Confidence 2 233 3344555677765433 3 56788898754 4789999999998744 33333444444444444444443
Q ss_pred HH
Q 002193 946 SV 947 (955)
Q Consensus 946 ~~ 947 (955)
..
T Consensus 202 ka 203 (207)
T cd08910 202 KA 203 (207)
T ss_pred HH
Confidence 33
No 314
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=23.53 E-value=1.6e+02 Score=25.33 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=30.5
Q ss_pred EEeecceEEEEecCCCceeEEEEeccccccccccCC
Q 002193 661 LFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPP 696 (955)
Q Consensus 661 lYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~ 696 (955)
.+++++.|...+.+|+ .....||+..|.+|+-..+
T Consensus 6 y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~ 40 (80)
T PF03703_consen 6 YTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQN 40 (80)
T ss_pred EEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcC
Confidence 6789999999998888 7778999999999987663
No 315
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=23.32 E-value=7.3e+02 Score=26.28 Aligned_cols=118 Identities=10% Similarity=-0.004 Sum_probs=63.6
Q ss_pred cccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeeecccCC--ccccCceEEEEeccCCC
Q 002193 795 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRY--RGEVTSTQQKSPLPNGN 872 (955)
Q Consensus 795 ~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~--g~~vt~~Qqk~~~~d~~ 872 (955)
..+++++++.++.++.|......+.......++- ...+...+-+.++++-+. |. ..--...... ...+++
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl------~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~-~~~~~~ 121 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIH------KTFTEDICLVYLVHETPL-CLLKQPRDFCCLQV-EAKEGE 121 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhHHhhhheeee------eecCCCeEEEEEEecCCC-CCCCCCCeEEEEEE-EEECCC
Confidence 4568999999999987766444443322211111 122233344455554343 22 2211112222 234566
Q ss_pred cEEEEEEEeeC-CCC-CC-Cc---eEEEEEEEEEeCCCC-CCccEEEEEEEEEEe
Q 002193 873 GWLVEEVMTLH-GVP-LG-DY---FNLHLRYQVEDSPSR-PKGCLAQVYLGVAWL 920 (955)
Q Consensus 873 ~~vve~~~~~~-dVP-yG-D~---F~V~~R~~i~~~s~~-~~~c~l~V~~~V~w~ 920 (955)
.+++......+ .+| -+ ++ +.+...|.|++...+ +++|+|.-.+.++=.
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 65554433333 666 33 44 557789999997332 368998888887765
No 316
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=23.24 E-value=7.3e+02 Score=25.25 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=52.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----------Ce-EEEeeeecC-----CCCCeeceEEEEEE--eCC--CCe
Q 002193 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----------RQ-RFKTKVVRK-----SLSPSWEEEFSFKV--EDL--KDE 62 (955)
Q Consensus 3 L~V~VieArnL~~~d~~g~sDPYv~v~l~----------~~-k~rTkvi~~-----t~nP~WnE~F~F~v--~~~--~~~ 62 (955)
+.=.|..|.+... .+-||+..+. .. ...|.+... +..-.||.-|.+.. ..+ =..
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 3446778886642 4568888772 23 455655543 23457998777776 222 268
Q ss_pred EEEEEEeCCCCCCCceeEeeEeec
Q 002193 63 LVISVLDEDKYFNDDFVGFLKIPV 86 (955)
Q Consensus 63 L~V~V~D~d~~~~d~~LG~v~V~L 86 (955)
|.++||..|..+++...|-..+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999999888766554
No 317
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.99 E-value=6.5e+02 Score=24.17 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=60.4
Q ss_pred eeeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCCCceEEEEEEEEEecCC
Q 002193 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKADG 335 (955)
Q Consensus 256 ~d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~k~~~~te~Q~~~~~d~ 335 (955)
+...+.++++++|+.|-. .+..++....|-. ..+- .+ .-++|.|.++... .+++..++ ....
T Consensus 3 I~~~l~v~a~~ff~~l~~---s~~~DI~~~tgk~---~~~~-------~L-~G~~Y~K~~~~~~-~~~v~It~---~~~~ 64 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLID---SLLYDIKQATGKK---LPVK-------QL-KGFSYQKKFKNKR-EAKVKITE---YEPN 64 (120)
T ss_pred EEEEecCCHHHHHHHHHH---HHHHHHHHHcCCC---CChh-------hc-CCcEEEEEcCCCC-EEEEEEEE---EcCC
Confidence 346788999999988753 4566665544322 2222 12 3378999888654 33333222 2346
Q ss_pred CeEEEEEEEecCCCcCCCeeEeEEEEEEecCCCCCCCCCccEEEEEEEE
Q 002193 336 KVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRM 384 (955)
Q Consensus 336 ~~~~V~~~~~tpdVP~Gd~F~v~~ry~i~~~~~~~~~~~~~~l~Vs~~i 384 (955)
+.|.+...+. .|. ..++|.|. +.++++|+|..+=.+
T Consensus 65 ~~Y~~~~~s~-----~~~---~~i~Y~i~-----~~~~~~~~v~y~E~~ 100 (120)
T PF11687_consen 65 KRYAATFSSS-----RGT---FTISYEIE-----PLDDGSIEVTYEEEY 100 (120)
T ss_pred CEEEEEEEec-----CCC---EEEEEEEE-----ECCCCcEEEEEEEEE
Confidence 7888776653 233 68999999 566788877665544
No 318
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=22.86 E-value=76 Score=33.92 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.3
Q ss_pred eeEEEEeccccccccccCCcccCCCCCeEEEEEeeCCCc
Q 002193 678 KTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGM 716 (955)
Q Consensus 678 ~tk~~Ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~~~~ 716 (955)
...|.||+.||..|++.++++ |.+.++++++.|..+
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~---G~~~lv~~~kdG~~~ 146 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSL---GWWYLVFILKDGTSL 146 (213)
T ss_pred ceEEEEEhhheeeEEecCCCC---CceEEEEEecCCCcc
Confidence 347899999999999998765 788999999887653
No 319
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.38 E-value=6.3e+02 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=19.0
Q ss_pred eEEEEEEEEEeCCCCCCccEEEEEEEEEE
Q 002193 891 FNLHLRYQVEDSPSRPKGCLAQVYLGVAW 919 (955)
Q Consensus 891 F~V~~R~~i~~~s~~~~~c~l~V~~~V~w 919 (955)
|....+|.++..+ ++|+|.....+..
T Consensus 83 ~~~~~~~~~~~~~---~~t~v~~~~~~~~ 108 (140)
T cd08865 83 FPYEDTYTFEPVG---GGTRVRYTAELEP 108 (140)
T ss_pred cceEEEEEEEEcC---CceEEEEEEEEcc
Confidence 4457889999864 4788887777665
No 320
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=22.32 E-value=6.4e+02 Score=23.44 Aligned_cols=131 Identities=11% Similarity=-0.055 Sum_probs=0.0
Q ss_pred cccccCChhhheecccCChhHHHHHHHcCccccccCcccccCCCceeEEEEEEeeecccCCccccCceEEEEeccC-CCc
Q 002193 795 SSVLPVPMSFFMELFGGGELERAVMEKAGCVSYSCSSWESEKLDVYERQIYYRFDKCISRYRGEVTSTQQKSPLPN-GNG 873 (955)
Q Consensus 795 ~~~~p~s~~~~f~lF~d~~~~~~~~~k~g~~d~~~s~W~~~~~~~~~R~isY~~~~~l~p~g~~vt~~Qqk~~~~d-~~~ 873 (955)
+..++++++.+|+++.|-.-...+.. .+....+.. .++..+...++ ..|. ..-..+.....+ +..
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~-----~~~~~~~~~--~~~~~~~~~~~------~~g~-~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWP-----GVKSVELLS--GGGPGTERTVR------VAGR-GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTST-----TEEEEEEEE--ECSTEEEEEEE------ECSC-SEEEEEEEEEETTTTE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhh-----ceEEEEEcc--ccccceeEEEE------eccc-cceeEEEEEecCCCcE
Q ss_pred EEEEEEEeeCCCCCCCceEEEEEEEEEeCCCCCCccEEEEEEEEEEeecccchhhhhhhhHHhHHHHHHHHHHHHHHhh
Q 002193 874 WLVEEVMTLHGVPLGDYFNLHLRYQVEDSPSRPKGCLAQVYLGVAWLKSTRHQKRITKNIVSNLEDRLRVKLSVIEKEF 952 (955)
Q Consensus 874 ~vve~~~~~~dVPyGD~F~V~~R~~i~~~s~~~~~c~l~V~~~V~w~Kst~~K~~Iek~t~~~~~~~~k~l~~~~~kei 952 (955)
+....+ .........+|.+...+ ++|+|.....+.. .+.......-....++..++..++-+++.+
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~~~---~gt~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 73 ITWRFV-------PSGFTNGTGRWRFEPVG---DGTRVTWTVEFEP---GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEEEEE-------SSSSCEEEEEEEEEEET---TTEEEEEEEEEEE---SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEE-------ecceeEEEEEEEEEEcC---CCEEEEEEEEEEE---eccchhhHHHHHHHHHHHHHHHHHHHhccc
No 321
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=22.26 E-value=3e+02 Score=31.52 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=69.6
Q ss_pred CCCCCCeeEEEEEeeEe--eecccCeEEEeecceEEEEecCCCceeEEEEeccccccccccCCcccCCCCCeEEEEEeeC
Q 002193 636 GLPPEEFLINDFTCHLK--RKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQG 713 (955)
Q Consensus 636 ~lp~~E~Li~~f~Cal~--r~~~~~GrlYiS~~~icF~S~~~g~~tk~~Ip~~dI~~I~k~~~~~~~~g~~~~~i~l~~~ 713 (955)
.|=+.|.++..+.-.+. .+.---|.+++|+-.+-.||++-- .-.+.|||=.|..|.....-+ .+++||-....
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne-~fNVSiPylqi~~i~ir~SKf----G~aLVieT~~~ 224 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNE-SFNVSIPYLQIKSIRIRDSKF----GPALVIETSES 224 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCc-cccccchHhhheeeeeecccc----ceEEEEEEecc
Confidence 34567888887775553 333333999999999999997643 567999999999998876433 46777665443
Q ss_pred CCcCcCCCceeeccCCceEEEeccccc----hHHHHHHHHHHHHhCCCCh
Q 002193 714 RGMDARHGAKTQDEEGRLKFHFHSFVS----YNVAHRTIMALWKARSLSP 759 (955)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~k~~F~sF~~----rd~a~~~i~~lw~~~~ls~ 759 (955)
.| .|...==++ -++.|+-|..||+.....|
T Consensus 225 sG----------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~~~P 258 (339)
T PF07289_consen 225 SG----------------GYVLGFRVDPEERLQELFKEIQSLHKVYSANP 258 (339)
T ss_pred CC----------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 32 354431122 3677888888998765443
No 322
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=22.13 E-value=6.5e+02 Score=26.31 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=64.6
Q ss_pred cchhhhcccC-CCCCCeeEEEEEeeEee---ecccCeE-EEeecceEEEEe-----cCCCceeEEEEeccccccccccCC
Q 002193 627 TNSAFQKLFG-LPPEEFLINDFTCHLKR---KMLLQGR-LFLSARIIGFHA-----NLFGHKTNFFFLWEDIEDIQVLPP 696 (955)
Q Consensus 627 ~~~~F~~lF~-lp~~E~Li~~f~Cal~r---~~~~~Gr-lYiS~~~icF~S-----~~~g~~tk~~Ip~~dI~~I~k~~~ 696 (955)
.+..++++++ ...+|.+ -|+|...+ ..-.+-| |.||+++|+.-. .....+.+-.||+.+|..|...+
T Consensus 33 ~~~~~~~~~~~~~~~e~v--lFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~- 109 (199)
T PF06017_consen 33 NNPKLQKILEKNEGDEKV--LFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSP- 109 (199)
T ss_pred ccccHHHHHHhccCCcce--EEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEcc-
Confidence 3556777774 3225544 37777654 3333444 589999999986 56666888999999999998776
Q ss_pred cccCCCCCeEEEEEeeCCCcCcCCCceeeccCCceEEEeccccchHHHHHHHHHHHHh
Q 002193 697 SLSSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVAHRTIMALWKA 754 (955)
Q Consensus 697 ~~~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~k~~F~sF~~rd~a~~~i~~lw~~ 754 (955)
.....++|-+ . ++-.++|.+. ++-+....|...++.
T Consensus 110 ----~~D~~~vihv---------------~--~~~D~il~~~-~k~Elv~~L~~~~~~ 145 (199)
T PF06017_consen 110 ----LSDNFFVIHV---------------P--GEGDLILESD-FKTELVTILCKAYKK 145 (199)
T ss_pred ----CCCCEEEEEE---------------C--CCCCEEEEeC-cHHHHHHHHHHHHHH
Confidence 2222233332 1 1124666653 556667777777774
No 323
>PLN02222 phosphoinositide phospholipase C 2
Probab=21.77 E-value=98 Score=38.03 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=44.3
Q ss_pred hhcccceeccccCCCCC-ceeEEEEEecCCccCcccccceeEEeeeecCCCcccceEEecCCcchhh
Q 002193 520 ARKQKEIFEYDAMDEPP-SMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA 585 (955)
Q Consensus 520 ~~~~~e~~~f~~~~~~p-~~~~v~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~l~~~~~~~ 585 (955)
.|.|.|.|+|. +--|- +.+.++|||+|..-... -+|++.|.+.. =..|==.+||-.+.|..
T Consensus 507 nP~W~e~f~F~-i~~PeLAllRf~V~d~D~~~~dd-figq~~lPv~~---Lr~GyR~V~L~~~~g~~ 568 (581)
T PLN02222 507 IPAWDEVFEFP-LTVPELALLRLEVHEYDMSEKDD-FGGQTCLPVWE---LSQGIRAFPLHSRKGEK 568 (581)
T ss_pred CcccCCeeEEE-EEcCceeEEEEEEEECCCCCCCc-EEEEEEcchhh---hhCccceEEccCCCcCC
Confidence 49999999995 44443 78999999998643333 79999999874 34455577886655544
No 324
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=20.98 E-value=9.8e+02 Score=25.13 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=77.5
Q ss_pred eeeEEe-cChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEeccccCC--CceEEEEEEEEEe
Q 002193 256 VDQMYV-IAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLI--KATKGFEEQTYLK 332 (955)
Q Consensus 256 ~d~~~~-~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~~~--k~~~~te~Q~~~~ 332 (955)
.-.+|+ +++..++.+|... ++.++....-. ++- +...++ .+.+.|...+--++ .+. ++ .+....
T Consensus 53 ~~~~~~~~s~~~~~~~l~D~--~~r~~Wd~~~~--~~~----~~~~~~---~~i~y~~~k~PwPvs~RD~-V~-~r~~~~ 119 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMDL--EYRKQWDQYVK--ELY----EKECDG---ETVIYWEVKYPFPLSNRDY-VY-IRQRRD 119 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCH--HHHHHHHHHHH--hhe----eecCCC---CEEEEEEEEcCCCCCCceE-EE-EEEecc
Confidence 345776 7899999888753 45543332211 111 112223 34444444333334 233 11 122222
Q ss_pred c--CCC-eEEEE-EEEecCCCcCCCee-E---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHH
Q 002193 333 A--DGK-VFAIL-ASVSTPEVMYGGSF-K---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSAL 404 (955)
Q Consensus 333 ~--d~~-~~~V~-~~~~tpdVP~Gd~F-~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ 404 (955)
. ++. .|+|. -++.-|++|-.+-| + ....|.|+ +.++++|++...+..+..++ +=+.++..-+..++
T Consensus 120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~-----p~~~~~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~ 193 (207)
T cd08910 120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIE-----SDGKKGSKVFMYYFDNPGGM-IPSWLINWAAKNGV 193 (207)
T ss_pred ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEE-----eCCCCceEEEEEEEeCCCCc-chHHHHHHHHHHhh
Confidence 2 233 34443 34556888876443 3 45667788 45678899988888887443 33334455566777
Q ss_pred HHHHHHHHHHHhhc
Q 002193 405 RETYEQFATFLSQT 418 (955)
Q Consensus 405 ke~~~~~~~~l~~~ 418 (955)
-.++..|.++.++|
T Consensus 194 ~~~l~~l~ka~~~y 207 (207)
T cd08910 194 PNFLKDMQKACQNY 207 (207)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777766554
No 325
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=20.56 E-value=1e+03 Score=25.08 Aligned_cols=147 Identities=7% Similarity=-0.043 Sum_probs=75.3
Q ss_pred eeEEecChhhhhcccccCCCcchHHHHHHcCCeeeeeccccccCCCCceEEEEEEEecccc---CCCceEEEEEEEEEec
Q 002193 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LIKATKGFEEQTYLKA 333 (955)
Q Consensus 257 d~~~~~~~~~l~~llF~~~S~f~~~~~~~~~~~d~~~~pW~~~~~~~~~~R~~sY~k~~~~---~~k~~~~te~Q~~~~~ 333 (955)
.-+.++++++++..||.+....-++.....++.-+ +..+ ..+..+.| +.+.. .++.=-....+.....
T Consensus 54 e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl-------~~id-~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~ 124 (209)
T cd08905 54 EVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKIL-------QRIG-KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRR 124 (209)
T ss_pred EEEecCCHHHHHHHHHhchhhhceecccchHHHHH-------hhcC-CCceEEEE-EeccCCCCccCccceEEEEEEEEc
Confidence 44568889998876775421222222111111111 1111 22343334 32222 2432212223444444
Q ss_pred CCCeEEEEEEEecCCCcC-CCeeE---eEEEEEEecCCCCCCCCCccEEEEEEEEEEeeeeeehhhhhhcHHHHHHHHHH
Q 002193 334 DGKVFAILASVSTPEVMY-GGSFK---TELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYE 409 (955)
Q Consensus 334 d~~~~~V~~~~~tpdVP~-Gd~F~---v~~ry~i~~~~~~~~~~~~~~l~Vs~~i~w~kss~~K~~Iek~a~~G~ke~~~ 409 (955)
++.++++..++.-|..|= -++-+ ....|.|+|- ..++++|++.....+...|+ +=+..+.+.+.+.+-++|.
T Consensus 125 ~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~---~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~ 200 (209)
T cd08905 125 GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPL---AGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFAN 200 (209)
T ss_pred CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEEC---CCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHH
Confidence 455555555555566653 34444 4467889931 11348899888888888666 4455566666677766666
Q ss_pred HHHHHHh
Q 002193 410 QFATFLS 416 (955)
Q Consensus 410 ~~~~~l~ 416 (955)
.|.+.|.
T Consensus 201 ~Lr~~~~ 207 (209)
T cd08905 201 HLRQRMA 207 (209)
T ss_pred HHHHHHh
Confidence 6655554
No 326
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=20.13 E-value=1.9e+02 Score=27.10 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=35.1
Q ss_pred cccccccCCCCCCchhhhheeeeeeeehhhHHHHHHHHHHhh
Q 002193 480 IQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQAR 521 (955)
Q Consensus 480 ~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (955)
...||+.| +|.++.-++.+.|=.|=.+.+..++.||+..|
T Consensus 61 ~~~L~~~g--l~~~~a~~~g~~IGflGvd~ir~~~~r~~~~k 100 (100)
T PF05106_consen 61 RSLLEYFG--LPQSLAVFIGGFIGFLGVDKIRELIRRFINKK 100 (100)
T ss_pred HHHHHHhC--CChhhhhhheeeeeccCHHHHHHHHHHHhhcC
Confidence 34678886 59999999999999999999999999998754
Done!