Query 002194
Match_columns 954
No_of_seqs 614 out of 4735
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 18:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 1E-44 2.2E-49 426.1 53.5 599 102-900 6-619 (620)
2 PRK10115 protease 2; Provision 100.0 1.4E-40 3E-45 392.3 53.3 322 551-900 337-678 (686)
3 KOG2281 Dipeptidyl aminopeptid 100.0 5.4E-32 1.2E-36 288.7 34.0 350 520-896 498-866 (867)
4 KOG2100 Dipeptidyl aminopeptid 100.0 3.7E-30 8.1E-35 303.7 51.1 352 520-898 384-748 (755)
5 COG1770 PtrB Protease II [Amin 100.0 4.8E-26 1E-30 248.5 50.2 302 550-877 338-657 (682)
6 PF00326 Peptidase_S9: Prolyl 99.9 4.3E-27 9.3E-32 241.7 15.5 196 703-900 5-212 (213)
7 PRK01029 tolB translocation pr 99.9 6E-24 1.3E-28 239.2 29.0 283 104-521 132-426 (428)
8 PRK05137 tolB translocation pr 99.9 1E-22 2.3E-27 232.1 28.7 235 163-499 182-420 (435)
9 PRK03629 tolB translocation pr 99.9 2.8E-22 6E-27 227.0 30.6 234 163-499 179-414 (429)
10 PRK01029 tolB translocation pr 99.9 2.5E-22 5.5E-27 226.1 30.1 266 193-572 141-415 (428)
11 KOG2237 Predicted serine prote 99.9 1E-20 2.2E-25 204.8 38.7 290 593-899 391-707 (712)
12 PRK04043 tolB translocation pr 99.9 6.9E-22 1.5E-26 220.7 28.9 231 163-491 169-402 (419)
13 COG4946 Uncharacterized protei 99.9 3.2E-21 6.9E-26 198.9 29.3 387 115-608 43-513 (668)
14 COG1505 Serine proteases of th 99.9 1E-21 2.2E-26 211.8 25.4 315 553-898 320-647 (648)
15 PRK02889 tolB translocation pr 99.9 1.9E-21 4.1E-26 220.6 29.1 227 164-491 177-405 (427)
16 PRK04792 tolB translocation pr 99.9 3.1E-21 6.7E-26 219.2 30.0 228 163-491 198-427 (448)
17 PRK03629 tolB translocation pr 99.9 6.9E-21 1.5E-25 215.6 31.1 252 201-571 164-417 (429)
18 PRK04922 tolB translocation pr 99.9 3E-21 6.6E-26 219.8 28.4 234 163-499 184-419 (433)
19 PRK05137 tolB translocation pr 99.9 4.9E-21 1.1E-25 218.4 30.0 255 200-569 165-421 (435)
20 PRK00178 tolB translocation pr 99.9 1E-20 2.2E-25 216.4 29.8 227 164-491 180-408 (430)
21 PRK04043 tolB translocation pr 99.9 3.1E-20 6.8E-25 207.4 28.2 250 201-572 155-412 (419)
22 PRK04792 tolB translocation pr 99.9 7.7E-20 1.7E-24 207.8 30.7 252 201-571 183-436 (448)
23 PRK04922 tolB translocation pr 99.9 6.6E-20 1.4E-24 208.8 30.0 254 200-571 167-422 (433)
24 PRK02889 tolB translocation pr 99.9 9E-20 1.9E-24 206.9 30.6 250 201-572 164-415 (427)
25 PRK01742 tolB translocation pr 99.9 5.8E-20 1.3E-24 208.8 28.9 221 163-491 184-406 (429)
26 KOG0293 WD40 repeat-containing 99.9 7.7E-22 1.7E-26 200.3 11.4 327 13-487 152-513 (519)
27 PRK00178 tolB translocation pr 99.9 1.7E-19 3.6E-24 206.4 30.3 255 199-571 161-417 (430)
28 PRK10566 esterase; Provisional 99.8 4.9E-19 1.1E-23 187.1 23.6 219 651-898 11-249 (249)
29 KOG1455 Lysophospholipase [Lip 99.8 4.1E-19 8.9E-24 177.8 20.7 232 639-897 27-312 (313)
30 PLN02298 hydrolase, alpha/beta 99.8 1.3E-18 2.7E-23 192.0 26.2 244 633-901 26-321 (330)
31 PRK13604 luxD acyl transferase 99.8 4.1E-19 8.8E-24 184.5 20.4 206 643-878 13-246 (307)
32 PRK01742 tolB translocation pr 99.8 9.8E-19 2.1E-23 198.8 25.2 221 110-466 205-426 (429)
33 PF05448 AXE1: Acetyl xylan es 99.8 1.9E-18 4E-23 184.8 21.7 233 635-897 52-320 (320)
34 TIGR02821 fghA_ester_D S-formy 99.8 3.6E-18 7.8E-23 182.1 22.4 238 638-897 12-274 (275)
35 PRK05077 frsA fermentation/res 99.8 4.9E-18 1.1E-22 190.0 24.2 230 636-898 165-413 (414)
36 PLN02442 S-formylglutathione h 99.8 5.9E-18 1.3E-22 180.6 22.6 240 637-898 16-281 (283)
37 PF01738 DLH: Dienelactone hyd 99.8 2E-18 4.3E-23 177.9 18.1 201 652-898 1-218 (218)
38 TIGR02800 propeller_TolB tol-p 99.8 2.8E-17 6.1E-22 187.9 29.1 228 163-491 170-399 (417)
39 PLN02385 hydrolase; alpha/beta 99.8 1.4E-17 3E-22 184.8 25.0 234 640-899 62-347 (349)
40 PF00930 DPPIV_N: Dipeptidyl p 99.8 1.2E-17 2.6E-22 184.7 23.1 323 117-530 1-348 (353)
41 PHA02857 monoglyceride lipase; 99.8 2.2E-17 4.7E-22 177.5 24.0 223 644-897 5-273 (276)
42 KOG4391 Predicted alpha/beta h 99.8 2.8E-18 6E-23 160.7 12.8 238 628-900 43-285 (300)
43 KOG0271 Notchless-like WD40 re 99.8 2E-17 4.3E-22 167.0 19.6 325 111-599 118-467 (480)
44 KOG1552 Predicted alpha/beta h 99.8 1.1E-17 2.4E-22 164.6 16.4 219 638-898 34-253 (258)
45 TIGR02800 propeller_TolB tol-p 99.8 2.2E-16 4.8E-21 180.6 30.0 253 198-570 153-407 (417)
46 COG0412 Dienelactone hydrolase 99.8 6.7E-17 1.4E-21 165.8 22.8 212 640-899 3-235 (236)
47 PRK10749 lysophospholipase L2; 99.8 9.3E-17 2E-21 176.4 24.6 229 639-897 30-329 (330)
48 PRK10162 acetyl esterase; Prov 99.8 8.1E-17 1.8E-21 174.9 22.5 231 638-899 56-317 (318)
49 COG3458 Acetyl esterase (deace 99.7 2.8E-17 6E-22 160.3 15.1 232 636-897 53-317 (321)
50 PF00930 DPPIV_N: Dipeptidyl p 99.7 4.8E-16 1E-20 171.9 26.0 302 197-609 1-353 (353)
51 PLN02652 hydrolase; alpha/beta 99.7 1.3E-15 2.8E-20 169.1 25.7 231 639-899 110-389 (395)
52 COG0823 TolB Periplasmic compo 99.7 3.5E-16 7.5E-21 173.2 20.3 226 111-465 195-423 (425)
53 COG0823 TolB Periplasmic compo 99.7 1.1E-15 2.3E-20 169.4 22.5 229 163-491 173-404 (425)
54 PRK05371 x-prolyl-dipeptidyl a 99.7 3.6E-15 7.8E-20 177.7 28.2 194 703-902 270-524 (767)
55 PRK11460 putative hydrolase; P 99.7 8.9E-15 1.9E-19 151.2 22.4 128 739-899 83-210 (232)
56 PF14583 Pectate_lyase22: Olig 99.6 1.1E-13 2.4E-18 146.1 28.9 328 190-618 37-384 (386)
57 COG4946 Uncharacterized protei 99.6 1.4E-13 3E-18 143.0 29.0 171 308-528 335-507 (668)
58 COG2267 PldB Lysophospholipase 99.6 2.2E-14 4.8E-19 153.0 22.7 230 640-899 10-296 (298)
59 PF14583 Pectate_lyase22: Olig 99.6 7.9E-14 1.7E-18 147.2 26.2 313 110-529 37-370 (386)
60 KOG1515 Arylacetamide deacetyl 99.6 2.4E-14 5.1E-19 151.9 21.3 227 647-897 69-335 (336)
61 TIGR01840 esterase_phb esteras 99.6 7.8E-15 1.7E-19 150.2 16.1 188 654-861 1-197 (212)
62 COG0657 Aes Esterase/lipase [L 99.6 2.8E-14 6E-19 155.7 21.1 223 646-896 58-309 (312)
63 COG1647 Esterase/lipase [Gener 99.6 1.7E-14 3.6E-19 137.5 16.5 198 671-895 16-242 (243)
64 PF12715 Abhydrolase_7: Abhydr 99.6 1.9E-15 4.1E-20 158.4 10.3 221 634-872 83-343 (390)
65 COG4099 Predicted peptidase [G 99.6 4.4E-15 9.6E-20 146.3 12.1 183 646-871 168-354 (387)
66 TIGR00976 /NonD putative hydro 99.6 2.9E-14 6.3E-19 167.1 20.0 232 645-902 2-308 (550)
67 PF06500 DUF1100: Alpha/beta h 99.6 1.4E-14 3E-19 155.1 14.7 228 635-898 161-410 (411)
68 COG2945 Predicted hydrolase of 99.6 2.8E-14 6.2E-19 132.8 14.7 202 639-895 4-205 (210)
69 TIGR01607 PST-A Plasmodium sub 99.6 9.3E-14 2E-18 152.0 19.9 235 644-895 2-331 (332)
70 PF07859 Abhydrolase_3: alpha/ 99.6 1.2E-14 2.6E-19 149.2 11.7 180 673-877 1-209 (211)
71 TIGR03100 hydr1_PEP hydrolase, 99.6 3.1E-13 6.8E-18 144.0 22.4 229 640-895 3-273 (274)
72 KOG0272 U4/U6 small nuclear ri 99.6 6.4E-14 1.4E-18 144.0 15.4 273 105-485 172-458 (459)
73 PF02230 Abhydrolase_2: Phosph 99.5 5E-13 1.1E-17 137.2 21.3 129 740-898 87-216 (216)
74 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 1.2E-11 2.6E-16 134.5 32.5 268 163-569 11-288 (300)
75 PF02129 Peptidase_S15: X-Pro 99.5 1.4E-13 3E-18 146.7 16.4 213 648-876 1-271 (272)
76 PF12695 Abhydrolase_5: Alpha/ 99.5 1.9E-13 4.1E-18 131.1 15.6 145 672-876 1-145 (145)
77 TIGR03611 RutD pyrimidine util 99.5 5.5E-13 1.2E-17 141.4 20.3 194 670-895 13-256 (257)
78 TIGR03343 biphenyl_bphD 2-hydr 99.5 1.8E-13 3.9E-18 147.7 15.7 175 705-895 53-281 (282)
79 PF10503 Esterase_phd: Esteras 99.5 2.4E-13 5.3E-18 136.0 15.2 187 652-861 1-198 (220)
80 PRK00870 haloalkane dehalogena 99.5 8.8E-13 1.9E-17 143.5 20.0 225 638-897 20-301 (302)
81 PLN02511 hydrolase 99.5 5.5E-13 1.2E-17 149.0 18.0 235 639-900 71-368 (388)
82 COG0400 Predicted esterase [Ge 99.5 2E-12 4.3E-17 128.0 18.7 130 737-898 77-206 (207)
83 PLN00021 chlorophyllase 99.5 4.2E-12 9.1E-17 136.1 21.6 209 649-902 36-288 (313)
84 TIGR03056 bchO_mg_che_rel puta 99.5 2.8E-12 6.2E-17 137.9 20.3 209 647-895 13-278 (278)
85 KOG0318 WD40 repeat stress pro 99.5 2.5E-10 5.4E-15 121.0 33.3 136 109-261 104-253 (603)
86 PRK10985 putative hydrolase; P 99.5 2.1E-12 4.6E-17 141.4 18.7 228 643-898 35-321 (324)
87 KOG0271 Notchless-like WD40 re 99.4 1.5E-12 3.3E-17 132.1 15.5 122 367-528 347-470 (480)
88 cd00200 WD40 WD40 domain, foun 99.4 2.4E-11 5.2E-16 130.2 26.2 266 110-528 11-280 (289)
89 TIGR02240 PHA_depoly_arom poly 99.4 5.8E-12 1.3E-16 135.2 21.2 211 647-897 9-266 (276)
90 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 5.2E-11 1.1E-15 129.5 29.1 246 111-491 33-281 (300)
91 KOG4178 Soluble epoxide hydrol 99.4 9.6E-12 2.1E-16 127.7 21.1 199 670-897 44-320 (322)
92 PRK10673 acyl-CoA esterase; Pr 99.4 6.1E-12 1.3E-16 133.4 20.4 195 670-896 16-254 (255)
93 PLN02872 triacylglycerol lipas 99.4 4.9E-12 1.1E-16 139.8 20.2 246 635-899 40-391 (395)
94 PLN02824 hydrolase, alpha/beta 99.4 6.8E-12 1.5E-16 136.1 21.0 195 671-897 30-294 (294)
95 TIGR02427 protocat_pcaD 3-oxoa 99.4 1.2E-12 2.6E-17 138.0 14.4 193 670-894 13-250 (251)
96 PLN03087 BODYGUARD 1 domain co 99.4 9.4E-12 2E-16 139.9 21.6 222 642-896 178-478 (481)
97 PLN02965 Probable pheophorbida 99.4 5.1E-12 1.1E-16 133.8 17.7 195 672-896 5-252 (255)
98 PLN02679 hydrolase, alpha/beta 99.4 1.6E-11 3.5E-16 136.4 22.4 198 671-896 89-356 (360)
99 PF08840 BAAT_C: BAAT / Acyl-C 99.4 1.9E-12 4.1E-17 131.3 13.6 156 742-899 5-212 (213)
100 TIGR01249 pro_imino_pep_1 prol 99.4 5.6E-12 1.2E-16 137.2 18.2 217 643-898 8-306 (306)
101 TIGR01836 PHA_synth_III_C poly 99.4 1.3E-11 2.8E-16 136.9 21.2 185 703-897 85-350 (350)
102 PRK11071 esterase YqiA; Provis 99.4 1.3E-11 2.7E-16 123.2 18.9 177 671-895 2-189 (190)
103 COG2706 3-carboxymuconate cycl 99.4 3.7E-10 8E-15 115.7 29.5 292 163-569 16-332 (346)
104 PLN02894 hydrolase, alpha/beta 99.4 3E-11 6.6E-16 135.6 23.0 204 670-902 105-390 (402)
105 KOG0315 G-protein beta subunit 99.4 2.4E-11 5.2E-16 116.8 18.5 241 110-490 42-291 (311)
106 PRK03592 haloalkane dehalogena 99.4 2.3E-11 4.9E-16 132.1 20.5 210 647-897 14-289 (295)
107 KOG0272 U4/U6 small nuclear ri 99.4 1.3E-11 2.9E-16 127.2 17.2 269 190-602 177-449 (459)
108 TIGR03695 menH_SHCHC 2-succiny 99.4 7.8E-12 1.7E-16 131.6 16.1 195 671-894 2-250 (251)
109 KOG0315 G-protein beta subunit 99.4 1.1E-10 2.3E-15 112.5 21.2 272 163-571 20-299 (311)
110 TIGR01738 bioH putative pimelo 99.4 1.2E-11 2.6E-16 129.9 16.5 166 710-894 28-245 (245)
111 TIGR01250 pro_imino_pep_2 prol 99.4 1.4E-11 3.1E-16 132.9 17.3 195 670-895 25-288 (288)
112 PRK06489 hypothetical protein; 99.4 2.9E-11 6.3E-16 134.7 20.1 175 710-897 103-357 (360)
113 PRK10439 enterobactin/ferric e 99.4 6.8E-11 1.5E-15 131.5 22.2 207 638-878 179-393 (411)
114 KOG0273 Beta-transducin family 99.3 1.4E-10 3E-15 121.3 22.6 279 104-529 231-513 (524)
115 KOG0279 G protein beta subunit 99.3 2.4E-10 5.2E-15 112.1 22.2 252 163-528 38-302 (315)
116 PRK14875 acetoin dehydrogenase 99.3 2.9E-11 6.4E-16 136.1 18.8 169 709-896 154-370 (371)
117 COG3509 LpqC Poly(3-hydroxybut 99.3 6.3E-11 1.4E-15 118.9 18.0 226 647-898 42-308 (312)
118 KOG3043 Predicted hydrolase re 99.3 8.8E-12 1.9E-16 119.4 11.2 164 704-898 59-241 (242)
119 PRK03204 haloalkane dehalogena 99.3 1.3E-10 2.8E-15 125.1 21.7 173 709-894 57-285 (286)
120 KOG0286 G-protein beta subunit 99.3 2.5E-10 5.5E-15 112.5 21.3 270 110-484 57-342 (343)
121 TIGR03101 hydr2_PEP hydrolase, 99.3 2.2E-10 4.8E-15 119.3 21.8 207 642-873 3-243 (266)
122 KOG0291 WD40-repeat-containing 99.3 1.4E-09 3.1E-14 120.1 28.6 227 110-476 309-541 (893)
123 PRK07581 hypothetical protein; 99.3 6.5E-11 1.4E-15 131.1 18.8 181 707-899 66-338 (339)
124 cd00200 WD40 WD40 domain, foun 99.3 1.6E-09 3.5E-14 115.9 28.6 266 189-601 10-279 (289)
125 PRK10349 carboxylesterase BioH 99.3 5.1E-11 1.1E-15 126.4 16.3 190 671-895 14-254 (256)
126 PF10282 Lactonase: Lactonase, 99.3 1.3E-09 2.7E-14 120.4 27.8 290 163-568 13-332 (345)
127 KOG4667 Predicted esterase [Li 99.3 6.9E-11 1.5E-15 111.8 14.8 210 638-881 9-244 (269)
128 COG0429 Predicted hydrolase of 99.3 1.2E-10 2.6E-15 119.1 17.8 228 643-899 53-342 (345)
129 PLN02578 hydrolase 99.3 1.4E-10 3E-15 128.9 20.0 170 709-895 109-353 (354)
130 COG2936 Predicted acyl esteras 99.3 7.7E-11 1.7E-15 130.9 16.8 239 637-899 17-319 (563)
131 KOG0291 WD40-repeat-containing 99.3 2.8E-09 6.1E-14 117.8 28.3 226 190-529 309-540 (893)
132 PF12697 Abhydrolase_6: Alpha/ 99.3 6.8E-12 1.5E-16 129.9 7.4 159 704-878 17-218 (228)
133 PLN03084 alpha/beta hydrolase 99.3 8.1E-10 1.7E-14 122.1 24.0 193 670-895 127-382 (383)
134 KOG0973 Histone transcription 99.3 2.9E-10 6.2E-15 131.1 20.8 148 189-416 70-237 (942)
135 KOG2055 WD40 repeat protein [G 99.2 3.9E-10 8.4E-15 117.8 19.0 254 163-528 235-501 (514)
136 PRK11028 6-phosphogluconolacto 99.2 8.5E-09 1.8E-13 113.8 31.1 263 163-528 12-292 (330)
137 KOG0318 WD40 repeat stress pro 99.2 1E-08 2.2E-13 109.1 28.9 74 400-490 192-268 (603)
138 TIGR01392 homoserO_Ac_trn homo 99.2 3.2E-10 6.8E-15 126.0 19.1 67 825-894 283-350 (351)
139 KOG0279 G protein beta subunit 99.2 1.1E-09 2.3E-14 107.7 20.0 234 110-487 65-313 (315)
140 PRK08775 homoserine O-acetyltr 99.2 1E-10 2.2E-15 129.4 14.9 175 708-897 95-339 (343)
141 KOG1446 Histone H3 (Lys4) meth 99.2 1.1E-08 2.4E-13 102.8 26.4 253 189-571 15-273 (311)
142 PF00756 Esterase: Putative es 99.2 3.7E-11 8E-16 127.0 9.7 214 649-894 5-251 (251)
143 KOG0266 WD40 repeat-containing 99.2 8.3E-10 1.8E-14 126.2 21.2 275 109-487 160-454 (456)
144 KOG2096 WD40 repeat protein [G 99.2 1.3E-09 2.8E-14 108.6 19.4 282 110-528 88-392 (420)
145 KOG0286 G-protein beta subunit 99.2 9E-09 2E-13 101.8 25.0 255 179-567 48-310 (343)
146 PRK00175 metX homoserine O-ace 99.2 9.1E-10 2E-14 123.2 20.9 70 825-897 304-374 (379)
147 KOG0263 Transcription initiati 99.2 3.1E-10 6.7E-15 126.5 16.6 207 177-487 442-649 (707)
148 KOG0266 WD40 repeat-containing 99.2 2.1E-09 4.7E-14 122.9 24.2 243 190-567 161-416 (456)
149 PRK11126 2-succinyl-6-hydroxy- 99.2 4.2E-10 9.1E-15 118.3 17.0 188 670-896 2-241 (242)
150 KOG1407 WD40 repeat protein [F 99.2 4.7E-09 1E-13 102.1 20.9 271 109-531 21-294 (313)
151 KOG3101 Esterase D [General fu 99.2 1.2E-10 2.6E-15 109.5 9.7 210 649-878 25-263 (283)
152 KOG0293 WD40 repeat-containing 99.2 1.7E-09 3.6E-14 111.4 18.8 194 190-487 226-425 (519)
153 PF12740 Chlorophyllase2: Chlo 99.2 2.3E-09 5E-14 108.6 19.0 179 653-876 5-205 (259)
154 KOG1838 Alpha/beta hydrolase [ 99.1 1.9E-09 4.2E-14 114.9 19.0 237 639-898 93-389 (409)
155 PLN02211 methyl indole-3-aceta 99.1 1.8E-09 3.9E-14 115.0 18.3 195 670-895 18-268 (273)
156 PRK11028 6-phosphogluconolacto 99.1 3.5E-08 7.6E-13 108.9 29.2 258 110-491 36-308 (330)
157 KOG4409 Predicted hydrolase/ac 99.1 2.6E-09 5.7E-14 110.1 18.0 178 707-896 112-363 (365)
158 KOG0305 Anaphase promoting com 99.1 1E-08 2.3E-13 112.6 23.7 248 163-528 197-450 (484)
159 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.3E-08 1.1E-12 104.6 28.5 135 335-491 197-332 (352)
160 PF08662 eIF2A: Eukaryotic tra 99.1 2.9E-09 6.4E-14 106.3 17.6 175 113-380 10-185 (194)
161 PLN00181 protein SPA1-RELATED; 99.1 2.2E-08 4.7E-13 123.6 28.4 237 111-485 486-736 (793)
162 KOG0273 Beta-transducin family 99.1 2E-08 4.3E-13 105.6 23.2 265 189-603 236-513 (524)
163 KOG1454 Predicted hydrolase/ac 99.1 2.5E-09 5.4E-14 115.5 16.9 173 712-897 86-324 (326)
164 PRK13616 lipoprotein LpqB; Pro 99.1 2E-09 4.2E-14 124.7 17.1 113 109-261 350-465 (591)
165 KOG1407 WD40 repeat protein [F 99.1 8.9E-09 1.9E-13 100.2 18.5 207 163-478 87-295 (313)
166 KOG4497 Uncharacterized conser 99.1 4.7E-09 1E-13 105.1 16.3 215 193-529 13-230 (447)
167 PF02897 Peptidase_S9_N: Proly 99.1 9.3E-08 2E-12 109.1 29.6 251 314-626 150-413 (414)
168 KOG2314 Translation initiation 99.1 1.4E-07 2.9E-12 101.2 28.1 341 111-603 213-557 (698)
169 KOG4497 Uncharacterized conser 99.1 8.6E-09 1.9E-13 103.3 17.8 140 113-352 13-154 (447)
170 PRK06765 homoserine O-acetyltr 99.1 5.7E-09 1.2E-13 115.7 18.4 69 825-896 318-387 (389)
171 KOG0265 U5 snRNP-specific prot 99.1 5.1E-08 1.1E-12 97.0 22.8 271 110-528 49-327 (338)
172 COG2706 3-carboxymuconate cycl 99.1 4E-07 8.7E-12 93.8 30.1 253 315-626 67-332 (346)
173 KOG0973 Histone transcription 99.1 1.2E-08 2.6E-13 118.0 21.3 104 189-352 130-240 (942)
174 PF03583 LIP: Secretory lipase 99.0 1E-08 2.2E-13 109.2 19.4 191 703-902 17-286 (290)
175 KOG2055 WD40 repeat protein [G 99.0 1.3E-08 2.8E-13 106.6 19.2 279 189-604 214-503 (514)
176 KOG4627 Kynurenine formamidase 99.0 1.6E-09 3.4E-14 101.8 10.9 197 637-877 43-248 (270)
177 KOG1446 Histone H3 (Lys4) meth 99.0 1.9E-07 4.2E-12 94.0 26.3 251 110-501 16-272 (311)
178 PF08662 eIF2A: Eukaryotic tra 99.0 6.4E-09 1.4E-13 103.9 15.8 126 309-475 34-163 (194)
179 KOG0263 Transcription initiati 99.0 6.6E-09 1.4E-13 116.1 17.0 145 332-528 494-638 (707)
180 PRK05855 short chain dehydroge 99.0 3.9E-09 8.4E-14 126.7 16.5 212 646-897 9-292 (582)
181 PF10282 Lactonase: Lactonase, 99.0 1.2E-07 2.5E-12 104.9 26.4 267 108-491 36-326 (345)
182 PF03403 PAF-AH_p_II: Platelet 99.0 9.9E-09 2.1E-13 113.0 17.5 188 668-900 98-361 (379)
183 PF02239 Cytochrom_D1: Cytochr 99.0 3.4E-08 7.3E-13 108.9 21.4 304 113-566 41-353 (369)
184 PF02897 Peptidase_S9_N: Proly 99.0 6.5E-08 1.4E-12 110.3 23.6 270 192-569 127-413 (414)
185 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.5E-06 3.3E-11 93.5 32.3 291 218-622 26-335 (352)
186 PLN02980 2-oxoglutarate decarb 99.0 1.7E-08 3.7E-13 131.4 20.8 199 670-897 1371-1639(1655)
187 COG2382 Fes Enterochelin ester 98.9 1.2E-08 2.7E-13 103.7 14.0 221 639-898 69-296 (299)
188 KOG0296 Angio-associated migra 98.9 8.2E-07 1.8E-11 90.9 26.9 290 110-528 66-387 (399)
189 KOG2984 Predicted hydrolase [G 98.9 2.2E-09 4.8E-14 100.4 7.9 173 711-896 70-275 (277)
190 KOG0772 Uncharacterized conser 98.9 5.8E-08 1.3E-12 103.0 18.4 249 151-490 177-446 (641)
191 KOG0282 mRNA splicing factor [ 98.9 3.2E-08 6.9E-13 104.5 15.5 242 110-491 216-464 (503)
192 PF08538 DUF1749: Protein of u 98.9 1.4E-08 3E-13 104.9 12.6 187 702-895 53-303 (303)
193 PRK13616 lipoprotein LpqB; Pro 98.9 1.1E-07 2.3E-12 110.5 21.3 178 190-450 351-533 (591)
194 KOG0296 Angio-associated migra 98.9 3E-07 6.6E-12 93.9 21.7 274 110-485 108-396 (399)
195 KOG2112 Lysophospholipase [Lip 98.9 1.1E-07 2.5E-12 91.3 16.8 115 755-896 89-203 (206)
196 KOG2096 WD40 repeat protein [G 98.9 1.2E-07 2.5E-12 95.0 17.4 195 336-603 192-393 (420)
197 TIGR01838 PHA_synth_I poly(R)- 98.9 1.2E-07 2.5E-12 108.2 19.6 88 703-795 211-303 (532)
198 PRK07868 acyl-CoA synthetase; 98.8 2.1E-07 4.5E-12 117.3 23.5 227 652-904 49-368 (994)
199 KOG1273 WD40 repeat protein [G 98.8 3.8E-07 8.3E-12 91.3 20.0 263 98-502 13-291 (405)
200 PF07224 Chlorophyllase: Chlor 98.8 1.2E-07 2.7E-12 93.4 16.3 207 651-901 32-278 (307)
201 COG0627 Predicted esterase [Ge 98.8 4.4E-08 9.5E-13 103.9 14.1 145 751-899 142-313 (316)
202 KOG0772 Uncharacterized conser 98.8 4.4E-07 9.5E-12 96.6 21.2 248 190-529 169-429 (641)
203 KOG0265 U5 snRNP-specific prot 98.8 2.6E-06 5.6E-11 85.1 25.0 252 189-568 48-304 (338)
204 cd00312 Esterase_lipase Estera 98.8 1.1E-08 2.4E-13 119.4 10.0 129 651-795 78-214 (493)
205 PTZ00421 coronin; Provisional 98.8 1.4E-06 3E-11 99.6 26.6 169 332-567 126-297 (493)
206 PLN00181 protein SPA1-RELATED; 98.8 2.9E-06 6.3E-11 105.0 31.6 163 315-528 556-727 (793)
207 PF00561 Abhydrolase_1: alpha/ 98.8 3.8E-09 8.3E-14 109.8 5.2 154 713-877 1-216 (230)
208 PF02239 Cytochrom_D1: Cytochr 98.8 2.5E-06 5.4E-11 94.2 27.0 184 218-490 15-203 (369)
209 PTZ00421 coronin; Provisional 98.8 7.5E-07 1.6E-11 101.8 22.6 203 110-440 77-289 (493)
210 COG3571 Predicted hydrolase of 98.8 5.9E-07 1.3E-11 81.2 16.9 166 703-896 34-210 (213)
211 COG5354 Uncharacterized protei 98.8 4.4E-06 9.6E-11 89.3 26.1 336 110-606 34-382 (561)
212 PF05728 UPF0227: Uncharacteri 98.7 4.4E-07 9.5E-12 89.1 16.8 122 758-894 58-186 (187)
213 KOG3847 Phospholipase A2 (plat 98.7 2.8E-07 6E-12 92.7 15.4 192 666-902 114-376 (399)
214 KOG0643 Translation initiation 98.7 2.8E-06 6.1E-11 83.4 21.9 278 110-488 12-318 (327)
215 KOG0639 Transducin-like enhanc 98.7 4.5E-07 9.7E-12 96.0 17.4 220 163-489 440-665 (705)
216 PF09752 DUF2048: Uncharacteri 98.7 5.8E-07 1.2E-11 94.4 17.9 213 652-895 77-347 (348)
217 KOG0284 Polyadenylation factor 98.7 1E-07 2.2E-12 98.6 11.8 268 110-528 98-369 (464)
218 KOG0645 WD40 repeat protein [G 98.7 1.2E-06 2.7E-11 86.1 18.4 196 190-485 16-223 (312)
219 PTZ00420 coronin; Provisional 98.7 7.8E-06 1.7E-10 94.1 28.1 118 332-490 126-249 (568)
220 KOG2314 Translation initiation 98.7 4E-06 8.8E-11 90.2 23.6 305 105-528 246-556 (698)
221 KOG0305 Anaphase promoting com 98.7 2.7E-06 5.8E-11 93.9 22.9 278 188-616 177-460 (484)
222 KOG0275 Conserved WD40 repeat- 98.7 1.3E-07 2.8E-12 94.4 11.5 257 111-473 216-497 (508)
223 KOG1274 WD40 repeat protein [G 98.7 1.5E-06 3.3E-11 99.0 20.7 257 110-475 15-290 (933)
224 KOG0645 WD40 repeat protein [G 98.7 2.9E-06 6.4E-11 83.6 19.5 150 332-528 62-214 (312)
225 KOG2139 WD40 repeat protein [G 98.7 7.3E-07 1.6E-11 91.0 16.0 107 189-354 196-303 (445)
226 KOG2315 Predicted translation 98.7 1.3E-05 2.8E-10 87.0 26.1 332 112-606 38-377 (566)
227 KOG0282 mRNA splicing factor [ 98.6 2.5E-07 5.4E-12 97.9 12.8 231 110-475 260-494 (503)
228 PTZ00420 coronin; Provisional 98.6 1.7E-05 3.7E-10 91.3 28.3 224 163-487 54-293 (568)
229 KOG0306 WD40-repeat-containing 98.6 3.3E-06 7.1E-11 94.1 21.1 266 110-529 375-654 (888)
230 KOG2048 WD40 repeat protein [G 98.6 0.00018 3.8E-09 80.0 34.2 156 110-377 27-187 (691)
231 KOG2624 Triglyceride lipase-ch 98.6 1.5E-06 3.2E-11 94.9 18.0 243 635-898 44-399 (403)
232 KOG2315 Predicted translation 98.6 5.2E-06 1.1E-10 89.9 20.0 242 111-475 128-374 (566)
233 COG5354 Uncharacterized protei 98.5 3.5E-05 7.7E-10 82.6 25.4 299 106-528 69-378 (561)
234 COG2819 Predicted hydrolase of 98.5 8.5E-06 1.8E-10 82.3 19.5 118 743-877 120-245 (264)
235 PF06433 Me-amine-dh_H: Methyl 98.5 1.7E-05 3.7E-10 83.2 22.3 275 106-491 33-322 (342)
236 COG4188 Predicted dienelactone 98.5 2.6E-07 5.7E-12 97.1 9.0 214 639-877 38-295 (365)
237 TIGR01839 PHA_synth_II poly(R) 98.5 4.4E-06 9.6E-11 94.1 18.9 87 703-795 238-329 (560)
238 KOG1274 WD40 repeat protein [G 98.5 1.4E-06 3E-11 99.3 14.9 190 102-417 91-289 (933)
239 PRK10115 protease 2; Provision 98.5 2.2E-05 4.8E-10 94.1 26.1 107 111-261 129-240 (686)
240 KOG2382 Predicted alpha/beta h 98.5 8.1E-07 1.7E-11 92.0 11.1 201 669-897 51-313 (315)
241 PF00135 COesterase: Carboxyle 98.5 2.4E-07 5.2E-12 109.9 8.3 129 652-793 109-244 (535)
242 COG2272 PnbA Carboxylesterase 98.5 3.6E-07 7.8E-12 99.3 8.2 128 652-795 80-218 (491)
243 KOG0283 WD40 repeat-containing 98.5 3.3E-06 7.2E-11 95.8 16.1 198 189-487 370-576 (712)
244 KOG0284 Polyadenylation factor 98.5 1.1E-06 2.3E-11 91.3 10.8 223 190-526 98-323 (464)
245 PF02273 Acyl_transf_2: Acyl t 98.4 1E-05 2.3E-10 79.1 16.3 206 644-878 7-239 (294)
246 KOG2139 WD40 repeat protein [G 98.4 7.3E-06 1.6E-10 83.9 15.8 157 332-530 196-366 (445)
247 KOG1539 WD repeat protein [Gen 98.4 0.00026 5.5E-09 80.5 28.7 352 163-615 267-646 (910)
248 PF10340 DUF2424: Protein of u 98.4 1.1E-05 2.3E-10 86.6 17.1 202 653-877 107-350 (374)
249 KOG0771 Prolactin regulatory e 98.4 7E-06 1.5E-10 86.1 15.0 196 100-415 136-341 (398)
250 KOG0288 WD40 repeat protein Ti 98.4 3.4E-06 7.4E-11 87.7 12.6 131 315-484 323-458 (459)
251 KOG0283 WD40 repeat-containing 98.4 1.7E-05 3.7E-10 90.2 19.2 163 314-528 392-565 (712)
252 KOG1273 WD40 repeat protein [G 98.4 8.1E-05 1.8E-09 75.0 20.9 260 190-572 25-292 (405)
253 COG1073 Hydrolases of the alph 98.3 2.5E-06 5.5E-11 92.5 11.4 78 817-898 218-298 (299)
254 COG4757 Predicted alpha/beta h 98.3 3.8E-06 8.2E-11 81.3 10.4 221 642-894 8-280 (281)
255 PF07433 DUF1513: Protein of u 98.3 0.00035 7.6E-09 72.7 25.2 225 190-491 6-249 (305)
256 PF08450 SGL: SMP-30/Gluconola 98.3 0.00022 4.7E-09 74.9 24.6 144 313-491 21-166 (246)
257 PF06057 VirJ: Bacterial virul 98.3 1.5E-05 3.3E-10 76.4 13.7 172 697-895 14-190 (192)
258 KOG0275 Conserved WD40 repeat- 98.3 8.2E-06 1.8E-10 81.9 12.1 247 190-567 215-474 (508)
259 KOG0319 WD40-repeat-containing 98.3 5E-05 1.1E-09 84.9 19.4 183 194-477 25-214 (775)
260 KOG2394 WD40 protein DMR-N9 [G 98.3 3.1E-05 6.6E-10 83.4 17.0 91 332-465 291-384 (636)
261 KOG0640 mRNA cleavage stimulat 98.3 4.2E-05 9.1E-10 76.7 16.8 198 189-488 113-336 (430)
262 COG3208 GrsT Predicted thioest 98.3 1.8E-05 3.9E-10 78.5 14.2 61 827-898 173-233 (244)
263 cd00707 Pancreat_lipase_like P 98.3 7.2E-06 1.6E-10 87.0 12.3 108 670-793 36-146 (275)
264 KOG1009 Chromatin assembly com 98.2 4.8E-05 1.1E-09 79.3 17.3 60 189-261 124-183 (434)
265 KOG0319 WD40-repeat-containing 98.2 0.00092 2E-08 75.2 28.0 364 110-623 194-583 (775)
266 KOG2106 Uncharacterized conser 98.2 0.001 2.2E-08 71.5 26.9 142 332-528 369-510 (626)
267 KOG2919 Guanine nucleotide-bin 98.2 4.2E-05 9.1E-10 77.4 15.8 129 315-477 134-272 (406)
268 KOG0306 WD40-repeat-containing 98.2 0.0004 8.7E-09 78.0 24.5 201 189-490 374-583 (888)
269 KOG0639 Transducin-like enhanc 98.2 2.2E-05 4.7E-10 83.6 14.1 235 107-486 464-703 (705)
270 PF06821 Ser_hydrolase: Serine 98.2 1.5E-05 3.3E-10 77.5 12.2 113 745-878 41-155 (171)
271 KOG1009 Chromatin assembly com 98.2 0.00015 3.4E-09 75.7 19.6 131 163-353 36-187 (434)
272 KOG2919 Guanine nucleotide-bin 98.2 0.00017 3.6E-09 73.2 19.0 116 332-490 208-328 (406)
273 KOG0640 mRNA cleavage stimulat 98.2 4.7E-05 1E-09 76.4 14.8 278 110-486 114-425 (430)
274 PF08450 SGL: SMP-30/Gluconola 98.2 0.00016 3.5E-09 75.9 20.1 213 164-474 23-244 (246)
275 KOG0278 Serine/threonine kinas 98.1 4.4E-05 9.6E-10 74.4 13.5 195 189-490 101-300 (334)
276 PF06342 DUF1057: Alpha/beta h 98.1 0.0003 6.5E-09 71.5 19.9 130 640-793 7-136 (297)
277 KOG1332 Vesicle coat complex C 98.1 0.00021 4.5E-09 69.8 17.5 233 163-490 33-289 (299)
278 KOG1553 Predicted alpha/beta h 98.1 5.8E-06 1.3E-10 84.2 7.1 179 639-845 214-398 (517)
279 PLN02919 haloacid dehalogenase 98.1 0.0014 3E-08 82.5 29.7 126 335-491 686-835 (1057)
280 KOG0277 Peroxisomal targeting 98.1 7.5E-05 1.6E-09 73.2 14.3 226 163-489 38-267 (311)
281 KOG2048 WD40 repeat protein [G 98.1 0.0019 4.2E-08 72.0 26.8 120 332-491 383-507 (691)
282 TIGR03230 lipo_lipase lipoprot 98.1 2.9E-05 6.2E-10 86.2 12.9 109 670-793 41-153 (442)
283 KOG2551 Phospholipase/carboxyh 98.1 2.8E-05 6E-10 75.6 11.0 123 743-899 92-222 (230)
284 KOG2564 Predicted acetyltransf 98.1 2E-05 4.4E-10 78.6 10.2 124 639-791 50-179 (343)
285 PF07433 DUF1513: Protein of u 98.1 0.00093 2E-08 69.6 22.8 248 164-490 29-286 (305)
286 KOG0643 Translation initiation 98.1 0.00089 1.9E-08 66.4 21.2 184 194-476 58-252 (327)
287 KOG0288 WD40 repeat protein Ti 98.1 9E-05 1.9E-09 77.5 15.2 213 110-416 221-449 (459)
288 COG2021 MET2 Homoserine acetyl 98.1 4.2E-05 9.1E-10 80.6 13.0 149 738-895 127-366 (368)
289 KOG0295 WD40 repeat-containing 98.1 5.8E-05 1.2E-09 77.6 13.5 229 163-488 130-365 (406)
290 KOG0295 WD40 repeat-containing 98.1 0.00011 2.4E-09 75.7 15.3 243 190-571 110-375 (406)
291 PF10142 PhoPQ_related: PhoPQ- 98.0 0.00033 7.2E-09 75.8 19.1 152 741-902 150-325 (367)
292 PLN02919 haloacid dehalogenase 98.0 0.0018 3.8E-08 81.5 28.3 126 334-491 742-890 (1057)
293 COG0596 MhpC Predicted hydrola 98.0 0.0001 2.2E-09 77.6 15.0 71 713-793 51-122 (282)
294 KOG1445 Tumor-specific antigen 98.0 0.00013 2.8E-09 79.9 15.2 222 163-474 603-832 (1012)
295 COG3386 Gluconolactonase [Carb 98.0 0.0042 9.1E-08 66.3 26.6 145 313-489 46-193 (307)
296 KOG1524 WD40 repeat-containing 98.0 0.001 2.2E-08 71.9 21.3 142 319-528 131-275 (737)
297 PF06433 Me-amine-dh_H: Methyl 98.0 0.0024 5.2E-08 67.4 23.5 92 163-261 17-112 (342)
298 KOG1524 WD40 repeat-containing 97.9 6.7E-05 1.5E-09 80.7 11.7 166 189-474 105-275 (737)
299 KOG0647 mRNA export protein (c 97.9 0.00073 1.6E-08 68.1 18.0 250 163-477 50-315 (347)
300 KOG1538 Uncharacterized conser 97.9 0.00043 9.3E-09 76.4 17.4 57 110-205 14-70 (1081)
301 KOG0641 WD40 repeat protein [G 97.9 0.0064 1.4E-07 58.6 22.9 139 312-491 161-305 (350)
302 PF03959 FSH1: Serine hydrolas 97.9 8.2E-05 1.8E-09 75.8 10.8 108 741-878 84-203 (212)
303 KOG0289 mRNA splicing factor [ 97.9 0.0008 1.7E-08 71.0 17.9 147 332-528 304-451 (506)
304 KOG1063 RNA polymerase II elon 97.9 0.0025 5.5E-08 71.3 22.6 79 396-486 523-601 (764)
305 KOG0310 Conserved WD40 repeat- 97.9 0.00095 2.1E-08 71.6 18.7 243 164-528 49-298 (487)
306 KOG1523 Actin-related protein 97.9 0.00042 9.1E-09 70.4 15.1 104 110-261 12-118 (361)
307 KOG0289 mRNA splicing factor [ 97.9 0.0012 2.5E-08 69.8 18.8 236 134-477 254-498 (506)
308 KOG0278 Serine/threonine kinas 97.8 0.00033 7.2E-09 68.5 13.0 177 110-411 102-280 (334)
309 KOG1007 WD repeat protein TSSC 97.8 0.00079 1.7E-08 67.3 15.7 113 190-374 125-245 (370)
310 PRK02888 nitrous-oxide reducta 97.8 0.0044 9.6E-08 70.7 23.7 212 190-490 126-352 (635)
311 KOG0299 U3 snoRNP-associated p 97.8 0.0027 5.9E-08 67.7 20.0 59 190-261 204-262 (479)
312 TIGR01849 PHB_depoly_PhaZ poly 97.8 0.00043 9.2E-09 76.2 14.8 70 826-897 333-406 (406)
313 PF10647 Gmad1: Lipoprotein Lp 97.8 0.00074 1.6E-08 70.7 16.1 104 110-261 25-129 (253)
314 KOG0313 Microtubule binding pr 97.8 0.0011 2.4E-08 68.9 16.6 280 96-474 93-407 (423)
315 PF12146 Hydrolase_4: Putative 97.8 7E-05 1.5E-09 62.2 6.6 75 649-747 1-78 (79)
316 PF10647 Gmad1: Lipoprotein Lp 97.8 0.0026 5.7E-08 66.5 20.0 59 190-261 25-83 (253)
317 PF04762 IKI3: IKI3 family; I 97.8 0.036 7.9E-07 68.6 32.8 83 316-417 239-323 (928)
318 KOG1538 Uncharacterized conser 97.8 0.0012 2.7E-08 73.0 17.5 58 190-261 14-71 (1081)
319 KOG1445 Tumor-specific antigen 97.7 0.0013 2.8E-08 72.4 17.4 139 312-490 650-799 (1012)
320 KOG3253 Predicted alpha/beta h 97.7 0.00049 1.1E-08 75.9 14.2 102 754-878 245-347 (784)
321 KOG0771 Prolactin regulatory e 97.7 0.00063 1.4E-08 71.8 14.5 73 400-490 283-357 (398)
322 PF05677 DUF818: Chlamydia CHL 97.7 0.00053 1.2E-08 71.5 13.7 123 638-780 111-236 (365)
323 KOG0641 WD40 repeat protein [G 97.7 0.0058 1.3E-07 58.9 19.5 112 333-487 233-349 (350)
324 KOG0316 Conserved WD40 repeat- 97.7 0.0026 5.7E-08 61.9 16.9 100 110-261 19-119 (307)
325 KOG0310 Conserved WD40 repeat- 97.7 0.0013 2.9E-08 70.5 16.2 196 95-416 95-297 (487)
326 TIGR03502 lipase_Pla1_cef extr 97.7 0.00026 5.6E-09 83.8 12.1 93 670-780 449-576 (792)
327 KOG0292 Vesicle coat complex C 97.7 0.02 4.4E-07 66.1 25.9 248 110-490 11-283 (1202)
328 COG3386 Gluconolactonase [Carb 97.6 0.025 5.3E-07 60.5 25.3 49 314-374 143-193 (307)
329 KOG0650 WD40 repeat nucleolar 97.6 0.00091 2E-08 73.3 14.3 121 313-474 545-679 (733)
330 PF04762 IKI3: IKI3 family; I 97.6 0.037 8E-07 68.6 29.9 111 400-528 211-323 (928)
331 COG3545 Predicted esterase of 97.6 0.0018 3.9E-08 60.9 14.2 118 758-895 58-177 (181)
332 PF11339 DUF3141: Protein of u 97.6 0.0022 4.8E-08 70.4 16.8 50 826-877 293-349 (581)
333 KOG2394 WD40 protein DMR-N9 [G 97.6 0.0079 1.7E-07 65.5 20.4 70 400-487 292-362 (636)
334 COG3243 PhaC Poly(3-hydroxyalk 97.6 0.00082 1.8E-08 72.0 12.9 88 703-795 130-218 (445)
335 KOG4378 Nuclear protein COP1 [ 97.5 0.0054 1.2E-07 65.9 18.1 145 332-528 122-269 (673)
336 PRK04940 hypothetical protein; 97.5 0.00093 2E-08 64.3 11.0 116 759-895 60-178 (180)
337 PRK02888 nitrous-oxide reducta 97.5 0.068 1.5E-06 61.3 27.3 38 326-375 315-352 (635)
338 KOG0316 Conserved WD40 repeat- 97.5 0.0037 8.1E-08 60.9 14.6 199 332-621 18-217 (307)
339 PF06028 DUF915: Alpha/beta hy 97.5 0.0013 2.8E-08 68.0 12.2 150 737-894 83-252 (255)
340 KOG0268 Sof1-like rRNA process 97.5 0.0014 3.1E-08 67.6 12.1 161 316-528 169-334 (433)
341 PF10230 DUF2305: Uncharacteri 97.4 0.002 4.3E-08 67.9 13.8 107 670-794 2-122 (266)
342 PF11144 DUF2920: Protein of u 97.4 0.0046 9.9E-08 66.9 16.2 137 734-872 157-333 (403)
343 COG1770 PtrB Protease II [Amin 97.4 0.064 1.4E-06 61.1 25.6 108 110-261 130-241 (682)
344 KOG0294 WD40 repeat-containing 97.4 0.011 2.5E-07 60.2 17.7 216 163-491 63-285 (362)
345 COG1506 DAP2 Dipeptidyl aminop 97.4 0.11 2.4E-06 62.2 29.7 266 107-488 58-343 (620)
346 KOG0307 Vesicle coat complex C 97.4 0.00086 1.9E-08 79.3 11.1 143 313-491 138-286 (1049)
347 KOG2110 Uncharacterized conser 97.4 0.0025 5.4E-08 66.3 13.0 135 163-375 106-249 (391)
348 KOG2106 Uncharacterized conser 97.4 0.25 5.5E-06 53.8 28.2 59 189-259 201-262 (626)
349 KOG0290 Conserved WD40 repeat- 97.4 0.025 5.4E-07 57.1 19.2 232 164-487 74-318 (364)
350 PF07676 PD40: WD40-like Beta 97.4 0.00038 8.2E-09 49.0 4.9 31 189-223 9-39 (39)
351 KOG1036 Mitotic spindle checkp 97.4 0.046 1E-06 55.8 21.2 90 110-253 15-104 (323)
352 KOG2110 Uncharacterized conser 97.3 0.035 7.6E-07 58.0 20.2 136 314-490 106-251 (391)
353 KOG0269 WD40 repeat-containing 97.3 0.0027 5.8E-08 72.0 13.2 206 163-465 110-319 (839)
354 KOG0264 Nucleosome remodeling 97.3 0.018 3.9E-07 61.6 18.4 229 163-487 147-404 (422)
355 KOG0313 Microtubule binding pr 97.3 0.03 6.5E-07 58.6 19.4 239 187-528 104-364 (423)
356 KOG1332 Vesicle coat complex C 97.3 0.032 7E-07 55.0 18.6 157 332-528 103-275 (299)
357 KOG0285 Pleiotropic regulator 97.3 0.038 8.3E-07 57.3 19.9 183 189-474 152-338 (460)
358 KOG1516 Carboxylesterase and r 97.3 0.00032 7E-09 83.1 6.2 126 652-793 97-231 (545)
359 COG4947 Uncharacterized protei 97.3 7.8E-05 1.7E-09 68.5 0.7 118 745-877 89-216 (227)
360 KOG1036 Mitotic spindle checkp 97.3 0.1 2.3E-06 53.3 22.6 109 190-375 15-125 (323)
361 KOG0264 Nucleosome remodeling 97.3 0.021 4.5E-07 61.2 18.5 240 102-416 127-391 (422)
362 KOG1539 WD repeat protein [Gen 97.2 0.012 2.5E-07 67.6 17.3 82 432-529 555-637 (910)
363 KOG1034 Transcriptional repres 97.2 0.0089 1.9E-07 61.2 14.4 115 190-378 91-215 (385)
364 TIGR02171 Fb_sc_TIGR02171 Fibr 97.2 0.019 4.2E-07 67.9 19.2 82 164-261 330-417 (912)
365 KOG0277 Peroxisomal targeting 97.2 0.022 4.9E-07 56.4 16.4 205 190-490 10-222 (311)
366 PF00975 Thioesterase: Thioest 97.2 0.0069 1.5E-07 62.7 14.0 82 704-793 19-103 (229)
367 KOG0290 Conserved WD40 repeat- 97.2 0.086 1.9E-06 53.4 20.3 238 190-528 46-306 (364)
368 KOG1007 WD repeat protein TSSC 97.1 0.042 9.1E-07 55.4 17.9 197 190-477 65-280 (370)
369 PF12048 DUF3530: Protein of u 97.1 0.05 1.1E-06 58.6 20.2 206 649-897 70-309 (310)
370 KOG4283 Transcription-coupled 97.1 0.15 3.3E-06 51.7 21.3 152 190-416 103-264 (397)
371 KOG0307 Vesicle coat complex C 97.1 0.0044 9.6E-08 73.5 12.5 169 332-565 117-289 (1049)
372 PF15492 Nbas_N: Neuroblastoma 97.1 0.11 2.4E-06 53.0 20.5 35 191-234 46-80 (282)
373 PF05705 DUF829: Eukaryotic pr 97.0 0.015 3.2E-07 60.7 15.2 65 828-894 176-240 (240)
374 PF07819 PGAP1: PGAP1-like pro 97.0 0.011 2.3E-07 60.6 13.4 54 740-793 63-122 (225)
375 KOG1408 WD40 repeat protein [F 97.0 0.031 6.6E-07 63.0 17.3 57 553-621 619-675 (1080)
376 KOG0268 Sof1-like rRNA process 97.0 0.016 3.4E-07 60.3 13.9 135 314-490 210-348 (433)
377 COG3150 Predicted esterase [Ge 97.0 0.012 2.5E-07 54.7 11.7 139 735-895 41-187 (191)
378 PTZ00472 serine carboxypeptida 97.0 0.0045 9.8E-08 70.6 11.4 150 641-795 51-217 (462)
379 KOG1963 WD40 repeat protein [G 97.0 0.29 6.2E-06 57.1 25.1 102 111-261 208-310 (792)
380 KOG1063 RNA polymerase II elon 96.9 0.0093 2E-07 66.9 12.7 109 111-261 528-636 (764)
381 PF05577 Peptidase_S28: Serine 96.9 0.0052 1.1E-07 70.4 11.0 88 705-795 51-149 (434)
382 KOG0303 Actin-binding protein 96.9 0.054 1.2E-06 57.0 17.0 52 314-378 154-207 (472)
383 COG3490 Uncharacterized protei 96.9 0.25 5.4E-06 50.2 20.8 125 332-478 114-247 (366)
384 KOG4378 Nuclear protein COP1 [ 96.9 0.04 8.8E-07 59.5 16.1 136 314-491 143-282 (673)
385 KOG0302 Ribosome Assembly prot 96.8 0.029 6.3E-07 58.6 14.6 127 327-490 252-381 (440)
386 PLN02733 phosphatidylcholine-s 96.8 0.0044 9.4E-08 69.6 9.6 87 703-795 112-202 (440)
387 KOG4283 Transcription-coupled 96.8 0.038 8.3E-07 55.8 14.7 159 152-377 113-279 (397)
388 KOG0292 Vesicle coat complex C 96.8 0.41 8.8E-06 55.9 24.5 200 190-490 11-239 (1202)
389 KOG4328 WD40 protein [Function 96.8 0.22 4.7E-06 53.7 21.0 229 163-491 210-452 (498)
390 PF07082 DUF1350: Protein of u 96.8 0.059 1.3E-06 54.4 16.0 185 654-877 8-205 (250)
391 KOG0294 WD40 repeat-containing 96.8 0.07 1.5E-06 54.7 16.3 79 163-261 107-186 (362)
392 KOG0285 Pleiotropic regulator 96.8 0.27 5.8E-06 51.3 20.4 233 144-491 154-391 (460)
393 KOG0276 Vesicle coat complex C 96.7 0.47 1E-05 53.3 23.4 230 108-474 13-246 (794)
394 KOG1523 Actin-related protein 96.7 0.02 4.4E-07 58.6 11.9 105 146-261 60-164 (361)
395 KOG0650 WD40 repeat nucleolar 96.6 0.027 5.9E-07 62.3 13.1 269 190-528 402-679 (733)
396 KOG0308 Conserved WD40 repeat- 96.6 0.034 7.4E-07 62.2 13.9 53 432-488 192-244 (735)
397 KOG0299 U3 snoRNP-associated p 96.6 0.039 8.4E-07 59.3 13.7 104 110-225 204-316 (479)
398 KOG1920 IkappaB kinase complex 96.6 0.56 1.2E-05 56.9 24.4 78 459-546 199-277 (1265)
399 TIGR02171 Fb_sc_TIGR02171 Fibr 96.6 0.15 3.3E-06 60.7 19.5 128 344-504 319-456 (912)
400 KOG1408 WD40 repeat protein [F 96.5 0.032 6.8E-07 62.9 13.1 116 333-488 598-714 (1080)
401 KOG4840 Predicted hydrolases o 96.5 0.097 2.1E-06 51.0 14.7 89 702-797 56-147 (299)
402 KOG0647 mRNA export protein (c 96.4 0.058 1.3E-06 54.9 13.1 116 332-490 28-146 (347)
403 KOG2041 WD40 repeat protein [G 96.4 0.26 5.7E-06 55.8 19.2 62 189-261 72-133 (1189)
404 PF07676 PD40: WD40-like Beta 96.4 0.0054 1.2E-07 43.0 4.3 37 449-485 2-39 (39)
405 KOG0321 WD40 repeat-containing 96.4 0.27 5.9E-06 55.2 19.1 60 189-261 101-162 (720)
406 KOG1920 IkappaB kinase complex 96.4 1.7 3.7E-05 53.0 26.8 58 190-261 70-127 (1265)
407 KOG4328 WD40 protein [Function 96.3 0.7 1.5E-05 50.0 20.9 154 332-528 235-388 (498)
408 PF06977 SdiA-regulated: SdiA- 96.3 0.44 9.6E-06 49.2 19.1 123 326-488 15-148 (248)
409 COG3391 Uncharacterized conser 96.3 0.76 1.7E-05 51.5 22.7 147 190-416 117-270 (381)
410 COG3391 Uncharacterized conser 96.2 0.49 1.1E-05 53.0 21.0 207 190-491 75-285 (381)
411 KOG1963 WD40 repeat protein [G 96.2 0.74 1.6E-05 53.9 21.9 106 334-476 208-313 (792)
412 PF00151 Lipase: Lipase; Inte 96.1 0.016 3.4E-07 62.9 8.0 109 670-793 71-186 (331)
413 KOG2321 WD40 repeat protein [G 96.1 0.44 9.6E-06 52.9 18.4 117 332-490 229-346 (703)
414 PF06977 SdiA-regulated: SdiA- 96.1 0.46 1E-05 49.1 18.0 59 190-260 23-81 (248)
415 KOG0646 WD40 repeat protein [G 96.0 0.22 4.7E-06 53.9 15.6 142 314-490 103-248 (476)
416 KOG0303 Actin-binding protein 96.0 0.69 1.5E-05 49.1 18.8 124 396-565 79-208 (472)
417 KOG4389 Acetylcholinesterase/B 96.0 0.01 2.2E-07 64.5 5.6 125 652-795 121-256 (601)
418 KOG0269 WD40 repeat-containing 95.9 0.48 1E-05 54.5 18.4 116 332-490 177-297 (839)
419 PF01674 Lipase_2: Lipase (cla 95.9 0.043 9.3E-07 55.4 9.3 70 703-779 20-95 (219)
420 COG2319 FOG: WD40 repeat [Gene 95.9 1.4 3E-05 49.4 23.3 240 111-491 68-316 (466)
421 COG4814 Uncharacterized protei 95.9 0.099 2.1E-06 52.3 11.4 144 740-896 119-286 (288)
422 PF08386 Abhydrolase_4: TAP-li 95.9 0.017 3.7E-07 50.9 5.6 60 830-896 34-93 (103)
423 PF15492 Nbas_N: Neuroblastoma 95.8 1.7 3.7E-05 44.6 20.1 39 332-383 44-82 (282)
424 PF03096 Ndr: Ndr family; Int 95.8 0.37 8.1E-06 50.1 15.8 220 644-896 4-278 (283)
425 KOG0300 WD40 repeat-containing 95.7 0.81 1.8E-05 46.9 17.1 54 161-227 168-222 (481)
426 KOG0267 Microtubule severing p 95.7 0.03 6.4E-07 63.4 7.7 81 163-261 92-172 (825)
427 KOG1034 Transcriptional repres 95.6 0.49 1.1E-05 49.0 15.2 85 163-261 115-199 (385)
428 KOG0308 Conserved WD40 repeat- 95.5 0.66 1.4E-05 52.4 17.2 99 365-499 192-294 (735)
429 KOG4388 Hormone-sensitive lipa 95.5 0.013 2.8E-07 64.6 4.2 90 670-779 396-489 (880)
430 COG3946 VirJ Type IV secretory 95.4 0.062 1.3E-06 57.4 8.7 174 696-896 271-448 (456)
431 COG3204 Uncharacterized protei 95.4 1.9 4.1E-05 44.6 18.6 119 332-489 86-212 (316)
432 KOG0646 WD40 repeat protein [G 95.4 0.62 1.3E-05 50.5 15.8 59 190-261 83-141 (476)
433 PF11187 DUF2974: Protein of u 95.3 0.021 4.5E-07 58.1 4.7 53 741-793 66-122 (224)
434 PF00450 Peptidase_S10: Serine 95.3 0.084 1.8E-06 60.3 10.2 150 641-795 15-182 (415)
435 KOG0281 Beta-TrCP (transducin 95.3 0.11 2.4E-06 53.6 9.6 211 159-488 213-429 (499)
436 KOG2111 Uncharacterized conser 95.2 1.8 4E-05 44.8 17.8 47 316-375 206-257 (346)
437 COG3490 Uncharacterized protei 95.2 3.5 7.5E-05 42.3 19.4 174 446-658 58-246 (366)
438 KOG0302 Ribosome Assembly prot 95.2 0.36 7.9E-06 50.8 13.0 139 162-374 233-378 (440)
439 KOG2321 WD40 repeat protein [G 95.1 0.89 1.9E-05 50.6 16.4 213 190-466 53-282 (703)
440 KOG2182 Hydrolytic enzymes of 94.9 0.25 5.4E-06 54.6 11.5 132 646-794 65-207 (514)
441 KOG3967 Uncharacterized conser 94.9 0.14 3.1E-06 49.4 8.5 78 703-782 135-213 (297)
442 PF04053 Coatomer_WDAD: Coatom 94.8 0.87 1.9E-05 51.5 16.2 37 315-352 127-165 (443)
443 KOG4532 WD40-like repeat conta 94.7 1.1 2.3E-05 45.3 14.2 108 111-261 161-270 (344)
444 KOG0276 Vesicle coat complex C 94.6 10 0.00022 43.1 24.6 100 110-259 57-157 (794)
445 PF13449 Phytase-like: Esteras 94.6 8.2 0.00018 42.2 22.9 148 334-490 87-252 (326)
446 PF13360 PQQ_2: PQQ-like domai 94.6 6.5 0.00014 40.5 23.3 14 552-565 222-235 (238)
447 PRK10252 entF enterobactin syn 94.6 0.37 7.9E-06 64.0 14.7 75 710-792 1092-1169(1296)
448 PRK13614 lipoprotein LpqB; Pro 94.5 1.3 2.9E-05 51.4 17.0 66 188-261 382-451 (573)
449 KOG2183 Prolylcarboxypeptidase 94.5 0.044 9.4E-07 58.6 4.5 56 736-791 144-199 (492)
450 COG3319 Thioesterase domains o 94.3 0.1 2.2E-06 54.0 6.8 72 713-792 27-101 (257)
451 PF07519 Tannase: Tannase and 94.2 0.52 1.1E-05 54.1 13.0 126 651-795 16-151 (474)
452 PF05694 SBP56: 56kDa selenium 94.2 4 8.8E-05 44.9 18.6 67 458-528 314-392 (461)
453 PRK13613 lipoprotein LpqB; Pro 94.2 7 0.00015 46.1 22.2 57 190-261 364-425 (599)
454 PF05990 DUF900: Alpha/beta hy 94.1 0.2 4.3E-06 51.7 8.5 83 739-843 75-166 (233)
455 KOG4547 WD40 repeat-containing 94.1 4.4 9.6E-05 45.6 19.0 97 217-379 78-177 (541)
456 PF13360 PQQ_2: PQQ-like domai 94.1 8.2 0.00018 39.7 22.1 34 197-239 33-66 (238)
457 COG3204 Uncharacterized protei 94.0 8.8 0.00019 39.9 19.9 67 180-260 79-145 (316)
458 KOG0267 Microtubule severing p 93.9 0.096 2.1E-06 59.5 5.9 113 315-467 93-208 (825)
459 KOG4227 WD40 repeat protein [G 93.9 3.7 8E-05 43.5 16.9 108 110-261 58-167 (609)
460 KOG0270 WD40 repeat-containing 93.8 7.5 0.00016 42.3 19.3 59 191-261 246-304 (463)
461 TIGR03300 assembly_YfgL outer 93.7 14 0.00031 41.2 31.1 56 552-623 289-344 (377)
462 KOG0281 Beta-TrCP (transducin 93.6 0.91 2E-05 47.2 11.7 198 163-477 257-469 (499)
463 KOG2111 Uncharacterized conser 93.4 5.5 0.00012 41.5 16.8 86 432-528 158-245 (346)
464 COG4782 Uncharacterized protei 93.4 0.31 6.8E-06 51.8 8.4 56 737-794 171-234 (377)
465 KOG2041 WD40 repeat protein [G 93.4 0.31 6.7E-06 55.3 8.6 31 323-353 250-280 (1189)
466 PF04053 Coatomer_WDAD: Coatom 93.2 0.69 1.5E-05 52.4 11.4 87 343-474 117-213 (443)
467 KOG2931 Differentiation-relate 93.2 3.2 7E-05 43.0 14.7 127 640-793 23-156 (326)
468 KOG2565 Predicted hydrolases o 92.9 0.41 8.9E-06 50.7 8.2 117 648-788 132-258 (469)
469 PRK13614 lipoprotein LpqB; Pro 92.9 5.4 0.00012 46.5 18.2 148 315-491 366-520 (573)
470 PRK13615 lipoprotein LpqB; Pro 92.8 3.3 7.1E-05 48.1 16.3 143 191-416 336-486 (557)
471 PLN02209 serine carboxypeptida 92.7 0.61 1.3E-05 52.8 10.1 151 640-795 42-213 (437)
472 PRK13613 lipoprotein LpqB; Pro 92.6 3.8 8.3E-05 48.3 16.8 107 110-261 364-472 (599)
473 PF11288 DUF3089: Protein of u 92.6 0.35 7.5E-06 48.0 6.9 67 713-780 46-116 (207)
474 PRK13615 lipoprotein LpqB; Pro 92.5 9.9 0.00021 44.3 19.6 134 322-491 363-504 (557)
475 COG2319 FOG: WD40 repeat [Gene 92.5 20 0.00044 39.7 25.1 160 316-527 136-302 (466)
476 PF01764 Lipase_3: Lipase (cla 92.4 0.3 6.5E-06 45.8 6.3 40 738-779 45-84 (140)
477 KOG1587 Cytoplasmic dynein int 92.4 24 0.00052 41.1 22.4 104 399-528 399-505 (555)
478 KOG2100 Dipeptidyl aminopeptid 92.4 18 0.00038 44.4 22.6 64 195-262 103-166 (755)
479 KOG1520 Predicted alkaloid syn 92.3 4.5 9.8E-05 43.6 15.2 121 190-352 116-239 (376)
480 cd00741 Lipase Lipase. Lipase 92.2 0.43 9.2E-06 45.7 7.0 52 739-792 10-65 (153)
481 TIGR02604 Piru_Ver_Nterm putat 92.1 5.4 0.00012 44.4 16.8 34 314-347 164-199 (367)
482 TIGR02604 Piru_Ver_Nterm putat 92.0 3.6 7.9E-05 45.8 15.2 66 401-470 126-198 (367)
483 KOG2445 Nuclear pore complex c 91.9 12 0.00026 38.9 16.8 71 111-224 16-90 (361)
484 TIGR03712 acc_sec_asp2 accesso 91.8 10 0.00023 42.3 17.6 144 734-897 336-499 (511)
485 PF05057 DUF676: Putative seri 91.5 0.17 3.6E-06 51.7 3.6 22 758-779 77-98 (217)
486 KOG1272 WD40-repeat-containing 91.3 0.52 1.1E-05 51.0 6.9 191 190-487 131-323 (545)
487 smart00824 PKS_TE Thioesterase 91.3 2.2 4.7E-05 42.8 11.7 35 758-792 63-100 (212)
488 PLN03016 sinapoylglucose-malat 91.2 0.91 2E-05 51.4 9.2 150 641-795 41-211 (433)
489 KOG1551 Uncharacterized conser 91.0 1.2 2.6E-05 44.9 8.6 66 825-897 296-366 (371)
490 KOG0321 WD40 repeat-containing 91.0 6 0.00013 45.0 14.8 57 163-228 122-178 (720)
491 KOG3914 WD repeat protein WDR4 90.8 2.9 6.3E-05 44.8 11.7 39 446-488 142-180 (390)
492 KOG2521 Uncharacterized conser 90.6 6.1 0.00013 42.8 14.2 70 830-901 225-294 (350)
493 KOG4532 WD40-like repeat conta 90.4 9.5 0.00021 38.8 14.1 116 334-491 161-284 (344)
494 KOG1214 Nidogen and related ba 90.4 17 0.00038 42.7 18.0 84 432-527 1089-1173(1289)
495 KOG3914 WD repeat protein WDR4 90.3 5.1 0.00011 43.0 13.0 38 219-261 132-169 (390)
496 PF11768 DUF3312: Protein of u 90.2 15 0.00033 41.8 17.3 141 314-489 184-329 (545)
497 KOG3975 Uncharacterized conser 90.2 9.1 0.0002 38.7 13.8 44 830-878 242-285 (301)
498 KOG1282 Serine carboxypeptidas 89.9 2.8 6E-05 47.3 11.4 150 641-795 48-214 (454)
499 KOG1912 WD40 repeat protein [G 89.8 34 0.00074 40.3 19.6 66 403-485 235-302 (1062)
500 PF07519 Tannase: Tannase and 89.6 0.45 9.8E-06 54.5 5.2 66 830-897 353-427 (474)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-44 Score=426.09 Aligned_cols=599 Identities=19% Similarity=0.258 Sum_probs=389.2
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
..+++....+..+.++|+|+.+++.... ++....... +.+|+.+.. ..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~-----~~~~~~d~~------~~~~ 55 (620)
T COG1506 6 AEDLLALARVSDPRVSPPGGRLAYILTG-------------------LDFLKPLYK-----SSLWVSDGK------TVRL 55 (620)
T ss_pred HHHHHhhhcccCcccCCCCceeEEeecc-------------------ccccccccc-----cceEEEecc------cccc
Confidence 4466677788999999999999999874 233222222 467774431 1111
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+.+..+..+.|||||+.++|... .+....++|+++.. | .++..... +....|+|+|+.+++.
T Consensus 56 ---~~~~~~~~~~~~spdg~~~~~~~~-----~~~~~~~l~l~~~~-g---~~~~~~~~-----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 56 ---LTFGGGVSELRWSPDGSVLAFVST-----DGGRVAQLYLVDVG-G---LITKTAFG-----VSDARWSPDGDRIAFL 118 (620)
T ss_pred ---cccCCcccccccCCCCCEEEEEec-----cCCCcceEEEEecC-C---ceeeeecc-----cccceeCCCCCeEEEE
Confidence 234457899999999999999872 13337899999987 4 22222221 5688999999999984
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCcccccccccc--ccceEEEEEeCCceeEcCCC-ccccccc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY--ATTQLVLVSLDGTVKEIGPP-AVYTSLD 338 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~--~~~~l~~~~~~G~~~~l~~~-~~~~~~~ 338 (954)
......... +. + .....+ +. .++... ...++|+++..+....+... ..+..+.
T Consensus 119 ~~~~~~~~~-------~~-----~--~~~~~~-----~~-----~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 174 (620)
T COG1506 119 TAEGASKRD-------GG-----D--HLFVDR-----LP-----VWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFA 174 (620)
T ss_pred ecccccccC-------Cc-----e--eeeecc-----cc-----eeecCCCCcccceEEEccCcccccccCCCCceeeee
Confidence 211110000 00 0 000000 00 001100 24568888884344444444 6666777
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
+.+|++.++........ ........++....+....++..+ .+...+.|.+||+.+++...
T Consensus 175 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 175 TDGDGRLVASIRLDDDA------DPWVTNLYVLIEGNGELESLTPGE-------------GSISKLAFDADGKSIALLGT 235 (620)
T ss_pred eCCCCceeEEeeecccc------CCceEeeEEEecCCCceEEEcCCC-------------ceeeeeeeCCCCCeeEEecc
Confidence 77778888777644320 111123334433334444444322 12345778999998777733
Q ss_pred eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
..+.+ . .....+++++. ..++. .. ..+..+ +..+ .. .
T Consensus 236 ~~~~~-~----~~~~~~~~~~~---~~~~~----------d~-~~~~~~-------------------~~~~--~~--~- 272 (620)
T COG1506 236 ESDRG-L----AEGDFILLLDG---ELGEV----------DG-DLSSGD-------------------DTRG--AW--A- 272 (620)
T ss_pred CCccC-c----cccceEEEEec---ccccc----------ce-eeccCC-------------------cccC--cH--H-
Confidence 22210 0 11122222220 00000 00 000000 0000 00 0
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccce
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYET 578 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 578 (954)
+...-++..++|..... . ....++..+...+....+......
T Consensus 273 ----------------~~~~~~~~~~~~~~~~~----------------~-g~~~l~~~~~~~~~~~~~~~~~~~----- 314 (620)
T COG1506 273 ----------------VEGGLDGDGLLFIATDG----------------G-GSSPLFRVDDLGGGVEGLSGDDGG----- 314 (620)
T ss_pred ----------------hccccCCCcEEEEEecC----------------C-CceEEEEEeccCCceeeecCCCce-----
Confidence 00112333344433110 0 011122222222222222222111
Q ss_pred eEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCC-CCCCcCCCceEEEEEEcCCCeEEEEEEE
Q 002194 579 TVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH-PYPQLASLQKELIKYQRKDGVQLSATLY 657 (954)
Q Consensus 579 ~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~l~ 657 (954)
-..|+.+++.+++..+++..|+++|+++. ++..+++..+. .+......++|.+++++.||.+|+++++
T Consensus 315 ---------v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~ 383 (620)
T COG1506 315 ---------VPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLY 383 (620)
T ss_pred ---------EEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEe
Confidence 13466689999999999999999999986 55556655443 3456777889999999999999999999
Q ss_pred cCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hh
Q 002194 658 LPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DR 734 (954)
Q Consensus 658 ~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~ 734 (954)
+|+++++.++ +|+||++||||..... .. .....+.|+++||+|+.++++|+.|||+++.. ..
T Consensus 384 ~P~~~~~~k~--yP~i~~~hGGP~~~~~---------~~----~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~ 448 (620)
T COG1506 384 KPPGFDPRKK--YPLIVYIHGGPSAQVG---------YS----FNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGD 448 (620)
T ss_pred cCCCCCCCCC--CCEEEEeCCCCccccc---------cc----cchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhc
Confidence 9999988775 9999999999843221 11 12467889999999999999999999998765 35
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcccc-------
Q 002194 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED------- 807 (954)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~------- 807 (954)
++...++|+++++++|.+++.+|++||+|+|+|+||+|+++++++.| +|+|+++..+.+++......+....
T Consensus 449 ~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (620)
T COG1506 449 WGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEEN 527 (620)
T ss_pred cCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHh
Confidence 56678999999999999999999999999999999999999999996 8999999888777544332221111
Q ss_pred -chhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 808 -RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 808 -~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
...|.+.+.|.+.||+.++.++++|+|||||++|.+|| ++|+.+|+++|+.+|+++++++||+++|++...++....
T Consensus 528 ~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~ 605 (620)
T COG1506 528 GGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKV 605 (620)
T ss_pred CCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHH
Confidence 11111677899999999999999999999999999999 999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHhccc
Q 002194 887 LWETDRWLQKYCVS 900 (954)
Q Consensus 887 ~~~i~~fl~~~l~~ 900 (954)
++++++||++|++.
T Consensus 606 ~~~~~~~~~~~~~~ 619 (620)
T COG1506 606 LKEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=1.4e-40 Score=392.29 Aligned_cols=322 Identities=18% Similarity=0.131 Sum_probs=243.7
Q ss_pred CCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCC
Q 002194 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (954)
Q Consensus 551 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (954)
...|+++|+++++.+.|.-.... ....++ .+.+++++.+++..+++..|.++|.+++.+++.+.|+..+.+
T Consensus 337 ~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~~----~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~ 407 (686)
T PRK10115 337 LTSLRQINRKTREVIGIAFDDPA-----YVTWIA----YNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVP 407 (686)
T ss_pred EEEEEEEcCCCCceEEecCCCCc-----eEeeec----ccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCC
Confidence 45688899887777766522211 111111 123366788999999999999999999988888888876543
Q ss_pred CCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH
Q 002194 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 710 (954)
......+.++.+++++.||.+|+++++.|+.... +++.|+||++|||+.....+ .| ....+.|++
T Consensus 408 ~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~--~~~~P~ll~~hGg~~~~~~p---------~f----~~~~~~l~~ 472 (686)
T PRK10115 408 GFDAANYRSEHLWITARDGVEVPVSLVYHRKHFR--KGHNPLLVYGYGSYGASIDA---------DF----SFSRLSLLD 472 (686)
T ss_pred CcCccccEEEEEEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEECCCCCCCCC---------Cc----cHHHHHHHH
Confidence 2222356899999999999999997666544322 23579999999997543221 12 134568999
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE
Q 002194 711 RGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (954)
+||+|+.++.+|+.|+|+.+..... ....++|+++++++|++++++|++|++++|.|+||+|++++++++|++|+|+
T Consensus 473 rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~ 552 (686)
T PRK10115 473 RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGV 552 (686)
T ss_pred CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEE
Confidence 9999999999999999998765322 2256999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCC------CCC--Cccccchhhhc--HHHHHhcCcccccCCCCCC-EEEEEeCCCCCCCCchHHHHHHHH
Q 002194 788 IARSGAYNRTLT------PFG--FQNEDRTLWEA--TSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 788 v~~~~~~~~~~~------~~~--~~~~~~~~~~~--~~~~~~~sp~~~~~~~~~P-~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
|+.+|++|+... +.. ...+.+.+++. .+.+.++||+.++++++.| +||+||.+|.+|| +.++.++++
T Consensus 553 v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a 630 (686)
T PRK10115 553 IAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVA 630 (686)
T ss_pred EecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHH
Confidence 999999986532 111 11223444422 3345679999999999999 6788999999999 999999999
Q ss_pred HHHhCCCcEEEEEe---CCCCCcCCCcccHHHH---HHHHHHHHHHhccc
Q 002194 857 ALKGHGALCRLVIL---PFESHGYAARESIMHV---LWETDRWLQKYCVS 900 (954)
Q Consensus 857 ~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~---~~~i~~fl~~~l~~ 900 (954)
+|+..+++++++++ +++||+. ..+.... ....+.|+-..+..
T Consensus 631 ~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 631 KLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888888 9999984 3333333 33457888877643
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-32 Score=288.73 Aligned_cols=350 Identities=20% Similarity=0.226 Sum_probs=272.6
Q ss_pred CCcEEEEEEee--ccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCC
Q 002194 520 TGTYVIAKIKK--ENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL 596 (954)
Q Consensus 520 dG~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 596 (954)
.|.|-+-...+ .|+...-+||.+..++|-. .+||+.... .|+..++|...-. .. ..++.+=+
T Consensus 498 SgeweVl~r~Gi~VdE~~~LVYf~gt~d~PlE--~hLyvvsye~~g~~~rlt~~g~s---h~----------~~l~~~~d 562 (867)
T KOG2281|consen 498 SGEWEVLARHGIWVDEVRKLVYFVGTKDTPLE--HHLYVVSYENPGEIARLTEPGYS---HS----------CELDQQCD 562 (867)
T ss_pred ccceeehhhcCeeecccceEEEEEccCCCCce--eeEEEEEEecCCceeeccCCCcc---cc----------hhhhhhhh
Confidence 45665555554 5667778899998887744 379999988 9999999987621 11 12444445
Q ss_pred EEEEEEecCCCCceEEEEECCCCceeEeecCC--------CCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCC
Q 002194 597 KILTSKESKTENTQYYIQSWPDKKSCQITDFP--------HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (954)
Q Consensus 597 ~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~--------~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~ 668 (954)
.++...++...|+.+.++.+.+++...+-... ...++-+..++|.|.|.+..|..+.|.+|+|.++++++|
T Consensus 563 ~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk- 641 (867)
T KOG2281|consen 563 HFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK- 641 (867)
T ss_pred hHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC-
Confidence 57777788888888777776554432221100 111222233458888999889999999999999999986
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEA 745 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~ 745 (954)
+|+|+++||||.. |+.. |.|.+........||++||.|+..+.+|+.-+|.++- ....+.-+++|..+
T Consensus 642 -Yptvl~VYGGP~V------QlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVe 712 (867)
T KOG2281|consen 642 -YPTVLNVYGGPGV------QLVN--NSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVE 712 (867)
T ss_pred -CceEEEEcCCCce------EEee--ccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHH
Confidence 9999999999854 4433 5676666666778999999999988888877777643 24455667999999
Q ss_pred HHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcccc-chhhhcHHHHHhcCcc
Q 002194 746 AVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPF 823 (954)
Q Consensus 746 av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~ 823 (954)
++++|.++ +++|.+||+|.|+||||+|++++++++|+.|+++|+.+|+.+|..++-+++... +.+-.+...|..-|..
T Consensus 713 glq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~ 792 (867)
T KOG2281|consen 713 GLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVA 792 (867)
T ss_pred HHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHH
Confidence 99999998 599999999999999999999999999999999999999999888776665442 3333455667777777
Q ss_pred cccCCCC---CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 824 MSANKLK---KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 824 ~~~~~~~---~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.++.++. ..+|++||-.|++|+ +.+...+..+|.++|++.++++||++-|.+...++....-.+++.|+++
T Consensus 793 ~~VeklpdepnRLlLvHGliDENVH--F~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 793 GHVEKLPDEPNRLLLVHGLIDENVH--FAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHhhCCCCCceEEEEecccccchh--hhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 7787774 459999999999999 9999999999999999999999999999998888888887889999876
No 4
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-30 Score=303.74 Aligned_cols=352 Identities=25% Similarity=0.295 Sum_probs=256.3
Q ss_pred CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEE
Q 002194 520 TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (954)
Q Consensus 520 dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (954)
-|+|-+......+.....+||..... .....+||.+++.+.....++..... ..... ...+++...+.++
T Consensus 384 ~g~w~v~~i~~~~~~~~~i~f~~~~~--~~~~~~ly~i~~~~~~~~~lt~~~~~---~~~~~-----~~~~~~~~~~~~v 453 (755)
T KOG2100|consen 384 SGNWEVTSILGYDKDSNRIYFDAYEE--DPSERHLYSISLGSGTVESLTCSLIT---GPCTY-----LSVSFSKSAKYYV 453 (755)
T ss_pred ccceEEEEeccccCCCceEEEEecCC--CCCceEEEEEEccccccccccccCCC---CcceE-----EEEecCCcccEEE
Confidence 34444443333333344444444332 12356799999998887777665532 00111 1245677778888
Q ss_pred EEEecCCCCce-EEEEECCCCc-eeEeecCCCCCC----CcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEE
Q 002194 600 TSKESKTENTQ-YYIQSWPDKK-SCQITDFPHPYP----QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCL 673 (954)
Q Consensus 600 ~~~~s~~~p~~-l~~~~~~~g~-~~~Lt~~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~v 673 (954)
..+.++..|.. +-..+....+ ...|. .+..+. .......+..+++. +|....+.+.+|+++++.++ +|+|
T Consensus 454 ~~~~gP~~p~~~~~~~~~~~~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~k--yPll 529 (755)
T KOG2100|consen 454 LSCSGPKVPDGQLTRHSSKNSKTIVVLE-TNEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSKK--YPLL 529 (755)
T ss_pred EEccCCCCCcceeeccccccceEEEEec-cChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCC--CCEE
Confidence 88888888754 2222212222 22222 222221 12222233333333 89999999999999988774 9999
Q ss_pred EEECCCCCcCcccCccccCCCCCCCCcccHHHH-HHHHCCcEEEEcCCCCCCCCCCccc---chhhHHHHHHHHHHHHHH
Q 002194 674 FWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVL-LWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEE 749 (954)
Q Consensus 674 v~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~av~~ 749 (954)
|.+||||... ++.. .| ...+.. .+...|++|+..+++|+.|+|..+. ...++...++|.+.++++
T Consensus 530 v~~yGGP~sq-----~v~~---~~---~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~ 598 (755)
T KOG2100|consen 530 VVVYGGPGSQ-----SVTS---KF---SVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKK 598 (755)
T ss_pred EEecCCCCcc-----eeee---eE---EecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHH
Confidence 9999998521 1111 11 111222 4556999999999999999999854 456677889999999999
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-CcccEEEEeccCCCCCCCCCCCcccc-chhhhcHHHHHhcCcccccC
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-HLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPFMSAN 827 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-~~~~a~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~~ 827 (954)
+.+++++|++||+|+|+|+||+|+++++.++| +.|+|+|+++|++|+.+..-.+..+. +.++++...|.+.++...++
T Consensus 599 ~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~ 678 (755)
T KOG2100|consen 599 VLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPAN 678 (755)
T ss_pred HHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhh
Confidence 99999999999999999999999999999998 78999999999999885544443333 45566666699999999999
Q ss_pred CCCCCE-EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 828 KLKKPI-LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 828 ~~~~P~-Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.++.|. |++||+.|.+|+ ++++.+++++|+.+|+++++++||+++|++.......+++..+..||..++
T Consensus 679 ~~~~~~~LliHGt~DdnVh--~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 679 NIKTPKLLLIHGTEDDNVH--FQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred hhccCCEEEEEcCCcCCcC--HHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999887 999999999999 999999999999999999999999999999888888999999999999554
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.97 E-value=4.8e-26 Score=248.45 Aligned_cols=302 Identities=20% Similarity=0.210 Sum_probs=219.3
Q ss_pred CCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCC
Q 002194 550 NIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPH 629 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~ 629 (954)
..+.|++++.++++.+-|.-.+.. |. .. ++ .+-.++...+.+..+|.++|.+++.+|+.+++.+.|.+..-
T Consensus 338 glp~v~v~~~~~~~~~~i~f~~~a-y~---~~-l~----~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV 408 (682)
T COG1770 338 GLPRVVVRDRKTGEERGIAFDDEA-YS---AG-LS----GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEV 408 (682)
T ss_pred CCceEEEEecCCCceeeEEecchh-hh---cc-cc----CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccC
Confidence 367899999988887776544422 11 00 01 22345678999999999999999999999999888876543
Q ss_pred CC-CCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH
Q 002194 630 PY-PQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW 708 (954)
Q Consensus 630 ~~-~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 708 (954)
+- .+-..+..++++.+..||++|+..|+.-+++ ..+++.|++++.||.+..+.++ .|+ .....|
T Consensus 409 ~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~--~~~g~~p~lLygYGaYG~s~~p---------~Fs----~~~lSL 473 (682)
T COG1770 409 PGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT--KLDGSAPLLLYGYGAYGISMDP---------SFS----IARLSL 473 (682)
T ss_pred CCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc--CCCCCCcEEEEEeccccccCCc---------Ccc----cceeee
Confidence 32 2334577899999999999999999987663 3456799999999976544332 232 234468
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccc-hhhH--HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAN-DRFV--EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~-~~~~--~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~ 785 (954)
+++||+.....-+|..-.|+.+.. .... ..-+.|+++|+++|.++++.++++|+++|.|+||.++..++.+.|++|+
T Consensus 474 lDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~ 553 (682)
T COG1770 474 LDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFA 553 (682)
T ss_pred ecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhh
Confidence 899976665444444334444322 1111 1348999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCC----CccccchhhhcH------HHHHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHH
Q 002194 786 CGIARSGAYNRTLTPFG----FQNEDRTLWEAT------STYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
++|+..|+.|...+... +.......|.++ +....+||+.++..-. .|+|++.|.+|++|. +++..++
T Consensus 554 ~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAKW 631 (682)
T COG1770 554 GIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAKW 631 (682)
T ss_pred heeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHHH
Confidence 99999999884332211 111222334332 3446789999988755 478999999999999 9999999
Q ss_pred HHHHHhCCC---cEEEEEeCCCCCcC
Q 002194 855 FNALKGHGA---LCRLVILPFESHGY 877 (954)
Q Consensus 855 ~~~l~~~g~---~~~~~~~~~~~H~~ 877 (954)
.++|+..+. ++-|..-.++||+-
T Consensus 632 vAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 632 VAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHhhcccCCCcEEEEecccccCCC
Confidence 999998753 44555556789975
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.95 E-value=4.3e-27 Score=241.74 Aligned_cols=196 Identities=26% Similarity=0.398 Sum_probs=166.2
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
...+.|+++||+|+.++++++.|+|..+.. ..+....++|+.+++++|++++.+|++||+|+|+|+||++++.++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 356788899999999999999999887543 45567889999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEeccCCCCCCCCCC---Ccc----ccchhhhcHHHHHhcCcccccCC--CCCCEEEEEeCCCCCCCCchHH
Q 002194 780 APHLFCCGIARSGAYNRTLTPFG---FQN----EDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~~~ 850 (954)
+|++|+|+|+.+|++|....... +.. .....+...+.|...+|+..+.+ +++|+||+||++|.+|| +.+
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~ 162 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQ 162 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHH
Confidence 99999999999999886543211 111 11333456777888899999998 89999999999999999 999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
+.+++++|+..|+++++++||+++|.+...+...+..+++++||+++|+.
T Consensus 163 s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 163 SLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999887888889999999999999864
No 7
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=6e-24 Score=239.25 Aligned_cols=283 Identities=14% Similarity=0.120 Sum_probs=195.7
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeee
Q 002194 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ 183 (954)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt 183 (954)
+.+...-...+.++ +++|||+... .+.+.+... ..||+.+. || +..++||
T Consensus 132 D~~~~~~tg~~g~~--~~~iayv~~~-------------------~~~~~~~~~-----~~l~~~d~--dG--~~~~~lt 181 (428)
T PRK01029 132 DTIHYALTGVPGIS--SGKIIFSLST-------------------TNSDTELKQ-----GELWSVDY--DG--QNLRPLT 181 (428)
T ss_pred HHHHHHHcCCCccc--cCEEEEEEee-------------------CCccccccc-----ceEEEEcC--CC--CCceEcc
Confidence 33333334556666 9999999874 333332222 48999887 55 6778887
Q ss_pred cCCCCCcccceeecCCCCe--EEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 184 GFPDGAKLNFVTWSQDGKH--LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 184 ~~~~~~~~~~~~wSPDG~~--iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
. ....+..|+|||||++ ++|++. .++..+||++++++|+.++++..+.. ...+.|||||+.|+|+
T Consensus 182 ~--~~~~~~sP~wSPDG~~~~~~y~S~------~~g~~~I~~~~l~~g~~~~lt~~~g~-----~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 182 Q--EHSLSITPTWMHIGSGFPYLYVSY------KLGVPKIFLGSLENPAGKKILALQGN-----QLMPTFSPRKKLLAFI 248 (428)
T ss_pred c--CCCCcccceEccCCCceEEEEEEc------cCCCceEEEEECCCCCceEeecCCCC-----ccceEECCCCCEEEEE
Confidence 5 2246789999999998 555664 44678999999999999999887664 3479999999999988
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE--EEe-C---CceeEcCCC--cc
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL--VSL-D---GTVKEIGPP--AV 333 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~--~~~-~---G~~~~l~~~--~~ 333 (954)
.... +..++|+ +++ + |+.++++.. +.
T Consensus 249 s~~~----------------------------------------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~ 282 (428)
T PRK01029 249 SDRY----------------------------------------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGT 282 (428)
T ss_pred ECCC----------------------------------------------CCcceeEEEeecccCCCCcceEeecCCCCC
Confidence 2110 1123444 344 3 466777754 34
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
...++|||||++|+|.+...+ ..++|+++++ ++..+.++... .....+.|||||+
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~-------------~~~~~p~wSPDG~ 339 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY-------------RNSSCPAWSPDGK 339 (428)
T ss_pred cCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC-------------CCccceeECCCCC
Confidence 578999999999999985432 1278888876 34456666532 1224678999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.|+|.... .+...|+++++ ++++.++++.....+..+.|||||+.|+|.....+ ...||.++++++
T Consensus 340 ~Laf~~~~----------~g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g-~~~L~~vdl~~g 405 (428)
T PRK01029 340 KIAFCSVI----------KGVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSN-ESELYLISLITK 405 (428)
T ss_pred EEEEEEcC----------CCCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCCEEEEEECCCC-CceEEEEECCCC
Confidence 99997321 12357999996 77888888876666788999999999999876544 378999999985
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCC
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTG 521 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG 521 (954)
+.+.++..... ... ++|||-.
T Consensus 406 --~~~~Lt~~~g~-~~~------p~Ws~~~ 426 (428)
T PRK01029 406 --KTRKIVIGSGE-KRF------PSWGAFP 426 (428)
T ss_pred --CEEEeecCCCc-ccC------ceecCCC
Confidence 45566543322 111 6788754
No 8
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1e-22 Score=232.14 Aligned_cols=235 Identities=16% Similarity=0.201 Sum_probs=176.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
.+||+++. +| ...++++. ....+..|+|||||++|+|++. .++..+||++|+++|+.++++..++.
T Consensus 182 ~~l~~~d~--dg--~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~------~~g~~~i~~~dl~~g~~~~l~~~~g~-- 247 (435)
T PRK05137 182 KRLAIMDQ--DG--ANVRYLTD--GSSLVLTPRFSPNRQEITYMSY------ANGRPRVYLLDLETGQRELVGNFPGM-- 247 (435)
T ss_pred eEEEEECC--CC--CCcEEEec--CCCCeEeeEECCCCCEEEEEEe------cCCCCEEEEEECCCCcEEEeecCCCc--
Confidence 48999987 44 56677764 2346889999999999999874 33568999999999999888866543
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 248 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 278 (435)
T PRK05137 248 ---TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMDLR 278 (435)
T ss_pred ---ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 4589999999999887210 0 3456999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|..++++.. +....+.|||||++|+|.++..+ ..+||++|++++..++++... ..
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~-------------~~ 335 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGG-------------GR 335 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCC-------------Cc
Confidence 8888999877 56678999999999999985432 238999999998888887532 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...+.|||||+.|+|... + .+...|+++++ +++..+.++.. ..+..++|||||+.|+|.....+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~--~--------~~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQ--G--------GGQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ccCeEECCCCCEEEEEEc--C--------CCceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCCCC
Confidence 245789999999998731 1 12347889985 66666666543 3577899999999999988655431
Q ss_pred --eEEEEEcCCCCCCCcEEEe
Q 002194 481 --TRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 481 --~~l~~~d~~~~~~~~~~l~ 499 (954)
..||.++++++ ..+.+.
T Consensus 402 ~~~~L~~~dl~g~--~~~~l~ 420 (435)
T PRK05137 402 GAPKLYTVDLTGR--NEREVP 420 (435)
T ss_pred CcceEEEEECCCC--ceEEcc
Confidence 57999999885 334443
No 9
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.8e-22 Score=226.98 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=175.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
.+||+++. || ...++++. ....+..|+|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 179 ~~l~~~d~--dg--~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~------~~g~~~i~i~dl~~G~~~~l~~~~~~-- 244 (429)
T PRK03629 179 YELRVSDY--DG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 244 (429)
T ss_pred eeEEEEcC--CC--CCCEEeec--CCCceeeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEccCCCCC--
Confidence 48999998 44 55667764 2246889999999999999864 34567999999999999999866553
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++|+
T Consensus 245 ---~~~~~~SPDG~~La~~~~~---------------------------------------~-------g~~~I~~~d~~ 275 (429)
T PRK03629 245 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 275 (429)
T ss_pred ---cCCeEECCCCCEEEEEEcC---------------------------------------C-------CCcEEEEEECC
Confidence 4579999999999987210 0 3346999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. .....+.|||||++|+|++++.. ..+||++++++++.++++... ..
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~-------------~~ 332 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEG-------------SQ 332 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCC-------------CC
Confidence 8888899877 66788999999999999985432 127889999988877776422 11
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...+.|||||+.|+|.... .....|+++++ ++++.+.|+.. .....+.|||||+.|+|.+.+.+ .
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~ 397 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM-G 397 (429)
T ss_pred ccCEEECCCCCEEEEEEcc----------CCCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC-c
Confidence 2357899999999887221 12347899996 67777888743 34567999999999999987654 3
Q ss_pred eEEEEEcCCCCCCCcEEEe
Q 002194 481 TRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~ 499 (954)
..|++++++++ ..+.+.
T Consensus 398 ~~l~~~~~~G~--~~~~l~ 414 (429)
T PRK03629 398 SVLNLVSTDGR--FKARLP 414 (429)
T ss_pred eEEEEEECCCC--CeEECc
Confidence 67999999874 334443
No 10
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.5e-22 Score=226.12 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=185.9
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEE--EEEecCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL--VCTIPLLRGDPP 270 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l--~~~~~~~~~~~~ 270 (954)
.+..+ +++|||+....+...+....+||++|.+|+..++||..... ...+.|||||+.+ +|++.
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~------- 206 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSY------- 206 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEc-------
Confidence 34455 88999998754222222367999999999999999986553 4589999999864 33411
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (954)
.. +..+||++++ +|+.++++.. +....+.|||||++|+|
T Consensus 207 -------------------------------~~--------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 207 -------------------------------KL--------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAF 247 (428)
T ss_pred -------------------------------cC--------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEE
Confidence 00 3467999999 8888888876 66678999999999999
Q ss_pred EeecCCcccccccCCCCcceEE--EeccC---ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGV--WTTDG---IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l--~d~~g---~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
++...+. .++++ |++++ +..++++.... .....++|||||+.|+|..+.
T Consensus 248 ~s~~~g~----------~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~Laf~s~~---- 301 (428)
T PRK01029 248 ISDRYGN----------PDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTRLVFVSNK---- 301 (428)
T ss_pred EECCCCC----------cceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCEEEEEECC----
Confidence 9854321 14555 45553 35566664221 112357899999999997332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
++...||+++++ ..++..++++.....+..+.|||||++|+|....++ ..+||++|++++ +.+.++....
T Consensus 302 ------~g~~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g--~~~~Lt~~~~ 371 (428)
T PRK01029 302 ------DGRPRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATG--RDYQLTTSPE 371 (428)
T ss_pred ------CCCceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCC--CeEEccCCCC
Confidence 123478888851 123456777766666678999999999999876554 368999999886 4566664321
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
.... +.|+|||++|+|.... .....||++|+++++.++|+...+
T Consensus 372 -~~~~------p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 372 -NKES------PSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred -Cccc------eEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCCC
Confidence 1111 7899999999998621 123469999999999999987554
No 11
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-20 Score=204.85 Aligned_cols=290 Identities=20% Similarity=0.236 Sum_probs=211.2
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCcee--EeecCCCCCCC--cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCC
Q 002194 593 LNQLKILTSKESKTENTQYYIQSWPDKKSC--QITDFPHPYPQ--LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (954)
Q Consensus 593 ~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~--~Lt~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~ 668 (954)
.+.+.+.|..+|+.+|+.||.+|+.+++.+ .+.+....++. -+.+..+++++++.||.+|++.|+.-+.. +..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg 468 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDG 468 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcC
Confidence 346789999999999999999999988432 22222232333 34568999999999999999999985442 2334
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhH---HHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFV---EQLVACAEA 745 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~---~~~~~D~~~ 745 (954)
+.|++++.|||+.-+.+++ |. .....|.++|++....+-||..++|..+...... .+.++|+++
T Consensus 469 ~~P~LLygYGay~isl~p~---------f~----~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDPS---------FR----ASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CCceEEEEecccceeeccc---------cc----cceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 6899999999864443332 21 1123567799988888888888888887643222 245899999
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC----CCccccchhhhcH---HHHH
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF----GFQNEDRTLWEAT---STYV 818 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~ 818 (954)
+++||++++++.|+++++.|.|.||.++..++.++|++|+|+|+..|+.|...+.. -.+.+....|.++ +.+.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~ 615 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLI 615 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988543211 1112222233333 3455
Q ss_pred hcCcccccCCCC-----CCEEEEEeCCCCCCCCchHHHHHHHHHHHhC-------CCcEEEEEeCCCCCcCCCccc-HHH
Q 002194 819 EMSPFMSANKLK-----KPILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GALCRLVILPFESHGYAARES-IMH 885 (954)
Q Consensus 819 ~~sp~~~~~~~~-----~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~~~~~-~~~ 885 (954)
.++|+..+++++ .-+||..+.+|.+|+ +.++.++.++|+.. ..++-+.+..++||+...... ..+
T Consensus 616 ~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~ 693 (712)
T KOG2237|consen 616 KISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIE 693 (712)
T ss_pred eecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHH
Confidence 566666666553 348999999999998 99999999999875 135788889999998743322 223
Q ss_pred HHHHHHHHHHHhcc
Q 002194 886 VLWETDRWLQKYCV 899 (954)
Q Consensus 886 ~~~~i~~fl~~~l~ 899 (954)
....+++||.+.+.
T Consensus 694 E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 694 EAAFRYAFLAKMLN 707 (712)
T ss_pred HHHHHHHHHHHHhc
Confidence 33446777777653
No 12
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=6.9e-22 Score=220.71 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=172.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCe-EEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKH-LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~-iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.+||+.|. || ...++++. .+ ....|.|||||++ ++|++. .++..+||++|+.+|+.++++..++.
T Consensus 169 ~~l~~~d~--dg--~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~------~~~~~~Iyv~dl~tg~~~~lt~~~g~- 234 (419)
T PRK04043 169 SNIVLADY--TL--TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSY------GERKPTLYKYNLYTGKKEKIASSQGM- 234 (419)
T ss_pred ceEEEECC--CC--CceeEEcc--CC-CeEeEEECCCCCcEEEEEEc------cCCCCEEEEEECCCCcEEEEecCCCc-
Confidence 37899887 55 45666653 23 5778999999997 666553 22467999999999999999875543
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 235 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~dl 264 (419)
T PRK04043 235 ----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLYDT 264 (419)
T ss_pred ----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEEEC
Confidence 3468899999999987210 0 3467999999
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
+|+.++|+.. +....+.|||||++|+|++++.. ..+||++|+++++.++++...
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g-------------- 320 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG-------------- 320 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC--------------
Confidence 8888999876 55678999999999999996532 238999999998888877521
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
.....|||||+.|+|.....+... . .....|+++++ ++++.++|+... ....++|||||+.|+|.....+
T Consensus 321 -~~~~~~SPDG~~Ia~~~~~~~~~~---~-~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~- 390 (419)
T PRK04043 321 -KNNSSVSTYKNYIVYSSRETNNEF---G-KNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGN- 390 (419)
T ss_pred -CcCceECCCCCEEEEEEcCCCccc---C-CCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCC-
Confidence 123479999999999843221100 0 02358999996 778888898753 4457999999999999987644
Q ss_pred ceEEEEEcCCCC
Q 002194 480 RTRTWVISPGSK 491 (954)
Q Consensus 480 ~~~l~~~d~~~~ 491 (954)
...|+.+++++.
T Consensus 391 ~~~L~~~~l~g~ 402 (419)
T PRK04043 391 QSALGIIRLNYN 402 (419)
T ss_pred cEEEEEEecCCC
Confidence 478999999884
No 13
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.90 E-value=3.2e-21 Score=198.92 Aligned_cols=387 Identities=18% Similarity=0.188 Sum_probs=239.5
Q ss_pred eecCC--CCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 115 SFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 115 ~~SPD--G~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
-+-|| |.+|.|+..+ +||.+++.. ++.++||. +-+-+.
T Consensus 43 ~l~PDI~GD~IiFt~~D----------------------------------dlWe~slk~----g~~~ritS--~lGVvn 82 (668)
T COG4946 43 YLNPDIYGDRIIFTCCD----------------------------------DLWEYSLKD----GKPLRITS--GLGVVN 82 (668)
T ss_pred hcCCcccCcEEEEEech----------------------------------HHHHhhhcc----CCeeEEec--ccceec
Confidence 34566 8999999985 899999865 67778874 224789
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecC-CCCCC--
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL-LRGDP-- 269 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~-~~~~~-- 269 (954)
.|.+||||++|||++-- ....-...+||+++.++|+++++|..+.. + -.-..|+|||++|+++--. .-.+.
T Consensus 83 n~kf~pdGrkvaf~rv~--~~ss~~taDly~v~~e~Ge~kRiTyfGr~-f---T~VaG~~~dg~iiV~TD~~tPF~q~~~ 156 (668)
T COG4946 83 NPKFSPDGRKVAFSRVM--LGSSLQTADLYVVPSEDGEAKRITYFGRR-F---TRVAGWIPDGEIIVSTDFHTPFSQWTE 156 (668)
T ss_pred cccCCCCCcEEEEEEEE--ecCCCccccEEEEeCCCCcEEEEEEeccc-c---ceeeccCCCCCEEEEeccCCCccccee
Confidence 99999999999995521 12344578999999999999999988532 1 2245699999999987100 00000
Q ss_pred --------CCCCCCCCCCceeecc-CCceeeechhhhhccCcc-------------cc----------------------
Q 002194 270 --------PKKPLVPLGPKMQSNE-KRDIIQVRTFQDLLKDEY-------------DE---------------------- 305 (954)
Q Consensus 270 --------~~~~~~~~~~~~~~~~-~~~~~~~r~~~d~l~~~~-------------d~---------------------- 305 (954)
.....++.|+...--. .++.+..|.+.|+-..+. |+
T Consensus 157 lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~ 236 (668)
T COG4946 157 LYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGE 236 (668)
T ss_pred eeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcc
Confidence 1112233343321111 112223333333221110 00
Q ss_pred ---ccccccccceEEEEEeCC-ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe
Q 002194 306 ---DLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL 381 (954)
Q Consensus 306 ---~~~~~~~~~~l~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l 381 (954)
-..++.+.++||.+|++| ..++-|+...+..-..+.|||+|+|+. .++||++|.++..++.|
T Consensus 237 RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~--------------~GdIylydP~td~lekl 302 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN--------------AGDIYLYDPETDSLEKL 302 (668)
T ss_pred eEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec--------------CCcEEEeCCCcCcceee
Confidence 011222567889999955 567777664444455788999999997 33899999998777666
Q ss_pred ccC-CCc--ccCCcccc-----c---cccCccceeeccCCCCceEEEEec--------------------cCCCcccccc
Q 002194 382 CDL-PLA--EDIPIAFN-----S---VRKGMRSINWRSDKPSTLYWAETQ--------------------DGGDAKVEVT 430 (954)
Q Consensus 382 ~~~-~~~--~~~p~~~~-----~---~~~g~~~~~wspDg~~i~~~~~~~--------------------~~~~~~~~~~ 430 (954)
... |.. ...+...+ . +..| .-+++-.-|+. |..... ++........
T Consensus 303 dI~lpl~rk~k~~k~~~pskyledfa~~~G-d~ia~VSRGka--Fi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~ 379 (668)
T COG4946 303 DIGLPLDRKKKQPKFVNPSKYLEDFAVVNG-DYIALVSRGKA--FIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN 379 (668)
T ss_pred ecCCccccccccccccCHHHhhhhhccCCC-cEEEEEecCcE--EEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc
Confidence 543 332 11121111 0 0000 11222222221 111100 1110001112
Q ss_pred CCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 431 ~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
..+.|-+++. +|++.+++...-+.+..+..||||+.++.+. .+.+||++|+++| +++.+ +.+...+...
T Consensus 380 dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----dr~el~vididng--nv~~i-dkS~~~lItd- 448 (668)
T COG4946 380 DGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----DRFELWVIDIDNG--NVRLI-DKSEYGLITD- 448 (668)
T ss_pred CCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----CceEEEEEEecCC--CeeEe-cccccceeEE-
Confidence 2346778885 7888888888888899999999999988873 2378999999996 44444 3333333322
Q ss_pred CCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCcccc
Q 002194 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (954)
..|+|+++|++|.... +++ ..+|.++|+++++...+|...+.+| .|+
T Consensus 449 ----f~~~~nsr~iAYafP~-----gy~------------tq~Iklydm~~~Kiy~vTT~ta~Df------------sPa 495 (668)
T COG4946 449 ----FDWHPNSRWIAYAFPE-----GYY------------TQSIKLYDMDGGKIYDVTTPTAYDF------------SPA 495 (668)
T ss_pred ----EEEcCCceeEEEecCc-----cee------------eeeEEEEecCCCeEEEecCCccccc------------Ccc
Confidence 7899999999999731 111 3469999999999999998775422 378
Q ss_pred ccccCCEEEEEEecCCCC
Q 002194 591 LYLNQLKILTSKESKTEN 608 (954)
Q Consensus 591 ~s~dg~~l~~~~~s~~~p 608 (954)
|+|||++|+|.....-.|
T Consensus 496 FD~d~ryLYfLs~RsLdP 513 (668)
T COG4946 496 FDPDGRYLYFLSARSLDP 513 (668)
T ss_pred cCCCCcEEEEEeccccCC
Confidence 999999998876655444
No 14
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.89 E-value=1e-21 Score=211.80 Aligned_cols=315 Identities=19% Similarity=0.216 Sum_probs=234.8
Q ss_pred eEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeEeecCCCCCC
Q 002194 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYP 632 (954)
Q Consensus 553 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~Lt~~~~~~~ 632 (954)
.|.++++++-+.+.|.-.... ...+ .+-+.+|..+++...+.++|+.+|+.+..+++.+++...+.. .
T Consensus 320 ~l~v~~~~g~~~~~v~l~~~g-----a~~~------~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~-F 387 (648)
T COG1505 320 RLEVYDLKGERIEEVELPPPG-----ALGM------GSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQ-F 387 (648)
T ss_pred eEEEeccCceEeeecccCCcc-----ceee------ccCCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCC-c
Confidence 477777776555555443321 1111 123457789999999999999999999888887777654322 2
Q ss_pred CcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC
Q 002194 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (954)
Q Consensus 633 ~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (954)
+-+.+.++.+...|.||++|+.+++. ++.+.. +.|++|+.|||... .-.| .|. .....|+++|
T Consensus 388 Da~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~pTll~aYGGF~v--------sltP-~fs----~~~~~WLerG 450 (648)
T COG1505 388 DADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENPTLLYAYGGFNI--------SLTP-RFS----GSRKLWLERG 450 (648)
T ss_pred CccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCceEEEecccccc--------ccCC-ccc----hhhHHHHhcC
Confidence 34557789999999999999999998 664332 58999999998532 2222 222 2337899999
Q ss_pred cEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
.+.+..+-+|...+|..+..... -...++|+.++++.|+++++..|+++++.|.|-||.++..++.++|+.|.|+|+
T Consensus 451 g~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~ 530 (648)
T COG1505 451 GVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVC 530 (648)
T ss_pred CeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceee
Confidence 88888777777777776553222 245689999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCC-----CCccccch--hhhcHHHHHhcCcccccCCC-C-CCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 790 RSGAYNRTLTPF-----GFQNEDRT--LWEATSTYVEMSPFMSANKL-K-KPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 790 ~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~sp~~~~~~~-~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
..|+.|+..+.. .+..+.+. ..++...+.++||+++++.- + .|+||-.+++|.+|+ +.|+++|+.+|+.
T Consensus 531 evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e 608 (648)
T COG1505 531 EVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQE 608 (648)
T ss_pred ccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHh
Confidence 999998654321 11112111 12334567789999998763 3 589999999999999 9999999999999
Q ss_pred CCCcEEEEEeCCCCCcCCCcccH-HHHHHHHHHHHHHhc
Q 002194 861 HGALCRLVILPFESHGYAARESI-MHVLWETDRWLQKYC 898 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~fl~~~l 898 (954)
.+.++-+.+--++||+-...... ......++.||.+.|
T Consensus 609 ~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 609 VGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred cCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 99888887777889987544332 344556788888876
No 15
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.9e-21 Score=220.57 Aligned_cols=227 Identities=18% Similarity=0.176 Sum_probs=168.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
+||+++. +| ...++++. ....+..|+|||||++|+|++. .++..+||++|+++|+.++++..+..
T Consensus 177 ~L~~~D~--dG--~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~I~~~dl~~g~~~~l~~~~g~--- 241 (427)
T PRK02889 177 QLQISDA--DG--QNAQSALS--SPEPIISPAWSPDGTKLAYVSF------ESKKPVVYVHDLATGRRRVVANFKGS--- 241 (427)
T ss_pred EEEEECC--CC--CCceEecc--CCCCcccceEcCCCCEEEEEEc------cCCCcEEEEEECCCCCEEEeecCCCC---
Confidence 7899887 44 44566653 2346889999999999999874 34567899999999998888765542
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
...+.|||||+.|+++... + +..+||.+++ +
T Consensus 242 --~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~~ 273 (427)
T PRK02889 242 --NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNADG 273 (427)
T ss_pred --ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECCC
Confidence 4579999999999886210 0 3457999999 7
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
+..++++.. +....+.|||||++|+|++++.. ..++|+++++++..++++.... ..
T Consensus 274 ~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~-------------~~ 330 (427)
T PRK02889 274 SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGS-------------YN 330 (427)
T ss_pred CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCC-------------Cc
Confidence 788888876 55678999999999999885432 1278888888777777764211 12
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccce
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
..++|||||+.|+|.... .....|+++++ .+++.++++... ....+.|+|||+.|+|..+.++ ..
T Consensus 331 ~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g-~~ 395 (427)
T PRK02889 331 TSPRISPDGKLLAYISRV----------GGAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG-RS 395 (427)
T ss_pred CceEECCCCCEEEEEEcc----------CCcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEecCC-CE
Confidence 357899999999987321 11237999996 667777776543 3478999999999999988765 47
Q ss_pred EEEEEcCCCC
Q 002194 482 RTWVISPGSK 491 (954)
Q Consensus 482 ~l~~~d~~~~ 491 (954)
.|+.+++++.
T Consensus 396 ~l~~~~~~g~ 405 (427)
T PRK02889 396 VLAAVSSDGR 405 (427)
T ss_pred EEEEEECCCC
Confidence 8999999763
No 16
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=3.1e-21 Score=219.21 Aligned_cols=228 Identities=18% Similarity=0.137 Sum_probs=170.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++++. +| ...+.|+.. ...+..|.|||||++|+|++. .++..+||++|+++|+.++++..+..
T Consensus 198 ~~l~i~d~--dG--~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~------~~g~~~L~~~dl~tg~~~~lt~~~g~-- 263 (448)
T PRK04792 198 YQLMIADY--DG--YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSF------ENRKAEIFVQDIYTQVREKVTSFPGI-- 263 (448)
T ss_pred eEEEEEeC--CC--CCceEeecC--CCcccCceECCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEecCCCCC--
Confidence 37888887 44 455667542 346889999999999999874 34578999999999998888765542
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 264 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl~ 294 (448)
T PRK04792 264 ---NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDIA 294 (448)
T ss_pred ---cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEECC
Confidence 3478999999999987210 0 3457999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. .....++|||||++|+|++.... ..++|++++++++.++++.... .
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~-------------~ 351 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGE-------------Q 351 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCC-------------C
Confidence 8888888876 56678999999999999985432 2389999999888887764211 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...++|||||+.|+|.... .....|+++++ ++++.+.++... ....++|+|||+.|+|....++ .
T Consensus 352 ~~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g-~ 416 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRT----------NGKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQG-K 416 (448)
T ss_pred CcCeeECCCCCEEEEEEec----------CCceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecCC-c
Confidence 1246899999998886221 12347889986 667777776543 3457899999999999987665 3
Q ss_pred eEEEEEcCCCC
Q 002194 481 TRTWVISPGSK 491 (954)
Q Consensus 481 ~~l~~~d~~~~ 491 (954)
..||.++.++.
T Consensus 417 ~~l~~~~~~G~ 427 (448)
T PRK04792 417 QVLAAVSIDGR 427 (448)
T ss_pred eEEEEEECCCC
Confidence 67999998764
No 17
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=6.9e-21 Score=215.61 Aligned_cols=252 Identities=17% Similarity=0.176 Sum_probs=185.8
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
++|||+.... ++....+||++|.+|+..+++|..... +..++|||||+.|+|+....
T Consensus 164 ~riayv~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~~--------------- 220 (429)
T PRK03629 164 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES--------------- 220 (429)
T ss_pred CeEEEEEeeC---CCCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEecC---------------
Confidence 7899987632 123467999999999998999876543 56899999999999872100
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
+..+||++++ +|+.+.++.. +....+.|||||++|+|......
T Consensus 221 -------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---- 265 (429)
T PRK03629 221 -------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---- 265 (429)
T ss_pred -------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----
Confidence 2356999999 8888888765 55678999999999999864321
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+||+||+++++.++++.... ....+.|||||+.|+|..+. .+..+||++
T Consensus 266 ------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~I~f~s~~----------~g~~~Iy~~ 316 (429)
T PRK03629 266 ------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAYTSDQ----------AGRPQVYKV 316 (429)
T ss_pred ------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCEEEEEeCC----------CCCceEEEE
Confidence 1279999999888888876431 22468899999999998322 123479999
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
++ ++++.++++........+.|||||++|+|....++ ...||+++++++ +.+.++... .+ . . ++||
T Consensus 317 d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g-~~~I~~~dl~~g--~~~~Lt~~~-~~-~----~--p~~S 382 (429)
T PRK03629 317 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLTDTF-LD-E----T--PSIA 382 (429)
T ss_pred EC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCC-CceEEEEECCCC--CeEEeCCCC-CC-C----C--ceEC
Confidence 86 67777888765555667999999999999876554 367999999886 456665421 11 1 1 6799
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
|||++|+|.... +....|++++++++..++|...+
T Consensus 383 pDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~~~~ 417 (429)
T PRK03629 383 PNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATD 417 (429)
T ss_pred CCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECccCC
Confidence 999999998732 12345999999888888887544
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=3e-21 Score=219.76 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=173.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
.+||++|. +| ...++|+.. +..+..|+|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~--~g--~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~------~~~~~~l~~~dl~~g~~~~l~~~~g~-- 249 (433)
T PRK04922 184 YALQVADS--DG--YNPQTILRS--AEPILSPAWSPDGKKLAYVSF------ERGRSAIYVQDLATGQRELVASFRGI-- 249 (433)
T ss_pred EEEEEECC--CC--CCceEeecC--CCccccccCCCCCCEEEEEec------CCCCcEEEEEECCCCCEEEeccCCCC--
Confidence 47999987 34 556777642 346889999999999999864 33578999999999998888765542
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|||||+.|+++... + +..+||++++
T Consensus 250 ---~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~~ 280 (433)
T PRK04922 250 ---NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDLG 280 (433)
T ss_pred ---ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEECC
Confidence 3478999999999887210 0 3356999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+|+.++++.. .....++|||||++|+|.++... ..++|++++++++.++++.... .
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~-------------~ 337 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN-------------Y 337 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC-------------C
Confidence 8888888876 55578999999999999985432 1279999998887777764211 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...++|||||+.|+|... + +....|+++++ .+++.+.++... ....+.|||||+.|+|.++..+ .
T Consensus 338 ~~~~~~SpDG~~Ia~~~~--~--------~~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~g-~ 402 (433)
T PRK04922 338 NARASVSPDGKKIAMVHG--S--------GGQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREGG-R 402 (433)
T ss_pred ccCEEECCCCCEEEEEEC--C--------CCceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecCC-c
Confidence 235789999999988722 1 12347899996 667777887554 3567899999999999987654 4
Q ss_pred eEEEEEcCCCCCCCcEEEe
Q 002194 481 TRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 481 ~~l~~~d~~~~~~~~~~l~ 499 (954)
..||.++++++ ....++
T Consensus 403 ~~L~~~~~~g~--~~~~l~ 419 (433)
T PRK04922 403 GVLAAVSTDGR--VRQRLV 419 (433)
T ss_pred eEEEEEECCCC--ceEEcc
Confidence 78999999874 334444
No 19
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.9e-21 Score=218.40 Aligned_cols=255 Identities=14% Similarity=0.148 Sum_probs=186.3
Q ss_pred CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002194 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (954)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (954)
+.+|+|++... .......+||++|.+|+..+++|..... +..+.|||||+.|+|+...
T Consensus 165 ~~~iafv~~~~--~~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~--------------- 222 (435)
T PRK05137 165 DTRIVYVAESG--PKNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYA--------------- 222 (435)
T ss_pred CCeEEEEEeeC--CCCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEec---------------
Confidence 46899987532 0111267999999999999999876553 6689999999999987210
Q ss_pred ceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
. +..+||++++ +|+.++++.. +....+.|||||+.|+|+.....
T Consensus 223 -----------------------~--------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 268 (435)
T PRK05137 223 -----------------------N--------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG--- 268 (435)
T ss_pred -----------------------C--------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---
Confidence 0 2357999999 8888888765 66678999999999999874432
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
..+||++|++++..++++..+.. ...+.|||||+.|+|..+. .+..+||+
T Consensus 269 -------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~i~f~s~~----------~g~~~Iy~ 318 (435)
T PRK05137 269 -------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQIVFESDR----------SGSPQLYV 318 (435)
T ss_pred -------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCEEEEEECC----------CCCCeEEE
Confidence 23799999999888888765421 2457899999999987322 22347999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeee
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (954)
+++ ++++.++++........+.|||||+.|+|.....+ ..+|++++++++ ..+.++... .... ++|
T Consensus 319 ~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~--~~~~lt~~~--~~~~------p~~ 384 (435)
T PRK05137 319 MNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGS--GERILTSGF--LVEG------PTW 384 (435)
T ss_pred EEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCC--ceEeccCCC--CCCC------CeE
Confidence 996 77788888876666777999999999999875443 368999998774 334454321 1111 679
Q ss_pred ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
||||++|+|.....+ .. ....||++|++++..+++..
T Consensus 385 spDG~~i~~~~~~~~--------------~~-~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 385 APNGRVIMFFRQTPG--------------SG-GAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CCCCCEEEEEEccCC--------------CC-CcceEEEEECCCCceEEccC
Confidence 999999999873210 00 02469999999988887763
No 20
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1e-20 Score=216.36 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=169.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
.|++++. +| +..++++. .+..+..|+|||||++|+|++. .++..+||++++++|+.++++...+.
T Consensus 180 ~l~~~d~--~g--~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~------~~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 180 TLQRSDY--DG--ARAVTLLQ--SREPILSPRWSPDGKRIAYVSF------EQKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEEECC--CC--CCceEEec--CCCceeeeeECCCCCEEEEEEc------CCCCCEEEEEECCCCCEEEccCCCCC---
Confidence 6888877 44 55666754 3346789999999999999874 33567999999999999988765542
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
...+.|||||+.|+|+... + +..+||++|+ +
T Consensus 245 --~~~~~~SpDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSK---------------------------------------D-------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECCC
Confidence 4479999999999987210 0 2356999999 8
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~ 401 (954)
|+.++++.. .....+.|||||++|+|.+...+ ..+|+++++++++.++++.... ..
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~-------------~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGN-------------YN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC-------------Cc
Confidence 888888876 56678999999999999985432 2379999998887777764211 11
Q ss_pred cceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccce
Q 002194 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
..+.|||||+.|+|.... .....|+++++ .+++.+.++... ....+.|||||+.|+|.++..+ ..
T Consensus 334 ~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g-~~ 398 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQ----------DGNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQG-RG 398 (430)
T ss_pred cceEECCCCCEEEEEEcc----------CCceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecCC-ce
Confidence 357899999998887321 11336899996 667778887643 3457899999999999987665 47
Q ss_pred EEEEEcCCCC
Q 002194 482 RTWVISPGSK 491 (954)
Q Consensus 482 ~l~~~d~~~~ 491 (954)
.||.++++++
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999874
No 21
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=3.1e-20 Score=207.41 Aligned_cols=250 Identities=15% Similarity=0.116 Sum_probs=181.7
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE-EEEEecCCCCCCCCCCCCCCCC
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL-LVCTIPLLRGDPPKKPLVPLGP 279 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~-l~~~~~~~~~~~~~~~~~~~~~ 279 (954)
.+|+|..... +....+||++|.+|...++++... . ...+.|||||+. ++|+..
T Consensus 155 ~r~~~v~~~~----~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~---------------- 208 (419)
T PRK04043 155 KRKVVFSKYT----GPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSY---------------- 208 (419)
T ss_pred eeEEEEEEcc----CCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEc----------------
Confidence 4666665311 224789999999999888887654 2 458999999985 776511
Q ss_pred ceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
+ . +..+||++|+ +|+.++++.. +....+.|||||++|+|.....+
T Consensus 209 -----~-----------------~--------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g--- 255 (419)
T PRK04043 209 -----G-----------------E--------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG--- 255 (419)
T ss_pred -----c-----------------C--------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC---
Confidence 1 0 1346999999 8999999866 55667899999999999875432
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
..+||++++++++.++|+..+... ..+.|||||++|+|..+. .+..+||+
T Consensus 256 -------~~~Iy~~dl~~g~~~~LT~~~~~d-------------~~p~~SPDG~~I~F~Sdr----------~g~~~Iy~ 305 (419)
T PRK04043 256 -------QPDIYLYDTNTKTLTQITNYPGID-------------VNGNFVEDDKRIVFVSDR----------LGYPNIFM 305 (419)
T ss_pred -------CcEEEEEECCCCcEEEcccCCCcc-------------CccEECCCCCEEEEEECC----------CCCceEEE
Confidence 248999999999889998755321 246799999999998543 22458999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc-----cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCC
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT-----RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGS 512 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~-----~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 512 (954)
+++ ++++.++++.... ....|||||+.|+|...... ...+||+++++++ +.+.++.... + .
T Consensus 306 ~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~-~-----~- 371 (419)
T PRK04043 306 KKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGV-N-----Q- 371 (419)
T ss_pred EEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCC-c-----C-
Confidence 996 7788877765322 23699999999999986532 2268999999886 5677766421 1 1
Q ss_pred CCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 513 PMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 513 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
.++|||||+.|+|.... +....|+.+++++...+++....+
T Consensus 372 -~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 372 -FPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -CeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeecCCC
Confidence 16799999999998731 233469999999888887866443
No 22
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=7.7e-20 Score=207.83 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=182.2
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
.+|+|+.... ......+||++|.+|...+.++..... +..+.|||||+.|+|+...
T Consensus 183 ~riayv~~~~---~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~---------------- 238 (448)
T PRK04792 183 TRIAYVVVND---KDKYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFE---------------- 238 (448)
T ss_pred CEEEEEEeeC---CCCCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEec----------------
Confidence 5788887532 122257999999999888888877653 5689999999999987210
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
+ +..+||++|+ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 239 -----------------------~-------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---- 284 (448)
T PRK04792 239 -----------------------N-------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---- 284 (448)
T ss_pred -----------------------C-------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----
Confidence 0 3357999999 8888888765 55568999999999999864432
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+||++|+++++.++++.... ....++|||||+.|+|..+. ....+||++
T Consensus 285 ------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~I~f~s~~----------~g~~~Iy~~ 335 (448)
T PRK04792 285 ------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKSLIFTSER----------GGKPQIYRV 335 (448)
T ss_pred ------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCEEEEEECC----------CCCceEEEE
Confidence 2379999999888888876431 12457899999999887321 224589999
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
++ ++++.++++........++|||||+.|+|.....+ ..+||.++++++ +...++.... + .. ++|+
T Consensus 336 dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g-~~~I~~~dl~~g--~~~~lt~~~~-d-----~~--ps~s 401 (448)
T PRK04792 336 NL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG-KFNIARQDLETG--AMQVLTSTRL-D-----ES--PSVA 401 (448)
T ss_pred EC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC-ceEEEEEECCCC--CeEEccCCCC-C-----CC--ceEC
Confidence 96 67777777644333456899999999999876544 368999999886 4455554321 1 11 5799
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
|||++|+|.... +....||+++.+++..+++....
T Consensus 402 pdG~~I~~~~~~------------------~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 402 PNGTMVIYSTTY------------------QGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred CCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCCC
Confidence 999999998731 12345999999888777776544
No 23
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=6.6e-20 Score=208.79 Aligned_cols=254 Identities=16% Similarity=0.143 Sum_probs=184.0
Q ss_pred CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002194 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (954)
Q Consensus 200 G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~ 279 (954)
+.+|+|+.... ..+....+||++|.+++..++++..... +..+.|||||+.|+|+...
T Consensus 167 ~~~ia~v~~~~--~~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~--------------- 224 (433)
T PRK04922 167 WTRIAYVTVSG--AGGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFE--------------- 224 (433)
T ss_pred cceEEEEEEeC--CCCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecC---------------
Confidence 35799987532 1223467899999999888999876543 5689999999999987210
Q ss_pred ceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCccc
Q 002194 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (954)
Q Consensus 280 ~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~ 357 (954)
. +..+||++++ +|+.++++.. +....+.|||||++|+|.....+
T Consensus 225 -----------------------~--------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--- 270 (433)
T PRK04922 225 -----------------------R--------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--- 270 (433)
T ss_pred -----------------------C--------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---
Confidence 0 2356999999 7888888765 55568999999999999864432
Q ss_pred ccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEE
Q 002194 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (954)
Q Consensus 358 ~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (954)
..+|+++++++++.++++..... ...++|||||+.|+|..+. .+...||+
T Consensus 271 -------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~l~f~sd~----------~g~~~iy~ 320 (433)
T PRK04922 271 -------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKSIYFTSDR----------GGRPQIYR 320 (433)
T ss_pred -------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCEEEEEECC----------CCCceEEE
Confidence 23799999998888887764311 2357899999999987322 12347999
Q ss_pred EecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeee
Q 002194 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (954)
Q Consensus 438 ~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 517 (954)
+++ ++++.++++........++|||||++|+|....++ ..+|++++++++ +.+.++.... + .. +.|
T Consensus 321 ~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-~~~I~v~d~~~g--~~~~Lt~~~~-~-~~------p~~ 386 (433)
T PRK04922 321 VAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-QYRIAVMDLSTG--SVRTLTPGSL-D-ES------PSF 386 (433)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-ceeEEEEECCCC--CeEECCCCCC-C-CC------ceE
Confidence 986 66777777654444557999999999999865433 358999999875 4556654321 1 11 679
Q ss_pred ccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 518 spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
+|||++|+|.... +....||.++++++..++++...
T Consensus 387 spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~~~ 422 (433)
T PRK04922 387 APNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVSAD 422 (433)
T ss_pred CCCCCEEEEEEec------------------CCceEEEEEECCCCceEEcccCC
Confidence 9999999998732 12456999999988888887654
No 24
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=9e-20 Score=206.89 Aligned_cols=250 Identities=16% Similarity=0.163 Sum_probs=179.5
Q ss_pred CeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002194 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (954)
Q Consensus 201 ~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (954)
.+|+|+.. ..+..+||++|.+|...++++..... +..++|||||+.|+|+...
T Consensus 164 ~~iayv~~------~~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~---------------- 216 (427)
T PRK02889 164 TRIAYVIK------TGNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFE---------------- 216 (427)
T ss_pred cEEEEEEc------cCCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEcc----------------
Confidence 57999863 23467999999998888888765553 6689999999999987210
Q ss_pred eeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccc
Q 002194 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (954)
Q Consensus 281 ~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~ 358 (954)
+ +..+||++|+ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 217 -----------------------~-------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---- 262 (427)
T PRK02889 217 -----------------------S-------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG---- 262 (427)
T ss_pred -----------------------C-------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----
Confidence 0 2346999999 8888888754 66678999999999999764432
Q ss_pred cccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEE
Q 002194 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (954)
Q Consensus 359 ~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (954)
..+||+++++++..++++.... ....+.|||||+.|+|..+. .+...||.+
T Consensus 263 ------~~~Iy~~d~~~~~~~~lt~~~~-------------~~~~~~wSpDG~~l~f~s~~----------~g~~~Iy~~ 313 (427)
T PRK02889 263 ------NSQIYTVNADGSGLRRLTQSSG-------------IDTEPFFSPDGRSIYFTSDR----------GGAPQIYRM 313 (427)
T ss_pred ------CceEEEEECCCCCcEECCCCCC-------------CCcCeEEcCCCCEEEEEecC----------CCCcEEEEE
Confidence 2378889988887777766431 12357899999999886321 123478888
Q ss_pred ecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeec
Q 002194 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (954)
Q Consensus 439 ~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s 518 (954)
++ ++++.++++........++|||||++|+|.+..++ ..+|++++++++ +.+.++..... . .++|+
T Consensus 314 ~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-~~~I~v~d~~~g--~~~~lt~~~~~--~------~p~~s 379 (427)
T PRK02889 314 PA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG-AFKLYVQDLATG--QVTALTDTTRD--E------SPSFA 379 (427)
T ss_pred EC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-cEEEEEEECCCC--CeEEccCCCCc--c------CceEC
Confidence 85 66677777644434456899999999999876554 357999999885 44555543211 1 16899
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
|||+.|+|.... +....|+.++++++..+++....+
T Consensus 380 pdg~~l~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 380 PNGRYILYATQQ------------------GGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred CCCCEEEEEEec------------------CCCEEEEEEECCCCceEEeecCCC
Confidence 999999998732 123469999997766667765443
No 25
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=5.8e-20 Score=208.77 Aligned_cols=221 Identities=17% Similarity=0.177 Sum_probs=159.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..||+++. +| ...+.|+. ....+..|.|||||++|+|++. +++..+||++|+++|+.++++.....
T Consensus 184 ~~i~i~d~--dg--~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADY--DG--FNQFIVNR--SSQPLMSPAWSPDGSKLAYVSF------ENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECC--CC--CCceEecc--CCCccccceEcCCCCEEEEEEe------cCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 48999997 44 44556654 2236899999999999999874 33567899999999988878755442
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...++|||||+.|+++... + +..+||.+++
T Consensus 250 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~~ 280 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGAN 280 (429)
T ss_pred ---cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEECC
Confidence 3478999999999987210 0 3346999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
++..++++.. .....+.|||||++|+|.++... ..+||.++..++..+.+.. . +
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~-~--------------~ 335 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG-R--------------G 335 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC-C--------------C
Confidence 7888888876 66788999999999999985432 1267777777666555421 1 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
..+.|||||+.|++. . .+.++++++ .+++.+.++.. .....++|||||+.|+|++.+++ .
T Consensus 336 -~~~~~SpDG~~ia~~-------------~-~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~ 395 (429)
T PRK01742 336 -YSAQISADGKTLVMI-------------N-GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-G 395 (429)
T ss_pred -CCccCCCCCCEEEEE-------------c-CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-c
Confidence 246799999998886 1 135777886 56666666543 34577999999999999987654 2
Q ss_pred eEEEEEcCCCC
Q 002194 481 TRTWVISPGSK 491 (954)
Q Consensus 481 ~~l~~~d~~~~ 491 (954)
..++.++.++.
T Consensus 396 ~~l~~~~~~G~ 406 (429)
T PRK01742 396 KVLQLVSADGR 406 (429)
T ss_pred eEEEEEECCCC
Confidence 44666676663
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.7e-22 Score=200.30 Aligned_cols=327 Identities=17% Similarity=0.195 Sum_probs=226.8
Q ss_pred cccccccCCCCCCCchhhhcccCCCCCcccccccceecccccccccccccccccccCCCCCCCccccccccccccccccc
Q 002194 13 HRGVSLLTPSSLSPPIFLCLKLGRVPGHLRTHSIKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92 (954)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (954)
.|..+|.+|+.++||. .++|+.||+||+.+|.--+...|.+|+...+ .+...|+.|..
T Consensus 152 ~R~~ll~elskyi~p~---------------------illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~ 209 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPN---------------------ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGR 209 (519)
T ss_pred hHHHHHHHHHhhCCHh---------------------hcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCc
Confidence 3888999999999999 8899999999999999999999998886654 57788998887
Q ss_pred CCcCCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC
Q 002194 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (954)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 172 (954)
.+.+....++..-+.. +++.++||++|++||..+.+ ....+|.+..
T Consensus 210 ~qip~qt~qil~~htd-EVWfl~FS~nGkyLAsaSkD---------------------------------~Taiiw~v~~ 255 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTD-EVWFLQFSHNGKYLASASKD---------------------------------STAIIWIVVY 255 (519)
T ss_pred ccCCchhhhhHhhCCC-cEEEEEEcCCCeeEeeccCC---------------------------------ceEEEEEEec
Confidence 6666665555555544 89999999999999999886 3445666655
Q ss_pred CCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe
Q 002194 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 173 ~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (954)
|+...-.+.+-++. ..+....||||.++|+-+.. ...++++|+++|+.+.......+. .+.+++|-
T Consensus 256 d~~~kl~~tlvgh~--~~V~yi~wSPDdryLlaCg~---------~e~~~lwDv~tgd~~~~y~~~~~~---S~~sc~W~ 321 (519)
T KOG0293|consen 256 DVHFKLKKTLVGHS--QPVSYIMWSPDDRYLLACGF---------DEVLSLWDVDTGDLRHLYPSGLGF---SVSSCAWC 321 (519)
T ss_pred Ccceeeeeeeeccc--CceEEEEECCCCCeEEecCc---------hHheeeccCCcchhhhhcccCcCC---CcceeEEc
Confidence 55322233333322 36899999999999998753 334999999999988776555211 25699999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-
Q 002194 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP- 331 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~- 331 (954)
|||..++..++ ..+++.++++|...---.+
T Consensus 322 pDg~~~V~Gs~-------------------------------------------------dr~i~~wdlDgn~~~~W~gv 352 (519)
T KOG0293|consen 322 PDGFRFVTGSP-------------------------------------------------DRTIIMWDLDGNILGNWEGV 352 (519)
T ss_pred cCCceeEecCC-------------------------------------------------CCcEEEecCCcchhhccccc
Confidence 99999886511 1347777887643111111
Q ss_pred --ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 --AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 --~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..+..++.++||++++.+..+ ..+.+++..+...+.+... . ..+.++..|-|
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d-------------~~i~l~~~e~~~dr~lise----~---------~~its~~iS~d 406 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVD-------------KKIRLYNREARVDRGLISE----E---------QPITSFSISKD 406 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecc-------------cceeeechhhhhhhccccc----c---------CceeEEEEcCC
Confidence 346678999999999888733 2788888775543322221 1 23356778888
Q ss_pred CCCceEEEEec------------------------------cCCC--ccccccCCCeEEEEecCCCCCCCceEEeecccc
Q 002194 410 KPSTLYWAETQ------------------------------DGGD--AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR 457 (954)
Q Consensus 410 g~~i~~~~~~~------------------------------~~~~--~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~ 457 (954)
|+.++.-...+ .|++ ....-++.++||+|+. ..|.....|+++...
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSGHSKT 484 (519)
T ss_pred CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc--cCCceeEeecCCcce
Confidence 87554322100 1111 1122345679999996 455556777888888
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
++.++|+|.....+.++.+++. .+||-.+
T Consensus 485 vNcVswNP~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCe-EEEecCC
Confidence 9999999988877666655543 6777544
No 27
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=1.7e-19 Score=206.39 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=183.9
Q ss_pred CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002194 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (954)
Q Consensus 199 DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~ 278 (954)
-.++|+|++... ...++..+||++|.+|+..++++..... +..+.|||||+.|+|+...
T Consensus 161 f~~~ia~v~~~~--~~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~-------------- 219 (430)
T PRK00178 161 FSTRILYVTAER--FSVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFE-------------- 219 (430)
T ss_pred ceeeEEEEEeeC--CCCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcC--------------
Confidence 346799987532 1123466899999999888888766543 5689999999999987210
Q ss_pred CceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcc
Q 002194 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (954)
Q Consensus 279 ~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~ 356 (954)
+ +..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 220 -------------------------~-------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-- 265 (430)
T PRK00178 220 -------------------------Q-------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-- 265 (430)
T ss_pred -------------------------C-------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--
Confidence 0 2346999999 8888888765 55667999999999999874432
Q ss_pred cccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEE
Q 002194 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (954)
Q Consensus 357 ~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (954)
..+||++|+++++.++++..... ...+.|||||+.|+|..+. .+...||
T Consensus 266 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~i~f~s~~----------~g~~~iy 314 (430)
T PRK00178 266 --------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRTLYFTSDR----------GGKPQIY 314 (430)
T ss_pred --------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCEEEEEECC----------CCCceEE
Confidence 23899999999888888764321 2357899999999987322 2234799
Q ss_pred EEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCee
Q 002194 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (954)
Q Consensus 437 ~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 516 (954)
++++ .+++.++++........+.|||||+.|+|....++ ..+||++|++++ +.+.+++... + .. ++
T Consensus 315 ~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~tg--~~~~lt~~~~-~-----~~--p~ 380 (430)
T PRK00178 315 KVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQRG--SVRILTDTSL-D-----ES--PS 380 (430)
T ss_pred EEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEECCCC--CEEEccCCCC-C-----CC--ce
Confidence 9986 66777777644434456899999999999876544 367999999885 4566654321 1 11 57
Q ss_pred eccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 517 ~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
|||||++++|.... +....|++++++++..+++....
T Consensus 381 ~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 381 VAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECcCCC
Confidence 99999999998732 12456999999887776776443
No 28
>PRK10566 esterase; Provisional
Probab=99.83 E-value=4.9e-19 Score=187.11 Aligned_cols=219 Identities=18% Similarity=0.219 Sum_probs=146.4
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
.+..+.|.|.+. .+++.|+||++||.+... .. ....+..|+++||.|+++++ +|+|.+.
T Consensus 11 ~~~~~~~~p~~~---~~~~~p~vv~~HG~~~~~-----------~~----~~~~~~~l~~~G~~v~~~d~---~g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ---RDTPLPTVFFYHGFTSSK-----------LV----YSYFAVALAQAGFRVIMPDA---PMHGARF 69 (249)
T ss_pred CcceEEEcCCCC---CCCCCCEEEEeCCCCccc-----------ch----HHHHHHHHHhCCCEEEEecC---CcccccC
Confidence 355677778641 123589999999963110 01 12457788899999999555 4554431
Q ss_pred cc------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc--CCCC---
Q 002194 731 AN------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG--AYNR--- 796 (954)
Q Consensus 731 ~~------~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~--~~~~--- 796 (954)
.. .. ......+|+.++++++.+++.+|+++|+++|||+||++++.++.++|+ +++++.+.+ .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHH
Confidence 11 11 112446788889999999888999999999999999999999999876 444443322 1110
Q ss_pred -CCCCCCCccc--cchhhhcHHHHHhcCcccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC--cEEEEEe
Q 002194 797 -TLTPFGFQNE--DRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA--LCRLVIL 870 (954)
Q Consensus 797 -~~~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~--~~~~~~~ 870 (954)
...+...... .....+....+..+++...+.++ ++|+|++||++|.+|| +.++++++++++..|. +++++.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 0000000000 00111111223344555566666 6899999999999999 9999999999999886 4789999
Q ss_pred CCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 871 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++++|.+. ...++.+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999974 356789999999875
No 29
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.83 E-value=4.1e-19 Score=177.85 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=169.6
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
...-.+++.+|.++....++|..- ..+..+|+++||.... .. ......+..|+..||.|++
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~~------------~s--~~~~~~a~~l~~~g~~v~a- 87 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGEH------------SS--WRYQSTAKRLAKSGFAVYA- 87 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCccc------------ch--hhHHHHHHHHHhCCCeEEE-
Confidence 344456788999999999999642 2357889999995211 00 1122467789999999999
Q ss_pred CCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 719 PTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|..|+|.+.+...+ +...++|+...++.+..+..-...+.+++||||||.+++.++.++|+.+.++|.++|++-
T Consensus 88 --~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 88 --IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred --eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 777899988764433 567899999999998887655556899999999999999999999999999999998653
Q ss_pred CCC-------------------CCCCCcc-c------cchhhhcHHHHHhcC----------------------cccccC
Q 002194 796 RTL-------------------TPFGFQN-E------DRTLWEATSTYVEMS----------------------PFMSAN 827 (954)
Q Consensus 796 ~~~-------------------~~~~~~~-~------~~~~~~~~~~~~~~s----------------------p~~~~~ 827 (954)
... -.|.... . .+.++. ......+ ...++.
T Consensus 166 i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~--r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 166 ISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEK--RKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHH--HHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 110 0011000 0 011111 1111112 234567
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC---CcccHHHHHHHHHHHHHHh
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~ 897 (954)
++..|+||+||+.|.++. +.-++++|+...... +++.+|||+-|.+. ..++.+.++..|++||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~D--KTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSSD--KTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCCC--CceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 788999999999999988 899999999887765 57778999999986 4567888999999999875
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.83 E-value=1.3e-18 Score=191.98 Aligned_cols=244 Identities=16% Similarity=0.188 Sum_probs=167.1
Q ss_pred CcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC
Q 002194 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (954)
Q Consensus 633 ~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (954)
....++.+...+++.||.+|++..+.|.+. ..+.++||++||.... ..| .....+..|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 344456667778888999999999988641 1246899999996310 001 0123455688899
Q ss_pred cEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
|.|++ +|.+|+|.+.... .......+|+.+++++|......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 6777888875322 23566789999999999876444556899999999999999999999999999999
Q ss_pred eccCCCCCCC---CCC-----------Ccc----ccchhh------hcHHHHHhcCc----------------------c
Q 002194 790 RSGAYNRTLT---PFG-----------FQN----EDRTLW------EATSTYVEMSP----------------------F 823 (954)
Q Consensus 790 ~~~~~~~~~~---~~~-----------~~~----~~~~~~------~~~~~~~~~sp----------------------~ 823 (954)
++|....... .+. ... ...... .....+...+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 000 000 000000 00000111111 1
Q ss_pred cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc---cHHHHHHHHHHHHHHhccc
Q 002194 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE---SIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 824 ~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~fl~~~l~~ 900 (954)
..+.++++|+||+||++|.+|| ++.++++++++... .++++++++++|.+...+ ..+.+.+.+.+||++++..
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 2346788999999999999999 99999999887643 368889999999975321 2356788899999999754
Q ss_pred C
Q 002194 901 N 901 (954)
Q Consensus 901 ~ 901 (954)
.
T Consensus 321 ~ 321 (330)
T PLN02298 321 K 321 (330)
T ss_pred C
Confidence 4
No 31
>PRK13604 luxD acyl transferase; Provisional
Probab=99.82 E-value=4.1e-19 Score=184.47 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=144.5
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+.+.+|.+|.||+..|++.. ..+.++||++||.... ......++..|+++||+|+. +|
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~~---------------~~~~~~~A~~La~~G~~vLr---fD 71 (307)
T PRK13604 13 VICLENGQSIRVWETLPKENS---PKKNNTILIASGFARR---------------MDHFAGLAEYLSSNGFHVIR---YD 71 (307)
T ss_pred eEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCCC---------------hHHHHHHHHHHHHCCCEEEE---ec
Confidence 456789999999999997522 2347899999995210 01134578889999999999 66
Q ss_pred CCCC-CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC-
Q 002194 723 IIGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL- 798 (954)
Q Consensus 723 ~~G~-G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~- 798 (954)
.+|. |.|.+.- ........|+.++++|++++. .++|+|+||||||.+++.+|+.. .++++|+.+|+.+...
T Consensus 72 ~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~ 146 (307)
T PRK13604 72 SLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDT 146 (307)
T ss_pred CCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHH
Confidence 5554 5553321 112345799999999998863 46899999999999987766644 3999999999887220
Q ss_pred ------C-----CCCCccc-----c-----chhhhcH---HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHH
Q 002194 799 ------T-----PFGFQNE-----D-----RTLWEAT---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (954)
Q Consensus 799 ------~-----~~~~~~~-----~-----~~~~~~~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~ 854 (954)
. ++..... . ..+.... ......+|+..+++++.|+|+|||++|..|| +++++++
T Consensus 147 l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~~l 224 (307)
T PRK13604 147 LERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVIDL 224 (307)
T ss_pred HHHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHHHH
Confidence 0 0000000 0 0011110 0011235567788899999999999999999 9999999
Q ss_pred HHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 855 FNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+++++. .+++++++||++|.+.
T Consensus 225 ~e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 225 LDSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHHhcc--CCcEEEEeCCCccccC
Confidence 998764 3579999999999985
No 32
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=9.8e-19 Score=198.75 Aligned_cols=221 Identities=17% Similarity=0.194 Sum_probs=160.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....++|||||++|||++.+ . .. ..||+|++.+ ++.+.++.++ .
T Consensus 205 ~v~~p~wSPDG~~la~~s~~----------------------~--~~------~~i~i~dl~t----g~~~~l~~~~--g 248 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE----------------------N--KK------SQLVVHDLRS----GARKVVASFR--G 248 (429)
T ss_pred ccccceEcCCCCEEEEEEec----------------------C--CC------cEEEEEeCCC----CceEEEecCC--C
Confidence 46789999999999998763 1 01 3799999854 5556665443 2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....++|||||++|+|+.. .++..+||++|+++++.+++|..... ...+.|+|||+.|+|+...
T Consensus 249 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~i~f~s~~----- 312 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASS------KDGVLNIYVMGANGGTPSQLTSGAGN-----NTEPSWSPDGQSILFTSDR----- 312 (429)
T ss_pred ccCceeECCCCCEEEEEEe------cCCcEEEEEEECCCCCeEeeccCCCC-----cCCEEECCCCCEEEEEECC-----
Confidence 3567999999999999763 34567899999999999999865442 5589999999999987210
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
+ +..+||.++. ++..++++... ..+.|||||++|++
T Consensus 313 ----------------------------------~-------g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 313 ----------------------------------S-------GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred ----------------------------------C-------CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEE
Confidence 0 3347999998 55566663323 46889999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
.+.. .+++||+.++..+.++... . ...++|+|||+.|+|... +
T Consensus 350 ~~~~--------------~i~~~Dl~~g~~~~lt~~~-~-------------~~~~~~sPdG~~i~~~s~--~------- 392 (429)
T PRK01742 350 INGD--------------NVVKQDLTSGSTEVLSSTF-L-------------DESPSISPNGIMIIYSST--Q------- 392 (429)
T ss_pred EcCC--------------CEEEEECCCCCeEEecCCC-C-------------CCCceECCCCCEEEEEEc--C-------
Confidence 8731 6788999877766665321 1 135789999999888732 1
Q ss_pred ccCCCeEEEEecCCCCCCCceEEeecccccCceeeccC
Q 002194 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (954)
.....++++++ +|...+.|..+++.+..++|||-
T Consensus 393 -g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 -GLGKVLQLVSA---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCceEEEEEEC---CCCceEEccCCCCCCCCcccCCC
Confidence 12335666664 77777888777777889999984
No 33
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.81 E-value=1.9e-18 Score=184.84 Aligned_cols=233 Identities=19% Similarity=0.170 Sum_probs=154.0
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
.......++|.+.+|..|.|++++|++ +++++|+||.+||.... .........|+.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~----~~~~~Pavv~~hGyg~~----------------~~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKN----AKGKLPAVVQFHGYGGR----------------SGDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-----SSSSEEEEEEE--TT------------------GGGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCC----CCCCcCEEEEecCCCCC----------------CCCcccccccccCCeE
Confidence 345678899999999999999999984 23569999999995311 0111234468999999
Q ss_pred EEEcCCCCCCCCC------------------Ccc-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 715 ILGGPTTPIIGEG------------------DEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 715 V~~~~~~~~~G~G------------------~~~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
|+..+.+|..|.. ... ....++...+.|+..++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 9996655544211 111 123345667899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCC-C----CCC--CCCccccch-------hhh---cHHHHHhcCcccccCCCCCCEEEEEe
Q 002194 776 LLAHAPHLFCCGIARSGAYNR-T----LTP--FGFQNEDRT-------LWE---ATSTYVEMSPFMSANKLKKPILLVHG 838 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~-~----~~~--~~~~~~~~~-------~~~---~~~~~~~~sp~~~~~~~~~P~Lii~G 838 (954)
+++.+ ++++++++..|++.. . ... ..+...... .-. -.+.+..++..+.+.+|++|+|+..|
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~g 270 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVG 270 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEe
Confidence 99999 569999999886431 0 000 000000000 001 12334456777888999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
-.|.+|| +......|+++.. ++++.+||..+|.... ....++.++||.+|
T Consensus 271 l~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 271 LQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp TT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred cCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 9999999 8888888888754 4899999999998741 23357788999875
No 34
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.80 E-value=3.6e-18 Score=182.08 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=151.1
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHH-HHCCcEE
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAI 715 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V 715 (954)
+.+.+++.+. -+.++.+.+|+|+++... +.|+|+++||.+... ..|.. ......+ ++.||.|
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~---~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~V 75 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAAG---PVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLAL 75 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccCC---CCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcEE
Confidence 3455666554 567889999999875432 489999999964211 11110 0112334 4579999
Q ss_pred EEcCCCCCCCCCC-------------ccc----chhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 716 LGGPTTPIIGEGD-------------EEA----NDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 716 ~~~~~~~~~G~G~-------------~~~----~~~~--~~~~~~D~~~av~~-l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
++++.. ..|.|. ++. ...+ .......+.+.+.. +.+...+|+++++++|+||||++|+.
T Consensus 76 v~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~ 154 (275)
T TIGR02821 76 VAPDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALV 154 (275)
T ss_pred EEeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHH
Confidence 997652 122221 100 0000 00112222222333 33334478899999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCC--CCCCEEEEEeCCCCCCCCch-HHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLT-MQSD 852 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--~~~P~Lii~G~~D~~v~~~~-~~~~ 852 (954)
++.++|+.|+++++++|+++.....+.............+.+...+|...+.+ ...|+|++||+.|..++ . .++.
T Consensus 155 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~ 232 (275)
T TIGR02821 155 IALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPD 232 (275)
T ss_pred HHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHH
Confidence 99999999999999999977543222100001111112222334455544433 45799999999999998 7 5788
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.++|+..|+++++.++|+++|.|... ...+.+.++|+.++
T Consensus 233 ~~~~~l~~~g~~v~~~~~~g~~H~f~~~---~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 233 AFEQACRAAGQALTLRRQAGYDHSYYFI---ASFIADHLRHHAER 274 (275)
T ss_pred HHHHHHHHcCCCeEEEEeCCCCccchhH---HHhHHHHHHHHHhh
Confidence 9999999999999999999999998533 45566777887765
No 35
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.80 E-value=4.9e-18 Score=190.03 Aligned_cols=230 Identities=17% Similarity=0.136 Sum_probs=153.9
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
....+.++++..+|..|++++++|+. .++.|+||++||.. +.. ..........|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~~~--~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------SLQ--TDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------cch--hhhHHHHHHHHHhCCCEE
Confidence 34578999998888899999999973 23589988776631 000 001123466788999999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
++ ++..|+|.+.... ..........+++++|.+.+.+|++||+++|+|+||++++.++...|++++++|+++|+++
T Consensus 226 l~---~D~pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LT---IDMPSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EE---ECCCCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99 5556777663321 0011122235788999999889999999999999999999999999889999999998765
Q ss_pred CCCCCCCCccc------------cchhhhcHH----HHHhcCcc--c-ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 796 RTLTPFGFQNE------------DRTLWEATS----TYVEMSPF--M-SANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 796 ~~~~~~~~~~~------------~~~~~~~~~----~~~~~sp~--~-~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
........... ........+ .+..++.. . ...++++|+|++||++|.+|| +++++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 000000111 11111211 1 125688999999999999999 888886655
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
... +.+++++|+. |.+ +....++..+.+||.++|
T Consensus 380 ~~~----~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SSA----DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred hCC----CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 442 3588889986 433 356788999999999876
No 36
>PLN02442 S-formylglutathione hydrolase
Probab=99.79 E-value=5.9e-18 Score=180.58 Aligned_cols=240 Identities=21% Similarity=0.225 Sum_probs=150.6
Q ss_pred CceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
...+.+++.+. -|.+++..+|+|+. .++ .++|+|+++||+.... ..|... ......++..||+|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~--~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~V 80 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPA-SDS--GKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIAL 80 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCc-ccC--CCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeEE
Confidence 34566666653 57789999999984 222 3599999999964211 111100 11234556789999
Q ss_pred EEcCCCCC--C----------CCCCccc----c-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH
Q 002194 716 LGGPTTPI--I----------GEGDEEA----N-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA 774 (954)
Q Consensus 716 ~~~~~~~~--~----------G~G~~~~----~-----~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~ 774 (954)
+.++.... . ++|.+.. . ..+.....+++...++... ..+|+++++|+|+||||++|+
T Consensus 81 v~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~ 158 (283)
T PLN02442 81 VAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGAL 158 (283)
T ss_pred EecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHH
Confidence 99764211 1 1111110 0 0122233444444443332 236889999999999999999
Q ss_pred HHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcC---cccccCCCCCCEEEEEeCCCCCCCCchH-H
Q 002194 775 NLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMS---PFMSANKLKKPILLVHGEEDNNSGTLTM-Q 850 (954)
Q Consensus 775 ~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---p~~~~~~~~~P~Lii~G~~D~~v~~~~~-~ 850 (954)
.++.++|++|+++++++|+++.....+.............+.+.+++ ++.++.+.++|+|++||++|.+|+ .. +
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~ 236 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLL 236 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--cccc
Confidence 99999999999999999988754222211100111111122233444 444555678999999999999987 53 5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++.++++++..|.++++.++|+++|.+. ....++++.+.|..+++
T Consensus 237 s~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 237 PENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999874 22233344445544443
No 37
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.79 E-value=2e-18 Score=177.92 Aligned_cols=201 Identities=22% Similarity=0.239 Sum_probs=142.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC--CCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG--EGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G--~G~~ 729 (954)
+.+++..|++ .++.|.||++|+.. ++.......+..|+++||.|+.++.++..+ ....
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~---------------G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF---------------GLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT---------------BS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC---------------CCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 5789999976 14589999999841 122222346788999999999988876655 1111
Q ss_pred ccc-hh-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC
Q 002194 730 EAN-DR-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (954)
Q Consensus 730 ~~~-~~-------~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~ 801 (954)
... .. .......|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++|+|+..|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~------ 133 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP------ 133 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS------
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC------
Confidence 111 11 1235578889999999999888999999999999999999998887 67999999888100
Q ss_pred CCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
...+.....++++|+|+++|++|..++ .+...++.++|+..++++++++|||++|+|....
T Consensus 134 -----------------~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 -----------------PPPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -----------------GGGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred -----------------CCcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 011223345678999999999999998 8888999999999999999999999999996432
Q ss_pred -------cHHHHHHHHHHHHHHhc
Q 002194 882 -------SIMHVLWETDRWLQKYC 898 (954)
Q Consensus 882 -------~~~~~~~~i~~fl~~~l 898 (954)
..++.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34678889999999876
No 38
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.79 E-value=2.8e-17 Score=187.95 Aligned_cols=228 Identities=19% Similarity=0.220 Sum_probs=165.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..||+++. +| ...++|+.. +..+..|.|||||++|+|+.. .++..+||++++++|+.+.++.....
T Consensus 170 ~~l~~~d~--~g--~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~------~~~~~~i~v~d~~~g~~~~~~~~~~~-- 235 (417)
T TIGR02800 170 YELQVADY--DG--ANPQTITRS--REPILSPAWSPDGQKLAYVSF------ESGKPEIYVQDLATGQREKVASFPGM-- 235 (417)
T ss_pred ceEEEEcC--CC--CCCEEeecC--CCceecccCCCCCCEEEEEEc------CCCCcEEEEEECCCCCEEEeecCCCC--
Confidence 37899887 33 556777642 235788999999999999864 23457899999999888777654432
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|+|||+.|+++... + +..+||.+++
T Consensus 236 ---~~~~~~spDg~~l~~~~~~---------------------------------------~-------~~~~i~~~d~~ 266 (417)
T TIGR02800 236 ---NGAPAFSPDGSKLAVSLSK---------------------------------------D-------GNPDIYVMDLD 266 (417)
T ss_pred ---ccceEECCCCCEEEEEECC---------------------------------------C-------CCccEEEEECC
Confidence 4478999999999886110 0 2346999999
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
++..++++.. .....+.|+|||++|+|.+.+.. ..+||++++++++.++++... ..
T Consensus 267 ~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~~ 323 (417)
T TIGR02800 267 GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------GY 323 (417)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 7888888766 45568899999999999885432 127999999887777766432 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
...+.|||||+.|+|.... .....|+++++ .++..+.++... ....+.|+|||+.|+|....++.
T Consensus 324 ~~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~---~~~~~~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~- 388 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHRE----------GGGFNIAVMDL---DGGGERVLTDTG-LDESPSFAPNGRMILYATTRGGR- 388 (417)
T ss_pred ccCeEECCCCCEEEEEEcc----------CCceEEEEEeC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEeCCCc-
Confidence 2467899999988887221 12447899996 556666665433 35678999999999999887653
Q ss_pred eEEEEEcCCCC
Q 002194 481 TRTWVISPGSK 491 (954)
Q Consensus 481 ~~l~~~d~~~~ 491 (954)
..|++++.++.
T Consensus 389 ~~l~~~~~~g~ 399 (417)
T TIGR02800 389 GVLGLVSTDGR 399 (417)
T ss_pred EEEEEEECCCc
Confidence 67888887763
No 39
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=1.4e-17 Score=184.84 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=158.9
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
++..+.+.+|.++.+..+.|++ ..+.|+||++||..... . .+....+..|+++||.|++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~~~------------~--~~~~~~~~~l~~~g~~v~~-- 120 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGDTC------------T--FFFEGIARKIASSGYGVFA-- 120 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCCcc------------c--hHHHHHHHHHHhCCCEEEE--
Confidence 3444556799999999999863 12468999999953110 0 0012345677889999999
Q ss_pred CCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 720 TTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
.+.+|+|.+..... .+...++|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+++|+...
T Consensus 121 -~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 121 -MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred -ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 66778888764321 34667889998888887654455668999999999999999999999999999999886431
Q ss_pred CC--CC-----------------CC-Ccc-c-cchhhhcH-----------------------HHHHh-cCcccccCCCC
Q 002194 797 TL--TP-----------------FG-FQN-E-DRTLWEAT-----------------------STYVE-MSPFMSANKLK 830 (954)
Q Consensus 797 ~~--~~-----------------~~-~~~-~-~~~~~~~~-----------------------~~~~~-~sp~~~~~~~~ 830 (954)
.. .+ .. +.. . ....+... +.+.. ......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~ 279 (349)
T PLN02385 200 ADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVS 279 (349)
T ss_pred cccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 10 00 00 000 0 00000000 00000 01123456789
Q ss_pred CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc---HHHHHHHHHHHHHHhcc
Q 002194 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES---IMHVLWETDRWLQKYCV 899 (954)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~fl~~~l~ 899 (954)
+|+||+||++|.++| +..++++++.+... ++++++||+++|.+...+. ...++..|.+||++++.
T Consensus 280 ~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999999998 89999998877543 3588899999999753222 34588899999999863
No 40
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.78 E-value=1.2e-17 Score=184.66 Aligned_cols=323 Identities=18% Similarity=0.213 Sum_probs=199.4
Q ss_pred cCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceee
Q 002194 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (954)
Q Consensus 117 SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~w 196 (954)
||||++++|..+. . ...|-++...+||+++++ ++.++|+.. ......+.|
T Consensus 1 S~d~~~~l~~~~~----------------------~--~~~r~s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~ 50 (353)
T PF00930_consen 1 SPDGKFVLFATNY----------------------T--KQWRHSFKGDYYIYDIET----GEITPLTPP--PPKLQDAKW 50 (353)
T ss_dssp -TTSSEEEEEEEE----------------------E--EESSSEEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE
T ss_pred CCCCCeEEEEECc----------------------E--EeeeeccceeEEEEecCC----CceEECcCC--cccccccee
Confidence 8999999997762 1 112234457899999965 666666532 247899999
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc-cc------------cccceeEecCCeEEEEEec
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-NA------------IFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-~~------------~~~~~~wspDG~~l~~~~~ 263 (954)
||||++|+|+. +.+||+.+..+++.++||..+...+ ++ ....+.|||||+.|+|..-
T Consensus 51 sP~g~~~~~v~----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 51 SPDGKYIAFVR----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp -SSSTEEEEEE----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ecCCCeeEEEe----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 99999999987 5699999999999999998763221 11 1236779999999999955
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC------C-cccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP------P-AVYT 335 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~------~-~~~~ 335 (954)
+.+....... .........++ ....+.++.-+.. .....|+++++ +|+...+.. . ..+.
T Consensus 121 d~~~v~~~~~-------~~~~~~~~~yp---~~~~~~YPk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~ 187 (353)
T PF00930_consen 121 DEREVPEYPL-------PDYSPPDSQYP---EVESIRYPKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLT 187 (353)
T ss_dssp E-TTS-EEEE-------EEESSSTESS----EEEEEE--BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred CCcCCceEEe-------eccCCccccCC---cccccccCCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence 4443310000 00000000000 0000111111100 03456999999 776544432 1 4557
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec-cCCCCce
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTL 414 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws-pDg~~i~ 414 (954)
.+.|++|++.|++....+... ...+.++|..++..+.+....... +. .....+.|. +|+..++
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg~~~~~~~e~~~~----Wv----~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTGETRVVLEETSDG----WV----DVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EEEEEETTEEEEEEEEETTST--------EEEEEEEEECTTTCEEEEEEESSS----SS----SSSSEEEE-TTTSSEEE
T ss_pred cceecCCCcEEEEEEcccCCC--------EEEEEEEECCCCceeEEEEecCCc----ce----eeecccccccCCCCEEE
Confidence 899999999777766554311 126777888766555444211111 11 111345565 8898887
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc-eeeccCCceEEEEEeccc-cceEEEEEcCC-CC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-ISWCDDSLALVYESWYKT-RRTRTWVISPG-SK 491 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-~~~spDg~~l~~~~~~~~-~~~~l~~~d~~-~~ 491 (954)
+... . ++..+||+++. +++..++||.+++.+.. +.|+++++.|+|.+..++ .+.+||+++++ ++
T Consensus 252 ~~s~-~---------~G~~hly~~~~---~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 252 WISE-R---------DGYRHLYLYDL---DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-T---------TSSEEEEEEET---TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred EEEE-c---------CCCcEEEEEcc---cccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 7754 3 34779999996 78888999999998854 789999999999988644 56899999999 64
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEee
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 530 (954)
+++.|+...... +. ++|||||++++....+
T Consensus 319 --~~~~LT~~~~~~-~~------~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 319 --EPKCLTCEDGDH-YS------ASFSPDGKYYVDTYSG 348 (353)
T ss_dssp --EEEESSTTSSTT-EE------EEE-TTSSEEEEEEES
T ss_pred --CeEeccCCCCCc-eE------EEECCCCCEEEEEEcC
Confidence 677887655433 22 7899999999888743
No 41
>PHA02857 monoglyceride lipase; Provisional
Probab=99.78 E-value=2.2e-17 Score=177.46 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=154.7
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+.+.||..+++.+|.|.. .+.|+|+++||.... .......+..|+++||.|++ .|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via---~D~ 60 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT------YPKALVFISHGAGEH---------------SGRYEELAENISSLGILVFS---HDH 60 (276)
T ss_pred eecCCCCEEEEEeccCCC------CCCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEE---ccC
Confidence 345699999999998842 236899999996311 11123467778889999999 777
Q ss_pred CCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC
Q 002194 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~ 800 (954)
+|+|.+.... ..+...++|+...++++.+.. ...+++++|||+||.+|+.++.++|++++++|+++|..+.....
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~ 138 (276)
T PHA02857 61 IGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP 138 (276)
T ss_pred CCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc
Confidence 7888875422 233556788888888876642 23579999999999999999999999999999999865422100
Q ss_pred C-----------CCccc----cchhh--h---cHHHHH-------------------hc--CcccccCCCCCCEEEEEeC
Q 002194 801 F-----------GFQNE----DRTLW--E---ATSTYV-------------------EM--SPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 801 ~-----------~~~~~----~~~~~--~---~~~~~~-------------------~~--sp~~~~~~~~~P~Lii~G~ 839 (954)
. .+... ....+ . ....+. .. .....+.++++|+|++||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~ 218 (276)
T PHA02857 139 RLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGT 218 (276)
T ss_pred HHHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecC
Confidence 0 00000 00000 0 000000 00 0112456789999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc--HHHHHHHHHHHHHHh
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES--IMHVLWETDRWLQKY 897 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~ 897 (954)
+|.++| +..+.++++.+.. ++++.++++++|....... ++.+++.+.+||+++
T Consensus 219 ~D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 219 NNEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999998 8999888887643 4789999999999865433 678999999999986
No 42
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.77 E-value=2.8e-18 Score=160.72 Aligned_cols=238 Identities=17% Similarity=0.189 Sum_probs=175.4
Q ss_pred CCCCCCcCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHH-H
Q 002194 628 PHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-L 706 (954)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 706 (954)
+-+.|....++.+++++.+.|..++++++.+-+. ..|+++++|+.... + ++.-..+ .
T Consensus 43 ~vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGN-------m--------Ghr~~i~~~ 100 (300)
T KOG4391|consen 43 NVPTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGN-------M--------GHRLPIARV 100 (300)
T ss_pred CCCCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCc-------c--------cchhhHHHH
Confidence 3445666778899999999999999999998322 37999999995311 1 1111122 2
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 707 LWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
.+...+..|+. ..++|||.+++... -..+.-|..++++||..++..|..+|.++|.|.||..|+.+|++..+++.|
T Consensus 101 fy~~l~mnv~i---vsYRGYG~S~Gsps-E~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~ 176 (300)
T KOG4391|consen 101 FYVNLKMNVLI---VSYRGYGKSEGSPS-EEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISA 176 (300)
T ss_pred HHHHcCceEEE---EEeeccccCCCCcc-ccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheee
Confidence 34568999999 55678888876432 245677899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCC--CCCCCccc--cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002194 787 GIARSGAYNRTL--TPFGFQNE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (954)
Q Consensus 787 ~v~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (954)
+|...-+.+... .+..+... .-..|.-.. .++....+.+.+.|+|++.|..|..|| +-+.+++|+...+.
T Consensus 177 ~ivENTF~SIp~~~i~~v~p~~~k~i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~- 250 (300)
T KOG4391|consen 177 IIVENTFLSIPHMAIPLVFPFPMKYIPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSR- 250 (300)
T ss_pred eeeechhccchhhhhheeccchhhHHHHHHHHh---hhcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchh-
Confidence 999887665311 22222211 111122111 334445566788999999999999999 99999999988765
Q ss_pred CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhccc
Q 002194 863 ALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (954)
Q Consensus 863 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (954)
.+++..||++.|.-+... .-+++.|.+||.+..+.
T Consensus 251 -~Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 251 -TKRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred -hhhheeCCCCccCceEEe--ccHHHHHHHHHHHhccC
Confidence 458899999999865433 45678899999987654
No 43
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2e-17 Score=166.98 Aligned_cols=325 Identities=16% Similarity=0.226 Sum_probs=197.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+-.++|||||++||.-+.+ ..+++||+.+. .+....++ +..+
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------------------------------~TvR~WD~~Te---Tp~~t~Kg--H~~W 159 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------------------------------TTVRLWDLDTE---TPLFTCKG--HKNW 159 (480)
T ss_pred EEEEEecCCCceEEecCCC---------------------------------ceEEeeccCCC---CcceeecC--CccE
Confidence 4467899999999887765 68899999541 12222333 2248
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEe-----cCCeEEEEEec
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWV-----NNSTLLVCTIP 263 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~ws-----pDG~~l~~~~~ 263 (954)
+..++|||||++||... ....|.++|+.+|+. +.|..+.. + +..++|- |.+++|+.+
T Consensus 160 VlcvawsPDgk~iASG~---------~dg~I~lwdpktg~~~g~~l~gH~K-~----It~Lawep~hl~p~~r~las~-- 223 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGS---------KDGSIRLWDPKTGQQIGRALRGHKK-W----ITALAWEPLHLVPPCRRLASS-- 223 (480)
T ss_pred EEEEEECCCcchhhccc---------cCCeEEEecCCCCCcccccccCccc-c----eeEEeecccccCCCccceecc--
Confidence 99999999999999844 467888889888765 33433332 2 6778886 566666644
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~S 340 (954)
+ ..+.+.++|+ .| ....+... ..++-+.|-
T Consensus 224 -------------------s----------------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 224 -------------------S----------------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred -------------------c----------------------------CCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 1 1123555566 33 34445444 777888887
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCc-ccCCccccccccCccceeeccCCCCceEEEE
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~-~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
-+| ++|++.. +.+|.+|+... .-.+.+..+..- +.+....+. -.+.=+|-|-|+..--..+
T Consensus 257 G~g--liySgS~------------DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy---~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 257 GEG--LIYSGSQ------------DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY---VLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred CCc--eEEecCC------------CceEEEEEccchhHHHhhcccchheeeeeccchh---hhhccccccccccCCChHH
Confidence 555 7776633 34899998874 344555443311 000000000 0011233344432110000
Q ss_pred ------------eccCCCccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 419 ------------TQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 419 ------------~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
..+.+...+..+....+++|+ |.... ...+.+.+..-+..+.||||+++|+.++.++. .+||.
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~--p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS--VkLW~ 395 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWN--PFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS--VKLWD 395 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEec--ccccccchhhhhchhhheeeEEECCCccEEEEeecccc--eeeee
Confidence 001111112234556889998 45544 34567888888999999999999999988775 66775
Q ss_pred EcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 486 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
.+ +| +....+.++...+|. ++||.|.+.|+..+.+ ..|.+||+.+++..
T Consensus 396 g~--tG--k~lasfRGHv~~VYq------vawsaDsRLlVS~SkD---------------------sTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 396 GR--TG--KFLASFRGHVAAVYQ------VAWSADSRLLVSGSKD---------------------STLKVWDVRTKKLK 444 (480)
T ss_pred CC--Cc--chhhhhhhccceeEE------EEeccCccEEEEcCCC---------------------ceEEEEEeeeeeec
Confidence 44 33 334445667777777 8999999988877632 24999999888765
Q ss_pred EEeccCcccccceeEEeccCCccccccccCCEEE
Q 002194 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (954)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (954)
.=....++ .+.. .+|||||.+++
T Consensus 445 ~DLpGh~D----EVf~-------vDwspDG~rV~ 467 (480)
T KOG0271|consen 445 QDLPGHAD----EVFA-------VDWSPDGQRVA 467 (480)
T ss_pred ccCCCCCc----eEEE-------EEecCCCceee
Confidence 43332222 1222 47999998754
No 44
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=164.61 Aligned_cols=219 Identities=17% Similarity=0.199 Sum_probs=160.7
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (954)
..+.+..++..|..+.+..+.|+.+ ..++++|+||..+..+ +. ..+...+.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~Dlg----q~-----------~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAADLG----QM-----------VELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccchH----HH-----------HHHHHHHhhcccceEE
Confidence 4566777888898999999888642 3689999999522111 00 011222222 489999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
. +|+.|+|.+.+...- ...++|+.++.+||++... .+++|+++|+|+|...++.+|++.| .+|+|+++|+.+.
T Consensus 93 ~---~DYSGyG~S~G~psE-~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKPSE-RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCccc-ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 788899998664322 3789999999999999865 7789999999999999999999997 9999999998773
Q ss_pred CCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
....+ .....+.| +..+.-++.+..+++|+||+||++|++|+ ..++++++++++.+ ++..+..|+||.
T Consensus 166 ~rv~~--~~~~~~~~-----~d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVAF--PDTKTTYC-----FDAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhhc--cCcceEEe-----eccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 32211 11111222 12223366778889999999999999999 99999999999877 788889999997
Q ss_pred CCCcccHHHHHHHHHHHHHHhc
Q 002194 877 YAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.. +...++.+.+..|+..-+
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhc
Confidence 53 333466677777776543
No 45
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.76 E-value=2.2e-16 Score=180.56 Aligned_cols=253 Identities=16% Similarity=0.152 Sum_probs=180.1
Q ss_pred CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCC
Q 002194 198 QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPL 277 (954)
Q Consensus 198 PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~ 277 (954)
..+.+|+|.+... .++..+||++|.+++..++++..... +..+.|||||+.|+|+....
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~~------------ 211 (417)
T TIGR02800 153 AFSTRIAYVSKSG----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFES------------ 211 (417)
T ss_pred CcCCEEEEEEEeC----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcCC------------
Confidence 3467899987532 35678999999998888989875542 45889999999999872100
Q ss_pred CCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCc
Q 002194 278 GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPY 355 (954)
Q Consensus 278 ~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~ 355 (954)
+..+||++++ +|+.+.+... +....+.|||||+.|+|+.....
T Consensus 212 ----------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~- 256 (417)
T TIGR02800 212 ----------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG- 256 (417)
T ss_pred ----------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC-
Confidence 2246999999 7877776654 55667999999999999864321
Q ss_pred ccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeE
Q 002194 356 SFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII 435 (954)
Q Consensus 356 ~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l 435 (954)
..+|++++++++..+.++..... ...+.|+|||+.|+|..+. .....|
T Consensus 257 ---------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~l~~~s~~----------~g~~~i 304 (417)
T TIGR02800 257 ---------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKSIAFTSDR----------GGSPQI 304 (417)
T ss_pred ---------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCEEEEEECC----------CCCceE
Confidence 23799999998877777654311 2357899999999887321 123479
Q ss_pred EEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCe
Q 002194 436 YTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMM 515 (954)
Q Consensus 436 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 515 (954)
|++++ .+++.++++........+.|||||+.|+|.....+ ..+|+.++++++ ..+.++.... .. . +
T Consensus 305 y~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~-~~~i~~~d~~~~--~~~~l~~~~~--~~----~--p 370 (417)
T TIGR02800 305 YMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG-GFNIAVMDLDGG--GERVLTDTGL--DE----S--P 370 (417)
T ss_pred EEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC-ceEEEEEeCCCC--CeEEccCCCC--CC----C--c
Confidence 99996 66777777766556678999999999999876553 468999999874 4444443211 11 1 5
Q ss_pred eeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEecc
Q 002194 516 RRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (954)
Q Consensus 516 ~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 570 (954)
.|+|||++|+|..... ....|++++.+++..+.++..
T Consensus 371 ~~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 371 SFAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred eECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECCCC
Confidence 7999999999987421 123588888877766666554
No 46
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=6.7e-17 Score=165.83 Aligned_cols=212 Identities=20% Similarity=0.193 Sum_probs=163.6
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.++++..+ .++.+++.+|++ +++.|.||++|+-. +........++.||.+||.|++++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 456777666 899999999986 34459999999842 111223356788999999999977
Q ss_pred CCCCCCCCCccc--c----h-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 720 TTPIIGEGDEEA--N----D-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 720 ~~~~~G~G~~~~--~----~-----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
.+...|...... . . ........|+.++++||..++.+++++|+++|+||||.+++.++.+.| .++|+|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 765444222211 0 0 112567899999999999999899999999999999999999999986 799999
Q ss_pred EeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
+..|..-. +......++++|+|+.+|+.|..+| ...-..+.+++...++.+++.
T Consensus 141 ~fyg~~~~------------------------~~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIA------------------------DDTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCC------------------------CcccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 99884210 0111145788999999999999998 888889999999998899999
Q ss_pred EeCCCCCcCCCcc----------cHHHHHHHHHHHHHHhcc
Q 002194 869 ILPFESHGYAARE----------SIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 869 ~~~~~~H~~~~~~----------~~~~~~~~i~~fl~~~l~ 899 (954)
+|+++.|+|.... ..+..++++++||++++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999997431 246788899999999874
No 47
>PRK10749 lysophospholipase L2; Provisional
Probab=99.76 E-value=9.3e-17 Score=176.41 Aligned_cols=229 Identities=15% Similarity=0.140 Sum_probs=156.9
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.+...+...+|.++++..+.|+. +.++||++||... ........+..++++||.|+.
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~~---------------~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRIE---------------SYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCccc---------------hHHHHHHHHHHHHHCCCeEEE-
Confidence 35566777899999998887631 2468999999521 111112345567889999999
Q ss_pred CCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 719 PTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 719 ~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
.|.+|+|.+... .......++|+.++++.+... .+..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 666788877432 123466778888888877554 23468999999999999999999999999999999
Q ss_pred ccCCCCCCC-C---------------------------CC-Cc--c----ccchhh-hcHHHHHhcCc------------
Q 002194 791 SGAYNRTLT-P---------------------------FG-FQ--N----EDRTLW-EATSTYVEMSP------------ 822 (954)
Q Consensus 791 ~~~~~~~~~-~---------------------------~~-~~--~----~~~~~~-~~~~~~~~~sp------------ 822 (954)
+|....... + +. .. . ...... ...+.+. .+|
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYA-DDPELRVGGPTYHWV 241 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH-hCCCcccCCCcHHHH
Confidence 886431100 0 00 00 0 000000 0001111 111
Q ss_pred ----------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC---CcEEEEEeCCCCCcCCCccc--HHHHH
Q 002194 823 ----------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARES--IMHVL 887 (954)
Q Consensus 823 ----------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~~--~~~~~ 887 (954)
...+.+++.|+||+||++|.+|+ +..++++++.++..+ .++++++||+++|.+..... ++.++
T Consensus 242 ~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~ 319 (330)
T PRK10749 242 RESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVAL 319 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHH
Confidence 13456788999999999999999 899999999987765 34689999999999764443 67788
Q ss_pred HHHHHHHHHh
Q 002194 888 WETDRWLQKY 897 (954)
Q Consensus 888 ~~i~~fl~~~ 897 (954)
+.|++||+++
T Consensus 320 ~~i~~fl~~~ 329 (330)
T PRK10749 320 NAIVDFFNRH 329 (330)
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 48
>PRK10162 acetyl esterase; Provisional
Probab=99.75 E-value=8.1e-17 Score=174.94 Aligned_cols=231 Identities=16% Similarity=0.147 Sum_probs=158.8
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (954)
..+.++++..+| .+.+.+|.|.. . +.|+||++|||.|..+ +...+ ......|+. .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~---~---~~p~vv~~HGGg~~~g--------~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP---D---SQATLFYLHGGGFILG--------NLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC---C---CCCEEEEEeCCcccCC--------Cchhh----hHHHHHHHHHcCCEEE
Confidence 467788887777 59999999953 1 2699999999865432 22222 134556776 699999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC------CCcccEE
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (954)
.++|+.... ..++..++|+.++++|+.++ ..+|+++|+|+|+|+||++|+.++.+. +..++++
T Consensus 117 ~vdYrlape--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPE--------ARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCC--------CCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 988764332 22345689999999999764 347899999999999999999988753 3568999
Q ss_pred EEeccCCCCCCCCCCCccccch-hh--hcHHH----HH-----hcCccccc--CCC---CCCEEEEEeCCCCCCCCchHH
Q 002194 788 IARSGAYNRTLTPFGFQNEDRT-LW--EATST----YV-----EMSPFMSA--NKL---KKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 788 v~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~-----~~sp~~~~--~~~---~~P~Lii~G~~D~~v~~~~~~ 850 (954)
|+++|+++.............. .+ ...+. |. ..+|.... ..+ -.|+||++|+.|.. .++
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L----~de 264 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPL----LDD 264 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcC----cCh
Confidence 9999987743211000000000 00 00011 10 12232211 223 36999999999976 468
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHHhcc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l~ 899 (954)
++.+.++|++.|+++++++|+++.|+|... +...+.++.+.+||.++++
T Consensus 265 ~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 265 SRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998533 2355778889999998864
No 49
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=2.8e-17 Score=160.30 Aligned_cols=232 Identities=17% Similarity=0.160 Sum_probs=161.2
Q ss_pred CCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEE
Q 002194 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (954)
Q Consensus 636 ~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (954)
..++-.++|++.+|.+|.||+.+|.. .+++.|+||..||-....+. +.-...|+..||+|
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~----~~~~~P~vV~fhGY~g~~g~----------------~~~~l~wa~~Gyav 112 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRH----EKGKLPAVVQFHGYGGRGGE----------------WHDMLHWAVAGYAV 112 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeecc----cCCccceEEEEeeccCCCCC----------------ccccccccccceeE
Confidence 34567899999999999999999975 23569999999994221111 11234578899999
Q ss_pred EEcCCCCCCCCCC----c---------------c-cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 716 LGGPTTPIIGEGD----E---------------E-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 716 ~~~~~~~~~G~G~----~---------------~-~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
+.++.+|..+... . . .+..+....+.|+..+++.+.+...+|++||++.|.|.||.+++.
T Consensus 113 f~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglala 192 (321)
T COG3458 113 FVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALA 192 (321)
T ss_pred EEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhh
Confidence 9966665544311 0 0 011223456899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCcccc-----chhh--------hcHHHHHhcCcccccCCCCCCEEEEEeCCCC
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----RTLW--------EATSTYVEMSPFMSANKLKKPILLVHGEEDN 842 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~ 842 (954)
+++.. .+++++++..|++...-.-+....+. .... +-.+.+...+-.+.+.+++.|+|+..|-.|+
T Consensus 193 aaal~-~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~ 271 (321)
T COG3458 193 AAALD-PRIKAVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDP 271 (321)
T ss_pred hhhcC-hhhhcccccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCC
Confidence 99999 57999999999765211111111000 0000 0112223334456778899999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+|| +.-...+|+++... +++.+||.-+|.-.. ....++++.|+..-
T Consensus 272 vcp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~p----~~~~~~~~~~l~~l 317 (321)
T COG3458 272 VCP--PSTQFAAYNALTTS---KTIEIYPYFAHEGGP----GFQSRQQVHFLKIL 317 (321)
T ss_pred CCC--ChhhHHHhhcccCC---ceEEEeeccccccCc----chhHHHHHHHHHhh
Confidence 998 88888888887644 677788877787532 12334567777653
No 50
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.74 E-value=4.8e-16 Score=171.91 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=190.1
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCC
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~ 276 (954)
||||+.++|..+....-..+....+|++|+++++.++++..... ...+.|||||+.|+|+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~-----~~~~~~sP~g~~~~~v--------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPK-----LQDAKWSPDGKYIAFV--------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETT-----BSEEEE-SSSTEEEEE---------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccc-----cccceeecCCCeeEEE---------------
Confidence 89999999977654333345678999999999999999876222 5689999999999998
Q ss_pred CCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCc-------------------cccc
Q 002194 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-------------------VYTS 336 (954)
Q Consensus 277 ~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~-------------------~~~~ 336 (954)
...+||+.++ ++..++|+..+ ....
T Consensus 61 -----------------------------------~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 61 -----------------------------------RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp -----------------------------------ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred -----------------------------------ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 2345888887 77777777642 1235
Q ss_pred cccCCCCcEEEEEeecCCccc--------------------ccccCCC---CcceEEEeccCceEEEeccCCCcccCCcc
Q 002194 337 LDPSPDEKYILISSIHRPYSF--------------------IVPCGRF---PRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~--------------------~~~~~~~---~~~l~l~d~~g~~~~~l~~~~~~~~~p~~ 393 (954)
+.|||||++|||...+...-. ..|.... ...++++++++++...+......
T Consensus 106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~------ 179 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL------ 179 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH------
T ss_pred eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc------
Confidence 669999999999886642100 0011111 12567777776654433322100
Q ss_pred ccccccCccceeeccCCCCceEE-EEeccCCCccccccCCCeEEEEecCCCCCCCceEEee--ccccc---Cceeec-cC
Q 002194 394 FNSVRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRY---GGISWC-DD 466 (954)
Q Consensus 394 ~~~~~~g~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~---~~~~~s-pD 466 (954)
.........+.|++|++.+++. .++. ...-.++++++ .++..+.+.. .+.-+ ..+.|. ++
T Consensus 180 -~~~~~yl~~v~W~~d~~~l~~~~~nR~---------q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 180 -NPQDYYLTRVGWSPDGKRLWVQWLNRD---------QNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp -HTSSEEEEEEEEEETTEEEEEEEEETT---------STEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred -CCCccCcccceecCCCcEEEEEEcccC---------CCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 0001223568999999955554 3332 12335677775 4444444421 12222 235555 89
Q ss_pred CceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGAT 546 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~ 546 (954)
+..+++.+..++ ..+||.++.+++ .++.+|.+...... .+.++++++.|+|.. ....
T Consensus 247 ~~~~l~~s~~~G-~~hly~~~~~~~--~~~~lT~G~~~V~~------i~~~d~~~~~iyf~a--------------~~~~ 303 (353)
T PF00930_consen 247 GNEFLWISERDG-YRHLYLYDLDGG--KPRQLTSGDWEVTS------ILGWDEDNNRIYFTA--------------NGDN 303 (353)
T ss_dssp SSEEEEEEETTS-SEEEEEEETTSS--EEEESS-SSS-EEE------EEEEECTSSEEEEEE--------------SSGG
T ss_pred CCEEEEEEEcCC-CcEEEEEccccc--ceeccccCceeecc------cceEcCCCCEEEEEe--------------cCCC
Confidence 999988888554 689999999986 45666655433211 155667777777666 3322
Q ss_pred CCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCc
Q 002194 547 PEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (954)
Q Consensus 547 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~ 609 (954)
....+||.++++ +++.++||...+.. ...+|||||++++..++++..|+
T Consensus 304 --p~~r~lY~v~~~~~~~~~~LT~~~~~~------------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 304 --PGERHLYRVSLDSGGEPKCLTCEDGDH------------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp --TTSBEEEEEETTETTEEEESSTTSSTT------------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred --CCceEEEEEEeCCCCCeEeccCCCCCc------------eEEEECCCCCEEEEEEcCCCCCC
Confidence 245789999999 99999999888651 13579999999999999998874
No 51
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.72 E-value=1.3e-15 Score=169.07 Aligned_cols=231 Identities=15% Similarity=0.132 Sum_probs=158.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.....+...+|..+++..|.|.. ..+.|+||++||.... ......++..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 45566777888899999998853 1235899999995311 01112456678889999999
Q ss_pred CCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---cccEEEEecc
Q 002194 719 PTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH---LFCCGIARSG 792 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~~ 792 (954)
++..|+|.+.... .......+|+.++++++.... +..++.++||||||.+++.++. +|+ +++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 6777888775432 234566889999999997652 2347999999999999987664 553 7999999998
Q ss_pred CCCCCCC---------------C-CCCcccc---chhhhcHHH----H------------------Hhc-C-cccccCCC
Q 002194 793 AYNRTLT---------------P-FGFQNED---RTLWEATST----Y------------------VEM-S-PFMSANKL 829 (954)
Q Consensus 793 ~~~~~~~---------------~-~~~~~~~---~~~~~~~~~----~------------------~~~-s-p~~~~~~~ 829 (954)
....... + +.+.... .....++.. + .+. . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 7542210 0 0000000 000000000 0 000 0 12345678
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
++|+||+||++|.++| +..++++++.+... .+++++||+++|........+.+++.+.+||..++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999987543 357888999999986655788999999999999874
No 52
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.71 E-value=3.5e-16 Score=173.18 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=159.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...+.|||||+.++|+... ... + ..++++++.. ++...+... ...
T Consensus 195 ~~~p~ws~~~~~~~y~~f~---------------------~~~-~-------~~i~~~~l~~----g~~~~i~~~--~g~ 239 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFE---------------------LGG-C-------PRIYYLDLNT----GKRPVILNF--NGN 239 (425)
T ss_pred eeccccCcCCCceEEEEEe---------------------cCC-C-------ceEEEEeccC----Cccceeecc--CCc
Confidence 4468999999999998653 111 0 2689999865 444455432 346
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...|+|||||++|+|+.. +++..+||++|+.++..++||...+. -..+.|||||+.|+|++.
T Consensus 240 ~~~P~fspDG~~l~f~~~------rdg~~~iy~~dl~~~~~~~Lt~~~gi-----~~~Ps~spdG~~ivf~Sd------- 301 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSS------RDGSPDIYLMDLDGKNLPRLTNGFGI-----NTSPSWSPDGSKIVFTSD------- 301 (425)
T ss_pred cCCccCCCCCCEEEEEEC------CCCCccEEEEcCCCCcceecccCCcc-----ccCccCCCCCCEEEEEeC-------
Confidence 789999999999999875 66899999999999998888877664 348999999999999821
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (954)
.+ +..+||++++ .+..++++.. +....+.|||||++|+|
T Consensus 302 --------------r~-------------------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 302 --------------RG-------------------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred --------------CC-------------------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 10 4557999999 5677888877 66669999999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
.+..+. ..++.+.++..+. .+.++..... ..+.|+|||+.+.|.....
T Consensus 343 ~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~~~--------------e~ps~~~ng~~i~~~s~~~------- 391 (425)
T COG0823 343 ESSSGG----------QWDIDKNDLASGGKIRILTSTYLN--------------ESPSWAPNGRMIMFSSGQG------- 391 (425)
T ss_pred EeccCC----------ceeeEEeccCCCCcEEEccccccC--------------CCCCcCCCCceEEEeccCC-------
Confidence 983321 1257777776443 5555543222 3567999999998872221
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeecc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~sp 465 (954)
....++.... ++...+.+....+.+..++|+|
T Consensus 392 ---~~~~l~~~s~---~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 392 ---GGSVLSLVSL---DGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred ---CCceEEEeec---cceeEEEEeccCcceecccccC
Confidence 2345666653 5544445544555666677765
No 53
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.70 E-value=1.1e-15 Score=169.36 Aligned_cols=229 Identities=18% Similarity=0.233 Sum_probs=163.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCc-eEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSK-LRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~-~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
.++++.|- || -..+.++. ....+..|.|||||+.|+|..-.. +. .++|++++++++..++......
T Consensus 173 ~~l~~~D~--dg--~~~~~l~~--~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~- 239 (425)
T COG0823 173 YELALGDY--DG--YNQQKLTD--SGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN- 239 (425)
T ss_pred ceEEEEcc--CC--cceeEecc--cCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-
Confidence 46777654 33 33444442 233678899999999999986422 23 7999999999888777665443
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
-..++|||||++|+|+... | +..+||++|+
T Consensus 240 ----~~~P~fspDG~~l~f~~~r---------------------------------------d-------g~~~iy~~dl 269 (425)
T COG0823 240 ----NGAPAFSPDGSKLAFSSSR---------------------------------------D-------GSPDIYLMDL 269 (425)
T ss_pred ----cCCccCCCCCCEEEEEECC---------------------------------------C-------CCccEEEEcC
Confidence 3589999999999998211 1 4457999999
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
++..++|++. +...++.|||||++|+|++++.. ..+|++++.+|+..++++......
T Consensus 270 ~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~----------- 328 (425)
T COG0823 270 DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGN----------- 328 (425)
T ss_pred CCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCC-----------
Confidence 6677778887 77779999999999999986643 228999999999988888754322
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTR 479 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~ 479 (954)
..+.|||||++|+|.. ..++ .-.+...++ .++...+.+ ........++|+++|+.|.|.+...+
T Consensus 329 --~~p~~SpdG~~i~~~~--~~~g--------~~~i~~~~~--~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~~- 392 (425)
T COG0823 329 --SNPVWSPDGDKIVFES--SSGG--------QWDIDKNDL--ASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQGG- 392 (425)
T ss_pred --cCccCCCCCCEEEEEe--ccCC--------ceeeEEecc--CCCCcEEEc-cccccCCCCCcCCCCceEEEeccCCC-
Confidence 2577999999999983 1111 124555553 333334444 44445678999999999999987653
Q ss_pred ceEEEEEcCCCC
Q 002194 480 RTRTWVISPGSK 491 (954)
Q Consensus 480 ~~~l~~~d~~~~ 491 (954)
...|+.++.++.
T Consensus 393 ~~~l~~~s~~g~ 404 (425)
T COG0823 393 GSVLSLVSLDGR 404 (425)
T ss_pred CceEEEeeccce
Confidence 467888887763
No 54
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.70 E-value=3.6e-15 Score=177.67 Aligned_cols=194 Identities=20% Similarity=0.217 Sum_probs=145.7
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcC--CCC------------CCcEEEEeeC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRG--VAH------------PSKIAVGGHS 767 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~--~~d------------~~ri~l~G~S 767 (954)
.+..+|+.+||+|+. .+.+|.|.|.+.. .+...+.+|..++|+||..+. +.| ..+|+++|.|
T Consensus 270 ~~~~~~~~rGYaVV~---~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~S 346 (767)
T PRK05371 270 SLNDYFLPRGFAVVY---VSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKS 346 (767)
T ss_pred hHHHHHHhCCeEEEE---EcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEc
Confidence 456789999999999 5566666666542 334778999999999998642 233 4799999999
Q ss_pred hHHHHHHHHHHhCCCcccEEEEeccCCCCCCC--C-------CCCcccc---------------------chhhh-----
Q 002194 768 YGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-------FGFQNED---------------------RTLWE----- 812 (954)
Q Consensus 768 ~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--~-------~~~~~~~---------------------~~~~~----- 812 (954)
|||++++.+|+..|+.++|+|+++++.++... . .++..+. ...++
T Consensus 347 Y~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~ 426 (767)
T PRK05371 347 YLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAE 426 (767)
T ss_pred HHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhh
Confidence 99999999999988999999999988764211 0 0110000 00000
Q ss_pred -----------cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 813 -----------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 813 -----------~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++|++|+..++++++.+.++ +|......
T Consensus 427 ~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~ 503 (767)
T PRK05371 427 LTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNW 503 (767)
T ss_pred hhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCch
Confidence 011234456777888999999999999999998 8999999999999999999988776 78764444
Q ss_pred cHHHHHHHHHHHHHHhcccCC
Q 002194 882 SIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 882 ~~~~~~~~i~~fl~~~l~~~~ 902 (954)
...++.+.+++||++||+...
T Consensus 504 ~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 504 QSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hHHHHHHHHHHHHHhccccCC
Confidence 556788899999999998643
No 55
>PRK11460 putative hydrolase; Provisional
Probab=99.66 E-value=8.9e-15 Score=151.21 Aligned_cols=128 Identities=22% Similarity=0.150 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHH
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYV 818 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (954)
....+.+.++++.++..+++++|+++|+|+||.+++.++.+.|+.++++|+.++.+.. ..
T Consensus 83 ~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~~-------------- 142 (232)
T PRK11460 83 IMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------LP-------------- 142 (232)
T ss_pred HHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------cc--------------
Confidence 3455666777777777788899999999999999999999998888888887763210 00
Q ss_pred hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 819 ~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
.....++|+|++||++|.+|| ++.+++++++|+..|.++++++||+++|.+. .+..+.+.+||.+.+
T Consensus 143 ------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYTV 209 (232)
T ss_pred ------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHHc
Confidence 001246899999999999999 9999999999999999999999999999985 355677888888877
Q ss_pred c
Q 002194 899 V 899 (954)
Q Consensus 899 ~ 899 (954)
.
T Consensus 210 ~ 210 (232)
T PRK11460 210 P 210 (232)
T ss_pred c
Confidence 4
No 56
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.65 E-value=1.1e-13 Score=146.13 Aligned_cols=328 Identities=13% Similarity=0.147 Sum_probs=166.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
+-....|.+||++|+|.++ .++..+||++|+++++.+|||..+... .....++|+++.|+|..
T Consensus 37 YF~~~~ft~dG~kllF~s~------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~------- 99 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVK------- 99 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEE-------
T ss_pred eecCCCcCCCCCEEEEEec------cCCCcceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEE-------
Confidence 5567899999999999764 568999999999999999999977532 22567889999988761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----~~~~~~~~SpDGk 344 (954)
...+|+.+|+ +++.+.|..- ..+.......|++
T Consensus 100 ------------------------------------------~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 100 ------------------------------------------NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp ------------------------------------------TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred ------------------------------------------CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 1235899999 8877666543 2223344466899
Q ss_pred EEEEEeecCCcccccc---------cCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 345 YILISSIHRPYSFIVP---------CGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~---------~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.++.....+..-...+ ..+-...|+.+|+.+++.+.+.... .....+.|||....++-
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-------------~wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-------------DWLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-------------S-EEEEEEETTEEEEEE
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-------------ccccCcccCCCCCCEEE
Confidence 8887654432111111 1234457888899988887776532 12246788885554444
Q ss_pred EEEeccCCCccccccC-CCeEEEEecCCCCCCCceEEeec--ccccCceeeccCCceEEEEEeccc-cceEEEEEcCCCC
Q 002194 416 WAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKT-RRTRTWVISPGSK 491 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~-~~~~l~~~d~~~~ 491 (954)
+...... .. ..+||+++. +|+..+.+... ...+..--|+|||..|+|.....+ ...-|+.++++++
T Consensus 205 fCHEGpw-------~~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 205 FCHEGPW-------DLVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EEE-S-T-------TTSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred EeccCCc-------ceeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 4332211 11 237999996 77776666332 222344689999999999776333 3456888999886
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
+.+.+...+...- +.-++||++++=-. .+.+.. + -...+..- .+.+.||+++++++..+.|...+
T Consensus 275 --~~~~~~~~p~~~H--------~~ss~Dg~L~vGDG--~d~p~~-v-~~~~~~~~-~~~p~i~~~~~~~~~~~~l~~h~ 339 (386)
T PF14583_consen 275 --ERRRLMEMPWCSH--------FMSSPDGKLFVGDG--GDAPVD-V-ADAGGYKI-ENDPWIYLFDVEAGRFRKLARHD 339 (386)
T ss_dssp ---EEEEEEE-SEEE--------EEE-TTSSEEEEEE------------------------EEEEEETTTTEEEEEEE--
T ss_pred --CceEEEeCCceee--------eEEcCCCCEEEecC--CCCCcc-c-ccccccee-cCCcEEEEeccccCceeeeeecc
Confidence 3344433332111 44689998664332 111100 0 00011111 24578999999999888776654
Q ss_pred cccccceeEE--eccCCccccccccCCEEEEEEecCCCCceEEEEECCC
Q 002194 572 KEKYYETTVA--LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPD 618 (954)
Q Consensus 572 ~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~ 618 (954)
.. + .+.. --.....++|||||++++|+..- ..++.||.++++.
T Consensus 340 ~s-w--~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 340 TS-W--KVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIPD 384 (386)
T ss_dssp --------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--C
T ss_pred Cc-c--eeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCcc
Confidence 11 0 0000 00123458999999999987665 4468899988653
No 57
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.65 E-value=1.4e-13 Score=143.02 Aligned_cols=171 Identities=11% Similarity=0.055 Sum_probs=122.0
Q ss_pred ccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCC
Q 002194 308 FDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (954)
Q Consensus 308 ~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~ 386 (954)
.....+++.++++. +|-..++...+++.-..++-|++.++....++. .+.+++.+|++.+++...-
T Consensus 335 ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD------------~l~iyd~~~~e~kr~e~~l- 401 (668)
T COG4946 335 IALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGD------------KLGIYDKDGGEVKRIEKDL- 401 (668)
T ss_pred EEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCc------------eEEEEecCCceEEEeeCCc-
Confidence 33336677888888 777778877766666677778887777664432 7889999999988776532
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~sp 465 (954)
+.+.++..|||||.++.. ..+..||++++ +++.++.+... .+-+..+.|+|
T Consensus 402 ------------g~I~av~vs~dGK~~vva-------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 402 ------------GNIEAVKVSPDGKKVVVA-------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred ------------cceEEEEEcCCCcEEEEE-------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcC
Confidence 345678899999988877 45678999997 77788777544 44567899999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
++++|+|+-...=-...|.+.|++++ +...+|.....+ .+ ++|.|||++|+|.+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~ta~D-----fs--PaFD~d~ryLYfLs 507 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPTAYD-----FS--PAFDPDGRYLYFLS 507 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCC--eEEEecCCcccc-----cC--cccCCCCcEEEEEe
Confidence 99999998654322245677777774 333444433332 22 56999999999987
No 58
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.64 E-value=2.2e-14 Score=153.02 Aligned_cols=230 Identities=19% Similarity=0.175 Sum_probs=158.8
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
.+-.+.+.||..+....+.+... +..+||++||.. .+...+...+..|..+||.|+.
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~-- 66 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA-- 66 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE--
Confidence 44567778999999999887631 137899999952 2333334567788999999999
Q ss_pred CCCCCCCCCcc-cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 720 TTPIIGEGDEE-AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 720 ~~~~~G~G~~~-~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|.+|+|.+. .. ...+...+.|+.+.++.+... .-..+++++||||||.+++.++.+++..++++|+.+|++.
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~ 143 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALG 143 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcccc
Confidence 8888999886 32 122456677777777777654 1235899999999999999999999999999999999876
Q ss_pred CCC--C-----------------CCCCcc----ccchhh--hcH---HHHHhcCc-----------------------cc
Q 002194 796 RTL--T-----------------PFGFQN----EDRTLW--EAT---STYVEMSP-----------------------FM 824 (954)
Q Consensus 796 ~~~--~-----------------~~~~~~----~~~~~~--~~~---~~~~~~sp-----------------------~~ 824 (954)
... . .+.+.. ....-| .++ +.|. .+| ..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~-~dP~~~~~~~~~~w~~~~~~a~~~~~~~ 222 (298)
T COG2267 144 LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYE-ADPLIGVGGPVSRWVDLALLAGRVPALR 222 (298)
T ss_pred CChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHh-cCCccccCCccHHHHHHHHHhhcccchh
Confidence 541 0 011111 000000 001 1111 122 11
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccH--HHHHHHHHHHHHHhcc
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (954)
...+++.|+||+||++|.+|+- .+...++++++.... +++.+|+|+.|.+....+. ..+++.+.+||.++..
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~~-~~~~~~~~~~~~~~~--~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVDN-VEGLARFFERAGSPD--KELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCccccC-cHHHHHHHHhcCCCC--ceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 2345689999999999999851 255566666554442 6999999999998877777 8899999999998763
No 59
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.64 E-value=7.9e-14 Score=147.17 Aligned_cols=313 Identities=17% Similarity=0.155 Sum_probs=160.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
......|.+||++|+|.+.. +.. .++|++++.+ ++.+|||..+ +.
T Consensus 37 YF~~~~ft~dG~kllF~s~~--------------------dg~----------~nly~lDL~t----~~i~QLTdg~-g~ 81 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDF--------------------DGN----------RNLYLLDLAT----GEITQLTDGP-GD 81 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-T--------------------TSS-----------EEEEEETTT-----EEEE---SS--B
T ss_pred eecCCCcCCCCCEEEEEecc--------------------CCC----------cceEEEEccc----CEEEECccCC-CC
Confidence 45577899999999998873 111 3899999966 7888888543 22
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe--cCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV--NNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws--pDG~~l~~~~~~~~~ 267 (954)
......+||+++.|+|.+. ..+|+.+|+++.+.+.+...+... .....|+ .|++.++........
T Consensus 82 ~~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~~vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d 148 (386)
T PF14583_consen 82 NTFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEERVVYEVPDDW----KGYGTWVANSDCTKLVGIEISRED 148 (386)
T ss_dssp -TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EEEEEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG
T ss_pred CccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEEEEEECCccc----ccccceeeCCCccEEEEEEEeehh
Confidence 3456789999999999763 468999999999999998888753 3356775 567777755110000
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCC-CCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~Sp-DGk 344 (954)
. ..+-....-...+.-.-...|+.+++ +|+.+.+... .....+.+|| |..
T Consensus 149 ~---------------------------~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 149 W---------------------------KPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp --------------------------------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred c---------------------------cCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 0 00000000001111113467999999 9988887765 6667888998 566
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.|+|.- ..| +...+..||+.+.+|+..+.+...... ..+..--|+|||+.|.|......+
T Consensus 202 li~fCH-EGp------w~~Vd~RiW~i~~dg~~~~~v~~~~~~-----------e~~gHEfw~~DG~~i~y~~~~~~~-- 261 (386)
T PF14583_consen 202 LIMFCH-EGP------WDLVDQRIWTINTDGSNVKKVHRRMEG-----------ESVGHEFWVPDGSTIWYDSYTPGG-- 261 (386)
T ss_dssp EEEEEE--S-------TTTSS-SEEEEETTS---EESS---TT-----------EEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred EEEEec-cCC------cceeceEEEEEEcCCCcceeeecCCCC-----------cccccccccCCCCEEEEEeecCCC--
Confidence 777765 333 334456899999999988887654321 122345699999999986332211
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc------------cceEEEEEcCCCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------------RRTRTWVISPGSKD 492 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~------------~~~~l~~~d~~~~~ 492 (954)
...-|+-++. .+++.+.+...++ ...+--++||+.+|=-..+.. ...-||++++..+
T Consensus 262 ------~~~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~- 330 (386)
T PF14583_consen 262 ------QDFWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG- 330 (386)
T ss_dssp --------EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTT-
T ss_pred ------CceEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC-
Confidence 1123455553 4455556654443 334555789887654332110 1135778888775
Q ss_pred CCcEEEecCC--CCCcc--CCCCCCCeeeccCCcEEEEEEe
Q 002194 493 VAPRILFDRS--SEDVY--SDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 493 ~~~~~l~~~~--~~~~~--~~~~~~~~~~spdG~~l~~~~~ 529 (954)
....+.... ..... -+...|-++|||||++|+|.+.
T Consensus 331 -~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 331 -RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp -EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred -ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 223332221 11111 1224566899999999999983
No 60
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.63 E-value=2.4e-14 Score=151.93 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=156.5
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIG 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G 725 (954)
.....+..+||+|....+.. +.|+|||+|||.|..+.... ..++.+...++ +.+..|+.++|
T Consensus 69 ~~~~~l~vRly~P~~~~~~~--~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~vvvSVdY----- 131 (336)
T KOG1515|consen 69 DPFTNLPVRLYRPTSSSSET--KLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCVVVSVDY----- 131 (336)
T ss_pred cCCCCeEEEEEcCCCCCccc--CceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeEEEecCc-----
Confidence 34456899999998754422 38999999999765543221 22334555554 57999999777
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEeeChHHHHHHHHHHhC------CCcccEEEEeccCCC
Q 002194 726 EGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGIARSGAYN 795 (954)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~av~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~~~~~ 795 (954)
+.++++.++..++|..+|+.|+.++ ..+|++||+|+|-|+||++|..++.+. +..+++.|++.|++.
T Consensus 132 ---RLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 132 ---RLAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred ---ccCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 5567778899999999999999886 469999999999999999999988643 356899999999876
Q ss_pred CCCC-CCCCc----cccchhhhcHHHHHh--------------cCccccc------CCCCCCEEEEEeCCCCCCCCchHH
Q 002194 796 RTLT-PFGFQ----NEDRTLWEATSTYVE--------------MSPFMSA------NKLKKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 796 ~~~~-~~~~~----~~~~~~~~~~~~~~~--------------~sp~~~~------~~~~~P~Lii~G~~D~~v~~~~~~ 850 (954)
.... .-.++ ......+...+.++. .+|..+. ...-.|+||+.++.|.. .++
T Consensus 209 ~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L----~D~ 284 (336)
T KOG1515|consen 209 GTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL----RDE 284 (336)
T ss_pred CCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh----hhh
Confidence 3221 10000 000001111111111 1222210 11124699999999965 689
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCcCCCc----ccHHHHHHHHHHHHHHh
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKY 897 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~ 897 (954)
+..+.++|++.|+++++..++++.|++... .......+.+.+|+++.
T Consensus 285 ~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 285 GLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999987422 24556777888888764
No 61
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.62 E-value=7.8e-15 Score=150.17 Aligned_cols=188 Identities=17% Similarity=0.114 Sum_probs=117.4
Q ss_pred EEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc--c
Q 002194 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--A 731 (954)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~--~ 731 (954)
+++|+|+++. +++|+||++||++..... +.. ...+...+.+.||+|+.+++++..+.+..+ .
T Consensus 1 ~~ly~P~~~~----~~~P~vv~lHG~~~~~~~-----------~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGLT----GPRALVLALHGCGQTASA-----------YVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCCC----CCCCEEEEeCCCCCCHHH-----------Hhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 4789998742 348999999997532111 100 001233445689999997776543221111 0
Q ss_pred -c--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCC-C-Ccc-
Q 002194 732 -N--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G-FQN- 805 (954)
Q Consensus 732 -~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~-~-~~~- 805 (954)
. .........|+...++++.++..+|++||+|+|+|+||++++.++.++|++|++++++++..-...... . +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 011224567888999999988789999999999999999999999999999999999887532111000 0 000
Q ss_pred -ccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002194 806 -EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (954)
Q Consensus 806 -~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (954)
.....-+..+...... ........|++|+||++|.+|| +..+++++++++..
T Consensus 145 ~~~~~~~~~~~~~~~~~--~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 CTAATAASVCRLVRGMQ--SEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred CCCCCHHHHHHHHhccC--CcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 0000000001111110 1112233457899999999999 99999999999876
No 62
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.62 E-value=2.8e-14 Score=155.73 Aligned_cols=223 Identities=20% Similarity=0.223 Sum_probs=151.9
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
...+..+.+.+|.|. .....+.|+|||+|||.|..+. .... .......++..|+.|+.++|+
T Consensus 58 ~~~~~~~~~~~y~p~---~~~~~~~p~vly~HGGg~~~g~--------~~~~---~~~~~~~~~~~g~~vv~vdYr---- 119 (312)
T COG0657 58 GPSGDGVPVRVYRPD---RKAAATAPVVLYLHGGGWVLGS--------LRTH---DALVARLAAAAGAVVVSVDYR---- 119 (312)
T ss_pred CCCCCceeEEEECCC---CCCCCCCcEEEEEeCCeeeecC--------hhhh---HHHHHHHHHHcCCEEEecCCC----
Confidence 345556789999992 1223358999999999654332 2111 123455566799999998884
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEeccCCCCCC
Q 002194 726 EGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTL 798 (954)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~~~ 798 (954)
..++..++..++|+.+++.|+.++. .+|+++|+|+|+|.||++++.++....+ ..++.+.++|.++...
T Consensus 120 ----laPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 120 ----LAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred ----CCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 3344456788999999999999873 5899999999999999999999876543 4788899999888664
Q ss_pred CCCCCcccc-ch-------h-hhcHHHH---------HhcCccccc--CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHH
Q 002194 799 TPFGFQNED-RT-------L-WEATSTY---------VEMSPFMSA--NKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (954)
Q Consensus 799 ~~~~~~~~~-~~-------~-~~~~~~~---------~~~sp~~~~--~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (954)
....+.... .. . |- ...| ...+|+... .. -.|+||++|+.|.+ ..++..+.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l----~~~~~~~a~~L 269 (312)
T COG0657 196 SAASLPGYGEADLLDAAAILAWF-ADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPL----RDEGEAYAERL 269 (312)
T ss_pred cccchhhcCCccccCHHHHHHHH-HHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcc----hhHHHHHHHHH
Confidence 110010000 00 0 10 0001 013343322 22 46899999999987 45899999999
Q ss_pred HhCCCcEEEEEeCCCCCcCCCc--ccHHHHHHHHHHHHHH
Q 002194 859 KGHGALCRLVILPFESHGYAAR--ESIMHVLWETDRWLQK 896 (954)
Q Consensus 859 ~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~ 896 (954)
+..|+++++..++++.|.|... ......+.++.+|+..
T Consensus 270 ~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 270 RAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999988322 2234456677777763
No 63
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=137.47 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=141.7
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc--cchhhHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--ANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~--~~~~~~~~~~~D~~~av~ 748 (954)
-.|+++||.. |++... ....+.|.++||.|.++++ .|+|... .-........+|+.++.+
T Consensus 16 ~AVLllHGFT-----------Gt~~Dv----r~Lgr~L~e~GyTv~aP~y---pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGFT-----------GTPRDV----RMLGRYLNENGYTVYAPRY---PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEeccC-----------CCcHHH----HHHHHHHHHCCceEecCCC---CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 6788899953 222111 2467778889999999665 4666542 223334677899999999
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcc-----------ccchhhhcHHHH
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----------EDRTLWEATSTY 817 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 817 (954)
+|.+.++ +.|+++|.||||.+|+.++.+.| .+++|..++..+.......+.. +....-...+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998875 48999999999999999999997 7888888876552211100000 000000111112
Q ss_pred HhcC----------------cccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 818 VEMS----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 818 ~~~s----------------p~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
..+. ....++.|..|+||+.|.+|+.|| .+.+.-+++.+... +.++.+|++.||.++...
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 2222 233567789999999999999999 88888898887654 579999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 002194 882 SIMHVLWETDRWLQ 895 (954)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (954)
.++.+.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 88999999999986
No 64
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.61 E-value=1.9e-15 Score=158.42 Aligned_cols=221 Identities=18% Similarity=0.213 Sum_probs=117.9
Q ss_pred cCCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccc---cCCCCCCCCcccHHHHHHHH
Q 002194 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQV---RGSPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 634 ~~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~ 710 (954)
...+..|++.|...++..+++++++|++. ++|.|.||++||.....-...+.. ......+..........||.
T Consensus 83 rdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 83 RDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp ETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred cCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 45567899999999999999999999874 567999999999632211100000 00001122223346788999
Q ss_pred CCcEEEEcCCCCCCCCCCccc----------------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeCh
Q 002194 711 RGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSY 768 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~ 768 (954)
+||+|++++.. |+|++.. ...+......|.+.+++||.+++.||++||+++|+||
T Consensus 159 ~GYVvla~D~~---g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 159 RGYVVLAPDAL---GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTSEEEEE--T---TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred CCCEEEEEccc---cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 99999995543 4443311 0122233467788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccEEEEeccCCCCC-----CCC------CCCcc----ccchhhhcHHHHHhcCcccccCCCCCCE
Q 002194 769 GAFMTANLLAHAPHLFCCGIARSGAYNRT-----LTP------FGFQN----EDRTLWEATSTYVEMSPFMSANKLKKPI 833 (954)
Q Consensus 769 GG~~a~~~a~~~p~~~~a~v~~~~~~~~~-----~~~------~~~~~----~~~~~~~~~~~~~~~sp~~~~~~~~~P~ 833 (954)
||+.++++++.+ ++++|+|+.+-+.... ++. .++.. --..+|...+...-.+ --...|+
T Consensus 236 Gg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIas-----liAPRPl 309 (390)
T PF12715_consen 236 GGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIAS-----LIAPRPL 309 (390)
T ss_dssp GHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHH-----TTTTS-E
T ss_pred cHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHH-----HhCCCcc
Confidence 999999999999 7899988776442210 000 00000 0001111111000000 1125799
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
|++.|..|..+| . .++.|+.. .++.+++++.||+
T Consensus 310 l~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 310 LFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp EESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GG
T ss_pred hhhcCCcccccH--H--HHHHHHhc-CCCcceEEeeccc
Confidence 999999998765 3 34444433 3345789999986
No 65
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.61 E-value=4.4e-15 Score=146.33 Aligned_cols=183 Identities=21% Similarity=0.310 Sum_probs=125.6
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH--HCCcEEEEcCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL--ARGFAILGGPTTPI 723 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--~~G~~V~~~~~~~~ 723 (954)
...|.++...+|.|+++.+.+|+ +|+||++||+.+.+.+..-++..+ .+ +..|+ +.++-|+++.+-..
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg------~g---aiawa~pedqcfVlAPQy~~i 237 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSG------IG---AIAWAGPEDQCFVLAPQYNPI 237 (387)
T ss_pred cccCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcC------cc---ceeeecccCceEEEccccccc
Confidence 34678999999999999988863 499999999865443322222211 11 11222 23456666554221
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCC
Q 002194 724 IGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (954)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~av~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~ 802 (954)
..-.++ ....+ .......++ -|.+++.||.+||.++|.|+||+++..++.+.|+.|+|++.++|--|.
T Consensus 238 f~d~e~-~t~~~----l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------ 306 (387)
T COG4099 238 FADSEE-KTLLY----LIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------ 306 (387)
T ss_pred cccccc-ccchh----HHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch------
Confidence 110001 11111 112223333 577788999999999999999999999999999999999999985331
Q ss_pred CccccchhhhcHHHHHhcCcccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002194 803 FQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (954)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (954)
...++.+ +.|+.++|+.+|.++| .++++-+++.|+..+.++++..|.
T Consensus 307 --------------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 --------------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred --------------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhh
Confidence 1112222 5799999999999999 999999999999998888877776
No 66
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.59 E-value=2.9e-14 Score=167.11 Aligned_cols=232 Identities=20% Similarity=0.261 Sum_probs=150.8
Q ss_pred EcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC
Q 002194 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (954)
Q Consensus 645 ~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (954)
+..||.+|.+.+|+|++ .++.|+||++||....... ...+.......|+++||+|+. .+.+
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~~-----------~~~~~~~~~~~l~~~Gy~vv~---~D~R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAGL-----------RWGLDKTEPAWFVAQGYAVVI---QDTR 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchhh-----------ccccccccHHHHHhCCcEEEE---Eecc
Confidence 56799999999999974 2358999999985311000 000111235678999999999 5556
Q ss_pred CCCCcccchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---C
Q 002194 725 GEGDEEANDRFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---P 800 (954)
Q Consensus 725 G~G~~~~~~~~~-~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~ 800 (954)
|+|.+....... ....+|+.++++|+.+++..+ .+|+++|+||||.+++.++...|+.++|+|+.+++.+.... .
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~ 141 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFP 141 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccC
Confidence 777765532222 568899999999999998776 69999999999999999999998999999999887653210 0
Q ss_pred CCCccc-------------cc--------------hhhh---cHH-------------------------------HHHh
Q 002194 801 FGFQNE-------------DR--------------TLWE---ATS-------------------------------TYVE 819 (954)
Q Consensus 801 ~~~~~~-------------~~--------------~~~~---~~~-------------------------------~~~~ 819 (954)
-.+... .. .... ... .+..
T Consensus 142 g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 221 (550)
T TIGR00976 142 GALRLDVLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVS 221 (550)
T ss_pred CeeccchhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhcc
Confidence 000000 00 0000 000 0001
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCC--------cccHHHHHH--H
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA--------RESIMHVLW--E 889 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--------~~~~~~~~~--~ 889 (954)
.+....++++++|+|++.|-.|.. ...+.+.|+.+...+ +.++++=|. .|.... ......... +
T Consensus 222 ~~~~~~~~~i~vP~l~~~gw~D~~----~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~ 295 (550)
T TIGR00976 222 ISLWRDLGGSDVPTLVTGGWYDNH----SRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAE 295 (550)
T ss_pred CchhhHhcCCCCCEEEeCcccCCC----CchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhh
Confidence 122235567899999999999943 467778888887654 567776664 675210 000011112 4
Q ss_pred HHHHHHHhcccCC
Q 002194 890 TDRWLQKYCVSNT 902 (954)
Q Consensus 890 i~~fl~~~l~~~~ 902 (954)
+++||++||+...
T Consensus 296 ~~~wfD~~Lkg~~ 308 (550)
T TIGR00976 296 QLAFFDRHLKGGT 308 (550)
T ss_pred hHHHHHHHhCCCC
Confidence 6899999998643
No 67
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.59 E-value=1.4e-14 Score=155.15 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=136.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc-HHHHHHHHCCc
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGF 713 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~ 713 (954)
...+.++++++-. |.+|++++.+|++ .+|.|+||++-|- ..+..-.. .+...|+.+|+
T Consensus 161 ~~~~i~~v~iP~e-g~~I~g~LhlP~~-----~~p~P~VIv~gGl---------------Ds~qeD~~~l~~~~l~~rGi 219 (411)
T PF06500_consen 161 SDYPIEEVEIPFE-GKTIPGYLHLPSG-----EKPYPTVIVCGGL---------------DSLQEDLYRLFRDYLAPRGI 219 (411)
T ss_dssp SSSEEEEEEEEET-TCEEEEEEEESSS-----SS-EEEEEEE--T---------------TS-GGGGHHHHHCCCHHCT-
T ss_pred CCCCcEEEEEeeC-CcEEEEEEEcCCC-----CCCCCEEEEeCCc---------------chhHHHHHHHHHHHHHhCCC
Confidence 3456788888864 5899999999974 4579999987653 11211111 12235788999
Q ss_pred EEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 714 AILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 714 ~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
++++ .+..|.|.+.... .-+..-.-..++++||.+.+++|.+||+++|.|+||++|..+|...+++++|+|+..|+
T Consensus 220 A~Lt---vDmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 220 AMLT---VDMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp EEEE---E--TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred EEEE---EccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCch
Confidence 9999 6667777653211 10111112347899999999999999999999999999999998877899999999987
Q ss_pred CCCCCCCCCCcccc------------chh---hhc-HHHHHhcCccc--cc--CCCCCCEEEEEeCCCCCCCCchHHHHH
Q 002194 794 YNRTLTPFGFQNED------------RTL---WEA-TSTYVEMSPFM--SA--NKLKKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 794 ~~~~~~~~~~~~~~------------~~~---~~~-~~~~~~~sp~~--~~--~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
++..+......... +.. ++. ...+..+|... .+ .++.+|+|.+.|++|.++| .++.+-
T Consensus 296 vh~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~l 373 (411)
T PF06500_consen 296 VHHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRL 373 (411)
T ss_dssp -SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHH
T ss_pred HhhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHH
Confidence 65333211100000 000 000 11124455433 23 6678899999999999998 777655
Q ss_pred HHHHHHhCCCcEEEEEeCCCC-CcCCCcccHHHHHHHHHHHHHHhc
Q 002194 854 FFNALKGHGALCRLVILPFES-HGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~-H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
++. .+.+-+...++... |. .....+..+.+||++.|
T Consensus 374 ia~----~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 374 IAE----SSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp HHH----TBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHh----cCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 433 34444555666433 43 23567888999999865
No 68
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.59 E-value=2.8e-14 Score=132.82 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=141.6
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
+..+-+....|. +.+ .|.|.. ....|+.|.+|..|...+.. .+......+..|.++||+++.
T Consensus 4 ~~~v~i~Gp~G~-le~-~~~~~~-----~~~~~iAli~HPHPl~gGtm----------~nkvv~~la~~l~~~G~atlR- 65 (210)
T COG2945 4 MPTVIINGPAGR-LEG-RYEPAK-----TPAAPIALICHPHPLFGGTM----------NNKVVQTLARALVKRGFATLR- 65 (210)
T ss_pred CCcEEecCCccc-cee-ccCCCC-----CCCCceEEecCCCccccCcc----------CCHHHHHHHHHHHhCCceEEe-
Confidence 344555554442 333 344432 23479999999987654433 233334567778899999999
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL 798 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~ 798 (954)
++++|-|++.+.-+.+-.+.+|+.++++|++++.. +..-..++|+|+|+++++.++.+.|+ ....|++.|..+.
T Consensus 66 --fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~-- 139 (210)
T COG2945 66 --FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA-- 139 (210)
T ss_pred --ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--
Confidence 66667777776656667789999999999999842 22235889999999999999999865 6666777776441
Q ss_pred CCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 799 TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+. ...+..+..|.|+|+|+.|++|+ .....++.+ +.+.+++..++++|.|.
T Consensus 140 ~d----------------------fs~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~-----~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 140 YD----------------------FSFLAPCPSPGLVIQGDADDVVD--LVAVLKWQE-----SIKITVITIPGADHFFH 190 (210)
T ss_pred hh----------------------hhhccCCCCCceeEecChhhhhc--HHHHHHhhc-----CCCCceEEecCCCceec
Confidence 10 11233456899999999999987 665555544 25678889999999984
Q ss_pred CcccHHHHHHHHHHHHH
Q 002194 879 ARESIMHVLWETDRWLQ 895 (954)
Q Consensus 879 ~~~~~~~~~~~i~~fl~ 895 (954)
.....+.+.+.+|+.
T Consensus 191 --gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 --GKLIELRDTIADFLE 205 (210)
T ss_pred --ccHHHHHHHHHHHhh
Confidence 345677788888884
No 69
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.57 E-value=9.3e-14 Score=152.02 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=148.6
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccC-------------CCCCCCCcccHHHHHHHH
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG-------------SPNEFPRIGSTSVLLWLA 710 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~ 710 (954)
+.+.||..|..+.+.|+. +..+|+++||....... .+++. .++++..+...++..|++
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 466799999999988752 35799999994322110 00000 001121122356788999
Q ss_pred CCcEEEEcCCCCCCCCCCcccc---h---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEee
Q 002194 711 RGFAILGGPTTPIIGEGDEEAN---D---RFVEQLVACAEAAVEEVVRR------------------GVAHPSKIAVGGH 766 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~---~---~~~~~~~~D~~~av~~l~~~------------------~~~d~~ri~l~G~ 766 (954)
+||.|+. .+.+|+|.+... . ..+...++|+...++.+.+. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 777788876532 1 23566778888888887652 1111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------cccEEEEeccCCCCCCC-----------------------C-CCCccccchhh--h
Q 002194 767 SYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLT-----------------------P-FGFQNEDRTLW--E 812 (954)
Q Consensus 767 S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~~~~~~-----------------------~-~~~~~~~~~~~--~ 812 (954)
||||.+++.++...++ .++++|+.+|++..... + +.........+ .
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998865432 58899988876421100 0 00000000000 0
Q ss_pred cHHHHHhcCc----------------------ccccCCC--CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002194 813 ATSTYVEMSP----------------------FMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (954)
Q Consensus 813 ~~~~~~~~sp----------------------~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (954)
..+.+ ..+| ...+.++ ++|+|++||++|.+|+ ++.++++++++... ++++.
T Consensus 230 ~~~~~-~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~~--~~~l~ 304 (332)
T TIGR01607 230 VNDII-KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSIS--NKELH 304 (332)
T ss_pred hhhHH-hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccCC--CcEEE
Confidence 00000 0011 1123344 6899999999999998 88888888776543 46888
Q ss_pred EeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 869 ILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+|++++|.+......+++++.+.+||+
T Consensus 305 ~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 305 TLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred EECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 999999999766667889999999985
No 70
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.57 E-value=1.2e-14 Score=149.24 Aligned_cols=180 Identities=21% Similarity=0.212 Sum_probs=122.4
Q ss_pred EEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002194 673 LFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (954)
Q Consensus 673 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (954)
||++|||.|..+... ....+...+++ .|++|+..+|+- .++..++..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~~------------~~~~~~~~la~~~g~~v~~~~Yrl--------~p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKE------------SHWPFAARLAAERGFVVVSIDYRL--------APEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGTT------------THHHHHHHHHHHHTSEEEEEE-----------TTTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCChH------------HHHHHHHHHHhhccEEEEEeeccc--------cccccccccccccccceeeec
Confidence 789999976544321 12345666675 999999988843 344456789999999999999
Q ss_pred Hc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEeccCCCC-CCCCCCC------cc-----cc--chh
Q 002194 752 RR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNR-TLTPFGF------QN-----ED--RTL 810 (954)
Q Consensus 752 ~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~~~-~~~~~~~------~~-----~~--~~~ 810 (954)
++ ..+|+++|+|+|+|.||.+++.++.+..+ .++++++++|.+|. ......+ .. .. ...
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 97 35789999999999999999999875432 48999999998776 2111100 00 00 000
Q ss_pred hhc-----HHHHHhcCcccccCCC--CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 811 WEA-----TSTYVEMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 811 ~~~-----~~~~~~~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
++. .......+|+.. ..+ -.|++|++|+.|.. ..++..++++|++.|++++++++++++|.|
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 110 000112345544 223 24999999999965 678999999999999999999999999986
No 71
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.56 E-value=3.1e-13 Score=144.03 Aligned_cols=229 Identities=16% Similarity=0.143 Sum_probs=143.3
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
+.+.+. .+|..+.++++.|.+- + .+.||++|||+... .+. + ......+..|+++||.|+.
T Consensus 3 ~~~~~~-~~~~~l~g~~~~p~~~---~---~~~vv~i~gg~~~~-------~g~---~-~~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFS-CEGETLVGVLHIPGAS---H---TTGVLIVVGGPQYR-------VGS---H-RQFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEE-cCCcEEEEEEEcCCCC---C---CCeEEEEeCCcccc-------CCc---h-hHHHHHHHHHHHCCCEEEE--
Confidence 456666 4678899999998641 1 24566667653110 000 0 0112456778899999999
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
++..|+|.+............|+.++++++.++. ...++|.++|||+||.+++.++... +.++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 6667888875543344567899999999998752 1225799999999999999987664 679999999986432110
Q ss_pred CCC------Cc--cccchhhhc-----------HHHHHh----cCc--------------ccccCCCCCCEEEEEeCCCC
Q 002194 800 PFG------FQ--NEDRTLWEA-----------TSTYVE----MSP--------------FMSANKLKKPILLVHGEEDN 842 (954)
Q Consensus 800 ~~~------~~--~~~~~~~~~-----------~~~~~~----~sp--------------~~~~~~~~~P~Lii~G~~D~ 842 (954)
... +. ......|.. ...+.. ..+ ...+.++++|+|+++|+.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 00 000011110 011111 101 01234668999999999997
Q ss_pred CCCCchHH-----HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 843 NSGTLTMQ-----SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 843 ~v~~~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
..+ ... +.++.+.+.. ..++++.+|+++|.++.......+.+.|.+||+
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 643 111 0222222322 357899999999988777777889999999985
No 72
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=6.4e-14 Score=144.02 Aligned_cols=273 Identities=14% Similarity=0.134 Sum_probs=183.3
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccc---------cccceeeeeeecCCC-C-CCcceeeEeceEEEEccCC
Q 002194 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELA---------RPEEKLAGLRIDGKC-N-TRSRMSFYTGIGIHQLFPD 173 (954)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~l~~~~~~ 173 (954)
+-+..++....||+||+.||..+..+...+|... .+..+++.+.+.|.. + ...+.+.++.+.+|+++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3456678889999999999999988777776444 455566788888884 3 4445566688999998431
Q ss_pred CCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec
Q 002194 174 GKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 174 g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
.....|+++ ...+..++|.|+|++|+..+- +....|| |+.+++...+-.+.... +.+++|.+
T Consensus 252 ---~~l~~l~gH--~~RVs~VafHPsG~~L~Tasf-------D~tWRlW--D~~tk~ElL~QEGHs~~----v~~iaf~~ 313 (459)
T KOG0272|consen 252 ---TPLQDLEGH--LARVSRVAFHPSGKFLGTASF-------DSTWRLW--DLETKSELLLQEGHSKG----VFSIAFQP 313 (459)
T ss_pred ---cchhhhhcc--hhhheeeeecCCCceeeeccc-------ccchhhc--ccccchhhHhhcccccc----cceeEecC
Confidence 122334442 248999999999999998762 2345555 66676655444443333 77999999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC-CC
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~-~~ 331 (954)
||..++... .+ ...+| +|+ +|.-..+. ..
T Consensus 314 DGSL~~tGG---------------------lD--------------------------~~~Rv--WDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 314 DGSLAATGG---------------------LD--------------------------SLGRV--WDLRTGRCIMFLAGH 344 (459)
T ss_pred CCceeeccC---------------------cc--------------------------chhhe--eecccCcEEEEeccc
Confidence 999777541 00 12233 366 77544433 33
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+.+++|||+|-.||..+.++ .+.|||+..... +...| . +..-+..+.|+|++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dn-------------t~kVWDLR~r~~--ly~ip------A----H~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDN-------------TCKVWDLRMRSE--LYTIP------A----HSNLVSQVKYSPQE 399 (459)
T ss_pred ccceeeEeECCCceEEeecCCCC-------------cEEEeeeccccc--ceecc------c----ccchhhheEecccC
Confidence 7788999999999999887543 788999986432 22221 1 12334678899955
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
...+.. .+..+.+-+|.- .+....+.|.+++..+.++..|+||..|+..+.+.+ .+||.
T Consensus 400 g~fL~T------------asyD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT--~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVT------------ASYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT--IKLWR 458 (459)
T ss_pred CeEEEE------------cccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccCce--eeecc
Confidence 443333 133445555652 345566788899999999999999999999887765 66763
No 73
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.54 E-value=5e-13 Score=137.16 Aligned_cols=129 Identities=26% Similarity=0.301 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHh
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (954)
.+-+.+.++...+.+ ++++||+++|+|+||.||+.++.++|..++++|+++|..-.... +
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-----------~-------- 146 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-----------L-------- 146 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC-----------C--------
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc-----------c--------
Confidence 333444445444444 89999999999999999999999999999999999985421100 0
Q ss_pred cCcccccCC-CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 820 MSPFMSANK-LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 820 ~sp~~~~~~-~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
...... -++|+|++||+.|.+|| ...+++.++.|+..+.++++..|++.||.+. .+.+..+.+||.+++
T Consensus 147 ---~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 147 ---EDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp ---HCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred ---cccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 000011 16899999999999999 9999999999999999999999999999985 466788999998863
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.53 E-value=1.2e-11 Score=134.54 Aligned_cols=268 Identities=14% Similarity=0.084 Sum_probs=158.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|++|++.+ ++.... +..+..+..+.|+|||+.++.+.. ....|+++|+++++..........
T Consensus 11 ~~v~~~d~~t----~~~~~~--~~~~~~~~~l~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTAT----LEVTRT--FPVGQRPRGITLSKDGKLLYVCAS--------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCC----CceEEE--EECCCCCCceEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 4788999853 332222 222234667899999998765432 246789999988876543322221
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
...+.|+|||+.++++.. ....|+++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEECC
Confidence 346889999998876510 1235778888
Q ss_pred CCce-eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~-~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
+++. ..+........+.|+|||+++++..... ..+.+||.++.+........ ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------QR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------CC
Confidence 5432 3332223456789999999999876432 14556787755432211110 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC-ceEEeec-------ccccCceeeccCCceEEE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL-------DLRYGGISWCDDSLALVY 472 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~-------~~~~~~~~~spDg~~l~~ 472 (954)
...++|+|||+.+++.. ...+.+++|++ .+++ .+.+... ......++|+|||+.++.
T Consensus 159 ~~~~~~s~dg~~l~~~~------------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS------------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ccEEEECCCCCEEEEEc------------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 34688999999765541 12347888886 3333 2333211 112245789999998766
Q ss_pred EEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCC
Q 002194 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (954)
+...+ .++.++|..++ +...... ....+.. +.|+|||++|+.... ...
T Consensus 224 ~~~~~---~~i~v~d~~~~--~~~~~~~-~~~~~~~------~~~~~~g~~l~~~~~--------------------~~~ 271 (300)
T TIGR03866 224 ALGPA---NRVAVVDAKTY--EVLDYLL-VGQRVWQ------LAFTPDEKYLLTTNG--------------------VSN 271 (300)
T ss_pred EcCCC---CeEEEEECCCC--cEEEEEE-eCCCcce------EEECCCCCEEEEEcC--------------------CCC
Confidence 54332 35777787764 2222111 1111222 789999998876531 123
Q ss_pred eEEEEECCCCCeEEEec
Q 002194 553 FLDLFDINTGSKERIWE 569 (954)
Q Consensus 553 ~l~~~d~~~g~~~~l~~ 569 (954)
.|.+||+++++...-..
T Consensus 272 ~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 59999999988644333
No 75
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.53 E-value=1.4e-13 Score=146.68 Aligned_cols=213 Identities=24% Similarity=0.304 Sum_probs=136.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (954)
||++|.+.+|+| +... .+|+|+||..|+....... ..... ............|+++||+||. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~~--~~~~P~il~~tpY~~~~~~-~~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADG--GGPFPVILTRTPYGKGDQT-ASDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---TT--SSSEEEEEEEESSTCTC-H-HHHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCCC--CCcccEEEEccCcCCCCCc-ccchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 799999999999 3222 4569999999874211000 00000 0000000011238999999999 6666777
Q ss_pred Ccccchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-C--CCC
Q 002194 728 DEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P--FGF 803 (954)
Q Consensus 728 ~~~~~~~~-~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~--~~~ 803 (954)
.|++.-.. ...+.+|..++|+|+.+++..+ .||+++|.||+|+.++.+|+..|..++|++...+..|.... . -+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77765444 6889999999999999997765 69999999999999999999888899999999887774431 0 000
Q ss_pred ccc-cchhh---------------------h-------------------------------cHHHHHhcCcccccCCCC
Q 002194 804 QNE-DRTLW---------------------E-------------------------------ATSTYVEMSPFMSANKLK 830 (954)
Q Consensus 804 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~sp~~~~~~~~ 830 (954)
... ....| . ..+.+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00001 0 001122233444568899
Q ss_pred CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCc
Q 002194 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG 876 (954)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 876 (954)
+|+|+++|-.|..+ ...+.+.|++|+..+ ++.++++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999765 478999999999998 7889998886 674
No 76
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.53 E-value=1.9e-13 Score=131.07 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=105.0
Q ss_pred EEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 002194 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (954)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~ 751 (954)
+||++||+... ......++..|+++||.|+.+ +..+.|.+.. ..++..+++++.
T Consensus 1 ~vv~~HG~~~~---------------~~~~~~~~~~l~~~G~~v~~~---~~~~~~~~~~--------~~~~~~~~~~~~ 54 (145)
T PF12695_consen 1 VVVLLHGWGGS---------------RRDYQPLAEALAEQGYAVVAF---DYPGHGDSDG--------ADAVERVLADIR 54 (145)
T ss_dssp EEEEECTTTTT---------------THHHHHHHHHHHHTTEEEEEE---SCTTSTTSHH--------SHHHHHHHHHHH
T ss_pred CEEEECCCCCC---------------HHHHHHHHHHHHHCCCEEEEE---ecCCCCccch--------hHHHHHHHHHHH
Confidence 58899996321 011235677889999999994 4455555411 124445555543
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCC
Q 002194 752 RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK 831 (954)
Q Consensus 752 ~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 831 (954)
+.. .|+++|+++|||+||.+++.++.+. +.++++|+++|..+ ...+.+.+.
T Consensus 55 ~~~-~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~---------------------------~~~~~~~~~ 105 (145)
T PF12695_consen 55 AGY-PDPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD---------------------------SEDLAKIRI 105 (145)
T ss_dssp HHH-CTCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG---------------------------CHHHTTTTS
T ss_pred hhc-CCCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc---------------------------hhhhhccCC
Confidence 322 2889999999999999999999998 78999999998200 112335567
Q ss_pred CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
|+|+++|++|..++ +++.++++++++ .+.+++++++++|+
T Consensus 106 pv~~i~g~~D~~~~--~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 106 PVLFIHGENDPLVP--PEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEEEEEETT-SSSH--HHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred cEEEEEECCCCcCC--HHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 99999999999998 899999999887 45899999999995
No 77
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.52 E-value=5.5e-13 Score=141.43 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=124.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|+||++||..... ..| ........+||.|++ .+..|+|.+.... .......+|+.+.
T Consensus 13 ~~~iv~lhG~~~~~-----------~~~-----~~~~~~l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGSG-----------SYW-----APQLDVLTQRFHVVT---YDHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcch-----------hHH-----HHHHHHHHhccEEEE---EcCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 68899999963211 111 112233457899999 6666777764321 1234445555555
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-------------CC-----------
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-------------FG----------- 802 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-------------~~----------- 802 (954)
++.+ +..++.++||||||.+++.++.++|+.++++|.+++........ ..
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5543 34689999999999999999999999999999888743321000 00
Q ss_pred -Cc----cccch-----------h-------hhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 803 -FQ----NEDRT-----------L-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 803 -~~----~~~~~-----------~-------~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
+. ..... . ......+...+....+.++++|+|+++|++|..+| ++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00 00000 0 00001111122334566789999999999999998 888888877654
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
. .+++.++++||... .++.+.+.+.+.+||+
T Consensus 226 ~----~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 N----AQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred C----ceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3 47888999999874 5667778888888875
No 78
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.51 E-value=1.8e-13 Score=147.66 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=115.3
Q ss_pred HHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 705 VLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
...+++.||.|++ .+.+|+|.+.... .......+|+.++++.+ +.+++.++||||||.+++.++.++|
T Consensus 53 ~~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p 123 (282)
T TIGR03343 53 IGPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIEKAHLVGNSMGGATALNFALEYP 123 (282)
T ss_pred HHHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHHHHHc------CCCCeeEEEECchHHHHHHHHHhCh
Confidence 3456778999999 6667888885431 11112345555554443 4569999999999999999999999
Q ss_pred CcccEEEEeccCCCCC--CCCCC---------------------------Cccc--c----chhhh----cHH---HHHh
Q 002194 782 HLFCCGIARSGAYNRT--LTPFG---------------------------FQNE--D----RTLWE----ATS---TYVE 819 (954)
Q Consensus 782 ~~~~a~v~~~~~~~~~--~~~~~---------------------------~~~~--~----~~~~~----~~~---~~~~ 819 (954)
++++++|++++..... ..... +... . ...|. .+. .+..
T Consensus 124 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (282)
T TIGR03343 124 DRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLI 203 (282)
T ss_pred HhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHH
Confidence 9999999988642100 00000 0000 0 00000 000 0100
Q ss_pred ---------cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHH
Q 002194 820 ---------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWET 890 (954)
Q Consensus 820 ---------~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 890 (954)
.+....+.++++|+|+++|++|..++ ++.++++++.+. ++++++++++||... .+....+.+.+
T Consensus 204 ~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~~~~~----~~~~~~i~~agH~~~-~e~p~~~~~~i 276 (282)
T TIGR03343 204 SSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLLWNMP----DAQLHVFSRCGHWAQ-WEHADAFNRLV 276 (282)
T ss_pred hccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHHHhCC----CCEEEEeCCCCcCCc-ccCHHHHHHHH
Confidence 01112356789999999999999998 888888877664 368899999999974 67777888889
Q ss_pred HHHHH
Q 002194 891 DRWLQ 895 (954)
Q Consensus 891 ~~fl~ 895 (954)
.+||.
T Consensus 277 ~~fl~ 281 (282)
T TIGR03343 277 IDFLR 281 (282)
T ss_pred HHHhh
Confidence 99885
No 79
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.51 E-value=2.4e-13 Score=136.03 Aligned_cols=187 Identities=21% Similarity=0.198 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCc-
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDE- 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~- 729 (954)
|...||+|++... ++.|+||++||...... .+... .. ...+++ +||+|+.+...........
T Consensus 1 l~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a~---~~~~~---------s~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAPR---GPVPLVVVLHGCGQSAE---DFAAG---------SG-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCCC---CCCCEEEEeCCCCCCHH---HHHhh---------cC-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 3568999997532 35899999999743221 11110 01 123454 7999998654211100011
Q ss_pred -ccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-CC-Cc
Q 002194 730 -EAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-FG-FQ 804 (954)
Q Consensus 730 -~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-~~-~~ 804 (954)
+.. ..........+...++++.++..+|++||+++|+|.||+|+..+++.+|++|+|+..++|..-..... .. +.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 101 11122345556788899999989999999999999999999999999999999999998753211110 00 00
Q ss_pred --cc--cchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002194 805 --NE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (954)
Q Consensus 805 --~~--~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (954)
.. ...+-.......... ..-..|++|+||+.|.+|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~a~~~~g-----~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWGARSDAG-----AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHHhhhhcc-----CCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 00 000000000011110 0113599999999999998 88888888877654
No 80
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.50 E-value=8.8e-13 Score=143.55 Aligned_cols=225 Identities=15% Similarity=0.167 Sum_probs=134.2
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
....+++...+|..+... |...+ ++ + .|.||++||.+... ..| ...+..|.++||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~--~--~~~lvliHG~~~~~-----------~~w----~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA--D--GPPVLLLHGEPSWS-----------YLY----RKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC--C--CCEEEEECCCCCch-----------hhH----HHHHHHHHhCCCEEEE
Confidence 345566665566544422 22222 11 1 46789999963111 011 1344556678999999
Q ss_pred cCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+..|+|.+.... .......+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++.
T Consensus 79 ---~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 79 ---PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred ---ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 6777888875422 12344455555444432 3458999999999999999999999999999988753
Q ss_pred CCCCCC-------CCC-Cccc------------cchhh---hcHHHHH----------------h---cCc---------
Q 002194 794 YNRTLT-------PFG-FQNE------------DRTLW---EATSTYV----------------E---MSP--------- 822 (954)
Q Consensus 794 ~~~~~~-------~~~-~~~~------------~~~~~---~~~~~~~----------------~---~sp--------- 822 (954)
...... .+. +... ....+ +....|. . ..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 150 LPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 210000 000 0000 00000 0000000 0 000
Q ss_pred --ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 823 --~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...+.++++|+|+++|++|..+| ... +++.+.+... ..+++.+++++||... .+..+.+.+.+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 01246788999999999999987 654 6666655432 1134778999999974 677788889999998764
No 81
>PLN02511 hydrolase
Probab=99.49 E-value=5.5e-13 Score=149.04 Aligned_cols=235 Identities=14% Similarity=0.097 Sum_probs=146.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEc
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (954)
.++..+...||..+....+.+...... ...|+||++||....+ ...+.......+.++||.|++
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~~--~~~p~vvllHG~~g~s-------------~~~y~~~~~~~~~~~g~~vv~- 134 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRALP--ADAPVLILLPGLTGGS-------------DDSYVRHMLLRARSKGWRVVV- 134 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccCC--CCCCEEEEECCCCCCC-------------CCHHHHHHHHHHHHCCCEEEE-
Confidence 445566778988887655443211111 1268999999963110 011111234456789999999
Q ss_pred CCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--ccEEEEeccCC
Q 002194 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAY 794 (954)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~ 794 (954)
.+.+|+|.+... ..+.....+|+.++++++..+. ...++.++|+||||.+++.+++++|+. +.+++++++..
T Consensus 135 --~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 135 --FNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred --EecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 566677766432 2233455789999999998763 235899999999999999999999876 78888777654
Q ss_pred CCCC------CCC--C----Cc---------------------c-----ccchh--h-----------hc-HHHHHhcCc
Q 002194 795 NRTL------TPF--G----FQ---------------------N-----EDRTL--W-----------EA-TSTYVEMSP 822 (954)
Q Consensus 795 ~~~~------~~~--~----~~---------------------~-----~~~~~--~-----------~~-~~~~~~~sp 822 (954)
+... ..+ . +. . ..... + .. .+.|.+.++
T Consensus 211 ~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~ 290 (388)
T PLN02511 211 DLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSS 290 (388)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCc
Confidence 4210 000 0 00 0 00000 0 01 112344556
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHH------HHHHHHHHHHH
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIM------HVLWETDRWLQ 895 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~------~~~~~i~~fl~ 895 (954)
...+.++++|+|+|+|++|+++| .... ..+ .....++++++++++||... .+... -..+.+.+||+
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~~~----~~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~ 363 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAP--ARGIPRED----IKANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLE 363 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCC--cccCcHhH----HhcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHH
Confidence 67788899999999999999987 5433 122 12234579999999999753 22211 24567889998
Q ss_pred Hhccc
Q 002194 896 KYCVS 900 (954)
Q Consensus 896 ~~l~~ 900 (954)
.....
T Consensus 364 ~~~~~ 368 (388)
T PLN02511 364 ALEEG 368 (388)
T ss_pred HHHHh
Confidence 77643
No 82
>COG0400 Predicted esterase [General function prediction only]
Probab=99.48 E-value=2e-12 Score=127.99 Aligned_cols=130 Identities=23% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHH
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (954)
......+.++++.+.++..+|.+|+++.|+|.|+.+++.++.++|+.++++|+.+|.+-....
T Consensus 77 ~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------- 139 (207)
T COG0400 77 DLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-----------------
Confidence 344566677777777777899999999999999999999999999999999999986432110
Q ss_pred HHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 817 ~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.....-.+|+|++||+.|++|| ...+.++.+.|+..|.+++...++ +||.+. .+.++.+.+|+.+
T Consensus 140 -------~~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~ 204 (207)
T COG0400 140 -------LLPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLAN 204 (207)
T ss_pred -------cccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHh
Confidence 0011235899999999999999 999999999999999999999999 799985 4556777888877
Q ss_pred hc
Q 002194 897 YC 898 (954)
Q Consensus 897 ~l 898 (954)
.+
T Consensus 205 ~~ 206 (207)
T COG0400 205 TL 206 (207)
T ss_pred cc
Confidence 53
No 83
>PLN00021 chlorophyllase
Probab=99.47 E-value=4.2e-12 Score=136.05 Aligned_cols=209 Identities=16% Similarity=0.112 Sum_probs=133.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (954)
...+++.+|+|.. .+++|+||++||+... .......+..|+++||.|++++.++..+.+
T Consensus 36 ~~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~~- 94 (313)
T PLN00021 36 SPPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGPD- 94 (313)
T ss_pred CCCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCCC-
Confidence 3468899999964 2459999999996321 111224566788999999997765432211
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEeeChHHHHHHHHHHhCCC-----cccEEEEeccCCC
Q 002194 729 EEANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYN 795 (954)
Q Consensus 729 ~~~~~~~~~~~~~D~~~av~~l~~~--------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~~ 795 (954)
....++|..++++|+.+. ..+|.++++++|||+||.+++.++..+++ +|+++|.+.|+..
T Consensus 95 -------~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 95 -------GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred -------chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 122345666777777652 23677899999999999999999998864 5789998888644
Q ss_pred CCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCC---------CCCCchHHHHHHHHHHHhCCCcEE
Q 002194 796 RTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN---------NSGTLTMQSDRFFNALKGHGALCR 866 (954)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~---------~v~~~~~~~~~~~~~l~~~g~~~~ 866 (954)
..... ... +..+ .+.+ ...++..|+||+++..|. ..| ...+-.++|+.++. ++.
T Consensus 168 ~~~~~--~~~--------p~il-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap-~~~~~~~f~~~~~~---~~~ 230 (313)
T PLN00021 168 TSKGK--QTP--------PPVL-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAP-DGVNHAEFFNECKA---PAV 230 (313)
T ss_pred ccccc--CCC--------Cccc-ccCc--ccccCCCCeEEEecCCCcccccccccccCC-CCCCHHHHHHhcCC---Cee
Confidence 22110 000 0000 1111 122367999999999763 222 12334778887754 478
Q ss_pred EEEeCCCCCcCCCcc----------------------cHHHHHHHHHHHHHHhcccCC
Q 002194 867 LVILPFESHGYAARE----------------------SIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 867 ~~~~~~~~H~~~~~~----------------------~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+.+.++++|.-.-.+ -++.+...+++||..++....
T Consensus 231 ~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 231 HFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 888899999642111 123344568999999986543
No 84
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.46 E-value=2.8e-12 Score=137.93 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=127.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|..+.....-+. ..|+||++||.+... ..| ...... ++++|.|+. .+..|+
T Consensus 13 ~~~~~~~~~~~g~~--------~~~~vv~~hG~~~~~-----------~~~----~~~~~~-l~~~~~vi~---~D~~G~ 65 (278)
T TIGR03056 13 VGPFHWHVQDMGPT--------AGPLLLLLHGTGAST-----------HSW----RDLMPP-LARSFRVVA---PDLPGH 65 (278)
T ss_pred ECCEEEEEEecCCC--------CCCeEEEEcCCCCCH-----------HHH----HHHHHH-HhhCcEEEe---ecCCCC
Confidence 36666664433211 147899999953110 111 122333 456799999 666788
Q ss_pred CCcccch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC----
Q 002194 727 GDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (954)
Q Consensus 727 G~~~~~~---~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---- 799 (954)
|.+..+. .......+|+.++++.+ +.+++.|+||||||.+++.++.+.|++++++|++++.......
T Consensus 66 G~S~~~~~~~~~~~~~~~~l~~~i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~ 139 (278)
T TIGR03056 66 GFTRAPFRFRFTLPSMAEDLSALCAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGT 139 (278)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCccccccccccc
Confidence 8775432 22344555555544432 2357899999999999999999999999999988764331100
Q ss_pred --C----------CC-------Ccccc--c-------hhhh--cHHHHH-----------------hcC---cccccCCC
Q 002194 800 --P----------FG-------FQNED--R-------TLWE--ATSTYV-----------------EMS---PFMSANKL 829 (954)
Q Consensus 800 --~----------~~-------~~~~~--~-------~~~~--~~~~~~-----------------~~s---p~~~~~~~ 829 (954)
+ +. ..... . ..+. ....+. .+. ....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 219 (278)
T TIGR03056 140 LFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRI 219 (278)
T ss_pred ccchhhHhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccC
Confidence 0 00 00000 0 0000 000000 000 11235668
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++|+|+++|++|..+| ....+++.+.+.. ++++.++++||.+. .+....+.+.|.+||+
T Consensus 220 ~~P~lii~g~~D~~vp--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 220 TIPLHLIAGEEDKAVP--PDESKRAATRVPT----ATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred CCCEEEEEeCCCcccC--HHHHHHHHHhccC----CeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 8999999999999998 7777777665532 47888999999875 5567788888888873
No 85
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.46 E-value=2.5e-10 Score=120.97 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCCCCceecCCCCEEEEEecC-----------CCCCccccccccceeeeeeecCCCCCCcceee-EeceEEEEccCCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRR-----------ALPPLEELARPEEKLAGLRIDGKCNTRSRMSF-YTGIGIHQLFPDGKL 176 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~g~~ 176 (954)
.++..++|++||++|+-+... +...+.++...--.+....+.+....+..... +..+-+++
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe------- 176 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE------- 176 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee-------
Confidence 367889999999999987654 22334444444444455555444433321111 12222221
Q ss_pred Cceeeeec-C-CCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC
Q 002194 177 GQEIEIQG-F-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN 254 (954)
Q Consensus 177 ~~~~~lt~-~-~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD 254 (954)
|++.+... + .+...+..+++||||++.+.+. ....++++|-.+|+..-.... .....+.+-.+.||||
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g---------sDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG---------SDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPD 246 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEec---------CCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCC
Confidence 33333321 1 1223788899999999988865 367899999887776544432 2234555779999999
Q ss_pred CeEEEEE
Q 002194 255 STLLVCT 261 (954)
Q Consensus 255 G~~l~~~ 261 (954)
++.++.+
T Consensus 247 s~~~~T~ 253 (603)
T KOG0318|consen 247 STQFLTV 253 (603)
T ss_pred CceEEEe
Confidence 9999977
No 86
>PRK10985 putative hydrolase; Provisional
Probab=99.45 E-value=2.1e-12 Score=141.39 Aligned_cols=228 Identities=17% Similarity=0.088 Sum_probs=136.8
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+...||..+.......+. .+.+.|+||++||.+.. ....+....+..|+++||.|+..++
T Consensus 35 ~~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~d~-- 95 (324)
T PRK10985 35 RLELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVMHF-- 95 (324)
T ss_pred EEECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEEeC--
Confidence 3556788766544321111 12236899999996311 0111222356678899999999555
Q ss_pred CCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--ccEEEEeccCCCCCC
Q 002194 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTL 798 (954)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~~~~~ 798 (954)
+|+|.+.. ...+....++|+..+++++.++. ...+++++||||||.+++.+++++++. ++++|++++.++...
T Consensus 96 -rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~ 172 (324)
T PRK10985 96 -RGCSGEPNRLHRIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA 172 (324)
T ss_pred -CCCCCCccCCcceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH
Confidence 55554321 11222235789999999998863 235799999999999988888876543 888888887755210
Q ss_pred CC------C--CC-------------------cc---cc-------chh-------------hh-cHHHHHhcCcccccC
Q 002194 799 TP------F--GF-------------------QN---ED-------RTL-------------WE-ATSTYVEMSPFMSAN 827 (954)
Q Consensus 799 ~~------~--~~-------------------~~---~~-------~~~-------------~~-~~~~~~~~sp~~~~~ 827 (954)
.. + .+ .. .. ... +. ..+.|...+....+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~ 252 (324)
T PRK10985 173 CSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLN 252 (324)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHh
Confidence 00 0 00 00 00 000 00 112333445556678
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcc----cHHHHHHHHHHHHHHhc
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMHVLWETDRWLQKYC 898 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~----~~~~~~~~i~~fl~~~l 898 (954)
++++|+|+|+|++|.+++ ......+.+ ...++++++++++||...... ...-.-+.+.+||+.++
T Consensus 253 ~i~~P~lii~g~~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMT--HEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CCCCCEEEEecCCCCCCC--hhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 889999999999999987 655444322 223578889999999743211 11123345788887664
No 87
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=1.5e-12 Score=132.11 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=77.5
Q ss_pred ceEEEeccC-c-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCC
Q 002194 367 QVGVWTTDG-I-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQ 444 (954)
Q Consensus 367 ~l~l~d~~g-~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (954)
++++|+... + -+.+++.+ ..-+..+.|||||+.|+-. +-...|-+|+. .+
T Consensus 347 tlflW~p~~~kkpi~rmtgH-------------q~lVn~V~fSPd~r~IASa-------------SFDkSVkLW~g--~t 398 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGH-------------QALVNHVSFSPDGRYIASA-------------SFDKSVKLWDG--RT 398 (480)
T ss_pred eEEEecccccccchhhhhch-------------hhheeeEEECCCccEEEEe-------------ecccceeeeeC--CC
Confidence 899997652 2 22333332 2445789999999977765 33446777874 34
Q ss_pred CCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEE
Q 002194 445 GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 445 g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l 524 (954)
|.....+..+-..+..++||.|.|.|+..+.+.+ ..+|.+.... ...-..++...+|. +-|||||..+
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--LKvw~V~tkK----l~~DLpGh~DEVf~------vDwspDG~rV 466 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST--LKVWDVRTKK----LKQDLPGHADEVFA------VDWSPDGQRV 466 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCce--EEEEEeeeee----ecccCCCCCceEEE------EEecCCCcee
Confidence 4444445556667888999999998888766554 4555554322 11112233445555 7899999988
Q ss_pred EEEE
Q 002194 525 IAKI 528 (954)
Q Consensus 525 ~~~~ 528 (954)
+-..
T Consensus 467 ~sgg 470 (480)
T KOG0271|consen 467 ASGG 470 (480)
T ss_pred ecCC
Confidence 7654
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.45 E-value=2.4e-11 Score=130.18 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=165.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..+.|+|||+.|++...+ +.+++|++.. + .....+.. ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~---------------------------------g~i~i~~~~~-~--~~~~~~~~--~~~ 52 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGD---------------------------------GTIKVWDLET-G--ELLRTLKG--HTG 52 (289)
T ss_pred CEEEEEEcCCCCEEEEeecC---------------------------------cEEEEEEeeC-C--CcEEEEec--CCc
Confidence 56789999999999988754 4789999853 1 12233332 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|+|+++.|++... ...|++++.++++.......... .+..+.|+++++.++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~------- 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS---------DKTIRLWDLETGECVRTLTGHTS----YVSSVAFSPDGRILSSSS------- 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC---------CCeEEEEEcCcccceEEEeccCC----cEEEEEEcCCCCEEEEec-------
Confidence 5668999999988888542 56788888877543322222221 166889999988777651
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|..+++ +++.. .+... ..+..+.|+|+++.|
T Consensus 113 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 113 ------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred ------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence 1235777777 55433 33323 567889999998888
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..... +.+.+||+..++. ..+... ...+..+.|+||++.+++.
T Consensus 151 ~~~~~~-------------~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~--------- 195 (289)
T cd00200 151 ASSSQD-------------GTIKLWDLRTGKCVATLTGH-------------TGEVNSVAFSPDGEKLLSS--------- 195 (289)
T ss_pred EEEcCC-------------CcEEEEEccccccceeEecC-------------ccccceEEECCCcCEEEEe---------
Confidence 776522 3799999985432 222221 1234678999999877776
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 505 (954)
...+.+.+|+. ..+.....+......+..+.|+|++..++... .+ ..|++++..++ ............
T Consensus 196 ----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~---~~i~i~~~~~~--~~~~~~~~~~~~ 263 (289)
T cd00200 196 ----SSDGTIKLWDL--STGKCLGTLRGHENGVNSVAFSPDGYLLASGS-ED---GTIRVWDLRTG--ECVQTLSGHTNS 263 (289)
T ss_pred ----cCCCcEEEEEC--CCCceecchhhcCCceEEEEEcCCCcEEEEEc-CC---CcEEEEEcCCc--eeEEEccccCCc
Confidence 23557888886 22223333334555678899999966665543 22 24666666553 222222222222
Q ss_pred ccCCCCCCCeeeccCCcEEEEEE
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.. +.|+|+|+.++...
T Consensus 264 i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 264 VTS------LAWSPDGKRLASGS 280 (289)
T ss_pred EEE------EEECCCCCEEEEec
Confidence 222 78999988877665
No 89
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.45 E-value=5.8e-12 Score=135.17 Aligned_cols=211 Identities=14% Similarity=0.099 Sum_probs=133.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.+++.+.... + + + .|.||++||..... ..| ...... .+.+|.|++ .|..|+
T Consensus 9 ~~~~~~~~~~~~~-~--~-~---~~plvllHG~~~~~-----------~~w----~~~~~~-L~~~~~vi~---~Dl~G~ 62 (276)
T TIGR02240 9 LDGQSIRTAVRPG-K--E-G---LTPLLIFNGIGANL-----------ELV----FPFIEA-LDPDLEVIA---FDVPGV 62 (276)
T ss_pred cCCcEEEEEEecC-C--C-C---CCcEEEEeCCCcch-----------HHH----HHHHHH-hccCceEEE---ECCCCC
Confidence 4777777655421 1 1 1 35688999953110 011 122323 346799999 677788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC------
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~------ 798 (954)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 136 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPK 136 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchh
Confidence 8875432 22455566766666665 335799999999999999999999999999999987542110
Q ss_pred -----CC-CCCccc-----------------cchhhhc-H---------HHHH------hcCcccccCCCCCCEEEEEeC
Q 002194 799 -----TP-FGFQNE-----------------DRTLWEA-T---------STYV------EMSPFMSANKLKKPILLVHGE 839 (954)
Q Consensus 799 -----~~-~~~~~~-----------------~~~~~~~-~---------~~~~------~~sp~~~~~~~~~P~Lii~G~ 839 (954)
.. ..+... ....... . ..+. .......+.++++|+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 216 (276)
T TIGR02240 137 VLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGD 216 (276)
T ss_pred HHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeC
Confidence 00 000000 0000000 0 0000 011123357889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+|..+| +..++++.+.+.. .+++++++ ||... .+....+.+.+.+|+++.
T Consensus 217 ~D~~v~--~~~~~~l~~~~~~----~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 217 DDPIIP--LINMRLLAWRIPN----AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred CCCcCC--HHHHHHHHHhCCC----CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHh
Confidence 999998 8888888776643 47777886 99864 567788899999999875
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.45 E-value=5.2e-11 Score=129.54 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=145.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
...++|||||+.++.+... + ..|++|++.+ ++.... ++.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~----------------------~----------~~v~~~d~~~----~~~~~~--~~~~~~ 74 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD----------------------S----------DTIQVIDLAT----GEVIGT--LPSGPD 74 (300)
T ss_pred CCceEECCCCCEEEEEECC----------------------C----------CeEEEEECCC----CcEEEe--ccCCCC
Confidence 4578999999987655431 0 3688999743 332221 222234
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
.....|+|||+.++.+.. ....|+++|+.+++.......... ...+.|+|||+.+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~------- 134 (300)
T TIGR03866 75 PELFALHPNGKILYIANE--------DDNLVTVIDIETRKVLAEIPVGVE-----PEGMAVSPDGKIVVNTSE------- 134 (300)
T ss_pred ccEEEECCCCCEEEEEcC--------CCCeEEEEECCCCeEEeEeeCCCC-----cceEEECCCCCEEEEEec-------
Confidence 567899999997766431 234799999887654332221211 457899999999887611
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCCccccccccCCCCcEEEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....++.++. +++... +........++|+|||++|++
T Consensus 135 -----------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 135 -----------------------------------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred -----------------------------------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEE
Confidence 0112344565 443322 222234456789999999987
Q ss_pred EeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
.... .+.+.+||+++++. +.+.... ....+ .......+.|+|||+.++...
T Consensus 174 ~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~~s~dg~~~~~~~---------- 225 (300)
T TIGR03866 174 SSEI------------GGTVSVIDVATRKVIKKITFEI-PGVHP-----EAVQPVGIKLTKDGKTAFVAL---------- 225 (300)
T ss_pred EcCC------------CCEEEEEEcCcceeeeeeeecc-ccccc-----ccCCccceEECCCCCEEEEEc----------
Confidence 6532 23799999986543 4333211 00000 001123578999999754431
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
...+.+.+|+. .+++..........+..++|+|||++|+.+...+ ..|.++|+.++
T Consensus 226 --~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~i~v~d~~~~ 281 (300)
T TIGR03866 226 --GPANRVAVVDA---KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS---NDVSVIDVAAL 281 (300)
T ss_pred --CCCCeEEEEEC---CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC---CeEEEEECCCC
Confidence 12346888886 4444433323344577899999999987764333 35888888875
No 91
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.44 E-value=9.6e-12 Score=127.70 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=133.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh----hHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR----FVEQLVACAEA 745 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~ 745 (954)
-|+|+++||.|.. |..+. .....|+++||.|++ .|.+|||.+..+.. .......|+..
T Consensus 44 gP~illlHGfPe~--------------wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPES--------------WYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCcc--------------chhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 7999999998632 22222 245578999999999 88889999987654 24456777777
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC--------C-------CCCCCCCccc----
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------R-------TLTPFGFQNE---- 806 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~--------~-------~~~~~~~~~~---- 806 (954)
.++.|- -+|+.++||+||+.+|..++..+|+++++.|+.+..+. . .+....++..
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 777763 46999999999999999999999999999999875432 0 0000000000
Q ss_pred -------------------------------cchh---hhcH-------------------HHHHhcCc--ccccCCCCC
Q 002194 807 -------------------------------DRTL---WEAT-------------------STYVEMSP--FMSANKLKK 831 (954)
Q Consensus 807 -------------------------------~~~~---~~~~-------------------~~~~~~sp--~~~~~~~~~ 831 (954)
.... |++. +++..+.+ .....+++.
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 0001 1111 11122221 234466789
Q ss_pred CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 832 P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
|++++.|++|.+.+ +..-.+.+++.--. ..+.+++++.||.. ..++.+++.+.|++||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44222233322111 23678899999987 4788899999999999875
No 92
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.44 E-value=6.1e-12 Score=133.44 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=123.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~ 748 (954)
.|.||++||.+... ..| ...+..| +++|.|+. .+.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~iv~lhG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGSL-----------DNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCch-----------hHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58899999963211 111 1123233 46899999 6667888775432 234566778888777
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC-CCCCCC-------------CCCCccc--cchh--
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNRTLT-------------PFGFQNE--DRTL-- 810 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~~~~~~-------------~~~~~~~--~~~~-- 810 (954)
++ ..+++.++||||||.+++.++.++|++++++|++++. ...... ....... ....
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 65 3357999999999999999999999999999987532 111000 0000000 0000
Q ss_pred --------------------hh--cH---HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002194 811 --------------------WE--AT---STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (954)
Q Consensus 811 --------------------~~--~~---~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (954)
|. .. ..+........+.++++|+|+++|++|..++ ....+.+.+.+. ++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQFP----QA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhCC----Cc
Confidence 00 00 0111111122345678999999999999987 666666655443 35
Q ss_pred EEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
++.+++++||... .+....+.+.+.+||.+
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8889999999764 56677888899999875
No 93
>PLN02872 triacylglycerol lipase
Probab=99.44 E-value=4.9e-12 Score=139.83 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=152.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
..++.|+..+++.||..|...-+.+.. ......+.|.|+++||....+..+. ...+ ....+..|+++||.
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~-~~~~~~~~~~Vll~HGl~~ss~~w~---~~~~------~~sla~~La~~Gyd 109 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRN-PRLGSQRGPPVLLQHGLFMAGDAWF---LNSP------EQSLGFILADHGFD 109 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCC-CCCCCCCCCeEEEeCccccccccee---ecCc------ccchHHHHHhCCCC
Confidence 357889999999999988877664322 1111123578999999643222110 0000 11234568899999
Q ss_pred EEEcCCCCCCC-CCCcc---cc-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---
Q 002194 715 ILGGPTTPIIG-EGDEE---AN-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--- 782 (954)
Q Consensus 715 V~~~~~~~~~G-~G~~~---~~-----~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--- 782 (954)
|+.++.+|... +|... .+ -.+......|+.++++++.+.. .+++.++|||+||.+++.++ ..|+
T Consensus 110 V~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~ 185 (395)
T PLN02872 110 VWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVE 185 (395)
T ss_pred cccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHH
Confidence 99966655421 22111 11 1233344589999999998652 36899999999999998555 5565
Q ss_pred cccEEEEeccCCCCCC-----------------------CCCCCcc-----------c-------------------c--
Q 002194 783 LFCCGIARSGAYNRTL-----------------------TPFGFQN-----------E-------------------D-- 807 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~-----------------------~~~~~~~-----------~-------------------~-- 807 (954)
+++++++.+|+..... ..+.... . +
T Consensus 186 ~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~ 265 (395)
T PLN02872 186 MVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNAS 265 (395)
T ss_pred HHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchh
Confidence 4666666666421000 0000000 0 0
Q ss_pred -----------ch------hh-----------------hcHHHHHh-cCcccccCCC--CCCEEEEEeCCCCCCCCchHH
Q 002194 808 -----------RT------LW-----------------EATSTYVE-MSPFMSANKL--KKPILLVHGEEDNNSGTLTMQ 850 (954)
Q Consensus 808 -----------~~------~~-----------------~~~~~~~~-~sp~~~~~~~--~~P~Lii~G~~D~~v~~~~~~ 850 (954)
++ -| ++...|.. ..|...+.++ +.|+++++|++|..++ +..
T Consensus 266 ~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~--~~d 343 (395)
T PLN02872 266 RIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD--VTD 343 (395)
T ss_pred hhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--HHH
Confidence 00 00 01111211 1344567777 4799999999999998 888
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCc--CCCcccHHHHHHHHHHHHHHhcc
Q 002194 851 SDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
..++.+.+... .+++.+++.+|. +...+..+.+++.|++||++++.
T Consensus 344 v~~l~~~Lp~~---~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 344 VEHTLAELPSK---PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred HHHHHHHCCCc---cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 88888877542 477889999996 44566778899999999998764
No 94
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.44 E-value=6.8e-12 Score=136.07 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=122.5
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---------hhHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVA 741 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~ 741 (954)
|.||++||.+... ..|. .....|+.+ |.|++ .|..|+|.+.... .......+
T Consensus 30 ~~vlllHG~~~~~-----------~~w~----~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHWR----KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHHH----HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 6799999964221 1121 234455555 69999 6777888875432 12344455
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC---CCC-CCC------cc---c--
Q 002194 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTP-FGF------QN---E-- 806 (954)
Q Consensus 742 D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~-~~~------~~---~-- 806 (954)
|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|++++..... ... ... .. .
T Consensus 91 ~l~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV------VGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh------cCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 555555544 23589999999999999999999999999999998643110 000 000 00 0
Q ss_pred c--------------chh----hhc-----H----------------HHHHhc---C----cccccCCCCCCEEEEEeCC
Q 002194 807 D--------------RTL----WEA-----T----------------STYVEM---S----PFMSANKLKKPILLVHGEE 840 (954)
Q Consensus 807 ~--------------~~~----~~~-----~----------------~~~~~~---s----p~~~~~~~~~P~Lii~G~~ 840 (954)
. ... +.. . ..+.+. . ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 000000 0 1123567889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
|..+| .+.++.+.+.. ...++++++++||... .+..+.+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYANFD----AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHhcC----CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 77766643322 2358889999999864 677888999999998763
No 95
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.43 E-value=1.2e-12 Score=138.01 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=119.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av 747 (954)
.|+||++||..... ..| ...+. .+++||.|++ .+..|+|.+.... .......+|+.+.+
T Consensus 13 ~~~li~~hg~~~~~-----------~~~----~~~~~-~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTDL-----------RMW----DPVLP-ALTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccch-----------hhH----HHHHH-HhhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999952110 111 12233 3457999999 6666777764332 12344455555554
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-CC-------------------------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF------------------------- 801 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~~------------------------- 801 (954)
+.+ +.+++.++|||+||.+++.++.++|++++++|+.++....... .+
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 443 3468999999999999999999999999999888754321110 00
Q ss_pred -CCccccch---hhh------cH-------HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002194 802 -GFQNEDRT---LWE------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (954)
Q Consensus 802 -~~~~~~~~---~~~------~~-------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (954)
.+...... .+. .. ..+...+....+.++++|+|+++|++|..+| .+....+.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 00000000 000 00 0011112223456788999999999999998 777777766653 3
Q ss_pred EEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 865 CRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.+++++++++|... .+....+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 58889999999874 455667777777776
No 96
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.43 E-value=9.4e-12 Score=139.89 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=134.4
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH---HCCcEEEEc
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL---ARGFAILGG 718 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~G~~V~~~ 718 (954)
..|.+..|.+++.....|++. . +.|.||++||.+.... .| .......|+ +++|.|++
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~--~---~k~~VVLlHG~~~s~~-----------~W---~~~~~~~L~~~~~~~yrVia- 237 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDN--K---AKEDVLFIHGFISSSA-----------FW---TETLFPNFSDAAKSTYRLFA- 237 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCC--C---CCCeEEEECCCCccHH-----------HH---HHHHHHHHHHHhhCCCEEEE-
Confidence 345555678898888887641 1 2367899999642110 11 111122333 47999999
Q ss_pred CCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 719 PTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
.|..|+|.+..+.. ......+|+. ..+.+. .+.+++.++||||||.+++.++.++|++++++|++++...
T Consensus 238 --~Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 238 --VDLLGFGRSPKPADSLYTLREHLEMIE---RSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred --ECCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 66678888754321 1223333332 123333 2345899999999999999999999999999999986432
Q ss_pred CCCC---------------C-C---CCcc------c--cc----------hhhhcH----------HHHH----hc--Cc
Q 002194 796 RTLT---------------P-F---GFQN------E--DR----------TLWEAT----------STYV----EM--SP 822 (954)
Q Consensus 796 ~~~~---------------~-~---~~~~------~--~~----------~~~~~~----------~~~~----~~--sp 822 (954)
.... . + .+.. + .. ..|+.. ..+. .. .+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 390 (481)
T PLN03087 311 PVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNA 390 (481)
T ss_pred ccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchh
Confidence 1100 0 0 0000 0 00 001100 0000 00 00
Q ss_pred c--------------------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc
Q 002194 823 F--------------------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES 882 (954)
Q Consensus 823 ~--------------------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 882 (954)
. ....++++|+|++||++|..+| ++.++.+.+.+.. .+++++|++||.....+.
T Consensus 391 ~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~ 464 (481)
T PLN03087 391 AWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVPR----ARVKVIDDKDHITIVVGR 464 (481)
T ss_pred hHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCCC----CEEEEeCCCCCcchhhcC
Confidence 0 0112588999999999999998 8888888776643 589999999998654466
Q ss_pred HHHHHHHHHHHHHH
Q 002194 883 IMHVLWETDRWLQK 896 (954)
Q Consensus 883 ~~~~~~~i~~fl~~ 896 (954)
...+.+.+.+|...
T Consensus 465 p~~fa~~L~~F~~~ 478 (481)
T PLN03087 465 QKEFARELEEIWRR 478 (481)
T ss_pred HHHHHHHHHHHhhc
Confidence 67788888887643
No 97
>PLN02965 Probable pheophorbidase
Probab=99.41 E-value=5.1e-12 Score=133.83 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred EEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHHHH
Q 002194 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVE 748 (954)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av~ 748 (954)
+||++||..... ..| ......|++.||.|++ .+.+|+|.+.... .......+|+.+.++
T Consensus 5 ~vvllHG~~~~~-----------~~w----~~~~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~ 66 (255)
T PLN02965 5 HFVFVHGASHGA-----------WCW----YKLATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALLS 66 (255)
T ss_pred EEEEECCCCCCc-----------CcH----HHHHHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 489999963211 111 1344567788999999 6777888875432 224555666666665
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC---CCCCC------------CCCC--ccc---c-
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY---NRTLT------------PFGF--QNE---D- 807 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~---~~~~~------------~~~~--~~~---~- 807 (954)
.+ + . .+++.++||||||.+++.++.++|++++++|.+++.. ..... .+.+ ... .
T Consensus 67 ~l---~-~-~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T PLN02965 67 DL---P-P-DHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPP 141 (255)
T ss_pred hc---C-C-CCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCc
Confidence 53 1 1 1489999999999999999999999999999887641 10000 0000 000 0
Q ss_pred ------chhh-----hc--HH--HH--Hhc--Ccc----------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHH
Q 002194 808 ------RTLW-----EA--TS--TY--VEM--SPF----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNAL 858 (954)
Q Consensus 808 ------~~~~-----~~--~~--~~--~~~--sp~----------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l 858 (954)
.... .. .+ .+ ... .+. ..+.++++|+|+++|++|..+| +..++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~~ 219 (255)
T PLN02965 142 TGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVENW 219 (255)
T ss_pred chhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHhC
Confidence 0000 00 00 00 000 000 1223588999999999999998 87777777655
Q ss_pred HhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 859 KGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 859 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.. .++++++++||... .+..+.+.+.+.+|++.
T Consensus 220 ~~----a~~~~i~~~GH~~~-~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 220 PP----AQTYVLEDSDHSAF-FSVPTTLFQYLLQAVSS 252 (255)
T ss_pred Cc----ceEEEecCCCCchh-hcCHHHHHHHHHHHHHH
Confidence 43 47889999999985 67778888888888765
No 98
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.41 E-value=1.6e-11 Score=136.44 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=122.1
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh---hHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAV 747 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av 747 (954)
|.||++||.+... ..| . .....| +.+|.|+. .|..|+|.+..+.. ......+|+.+.+
T Consensus 89 p~lvllHG~~~~~-----------~~w---~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~l 149 (360)
T PLN02679 89 PPVLLVHGFGASI-----------PHW---R-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDFL 149 (360)
T ss_pred CeEEEECCCCCCH-----------HHH---H-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHHH
Confidence 7789999964211 011 1 223333 46899999 67778888754321 2344455555555
Q ss_pred HHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCcccEEEEeccCCCCCC----CCCC------------C-------
Q 002194 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTL----TPFG------------F------- 803 (954)
Q Consensus 748 ~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~~~~~----~~~~------------~------- 803 (954)
+.+ ..+++.|+||||||.+++.+++ ++|++++++|++++...... ..+. +
T Consensus 150 ~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (360)
T PLN02679 150 EEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGI 223 (360)
T ss_pred HHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhh
Confidence 543 2358999999999999998887 46899999999886431100 0000 0
Q ss_pred -----ccc--cchh-------hhc---------------------HHHHHh-------cCcccccCCCCCCEEEEEeCCC
Q 002194 804 -----QNE--DRTL-------WEA---------------------TSTYVE-------MSPFMSANKLKKPILLVHGEED 841 (954)
Q Consensus 804 -----~~~--~~~~-------~~~---------------------~~~~~~-------~sp~~~~~~~~~P~Lii~G~~D 841 (954)
... .... +.. ...+.. .+....+.++++|+||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D 303 (360)
T PLN02679 224 ASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQD 303 (360)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCC
Confidence 000 0000 000 000110 0111345678899999999999
Q ss_pred CCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 842 NNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 842 ~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..+| +... .++++.+.+.-.+++++++|++||... .+..+.+.+.|.+||++
T Consensus 304 ~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 304 PFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 9988 6542 234455544434579999999999864 67788899999999975
No 99
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.41 E-value=1.9e-12 Score=131.33 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---------CCCCcccc--chh
Q 002194 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED--RTL 810 (954)
Q Consensus 742 D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---------~~~~~~~~--~~~ 810 (954)
-+..|++||.+++.+++++|+|+|.|.||-+|+.+++..| .++|+|+++|..-.... ++-+.... ...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4678999999999999999999999999999999999996 79999999874221000 00000000 000
Q ss_pred hhcH------HHHH------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc--EEEEEeCCCCCc
Q 002194 811 WEAT------STYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVILPFESHG 876 (954)
Q Consensus 811 ~~~~------~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~ 876 (954)
+... ..+. .....-.+.++++|+|+++|++|...|. ...+..+.++|+.++.+ ++++.||++||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS-~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPS-SEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-H-HHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred ecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccch-HHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 0000 0000 0011124667899999999999999871 34466788889998865 899999999998
Q ss_pred CCCc---------------------------ccHHHHHHHHHHHHHHhcc
Q 002194 877 YAAR---------------------------ESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 877 ~~~~---------------------------~~~~~~~~~i~~fl~~~l~ 899 (954)
+..+ .+.++.++++++||+++|.
T Consensus 163 i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 163 IEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp --STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6421 1346788899999999985
No 100
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.41 E-value=5.6e-12 Score=137.24 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=127.6
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.+...+|.+++...+-++ + .+.||++||++.... .......+..++|.|++ .+
T Consensus 8 ~~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~~----------------~~~~~~~~~~~~~~vi~---~D 60 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSGT----------------DPGCRRFFDPETYRIVL---FD 60 (306)
T ss_pred eEEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCCC----------------CHHHHhccCccCCEEEE---EC
Confidence 445557887775443211 1 345788999742211 01122234457899999 66
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC-----
Q 002194 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----- 797 (954)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~----- 797 (954)
..|+|.+............|+.+.+..+.+.- +.+++.++||||||.+++.++.++|++++++|+.++.....
T Consensus 61 ~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (306)
T TIGR01249 61 QRGCGKSTPHACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSW 138 (306)
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHH
Confidence 67888775432211122334444444444432 33579999999999999999999999999988876532100
Q ss_pred --------CCC-----------CCCc-------------ccc-------chh---hhc----------------H---HH
Q 002194 798 --------LTP-----------FGFQ-------------NED-------RTL---WEA----------------T---ST 816 (954)
Q Consensus 798 --------~~~-----------~~~~-------------~~~-------~~~---~~~----------------~---~~ 816 (954)
..+ .... ... ... |.. + ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T TIGR01249 139 FYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLA 218 (306)
T ss_pred HHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHH
Confidence 000 0000 000 000 000 0 00
Q ss_pred HHh-----------cC----cccccCCC-CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc
Q 002194 817 YVE-----------MS----PFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (954)
Q Consensus 817 ~~~-----------~s----p~~~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (954)
+.. .+ -...+.++ ++|+|++||++|..+| ...+.++++.+. ..++++++++||....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~----~~~~~~~~~~gH~~~~- 291 (306)
T TIGR01249 219 FARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFP----EAELKVTNNAGHSAFD- 291 (306)
T ss_pred HHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCC----CCEEEEECCCCCCCCC-
Confidence 000 00 01233456 5899999999999998 888888887754 3588899999999753
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 002194 881 ESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l 898 (954)
....+.+.+|+..+|
T Consensus 292 ---~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 292 ---PNNLAALVHALETYL 306 (306)
T ss_pred ---hHHHHHHHHHHHHhC
Confidence 345677788887764
No 101
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.41 E-value=1.3e-11 Score=136.94 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=122.8
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
..+..|+++||.|+.. +.+|.|.+............|+.++++++.++. ..+++.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~---D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLI---DWGYPDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEE---eCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCch
Confidence 4677899999999994 445556544333333334456889999998874 33589999999999999999999999
Q ss_pred cccEEEEeccCCCCCCCC-----C-------------C-Ccc-----------ccchhh----------hcHH---HHH-
Q 002194 783 LFCCGIARSGAYNRTLTP-----F-------------G-FQN-----------EDRTLW----------EATS---TYV- 818 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~~~~-----~-------------~-~~~-----------~~~~~~----------~~~~---~~~- 818 (954)
+++++|++++.++..... + + ... .....| .+.+ .|.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 999999999876632110 0 0 000 000000 0000 010
Q ss_pred --h--cC--c-----------------------------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC
Q 002194 819 --E--MS--P-----------------------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (954)
Q Consensus 819 --~--~s--p-----------------------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (954)
. .+ + ...+.++++|+|+++|++|..+| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01244678999999999999998 8888888887653 4
Q ss_pred cEEEEEeCCCCCcCC--CcccHHHHHHHHHHHHHHh
Q 002194 864 LCRLVILPFESHGYA--ARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~ 897 (954)
+++++++++ ||... ......+++..+.+||.++
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 578888885 77542 2234578889999999763
No 102
>PRK11071 esterase YqiA; Provisional
Probab=99.41 E-value=1.3e-11 Score=123.22 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=106.7
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
|.||++||.... +..|. .......+.+ .+|.|++++ ..|++ +++.+.++
T Consensus 2 p~illlHGf~ss-----------~~~~~--~~~~~~~l~~~~~~~~v~~~d---l~g~~-------------~~~~~~l~ 52 (190)
T PRK11071 2 STLLYLHGFNSS-----------PRSAK--ATLLKNWLAQHHPDIEMIVPQ---LPPYP-------------ADAAELLE 52 (190)
T ss_pred CeEEEECCCCCC-----------cchHH--HHHHHHHHHHhCCCCeEEeCC---CCCCH-------------HHHHHHHH
Confidence 679999995311 11111 0012233444 379999944 44542 12334444
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----C--CCCccccchhh--hcHHHHHh
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P--FGFQNEDRTLW--EATSTYVE 819 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~--~~~~~~~~~~~--~~~~~~~~ 819 (954)
.+.++. +.+++.++|+|+||++++.++.++|. + +|+++|..+.... . ..........+ ...+....
T Consensus 53 ~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 127 (190)
T PRK11071 53 SLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKV 127 (190)
T ss_pred HHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHh
Confidence 444442 23589999999999999999999973 3 4677776552100 0 00000001111 11122222
Q ss_pred cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 820 ~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
..+.. +. ...|++++||++|++|| +.++.++++. +++.+++|++|.+... +..++.+.+||.
T Consensus 128 ~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 128 MQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred cCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 33222 33 67789999999999999 9999999984 3556789999998543 667888888874
No 103
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.7e-10 Score=115.72 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=167.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|++.+ ..++...+.....-......+|+|++++|+.... .++.+...-|.+|.+.|....+-.....+-
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~----~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNE----PGEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEe----cCCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 4789999952 2233222211112236788899999998877764 234667778888887787765533222110
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
....++.++||+.|+.+... .+.|-++.+
T Consensus 90 --~p~yvsvd~~g~~vf~AnY~------------------------------------------------~g~v~v~p~~ 119 (346)
T COG2706 90 --PPCYVSVDEDGRFVFVANYH------------------------------------------------SGSVSVYPLQ 119 (346)
T ss_pred --CCeEEEECCCCCEEEEEEcc------------------------------------------------CceEEEEEcc
Confidence 02356788999988877211 112222222
Q ss_pred -CCceeEcCC---C-----------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCC
Q 002194 322 -DGTVKEIGP---P-----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (954)
Q Consensus 322 -~G~~~~l~~---~-----------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~ 386 (954)
+|.+..+.. . ...-...+.|||++|+....... .+++|+++.+..........
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D------------ri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD------------RIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc------------eEEEEEcccCcccccccccc
Confidence 332221110 0 11334678999999998875432 78999998554433332211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---------ccc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---------DLR 457 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---------~~~ 457 (954)
....|.|.+.|.|+|+ ++|.+.+. +..-.+|-++ +. .++.+.|... ...
T Consensus 188 ---------~~G~GPRHi~FHpn~k-~aY~v~EL---------~stV~v~~y~--~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---------KPGAGPRHIVFHPNGK-YAYLVNEL---------NSTVDVLEYN--PA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---------CCCCCcceEEEcCCCc-EEEEEecc---------CCEEEEEEEc--CC-CceEEEeeeeccCccccCCCCc
Confidence 1125789999999998 56665444 2222344444 22 4555544211 112
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcE
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (954)
...+..|+|||.|+.+ ++.-....+|.++.+++..+....+......... +.++++|++|+....
T Consensus 246 ~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~------F~i~~~g~~Liaa~q-------- 310 (346)
T COG2706 246 AAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD------FNINPSGRFLIAANQ-------- 310 (346)
T ss_pred eeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc------ceeCCCCCEEEEEcc--------
Confidence 3457889999987765 4443346677888887622111122221111111 568999999888763
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
+++.-.+|..|-++|+...+..
T Consensus 311 ----------~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 311 ----------KSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ----------CCCcEEEEEEcCCCceEEeccc
Confidence 2344568888999998776644
No 104
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.39 E-value=3e-11 Score=135.61 Aligned_cols=204 Identities=17% Similarity=0.127 Sum_probs=121.8
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhh---HHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~a 746 (954)
.|+||++||.+... ..| ......|+ ++|.|+. .+.+|+|.+..+... .....+.+.+.
T Consensus 105 ~p~vvllHG~~~~~-----------~~~----~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ-----------GFF----FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch-----------hHH----HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 58999999963210 011 12233444 4699999 666777877543211 11111122222
Q ss_pred H-HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-C-----------C-----------C
Q 002194 747 V-EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P-----------F-----------G 802 (954)
Q Consensus 747 v-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-~-----------~-----------~ 802 (954)
+ +++... +.+++.++||||||++++.++.++|++++++|+++|..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 2 333322 4468999999999999999999999999999988764211000 0 0 0
Q ss_pred Cccc--------------cchh--------------hhcHHHH---H-----------------------hcCcc-cccC
Q 002194 803 FQNE--------------DRTL--------------WEATSTY---V-----------------------EMSPF-MSAN 827 (954)
Q Consensus 803 ~~~~--------------~~~~--------------~~~~~~~---~-----------------------~~sp~-~~~~ 827 (954)
+... .... .+..+.+ . ...++ ..+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 0000 0000 0000000 0 00111 2356
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
++++|+|+++|++|..++ ....++.+.+ +..+++++++++||... .++...+.+.+.+|++.++....
T Consensus 323 ~I~vP~liI~G~~D~i~~---~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMNY---EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred cCCCCEEEEEeCCCCCCc---HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhccCCc
Confidence 788999999999998653 5555554433 34478999999999864 67788899999999999986543
No 105
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.39 E-value=2.4e-11 Score=116.85 Aligned_cols=241 Identities=14% Similarity=0.174 Sum_probs=160.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC-
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~- 188 (954)
.+..+.++||++.||..... .|+++|+++ +...++..+...
T Consensus 42 qVNrLeiTpdk~~LAaa~~q----------------------------------hvRlyD~~S----~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQ----------------------------------HVRLYDLNS----NNPNPVATFEGHT 83 (311)
T ss_pred ceeeEEEcCCcchhhhccCC----------------------------------eeEEEEccC----CCCCceeEEeccC
Confidence 56788999999999988874 899999976 333333323221
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
.++..+.|--||+|++..+ .+|...|| |+..-...++...... +..+.-.|+-.-|+..
T Consensus 84 kNVtaVgF~~dgrWMyTgs-------eDgt~kIW--dlR~~~~qR~~~~~sp-----Vn~vvlhpnQteLis~------- 142 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGS-------EDGTVKIW--DLRSLSCQRNYQHNSP-----VNTVVLHPNQTELISG------- 142 (311)
T ss_pred CceEEEEEeecCeEEEecC-------CCceEEEE--eccCcccchhccCCCC-----cceEEecCCcceEEee-------
Confidence 3788999999999998733 44455555 5555555555544432 6677777776556543
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--ceeEcCCC-ccccccccCCCCc
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~~~~l~~~-~~~~~~~~SpDGk 344 (954)
+ ..+.|+++|+ .. ....+.+. ..+.+.+..|||+
T Consensus 143 ----------------d--------------------------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 143 ----------------D--------------------------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred ----------------c--------------------------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 0 3356888888 43 23334444 6788999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
.++...+.+ +.|+|++-+.+ ..++...+ ..........+|||+|.|+-.
T Consensus 181 ml~a~nnkG-------------~cyvW~l~~~~~~s~l~P~~k~~----------ah~~~il~C~lSPd~k~lat~---- 233 (311)
T KOG0315|consen 181 MLAAANNKG-------------NCYVWRLLNHQTASELEPVHKFQ----------AHNGHILRCLLSPDVKYLATC---- 233 (311)
T ss_pred EEEEecCCc-------------cEEEEEccCCCccccceEhhhee----------cccceEEEEEECCCCcEEEee----
Confidence 998877543 89999987532 23333322 222334567899999987765
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+....+++|+.|.+ =....+++.+..-+...+||-||++|+.++.+.. .+||-+....
T Consensus 234 ---------ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--~rlW~~~~~k 291 (311)
T KOG0315|consen 234 ---------SSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--ARLWDLSAGK 291 (311)
T ss_pred ---------cCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCc--eeecccccCc
Confidence 44557788875222 0122455667777888999999999999887743 7788766543
No 106
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.38 E-value=2.3e-11 Score=132.05 Aligned_cols=210 Identities=13% Similarity=0.111 Sum_probs=130.1
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (954)
.+|.++....+- . .|.||++||.+... ..| ...+..|++++ .|++ .|..|+
T Consensus 14 ~~g~~i~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~-~via---~D~~G~ 64 (295)
T PRK03592 14 VLGSRMAYIETG--------E--GDPIVFLHGNPTSS-----------YLW----RNIIPHLAGLG-RCLA---PDLIGM 64 (295)
T ss_pred ECCEEEEEEEeC--------C--CCEEEEECCCCCCH-----------HHH----HHHHHHHhhCC-EEEE---EcCCCC
Confidence 377777654431 1 36788999964211 111 13455666665 8999 666788
Q ss_pred CCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC---CC-
Q 002194 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---TP- 800 (954)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~---~~- 800 (954)
|.+..+. .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|++++...... ..
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~ 138 (295)
T PRK03592 65 GASDKPDIDYTFADHARYLDAWFDAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPP 138 (295)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcch
Confidence 8875432 22445556666655554 236899999999999999999999999999999886422100 00
Q ss_pred --------CCCcc--c-----c----chhh----------hcHHHHH-----------------hcCc------------
Q 002194 801 --------FGFQN--E-----D----RTLW----------EATSTYV-----------------EMSP------------ 822 (954)
Q Consensus 801 --------~~~~~--~-----~----~~~~----------~~~~~~~-----------------~~sp------------ 822 (954)
+.... . . ...+ +....+. ...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (295)
T PRK03592 139 AVRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVE 218 (295)
T ss_pred hHHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhh
Confidence 00000 0 0 0000 0000000 0000
Q ss_pred --ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 823 --~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...+.++++|+|+|||++|..++ +....++...+.. +.++.+++++||... .+..+.+.+.+.+|+.+.
T Consensus 219 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 219 EYAQWLATSDVPKLLINAEPGAILT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred HhHHHhccCCCCeEEEeccCCcccC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHh
Confidence 01235678999999999999985 4555555444332 358889999999985 567788999999999875
No 107
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.38 E-value=1.3e-11 Score=127.25 Aligned_cols=269 Identities=16% Similarity=0.161 Sum_probs=166.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecC--CeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--G~~l~~~~~~~~~ 267 (954)
.+....||+||+.|+..+ -+|...||-++ .....+...+.... +..+.|+|. +.-++..
T Consensus 177 Pis~~~fS~ds~~laT~s-------wsG~~kvW~~~--~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~------ 237 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGS-------WSGLVKVWSVP--QCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATA------ 237 (459)
T ss_pred cceeeEeecCCCeEEEee-------cCCceeEeecC--CcceeEEEeccccc----eeeEEEccCCCccceeee------
Confidence 677889999999999876 44566777554 44555555544433 778999998 4455544
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEE
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
+.+ +...||.++-.-.+..++.. ..+..++|.|+|++|
T Consensus 238 ---------------s~D--------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 238 ---------------SAD--------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFL 276 (459)
T ss_pred ---------------ccC--------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCCcee
Confidence 111 33445555543345566666 788899999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
+..+-+ ..-.+||+.++..-.+- .++..++.+++|.|||..++-- |
T Consensus 277 ~TasfD-------------~tWRlWD~~tk~ElL~Q------------EGHs~~v~~iaf~~DGSL~~tG------G--- 322 (459)
T KOG0272|consen 277 GTASFD-------------STWRLWDLETKSELLLQ------------EGHSKGVFSIAFQPDGSLAATG------G--- 322 (459)
T ss_pred eecccc-------------cchhhcccccchhhHhh------------cccccccceeEecCCCceeecc------C---
Confidence 998844 35568999865422111 1445678899999999843321 0
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
.+... .+||+ .+|..+-.|..+...+.++.|||+|..|+..+.++. .+||.+..... .-.+ ..+...+
T Consensus 323 --lD~~~--RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt--~kVWDLR~r~~---ly~i-pAH~nlV 390 (459)
T KOG0272|consen 323 --LDSLG--RVWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT--CKVWDLRMRSE---LYTI-PAHSNLV 390 (459)
T ss_pred --ccchh--heeec--ccCcEEEEecccccceeeEeECCCceEEeecCCCCc--EEEeeeccccc---ceec-ccccchh
Confidence 01222 45664 356666666777788899999999999999887765 67887765442 1111 2222222
Q ss_pred cCCCCCCCeeecc-CCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccC
Q 002194 507 YSDPGSPMMRRTS-TGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSD 585 (954)
Q Consensus 507 ~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 585 (954)
.. +.|+| .|.+|+...- ...+.+|...+...-+...+-.. .+++
T Consensus 391 S~------Vk~~p~~g~fL~Tasy---------------------D~t~kiWs~~~~~~~ksLaGHe~-------kV~s- 435 (459)
T KOG0272|consen 391 SQ------VKYSPQEGYFLVTASY---------------------DNTVKIWSTRTWSPLKSLAGHEG-------KVIS- 435 (459)
T ss_pred hh------eEecccCCeEEEEccc---------------------CcceeeecCCCcccchhhcCCcc-------ceEE-
Confidence 22 78998 5555555441 11266666665554333322211 1111
Q ss_pred CccccccccCCEEEEEE
Q 002194 586 QTEGDLYLNQLKILTSK 602 (954)
Q Consensus 586 ~~~~~~s~dg~~l~~~~ 602 (954)
.++|+|+..++...
T Consensus 436 ---~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 436 ---LDISPDSQAIATSS 449 (459)
T ss_pred ---EEeccCCceEEEec
Confidence 46888888776433
No 108
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.38 E-value=7.8e-12 Score=131.60 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=115.5
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHH-HHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA-VEE 749 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~a-v~~ 749 (954)
|+||++||..... ..| ......|+ +||.|+. .+..|+|.+..+.......++++... +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~~----~~~~~~L~-~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------ADW----QALIELLG-PHFRCLA---IDLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hhH----HHHHHHhc-ccCeEEE---EcCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 6789999953211 111 13344555 8999999 56667777754322122233333333 444
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC-----CC--------Cccc----------
Q 002194 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FG--------FQNE---------- 806 (954)
Q Consensus 750 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~-----~~--------~~~~---------- 806 (954)
+.+. .+.+++.++|||+||.+++.++.++|+.+++++++++........ .. +...
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4443 245689999999999999999999999999999988653311000 00 0000
Q ss_pred ----cch---hhhc-----------------HHHHH------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 807 ----DRT---LWEA-----------------TSTYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 807 ----~~~---~~~~-----------------~~~~~------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
... .... ...+. ..+....+.++++|+|+++|++|..++ ...++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~~~--- 214 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIAKE--- 214 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHHHH---
Confidence 000 0000 00000 011223456789999999999997642 33333
Q ss_pred HHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.....+++++.+|++||... .++.+.+...|.+||
T Consensus 215 -~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 215 -MQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred -HHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 333334578889999999874 455667777788776
No 109
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.37 E-value=1.1e-10 Score=112.50 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=173.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|++|...+ |.-.+--.+++ ..++....+||++.||-. +..+|.++|+.++...++......
T Consensus 20 hTIRfWqa~t----G~C~rTiqh~d-sqVNrLeiTpdk~~LAaa----------~~qhvRlyD~~S~np~Pv~t~e~h-- 82 (311)
T KOG0315|consen 20 HTIRFWQALT----GICSRTIQHPD-SQVNRLEITPDKKDLAAA----------GNQHVRLYDLNSNNPNPVATFEGH-- 82 (311)
T ss_pred ceeeeeehhc----CeEEEEEecCc-cceeeEEEcCCcchhhhc----------cCCeeEEEEccCCCCCceeEEecc--
Confidence 5899999865 44333222333 378889999999999875 377888899988877665443321
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~ 322 (954)
+..+..+.|--||++.+..+ .+ ++-.||-+. .
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs---------------------eD--------------------------gt~kIWdlR-~ 114 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS---------------------ED--------------------------GTVKIWDLR-S 114 (311)
T ss_pred CCceEEEEEeecCeEEEecC---------------------CC--------------------------ceEEEEecc-C
Confidence 22267889999999999651 11 333344333 3
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccC
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g 400 (954)
-...++... ..+..+.+.|+-..|+.... .++|++||+..... .++...+ + ..
T Consensus 115 ~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~---~---------~~ 169 (311)
T KOG0315|consen 115 LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPED---D---------TS 169 (311)
T ss_pred cccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCC---C---------cc
Confidence 333444433 67788889998776665542 23899999986533 2333211 1 23
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc---eEE---eecccccCceeeccCCceEEEEE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EIL---HKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l---~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+++++..|||+.++.. ..++..|+|++ ...... .++ ..+.+.+-...+|||+++|+..+
T Consensus 170 i~sl~v~~dgsml~a~-------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAA-------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred eeeEEEcCCCcEEEEe-------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 4678899999987666 44678999996 332222 223 23445556679999999999988
Q ss_pred eccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFL 554 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 554 (954)
.+++ ..||..+.- .+.....+....-+.. -.||.||++|+-... ....
T Consensus 235 sdkt--v~iwn~~~~---~kle~~l~gh~rWvWd------c~FS~dg~YlvTass---------------------d~~~ 282 (311)
T KOG0315|consen 235 SDKT--VKIWNTDDF---FKLELVLTGHQRWVWD------CAFSADGEYLVTASS---------------------DHTA 282 (311)
T ss_pred CCce--EEEEecCCc---eeeEEEeecCCceEEe------eeeccCccEEEecCC---------------------CCce
Confidence 7765 566665533 1222333333333333 568999999887762 1347
Q ss_pred EEEECCCCCeEEEeccC
Q 002194 555 DLFDINTGSKERIWESD 571 (954)
Q Consensus 555 ~~~d~~~g~~~~l~~~~ 571 (954)
.+||+..++..+.+..-
T Consensus 283 rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eecccccCceeeecCCc
Confidence 88999988877766544
No 110
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.37 E-value=1.2e-11 Score=129.93 Aligned_cols=166 Identities=12% Similarity=0.087 Sum_probs=104.2
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
..+|.|++ .+..|+|.+..... . ++...++.+.+. . .+++.++||||||.+++.++.++|++++++|+
T Consensus 28 ~~~~~vi~---~d~~G~G~s~~~~~---~---~~~~~~~~~~~~--~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il 95 (245)
T TIGR01738 28 SAHFTLHL---VDLPGHGRSRGFGP---L---SLADAAEAIAAQ--A-PDPAIWLGWSLGGLVALHIAATHPDRVRALVT 95 (245)
T ss_pred ccCeEEEE---ecCCcCccCCCCCC---c---CHHHHHHHHHHh--C-CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeE
Confidence 46899999 56667777643221 1 222333333333 2 25899999999999999999999999999998
Q ss_pred eccCCCCCCC-CC--CCc------------cccc---hhhh----------c--H-------------------H---HH
Q 002194 790 RSGAYNRTLT-PF--GFQ------------NEDR---TLWE----------A--T-------------------S---TY 817 (954)
Q Consensus 790 ~~~~~~~~~~-~~--~~~------------~~~~---~~~~----------~--~-------------------~---~~ 817 (954)
+++....... .+ ... .... ..+. . . . .+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
T TIGR01738 96 VASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEIL 175 (245)
T ss_pred ecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 8764221100 00 000 0000 0000 0 0 0 00
Q ss_pred HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
...+....+.++++|+|+++|++|..+| ....+.+.+.+. ++++.++|++||... .++...+.+.+.+|+
T Consensus 176 ~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 176 ATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKLAP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred hcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHhCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 0111122456889999999999999998 777776766543 468889999999874 566778888888774
No 111
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.36 E-value=1.4e-11 Score=132.91 Aligned_cols=195 Identities=18% Similarity=0.120 Sum_probs=114.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-----hHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-----FVEQLVACAE 744 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-----~~~~~~~D~~ 744 (954)
.|.||++||++.... .+ .......+.+.||.|+. .+.+|+|.+..... ......+|+.
T Consensus 25 ~~~vl~~hG~~g~~~-----------~~---~~~~~~~l~~~g~~vi~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-----------EY---LENLRELLKEEGREVIM---YDQLGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCccH-----------HH---HHHHHHHHHhcCCEEEE---EcCCCCCCCCCCCcccccccHHHHHHHHH
Confidence 467888999642110 00 11223333445999999 55567777654311 1233344444
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC-----C--CCCcccc---------c
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P--FGFQNED---------R 808 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-----~--~~~~~~~---------~ 808 (954)
+. .+. .+.+++.++||||||.+++.++.++|++++++|+.+++...... . ..+.... .
T Consensus 88 ~~----~~~--~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EV----REK--LGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HH----HHH--cCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 33 333 23357999999999999999999999999999988764321100 0 0000000 0
Q ss_pred hhhhc---------------------------------HHHH---------------HhcCcccccCCCCCCEEEEEeCC
Q 002194 809 TLWEA---------------------------------TSTY---------------VEMSPFMSANKLKKPILLVHGEE 840 (954)
Q Consensus 809 ~~~~~---------------------------------~~~~---------------~~~sp~~~~~~~~~P~Lii~G~~ 840 (954)
..+.+ ...+ ..++....+.++++|+|+++|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 00000 0000 00011123456889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
|. ++ +.....+.+.+. .+++++++++||... .+....+.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIA----GSRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhcc----CCeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 566666655543 347889999999875 4567788888888873
No 112
>PRK06489 hypothetical protein; Provisional
Probab=99.36 E-value=2.9e-11 Score=134.68 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=107.1
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhh-----HHHHHHHHHHH-HHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCC
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRF-----VEQLVACAEAA-VEEVVRRGVAHPSKIA-VGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~-----~~~~~~D~~~a-v~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~ 782 (954)
+++|.|++ .|..|+|.+..+... ....++++.+. +..+.+.-.+ +++. |+||||||.+|+.++.++|+
T Consensus 103 ~~~~~Via---~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi--~~~~~lvG~SmGG~vAl~~A~~~P~ 177 (360)
T PRK06489 103 ASKYFIIL---PDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGV--KHLRLILGTSMGGMHAWMWGEKYPD 177 (360)
T ss_pred ccCCEEEE---eCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCC--CceeEEEEECHHHHHHHHHHHhCch
Confidence 67899999 666788877543210 01122333322 2223333223 4664 89999999999999999999
Q ss_pred cccEEEEeccCCCCC------C-----------CCC---CCcccc---c--------------------hhh-hc-----
Q 002194 783 LFCCGIARSGAYNRT------L-----------TPF---GFQNED---R--------------------TLW-EA----- 813 (954)
Q Consensus 783 ~~~a~v~~~~~~~~~------~-----------~~~---~~~~~~---~--------------------~~~-~~----- 813 (954)
+++++|++++..... . ..+ .+.... . ... ..
T Consensus 178 ~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T PRK06489 178 FMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLV 257 (360)
T ss_pred hhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHH
Confidence 999999887532100 0 000 000000 0 000 00
Q ss_pred -----------HHHHH-------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHH--HHHHHHHHhCCCcEEEEEeCCC
Q 002194 814 -----------TSTYV-------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS--DRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 814 -----------~~~~~-------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
...+. ..+....+.+|++|+|+|+|++|..+| +..+ +++.+.+.. .+++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip~----a~l~~i~~a 331 (360)
T PRK06489 258 DERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVKH----GRLVLIPAS 331 (360)
T ss_pred HHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCcC----CeEEEECCC
Confidence 00010 112223456789999999999999988 7765 556555533 488999996
Q ss_pred ----CCcCCCcccHHHHHHHHHHHHHHh
Q 002194 874 ----SHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 874 ----~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
||... +..+.+.+.|.+||+++
T Consensus 332 ~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 332 PETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 99874 57888889999999865
No 113
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.35 E-value=6.8e-11 Score=131.49 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=128.6
Q ss_pred ceEEEEEEcC-CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC----
Q 002194 638 QKELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG---- 712 (954)
Q Consensus 638 ~~~~~~~~~~-~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G---- 712 (954)
..+.+++.+. -|.+...++|+|++|. .+ ++|+|+++||..+... .........+.++|
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~~w~~~--------------~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQFWAES--------------MPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECHHhhhc--------------CCHHHHHHHHHHcCCCCc
Confidence 3456666654 4778899999999886 22 5999999999632110 00112344566677
Q ss_pred cEEEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (954)
.+|+.++..+......... ...+...+.++++. ++.++. ..|+++.+|+|+||||+.|++++.++|++|.++++
T Consensus 242 ~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP---~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s 318 (411)
T PRK10439 242 AVYLLIDAIDTTHRSQELPCNADFWLAVQQELLP---QVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLS 318 (411)
T ss_pred eEEEEECCCCcccccccCCchHHHHHHHHHHHHH---HHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEE
Confidence 3345544422211111111 22333334444444 444442 35788999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE
Q 002194 790 RSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI 869 (954)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~ 869 (954)
++|.+-+... ......|- .+.+... ....-...++|.+|+.|..+ ....+++.+.|+.+|.++++.+
T Consensus 319 ~Sgs~ww~~~-----~~~~~~~l-~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~ 385 (411)
T PRK10439 319 QSGSFWWPHR-----GGQQEGVL-LEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQ 385 (411)
T ss_pred eccceecCCc-----cCCchhHH-HHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEE
Confidence 9986421110 00000010 0111110 01112346889999998654 5778999999999999999999
Q ss_pred eCCCCCcCC
Q 002194 870 LPFESHGYA 878 (954)
Q Consensus 870 ~~~~~H~~~ 878 (954)
++| ||.+.
T Consensus 386 ~~G-GHd~~ 393 (411)
T PRK10439 386 VDG-GHDAL 393 (411)
T ss_pred CCC-CcCHH
Confidence 998 79763
No 114
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.35 E-value=1.4e-10 Score=121.33 Aligned_cols=279 Identities=12% Similarity=0.125 Sum_probs=177.5
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeee
Q 002194 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ 183 (954)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt 183 (954)
+......++.++|+-||..||+...+ +.+.+|+. +| .....+.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~---------------------------------G~~riw~~--~G--~l~~tl~ 273 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSED---------------------------------GEARIWNK--DG--NLISTLG 273 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecC---------------------------------cEEEEEec--Cc--hhhhhhh
Confidence 33445568899999999999998875 57889987 44 3333343
Q ss_pred cCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 184 GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 184 ~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
. +.+.+....|+-+|.+|+-.. -...+.++|.-+|+..+........ .-++.|-.+.+..-..
T Consensus 274 ~--HkgPI~slKWnk~G~yilS~~---------vD~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~-- 336 (524)
T KOG0273|consen 274 Q--HKGPIFSLKWNKKGTYILSGG---------VDGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSS-- 336 (524)
T ss_pred c--cCCceEEEEEcCCCCEEEecc---------CCccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecC--
Confidence 2 334789999999999999843 3456677788888887776555431 2367897666533322
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCC-ccccccccC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPS 340 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~-~~~~~~~~S 340 (954)
....|+++-+ ++....+... +.+..+.|.
T Consensus 337 ------------------------------------------------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 337 ------------------------------------------------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred ------------------------------------------------CCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 1123444444 4444444445 888899999
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
|-|+.|+..+.+. ++.||... +.....+..+ ...+..+.|||+|...- -
T Consensus 369 ~tg~LLaS~SdD~-------------TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v~~----n 418 (524)
T KOG0273|consen 369 PTGSLLASCSDDG-------------TLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPVTS----N 418 (524)
T ss_pred CCCceEEEecCCC-------------eeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCccC----C
Confidence 9999999988543 78889855 3222222221 23345688999987211 0
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
...+.....+.....|.+|++ ..+.....++++...+++++|||+|++|++.+-++. +.+.+..++ +...-.
T Consensus 419 ~~~~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~----V~iws~~~~--~l~~s~ 490 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC----VHIWSTKTG--KLVKSY 490 (524)
T ss_pred CcCCceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe----eEeccccch--heeEee
Confidence 001111122244567888886 455556677888999999999999999999865543 444555553 111111
Q ss_pred cCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 500 DRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.....++. +.|+.+|..|.....
T Consensus 491 -~~~~~Ife------l~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 491 -QGTGGIFE------LCWNAAGDKLGACAS 513 (524)
T ss_pred -cCCCeEEE------EEEcCCCCEEEEEec
Confidence 11111222 899999988877763
No 115
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.34 E-value=2.4e-10 Score=112.11 Aligned_cols=252 Identities=14% Similarity=0.102 Sum_probs=154.0
Q ss_pred eceEEEEccCCC-CCC-ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc
Q 002194 163 TGIGIHQLFPDG-KLG-QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g-~~~-~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (954)
..+.+|++..|. ..| ..++++++ ...+.....|+||.+.+-.+ -...|.++|+.+|+.++.+-.+..
T Consensus 38 k~ii~W~L~~dd~~~G~~~r~~~GH--sH~v~dv~~s~dg~~alS~s---------wD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 38 KTIIVWKLTSDDIKYGVPVRRLTGH--SHFVSDVVLSSDGNFALSAS---------WDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred eEEEEEEeccCccccCceeeeeecc--ceEecceEEccCCceEEecc---------ccceEEEEEecCCcEEEEEEecCC
Confidence 467888886542 122 24566653 24789999999998765533 255777889999888777665554
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
. +-.+++++|.+.|+..+ ....|-+++
T Consensus 107 d----Vlsva~s~dn~qivSGS-------------------------------------------------rDkTiklwn 133 (315)
T KOG0279|consen 107 D----VLSVAFSTDNRQIVSGS-------------------------------------------------RDKTIKLWN 133 (315)
T ss_pred c----eEEEEecCCCceeecCC-------------------------------------------------Ccceeeeee
Confidence 3 67899999999998551 112355666
Q ss_pred e-CCceeEcCCC---ccccccccCCCCc--EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccc
Q 002194 321 L-DGTVKEIGPP---AVYTSLDPSPDEK--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAF 394 (954)
Q Consensus 321 ~-~G~~~~l~~~---~~~~~~~~SpDGk--~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~ 394 (954)
. ++-...+... ..+..+.|||... .|+-.+ .++.+.+||+++-+.+.-..
T Consensus 134 t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-------------~DktvKvWnl~~~~l~~~~~----------- 189 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-------------WDKTVKVWNLRNCQLRTTFI----------- 189 (315)
T ss_pred ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-------------CCceEEEEccCCcchhhccc-----------
Confidence 6 4322233322 5678899999853 333333 24589999999765443221
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+....+..+++||||...++- +..+.+++||+ +.++.-.-......+.+++|||.--+|..+.
T Consensus 190 -gh~~~v~t~~vSpDGslcasG-------------gkdg~~~LwdL---~~~k~lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 190 -GHSGYVNTVTVSPDGSLCASG-------------GKDGEAMLWDL---NEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred -cccccEEEEEECCCCCEEecC-------------CCCceEEEEEc---cCCceeEeccCCCeEeeEEecCCceeEeecc
Confidence 233455679999999977663 34668999997 3333322234455678999999987777654
Q ss_pred eccccceEEEEEcCCCCCCCcEEEecCCCCCc-----cCCCCCCCeeeccCCcEEEEEE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRILFDRSSEDV-----YSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~spdG~~l~~~~ 528 (954)
... ..|| |++++. .+.+...... .+.+.--.++||+||.+|+...
T Consensus 253 ~~s---IkIw--dl~~~~----~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 ATS---IKIW--DLESKA----VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCc---eEEE--eccchh----hhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 321 4444 444431 1111110000 0011111278999999988776
No 116
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.34 E-value=2.9e-11 Score=136.05 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=104.0
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
+.++|.|+. ++..|+|.+... ........+++. .+.+. ++..++.++|||+||.+++.++.++|+++++
T Consensus 154 l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~ 224 (371)
T PRK14875 154 LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVL----AFLDA--LGIERAHLVGHSMGGAVALRLAARAPQRVAS 224 (371)
T ss_pred HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHH----HHHHh--cCCccEEEEeechHHHHHHHHHHhCchheeE
Confidence 446799999 666677776322 122233333333 33333 3556899999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCC----cc-----------------ccchhhh---c----------HHH---HH---------hc
Q 002194 787 GIARSGAYNRTLTPFGF----QN-----------------EDRTLWE---A----------TST---YV---------EM 820 (954)
Q Consensus 787 ~v~~~~~~~~~~~~~~~----~~-----------------~~~~~~~---~----------~~~---~~---------~~ 820 (954)
+|++++..........+ .. .....+. . ... +. ..
T Consensus 225 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
T PRK14875 225 LTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRV 304 (371)
T ss_pred EEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccch
Confidence 99988753211000000 00 0000000 0 000 00 01
Q ss_pred CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+....+.++++|+|++||++|..+| +.++..++ ..+++.++|++||... .++...+.+.|.+||++
T Consensus 305 ~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~-------~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 305 DLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP-------DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred hHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc-------CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 1122456789999999999999998 77665442 2368889999999874 55666777777777754
No 117
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.33 E-value=6.3e-11 Score=118.91 Aligned_cols=226 Identities=18% Similarity=0.155 Sum_probs=140.0
Q ss_pred CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC-
Q 002194 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG- 725 (954)
Q Consensus 647 ~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G- 725 (954)
..|...+++||.|++.+. ..|+||++||+.+. ..++.+.+ .| -......||.|+.++..+..-
T Consensus 42 ~~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~s---gag~~~~s--g~-------d~lAd~~gFlV~yPdg~~~~wn 105 (312)
T COG3509 42 VNGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGS---GAGQLHGT--GW-------DALADREGFLVAYPDGYDRAWN 105 (312)
T ss_pred cCCCccceEEEcCCCCCC----CCCEEEEEecCCCC---hHHhhccc--ch-------hhhhcccCcEEECcCccccccC
Confidence 367889999999998532 25999999997432 22232221 11 223345899999975543321
Q ss_pred ---CCCcccch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC-CCCCC
Q 002194 726 ---EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLT 799 (954)
Q Consensus 726 ---~G~~~~~~--~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-~~~~~ 799 (954)
.+..+.+. ...-.++..+.+.++.|..+.-||+.||+|.|.|.||.|+..+++.+|+.|.|+..+++.. +...
T Consensus 106 ~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a- 184 (312)
T COG3509 106 ANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVA- 184 (312)
T ss_pred CCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcc-
Confidence 22221122 2234567788889999999989999999999999999999999999999999999998864 1110
Q ss_pred CCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh-------------------
Q 002194 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG------------------- 860 (954)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~------------------- 860 (954)
..... +..-...--..+|......=..| |-+|..|..|+ ..+..+.++.+..
T Consensus 185 ---~~~~r--p~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 185 ---CTPPR--PVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred ---cCCCC--chhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 00000 00000000001221111111123 77888888776 6666555565532
Q ss_pred ----CCCcEEEEEeCCCCCcCCCccc-----------HHHHHHHHHHHHHHhc
Q 002194 861 ----HGALCRLVILPFESHGYAARES-----------IMHVLWETDRWLQKYC 898 (954)
Q Consensus 861 ----~g~~~~~~~~~~~~H~~~~~~~-----------~~~~~~~i~~fl~~~l 898 (954)
.+.++++..+.+.||.+..... ..+..+.|-+||..+-
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 1235889999999998853111 1235677888988763
No 118
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.33 E-value=8.8e-12 Score=119.37 Aligned_cols=164 Identities=18% Similarity=0.213 Sum_probs=123.3
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCc---ccchhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDE---EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~---~~~~~~-----~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
.+..++..||.|+.++.+...-+.-+ .....| .+....|+...++||..++ +..+|+++|++|||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 45667789999999888543211111 111122 2345789999999999775 4579999999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
+.+..| .|.++++..|.+- + ..-+.++++|+|++.|+.|..+| +....++-
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 998886 7999988887421 1 12345678999999999999999 88888888
Q ss_pred HHHHhCC-CcEEEEEeCCCCCcCCC-------c---ccHHHHHHHHHHHHHHhc
Q 002194 856 NALKGHG-ALCRLVILPFESHGYAA-------R---ESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 856 ~~l~~~g-~~~~~~~~~~~~H~~~~-------~---~~~~~~~~~i~~fl~~~l 898 (954)
++++..- ...++.+|++.+|+|.. + ...++.++.++.||++|+
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 8888764 23578999999999863 1 124678889999999987
No 119
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.32 E-value=1.3e-10 Score=125.08 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=104.4
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
..++|.|++ .+..|+|.+..+... ...+++..+.+..+++.. +.+++.++||||||.+++.++..+|++++++|
T Consensus 57 l~~~~~vi~---~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lv 130 (286)
T PRK03204 57 LRDRFRCVA---PDYLGFGLSERPSGF-GYQIDEHARVIGEFVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVV 130 (286)
T ss_pred HhCCcEEEE---ECCCCCCCCCCCCcc-ccCHHHHHHHHHHHHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEE
Confidence 456799999 666788877543221 122445555555555542 34689999999999999999999999999999
Q ss_pred EeccCCCCC-CC----------C----CCCcc-----cc----ch--hh--hcHHHHHh-----------------c---
Q 002194 789 ARSGAYNRT-LT----------P----FGFQN-----ED----RT--LW--EATSTYVE-----------------M--- 820 (954)
Q Consensus 789 ~~~~~~~~~-~~----------~----~~~~~-----~~----~~--~~--~~~~~~~~-----------------~--- 820 (954)
+.++..-.. .. . ..... .. .. .. +....+.. .
T Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T PRK03204 131 LGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAA 210 (286)
T ss_pred EECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchh
Confidence 876542100 00 0 00000 00 00 00 00000000 0
Q ss_pred Cc-ccc----cC--CCCCCEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHH
Q 002194 821 SP-FMS----AN--KLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (954)
Q Consensus 821 sp-~~~----~~--~~~~P~Lii~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 892 (954)
.+ +.. +. .+++|+|+++|++|..++ +.. ++.+.+.+.. .++++++++||... .+..+.+.+.|.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~~~~~ip~----~~~~~i~~aGH~~~-~e~Pe~~~~~i~~ 283 (286)
T PRK03204 211 RPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPRLRATFPD----HVLVELPNAKHFIQ-EDAPDRIAAAIIE 283 (286)
T ss_pred hHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHHHHHhcCC----CeEEEcCCCccccc-ccCHHHHHHHHHH
Confidence 00 000 01 127999999999999875 443 4555554443 58889999999974 6777888888888
Q ss_pred HH
Q 002194 893 WL 894 (954)
Q Consensus 893 fl 894 (954)
||
T Consensus 284 ~~ 285 (286)
T PRK03204 284 RF 285 (286)
T ss_pred hc
Confidence 86
No 120
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.32 E-value=2.5e-10 Score=112.53 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=183.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcc---------ccccccceeeeeeecCCCCCCcceeeEeceEEEEccCC---CCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD---GKLG 177 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---g~~~ 177 (954)
.+....||+|+++|+..+.++...+| .++-|-.++-.-.++|.++....++-++.--|++++.. |...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 45677888888888888877554444 33345555555677888776665555566778888632 2222
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec-CCe
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NST 256 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~ 256 (954)
..+.|.+++ .+.+...|-+|+ +|+.. +|....-++|+++|+..+.+...... +-.+..+| |++
T Consensus 137 v~r~l~gHt--gylScC~f~dD~-~ilT~---------SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~n 200 (343)
T KOG0286|consen 137 VSRELAGHT--GYLSCCRFLDDN-HILTG---------SGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGN 200 (343)
T ss_pred eeeeecCcc--ceeEEEEEcCCC-ceEec---------CCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCC
Confidence 345565543 578888998765 57663 34566667788898887776655544 66788889 888
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-cc
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AV 333 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~ 333 (954)
.++.... ....+++|+ .|..++-.. + ..
T Consensus 201 tFvSg~c-------------------------------------------------D~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 201 TFVSGGC-------------------------------------------------DKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred eEEeccc-------------------------------------------------ccceeeeeccCcceeEeecccccc
Confidence 7775411 112345566 665444443 3 78
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
+..+.|-|+|-.++..+.+. ...+||+...+.-.+...+ ....|+.+++||-.|+.+
T Consensus 232 INsv~ffP~G~afatGSDD~-------------tcRlyDlRaD~~~a~ys~~----------~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDA-------------TCRLYDLRADQELAVYSHD----------SIICGITSVAFSKSGRLL 288 (343)
T ss_pred cceEEEccCCCeeeecCCCc-------------eeEEEeecCCcEEeeeccC----------cccCCceeEEEcccccEE
Confidence 88999999998888777443 7788999865433333322 122567899999999854
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEE
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
+.- .....+.+||. ..+...-.|..++.++..+..+|||-.+...+|+.. .+||
T Consensus 289 fag-------------y~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~--lriW 342 (343)
T KOG0286|consen 289 FAG-------------YDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST--LRIW 342 (343)
T ss_pred Eee-------------ecCCceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhHh--eeec
Confidence 332 12346788985 677777788999999999999999999999998875 6666
No 121
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.31 E-value=2.2e-10 Score=119.33 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=130.1
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
+.+++..|. +.++++.|.+ ..+.|+||++||.... .+.+.......+..|+++||.|+. +
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~-----~~~~~~VlllHG~g~~-----------~~~~~~~~~~la~~La~~Gy~Vl~---~ 62 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVA-----VGPRGVVIYLPPFAEE-----------MNKSRRMVALQARAFAAGGFGVLQ---I 62 (266)
T ss_pred EEecCCCCc-EEEEEecCCC-----CCCceEEEEECCCccc-----------ccchhHHHHHHHHHHHHCCCEEEE---E
Confidence 455655554 6788887764 2246899999995210 011111111346678889999999 6
Q ss_pred CCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC
Q 002194 722 PIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 722 ~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~ 799 (954)
|..|+|.+... ........+|+..+++++.+++ ..+++++||||||.+++.++.++|+.++++|+.+|+.+....
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 66677877442 2234567899999999998764 358999999999999999999999999999999987652110
Q ss_pred CCC----------Cccccc----hh--------------h----hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCc
Q 002194 800 PFG----------FQNEDR----TL--------------W----EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 800 ~~~----------~~~~~~----~~--------------~----~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
-.. ...... .. + +-...+...+....+. ...++|++.-..+.--+ .
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~ 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-KNCPVHWFEVRPEEGAT-L 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-CCCceEEEEeccccCCC-C
Confidence 000 000000 00 0 0011122222211111 14578888764332211 1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 848 TMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
.....++.++++..|+.++...|++.
T Consensus 218 ~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45678899999999999999999986
No 122
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=1.4e-09 Score=120.06 Aligned_cols=227 Identities=11% Similarity=0.131 Sum_probs=144.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..++|+--|.+|||.... . ++|-||++.. +.-.+....+-.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--------------------------l------gQLlVweWqs-----EsYVlKQQgH~~ 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--------------------------L------GQLLVWEWQS-----ESYVLKQQGHSD 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--------------------------c------ceEEEEEeec-----cceeeecccccc
Confidence 45677888889999997763 0 3677777732 223333221223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....+||||+.||... +...|-+||...|-....+..+... +..+.|+.+|+.++.++
T Consensus 352 ~i~~l~YSpDgq~iaTG~---------eDgKVKvWn~~SgfC~vTFteHts~----Vt~v~f~~~g~~llssS------- 411 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA---------EDGKVKVWNTQSGFCFVTFTEHTSG----VTAVQFTARGNVLLSSS------- 411 (893)
T ss_pred ceeeEEECCCCcEEEecc---------CCCcEEEEeccCceEEEEeccCCCc----eEEEEEEecCCEEEEee-------
Confidence 788899999999999843 3556677787777665333323222 77899999999998771
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC--ccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
-+ | .+-.+|+ .+ .-+.++.+ .....++..|-|..
T Consensus 412 --------------LD--------------------------G--tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 412 --------------LD--------------------------G--TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred --------------cC--------------------------C--eEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 11 2 2334455 33 33444444 44556666676876
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+...+.+ ..+|++|++.+++... |..++ +.+..++|+|+|..|+-.
T Consensus 450 V~AG~~d------------~F~IfvWS~qTGqllDiLsGHE-------------gPVs~l~f~~~~~~LaS~-------- 496 (893)
T KOG0291|consen 450 VCAGAQD------------SFEIFVWSVQTGQLLDILSGHE-------------GPVSGLSFSPDGSLLASG-------- 496 (893)
T ss_pred EEeeccc------------eEEEEEEEeecCeeeehhcCCC-------------CcceeeEEccccCeEEec--------
Confidence 6655422 1289999999776544 33333 344678999999965543
Q ss_pred ccccccCCCeEEEEecCCCCC-CCceEEeecccccCceeeccCCceEEEEEec
Q 002194 425 AKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+-...|.+|++ ++. ++.+.+ ....++-.++|+|||+.|+.+.-+
T Consensus 497 -----SWDkTVRiW~i--f~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 497 -----SWDKTVRIWDI--FSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred -----cccceEEEEEe--eccCceeeeE-eeccceeEEEEcCCCCeEEEEEec
Confidence 33556778886 333 333333 334456789999999999988644
No 123
>PRK07581 hypothetical protein; Validated
Probab=99.31 E-value=6.5e-11 Score=131.08 Aligned_cols=181 Identities=12% Similarity=0.039 Sum_probs=113.3
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchh----hH------HHHHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHH
Q 002194 707 LWLARGFAILGGPTTPIIGEGDEEANDR----FV------EQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTAN 775 (954)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~----~~------~~~~~D~~~av~~l~~~~~~d~~r-i~l~G~S~GG~~a~~ 775 (954)
.|...+|.|++ .+.+|+|.+..+.. +. ....+|+.+.+..|.+.-.+ ++ ..|+||||||++|+.
T Consensus 66 ~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi--~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIII---PNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFGI--ERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEE---ecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhCC--CceEEEEEeCHHHHHHHH
Confidence 34457899999 66678887753321 10 11335555544445543223 57 478999999999999
Q ss_pred HHHhCCCcccEEEEeccCCCCCC----------------CCC---CCc--cc---------c------chhhh-------
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTL----------------TPF---GFQ--NE---------D------RTLWE------- 812 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~----------------~~~---~~~--~~---------~------~~~~~------- 812 (954)
++.++|++++.+|++++...... ..+ .+. .. . ...+.
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865321000 000 000 00 0 00000
Q ss_pred ---c-HH----H-------------------HHhc----------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 813 ---A-TS----T-------------------YVEM----------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 813 ---~-~~----~-------------------~~~~----------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
. .+ . +... +....+.++++|+|+++|++|..+| +..++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 0 00 0 0000 1112345688999999999999998 88887776
Q ss_pred HHHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHHHHHhcc
Q 002194 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (954)
+.+.. .+++++++ +||... .+....+...+.+||.+++.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~~-~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLAG-FGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCcccc-ccCcHHHHHHHHHHHHHHHh
Confidence 66533 48889998 899763 56667788899999998863
No 124
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.30 E-value=1.6e-09 Score=115.90 Aligned_cols=266 Identities=15% Similarity=0.126 Sum_probs=160.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.|+|||+.|++... ...|++++.++++........... +..+.|+|+++.|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~------ 70 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG---------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGS------ 70 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec---------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEc------
Confidence 46888999999999998642 456777777666433322222221 45789999998888761
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
....|+++++ ++ ....+... ..+..+.|+|+++.
T Consensus 71 -------------------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 71 -------------------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred -------------------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 1234777777 43 34444444 56788999999877
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
++..... +.+.+|++...+ ...+..+. ..+..+.|+|+++.++..
T Consensus 108 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-------- 153 (289)
T cd00200 108 LSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTFVASS-------- 153 (289)
T ss_pred EEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCEEEEE--------
Confidence 7666522 389999998443 33333211 234678999997654443
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 504 (954)
...+.+.+|++ ..+.....+......+..+.|+|+++.|++.... ..+.+++...+ ...........
T Consensus 154 -----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 154 -----SQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD----GTIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred -----cCCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecCC----CcEEEEECCCC--ceecchhhcCC
Confidence 22457888886 2233344455555578889999999988887652 24666666553 22222212211
Q ss_pred CccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEecc
Q 002194 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (954)
Q Consensus 505 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 584 (954)
.+.. +.|+|++.+++... ....|++||+.+++.......... .+.
T Consensus 221 ~i~~------~~~~~~~~~~~~~~---------------------~~~~i~i~~~~~~~~~~~~~~~~~----~i~---- 265 (289)
T cd00200 221 GVNS------VAFSPDGYLLASGS---------------------EDGTIRVWDLRTGECVQTLSGHTN----SVT---- 265 (289)
T ss_pred ceEE------EEEcCCCcEEEEEc---------------------CCCcEEEEEcCCceeEEEccccCC----cEE----
Confidence 2222 77899876665543 122489999987665544432211 111
Q ss_pred CCccccccccCCEEEEE
Q 002194 585 DQTEGDLYLNQLKILTS 601 (954)
Q Consensus 585 ~~~~~~~s~dg~~l~~~ 601 (954)
...|+++++.++..
T Consensus 266 ---~~~~~~~~~~l~~~ 279 (289)
T cd00200 266 ---SLAWSPDGKRLASG 279 (289)
T ss_pred ---EEEECCCCCEEEEe
Confidence 14577777665543
No 125
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.29 E-value=5.1e-11 Score=126.42 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=115.1
Q ss_pred cEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 002194 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEV 750 (954)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l 750 (954)
|.||++||.+.... .| . .....| +..|.|++ .|..|+|.+.....+ .++++ ++.+
T Consensus 14 ~~ivllHG~~~~~~-----------~w---~-~~~~~L-~~~~~vi~---~Dl~G~G~S~~~~~~---~~~~~---~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLNAE-----------VW---R-CIDEEL-SSHFTLHL---VDLPGFGRSRGFGAL---SLADM---AEAV 68 (256)
T ss_pred CeEEEECCCCCChh-----------HH---H-HHHHHH-hcCCEEEE---ecCCCCCCCCCCCCC---CHHHH---HHHH
Confidence 56899999632111 11 1 223334 45699999 677788877543221 12222 2333
Q ss_pred HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---CCCCc-----------cccch---hh--
Q 002194 751 VRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGFQ-----------NEDRT---LW-- 811 (954)
Q Consensus 751 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~~-----------~~~~~---~~-- 811 (954)
.+. ..+++.++||||||.+++.++.++|++++.+|++++....... ..... ..... .+
T Consensus 69 ~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (256)
T PRK10349 69 LQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLA 145 (256)
T ss_pred Hhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHH
Confidence 332 2468999999999999999999999999999988763211000 00000 00000 00
Q ss_pred ----------hcH----------------------HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002194 812 ----------EAT----------------------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (954)
Q Consensus 812 ----------~~~----------------------~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~ 859 (954)
... ..+...+....+.++++|+|+++|++|..+| .+.+..+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i~ 223 (256)
T PRK10349 146 LQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWP 223 (256)
T ss_pred HHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhCC
Confidence 000 0001112223456788999999999999988 766665555443
Q ss_pred hCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.++.++|++||... .++.+.+.+.+.+|-+
T Consensus 224 ----~~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 224 ----HSESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred ----CCeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 358899999999874 5777788888877743
No 126
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=1.3e-09 Score=120.43 Aligned_cols=290 Identities=14% Similarity=0.169 Sum_probs=155.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|+++.+..+ .++...+.............++||++.|+.+... ....+....|.++.++|+...+......+
T Consensus 13 ~gI~~~~~d~~--~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~---~~~~g~v~~~~i~~~~g~L~~~~~~~~~g- 86 (345)
T PF10282_consen 13 GGIYVFRFDEE--TGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG---SGDSGGVSSYRIDPDTGTLTLLNSVPSGG- 86 (345)
T ss_dssp TEEEEEEEETT--TTEEEEEEEEEESSSECCEEE-TTSSEEEEEETT---SSTTTEEEEEEEETTTTEEEEEEEEEESS-
T ss_pred CcEEEEEEcCC--CCCceEeeeecCCCCCceEEEEeCCCEEEEEEcc---ccCCCCEEEEEECCCcceeEEeeeeccCC-
Confidence 36888888322 2444434322233467888999999877665421 11345566677776667766654333110
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.....++.+|||+.|+.+. |+.+.+..+++
T Consensus 87 -~~p~~i~~~~~g~~l~van------------------------------------------------y~~g~v~v~~l~ 117 (345)
T PF10282_consen 87 -SSPCHIAVDPDGRFLYVAN------------------------------------------------YGGGSVSVFPLD 117 (345)
T ss_dssp -SCEEEEEECTTSSEEEEEE------------------------------------------------TTTTEEEEEEEC
T ss_pred -CCcEEEEEecCCCEEEEEE------------------------------------------------ccCCeEEEEEcc
Confidence 0023567789999999871 12334555555
Q ss_pred -CCceeEcC--------------CC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEecc
Q 002194 322 -DGTVKEIG--------------PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCD 383 (954)
Q Consensus 322 -~G~~~~l~--------------~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~ 383 (954)
+|...... .. .....+.++|||++++...... ..|++++++... ......
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------DRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------TEEEEEEE-TTS-TEEEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------CEEEEEEEeCCCceEEEeec
Confidence 45333221 01 2334678999999998765332 278888887433 333211
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee-----ccc--
Q 002194 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-----LDL-- 456 (954)
Q Consensus 384 ~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-----~~~-- 456 (954)
... ....|++.++|+|||+.++.. .+. .+.|.++++++ ..+..+.+.. ...
T Consensus 186 ~~~---------~~G~GPRh~~f~pdg~~~Yv~-~e~-----------s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 186 IKV---------PPGSGPRHLAFSPDGKYAYVV-NEL-----------SNTVSVFDYDP-SDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp EEC---------STTSSEEEEEE-TTSSEEEEE-ETT-----------TTEEEEEEEET-TTTEEEEEEEEESCETTSCS
T ss_pred ccc---------ccCCCCcEEEEcCCcCEEEEe-cCC-----------CCcEEEEeecc-cCCceeEEEEeeeccccccc
Confidence 111 112577899999999865443 322 34666666521 2333333311 111
Q ss_pred --ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC--CCCccCCCCCCCeeeccCCcEEEEEEeecc
Q 002194 457 --RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKEN 532 (954)
Q Consensus 457 --~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 532 (954)
....+.+||||++|+.+. +......+|.++..++ ....+.... ...... +.++|||++|+.....
T Consensus 244 ~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G~~Pr~------~~~s~~g~~l~Va~~~-- 312 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGGKFPRH------FAFSPDGRYLYVANQD-- 312 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESSSSEEE------EEE-TTSSEEEEEETT--
T ss_pred cCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCCCCccE------EEEeCCCCEEEEEecC--
Confidence 234589999999877764 4333355666655554 333322111 111111 7789999999877521
Q ss_pred CCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 533 DEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
++.-.++.+|.++|..+.+-
T Consensus 313 ----------------s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 ----------------SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ----------------TTEEEEEEEETTTTEEEEEE
T ss_pred ----------------CCeEEEEEEeCCCCcEEEec
Confidence 12334666777888766554
No 127
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.29 E-value=6.9e-11 Score=111.79 Aligned_cols=210 Identities=15% Similarity=0.120 Sum_probs=137.9
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
....+.++...+..+-+.+..- +..-++|++||.- . +...-+....+..++..||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t--------gs~e~vvlcHGfr---------S----~Kn~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET--------GSTEIVVLCHGFR---------S----HKNAIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceecc--------CCceEEEEeeccc---------c----ccchHHHHHHHHHHHhcCceEEE
Confidence 3456677777777666644432 2256899999941 0 11111223456667789999999
Q ss_pred cCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 718 GPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|+.|.|++...-.+ +..+.+|+..+++++..... .--+|.|||-||.+++..+.++++ +.-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 888999988664222 34567999999999976422 124799999999999999999966 778888888776
Q ss_pred CCCC--------------CCCCcc------ccchhhhcHHHHHhcC--cccccC--CCCCCEEEEEeCCCCCCCCchHHH
Q 002194 796 RTLT--------------PFGFQN------EDRTLWEATSTYVEMS--PFMSAN--KLKKPILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 796 ~~~~--------------~~~~~~------~~~~~~~~~~~~~~~s--p~~~~~--~~~~P~Lii~G~~D~~v~~~~~~~ 851 (954)
.... .-+|.+ .....|.........+ -..... ..+||+|-+||..|.+|| .+++
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 3211 001111 0111121111111111 111122 246899999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcc
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARE 881 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (954)
.++.+.+..+ ++.++||++|.++..+
T Consensus 219 kefAk~i~nH----~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 219 KEFAKIIPNH----KLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHHhccCC----ceEEecCCCcCccchh
Confidence 9998887764 8899999999997544
No 128
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=119.14 Aligned_cols=228 Identities=17% Similarity=0.152 Sum_probs=139.2
Q ss_pred EEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC
Q 002194 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (954)
Q Consensus 643 ~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (954)
.++..||..+...+..++. ....|+||.+||-. |+. .+.+.......+.++||.|++ +.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~-----------G~s--~s~y~r~L~~~~~~rg~~~Vv---~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLE-----------GSS--NSPYARGLMRALSRRGWLVVV---FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccC-----------CCC--cCHHHHHHHHHHHhcCCeEEE---Ee
Confidence 4555666655555554422 11269999999942 111 112233456667789999999 55
Q ss_pred CCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccCCCCCC
Q 002194 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGAYNRTL 798 (954)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~~~~~~ 798 (954)
.+|++.+.. +.-+.....+|+..++++++++. -+.++.++|.|+||.|-+...+...+ .+.|+++++..+|...
T Consensus 112 ~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 112 FRGCSGEANTSPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred cccccCCcccCcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 556655532 33444556799999999999864 35689999999999655555554322 3455555554333110
Q ss_pred ------CCCC--------------------------Cccc-------cchhhh--------------cHHHHHhcCcccc
Q 002194 799 ------TPFG--------------------------FQNE-------DRTLWE--------------ATSTYVEMSPFMS 825 (954)
Q Consensus 799 ------~~~~--------------------------~~~~-------~~~~~~--------------~~~~~~~~sp~~~ 825 (954)
..+. .... .++.|+ ..+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0000 0000 011221 2466778899999
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh-CCCcEEEEEeCCCCCcCC-C-cc-cHH-HHHHHHHHHHHHhcc
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-HGALCRLVILPFESHGYA-A-RE-SIM-HVLWETDRWLQKYCV 899 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~~-~-~~-~~~-~~~~~i~~fl~~~l~ 899 (954)
+.+|.+|+||||..+|++++ ...- ..... ....+.+.+-+..||.-. . .. ... -.-+++.+||+.++.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~i----P~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEVI----PKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhhC----CcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999987 4221 11122 345688889998899532 1 11 222 334578999998763
No 129
>PLN02578 hydrolase
Probab=99.29 E-value=1.4e-10 Score=128.88 Aligned_cols=170 Identities=19% Similarity=0.170 Sum_probs=107.9
Q ss_pred HHCCcEEEEcCCCCCCCCCCcccch-h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 709 LARGFAILGGPTTPIIGEGDEEAND-R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~-~-~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
.+++|.|++ .|..|+|.+..+. . ......+|+.+.++.+. .+++.++|||+||++++.++.++|+++++
T Consensus 109 l~~~~~v~~---~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 109 LAKKYKVYA---LDLLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred HhcCCEEEE---ECCCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 356799999 5666777775432 1 12333455555555542 35799999999999999999999999999
Q ss_pred EEEeccCCCCCCCC------------CC---Ccccc--------------------------chhhhc------------
Q 002194 787 GIARSGAYNRTLTP------------FG---FQNED--------------------------RTLWEA------------ 813 (954)
Q Consensus 787 ~v~~~~~~~~~~~~------------~~---~~~~~--------------------------~~~~~~------------ 813 (954)
+|++++........ .. +.... ...+.+
T Consensus 180 lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 180 VALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 99887532110000 00 00000 000000
Q ss_pred ---------HHHHH-----------hcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 814 ---------TSTYV-----------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 814 ---------~~~~~-----------~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
.+.+. ..+....+.++++|+|+++|++|..|| ...+.++.+.+.. .+++++ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p~----a~l~~i-~~ 332 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYPD----TTLVNL-QA 332 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CEEEEe-CC
Confidence 00000 001122356789999999999999998 8888777666532 477777 57
Q ss_pred CCcCCCcccHHHHHHHHHHHHH
Q 002194 874 SHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
||... .+....+.+.|.+|+.
T Consensus 333 GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 333 GHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCcc-ccCHHHHHHHHHHHHh
Confidence 99874 6777888899999975
No 130
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.27 E-value=7.7e-11 Score=130.89 Aligned_cols=239 Identities=20% Similarity=0.283 Sum_probs=156.1
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc-cHHHHHHHHCCcEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG-STSVLLWLARGFAI 715 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~G~~V 715 (954)
+....+.++.+||++|.+.||+|++ .++.|+++..+-.|...... ..+.... ......|+++||+|
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~~--------~~~~~~~~~p~~~~~aa~GYav 83 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRNG--------TFGPQLSALPQPAWFAAQGYAV 83 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeeccccccccc--------cCcchhhcccccceeecCceEE
Confidence 4456788999999999999999986 35699999887333322210 0000000 00113689999999
Q ss_pred EEcCCCCCCCCCCcccchhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~-~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
+. .+.+|.|.|++.-.... ++.+|..+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++...+..
T Consensus 84 V~---qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~ 159 (563)
T COG2936 84 VN---QDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLV 159 (563)
T ss_pred EE---ecccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccc
Confidence 99 67778888877533333 58999999999999999876 699999999999999999999999999999988876
Q ss_pred CCCCC--------------CCC-----Ccc-----c------------------------cchhhh------c---HHHH
Q 002194 795 NRTLT--------------PFG-----FQN-----E------------------------DRTLWE------A---TSTY 817 (954)
Q Consensus 795 ~~~~~--------------~~~-----~~~-----~------------------------~~~~~~------~---~~~~ 817 (954)
|.... .|. ... . ...+|. . .+.+
T Consensus 160 D~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW 239 (563)
T COG2936 160 DRYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFW 239 (563)
T ss_pred cccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchh
Confidence 62110 000 000 0 000000 0 0112
Q ss_pred HhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc-----HHHHHHHHHH
Q 002194 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES-----IMHVLWETDR 892 (954)
Q Consensus 818 ~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~-----~~~~~~~i~~ 892 (954)
.+.+-.....++++|+|++.|-.|.. ...+.++|..++.. +..+++-|- .|....... .....+...+
T Consensus 240 ~~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~ 312 (563)
T COG2936 240 RRGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDD 312 (563)
T ss_pred hccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHh
Confidence 33344556678899999999999975 45677788887764 356666664 565422222 2333444556
Q ss_pred HHHHhcc
Q 002194 893 WLQKYCV 899 (954)
Q Consensus 893 fl~~~l~ 899 (954)
||+.++.
T Consensus 313 ~l~~~~~ 319 (563)
T COG2936 313 FLDAYLD 319 (563)
T ss_pred hhhHhhh
Confidence 6655554
No 131
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.27 E-value=2.8e-09 Score=117.76 Aligned_cols=226 Identities=18% Similarity=0.216 Sum_probs=147.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc--eeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
.+..++|+--|.||||... ...+|-+++-.+.. .+|-..... +..++.||||++|+....
T Consensus 309 ~I~t~~~N~tGDWiA~g~~--------klgQLlVweWqsEsYVlKQQgH~~~------i~~l~YSpDgq~iaTG~e---- 370 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS--------KLGQLLVWEWQSESYVLKQQGHSDR------ITSLAYSPDGQLIATGAE---- 370 (893)
T ss_pred eeeEEEecccCCEEEEcCC--------ccceEEEEEeeccceeeeccccccc------eeeEEECCCCcEEEeccC----
Confidence 6888999999999999542 24455555544322 122111111 668999999999996511
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 344 (954)
.+.+-++|. .| -....+++ ..++.+.|+.+|+
T Consensus 371 ---------------------------------------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 371 ---------------------------------------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred ---------------------------------------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC
Confidence 123456666 55 34455666 7889999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
.|+.++.+ +.+..||+.. ...|..+... |+.| .-++--|.|. |++. ...
T Consensus 406 ~llssSLD-------------GtVRAwDlkRYrNfRTft~P~-----p~Qf-------scvavD~sGe-lV~A-G~~--- 455 (893)
T KOG0291|consen 406 VLLSSSLD-------------GTVRAWDLKRYRNFRTFTSPE-----PIQF-------SCVAVDPSGE-LVCA-GAQ--- 455 (893)
T ss_pred EEEEeecC-------------CeEEeeeecccceeeeecCCC-----ceee-------eEEEEcCCCC-EEEe-ecc---
Confidence 99988854 4899999984 4556655532 1111 1233344454 3333 111
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
..-.|++|.+ .+|.....|.++++.+.+++|+|+|..|+..+|+++ .++|.+=...+..++..+.
T Consensus 456 -------d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRiW~if~s~~~vEtl~i~---- 520 (893)
T KOG0291|consen 456 -------DSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRIWDIFSSSGTVETLEIR---- 520 (893)
T ss_pred -------ceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEEEEeeccCceeeeEeec----
Confidence 1236899986 344445666889999999999999999999999987 7888775554323333332
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.++.. ++|+|||+.|+....
T Consensus 521 sdvl~------vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 521 SDVLA------VSFRPDGKELAVATL 540 (893)
T ss_pred cceeE------EEEcCCCCeEEEEEe
Confidence 22222 889999999998874
No 132
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.26 E-value=6.8e-12 Score=129.90 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=104.4
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.+..| ++||.|++ .+..|+|.+.... .......+|+.++++.+ ..+++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIA---FDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDAL------GIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEE---EECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHT------TTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEE---EecCCccccccccccCCcchhhhhhhhhhccccc------ccccccccccccccccccccccc
Confidence 45555 58999999 5666788775532 22344555665555443 22689999999999999999999
Q ss_pred CCCcccEEEEeccCCCCCCCC--C---CCcc---------cc---chh---hhc-----------HHH--------HHhc
Q 002194 780 APHLFCCGIARSGAYNRTLTP--F---GFQN---------ED---RTL---WEA-----------TST--------YVEM 820 (954)
Q Consensus 780 ~p~~~~a~v~~~~~~~~~~~~--~---~~~~---------~~---~~~---~~~-----------~~~--------~~~~ 820 (954)
+|++++++|+++|........ . .+.. .. ... +.. .+. +...
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876421100 0 0000 00 000 000 000 0112
Q ss_pred CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 821 sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+....+.++++|+++++|++|..++ .+..+++.+.+ .+++++++|++||...
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~----~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKL----PNAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHS----TTEEEEEETTSSSTHH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHC----CCCEEEEECCCCCccH
Confidence 3334567789999999999999987 66666666554 3479999999999863
No 133
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.26 E-value=8.1e-10 Score=122.11 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=121.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch------hhHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (954)
.|.||++||.+.... .| . ..+..| +.+|.|++ .+..|+|.+..+. .......+|+
T Consensus 127 ~~~ivllHG~~~~~~-----------~w---~-~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQAY-----------SY---R-KVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCHH-----------HH---H-HHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 478999999642110 11 1 223334 56899999 6777888875432 1244556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCC--CCCC------------Ccc----
Q 002194 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFG------------FQN---- 805 (954)
Q Consensus 744 ~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~--~~~~------------~~~---- 805 (954)
.+.++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +..
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6665554 235799999999999999999999999999999997642110 0000 000
Q ss_pred ----------------ccchhhhc------------HHHHHhcC-cc-------c---ccCCCCCCEEEEEeCCCCCCCC
Q 002194 806 ----------------EDRTLWEA------------TSTYVEMS-PF-------M---SANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 806 ----------------~~~~~~~~------------~~~~~~~s-p~-------~---~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
+....+.. ...+..+. .. . ...++++|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 00000000 00001100 00 0 013468999999999999987
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
....+++.+.. +.++.++|+++|... .+..+.+.+.|.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 358889999999874 5777888888888875
No 134
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.26 E-value=2.9e-10 Score=131.14 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=91.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC------CC--Cce--------eecccCCCccccccccceeEe
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV------DT--GKA--------RPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~------~~--g~~--------~~lt~~~~~~~~~~~~~~~ws 252 (954)
+.+..++|||||+++|+.+ ++....||-.+. -+ |.. ..+..... ..+.++.|+
T Consensus 70 ~sv~CVR~S~dG~~lAsGS-------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----~DV~Dv~Ws 138 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGS-------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----SDVLDVNWS 138 (942)
T ss_pred CceeEEEECCCCCeEeecc-------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCC----CccceeccC
Confidence 3688889999999999954 223444555552 10 111 11111111 126789999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCC
Q 002194 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP 330 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~ 330 (954)
||+.+++.. +. ...|.+++. +.+ .+.+..
T Consensus 139 p~~~~lvS~---------------------s~----------------------------DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 139 PDDSLLVSV---------------------SL----------------------------DNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred CCccEEEEe---------------------cc----------------------------cceEEEEccccceeeeeeec
Confidence 999999866 11 123556666 554 333433
Q ss_pred C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeecc
Q 002194 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp 408 (954)
. ..+-++.|.|=||++|..+.++ .+.+|.+.. +-.+.++. +..+- ......+.++|||
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~-pf~~~------~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITK-PFEES------PLTTFFLRLSWSP 229 (942)
T ss_pred ccccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeecc-chhhC------CCcceeeecccCC
Confidence 4 7788999999999999998654 888998664 33444444 22110 1112235789999
Q ss_pred CCCCceEE
Q 002194 409 DKPSTLYW 416 (954)
Q Consensus 409 Dg~~i~~~ 416 (954)
||+.|+..
T Consensus 230 DG~~las~ 237 (942)
T KOG0973|consen 230 DGHHLASP 237 (942)
T ss_pred CcCeecch
Confidence 99987764
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.9e-10 Score=117.82 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=158.7
Q ss_pred eceEEEEccCCCCCCceeeeecCC-CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
..+.|+.+ ||...+ .|+.+- ....+....|+|+|+..+|++. -..-+|.+|+.+.+..++-...+..
T Consensus 235 ~~lrifqv--DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~--------rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 235 GTLRIFQV--DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG--------RRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CcEEEEEe--cCccCh--hheeeeeccCccceeeecCCCceEEEecc--------cceEEEEeeccccccccccCCCCcc
Confidence 57788888 653322 333221 1226778899999996666543 2567899999998887775543321
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
...+..+..|||++.|++.. ..+.|+++..
T Consensus 303 -~~~~e~FeVShd~~fia~~G-------------------------------------------------~~G~I~lLha 332 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAG-------------------------------------------------NNGHIHLLHA 332 (514)
T ss_pred -cchhheeEecCCCCeEEEcc-------------------------------------------------cCceEEeehh
Confidence 22366889999999998761 2346777777
Q ss_pred -CCce-eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc
Q 002194 322 -DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 322 -~G~~-~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~ 398 (954)
+++. ..+.-.+.+.+++||.||+.|+.+... ++||+||+....+ ++..... .
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G-~----------- 387 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDG-S----------- 387 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecC-c-----------
Confidence 6642 223333788899999999998887633 3899999986543 3322211 0
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCC-CCCCCceEEe---ecccccCceeeccCCceEEEEE
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP-VQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~ 474 (954)
....++.-|++|..++.- +..+.|-+|+.+. ..+..++++. .....+.++.|++|++.|+.++
T Consensus 388 v~gts~~~S~ng~ylA~G-------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATG-------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEec-------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 122467888999855443 3355555665211 2344555553 3344678899999999999887
Q ss_pred eccccceEEEEEcCCCCCCCcEEEecCC-----CCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 475 WYKTRRTRTWVISPGSKDVAPRILFDRS-----SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.......+|..++..+ +..+-+ ...+.. +.|||.|.++++..
T Consensus 455 ~~~knalrLVHvPS~T------VFsNfP~~n~~vg~vtc------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVPSCT------VFSNFPTSNTKVGHVTC------MAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecccee------eeccCCCCCCcccceEE------EEecCCCceEEeec
Confidence 6554335565554332 221111 111122 78999999998875
No 136
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.24 E-value=8.5e-09 Score=113.77 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=137.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-CCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~ 241 (954)
..|.+|++.++| ..+.+..++.+......++||||++|+.... . ...|..++++ .|+...+......
T Consensus 12 ~~I~~~~~~~~g---~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~--~~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 12 QQIHVWNLNHEG---ALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------P--EFRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred CCEEEEEECCCC---ceeeeeEEecCCCCccEEECCCCCEEEEEEC------C--CCcEEEEEECCCCceEEeeeecCC-
Confidence 478899985433 2233322333335677899999998766432 1 3445444443 4443322211111
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
.....++++|||+.|+.+.. ....|..+++
T Consensus 80 --~~p~~i~~~~~g~~l~v~~~------------------------------------------------~~~~v~v~~~ 109 (330)
T PRK11028 80 --GSPTHISTDHQGRFLFSASY------------------------------------------------NANCVSVSPL 109 (330)
T ss_pred --CCceEEEECCCCCEEEEEEc------------------------------------------------CCCeEEEEEE
Confidence 01347889999999987611 1223555555
Q ss_pred --CCcee---EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccc
Q 002194 322 --DGTVK---EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAF 394 (954)
Q Consensus 322 --~G~~~---~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~ 394 (954)
+|... ..... ......+++|||+++++..... ..|.+||++. +.......... ..+
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------------~~v~v~d~~~~g~l~~~~~~~~--~~~--- 172 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------------DRIRLFTLSDDGHLVAQEPAEV--TTV--- 172 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------------CEEEEEEECCCCcccccCCCce--ecC---
Confidence 34221 11111 2345567999999998776432 3899999974 32221100000 000
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---c------cccCceeecc
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---D------LRYGGISWCD 465 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~------~~~~~~~~sp 465 (954)
...+++.++|+|||+.++.. +. ..+.|.+|++++ .+++.+.+... . .....+.++|
T Consensus 173 --~g~~p~~~~~~pdg~~lyv~-~~-----------~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 173 --EGAGPRHMVFHPNQQYAYCV-NE-----------LNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred --CCCCCceEEECCCCCEEEEE-ec-----------CCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 01345789999999966554 21 245777777621 12333322111 0 0112477999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCC-CccCCCCCCCeeeccCCcEEEEEE
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
||++|+.+ +.......+|.++.+++ ..+.+-..... ... .+.++|||++|+...
T Consensus 238 dg~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~~p~------~~~~~~dg~~l~va~ 292 (330)
T PRK11028 238 DGRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTETQPR------GFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccccCC------ceEECCCCCEEEEEE
Confidence 99988776 33332355565655543 11211111111 111 178999999988765
No 137
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.23 E-value=1e-08 Score=109.06 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=55.5
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe---ecccccCceeeccCCceEEEEEec
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
-++.+.|||||++.+-. +..+.++++|= .+|.+...|. .+.+.+..++||||+++++..+.+
T Consensus 192 FV~~VRysPDG~~Fat~-------------gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATA-------------GSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred ceeeEEECCCCCeEEEe-------------cCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 45678899999976554 45668999982 4455555665 456778889999999999998877
Q ss_pred cccceEEEEEcCCC
Q 002194 477 KTRRTRTWVISPGS 490 (954)
Q Consensus 477 ~~~~~~l~~~d~~~ 490 (954)
+. .+||.+....
T Consensus 257 kt--~KIWdVs~~s 268 (603)
T KOG0318|consen 257 KT--IKIWDVSTNS 268 (603)
T ss_pred ce--EEEEEeeccc
Confidence 65 7788877653
No 138
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.23 E-value=3.2e-10 Score=125.99 Aligned_cols=67 Identities=19% Similarity=0.077 Sum_probs=52.8
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE-eCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI-LPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.+.+|++|+|+|+|+.|..+| +..++++.+.+......++++. ++++||... .+..+.+.+.+.+||
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL 350 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFL 350 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHh
Confidence 456788999999999999998 8999999998877644444444 468999874 566777888888886
No 139
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.23 E-value=1.1e-09 Score=107.66 Aligned_cols=234 Identities=12% Similarity=0.103 Sum_probs=145.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..+.+|+||++.+..+.+ ..+++||+.+ | ...+++-+++ .
T Consensus 65 ~v~dv~~s~dg~~alS~swD---------------------------------~~lrlWDl~~-g--~~t~~f~GH~--~ 106 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWD---------------------------------GTLRLWDLAT-G--ESTRRFVGHT--K 106 (315)
T ss_pred EecceEEccCCceEEecccc---------------------------------ceEEEEEecC-C--cEEEEEEecC--C
Confidence 56788899999888877775 5899999965 2 3345565543 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC--eEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS--TLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG--~~l~~~~~~~~~ 267 (954)
.+..+++|||.++|+..++ ...|-++++.|+....+....+..+ +.-+.|+|.. -+|+.+
T Consensus 107 dVlsva~s~dn~qivSGSr---------DkTiklwnt~g~ck~t~~~~~~~~W---VscvrfsP~~~~p~Ivs~------ 168 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSR---------DKTIKLWNTLGVCKYTIHEDSHREW---VSCVRFSPNESNPIIVSA------ 168 (315)
T ss_pred ceEEEEecCCCceeecCCC---------cceeeeeeecccEEEEEecCCCcCc---EEEEEEcCCCCCcEEEEc------
Confidence 7899999999999998543 5677777887776666655542222 7788999985 344422
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcC--CCccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIG--PPAVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~--~~~~~~~~~~SpDGk 344 (954)
+ ....+-++|+.+ +.+... ..+.+..+++||||.
T Consensus 169 ---------------s----------------------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 169 ---------------S----------------------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred ---------------c----------------------------CCceEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 1 112344556633 333322 227778899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.+++... ++++.+||++.++. +...+.. .-+.++.|+|+--.|... .
T Consensus 206 lcasGgk-------------dg~~~LwdL~~~k~--lysl~a~-----------~~v~sl~fspnrywL~~a---t---- 252 (315)
T KOG0279|consen 206 LCASGGK-------------DGEAMLWDLNEGKN--LYSLEAF-----------DIVNSLCFSPNRYWLCAA---T---- 252 (315)
T ss_pred EEecCCC-------------CceEEEEEccCCce--eEeccCC-----------CeEeeEEecCCceeEeec---c----
Confidence 9887442 34899999995432 2222211 234689999965332222 1
Q ss_pred ccccccCCCeEEEEecCCCCCCC-ceEEe----e-----cccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEG-PEILH----K-----LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-~~~l~----~-----~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
...|-+|++ +++. ...|. . .+-..-+++||+||..|+..-.++. .++|.+.
T Consensus 253 -------~~sIkIwdl---~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~--irv~qv~ 313 (315)
T KOG0279|consen 253 -------ATSIKIWDL---ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV--IRVWQVA 313 (315)
T ss_pred -------CCceEEEec---cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc--EEEEEee
Confidence 123666665 3222 22221 1 1223346899999999987654443 6676653
No 140
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.23 E-value=1e-10 Score=129.41 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=110.3
Q ss_pred HHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCcccE
Q 002194 708 WLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCC 786 (954)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (954)
|.+.+|.|+++ |.+|+|.+...........+|+.+.++.+ +-++ +.++||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~~---Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAF---DFIGADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEE---eCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 33568999994 44566655332222344566666555544 2234 57999999999999999999999999
Q ss_pred EEEeccCCCCCCCC--CC------------------------------Ccc-c-cchhhh------------cHH-----
Q 002194 787 GIARSGAYNRTLTP--FG------------------------------FQN-E-DRTLWE------------ATS----- 815 (954)
Q Consensus 787 ~v~~~~~~~~~~~~--~~------------------------------~~~-~-~~~~~~------------~~~----- 815 (954)
+|++++........ +. +.. . ....+. ...
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998643210000 00 000 0 000000 000
Q ss_pred ----HHHhcCc-------------ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCCcC
Q 002194 816 ----TYVEMSP-------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGY 877 (954)
Q Consensus 816 ----~~~~~sp-------------~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~ 877 (954)
.....++ ...+.++++|+|+++|++|..+| +..+.++.+.+.. ..+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~p---~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLGP---RGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcCC---CCeEEEEeCCccHHH
Confidence 0000000 01246788999999999999998 8888887776632 358889985 89987
Q ss_pred CCcccHHHHHHHHHHHHHHh
Q 002194 878 AARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~ 897 (954)
. .+..+.+.+.+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 4 567788889999998763
No 141
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-08 Score=102.76 Aligned_cols=253 Identities=15% Similarity=0.183 Sum_probs=160.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....||+||..++.++. ...|.++|...|+..+.......+ +.-+.|......+.+++
T Consensus 15 ~~i~sl~fs~~G~~litss~---------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sS------ 75 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE---------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSS------ 75 (311)
T ss_pred CceeEEEecCCCCEEEEecC---------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEcc------
Confidence 46888999999999988552 447777888777766665555432 66777886665555541
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
+ . ....|..+++ +.+-.+...+ ..+.++..||-+..
T Consensus 76 ---------------t-----------------k---------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 76 ---------------T-----------------K---------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred ---------------C-----------------C---------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 1 1 1234667788 6654444444 78889999998877
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
.+-++.+ ..|.+||+...+..-+.... +..-.+|.|.| ++|.+.
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~G--LifA~~------- 158 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEG--LIFALA------- 158 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecC--------------CCcceeECCCC--cEEEEe-------
Confidence 7766644 38999999865443333221 22346799988 444421
Q ss_pred cccccCCCeEEEEecCCCCCCCceEE--e-ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEIL--H-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l--~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
.+.+.|-++|+.-.+.+.-... . ........+.|||||+.|+.+.+. ..++++|.-.|. ...-+...
T Consensus 159 ----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~--~~~tfs~~ 228 (311)
T KOG1446|consen 159 ----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGT--VKSTFSGY 228 (311)
T ss_pred ----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCc--EeeeEeec
Confidence 2234677777633344433333 2 123344678999999999998654 458889987763 22222222
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccC
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 571 (954)
..... . .-...|+|||+.+.-.. +..+|++|++++|++...+...
T Consensus 229 ~~~~~-~--~~~a~ftPds~Fvl~gs---------------------~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 229 PNAGN-L--PLSATFTPDSKFVLSGS---------------------DDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cCCCC-c--ceeEEECCCCcEEEEec---------------------CCCcEEEEEcCCCcEeeEecCC
Confidence 11100 0 01157999999988776 2235999999999988888765
No 142
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.21 E-value=3.7e-11 Score=126.99 Aligned_cols=214 Identities=26% Similarity=0.351 Sum_probs=121.8
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCC-cc-cHHHHHHHHCC----cEEEEcCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IG-STSVLLWLARG----FAILGGPTTP 722 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~la~~G----~~V~~~~~~~ 722 (954)
|..+..++|+|++|++.+ ++|+|+++||.. .+.. .. ......++..| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~~~--~~PvlylldG~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSK--PYPVLYLLDGQS---------------GWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGTTT--TEEEEEEESHTT---------------HHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCCCC--CCEEEEEccCCc---------------cccccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 678899999999984444 699999999930 0100 00 11222234443 3444422212
Q ss_pred CC-CCCC--------cc-----cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 723 II-GEGD--------EE-----ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 723 ~~-G~G~--------~~-----~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
.. .++. .. ....+.....+ +.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLTE---ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHT---HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehhc---cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 11 1100 00 01122222333 55666777777777779999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCccccchhhhcHHHHHhcCccccc-----CCCCCCEEEEEeCCCCCCCC--------chHHHHHHH
Q 002194 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSA-----NKLKKPILLVHGEEDNNSGT--------LTMQSDRFF 855 (954)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~~~~P~Lii~G~~D~~v~~--------~~~~~~~~~ 855 (954)
+++|.++.....|+. .. ...|...++...+ ..-..++++.+|+.|..... .....+++.
T Consensus 145 ~~S~~~~~~~~~w~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~ 216 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SD------DEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELA 216 (251)
T ss_dssp EESEESETTHCHHHH--ST------CGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHH
T ss_pred ccCccccccccccCc--CC------cHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhH
Confidence 999976643111111 01 1112222222211 22346799999999984210 012334444
Q ss_pred HHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 856 NALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.|+..|.+..+..++| +|.+.. ....+...+.||
T Consensus 217 ~~l~~~g~~~~~~~~~G-~H~~~~---W~~~l~~~L~~~ 251 (251)
T PF00756_consen 217 QLLKAKGIPHTYHVFPG-GHDWAY---WRRRLPDALPWM 251 (251)
T ss_dssp HHCCCEECTTESEEEHS-ESSHHH---HHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEecC-ccchhh---HHHHHHHHHhhC
Confidence 55556677888888885 786532 334444555553
No 143
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=8.3e-10 Score=126.25 Aligned_cols=275 Identities=18% Similarity=0.186 Sum_probs=182.4
Q ss_pred CCCCCceecCCCCEEEEEecCCCCC-----------ccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPP-----------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~ 177 (954)
..+....|||||+.++....+.... +..+..+...+..+.+++++......+.+..|+||+++.++ .
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~ 237 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--R 237 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--e
Confidence 3455678999999999986663322 23334455556678888888777777777899999995433 2
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
..+.+.+++ ..+....|+|+|+.|+..+ ....+.++|+.+++..+........ +..+.+++||..
T Consensus 238 ~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs---------~D~tvriWd~~~~~~~~~l~~hs~~----is~~~f~~d~~~ 302 (456)
T KOG0266|consen 238 NLKTLKGHS--TYVTSVAFSPDGNLLVSGS---------DDGTVRIWDVRTGECVRKLKGHSDG----ISGLAFSPDGNL 302 (456)
T ss_pred EEEEecCCC--CceEEEEecCCCCEEEEec---------CCCcEEEEeccCCeEEEeeeccCCc----eEEEEECCCCCE
Confidence 344555443 4789999999997777644 3556777777777776665555433 778999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce---eEcCCC--
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPP-- 331 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~---~~l~~~-- 331 (954)
|+... ....|.++|+ +|.. ..+...
T Consensus 303 l~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 303 LVSAS-------------------------------------------------YDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred EEEcC-------------------------------------------------CCccEEEEECCCCceeeeecccCCCC
Confidence 98651 1234677788 7762 233333
Q ss_pred c-cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 A-VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~-~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
. .+....|||+|++|+....++ .+.+|++... ..+....+.... .....+..+++
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 390 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDR-------------TLKLWDLRSGKSVGTYTGHSNLV----------RCIFSPTLSTG 390 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCC-------------eEEEEEccCCcceeeecccCCcc----------eeEecccccCC
Confidence 2 468899999999999988443 8889999844 344444333210 01123344677
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
|+.++.. .....|++|+. .++.....+..+ ...+..+.|+|....++..+.......++|..+
T Consensus 391 ~~~i~sg-------------~~d~~v~~~~~--~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSG-------------SEDGSVYVWDS--SSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEE-------------eCCceEEEEeC--CccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 7765554 34567889986 334445555555 566778899999999998875444345666543
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=108.59 Aligned_cols=282 Identities=15% Similarity=0.158 Sum_probs=157.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeee-cCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ-GFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt-~~~~~ 188 (954)
.++.+.||.||++||..+.+ ..|.||++.+ =+..+.+-+. +.+-+
T Consensus 88 ~vt~~~FsSdGK~lat~~~D---------------------------------r~Ir~w~~~D-F~~~eHr~~R~nve~d 133 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGD---------------------------------RSIRLWDVRD-FENKEHRCIRQNVEYD 133 (420)
T ss_pred ceeeeEEcCCCceeEEEeCC---------------------------------ceEEEEecch-hhhhhhhHhhccccCC
Confidence 68899999999999999886 5789999853 2112222221 12211
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC----CCceeecccCCCcc----ccccccceeEecCCeEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD----TGKARPLFQSPDIY----LNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~----~g~~~~lt~~~~~~----~~~~~~~~~wspDG~~l~~ 260 (954)
....++|+||-+.+++...+ ...|+++-.. |+-.-..+....-. ....+.++.....+++|..
T Consensus 134 -hpT~V~FapDc~s~vv~~~~--------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims 204 (420)
T KOG2096|consen 134 -HPTRVVFAPDCKSVVVSVKR--------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS 204 (420)
T ss_pred -CceEEEECCCcceEEEEEcc--------CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE
Confidence 45667999999999987642 3455555432 22111111111000 0111223444455555554
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEcCCC-ccccccc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP-AVYTSLD 338 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~~-~~~~~~~ 338 (954)
.+ ....|.++++.|+ +..+..+ ......+
T Consensus 205 as-------------------------------------------------~dt~i~lw~lkGq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 205 AS-------------------------------------------------LDTKICLWDLKGQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred ec-------------------------------------------------CCCcEEEEecCCceeeeecccccccccee
Confidence 31 1234677777553 3444433 4556788
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEecc---CceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD---GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~---g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
.||||++|+... |+.++.+|.+- .+..+.+.. -+...++..++..++||+++++++-
T Consensus 236 vSP~GRFia~~g-------------FTpDVkVwE~~f~kdG~fqev~r-------vf~LkGH~saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 236 VSPDGRFIAVSG-------------FTPDVKVWEPIFTKDGTFQEVKR-------VFSLKGHQSAVLAAAFSNSSTRAVT 295 (420)
T ss_pred eCCCCcEEEEec-------------CCCCceEEEEEeccCcchhhhhh-------hheeccchhheeeeeeCCCcceeEE
Confidence 999999999887 44488888753 222222111 1122244566778999999998776
Q ss_pred EEEeccCCCccccccCCCeEEEEecCC--CCCCCceEE-------eecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEP--VQGEGPEIL-------HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~g~~~~~l-------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
. +..+.+.+||.+- ..+..++.| .......-.+..||.|+.|+.+.. +.|-++
T Consensus 296 v-------------SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-----s~l~~~ 357 (420)
T KOG2096|consen 296 V-------------SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-----SDLKVF 357 (420)
T ss_pred E-------------ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-----CceEEE
Confidence 5 3334444554310 012333333 112222335789999999988742 346666
Q ss_pred cCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 487 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....|... ..+.+...+.+.. ++|++||++++...
T Consensus 358 ~se~g~~~-~~~e~~h~~~Is~------is~~~~g~~~atcG 392 (420)
T KOG2096|consen 358 ASEDGKDY-PELEDIHSTTISS------ISYSSDGKYIATCG 392 (420)
T ss_pred EcccCccc-hhHHHhhcCceee------EEecCCCcEEeeec
Confidence 65554211 1222333333333 89999999998765
No 145
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.20 E-value=9e-09 Score=101.80 Aligned_cols=255 Identities=12% Similarity=0.137 Sum_probs=160.5
Q ss_pred eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEE
Q 002194 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (954)
Q Consensus 179 ~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l 258 (954)
.+.|.++ ...+....|++|+++|+-.+. ...|.++|.-+.......+.+..+ +-.++++|.|+.|
T Consensus 48 rr~LkGH--~~Ki~~~~ws~Dsr~ivSaSq---------DGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~V 112 (343)
T KOG0286|consen 48 RRTLKGH--LNKIYAMDWSTDSRRIVSASQ---------DGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNFV 112 (343)
T ss_pred EEEeccc--ccceeeeEecCCcCeEEeecc---------CCeEEEEEcccccceeEEecCcee----EEEEEECCCCCeE
Confidence 3455553 357999999999999998764 567888888776555555556654 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe---CC---ceeEcCCC-
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG---TVKEIGPP- 331 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~---~G---~~~~l~~~- 331 (954)
++..-+ ..-.||.+.. +| ..+.+...
T Consensus 113 AcGGLd-----------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 113 ACGGLD-----------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred EecCcC-----------------------------------------------ceeEEEecccccccccceeeeeecCcc
Confidence 976100 1122444432 22 12334444
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeecc-CC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS-DK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp-Dg 410 (954)
+......|-+|+. |+..+.+ .+.-+||+++++...... ++.+.+-+++++| |+
T Consensus 146 gylScC~f~dD~~-ilT~SGD-------------~TCalWDie~g~~~~~f~------------GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 146 GYLSCCRFLDDNH-ILTGSGD-------------MTCALWDIETGQQTQVFH------------GHTGDVMSLSLSPSDG 199 (343)
T ss_pred ceeEEEEEcCCCc-eEecCCC-------------ceEEEEEcccceEEEEec------------CCcccEEEEecCCCCC
Confidence 5666677777664 4554422 278899999765444332 2223456788999 77
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+..+-- +-....++||+ .++.-.+....++.+++.+.|-|+|..++..+++.. -+||.+..+.
T Consensus 200 ntFvSg-------------~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t--cRlyDlRaD~ 262 (343)
T KOG0286|consen 200 NTFVSG-------------GCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT--CRLYDLRADQ 262 (343)
T ss_pred CeEEec-------------ccccceeeeec--cCcceeEeecccccccceEEEccCCCeeeecCCCce--eEEEeecCCc
Confidence 743322 12335567775 355455566788999999999999999888876655 6788776654
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
. ..++.... ... +-..+.||..|+.|+.... .....+||.=.++..-+
T Consensus 263 ~----~a~ys~~~-~~~---gitSv~FS~SGRlLfagy~---------------------d~~c~vWDtlk~e~vg~ 310 (343)
T KOG0286|consen 263 E----LAVYSHDS-IIC---GITSVAFSKSGRLLFAGYD---------------------DFTCNVWDTLKGERVGV 310 (343)
T ss_pred E----EeeeccCc-ccC---CceeEEEcccccEEEeeec---------------------CCceeEeeccccceEEE
Confidence 2 33333221 111 1112789999988777652 22488999766654433
No 146
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.20 E-value=9.1e-10 Score=123.24 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=59.0
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+|++|+|+|+|+.|..+| ++.++++.+.+...+..+++++++ ++||... .+....+.+.+.+||.+.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERA 374 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhh
Confidence 346789999999999999998 899999999998877777888775 8999874 566678888999998874
No 147
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.20 E-value=3.1e-10 Score=126.50 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=141.2
Q ss_pred CceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe
Q 002194 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (954)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~ 256 (954)
+..+.+.++ .+.+...+||||.+.|+-++ .+....||.++.. .......++. +.+..+.|+|-|-
T Consensus 442 ~~~~~L~GH--~GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~t~--s~~V~y~GH~----~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 442 GTSRTLYGH--SGPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLDTW--SCLVIYKGHL----APVWDVQFAPRGY 506 (707)
T ss_pred ceeEEeecC--CCceeeeeecccccceeecc-------CCcceeeeecccc--eeEEEecCCC----cceeeEEecCCce
Confidence 455567664 36799999999999998866 4456677766643 3332322222 2366888999997
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-cccc
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYT 335 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~ 335 (954)
+++.+ +.+ .+.+||..|-....+-+..+ ..+.
T Consensus 507 YFata---------------------s~D--------------------------~tArLWs~d~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 507 YFATA---------------------SHD--------------------------QTARLWSTDHNKPLRIFAGHLSDVD 539 (707)
T ss_pred EEEec---------------------CCC--------------------------ceeeeeecccCCchhhhcccccccc
Confidence 66654 111 34457777654444444444 6667
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
-+.|.|+..+++..+.+ .++.+||+.++...++.. ++...+..++|||+|+.|+-
T Consensus 540 cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~------------GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFT------------GHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEec------------CCCCceEEEEEcCCCceEee
Confidence 78999999999987644 389999998665544443 22244578999999997766
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
. +..+.|.+||+ ..+....++..+...+.+++||.||..||..+.+.. .+||.+.
T Consensus 595 g-------------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns--V~lWD~~ 649 (707)
T KOG0263|consen 595 G-------------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS--VRLWDLT 649 (707)
T ss_pred c-------------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe--EEEEEch
Confidence 5 45668899997 344445666667788899999999999998866554 7788544
No 148
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.1e-09 Score=122.85 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=150.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc---eeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.+....+||||+.++.... ...+.++++.+++ .+.+ .. ....+..++|+|||+.|+...
T Consensus 161 sv~~~~fs~~g~~l~~~~~---------~~~i~~~~~~~~~~~~~~~l-~~----h~~~v~~~~fs~d~~~l~s~s---- 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS---------DGLIRIWKLEGIKSNLLREL-SG----HTRGVSDVAFSPDGSYLLSGS---- 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccC---------CCcEEEeecccccchhhccc-cc----cccceeeeEECCCCcEEEEec----
Confidence 5666899999999888652 3344444444544 2222 11 222378999999999887651
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCc-eeEcCCC-ccccccccCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGT-VKEIGPP-AVYTSLDPSPD 342 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~-~~~l~~~-~~~~~~~~SpD 342 (954)
...+|.++++ ++. .+.+... ..+...+|+|+
T Consensus 223 ---------------------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~ 257 (456)
T KOG0266|consen 223 ---------------------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD 257 (456)
T ss_pred ---------------------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence 1234556666 333 4445444 77899999999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|+.|+..+.+ ..+.+||+.+++. +.+..+. .++..++|++||+.++..
T Consensus 258 g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~----- 306 (456)
T KOG0266|consen 258 GNLLVSGSDD-------------GTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA----- 306 (456)
T ss_pred CCEEEEecCC-------------CcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc-----
Confidence 9777777643 3899999997554 4444432 456789999999976655
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCc---eEEeeccc--ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDL--RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~--~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+..+.|.+||+ .++.. +.+...+. .+..+.|+|+|++|+....+.. .++|.+.... . .
T Consensus 307 --------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--~~~w~l~~~~---~-~ 369 (456)
T KOG0266|consen 307 --------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--LKLWDLRSGK---S-V 369 (456)
T ss_pred --------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe--EEEEEccCCc---c-e
Confidence 44668999996 55552 34433333 3678999999999998865543 5566554322 1 2
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
..........+.. .. ...+++|++++.... ...++.||+.++.....
T Consensus 370 ~~~~~~~~~~~~~-~~--~~~~~~~~~i~sg~~---------------------d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 370 GTYTGHSNLVRCI-FS--PTLSTGGKLIYSGSE---------------------DGSVYVWDSSSGGILQR 416 (456)
T ss_pred eeecccCCcceeE-ec--ccccCCCCeEEEEeC---------------------CceEEEEeCCccchhhh
Confidence 2222222111100 01 334778888777662 22499999987655433
No 149
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.20 E-value=4.2e-10 Score=118.26 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=111.6
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchh-hHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR-FVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~-~~~~~~~D~~~av~ 748 (954)
.|.||++||.+.... .| . .....| .+|.|++ .+.+|+|.+..... ......+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~~-----------~w---~-~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ-----------DW---Q-PVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCChH-----------HH---H-HHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 367999999642211 11 1 233334 4799999 66678887754321 23344455544444
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCC-----------CCC--Ccccc-------
Q 002194 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT-----------PFG--FQNED------- 807 (954)
Q Consensus 749 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~-----------~~~--~~~~~------- 807 (954)
.+ +.+++.++||||||.+++.++.++|+ +++++|+.++....... .+. +....
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 34689999999999999999999865 49999887654321100 000 00000
Q ss_pred ---chh-----hhcHHHH----------------Hhc------CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHH
Q 002194 808 ---RTL-----WEATSTY----------------VEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (954)
Q Consensus 808 ---~~~-----~~~~~~~----------------~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~ 857 (954)
... ......+ ... +....+.++++|+|+++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 000 0000000 000 1112456789999999999997531 1 2221
Q ss_pred HHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
. +.++++++++||.+. .+..+.+.+.|.+||.+
T Consensus 209 ---~--~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 ---L--ALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred ---h--cCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1 468899999999874 67778888889888864
No 150
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=4.7e-09 Score=102.12 Aligned_cols=271 Identities=8% Similarity=0.066 Sum_probs=159.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+.+++|.-||.+||..+.+ ..+.+|++..+ ...+.+....++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~d---------------------------------ktv~v~n~e~~---r~~~~~~~~gh~ 64 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFD---------------------------------KTVSVWNLERD---RFRKELVYRGHT 64 (313)
T ss_pred hcceEEEEcccCceeeecccC---------------------------------CceEEEEecch---hhhhhhcccCCC
Confidence 357789999999999988775 45678887432 111222221223
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+-...|+|-..-++++.. +...|.++|...++....+....+. ....|+|||+.+++..
T Consensus 65 ~svdql~w~~~~~d~~atas--------~dk~ir~wd~r~~k~~~~i~~~~en-----i~i~wsp~g~~~~~~~------ 125 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATAS--------GDKTIRIWDIRSGKCTARIETKGEN-----INITWSPDGEYIAVGN------ 125 (313)
T ss_pred cchhhheeCCCCCcceEEec--------CCceEEEEEeccCcEEEEeeccCcc-----eEEEEcCCCCEEEEec------
Confidence 36778899986655555432 4567778888888887666555442 2678999999999871
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
....|-.+|. +-++..-.+. .......|+-++. +
T Consensus 126 -------------------------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~ 161 (313)
T KOG1407|consen 126 -------------------------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-L 161 (313)
T ss_pred -------------------------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCC-E
Confidence 1123445555 3332222222 4455677775554 4
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.|..+.. +.+.|..-. ..+++.... .+..+.--+.|+|||++++.-
T Consensus 162 Fflt~Gl------------G~v~ILsyp--sLkpv~si~----------AH~snCicI~f~p~GryfA~G---------- 207 (313)
T KOG1407|consen 162 FFLTNGL------------GCVEILSYP--SLKPVQSIK----------AHPSNCICIEFDPDGRYFATG---------- 207 (313)
T ss_pred EEEecCC------------ceEEEEecc--ccccccccc----------cCCcceEEEEECCCCceEeec----------
Confidence 4444232 134333322 122222211 122333458999999976664
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE-ecCCCCC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSED 505 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~ 505 (954)
+....+-+||++ +=--.|.++..++.++.++||-||+.|+.++++. -|=+.++.+|+ ..-.+ .+.+
T Consensus 208 ---sADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~vetGd-~~~eI~~~~~--- 274 (313)
T KOG1407|consen 208 ---SADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEVETGD-RVWEIPCEGP--- 274 (313)
T ss_pred ---cccceeeccChh--HhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEecccCC-eEEEeeccCC---
Confidence 334466788851 1112367788899999999999999999887543 13344445542 11111 1111
Q ss_pred ccCCCCCCCeeeccCCcEEEEEEeec
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKIKKE 531 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~~~~ 531 (954)
.+. ++|.|.-..|+|...+.
T Consensus 275 t~t------VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 275 TFT------VAWHPKRPLLAYACDDK 294 (313)
T ss_pred cee------EEecCCCceeeEEecCC
Confidence 222 89999999999998543
No 151
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=109.48 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=136.9
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC----CCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT----PII 724 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~----~~~ 724 (954)
+-.+.--+|+|+.+..+| +.|++.|+-|-. ..+..|..- ..+-+....+|++|+.++.- ...
T Consensus 25 ~c~Mtf~vylPp~a~~~k--~~P~lf~LSGLT-----------CT~~Nfi~K-sg~qq~As~hgl~vV~PDTSPRG~~v~ 90 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGK--RCPVLFYLSGLT-----------CTHENFIEK-SGFQQQASKHGLAVVAPDTSPRGVEVA 90 (283)
T ss_pred ccceEEEEecCCCcccCC--cCceEEEecCCc-----------ccchhhHhh-hhHHHhHhhcCeEEECCCCCCCccccC
Confidence 345667789998876555 499999998842 111112110 01222334589999985541 111
Q ss_pred CCCCc--------cc----chhh------HHHHHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHHhCCCccc
Q 002194 725 GEGDE--------EA----NDRF------VEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFC 785 (954)
Q Consensus 725 G~G~~--------~~----~~~~------~~~~~~D~~~av~~l~-~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~ 785 (954)
|..++ +. .+.| ....+.++.. .|. ..-.+|+.+++|.||||||.-|+....++|.+++
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~---~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kyk 167 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQ---LLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYK 167 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHH---HhccccccccchhcceeccccCCCceEEEEEcCccccc
Confidence 21111 10 0111 1122222222 222 1234899999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCC---CCCEEEEEeCCCCCCCCchHH--HHHHHHHHHh
Q 002194 786 CGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQ--SDRFFNALKG 860 (954)
Q Consensus 786 a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~---~~P~Lii~G~~D~~v~~~~~~--~~~~~~~l~~ 860 (954)
.+-+.+|+.|....+|+-....+..-++...|..+++...++++ ..-+||-+|..|...+ ++ ...+.++.+.
T Consensus 168 SvSAFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~---~qLlPe~l~~a~~~ 244 (283)
T KOG3101|consen 168 SVSAFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA---EQLLPENLLEACKA 244 (283)
T ss_pred ceeccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh---hhcChHHHHHHhhc
Confidence 99999999999888888665556666677777777776655554 4458999999998753 33 3456666664
Q ss_pred CC-CcEEEEEeCCCCCcCC
Q 002194 861 HG-ALCRLVILPFESHGYA 878 (954)
Q Consensus 861 ~g-~~~~~~~~~~~~H~~~ 878 (954)
.. .++.+...+|-+|.+.
T Consensus 245 ~~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 245 TWQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred cccccEEEEeecCCCccee
Confidence 43 6788888999999874
No 152
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=1.7e-09 Score=111.39 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=128.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc--eeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
.+-+..||++|++||..+ .+...-+|.+..++.- ...+..+.. .+..+.||||.+.|+...
T Consensus 226 EVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg----- 288 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACG----- 288 (519)
T ss_pred cEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecC-----
Confidence 588899999999999866 3446778888776641 112222222 267889999999888651
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC---ccccccccCCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~---~~~~~~~~SpDG 343 (954)
....++++|+ +|+.+..... ....+.+|-|||
T Consensus 289 --------------------------------------------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg 324 (519)
T KOG0293|consen 289 --------------------------------------------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG 324 (519)
T ss_pred --------------------------------------------chHheeeccCCcchhhhhcccCcCCCcceeEEccCC
Confidence 1122777888 8877666554 456789999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
.+++..+.+ ..+..||++|.......... . ..+..++.++||+.++..
T Consensus 325 ~~~V~Gs~d-------------r~i~~wdlDgn~~~~W~gvr----~--------~~v~dlait~Dgk~vl~v------- 372 (519)
T KOG0293|consen 325 FRFVTGSPD-------------RTIIMWDLDGNILGNWEGVR----D--------PKVHDLAITYDGKYVLLV------- 372 (519)
T ss_pred ceeEecCCC-------------CcEEEecCCcchhhcccccc----c--------ceeEEEEEcCCCcEEEEE-------
Confidence 998887744 37889999987532221110 0 124568899999987776
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
....++.+++. ....-+.+...+..+.++..|.||+.++..-...+ .+||.+.
T Consensus 373 ------~~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe--i~LWDl~ 425 (519)
T KOG0293|consen 373 ------TVDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQDQE--IHLWDLE 425 (519)
T ss_pred ------ecccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcccCe--eEEeecc
Confidence 22446777764 33333335555667888999999998776544432 5666554
No 153
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.15 E-value=2.3e-09 Score=108.59 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc
Q 002194 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (954)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~ 732 (954)
+..++.|.. .+.+|+||+.||.. +. ..++....+.+|++||+|+.++.....+.+
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------~~------~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------LI------NSWYSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------CC------HHHHHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456778865 45699999999951 11 122345677889999999997754433321
Q ss_pred hhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEeeChHHHHHHHHHHhC-----CCcccEEEEeccCCCCCCC
Q 002194 733 DRFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLT 799 (954)
Q Consensus 733 ~~~~~~~~~D~~~av~~l~~~--~------~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~~~~~~ 799 (954)
....++++.+.++|+.+. . .+|-++++|+|||-||-+|..++..+ +.+|+++|.+.|+-.....
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 145667778888888763 1 25888999999999999999998876 4589999999987422111
Q ss_pred CCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCC---------CCCCchHHHHHHHHHHHhCCCcEEEEEe
Q 002194 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN---------NSGTLTMQSDRFFNALKGHGALCRLVIL 870 (954)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~---------~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (954)
. ... +..+ .+.| ..-+...|+||+-..... ..| .-.+-.+||++++. +....+.
T Consensus 137 ~--~~~--------P~v~-~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP-~g~n~~~Ff~~~~~---p~~~~v~ 199 (259)
T PF12740_consen 137 S--QTE--------PPVL-TYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAP-AGVNYREFFDECKP---PSWHFVA 199 (259)
T ss_pred c--CCC--------Cccc-cCcc--cccCCCCCeEEEecccCcccccccCCCCCC-CCCCHHHHHHhcCC---CEEEEEe
Confidence 0 000 0000 0111 111245899999766663 223 01235788888754 3677778
Q ss_pred CCCCCc
Q 002194 871 PFESHG 876 (954)
Q Consensus 871 ~~~~H~ 876 (954)
.+.||.
T Consensus 200 ~~~GH~ 205 (259)
T PF12740_consen 200 KDYGHM 205 (259)
T ss_pred CCCCch
Confidence 899996
No 154
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.15 E-value=1.9e-09 Score=114.94 Aligned_cols=237 Identities=15% Similarity=0.100 Sum_probs=146.3
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCC-CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
-++.-++..||..+..-++.+..-.. .+.+..|+||++||-...+ ...+-...+.....+||.|+.
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S-------------~~~YVr~lv~~a~~~G~r~VV 159 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGS-------------HESYVRHLVHEAQRKGYRVVV 159 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCC-------------hhHHHHHHHHHHHhCCcEEEE
Confidence 34455666799988888886654321 1223479999999943211 111222344455679999999
Q ss_pred cCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccC
Q 002194 718 GPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (954)
Q Consensus 718 ~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (954)
.+.+ |.|.+.. +.-+-....+|+.++++++.++.- ..++.++|.||||.|...++++..+ .+.|+++++-.
T Consensus 160 fN~R---G~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~P 234 (409)
T KOG1838|consen 160 FNHR---GLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNP 234 (409)
T ss_pred ECCC---CCCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEecc
Confidence 5554 4444432 233334568999999999998842 2489999999999999999987543 24555555544
Q ss_pred CCCCCC-------------------------------------CCCCccccchh-------------h-hcHHHHHhcCc
Q 002194 794 YNRTLT-------------------------------------PFGFQNEDRTL-------------W-EATSTYVEMSP 822 (954)
Q Consensus 794 ~~~~~~-------------------------------------~~~~~~~~~~~-------------~-~~~~~~~~~sp 822 (954)
+|.... .+....+.++. + ...+.|.+.|+
T Consensus 235 wd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs 314 (409)
T KOG1838|consen 235 WDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASS 314 (409)
T ss_pred chhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcch
Confidence 442100 00000000000 0 12366778899
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCc---ccHHHHHHH-HHHHHHHhc
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWE-TDRWLQKYC 898 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~-i~~fl~~~l 898 (954)
..++++|++|+|+|++.+|+++| . ++.-.-... .+..+-+++-.-.||.-.-. .+..-++++ +.+|+....
T Consensus 315 ~~~v~~I~VP~L~ina~DDPv~p--~-~~ip~~~~~--~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 315 SNYVDKIKVPLLCINAADDPVVP--E-EAIPIDDIK--SNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred hhhcccccccEEEEecCCCCCCC--c-ccCCHHHHh--cCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999997 3 333222222 23467777777778953211 134455555 778876654
No 155
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.13 E-value=1.8e-09 Score=115.05 Aligned_cols=195 Identities=10% Similarity=0.104 Sum_probs=113.9
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch---hhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~a 746 (954)
.|.||++||..... ..| ......|.++||.|++ .+..|+|.+.... .......+++.+.
T Consensus 18 ~p~vvliHG~~~~~-----------~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGGS-----------WCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCCc-----------CcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHHHH
Confidence 58899999953211 111 1345567778999999 6667887653221 2233334444444
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC-CCC-------C--------------CCCc
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLT-------P--------------FGFQ 804 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~-~~~-------~--------------~~~~ 804 (954)
++ +.. ..+++.++||||||.++..++.++|++++++|.+++.... ... . +...
T Consensus 80 i~---~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 80 LS---SLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred HH---hcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 33 322 1368999999999999999999999999999998653210 000 0 0000
Q ss_pred c----ccchh---------hh-cH----HHHHh------cCccc------ccCCC-CCCEEEEEeCCCCCCCCchHHHHH
Q 002194 805 N----EDRTL---------WE-AT----STYVE------MSPFM------SANKL-KKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 805 ~----~~~~~---------~~-~~----~~~~~------~sp~~------~~~~~-~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
. ..... +. .+ ..+.. ...+. ...++ ++|+|+|.|++|..+| ++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 00 00 00000 01111 12244 6799999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+.+.+.. .+++.++ +||... .+....+.+.|.+...
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAAA 268 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHHH
Confidence 7776542 2677776 799863 4556666555555443
No 156
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.13 E-value=3.5e-08 Score=108.88 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=141.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
....+++||||++|+..... . ..|.+|++..+|.. ..+...+.+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~----------------------~----------~~i~~~~~~~~g~l---~~~~~~~~~~ 80 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRP----------------------E----------FRVLSYRIADDGAL---TFAAESPLPG 80 (330)
T ss_pred CCccEEECCCCCEEEEEECC----------------------C----------CcEEEEEECCCCce---EEeeeecCCC
Confidence 45578999999988665431 1 25677777533322 2222122223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Cce-eecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~-~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
...+..++|||++|+.+.. . ...|.+++++. |.. ..+...... .....++++|||+.++++..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~------~--~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~~---- 145 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASY------N--ANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPCL---- 145 (330)
T ss_pred CceEEEECCCCCEEEEEEc------C--CCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEeeC----
Confidence 4567899999998876542 1 34555665542 221 111111110 01346779999999987610
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C-Ccee-------EcCCCccccccc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVK-------EIGPPAVYTSLD 338 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~-G~~~-------~l~~~~~~~~~~ 338 (954)
+...|+++++ + |... .+..+.....+.
T Consensus 146 --------------------------------------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 146 --------------------------------------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred --------------------------------------------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 2345777777 3 4332 111224456789
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
|+|||++++..... .+.+.+|+++ ++..+.+..... .|....+. .....+.++|||+.++..
T Consensus 182 ~~pdg~~lyv~~~~------------~~~v~v~~~~~~~~~~~~~~~~~~---~p~~~~~~-~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 182 FHPNQQYAYCVNEL------------NSSVDVWQLKDPHGEIECVQTLDM---MPADFSDT-RWAADIHITPDGRHLYAC 245 (330)
T ss_pred ECCCCCEEEEEecC------------CCEEEEEEEeCCCCCEEEEEEEec---CCCcCCCC-ccceeEEECCCCCEEEEe
Confidence 99999998887632 2388899987 333332222110 01100000 112357899999865554
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+. ..+.|.+++++ .+++..+.+. ........+.++|||++|+.+...++ ...+|.++.+++
T Consensus 246 -~~-----------~~~~I~v~~i~-~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~-~v~v~~~~~~~g 308 (330)
T PRK11028 246 -DR-----------TASLISVFSVS-EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH-HISVYEIDGETG 308 (330)
T ss_pred -cC-----------CCCeEEEEEEe-CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC-cEEEEEEcCCCC
Confidence 11 13466666651 1222222221 12234567899999999988754333 367777776654
No 157
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.12 E-value=2.6e-09 Score=110.07 Aligned_cols=178 Identities=14% Similarity=0.069 Sum_probs=109.7
Q ss_pred HHHHCCcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcc
Q 002194 707 LWLARGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (954)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~ 784 (954)
.|+. ...|.+ +|..|+|++..+.-. .......+.+.++..+..-.+ +++.|+|||+|||+|..+|.++|+++
T Consensus 112 ~La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~L--~KmilvGHSfGGYLaa~YAlKyPerV 185 (365)
T KOG4409|consen 112 DLAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMGL--EKMILVGHSFGGYLAAKYALKYPERV 185 (365)
T ss_pred hhhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcCC--cceeEeeccchHHHHHHHHHhChHhh
Confidence 3444 788888 888899998664211 112222444555544444333 48999999999999999999999999
Q ss_pred cEEEEeccCCCCC---CCC-------CCC-------cccc-----c--hhhh-------cHHHHH---------------
Q 002194 785 CCGIARSGAYNRT---LTP-------FGF-------QNED-----R--TLWE-------ATSTYV--------------- 818 (954)
Q Consensus 785 ~a~v~~~~~~~~~---~~~-------~~~-------~~~~-----~--~~~~-------~~~~~~--------------- 818 (954)
+-+|+++|.--.. ..+ ..+ .... + .+|. .++.+.
T Consensus 186 ~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~Yi 265 (365)
T KOG4409|consen 186 EKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYI 265 (365)
T ss_pred ceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHH
Confidence 9999999742110 000 000 0000 0 0000 000000
Q ss_pred ------------------------hcCcccccCCCC--CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002194 819 ------------------------EMSPFMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (954)
Q Consensus 819 ------------------------~~sp~~~~~~~~--~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (954)
+..-++.+..++ +|+++|+|+.|..- ...+.++...+ ....++.+++|+
T Consensus 266 Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~--~~~~~~~~~v~~ 340 (365)
T KOG4409|consen 266 YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSL--MKEYVEIIIVPG 340 (365)
T ss_pred HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHh--hcccceEEEecC
Confidence 001122333444 89999999999863 45667777766 234589999999
Q ss_pred CCCcCCCcccHHHHHHHHHHHHHH
Q 002194 873 ESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
+||... ..+.+.+.+.++.++++
T Consensus 341 aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 341 AGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCceee-cCCHHHHHHHHHHHHhc
Confidence 999874 56677777777777764
No 158
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-08 Score=112.58 Aligned_cols=248 Identities=15% Similarity=0.174 Sum_probs=155.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccC-CCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQS-PDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~-~~~~ 241 (954)
..+|+|+-.. ++..+|..+. ...+..+.|+++|++|+... ....|.++|....+..+-... ....
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~---------~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT---------SDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee---------cCCeEEEEehhhccccccccCCcCce
Confidence 4799999754 5666776543 34789999999999999954 356777777655333222222 2222
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+..++|. +..+.... ....|...|+
T Consensus 263 ----vg~laW~--~~~lssGs-------------------------------------------------r~~~I~~~dv 287 (484)
T KOG0305|consen 263 ----VGSLAWN--SSVLSSGS-------------------------------------------------RDGKILNHDV 287 (484)
T ss_pred ----eEEEecc--CceEEEec-------------------------------------------------CCCcEEEEEE
Confidence 7788997 33333220 1122444444
Q ss_pred -CC-c-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccc
Q 002194 322 -DG-T-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 322 -~G-~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~ 396 (954)
.. . ...+... ..+-...|++||+++|-..+++ .+.|||....+. ..+..
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~~~------------- 341 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTFTE------------- 341 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEEec-------------
Confidence 22 1 1112223 5667899999999999877554 789999854332 23333
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+...+..++|+|=.+.|+.. |++ .....|..|+. .++...........+.++.||+..+.|+.+...
T Consensus 342 H~aAVKA~awcP~q~~lLAs-----GGG-----s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLAT-----GGG-----SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred cceeeeEeeeCCCccCceEE-----cCC-----CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 33556789999988877765 222 33567888885 444443434455668899999999999988765
Q ss_pred cccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...+..||.+..-. +......+...+.. +++||||..|+...
T Consensus 409 s~n~i~lw~~ps~~----~~~~l~gH~~RVl~------la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 409 SENQITLWKYPSMK----LVAELLGHTSRVLY------LALSPDGETIVTGA 450 (484)
T ss_pred CCCcEEEEeccccc----eeeeecCCcceeEE------EEECCCCCEEEEec
Confidence 55457888886532 12222222222222 78999999998876
No 159
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=5.3e-08 Score=104.59 Aligned_cols=135 Identities=9% Similarity=0.030 Sum_probs=76.5
Q ss_pred cccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 335 TSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 335 ~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
..+.+++ ||+++..+. . +++++.|+.+.+................-.....|...++++|||+++
T Consensus 197 ~rP~~~~~dg~~~~vs~-e-------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTY-T-------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred cCCceEcCCCcEEEEec-C-------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 3446677 886665554 2 389999977654333222111000000000112344459999999988
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
++....... ..-....+.|+++|. .+.+............++++||||+.++|..+... ..|.++|+.++
T Consensus 263 yV~~~~~~~---~thk~~~~~V~ViD~---~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s--~~VsViD~~t~ 332 (352)
T TIGR02658 263 YLLADQRAK---WTHKTASRFLFVVDA---KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD--KTLYIFDAETG 332 (352)
T ss_pred EEEecCCcc---ccccCCCCEEEEEEC---CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC--CcEEEEECcCC
Confidence 775332110 011134568999996 44444332233456788999999996667666443 45889998875
No 160
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.11 E-value=2.9e-09 Score=106.32 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.+.|+|+|+.|++.... +.+..+ ........|+.++... .+...+. +.....+.
T Consensus 10 ~~~W~~~G~~l~~~~~~------------------~~~~~~---ks~~~~~~l~~~~~~~----~~~~~i~-l~~~~~I~ 63 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQT------------------RVDKSG---KSYYGEFELFYLNEKN----IPVESIE-LKKEGPIH 63 (194)
T ss_pred EEEecccCCEEEEEEEE------------------eeccCc---ceEEeeEEEEEEecCC----Cccceee-ccCCCceE
Confidence 57899999999997762 011111 1111224566655432 3333333 22223589
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
.++|||+|+++|.+.. .....+.++|+++.....+ +... ...+.|||+|+.|+++.-.
T Consensus 64 ~~~WsP~g~~favi~g-------~~~~~v~lyd~~~~~i~~~---~~~~----~n~i~wsP~G~~l~~~g~~-------- 121 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYG-------SMPAKVTLYDVKGKKIFSF---GTQP----RNTISWSPDGRFLVLAGFG-------- 121 (194)
T ss_pred EEEECcCCCEEEEEEc-------cCCcccEEEcCcccEeEee---cCCC----ceEEEECCCCCEEEEEEcc--------
Confidence 9999999999988752 2233677777764333333 2222 4578999999999987110
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEee
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSI 351 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~ 351 (954)
+ ..+.|..+|. +.+............+.|||||++++....
T Consensus 122 ----------------------------n----------~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 122 ----------------------------N----------LNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred ----------------------------C----------CCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 0 1234667777 443332223355678999999999998763
Q ss_pred cCCcccccccCCCCcceEEEeccCceEEE
Q 002194 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (954)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~l~d~~g~~~~~ 380 (954)
. |..+.++.+.||+..|+...+
T Consensus 164 ~-------~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 164 S-------PRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred c-------cceeccccEEEEEecCeEeEe
Confidence 2 233345678899998876544
No 161
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.10 E-value=2.2e-08 Score=123.65 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=138.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC---CCCCCceeeeecCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP---DGKLGQEIEIQGFPD 187 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~g~~~~~~~lt~~~~ 187 (954)
+..++|||||++||....+ ..|.||++.. ++. .....+..+..
T Consensus 486 V~~i~fs~dg~~latgg~D---------------------------------~~I~iwd~~~~~~~~~-~~~~~~~~~~~ 531 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---------------------------------KKIKIFECESIIKDGR-DIHYPVVELAS 531 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCccccccc-ccccceEEecc
Confidence 5568899999999888765 5788998742 110 00001111112
Q ss_pred CCcccceeecCC-CCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec-CCeEEEEEecCC
Q 002194 188 GAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (954)
Q Consensus 188 ~~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~~~~~ 265 (954)
...+....|+|. ++.|+... ....|.++|+.+++........... +..++|+| ||..|+...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p~~~~~L~Sgs--- 595 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSSADPTLLASGS--- 595 (793)
T ss_pred cCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcCCCCCEEEEEc---
Confidence 235677899875 56666543 2457777788776654333222222 67899996 788777651
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCCcccccccc-CCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDP-SPD 342 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~~~~~~~~~-SpD 342 (954)
....|.++|+ ++.. ..+.....+..+.| +++
T Consensus 596 ----------------------------------------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 596 ----------------------------------------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred ----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 1234566676 5532 23322245566777 567
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
|+.|++.+.+ +.|.+||+.... ...+.. ....+..+.|+ |+..++..
T Consensus 630 g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~~-------------h~~~V~~v~f~-~~~~lvs~---- 678 (793)
T PLN00181 630 GRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMIG-------------HSKTVSYVRFV-DSSTLVSS---- 678 (793)
T ss_pred CCEEEEEeCC-------------CeEEEEECCCCCccceEecC-------------CCCCEEEEEEe-CCCEEEEE----
Confidence 9999887743 389999987532 122222 11344567886 56644333
Q ss_pred cCCCccccccCCCeEEEEecCCC----CCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
+..+.|.+|++... .......+..+...+..++|+|+|++|+..+.++. ..||.
T Consensus 679 ---------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~--v~iw~ 736 (793)
T PLN00181 679 ---------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE--VFVYH 736 (793)
T ss_pred ---------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE--EEEEE
Confidence 33557888886111 11223445555556677899999998888765442 44554
No 162
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.10 E-value=2e-08 Score=105.57 Aligned_cols=265 Identities=15% Similarity=0.168 Sum_probs=166.9
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|+-||..||+.. ....+.+++.+|+...-+-.+.+. +-++.|..+|.+|+...
T Consensus 236 kdVT~L~Wn~~G~~LatG~---------~~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~------ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGS---------EDGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGG------ 295 (524)
T ss_pred CCcceEEecCCCCeEEEee---------cCcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEecc------
Confidence 4788999999999999954 456667777777766655444443 77999999999999661
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~ 345 (954)
....+.++|. +|+..+.... ...-++.|--+.+.
T Consensus 296 -------------------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 296 -------------------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred -------------------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 1123566787 8876665544 22245666544433
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
. ..+. ++.|+++.++.+.+ +.+. ++...+..+.|.|.|+.|+-.
T Consensus 333 ~-ts~t-------------d~~i~V~kv~~~~P~~t~~-------------GH~g~V~alk~n~tg~LLaS~-------- 377 (524)
T KOG0273|consen 333 A-TSST-------------DGCIHVCKVGEDRPVKTFI-------------GHHGEVNALKWNPTGSLLASC-------- 377 (524)
T ss_pred e-ecCC-------------CceEEEEEecCCCcceeee-------------cccCceEEEEECCCCceEEEe--------
Confidence 2 2221 23678887775443 2222 223455679999999866554
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc---------eEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---------ALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~---------~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
+....+-+|.. -++.....|..+...+..+.|||+|. .|+.++.+.. .++| |...+ .+
T Consensus 378 -----SdD~TlkiWs~--~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst--V~lw--dv~~g--v~ 444 (524)
T KOG0273|consen 378 -----SDDGTLKIWSM--GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST--VKLW--DVESG--VP 444 (524)
T ss_pred -----cCCCeeEeeec--CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe--EEEE--EccCC--ce
Confidence 33445666663 23444455666666677888888754 3444443332 3444 55553 44
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccc
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKY 575 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 575 (954)
...+..+...+|+ ++|||+|+++++...+ ..+..|+..+++..+-...++. .
T Consensus 445 i~~f~kH~~pVys------vafS~~g~ylAsGs~d---------------------g~V~iws~~~~~l~~s~~~~~~-I 496 (524)
T KOG0273|consen 445 IHTLMKHQEPVYS------VAFSPNGRYLASGSLD---------------------GCVHIWSTKTGKLVKSYQGTGG-I 496 (524)
T ss_pred eEeeccCCCceEE------EEecCCCcEEEecCCC---------------------CeeEeccccchheeEeecCCCe-E
Confidence 5556566667777 8999999999998732 2388899988887665554432 1
Q ss_pred cceeEEeccCCccccccccCCEEEEEEe
Q 002194 576 YETTVALMSDQTEGDLYLNQLKILTSKE 603 (954)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (954)
+ ...|+.+|+++....+
T Consensus 497 f-----------el~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 497 F-----------ELCWNAAGDKLGACAS 513 (524)
T ss_pred E-----------EEEEcCCCCEEEEEec
Confidence 1 2457777877665444
No 163
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.09 E-value=2.5e-09 Score=115.50 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=106.7
Q ss_pred CcEEEEcCCCCCCCCCC-cccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE--
Q 002194 712 GFAILGGPTTPIIGEGD-EEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI-- 788 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~-~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v-- 788 (954)
|+.|++ .+..|+|. +..+... .....+....+..+..... .+++.++|||+||.+|+.+|+.+|+.++.+|
T Consensus 86 ~~~v~a---iDl~G~g~~s~~~~~~-~y~~~~~v~~i~~~~~~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~ 159 (326)
T KOG1454|consen 86 GLRVLA---IDLPGHGYSSPLPRGP-LYTLRELVELIRRFVKEVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLL 159 (326)
T ss_pred ceEEEE---EecCCCCcCCCCCCCC-ceehhHHHHHHHHHHHhhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeee
Confidence 699999 66667773 3222211 1223333333333333322 2459999999999999999999999999999
Q ss_pred -EeccCCCCCCC--------------------CC------C-Ccc-----------ccchhhhcH--------------H
Q 002194 789 -ARSGAYNRTLT--------------------PF------G-FQN-----------EDRTLWEAT--------------S 815 (954)
Q Consensus 789 -~~~~~~~~~~~--------------------~~------~-~~~-----------~~~~~~~~~--------------~ 815 (954)
...+.+...-. +. . +.. .....++.. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (326)
T KOG1454|consen 160 DLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRD 239 (326)
T ss_pred cccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhh
Confidence 44443221000 00 0 000 000000000 0
Q ss_pred HHH---------hcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHH
Q 002194 816 TYV---------EMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (954)
Q Consensus 816 ~~~---------~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (954)
.+. +......+.++. +|+||++|+.|..+| .+.+.++.+.+ .++++++++++||... .+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~ 312 (326)
T KOG1454|consen 240 ARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEE 312 (326)
T ss_pred heeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHH
Confidence 000 012233455666 999999999999998 77666665554 4579999999999875 477889
Q ss_pred HHHHHHHHHHHh
Q 002194 886 VLWETDRWLQKY 897 (954)
Q Consensus 886 ~~~~i~~fl~~~ 897 (954)
+...|..|+.++
T Consensus 313 ~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 313 VAALLRSFIARL 324 (326)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 164
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.08 E-value=2e-09 Score=124.74 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 109 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
..+.++++||||+++||+... .+.+.+.. ..||+.+. + +..++++ .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~-------------------~~~~~d~~------s~Lwv~~~--g---g~~~~lt---~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTL-------------------GRGAPDPA------SSLWVGPL--G---GVAVQVL---EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEee-------------------cCCCCCcc------eEEEEEeC--C---Ccceeee---cC
Confidence 356789999999999999864 33222322 38999886 2 3446664 23
Q ss_pred CcccceeecCCCCeEEEEEeecc---ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~---~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.....|+|||||++|+|..+... ....++..+||++++++++.++ ..+.. +..+.|||||++|++.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~-----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP-----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC-----cCeEEECCCCCEEEEE
Confidence 35889999999999999864211 1223456799999999988876 22322 7899999999999998
No 165
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.08 E-value=8.9e-09 Score=100.24 Aligned_cols=207 Identities=18% Similarity=0.189 Sum_probs=122.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|.+|++.. ++...-+. .........|||||+++++... ...|-.+|...-+...-......
T Consensus 87 k~ir~wd~r~----~k~~~~i~--~~~eni~i~wsp~g~~~~~~~k---------dD~it~id~r~~~~~~~~~~~~e-- 149 (313)
T KOG1407|consen 87 KTIRIWDIRS----GKCTARIE--TKGENINITWSPDGEYIAVGNK---------DDRITFIDARTYKIVNEEQFKFE-- 149 (313)
T ss_pred ceEEEEEecc----CcEEEEee--ccCcceEEEEcCCCCEEEEecC---------cccEEEEEecccceeehhcccce--
Confidence 4789999864 33333222 2234677899999999999653 45677777655433222111211
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~ 322 (954)
+..+.|.-++..++.+ .. . |.-+|..+..=
T Consensus 150 ---~ne~~w~~~nd~Fflt-~G--------------------l--------------------------G~v~ILsypsL 179 (313)
T KOG1407|consen 150 ---VNEISWNNSNDLFFLT-NG--------------------L--------------------------GCVEILSYPSL 179 (313)
T ss_pred ---eeeeeecCCCCEEEEe-cC--------------------C--------------------------ceEEEEecccc
Confidence 4578899777766654 10 0 22223333211
Q ss_pred CceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccC
Q 002194 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
..+..|... ..-.-+.|+||||++|..+.+. -+.+||++.-. .|.++.+. ..
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~GsADA-------------lvSLWD~~ELiC~R~isRld-------------wp 233 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFATGSADA-------------LVSLWDVDELICERCISRLD-------------WP 233 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEeeccccc-------------eeeccChhHhhhheeecccc-------------Cc
Confidence 112222222 4455678999999999988543 67899988432 23344432 45
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
+|.++||.||+.|+-. ++..-|=+..+ .+|.+...+ ..++....++|.|..-.|+|+..++.
T Consensus 234 VRTlSFS~dg~~lASa-------------SEDh~IDIA~v--etGd~~~eI-~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASA-------------SEDHFIDIAEV--ETGDRVWEI-PCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred eEEEEeccCcceeecc-------------CccceEEeEec--ccCCeEEEe-eccCCceeEEecCCCceeeEEecCCC
Confidence 6889999999987765 22222222222 133333332 34555678999999999999987654
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.06 E-value=4.7e-09 Score=105.09 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=132.6
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
...|||+|++||..+ ..+|.+.|.++-+..++...-.. +.-+.|+.|.-.|.+...
T Consensus 13 ~c~fSp~g~yiAs~~----------~yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~y--------- 68 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS----------RYRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAY--------- 68 (447)
T ss_pred ceeECCCCCeeeeee----------eeEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeee---------
Confidence 568999999999987 45899999888777776543322 557889999988887611
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCcEEEEE
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILIS 349 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~ 349 (954)
....+.++++ .-+ .-.|..+ .+.....||||||.|+.+
T Consensus 69 ---------------------------------------k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 69 ---------------------------------------KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred ---------------------------------------ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeee
Confidence 1122445555 222 2345555 778899999999999988
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (954)
+. |.-.|.+|.+.+.....+.... .++..++|.|||+..+... +.|-.+.
T Consensus 110 se------------F~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f~ai~s-RrDCkdy---- 159 (447)
T KOG4497|consen 110 SE------------FDLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQFCAILS-RRDCKDY---- 159 (447)
T ss_pred ec------------ceeEEEEEEeccceeEEecccc-------------cCceeEEECCCCceeeeee-cccHHHH----
Confidence 72 3448889999887766555432 3445789999999665542 2222111
Q ss_pred cCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCC
Q 002194 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSD 509 (954)
Q Consensus 430 ~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~ 509 (954)
-.|.... +=.-.+...-...+..++-|||||..|+.-.+--. ..+|...-..| +.+
T Consensus 160 ---v~i~~c~----~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~~lG-----~k~---------- 215 (447)
T KOG4497|consen 160 ---VQISSCK----AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYERGLG-----LKF---------- 215 (447)
T ss_pred ---HHHHhhH----HHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeeeccc-----eeE----------
Confidence 0111000 00000111112334567899999999987543222 34554443332 111
Q ss_pred CCCCCeeeccCCcEEEEEEe
Q 002194 510 PGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~~ 529 (954)
+.|||-++.|+....
T Consensus 216 -----v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 216 -----VEWSPCNQFLAVGSY 230 (447)
T ss_pred -----EEeccccceEEeecc
Confidence 678898888887763
No 167
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.06 E-value=9.3e-08 Score=109.06 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=143.4
Q ss_pred ceEEEEEe-CCceeEcC-CCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE--EEeccCCCccc
Q 002194 314 TQLVLVSL-DGTVKEIG-PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAED 389 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~-~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~--~~l~~~~~~~~ 389 (954)
..|+++|+ +|+...-. .......+.|++||+.++|+......... ...++.+++.+.+.+... +.|...+...
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~- 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP- 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC-
Confidence 46889999 88433211 11222338999999999999866531100 122355888888875432 2333322110
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCC-----CCceEEeeccccc-Cceee
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-----EGPEILHKLDLRY-GGISW 463 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-----~~~~~l~~~~~~~-~~~~~ 463 (954)
.....+..|+||+.+++..... .....+|++++ .. .+.+.+....... ..+..
T Consensus 227 ---------~~~~~~~~s~d~~~l~i~~~~~---------~~~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 227 ---------FWFVSVSRSKDGRYLFISSSSG---------TSESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp ---------TSEEEEEE-TTSSEEEEEEESS---------SSEEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred ---------cEEEEEEecCcccEEEEEEEcc---------ccCCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEc
Confidence 0023577899999776653221 11357999996 33 3556665533222 23333
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCCCCC-CcE-EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEe
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGSKDV-APR-ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (954)
. |..+++.++.+..+.+|+.++++.... ... .+......... -.++..+.+|+.....
T Consensus 286 ~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~Lvl~~~~----------- 345 (414)
T PF02897_consen 286 H--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSLFKDYLVLSYRE----------- 345 (414)
T ss_dssp E--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEEETTEEEEEEEE-----------
T ss_pred c--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE-------EEEEEECCEEEEEEEE-----------
Confidence 3 777888877766678999999988632 112 33322211111 2345556666665532
Q ss_pred cCCCCCCCCCCeEEEEECC-CCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCc
Q 002194 542 GNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (954)
Q Consensus 542 ~~~~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~ 620 (954)
.....|+++++. +.....+...... .+.. .+.+++++.+++..++...|+.+|.+|+.+++
T Consensus 346 -------~~~~~l~v~~~~~~~~~~~~~~p~~g----~v~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 346 -------NGSSRLRVYDLDDGKESREIPLPEAG----SVSG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -------TTEEEEEEEETT-TEEEEEEESSSSS----EEEE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred -------CCccEEEEEECCCCcEEeeecCCcce----EEec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 135679999999 5555555544422 1111 23456789999999999999999999999999
Q ss_pred eeEeec
Q 002194 621 SCQITD 626 (954)
Q Consensus 621 ~~~Lt~ 626 (954)
.+.|..
T Consensus 408 ~~~~k~ 413 (414)
T PF02897_consen 408 LTLLKQ 413 (414)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888763
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.4e-07 Score=101.23 Aligned_cols=341 Identities=13% Similarity=0.168 Sum_probs=187.4
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
-+.+.|||-|.+|+..-.+ +|.+|- | ..-.++..+.+ ..
T Consensus 213 etyv~wSP~GTYL~t~Hk~----------------------------------GI~lWG----G--~~f~r~~RF~H-p~ 251 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ----------------------------------GIALWG----G--ESFDRIQRFYH-PG 251 (698)
T ss_pred eeeEEecCCceEEEEEecc----------------------------------ceeeec----C--ccHHHHHhccC-CC
Confidence 3578999999999876653 666763 2 12223333332 26
Q ss_pred ccceeecCCCCeEEEEEeecc--ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~--~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+....|||.-++|+.-+.... ..+.++..+|.++|+.+|...+-+....... .....+.||.|+++++.....
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~DdKy~Arm~~~---- 326 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDDKYFARMTGN---- 326 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCCceeEEeccc----
Confidence 888999999999887664332 2345677899999999998766554422110 013368899999999976110
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCCccccccccCCCCcEEEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....+.+..+.++ +++.-.+ .++..+.|||-+..|||
T Consensus 327 --------------------------------------sisIyEtpsf~ll--d~Kslki---~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 327 --------------------------------------SISIYETPSFMLL--DKKSLKI---SGIRDFSWSPTSNLLAY 363 (698)
T ss_pred --------------------------------------eEEEEecCceeee--cccccCC---ccccCcccCCCcceEEE
Confidence 0000111112222 2222222 56889999999999999
Q ss_pred EeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
-.-... ..+..+-|..+-.+ +++...-.... --.+.|-..|.+|.+-+++...+...-
T Consensus 364 wtpe~~--------~~parvtL~evPs~~~iRt~nlfnVs-------------DckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 364 WTPETN--------NIPARVTLMEVPSKREIRTKNLFNVS-------------DCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred Eccccc--------CCcceEEEEecCccceeeeccceeee-------------ccEEEeccCCcEEEEEEEeeccccccc
Confidence 873321 12335555655533 22221111111 124789999999988866543221000
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc-ccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
..+ +-.|+.++ ...-+.........+-..+|-|.|..++..+... ....+.|.+....+ .+..+........
T Consensus 423 ~f~-n~eIfrir----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~~~lVk~~dk~~~ 495 (698)
T KOG2314|consen 423 QFS-NLEIFRIR----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--KPSLVKELDKKFA 495 (698)
T ss_pred eEe-eEEEEEee----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC--chhhhhhhccccc
Confidence 000 11344443 2222222223333456689999998877655332 23467787776553 3333322221111
Q ss_pred cCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCC
Q 002194 507 YSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQ 586 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 586 (954)
. .+.|||.|++++...... ....|+-+|++-...+++-..+ . ...
T Consensus 496 N------~vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e-h----------~~a 540 (698)
T KOG2314|consen 496 N------TVFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE-H----------FAA 540 (698)
T ss_pred c------eEEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc-c----------ccc
Confidence 1 178999999999887421 2234788887642332222222 0 011
Q ss_pred ccccccccCCEEEEEEe
Q 002194 587 TEGDLYLNQLKILTSKE 603 (954)
Q Consensus 587 ~~~~~s~dg~~l~~~~~ 603 (954)
....|+|.|++++...+
T Consensus 541 t~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ccceECCCCCEEEEeee
Confidence 23568888887664443
No 169
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.06 E-value=8.6e-09 Score=103.26 Aligned_cols=140 Identities=18% Similarity=0.142 Sum_probs=89.2
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.-.|||+|++||..++- .+.|.|..+ -+..+|-.. -..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y----------------------------------rlviRd~~t----lq~~qlf~c--ldki~ 52 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY----------------------------------RLVIRDSET----LQLHQLFLC--LDKIV 52 (447)
T ss_pred ceeECCCCCeeeeeeee----------------------------------EEEEeccch----hhHHHHHHH--HHHhh
Confidence 67899999999998862 566766533 333333211 12688
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~ 272 (954)
..-|+.|..+|+-... . ..-|.++++..-+-.--.+.+. +++....|||||+.|..++.
T Consensus 53 yieW~ads~~ilC~~y------k--~~~vqvwsl~Qpew~ckIdeg~----agls~~~WSPdgrhiL~tse--------- 111 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAY------K--DPKVQVWSLVQPEWYCKIDEGQ----AGLSSISWSPDGRHILLTSE--------- 111 (447)
T ss_pred heeeeccceeeeeeee------c--cceEEEEEeecceeEEEeccCC----CcceeeeECCCcceEeeeec---------
Confidence 8999999999987653 2 2345555554433322222222 22778999999988886510
Q ss_pred CCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEe
Q 002194 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (954)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s 350 (954)
...+|-++.+ +.+...+..+ .....++|.|||++.+..+
T Consensus 112 ---------------------------------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 112 ---------------------------------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ---------------------------------------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 1123445555 5555555555 5567899999999999887
Q ss_pred ec
Q 002194 351 IH 352 (954)
Q Consensus 351 ~~ 352 (954)
.+
T Consensus 153 Rr 154 (447)
T KOG4497|consen 153 RR 154 (447)
T ss_pred cc
Confidence 54
No 170
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.05 E-value=5.7e-09 Score=115.67 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=57.2
Q ss_pred ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCCcCCCcccHHHHHHHHHHHHHH
Q 002194 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 825 ~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.+.++++|+|+|+|+.|..+| ++.++++.+.+...+.+++++++++ .||... .+....+.+.|.+||++
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999998 8999999998887666789999985 899864 56667788888888764
No 171
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.05 E-value=5.1e-08 Score=96.99 Aligned_cols=271 Identities=12% Similarity=0.078 Sum_probs=170.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
++....|+|||..+|....+ ..|.+|++- |.......++++. +
T Consensus 49 eI~~~~F~P~gs~~aSgG~D---------------------------------r~I~LWnv~--gdceN~~~lkgHs--g 91 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSD---------------------------------RAIVLWNVY--GDCENFWVLKGHS--G 91 (338)
T ss_pred eEEEEEECCCCCeEeecCCc---------------------------------ceEEEEecc--ccccceeeecccc--c
Confidence 35567899999999887765 589999984 3334555666532 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|.+||..|+-+.. ...|+.+|+++|+..+-....... +..+.-+.=|-.++.+..
T Consensus 92 AVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~Sgs------ 152 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT---------DKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSGS------ 152 (338)
T ss_pred eeEeeeeccCCCEEEEecC---------CceEEEEecccceeeehhccccce----eeecCccccCCeEEEecC------
Confidence 7899999999999988653 678999999998876554433332 344443334555555410
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
...++-++|. .. .++.+.+....+.+.|..++..+.
T Consensus 153 ------------------------------------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 153 ------------------------------------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred ------------------------------------------CCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 1234556676 44 344444447788899998888876
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
...- +++|.+||+..++...+... ...-+..+..||+|..+.--
T Consensus 191 sggI-------------dn~ikvWd~r~~d~~~~lsG------------h~DtIt~lsls~~gs~llsn----------- 234 (338)
T KOG0265|consen 191 SGGI-------------DNDIKVWDLRKNDGLYTLSG------------HADTITGLSLSRYGSFLLSN----------- 234 (338)
T ss_pred eccc-------------cCceeeeccccCcceEEeec------------ccCceeeEEeccCCCccccc-----------
Confidence 6553 34899999976555444432 22334678899999865433
Q ss_pred cccCCCeEEEEecCCCCCCCc-eEEe-eccc----ccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGP-EILH-KLDL----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~-~~l~-~~~~----~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
+-...+.+|++.|...++. ..+. .... ..-..+|||+++.+-+.+.++ .+|++|..+. ...-...+
T Consensus 235 --sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr----~vyvwd~~~r--~~lyklpG 306 (338)
T KOG0265|consen 235 --SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR----FVYVWDTTSR--RILYKLPG 306 (338)
T ss_pred --cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc----eEEEeecccc--cEEEEcCC
Confidence 2245777888767766555 3332 2222 223479999999998876543 4777777652 11112223
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
....+.. +.|.|....|....
T Consensus 307 h~gsvn~------~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 307 HYGSVNE------VDFHPTEPIILSCS 327 (338)
T ss_pred cceeEEE------eeecCCCcEEEEec
Confidence 3332222 67888887766654
No 172
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=4e-07 Score=93.79 Aligned_cols=253 Identities=9% Similarity=0.063 Sum_probs=144.8
Q ss_pred eEEEEEe-CCceeEcCCC----ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEe---ccCC
Q 002194 315 QLVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVREL---CDLP 385 (954)
Q Consensus 315 ~l~~~~~-~G~~~~l~~~----~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l---~~~~ 385 (954)
.-|.+|- +|+.+.+... .....+++++||++|+...... +.|.++.++. +.+..+ ..+.
T Consensus 67 aay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h~ 134 (346)
T COG2706 67 AAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKHT 134 (346)
T ss_pred EEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeecC
Confidence 3556665 6877766543 2336789999999988877543 2566666642 222211 1111
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe----ecccccCce
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGI 461 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~----~~~~~~~~~ 461 (954)
.. .|. ......-+-...++|||+.++.. + -+.++|+++++ +.+...... ......+.+
T Consensus 135 g~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~-D-----------LG~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 135 GS--GPH-ERQESPHVHSANFTPDGRYLVVP-D-----------LGTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred CC--CCC-ccccCCccceeeeCCCCCEEEEe-e-----------cCCceEEEEEc---ccCccccccccccCCCCCcceE
Confidence 11 011 00000002346799999966554 1 23568999997 333332221 223345679
Q ss_pred eeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEe
Q 002194 462 SWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLN 541 (954)
Q Consensus 462 ~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 541 (954)
.|.|+|+..+...+-+ ....+|.++...+..+..+....-..+..+.+....+..|+||++|+....+-
T Consensus 197 ~FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~---------- 265 (346)
T COG2706 197 VFHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH---------- 265 (346)
T ss_pred EEcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC----------
Confidence 9999999766654433 34778888876553333332222223333333334478899999988765322
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 542 GNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 542 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
+...++.+|.++|+...+....-+ ..+ -.+..|+++|+.|++..+.... -.+|.++..+|+.
T Consensus 266 --------dsI~~f~V~~~~g~L~~~~~~~te-------g~~--PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L 327 (346)
T COG2706 266 --------DSIAVFSVDPDGGKLELVGITPTE-------GQF--PRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRL 327 (346)
T ss_pred --------CeEEEEEEcCCCCEEEEEEEeccC-------CcC--CccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceE
Confidence 123477778888876655332211 000 1135788999888877775553 6788889888877
Q ss_pred eEeec
Q 002194 622 CQITD 626 (954)
Q Consensus 622 ~~Lt~ 626 (954)
..+..
T Consensus 328 ~~~~~ 332 (346)
T COG2706 328 TLLGR 332 (346)
T ss_pred Eeccc
Confidence 76654
No 173
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.05 E-value=1.2e-08 Score=118.02 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=72.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.||||+.+++-.+- ...|.+++..+.+...++.....- +..+.|-|=|++|+..
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~---------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASq------- 189 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSL---------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQ------- 189 (942)
T ss_pred CccceeccCCCccEEEEecc---------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeee-------
Confidence 47899999999999988653 567788888877666665555432 6789999999999966
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-------ccccccccCC
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-------AVYTSLDPSP 341 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-------~~~~~~~~Sp 341 (954)
+.+ .+-.+|+.+--|-.+.++.+ ..+..+.|||
T Consensus 190 --------------sdD--------------------------rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 190 --------------SDD--------------------------RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred --------------cCC--------------------------ceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 111 12224442224555666554 3456899999
Q ss_pred CCcEEEEEeec
Q 002194 342 DEKYILISSIH 352 (954)
Q Consensus 342 DGk~l~~~s~~ 352 (954)
||++|+.....
T Consensus 230 DG~~las~nA~ 240 (942)
T KOG0973|consen 230 DGHHLASPNAV 240 (942)
T ss_pred CcCeecchhhc
Confidence 99999986543
No 174
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.05 E-value=1e-08 Score=109.18 Aligned_cols=191 Identities=23% Similarity=0.252 Sum_probs=121.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC-
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA- 780 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~- 780 (954)
.+...|+++||+|+.+|| .|.|..+.........+-|.++|+..+... +.....+++++|+|.||..+++++...
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 456678899999999666 455544333333445566666666666543 322346899999999999998887543
Q ss_pred ---CCc---ccEEEEeccCCCCCCC-------CC-------------CCcccc-----------chhh------------
Q 002194 781 ---PHL---FCCGIARSGAYNRTLT-------PF-------------GFQNED-----------RTLW------------ 811 (954)
Q Consensus 781 ---p~~---~~a~v~~~~~~~~~~~-------~~-------------~~~~~~-----------~~~~------------ 811 (954)
|++ +.++++.+++.|.... .+ .++... ....
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 444 6788887776652110 00 000000 0000
Q ss_pred -----------------------hcH---HHHHhcCc-ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-C
Q 002194 812 -----------------------EAT---STYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-A 863 (954)
Q Consensus 812 -----------------------~~~---~~~~~~sp-~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~ 863 (954)
.++ ..+.+++. ...-..-+.|+||.||..|.+|| +....++++++...| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 000 00111111 00011225799999999999999 999999999999999 8
Q ss_pred cEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 864 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+++++.+++.+|...... .....++||...+...+
T Consensus 252 ~V~~~~~~~~~H~~~~~~----~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAFA----SAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhhhc----CcHHHHHHHHHHHCCCC
Confidence 999999999999753222 23567899999987654
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.3e-08 Score=106.62 Aligned_cols=279 Identities=11% Similarity=0.056 Sum_probs=161.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe-EEEEEecCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST-LLVCTIPLLRG 267 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~-~l~~~~~~~~~ 267 (954)
..+..+.|.|.-. |+.+.. -++..+||-+|-.... .|+...-.. -.+....|+|+|+ .|+++.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG------~d~~lrifqvDGk~N~--~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAG------LDGTLRIFQVDGKVNP--KLQSIHLEK--FPIQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCc-eEEEec------CCCcEEEEEecCccCh--hheeeeecc--CccceeeecCCCceEEEecc-----
Confidence 4788899999655 444432 3457777777644333 333222111 0256788999999 555440
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-----ccccccccCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDPSP 341 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-----~~~~~~~~Sp 341 (954)
...-+|.+|+ +++...+... .....+..||
T Consensus 278 --------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 278 --------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred --------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 1234889999 8877776654 3567889999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|+++|++....+ .|.|.-..+++. |+... ..+.+..+.|+.||+.|+..
T Consensus 314 d~~fia~~G~~G-------------~I~lLhakT~el--i~s~K-----------ieG~v~~~~fsSdsk~l~~~----- 362 (514)
T KOG2055|consen 314 DSNFIAIAGNNG-------------HIHLLHAKTKEL--ITSFK-----------IEGVVSDFTFSSDSKELLAS----- 362 (514)
T ss_pred CCCeEEEcccCc-------------eEEeehhhhhhh--hheee-----------eccEEeeEEEecCCcEEEEE-----
Confidence 999999987432 566665554432 22211 11345679999999877766
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeeccccc--CceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY--GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~--~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
.+.+.||+|++ ........-..++.+ ..++.|++|++++..++.+ -..||..+..-...+|+.+.
T Consensus 363 --------~~~GeV~v~nl---~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G--iVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 363 --------GGTGEVYVWNL---RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG--IVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred --------cCCceEEEEec---CCcceEEEEeecCccceeeeeecCCCceEEeccCcc--eEEEeccchhhccCCCCchh
Confidence 55779999997 332222222233334 3467789999888876543 25566543211112333332
Q ss_pred c--CCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccc
Q 002194 500 D--RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 577 (954)
Q Consensus 500 ~--~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 577 (954)
. .-...+.+ ++|++|+..|+..+.. ....|.++.+.+-.+-.-|.....+.-
T Consensus 430 ~~dNLtt~Its------l~Fn~d~qiLAiaS~~-------------------~knalrLVHvPS~TVFsNfP~~n~~vg- 483 (514)
T KOG2055|consen 430 TVDNLTTAITS------LQFNHDAQILAIASRV-------------------KKNALRLVHVPSCTVFSNFPTSNTKVG- 483 (514)
T ss_pred hhhhhheeeee------eeeCcchhhhhhhhhc-------------------cccceEEEeccceeeeccCCCCCCccc-
Confidence 1 11111222 8899999988887632 123466666655443333333322111
Q ss_pred eeEEeccCCccccccccCCEEEEEEec
Q 002194 578 TTVALMSDQTEGDLYLNQLKILTSKES 604 (954)
Q Consensus 578 ~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (954)
.+. -.+|||.|+++++-...
T Consensus 484 ~vt-------c~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 484 HVT-------CMAFSPNSGYLAVGNEA 503 (514)
T ss_pred ceE-------EEEecCCCceEEeecCC
Confidence 111 14799999988875554
No 176
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.04 E-value=1.6e-09 Score=101.82 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=132.6
Q ss_pred CceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 637 ~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
.+.+.+.|-. .| .-..-++.|.+ ..|++|++|||++..++....+ ..+.....+||+|.
T Consensus 43 ~r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~cl------------siv~~a~~~gY~va 101 (270)
T KOG4627|consen 43 IRVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKMCL------------SIVGPAVRRGYRVA 101 (270)
T ss_pred cchhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhccc------------chhhhhhhcCeEEE
Confidence 3455555542 22 22345666643 2689999999987655432211 12445678999999
Q ss_pred EcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCC
Q 002194 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYN 795 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~ 795 (954)
...| +.. ...+...+.+.++...++|+.+... ..+.+.+.|||.|+.+++.+.++. ..++.+++..+|+++
T Consensus 102 svgY------~l~-~q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~ 173 (270)
T KOG4627|consen 102 SVGY------NLC-PQVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYD 173 (270)
T ss_pred Eecc------CcC-cccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhh
Confidence 8333 222 1234568889999999999988642 346799999999999999988864 358999999999887
Q ss_pred CCC---C----CCCCccccchhhhcHHHHHhcCcc-cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 002194 796 RTL---T----PFGFQNEDRTLWEATSTYVEMSPF-MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 867 (954)
Q Consensus 796 ~~~---~----~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~ 867 (954)
..- + ..++..+ ..+..|+. .....++.|+|++.+++|.- .++++.+.+...+++. ++
T Consensus 174 l~EL~~te~g~dlgLt~~---------~ae~~Scdl~~~~~v~~~ilVv~~~~esp--klieQnrdf~~q~~~a----~~ 238 (270)
T KOG4627|consen 174 LRELSNTESGNDLGLTER---------NAESVSCDLWEYTDVTVWILVVAAEHESP--KLIEQNRDFADQLRKA----SF 238 (270)
T ss_pred HHHHhCCccccccCcccc---------hhhhcCccHHHhcCceeeeeEeeecccCc--HHHHhhhhHHHHhhhc----ce
Confidence 321 1 1122111 11222221 23456788999999999975 5589999999998875 78
Q ss_pred EEeCCCCCcC
Q 002194 868 VILPFESHGY 877 (954)
Q Consensus 868 ~~~~~~~H~~ 877 (954)
..|++-+|.-
T Consensus 239 ~~f~n~~hy~ 248 (270)
T KOG4627|consen 239 TLFKNYDHYD 248 (270)
T ss_pred eecCCcchhh
Confidence 8899988853
No 177
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.9e-07 Score=93.97 Aligned_cols=251 Identities=10% Similarity=0.039 Sum_probs=151.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++.||+||..++.++.+ ..|.|++... | .+.+.|.....
T Consensus 16 ~i~sl~fs~~G~~litss~d---------------------------------Dsl~LYd~~~-g--~~~~ti~skky-- 57 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSED---------------------------------DSLRLYDSLS-G--KQVKTINSKKY-- 57 (311)
T ss_pred ceeEEEecCCCCEEEEecCC---------------------------------CeEEEEEcCC-C--ceeeEeecccc--
Confidence 57789999999999997665 4789999853 3 33444433222
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|.-....+.+.+. .....|..+++.+.+-.+.+.+.... +.++.-+|-+..+..++
T Consensus 58 G~~~~~Fth~~~~~i~sSt-------k~d~tIryLsl~dNkylRYF~GH~~~----V~sL~~sP~~d~FlS~S------- 119 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSST-------KEDDTIRYLSLHDNKYLRYFPGHKKR----VNSLSVSPKDDTFLSSS------- 119 (311)
T ss_pred cccEEEEecCCceEEEccC-------CCCCceEEEEeecCceEEEcCCCCce----EEEEEecCCCCeEEecc-------
Confidence 4666777666677777553 34578888899888888887766554 77888889887666541
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
. ...|..+|+ ..+-.-+-.-..-.-.++.|.|-.+|.
T Consensus 120 --------------~----------------------------D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 120 --------------L----------------------------DKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred --------------c----------------------------CCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 1 123444555 222111111112223689999966665
Q ss_pred EeecCCcccccccCCCCcceEEEeccC--ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g--~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
.... ..|.+||+.. +.+........ ........+.||||||.|+..
T Consensus 158 ~~~~-------------~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLls---------- 205 (311)
T KOG1446|consen 158 ANGS-------------ELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGKSILLS---------- 205 (311)
T ss_pred ecCC-------------CeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCCEEEEE----------
Confidence 5522 1788999872 22221111110 111233578999999998887
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccc---cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecC
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 501 (954)
...+.++++|+ .+|.....++..... .....|+|||+.|+..++++ +|.++++.++ ..+..+..
T Consensus 206 ---T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg----~i~vw~~~tg--~~v~~~~~ 272 (311)
T KOG1446|consen 206 ---TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG----TIHVWNLETG--KKVAVLRG 272 (311)
T ss_pred ---eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC----cEEEEEcCCC--cEeeEecC
Confidence 34567889986 666533333332221 24578999999988876543 3455555664 33444444
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.03 E-value=6.4e-09 Score=103.87 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=84.9
Q ss_pred cccccceEEEEEe-CCceeEcCC--CccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 309 DYYATTQLVLVSL-DGTVKEIGP--PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 309 ~~~~~~~l~~~~~-~G~~~~l~~--~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
.+++...||.++. +.....+.. .+.+.+++|||+|+.+++..... +..+.+||+++..+..+..
T Consensus 34 s~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----------~~~v~lyd~~~~~i~~~~~-- 100 (194)
T PF08662_consen 34 SYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----------PAKVTLYDVKGKKIFSFGT-- 100 (194)
T ss_pred eEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccC-----------CcccEEEcCcccEeEeecC--
Confidence 3446778999988 555555543 35689999999999998876322 3478999998655554432
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeec
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWC 464 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~s 464 (954)
.....+.|||+|+.+++.--. ...+.|.+||. . +...+. ........+.||
T Consensus 101 -------------~~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 101 -------------QPRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWS 152 (194)
T ss_pred -------------CCceEEEECCCCCEEEEEEcc----------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEc
Confidence 122468999999988876110 12356889996 3 333342 223345679999
Q ss_pred cCCceEEEEEe
Q 002194 465 DDSLALVYESW 475 (954)
Q Consensus 465 pDg~~l~~~~~ 475 (954)
|||++|+.+..
T Consensus 153 PdGr~~~ta~t 163 (194)
T PF08662_consen 153 PDGRYLATATT 163 (194)
T ss_pred CCCCEEEEEEe
Confidence 99999998754
No 179
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.02 E-value=6.6e-09 Score=116.12 Aligned_cols=145 Identities=9% Similarity=0.044 Sum_probs=98.5
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..+.|+|-|-+.|..+.+ ++-.+|..+.....++... +...+.-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D-------------~tArLWs~d~~~PlRifag------------hlsDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHD-------------QTARLWSTDHNKPLRIFAG------------HLSDVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCC-------------ceeeeeecccCCchhhhcc------------cccccceEEECCccc
Confidence 667788899999777766533 3556887775444443332 223345588999987
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+++-- +....+.+||+ .+|...|..+++...+..++|||+|++|+..+.+. .|.++|+.++
T Consensus 549 Y~aTG-------------SsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~----~I~iWDl~~~ 609 (707)
T KOG0263|consen 549 YVATG-------------SSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG----LIKIWDLANG 609 (707)
T ss_pred ccccC-------------CCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecccCC----cEEEEEcCCC
Confidence 54322 33556788886 56667777788899999999999999999886554 3555566664
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+......+...+++ ++||.||..|+...
T Consensus 610 --~~v~~l~~Ht~ti~S------lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYS------LSFSRDGNVLASGG 638 (707)
T ss_pred --cchhhhhcccCceeE------EEEecCCCEEEecC
Confidence 233333334555565 89999999888776
No 180
>PRK05855 short chain dehydrogenase; Validated
Probab=99.01 E-value=3.9e-09 Score=126.69 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=121.1
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (954)
..+|..+..+.+-++ ..|.||++||.+... ..| . .+...| +.||.|++ ++..|
T Consensus 9 ~~~g~~l~~~~~g~~--------~~~~ivllHG~~~~~-----------~~w---~-~~~~~L-~~~~~Vi~---~D~~G 61 (582)
T PRK05855 9 SSDGVRLAVYEWGDP--------DRPTVVLVHGYPDNH-----------EVW---D-GVAPLL-ADRFRVVA---YDVRG 61 (582)
T ss_pred eeCCEEEEEEEcCCC--------CCCeEEEEcCCCchH-----------HHH---H-HHHHHh-hcceEEEE---ecCCC
Confidence 458888887665321 157899999964211 111 1 233344 78999999 66678
Q ss_pred CCCcccch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCC-CC--
Q 002194 726 EGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY-NR-- 796 (954)
Q Consensus 726 ~G~~~~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~-~~-- 796 (954)
+|.+.... .......+|+..+++.+. . ..++.++||||||.+++.++... ++++...+..++.. +.
T Consensus 62 ~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~ 136 (582)
T PRK05855 62 AGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVG 136 (582)
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHH
Confidence 88875432 224566777777777652 1 23599999999999888776652 23344333333211 00
Q ss_pred -----CC---CCCCC--------c----------c---------ccchhhh------------------------cHHHH
Q 002194 797 -----TL---TPFGF--------Q----------N---------EDRTLWE------------------------ATSTY 817 (954)
Q Consensus 797 -----~~---~~~~~--------~----------~---------~~~~~~~------------------------~~~~~ 817 (954)
.. .+..+ . . .....+. ....+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (582)
T PRK05855 137 FWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLY 216 (582)
T ss_pred HHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHH
Confidence 00 00000 0 0 0000000 00000
Q ss_pred Hh----cCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHH
Q 002194 818 VE----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (954)
Q Consensus 818 ~~----~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (954)
.. ........++++|+|+++|++|..+| ......+.+.+. ..++++++ +||... .+....+.+.|.+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~f 288 (582)
T PRK05855 217 RANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEF 288 (582)
T ss_pred HhhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHH
Confidence 00 00001133478999999999999998 777766654432 24666776 589875 56677788889999
Q ss_pred HHHh
Q 002194 894 LQKY 897 (954)
Q Consensus 894 l~~~ 897 (954)
+.+.
T Consensus 289 l~~~ 292 (582)
T PRK05855 289 VDAV 292 (582)
T ss_pred HHhc
Confidence 9874
No 181
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.01 E-value=1.2e-07 Score=104.86 Aligned_cols=267 Identities=15% Similarity=0.190 Sum_probs=148.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-
Q 002194 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP- 186 (954)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~- 186 (954)
....+.+++||++++|..+... . ... ..|..+.+..+. +....+...+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~--------------------~---~~~------g~v~~~~i~~~~--g~L~~~~~~~~ 84 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEG--------------------S---GDS------GGVSSYRIDPDT--GTLTLLNSVPS 84 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETT--------------------S---STT------TEEEEEEEETTT--TEEEEEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEcc--------------------c---cCC------CCEEEEEECCCc--ceeEEeeeecc
Confidence 3456788999999888766552 0 000 255666665441 2333332222
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Cceeec---ccC----CC--ccccccccceeEecCCe
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPL---FQS----PD--IYLNAIFDNFVWVNNST 256 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~l---t~~----~~--~~~~~~~~~~~wspDG~ 256 (954)
.+....+++.+|||++|+.+.. . ...|.+++++. |..... ... +. .........+.++|||+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany------~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANY------G--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEET------T--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred CCCCcEEEEEecCCCEEEEEEc------c--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 3345678899999998887653 2 33455545443 443332 111 00 00001134688999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC--ceeE-----c
Q 002194 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKE-----I 328 (954)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G--~~~~-----l 328 (954)
++++.- + +...|+.+++ .+ +... +
T Consensus 157 ~v~v~d-----------------------------------l-------------G~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 157 FVYVPD-----------------------------------L-------------GADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEE-----------------------------------T-------------TTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred EEEEEe-----------------------------------c-------------CCCEEEEEEEeCCCceEEEeecccc
Confidence 998760 0 3445777777 32 2322 2
Q ss_pred CCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceee
Q 002194 329 GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 329 ~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
..+.+.+.+.|+|||+++++.... .+.|.+++.+ .+..+.+...... |..+.+. .....+++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~------------s~~v~v~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~~~~i~i 252 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNEL------------SNTVSVFDYDPSDGSLTEIQTISTL---PEGFTGE-NAPAEIAI 252 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETT------------TTEEEEEEEETTTTEEEEEEEEESC---ETTSCSS-SSEEEEEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCC------------CCcEEEEeecccCCceeEEEEeeec---ccccccc-CCceeEEE
Confidence 333667889999999998887633 3377788777 4544443322111 1000011 13456899
Q ss_pred ccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee--c-ccccCceeeccCCceEEEEEeccccceEE
Q 002194 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
||||+.+++. ++ ..+.|.++++++ .++..+.+.. . ......++++|||++|+.+....+ ...+
T Consensus 253 spdg~~lyvs-nr-----------~~~sI~vf~~d~-~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~-~v~v 318 (345)
T PF10282_consen 253 SPDGRFLYVS-NR-----------GSNSISVFDLDP-ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN-TVSV 318 (345)
T ss_dssp -TTSSEEEEE-EC-----------TTTEEEEEEECT-TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT-EEEE
T ss_pred ecCCCEEEEE-ec-----------cCCEEEEEEEec-CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-eEEE
Confidence 9999965554 22 245677777622 3345555422 1 223577899999999988754443 4778
Q ss_pred EEEcCCCC
Q 002194 484 WVISPGSK 491 (954)
Q Consensus 484 ~~~d~~~~ 491 (954)
|.+|.++|
T Consensus 319 f~~d~~tG 326 (345)
T PF10282_consen 319 FDIDPDTG 326 (345)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 88887776
No 182
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.00 E-value=9.9e-09 Score=113.05 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=101.9
Q ss_pred CCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCC-----Ccc---c--------
Q 002194 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-----DEE---A-------- 731 (954)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G-----~~~---~-------- 731 (954)
+++|+||+.||-. ++...+..++..||++||+|++++.++..+.. ... .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3499999999942 22333446788999999999998877654310 000 0
Q ss_pred ------------ch------hhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEeeChHHHHH
Q 002194 732 ------------ND------RFVEQLVACAEAAVEEVVRR--------------------GVAHPSKIAVGGHSYGAFMT 773 (954)
Q Consensus 732 ------------~~------~~~~~~~~D~~~av~~l~~~--------------------~~~d~~ri~l~G~S~GG~~a 773 (954)
.. .....-..|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 00 01112257777888877641 34678899999999999999
Q ss_pred HHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHH
Q 002194 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~ 853 (954)
+.++.+. .+|+|+|+..|.. ++-.. ....+++.|+|+|+.+. ..- ..+...
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~--------~Pl~~----------------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWM--------FPLGD----------------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES-----------TTS-G----------------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcc--------cCCCc----------------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9999888 7899999988742 11000 00134678999999884 321 233333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCCcCC------Cc------------ccH----HHHHHHHHHHHHHhccc
Q 002194 854 FFNALKGHGALCRLVILPFESHGYA------AR------------ESI----MHVLWETDRWLQKYCVS 900 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~~----~~~~~~i~~fl~~~l~~ 900 (954)
+.+ +...+....++.+.|..|.-. .+ .+. +...+.+++||++||+.
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~ 361 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGL 361 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 333 223445678889999999521 00 122 23345689999999864
No 183
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.99 E-value=3.4e-08 Score=108.85 Aligned_cols=304 Identities=15% Similarity=0.077 Sum_probs=146.7
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002194 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (954)
Q Consensus 113 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~ 192 (954)
.+.|||||+++.....+ +.|.++|+.. .+ .+.....+....
T Consensus 41 ~~~~s~Dgr~~yv~~rd---------------------------------g~vsviD~~~----~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRD---------------------------------GTVSVIDLAT----GK--VVATIKVGGNPR 81 (369)
T ss_dssp EEE-TT-SSEEEEEETT---------------------------------SEEEEEETTS----SS--EEEEEE-SSEEE
T ss_pred EEEecCCCCEEEEEcCC---------------------------------CeEEEEECCc----cc--EEEEEecCCCcc
Confidence 35789999997776543 4688989854 22 232233455678
Q ss_pred ceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc---ccccccceeEecCCeEEEEEecCCCCCC
Q 002194 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY---LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 193 ~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~---~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
..++||||++|+.... ...++-++|.++.+..+........ ....+..+.-+|+...+++..
T Consensus 82 ~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l------- 146 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL------- 146 (369)
T ss_dssp EEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-------
T ss_pred eEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE-------
Confidence 8999999999877653 2568999999887765543322110 000022344456665444431
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc---eeEcCCCccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~---~~~l~~~~~~~~~~~SpDGk~ 345 (954)
....+||.+|. +.. .+.+.......+..|+||||+
T Consensus 147 -----------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 147 -----------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp -----------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred -----------------------------------------ccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 03457999997 442 223323344567889999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccC-CCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL-PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~-~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
++...+..+ .+-++|..+++...+... ......+.....+ -...+.|.-.+.........
T Consensus 186 ~~va~~~sn------------~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph--p~~g~vw~~~~~~~~~~~~i----- 246 (369)
T PF02239_consen 186 FLVAANGSN------------KIAVIDTKTGKLVALIDTGKKPHPGPGANFPH--PGFGPVWATSGLGYFAIPLI----- 246 (369)
T ss_dssp EEEEEGGGT------------EEEEEETTTTEEEEEEE-SSSBEETTEEEEEE--TTTEEEEEEEBSSSSEEEEE-----
T ss_pred eeecccccc------------eeEEEeeccceEEEEeeccccccccccccccC--CCcceEEeeccccceecccc-----
Confidence 988764432 777888886655443221 1111111100000 01123454333322221000
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEE-EecCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI-LFDRSS 503 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~-l~~~~~ 503 (954)
+.+.+.+++. .+-...+.+... +..-.+.-+||+++|+....-+.....|.++|.++- +... +.....
T Consensus 247 ------g~~~v~v~d~--~~wkvv~~I~~~-G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~ 315 (369)
T PF02239_consen 247 ------GTDPVSVHDD--YAWKVVKTIPTQ-GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPG 315 (369)
T ss_dssp ------E--TTT-STT--TBTSEEEEEE-S-SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT
T ss_pred ------cCCccccchh--hcCeEEEEEECC-CCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCC
Confidence 0111112221 111122333322 222557779999999887322222467999998874 2111 111111
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 566 (954)
..+.. +.|++||+.+++..... ...|.++|.+|.+...
T Consensus 316 ~~~~h------~ef~~dG~~v~vS~~~~-------------------~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 316 KRVVH------MEFNPDGKEVWVSVWDG-------------------NGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --EEE------EEE-TTSSEEEEEEE---------------------TTEEEEEETTTTEEEE
T ss_pred CcEec------cEECCCCCEEEEEEecC-------------------CCEEEEEECCCcEEEE
Confidence 00111 78999999998887432 1159999998876543
No 184
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.97 E-value=6.5e-08 Score=110.34 Aligned_cols=270 Identities=17% Similarity=0.075 Sum_probs=151.9
Q ss_pred cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPK 271 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~ 271 (954)
....+||||++|||..+.+ +++...|+++|+++|+...-. ..... ...+.|++||+.|+|+.........
T Consensus 127 ~~~~~Spdg~~la~~~s~~----G~e~~~l~v~Dl~tg~~l~d~-i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~- 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG----GSEWYTLRVFDLETGKFLPDG-IENPK----FSSVSWSDDGKGFFYTRFDEDQRTS- 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEET----TSSEEEEEEEETTTTEEEEEE-EEEEE----SEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeeECCCCCEEEEEecCC----CCceEEEEEEECCCCcCcCCc-ccccc----cceEEEeCCCCEEEEEEeCcccccc-
Confidence 3578999999999998654 778899999999998553211 01110 2248999999999998322111100
Q ss_pred CCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce--eEcCCC---cc-ccccccCCCCc
Q 002194 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP---AV-YTSLDPSPDEK 344 (954)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~--~~l~~~---~~-~~~~~~SpDGk 344 (954)
.-....+||+..+ ++.. ..|... .. ..++..|+||+
T Consensus 197 -------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 197 -------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp -------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred -------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0002346888888 5532 344433 22 45788999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCc-----eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-----FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-----~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+|++.+..... ...+++.+++.. ..+.+..... +.... ....|..+++.++.
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~~~-v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVEYY-VDHHGDRLYILTND 296 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-EEE-EEEETTEEEEEE-T
T ss_pred EEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceEEE-EEccCCEEEEeeCC
Confidence 99988765432 137899998864 4455544211 11111 11124445444331
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCC---ce-EEeecccccCceeeccCCceEEEEEeccccceEEEEEcCC-CCCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDVA 494 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~-~~~~~ 494 (954)
+ ..+..|+.+++ +... .. .+........--.++..+.+|+.....++ ..+|+++++. +. .
T Consensus 297 --~-------a~~~~l~~~~l---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~~~~--~ 361 (414)
T PF02897_consen 297 --D-------APNGRLVAVDL---ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLDDGK--E 361 (414)
T ss_dssp --T--------TT-EEEEEET---TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-EEEEEEEETT-TE--E
T ss_pred --C-------CCCcEEEEecc---cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-ccEEEEEECCCCc--E
Confidence 1 33568888886 3222 22 44444433333345566778888777665 4889999998 42 2
Q ss_pred cEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEec
Q 002194 495 PRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (954)
Q Consensus 495 ~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 569 (954)
...+.-.....+.+ +...+++..+.|... +... .+.+|.+|+++++.+.+..
T Consensus 362 ~~~~~~p~~g~v~~------~~~~~~~~~~~~~~s--------------s~~~---P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 362 SREIPLPEAGSVSG------VSGDFDSDELRFSYS--------------SFTT---PPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEESSSSSEEEE------EES-TT-SEEEEEEE--------------ETTE---EEEEEEEETTTTCEEEEEE
T ss_pred EeeecCCcceEEec------cCCCCCCCEEEEEEe--------------CCCC---CCEEEEEECCCCCEEEEEe
Confidence 23332222222111 334556666666653 3332 3459999999999887753
No 185
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.97 E-value=1.5e-06 Score=93.52 Aligned_cols=291 Identities=13% Similarity=0.084 Sum_probs=145.9
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
..+|+++|.++++.......... ... ..||||+.||.+... +.|.
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~--------------------------~~R~--- 70 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTV--------------------------YSRI--- 70 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecc--------------------------cccc---
Confidence 38999999998776544433332 223 499999999987210 0010
Q ss_pred hccCccccccccccccceEEEEEe-CCc-eeEcCCC--------ccccccccCCCCcEEEEEeecCCcccccccCCCCcc
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQ 367 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~--------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~ 367 (954)
.... ....|-++|+ +++ ...|.-+ .....+++|||||+|++..... ...
T Consensus 71 --~~G~--------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-----------~~~ 129 (352)
T TIGR02658 71 --ARGK--------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-----------SPA 129 (352)
T ss_pred --ccCC--------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----------CCE
Confidence 0000 2234777888 664 3344432 1223688999999998765331 237
Q ss_pred eEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC
Q 002194 368 VGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE 446 (954)
Q Consensus 368 l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 446 (954)
+.++|+..+++ .++.........+. .....+....||+.+.+..+. .+....-.
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t------~e~~~~~~~~Dg~~~~v~~d~------------~g~~~~~~------- 184 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPT------ANDTFFMHCRDGSLAKVGYGT------------KGNPKIKP------- 184 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEe------cCCccEEEeecCceEEEEecC------------CCceEEee-------
Confidence 88999986654 33433111100010 111223444555543332111 11111100
Q ss_pred CceEEeec--ccccCceeecc-CCceEEEEEeccccceEEEEEcCCCCCCCcEE---E-ecCCCCCccCCCCC-CCeeec
Q 002194 447 GPEILHKL--DLRYGGISWCD-DSLALVYESWYKTRRTRTWVISPGSKDVAPRI---L-FDRSSEDVYSDPGS-PMMRRT 518 (954)
Q Consensus 447 ~~~~l~~~--~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~---l-~~~~~~~~~~~~~~-~~~~~s 518 (954)
..+... +.-...+.|++ ||++++.+ .. ..++.+|+.+....... + +.....+- -.++. -.++++
T Consensus 185 --~~vf~~~~~~v~~rP~~~~~dg~~~~vs-~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~-wrP~g~q~ia~~ 256 (352)
T TIGR02658 185 --TEVFHPEDEYLINHPAYSNKSGRLVWPT-YT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADG-WRPGGWQQVAYH 256 (352)
T ss_pred --eeeecCCccccccCCceEcCCCcEEEEe-cC----CeEEEEecCCCcceecceeeeccccccccc-cCCCcceeEEEc
Confidence 111111 11123346677 77665554 33 46999997654211111 1 11110000 01121 116778
Q ss_pred cCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEE
Q 002194 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKI 598 (954)
Q Consensus 519 pdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 598 (954)
|||+.++....+. ...+......+++++|.++++...-...... .. ...+|+|++.+
T Consensus 257 ~dg~~lyV~~~~~-----------~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-----~~-------~iavS~Dgkp~ 313 (352)
T TIGR02658 257 RARDRIYLLADQR-----------AKWTHKTASRFLFVVDAKTGKRLRKIELGHE-----ID-------SINVSQDAKPL 313 (352)
T ss_pred CCCCEEEEEecCC-----------ccccccCCCCEEEEEECCCCeEEEEEeCCCc-----ee-------eEEECCCCCeE
Confidence 8888776644221 0011112234799999999987655443322 11 24689999945
Q ss_pred EEEEecCCCCceEEEEECCCCcee
Q 002194 599 LTSKESKTENTQYYIQSWPDKKSC 622 (954)
Q Consensus 599 ~~~~~s~~~p~~l~~~~~~~g~~~ 622 (954)
+|..... ...+.++|..+++..
T Consensus 314 lyvtn~~--s~~VsViD~~t~k~i 335 (352)
T TIGR02658 314 LYALSTG--DKTLYIFDAETGKEL 335 (352)
T ss_pred EEEeCCC--CCcEEEEECcCCeEE
Confidence 5444432 345889998887543
No 186
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.97 E-value=1.7e-08 Score=131.42 Aligned_cols=199 Identities=15% Similarity=0.215 Sum_probs=120.4
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch----------hhHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----------RFVEQL 739 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----------~~~~~~ 739 (954)
.|.||++||..... ..| ......| ..+|.|+. .+..|+|.+.... ......
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~---~Dl~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCIS---IDLPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEE---EcCCCCCCCCCccccccccccccCCHHHH
Confidence 57899999963211 111 1123333 45799999 5666777764321 112333
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC------C------------
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP------F------------ 801 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~------~------------ 801 (954)
.+++.+.++.+ +.+++.++||||||.+++.++.++|++++++|++++........ .
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 34443333332 34689999999999999999999999999999887532110000 0
Q ss_pred CCc---c--ccchhhhc-------------------H----HHHHhc------CcccccCCCCCCEEEEEeCCCCCCCCc
Q 002194 802 GFQ---N--EDRTLWEA-------------------T----STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTL 847 (954)
Q Consensus 802 ~~~---~--~~~~~~~~-------------------~----~~~~~~------sp~~~~~~~~~P~Lii~G~~D~~v~~~ 847 (954)
... . .....|.. . ..+... +....+.++++|+|+++|++|..++
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-- 1583 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-- 1583 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH--
Confidence 000 0 00000000 0 000000 0112356788999999999998753
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 848 TMQSDRFFNALKGHG--------ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 848 ~~~~~~~~~~l~~~g--------~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
..+.++.+.+.... ..++++++|++||... .++...+.+.|.+||.+.
T Consensus 1584 -~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1584 -QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred -HHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 56677776665420 1268999999999874 677788899999999874
No 187
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1.2e-08 Score=103.71 Aligned_cols=221 Identities=19% Similarity=0.198 Sum_probs=127.0
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC----cE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----FA 714 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~~ 714 (954)
.+.+.+.+.-..+....+|+|++|.+.. ++|++++.||-.+. .+... ......+...| -+
T Consensus 69 ~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~-------------~~g~i-~~~~dsli~~g~i~pai 132 (299)
T COG2382 69 VEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWF-------------RSGRI-PRILDSLIAAGEIPPAI 132 (299)
T ss_pred hhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHH-------------hcCCh-HHHHHHHHHcCCCCCce
Confidence 3444554444456778889999987654 49999999983211 01111 12344455544 55
Q ss_pred EEEcCCCCCCCCCCccc-chhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 715 ILGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
++..++.+-.-+..+.. +..+...+.. +.+=++.+.. .-+.++-+|+|.|+||.++++++.++|++|..+++.+
T Consensus 133 ~vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~S 209 (299)
T COG2382 133 LVGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQS 209 (299)
T ss_pred EEecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccC
Confidence 55544432211111111 1222222232 3334444442 2456789999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC
Q 002194 792 GAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP 871 (954)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~ 871 (954)
|.+++...... .....++ ..+-...+.....-++...++.+.+ ....+++++.|+..|.+..+..|+
T Consensus 210 ps~~~~~~~~~---~~~~~~~------~l~~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yre~~ 276 (299)
T COG2382 210 GSFWWTPLDTQ---PQGEVAE------SLKILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYREYP 276 (299)
T ss_pred CccccCccccc---cccchhh------hhhhhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceeeecC
Confidence 97664332110 0111111 1111222233334233333444444 455788999999999999999999
Q ss_pred CCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 872 FESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 872 ~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
| ||.+.. +...+.++|...+
T Consensus 277 G-gHdw~~------Wr~~l~~~L~~l~ 296 (299)
T COG2382 277 G-GHDWAW------WRPALAEGLQLLL 296 (299)
T ss_pred C-CCchhH------hHHHHHHHHHHhh
Confidence 9 998742 2334555555443
No 188
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.94 E-value=8.2e-07 Score=90.88 Aligned_cols=290 Identities=14% Similarity=0.103 Sum_probs=166.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.+++++|+-.++|.-..+ .--+||++.+ | ...-.++++. .
T Consensus 66 svFavsl~P~~~l~aTGGgD---------------------------------D~AflW~~~~-g--e~~~eltgHK--D 107 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD---------------------------------DLAFLWDIST-G--EFAGELTGHK--D 107 (399)
T ss_pred ceEEEEeCCCCceEEecCCC---------------------------------ceEEEEEccC-C--cceeEecCCC--C
Confidence 56677888866666655443 3568999864 3 2455666543 4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....||-||..||. ++-...|.++...+|..+.....+... +..+.|.|-+.+|++.
T Consensus 108 SVt~~~FshdgtlLAT---------GdmsG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp~a~illAG-------- 166 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT---------GDMSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHPRAHILLAG-------- 166 (399)
T ss_pred ceEEEEEccCceEEEe---------cCCCccEEEEEcccCceEEEeecccCc----eEEEEecccccEEEee--------
Confidence 7999999999999987 334556666666666655443322222 6789999999888865
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
+ ....+|.+.+ ++ ..+.+..+ ...+.-.|.||||+|
T Consensus 167 -------------~----------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 167 -------------S----------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred -------------c----------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 1 2245888888 54 44444444 667778899999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc----cCc--cceeeccCCCCceEEEEe
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR----KGM--RSINWRSDKPSTLYWAET 419 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~----~g~--~~~~wspDg~~i~~~~~~ 419 (954)
+....+ +.|.+|+..++++ ..++........+..++... .+. ..+.+...+..-+.....
T Consensus 206 ~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 206 LTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred EEEecC-------------ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 988743 3899999986643 34442221111111110000 000 001111111111111000
Q ss_pred ---------ccCCCccc-------------cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 420 ---------QDGGDAKV-------------EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 420 ---------~~~~~~~~-------------~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.+.....+ -.+-.+.|.+||. .....|.+-.++..+..+.|-+ ..+|+.+.- +
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~-~ 347 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTACA-N 347 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeecc-C
Confidence 00000000 1123457888885 5566676666666688889988 555655432 2
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..|+.+|..+| ..+....++...++. ++.+|+++.++-.+
T Consensus 348 ---g~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 348 ---GKVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred ---ceEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 35777787776 334344444444444 67899998887765
No 189
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.94 E-value=2.2e-09 Score=100.44 Aligned_cols=173 Identities=20% Similarity=0.197 Sum_probs=111.3
Q ss_pred CCcEEEEcCCCCCCCCCCcccchhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 711 RGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
.-+.|++ .|-.|||.+-.++.- .....+|...|++.+... +-+++.|+|+|-||..|+.+|+++++.+...|
T Consensus 70 l~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 3488888 666789988665433 234578888999888775 44789999999999999999999998887777
Q ss_pred EeccCCCCCCC---CC-------CCccccch-------------hhhc----HHHHHhcC---c-ccccCCCCCCEEEEE
Q 002194 789 ARSGAYNRTLT---PF-------GFQNEDRT-------------LWEA----TSTYVEMS---P-FMSANKLKKPILLVH 837 (954)
Q Consensus 789 ~~~~~~~~~~~---~~-------~~~~~~~~-------------~~~~----~~~~~~~s---p-~~~~~~~~~P~Lii~ 837 (954)
...+..-.... .+ .+....+. .|.. ...+...- - -..+.++++|+||+|
T Consensus 144 iwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~h 223 (277)
T KOG2984|consen 144 IWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMH 223 (277)
T ss_pred eecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEee
Confidence 66543110000 00 00000111 1211 01111100 0 123567899999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
|+.|+.|+ -.+.- +...++.. .++.++|..+|.+. ....+++...+++||+.
T Consensus 224 G~kDp~~~--~~hv~-fi~~~~~~---a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 224 GGKDPFCG--DPHVC-FIPVLKSL---AKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CCcCCCCC--CCCcc-chhhhccc---ceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 99999997 44433 33333333 58889999999985 44556777888888874
No 190
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.92 E-value=5.8e-08 Score=103.04 Aligned_cols=249 Identities=12% Similarity=0.036 Sum_probs=140.2
Q ss_pred CCCCCCcceeeEeceEEEEccCCC-CCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC
Q 002194 151 GKCNTRSRMSFYTGIGIHQLFPDG-KLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG 229 (954)
Q Consensus 151 ~~~~~~~~~~~~~~l~l~~~~~~g-~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g 229 (954)
+.+.....++.+..+..||..+=. +...-++|.. .++..+...+|||.|.+|+.++ |..+.-++|-+|-
T Consensus 177 p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P-~E~h~i~sl~ys~Tg~~iLvvs---------g~aqakl~DRdG~ 246 (641)
T KOG0772|consen 177 PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP-CETHQINSLQYSVTGDQILVVS---------GSAQAKLLDRDGF 246 (641)
T ss_pred CCCceeeeccccceEEEEecccccccchhhhccCc-ccccccceeeecCCCCeEEEEe---------cCcceeEEccCCc
Confidence 333333333334678899984211 1112234421 1333788999999999999976 3667777777775
Q ss_pred ceeecccCCC--------ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccC
Q 002194 230 KARPLFQSPD--------IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKD 301 (954)
Q Consensus 230 ~~~~lt~~~~--------~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~ 301 (954)
+......+.. .+..+.+....|.|+.+-.|.+.. .
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--------------------~----------------- 289 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--------------------Y----------------- 289 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--------------------C-----------------
Confidence 5443322211 111223456679999987776621 1
Q ss_pred ccccccccccccceEEEEEeCCceeEc----CCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 302 EYDEDLFDYYATTQLVLVSLDGTVKEI----GPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 302 ~~d~~~~~~~~~~~l~~~~~~G~~~~l----~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
| ++-+||-++-.....++ ..+ -.++..+|+|||++||..-.+ +.|.+|+..
T Consensus 290 --D-------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-------------GSIQ~W~~~ 347 (641)
T KOG0772|consen 290 --D-------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD-------------GSIQIWDKG 347 (641)
T ss_pred --C-------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC-------------CceeeeecC
Confidence 1 34445555542221111 111 345788999999998876633 378899975
Q ss_pred CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE-Eee
Q 002194 375 GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHK 453 (954)
Q Consensus 375 g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~-l~~ 453 (954)
+..+++......+.. ...++..++||+||+.|+-- +..+.+-+|++ .+-+++-. .+.
T Consensus 348 ~~~v~p~~~vk~AH~-------~g~~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDL--rq~kkpL~~~tg 405 (641)
T KOG0772|consen 348 SRTVRPVMKVKDAHL-------PGQDITSISFSYDGNYLLSR-------------GFDDTLKVWDL--RQFKKPLNVRTG 405 (641)
T ss_pred CcccccceEeeeccC-------CCCceeEEEeccccchhhhc-------------cCCCceeeeec--cccccchhhhcC
Confidence 333222211110000 00245789999999987654 44667888886 22222211 122
Q ss_pred c--ccccCceeeccCCceEEEEEeccc--cceEEEEEcCCC
Q 002194 454 L--DLRYGGISWCDDSLALVYESWYKT--RRTRTWVISPGS 490 (954)
Q Consensus 454 ~--~~~~~~~~~spDg~~l~~~~~~~~--~~~~l~~~d~~~ 490 (954)
. ...-....||||.+.|+......+ ....|+.+|..+
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 1 223356899999998887654221 234688888766
No 191
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.90 E-value=3.2e-08 Score=104.50 Aligned_cols=242 Identities=9% Similarity=0.022 Sum_probs=148.7
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCC
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~ 188 (954)
.++++.|.| .|..|+....+ ..|+||++-+++ +-.+...+ +.
T Consensus 216 gvsai~~fp~~~hLlLS~gmD---------------------------------~~vklW~vy~~~--~~lrtf~g--H~ 258 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMD---------------------------------GLVKLWNVYDDR--RCLRTFKG--HR 258 (503)
T ss_pred ccchhhhccceeeEEEecCCC---------------------------------ceEEEEEEecCc--ceehhhhc--ch
Confidence 366788888 67666666654 579999996544 22222222 22
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..+.||.+|..++.++- ...|-++|+++|+...-...... ..-+.+.||+..++++.-
T Consensus 259 k~Vrd~~~s~~g~~fLS~sf---------D~~lKlwDtETG~~~~~f~~~~~-----~~cvkf~pd~~n~fl~G~----- 319 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASF---------DRFLKLWDTETGQVLSRFHLDKV-----PTCVKFHPDNQNIFLVGG----- 319 (503)
T ss_pred hhhhhhhccccCCeeeeeec---------ceeeeeeccccceEEEEEecCCC-----ceeeecCCCCCcEEEEec-----
Confidence 47899999999999888653 56788889999987655443332 446778899966666510
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCC-C-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk~ 345 (954)
....|..+|. +|++.+-.. . +.+..+.|-++|++
T Consensus 320 -------------------------------------------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 320 -------------------------------------------SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred -------------------------------------------CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 2245778888 887554443 3 77888999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
.+.++.+. .+.+|+........+...+.. -....+..+|.++.++.-
T Consensus 357 FissSDdk-------------s~riWe~~~~v~ik~i~~~~~-----------hsmP~~~~~P~~~~~~aQ--------- 403 (503)
T KOG0282|consen 357 FISSSDDK-------------SVRIWENRIPVPIKNIADPEM-----------HTMPCLTLHPNGKWFAAQ--------- 403 (503)
T ss_pred EeeeccCc-------------cEEEEEcCCCccchhhcchhh-----------ccCcceecCCCCCeehhh---------
Confidence 99988553 778888764322111111111 122356778888743322
Q ss_pred cccccCCCeEEEEecCCCC-CCCceEEeec--ccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQ-GEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~-g~~~~~l~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+-.+.++++.+.+.- -...++...+ .+..-.+.|||||++|++...+ +.++.+|..+.
T Consensus 404 ----s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd----G~v~~wdwkt~ 464 (503)
T KOG0282|consen 404 ----SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD----GKVNFWDWKTT 464 (503)
T ss_pred ----ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC----ccEEEeechhh
Confidence 334456555531111 1111122222 2223358999999999987433 45777777663
No 192
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.89 E-value=1.4e-08 Score=104.91 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=75.8
Q ss_pred cHHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHH
Q 002194 702 STSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLA 778 (954)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~ 778 (954)
...+..|...||.|+...... +.|+|.+ .....++|+..+|+||+... .-..++|+|+|||-|..-++.++.
T Consensus 53 ~~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~ 127 (303)
T PF08538_consen 53 PDLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLS 127 (303)
T ss_dssp HHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHH
T ss_pred HHHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHh
Confidence 345555656799999854433 4566654 35678999999999999872 235679999999999999999987
Q ss_pred hCC-----CcccEEEEeccCCCCCCCCCCCcc-cc-c-------------------------hhh-hcH---HHHHh-cC
Q 002194 779 HAP-----HLFCCGIARSGAYNRTLTPFGFQN-ED-R-------------------------TLW-EAT---STYVE-MS 821 (954)
Q Consensus 779 ~~p-----~~~~a~v~~~~~~~~~~~~~~~~~-~~-~-------------------------~~~-~~~---~~~~~-~s 821 (954)
+.. ..+.++|+.+|++|++........ +. . ..+ ..+ ..|.. .+
T Consensus 128 ~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s 207 (303)
T PF08538_consen 128 SPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFTPLVFYDTPITAYRFLSLAS 207 (303)
T ss_dssp H-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----GGTTT-SS---HHHHHT-S-
T ss_pred ccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeeccccccccCCCcccHHHHHhccC
Confidence 652 569999999999997765443211 00 0 000 000 00000 00
Q ss_pred c----------------ccccCCCCCCEEEEEeCCCCCCCCchH-HHHHHHHHHHhCCC----cEEEEEeCCCCCcCCCc
Q 002194 822 P----------------FMSANKLKKPILLVHGEEDNNSGTLTM-QSDRFFNALKGHGA----LCRLVILPFESHGYAAR 880 (954)
Q Consensus 822 p----------------~~~~~~~~~P~Lii~G~~D~~v~~~~~-~~~~~~~~l~~~g~----~~~~~~~~~~~H~~~~~ 880 (954)
| .....++.+|+|++.+++|+.|| .. +-.++.++++..-. ...--++||++|.+...
T Consensus 208 ~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP--~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~ 285 (303)
T PF08538_consen 208 PGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP--PWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGP 285 (303)
T ss_dssp SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------------------------------
T ss_pred CCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec--cccccccccccccccccccccccccccccccccccccc
Confidence 0 11345677899999999999997 43 34556666665422 12345899999998654
Q ss_pred cc---HHHHHHHHHHHHH
Q 002194 881 ES---IMHVLWETDRWLQ 895 (954)
Q Consensus 881 ~~---~~~~~~~i~~fl~ 895 (954)
.. .+.+.+++..||+
T Consensus 286 ~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 286 SQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ------------------
T ss_pred ccccccccccccccccCC
Confidence 43 2355666666653
No 193
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.89 E-value=1.1e-07 Score=110.52 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=112.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..|+.||||++++|+....+ ...++..+||+++. +++.+++|.... ...+.|+|||+.|+|........
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~~- 421 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTVV- 421 (591)
T ss_pred CcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcceE-
Confidence 6789999999999999986542 23346789999997 556688876543 56899999999999883210000
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
+ +... .+..+||.+++ .|+.++ ...+.+.++.|||||++|+|
T Consensus 422 -----------------------~-----v~~~--------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 422 -----------------------R-----VIRD--------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred -----------------------E-----Eecc--------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEE
Confidence 0 0000 03467999998 666655 32367899999999999999
Q ss_pred EeecCCcccccccCCCCcceEE---EeccCceEEEeccCC-CcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGV---WTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l---~d~~g~~~~~l~~~~-~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
... +++++ ...++++ ..++... ... +......++.|..|++ |+.. ..
T Consensus 465 i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~~l~~-------~l~~~~~~l~W~~~~~-L~V~--~~---- 515 (591)
T PRK13616 465 IIG--------------GKVYLAVVEQTEDGQ-YALTNPREVGP-------GLGDTAVSLDWRTGDS-LVVG--RS---- 515 (591)
T ss_pred EEC--------------CEEEEEEEEeCCCCc-eeecccEEeec-------ccCCccccceEecCCE-EEEE--ec----
Confidence 872 26666 4444554 4443211 000 0101135688999998 4433 11
Q ss_pred ccccccCCCeEEEEecCCCCCCCceE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEI 450 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~ 450 (954)
+....+|.+.+ +|.....
T Consensus 516 -----~~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 516 -----DPEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -----CCCCceEEEec---CCccccc
Confidence 12335788876 5555443
No 194
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.89 E-value=3e-07 Score=93.94 Aligned_cols=274 Identities=12% Similarity=0.118 Sum_probs=155.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+....||.||.+||..-.. +.|.||.+.+ | +....+. ....
T Consensus 108 SVt~~~FshdgtlLATGdms---------------------------------G~v~v~~~st-g--~~~~~~~--~e~~ 149 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMS---------------------------------GKVLVFKVST-G--GEQWKLD--QEVE 149 (399)
T ss_pred ceEEEEEccCceEEEecCCC---------------------------------ccEEEEEccc-C--ceEEEee--cccC
Confidence 46778899999888876543 5788998854 2 2333442 2334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|.|-+..|++ +.....||.+.+..+..-++...++.. ...-.+.||||+|+....+..-..
T Consensus 150 dieWl~WHp~a~illA---------G~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLA---------GSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEEecccccEEEe---------ecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEE
Confidence 6888999998887777 445778999998876566666655432 556679999999997733211110
Q ss_pred C-CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC----------ccccc-
Q 002194 270 P-KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----------AVYTS- 336 (954)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~----------~~~~~- 336 (954)
. .+...|.- .+...++.. ..-+-.+......+.-......+.++. +|++....++ ....+
T Consensus 217 Wn~ktg~p~~-~~~~~e~~~------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 217 WNPKTGQPLH-KITQAEGLE------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred EecCCCceeE-EecccccCc------CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 0 00000000 000000000 000000001111222223344555554 5554444331 11111
Q ss_pred --cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002194 337 --LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (954)
Q Consensus 337 --~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~ 414 (954)
..||.+=...| .+...++|-|||......|.+..++ .++..+.|-+ ...|+
T Consensus 290 e~~~~ss~lpL~A-------------~G~vdG~i~iyD~a~~~~R~~c~he-------------~~V~~l~w~~-t~~l~ 342 (399)
T KOG0296|consen 290 ESIPSSSKLPLAA-------------CGSVDGTIAIYDLAASTLRHICEHE-------------DGVTKLKWLN-TDYLL 342 (399)
T ss_pred hhcccccccchhh-------------cccccceEEEEecccchhheeccCC-------------CceEEEEEcC-cchhe
Confidence 12222222222 2334568999999988888887765 3456778877 33332
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
-. ...+.|+.||+ ..|.....++.+...+..++.+||++.++..+.++. ..++.
T Consensus 343 t~-------------c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~--a~VF~ 396 (399)
T KOG0296|consen 343 TA-------------CANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT--ALVFE 396 (399)
T ss_pred ee-------------ccCceEEeeec--cccceEEEEecCchheeEEEEcCCCcEEEEecCCCe--EEEEe
Confidence 22 34668999996 555555666888888889999999999998876654 44443
No 195
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.86 E-value=1.1e-07 Score=91.31 Aligned_cols=115 Identities=22% Similarity=0.236 Sum_probs=89.9
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEE
Q 002194 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPIL 834 (954)
Q Consensus 755 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~L 834 (954)
.++.+||++.|.|+||.++++++..+|..+.+.+..+++........ ..+-+.. + .+|++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~----------------~~~~~~~---~-~~~i~ 148 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGL----------------PGWLPGV---N-YTPIL 148 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhc----------------cCCcccc---C-cchhh
Confidence 47889999999999999999999999777777777777654221110 0000100 1 68999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 835 ii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..||+.|++|| ..-+....+.|+..+..+++..|++.+|.... ..++.+..|+.+
T Consensus 149 ~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 149 LCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred eecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999998752 346777888876
No 196
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.2e-07 Score=94.97 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=109.6
Q ss_pred ccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 336 ~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
++-..-.+++|+..+.+ .+|.+|++.|.....+...... ....+.||||+.|+.
T Consensus 192 ~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~GRFia~ 245 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDGRFIAV 245 (420)
T ss_pred EEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeCCCCcEEEE
Confidence 34555667888877744 3899999998766655543221 134679999997776
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCC--C---ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--G---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.--+. .-.+|-.-. ..+|. + .-.|..+...+...+||+++++++..+.++. .+||..|..-
T Consensus 246 ~gFTp-----------DVkVwE~~f-~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~--wriwdtdVrY 311 (420)
T KOG2096|consen 246 SGFTP-----------DVKVWEPIF-TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK--WRIWDTDVRY 311 (420)
T ss_pred ecCCC-----------CceEEEEEe-ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc--EEEeeccceE
Confidence 51111 112322211 01221 1 1234556667788999999999998876654 8899888643
Q ss_pred CC-CCcEEEecCCCCCccCCCCCC-CeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 491 KD-VAPRILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 491 ~~-~~~~~l~~~~~~~~~~~~~~~-~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
.. ..|.++-..+... ....+.| .+..||.|+.++..... .|.++..++|+...-.
T Consensus 312 ~~~qDpk~Lk~g~~pl-~aag~~p~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPL-HAAGSEPVRLELSPSGDSLAVSFGS----------------------DLKVFASEDGKDYPEL 368 (420)
T ss_pred ecCCCchHhhcCCcch-hhcCCCceEEEeCCCCcEEEeecCC----------------------ceEEEEcccCccchhH
Confidence 21 2344443322111 1111222 26789999988877621 2667776666543221
Q ss_pred ccCcccccceeEEeccCCccccccccCCEEEEEEe
Q 002194 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (954)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (954)
..- .+.... ..+|++||++++....
T Consensus 369 e~~----h~~~Is------~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 369 EDI----HSTTIS------SISYSSDGKYIATCGD 393 (420)
T ss_pred HHh----hcCcee------eEEecCCCcEEeeecc
Confidence 111 111111 2578999988764433
No 197
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.85 E-value=1.2e-07 Score=108.23 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=63.1
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH----HHH
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LLA 778 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~ 778 (954)
.+...|+++||.|++ .+..|.|.+.....+.....+++.++++++++. .+.+++.++|||+||.+++. +++
T Consensus 211 Slv~~L~~qGf~V~~---iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFV---ISWRNPDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEE---EECCCCCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 467889999999999 445566655443333344556688888888865 34568999999999998632 344
Q ss_pred hC-CCcccEEEEeccCCC
Q 002194 779 HA-PHLFCCGIARSGAYN 795 (954)
Q Consensus 779 ~~-p~~~~a~v~~~~~~~ 795 (954)
.. +++++.++.++...|
T Consensus 286 ~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLD 303 (532)
T ss_pred hCCCCccceEEEEecCcC
Confidence 44 678999998887655
No 198
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.84 E-value=2.1e-07 Score=117.28 Aligned_cols=227 Identities=13% Similarity=0.155 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCc-ccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
+..+-|.|..-+..++...|.||++||..... ..|... .......|+++||.|++++. |.+.
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~-----------~~~d~~~~~s~v~~L~~~g~~v~~~d~------G~~~ 111 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA-----------DMWDVTRDDGAVGILHRAGLDPWVIDF------GSPD 111 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc-----------cceecCCcccHHHHHHHCCCEEEEEcC------CCCC
Confidence 44455666542111111247788899964221 122211 11235678899999999652 2221
Q ss_pred cch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCcccEEEEeccCCCCCCC-CCC--
Q 002194 731 AND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT-PFG-- 802 (954)
Q Consensus 731 ~~~----~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~~~~~~-~~~-- 802 (954)
... ......+.++.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+++...|.... +..
T Consensus 112 ~~~~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~ 188 (994)
T PRK07868 112 KVEGGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIP 188 (994)
T ss_pred hhHcCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccch
Confidence 111 112333445666666665543 24799999999999998888754 4589999886655432100 000
Q ss_pred --------------------Ccc--------------------------cc-ch--------------hh-hc-------
Q 002194 803 --------------------FQN--------------------------ED-RT--------------LW-EA------- 813 (954)
Q Consensus 803 --------------------~~~--------------------------~~-~~--------------~~-~~------- 813 (954)
... .. .. .| ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~ 268 (994)
T PRK07868 189 AGLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISE 268 (994)
T ss_pred hhhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHH
Confidence 000 00 00 01 00
Q ss_pred -HHHHHhcCcc-----------cccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE-EEeCCCCCcC--C
Q 002194 814 -TSTYVEMSPF-----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL-VILPFESHGY--A 878 (954)
Q Consensus 814 -~~~~~~~sp~-----------~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~--~ 878 (954)
...+...+.+ ..+.++++|+|+++|+.|..+| +..++.+.+.+.. .++ .+++++||.. .
T Consensus 269 ~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~ 342 (994)
T PRK07868 269 LLKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPN----AEVYESLIRAGHFGLVV 342 (994)
T ss_pred HHHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CeEEEEeCCCCCEeeee
Confidence 0000000111 1256788999999999999998 8888888776532 244 5678899974 3
Q ss_pred CcccHHHHHHHHHHHHHHhcccCCCC
Q 002194 879 ARESIMHVLWETDRWLQKYCVSNTAD 904 (954)
Q Consensus 879 ~~~~~~~~~~~i~~fl~~~l~~~~~~ 904 (954)
......+++..+.+||.++-...+.+
T Consensus 343 g~~a~~~~wp~i~~wl~~~~~~~~~~ 368 (994)
T PRK07868 343 GSRAAQQTWPTVADWVKWLEGDGDKP 368 (994)
T ss_pred chhhhhhhChHHHHHHHHhccCCCCC
Confidence 45556788999999999987655444
No 199
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=3.8e-07 Score=91.28 Aligned_cols=263 Identities=13% Similarity=0.109 Sum_probs=154.5
Q ss_pred CChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCC
Q 002194 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (954)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~ 177 (954)
-|+++...++.+......||+-|.+||....+ +.+.|||+.+- +
T Consensus 13 ~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~n---------------------------------G~vvI~D~~T~---~ 56 (405)
T KOG1273|consen 13 YPEELTHTLDNPLAECCQFSRWGDYLAVGCAN---------------------------------GRVVIYDFDTF---R 56 (405)
T ss_pred ChHhhceeccCCccceEEeccCcceeeeeccC---------------------------------CcEEEEEcccc---c
Confidence 45666667777778889999999999998765 57889998542 3
Q ss_pred ceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeE
Q 002194 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~ 257 (954)
..+.|+.+. ..+....||+||+.|+..++ ...+-++|+..|...+-...+.. +....|.|-.+.
T Consensus 57 iar~lsaH~--~pi~sl~WS~dgr~LltsS~---------D~si~lwDl~~gs~l~rirf~sp-----v~~~q~hp~k~n 120 (405)
T KOG1273|consen 57 IARMLSAHV--RPITSLCWSRDGRKLLTSSR---------DWSIKLWDLLKGSPLKRIRFDSP-----VWGAQWHPRKRN 120 (405)
T ss_pred hhhhhhccc--cceeEEEecCCCCEeeeecC---------CceeEEEeccCCCceeEEEccCc-----cceeeeccccCC
Confidence 445555433 46899999999999998764 45677778777765333222322 557778876544
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC--c-c
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--A-V 333 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~-~ 333 (954)
.+++..- ...-+++++ ++..+.|... + .
T Consensus 121 ~~va~~~------------------------------------------------~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 121 KCVATIM------------------------------------------------EESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred eEEEEEe------------------------------------------------cCCcEEEEecCCceeeccCCCcccc
Confidence 4433110 011234455 4444444432 1 1
Q ss_pred ---ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 334 ---YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 334 ---~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
.....|.+-|++|+..... +.+-+++.++-+...-..... -..+.++.++-.|
T Consensus 153 n~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKG 208 (405)
T ss_pred ccccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-----------heeeeEEEEeccC
Confidence 1223488889999876633 278888887654332111100 0234567888888
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCC----CCCCceEEeeccc-----ccCceeeccCCceEEEEEeccccce
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDL-----RYGGISWCDDSLALVYESWYKTRRT 481 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~g~~~~~l~~~~~-----~~~~~~~spDg~~l~~~~~~~~~~~ 481 (954)
+.+++- .....|.+|+.... .+++++...+... .-....||-||.+|+.++. +.-
T Consensus 209 ~~liiN-------------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~---~aH 272 (405)
T KOG1273|consen 209 RFLIIN-------------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA---RAH 272 (405)
T ss_pred cEEEEe-------------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc---cce
Confidence 866554 22335556653111 1223322211111 1134688999999988762 235
Q ss_pred EEEEEcCCCCCCCcEEEecCC
Q 002194 482 RTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 482 ~l~~~d~~~~~~~~~~l~~~~ 502 (954)
.||++....| ..+.+..+.
T Consensus 273 aLYIWE~~~G--sLVKILhG~ 291 (405)
T KOG1273|consen 273 ALYIWEKSIG--SLVKILHGT 291 (405)
T ss_pred eEEEEecCCc--ceeeeecCC
Confidence 6898888776 444444443
No 200
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.84 E-value=1.2e-07 Score=93.36 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=129.2
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcc
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (954)
..+..|+.|.. .+.+|+|+++||. +-++.++....+.++++||+|+++......+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 35677888864 4569999999994 1234445567778899999999976643322
Q ss_pred cchhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEeeChHHHHHHHHHHhCC--CcccEEEEeccCCCCCCCC
Q 002194 731 ANDRFVEQLVACAEAAVEEVVRR--G------VAHPSKIAVGGHSYGAFMTANLLAHAP--HLFCCGIARSGAYNRTLTP 800 (954)
Q Consensus 731 ~~~~~~~~~~~D~~~av~~l~~~--~------~~d~~ri~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~~~~~~~~~~ 800 (954)
.....++++..++++||.+. . ..+.++++++|||.||..|..+|..+. -.|.++|.+.|+.......
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 12356788889999999764 1 256679999999999999999998662 2488888888864321110
Q ss_pred CCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCC-----CCCCCchH--HHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED-----NNSGTLTM--QSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D-----~~v~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
++ .+. ...+.|.. =++..|+++|-...- -..||.+. +=+++|+..|.. +-..+-.+-
T Consensus 164 -------~t---~P~-iLty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~p---~~hfV~~dY 227 (307)
T PF07224_consen 164 -------QT---PPP-ILTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKPP---CAHFVAKDY 227 (307)
T ss_pred -------CC---CCC-eeecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhccc---ceeeeeccc
Confidence 00 000 00111111 135689999874433 11122233 347888888754 555566677
Q ss_pred CCcCCC------------------ccc-----HHHHHHHHHHHHHHhcccC
Q 002194 874 SHGYAA------------------RES-----IMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 874 ~H~~~~------------------~~~-----~~~~~~~i~~fl~~~l~~~ 901 (954)
||.-.- .+. +.-+--.+++||+.||...
T Consensus 228 GHmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 228 GHMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred ccccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 885311 011 1223335899999998654
No 201
>COG0627 Predicted esterase [General function prediction only]
Probab=98.83 E-value=4.4e-08 Score=103.91 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=101.9
Q ss_pred HHcCCCCC--CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC---------CCCCCCccccchhhhc--HHHH
Q 002194 751 VRRGVAHP--SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---------LTPFGFQNEDRTLWEA--TSTY 817 (954)
Q Consensus 751 ~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~ 817 (954)
.+...++. ++.+|+||||||+-|+.+|+++|++|+.+.+++|+++.. ...++-..... .|.. ...+
T Consensus 142 ~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~-~~G~~~~~~w 220 (316)
T COG0627 142 EAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNA-MLGPDSDPAW 220 (316)
T ss_pred HHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHH-hcCCCccccc
Confidence 33334454 389999999999999999999999999999999998754 22222111111 1211 1245
Q ss_pred HhcCcccccCC--------------CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccH
Q 002194 818 VEMSPFMSANK--------------LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (954)
Q Consensus 818 ~~~sp~~~~~~--------------~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (954)
.+++|...+.+ ...++++-+|..|..........+.+.++++..|.+..+..+++..|.+.. .
T Consensus 221 ~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~---w 297 (316)
T COG0627 221 QENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYF---W 297 (316)
T ss_pred cccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHH---H
Confidence 55666665543 446788889999977420123478899999999999999888888998743 3
Q ss_pred HHHHHHHHHHHHHhcc
Q 002194 884 MHVLWETDRWLQKYCV 899 (954)
Q Consensus 884 ~~~~~~i~~fl~~~l~ 899 (954)
...+..++.|+...+.
T Consensus 298 ~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 298 ASQLADHLPWLAGALG 313 (316)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5667788888888775
No 202
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.83 E-value=4.4e-07 Score=96.55 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=136.3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-----eecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
.++..++-|.|-+++. ++-...|..+|..|-.. ++|-+...- .+.+++||+.|..|++++..
T Consensus 169 ~Vsal~~Dp~GaR~~s---------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h----~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVS---------GSLDYTVKFWDFQGMDASMRSFRQLQPCETH----QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred EEEEeeecCCCceeee---------ccccceEEEEecccccccchhhhccCccccc----ccceeeecCCCCeEEEEecC
Confidence 6788899999999877 34466777778777432 344433332 37799999999888776211
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe---CCceeEcCCCccccccccCC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSP 341 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~---~G~~~~l~~~~~~~~~~~Sp 341 (954)
.... . ..+|+....-...+.-|+.|+ .|.+ ..++..+|.|
T Consensus 236 aqak---------------------l----------~DRdG~~~~e~~KGDQYI~Dm~nTKGHi------a~lt~g~whP 278 (641)
T KOG0772|consen 236 AQAK---------------------L----------LDRDGFEIVEFSKGDQYIRDMYNTKGHI------AELTCGCWHP 278 (641)
T ss_pred ccee---------------------E----------EccCCceeeeeeccchhhhhhhccCCce------eeeecccccc
Confidence 1000 0 011111000001222333343 1222 3456678999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+.|-.+.+... ++.+.+|+++. +...++....... +.+..+...+|+|||+.|+-.
T Consensus 279 ~~k~~FlT~s~------------DgtlRiWdv~~~k~q~qVik~k~~~-------g~Rv~~tsC~~nrdg~~iAag---- 335 (641)
T KOG0772|consen 279 DNKEEFLTCSY------------DGTLRIWDVNNTKSQLQVIKTKPAG-------GKRVPVTSCAWNRDGKLIAAG---- 335 (641)
T ss_pred CcccceEEecC------------CCcEEEEecCCchhheeEEeeccCC-------CcccCceeeecCCCcchhhhc----
Confidence 99988777633 34899999984 3223322221111 222334578999999987654
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCCceEE----eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
-..+.|-.|+. +.-+..+... ......+.+++||+||++|+..+.++. .++|.+.--. ++.
T Consensus 336 ---------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--LKvWDLrq~k---kpL 400 (641)
T KOG0772|consen 336 ---------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--LKVWDLRQFK---KPL 400 (641)
T ss_pred ---------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--eeeeeccccc---cch
Confidence 22345666663 1111111111 222347889999999999998877765 5666554322 222
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
..... ....| +... ..||||.+.|+....
T Consensus 401 ~~~tg-L~t~~--~~td-c~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 401 NVRTG-LPTPF--PGTD-CCFSPDDKLILTGTS 429 (641)
T ss_pred hhhcC-CCccC--CCCc-cccCCCceEEEeccc
Confidence 21111 11111 1111 679999988776653
No 203
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.82 E-value=2.6e-06 Score=85.14 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=157.0
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
+.+....|+|||..+|. +....+|+++++.+... -.+.-+ .+.+-.+.|.+||..|+...
T Consensus 48 geI~~~~F~P~gs~~aS---------gG~Dr~I~LWnv~gdceN~~~lkgH-----sgAVM~l~~~~d~s~i~S~g---- 109 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS---------GGSDRAIVLWNVYGDCENFWVLKGH-----SGAVMELHGMRDGSHILSCG---- 109 (338)
T ss_pred ceEEEEEECCCCCeEee---------cCCcceEEEEeccccccceeeeccc-----cceeEeeeeccCCCEEEEec----
Confidence 47888999999998877 34467888888766433 222211 22267899999999999771
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC-ccccccccCCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDE 343 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~-~~~~~~~~SpDG 343 (954)
....++.+|. +|+. ++.... ..+..+..+.=|
T Consensus 110 ---------------------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 110 ---------------------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ---------------------------------------------CCceEEEEecccceeeehhccccceeeecCccccC
Confidence 1245778888 8854 334333 455566666667
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~ 423 (954)
-.++.+..+ ++++.|||+..++.......+ ....++.|..++..+.-.
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~k-------------yqltAv~f~d~s~qv~sg------- 192 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENK-------------YQLTAVGFKDTSDQVISG------- 192 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccc-------------eeEEEEEecccccceeec-------
Confidence 677666533 348999999865533222100 112356677766654332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
.-.+.|-+|++ ..+.-...+..+...+.+++.||+|..+...+.+.. .++|.+..-........++....
T Consensus 193 ------gIdn~ikvWd~--r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t--vrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 193 ------GIDNDIKVWDL--RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT--VRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ------cccCceeeecc--ccCcceEEeecccCceeeEEeccCCCccccccccce--EEEEEecccCCCCceEEEeecch
Confidence 23456777874 344444555666677889999999999998877765 66777666554222244554432
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEe
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 568 (954)
....- .--..+|||+++.+.+... ..++|+||..+....-.+
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags~---------------------dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGSA---------------------DRFVYVWDTTSRRILYKL 304 (338)
T ss_pred hhhhh--hcceeeccCCCCccccccc---------------------cceEEEeecccccEEEEc
Confidence 22110 0011579999999988763 235999998765544333
No 204
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.81 E-value=1.1e-08 Score=119.43 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=91.1
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC-C-cEEEEcCCC-CCCCCC
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-G-FAILGGPTT-PIIGEG 727 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G-~~V~~~~~~-~~~G~G 727 (954)
-+...+|.|....+.+ ++|+||++|||+|..+... .+ ....++.+ + ++|+..+|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~g~~~--------~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKPGN--SLPVMVWIHGGGFMFGSGS--------LY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCCCC--CCCEEEEEcCCccccCCCC--------CC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 3677888897643223 4899999999976543321 11 12344544 3 899988887 666665
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCC
Q 002194 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (954)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (954)
............+.|+..|++|+.++ ...||++|.|+|+|+||.++.+++.. .+.+|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 43222223345688999999999886 24799999999999999999988876 3457999999988654
No 205
>PTZ00421 coronin; Provisional
Probab=98.81 E-value=1.4e-06 Score=99.63 Aligned_cols=169 Identities=8% Similarity=0.028 Sum_probs=97.3
Q ss_pred ccccccccCCCCc-EEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~~~~~~~~SpDGk-~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..+..+.|+|++. .|+..+. ++.|.+||++.++. ..+..+ ...+..++|+||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~-------------DgtVrIWDl~tg~~~~~l~~h-------------~~~V~sla~spd 179 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGA-------------DMVVNVWDVERGKAVEVIKCH-------------SDQITSLEWNLD 179 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeC-------------CCEEEEEECCCCeEEEEEcCC-------------CCceEEEEEECC
Confidence 6677899999975 4554442 23899999986543 333222 134578999999
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccc-ccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
|+.++.. +..+.|.+||+ .++.....+..+.. ....+.|++++..|+...........|.++|+
T Consensus 180 G~lLatg-------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 180 GSLLCTT-------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CCEEEEe-------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 9866554 34568899996 33333334433332 23457899998888765532211123444555
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
... ..+....+..... ....+.|++|++.++....+ ...|++||+..++....
T Consensus 245 r~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkg--------------------Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 245 RKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKG--------------------EGNIRCFELMNERLTFC 297 (493)
T ss_pred CCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeC--------------------CCeEEEEEeeCCceEEE
Confidence 442 1233222211111 11114688899877665421 12489999987765443
No 206
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.81 E-value=2.9e-06 Score=104.96 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=95.8
Q ss_pred eEEEEEe-CCc-eeEcCCC-ccccccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCccc
Q 002194 315 QLVLVSL-DGT-VKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (954)
Q Consensus 315 ~l~~~~~-~G~-~~~l~~~-~~~~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~ 389 (954)
.|.++|+ +++ ...+... ..+..++|+| ||..|+..+.+ +.+.+||+..+.. ..+...
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~~----- 617 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKTK----- 617 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEecC-----
Confidence 4666777 554 3444444 7788999997 78888777633 3899999985432 222211
Q ss_pred CCccccccccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeeccCC
Q 002194 390 IPIAFNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDS 467 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg 467 (954)
..+..+.|+ ++|+.++.. +..+.|++|++ ..+. ....+..+...+..+.|+ ++
T Consensus 618 ---------~~v~~v~~~~~~g~~latg-------------s~dg~I~iwD~--~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 618 ---------ANICCVQFPSESGRSLAFG-------------SADHKVYYYDL--RNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred ---------CCeEEEEEeCCCCCEEEEE-------------eCCCeEEEEEC--CCCCccceEecCCCCCEEEEEEe-CC
Confidence 123456784 567766554 34568999996 2222 223445556667788997 77
Q ss_pred ceEEEEEeccccceEEEEEcCCCC--CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 468 LALVYESWYKTRRTRTWVISPGSK--DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..|+.++.++. .+||.+..... ...+......+...+. .+.|+|+|.+|+...
T Consensus 673 ~~lvs~s~D~~--ikiWd~~~~~~~~~~~~l~~~~gh~~~i~------~v~~s~~~~~lasgs 727 (793)
T PLN00181 673 STLVSSSTDNT--LKLWDLSMSISGINETPLHSFMGHTNVKN------FVGLSVSDGYIATGS 727 (793)
T ss_pred CEEEEEECCCE--EEEEeCCCCccccCCcceEEEcCCCCCee------EEEEcCCCCEEEEEe
Confidence 77777665443 66666543211 0112222222222111 177999999887776
No 207
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.80 E-value=3.8e-09 Score=109.81 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=100.2
Q ss_pred cEEEEcCCCCCCCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEe
Q 002194 713 FAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (954)
|.|++ .+.+|.|.+.. ..........|+.+.++.+++.-.+ +++.++||||||.+++.+++++|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56777 55667777763 1333345567778888888776434 35999999999999999999999999999999
Q ss_pred ccCC--C----CCCCCC-CCcc-------------------ccc---hhh-----------------hc-----------
Q 002194 791 SGAY--N----RTLTPF-GFQN-------------------EDR---TLW-----------------EA----------- 813 (954)
Q Consensus 791 ~~~~--~----~~~~~~-~~~~-------------------~~~---~~~-----------------~~----------- 813 (954)
+++. . ...... .+.. ... ..+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8841 0 000000 0000 000 000 00
Q ss_pred ---HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 814 ---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 814 ---~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
...+...++...+.++++|+|+++|+.|..+| +.....+.+.+.. .+++++++.||..
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIPN----SQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHSTT----EEEEEETTCCSTH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCC----CEEEECCCCChHH
Confidence 00011122334556799999999999999998 7777775444332 6899999999986
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=2.5e-06 Score=94.16 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=99.3
Q ss_pred ceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhh
Q 002194 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (954)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d 297 (954)
..+|.++|.++.+........... .....++|||++++++.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~----------------------------------- 55 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVAN----------------------------------- 55 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEE-----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEc-----------------------------------
Confidence 679999998887755443332221 23567899999988761
Q ss_pred hccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 298 LLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 298 ~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
..+.|.++|+ +++ ..++..+....++++|+|||+++.+.... +++.++|.++
T Consensus 56 --------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~------------~~v~v~D~~t 109 (369)
T PF02239_consen 56 --------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEP------------GTVSVIDAET 109 (369)
T ss_dssp --------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEET------------TEEEEEETTT
T ss_pred --------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCC------------CceeEecccc
Confidence 1135778999 664 55565556667899999999998776442 3888999886
Q ss_pred ceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--e
Q 002194 376 IFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--H 452 (954)
Q Consensus 376 ~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~ 452 (954)
.+. +.+......... ...++..+.-+|++...++. ....+++|+++. ........ .
T Consensus 110 le~v~~I~~~~~~~~~------~~~Rv~aIv~s~~~~~fVv~------------lkd~~~I~vVdy---~d~~~~~~~~i 168 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDG------PESRVAAIVASPGRPEFVVN------------LKDTGEIWVVDY---SDPKNLKVTTI 168 (369)
T ss_dssp --EEEEEE--EE-TTT------S---EEEEEE-SSSSEEEEE------------ETTTTEEEEEET---TTSSCEEEEEE
T ss_pred ccceeecccccccccc------cCCCceeEEecCCCCEEEEE------------EccCCeEEEEEe---ccccccceeee
Confidence 543 444332111100 01223345667776643333 133568999985 22222222 2
Q ss_pred ecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 453 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
..........|+|||++++.+.+..+ .+-.+|+.+
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn---~i~viD~~~ 203 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSN---KIAVIDTKT 203 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGT---EEEEEETTT
T ss_pred cccccccccccCcccceeeecccccc---eeEEEeecc
Confidence 22233455789999999877654332 344444443
No 209
>PTZ00421 coronin; Provisional
Probab=98.77 E-value=7.5e-07 Score=101.78 Aligned_cols=203 Identities=18% Similarity=0.217 Sum_probs=121.0
Q ss_pred CCCCceecC-CCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCC----Cceeeeec
Q 002194 110 PLPALSFSP-QRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKL----GQEIEIQG 184 (954)
Q Consensus 110 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~----~~~~~lt~ 184 (954)
.+..++||| |++.||..+.+ +.|.+|++...+.. .....+.+
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~D---------------------------------gtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASED---------------------------------GTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCC---------------------------------CEEEEEecCCCccccccCcceEEecC
Confidence 577899999 89988888776 57899998643210 01122332
Q ss_pred CCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecC
Q 002194 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (954)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~ 264 (954)
+...+..+.|+|++..++.+.. ....|.++|+++++........... +..++|+|||+.|+...
T Consensus 124 --H~~~V~~l~f~P~~~~iLaSgs--------~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~spdG~lLatgs-- 187 (493)
T PTZ00421 124 --HTKKVGIVSFHPSAMNVLASAG--------ADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWNLDGSLLCTTS-- 187 (493)
T ss_pred --CCCcEEEEEeCcCCCCEEEEEe--------CCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEECCCCEEEEec--
Confidence 2246888999999754444332 2456777888877654433322222 67899999999888661
Q ss_pred CCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcCCC--ccccccccC
Q 002194 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP--AVYTSLDPS 340 (954)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~~~--~~~~~~~~S 340 (954)
....|.++|+ +|+. ..+... .......|+
T Consensus 188 -----------------------------------------------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 188 -----------------------------------------------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred -----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 1234667787 6643 233322 223456799
Q ss_pred CCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 341 pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
+++..|+....... ..+.+.+||+.... ........ .......+.|++|++.++.. .
T Consensus 221 ~~~~~ivt~G~s~s---------~Dr~VklWDlr~~~~p~~~~~~d-----------~~~~~~~~~~d~d~~~L~lg-g- 278 (493)
T PTZ00421 221 KRKDLIITLGCSKS---------QQRQIMLWDTRKMASPYSTVDLD-----------QSSALFIPFFDEDTNLLYIG-S- 278 (493)
T ss_pred CCCCeEEEEecCCC---------CCCeEEEEeCCCCCCceeEeccC-----------CCCceEEEEEcCCCCEEEEE-E-
Confidence 99888776542211 13489999987422 11111100 00122346799999855443 1
Q ss_pred ccCCCccccccCCCeEEEEec
Q 002194 420 QDGGDAKVEVTPRDIIYTQQA 440 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~ 440 (954)
.+.+.|.+|++
T Consensus 279 ----------kgDg~Iriwdl 289 (493)
T PTZ00421 279 ----------KGEGNIRCFEL 289 (493)
T ss_pred ----------eCCCeEEEEEe
Confidence 12457888886
No 210
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.77 E-value=5.9e-07 Score=81.21 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=98.4
Q ss_pred HHHHHHHHCCcEEEE--cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 703 TSVLLWLARGFAILG--GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 703 ~~~~~la~~G~~V~~--~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
..+..|+.+|+.|.. .+|+-.+-+|++..+. --.......+.++..|.+. .+..++++.|+||||-++.+++..-
T Consensus 34 ~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~-~~~t~~~~~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade~ 110 (213)
T COG3571 34 AVAAALARRGWLVARFEFPYMAARRTGRRKPPP-GSGTLNPEYIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADEL 110 (213)
T ss_pred HHHHHHHhCceeEEEeecchhhhccccCCCCcC-ccccCCHHHHHHHHHHHhc--ccCCceeeccccccchHHHHHHHhh
Confidence 456778999999998 3333333344322211 1112222234445555554 3456899999999999999988654
Q ss_pred CCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002194 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (954)
Q Consensus 781 p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~ 860 (954)
.-.+.+++|..-.+. +.+.++. --..++..+++|+||.||+.|.+-. .++. ... .
T Consensus 111 ~A~i~~L~clgYPfh----ppGKPe~--------------~Rt~HL~gl~tPtli~qGtrD~fGt--r~~V---a~y--~ 165 (213)
T COG3571 111 QAPIDGLVCLGYPFH----PPGKPEQ--------------LRTEHLTGLKTPTLITQGTRDEFGT--RDEV---AGY--A 165 (213)
T ss_pred cCCcceEEEecCccC----CCCCccc--------------chhhhccCCCCCeEEeecccccccC--HHHH---Hhh--h
Confidence 334777777653221 1111111 1124566789999999999998754 3333 111 2
Q ss_pred CCCcEEEEEeCCCCCcCCCcc---------cHHHHHHHHHHHHHH
Q 002194 861 HGALCRLVILPFESHGYAARE---------SIMHVLWETDRWLQK 896 (954)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~---------~~~~~~~~i~~fl~~ 896 (954)
...++++++++++.|.+.... ......+++..|+.+
T Consensus 166 ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 166 LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 245799999999999874222 122344566667654
No 211
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.76 E-value=4.4e-06 Score=89.32 Aligned_cols=336 Identities=12% Similarity=0.061 Sum_probs=185.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
++...++||-|++|++.-.. +|.+|.-+ ... .|..+.. .
T Consensus 34 p~~~~~~SP~G~~l~~~~~~----------------------------------~V~~~~g~----~~~--~l~~~~~-~ 72 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA----------------------------------GVECWGGP----SKA--KLVRFRH-P 72 (561)
T ss_pred chhheeecCcchheehhhcc----------------------------------ceEEcccc----chh--heeeeec-C
Confidence 56688999999999876553 56665432 122 3332322 3
Q ss_pred cccceeecCCCCeEEEEEeecc------ccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDA------EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~------~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
.+....|||.|++|..=.+.+- ...-....+++++|..+|....-........ -....+.||-|.++++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh--
Confidence 6888899999998877554331 1111223378899988876643322211100 001246788777766644
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCC----Ccccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----PAVYTSLDP 339 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~----~~~~~~~~~ 339 (954)
-...|+++.+++...+..- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 1234667776443222211 256788999
Q ss_pred CCCC--cEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 340 SPDE--KYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 340 SpDG--k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
||-| .-|+|-.-.. .+.+..+.+|.+-- +..+..+-.. ...-.+.|.+.|+.+.+.
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk-------------~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFK-------------VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEe-------------ecccEEEEecCCceEEEE
Confidence 9975 3455544221 12244667776652 2222222111 111358899999999887
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
+.+.-.... .. -+...||++++ +....+........+..+.|.|+++.++..+.... ..+-..++.+.
T Consensus 241 ~~t~~ksnK-sy-fgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p--a~~s~~~lr~N----- 308 (561)
T COG5354 241 VMTHTKSNK-SY-FGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP--ASVSVFDLRGN----- 308 (561)
T ss_pred EEEeeeccc-ce-eccceEEEEee---cccccceeccccccceeeeecccCCceeEEecccc--cceeecccccc-----
Confidence 554321111 00 12357899986 44333333344667788999999999887765443 34555666552
Q ss_pred EEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCccccc
Q 002194 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (954)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 576 (954)
+.+-.+.+. ...+.|||.++++++..-+. -...+-.||..+ +...+..-.+-
T Consensus 309 l~~~~Pe~~------rNT~~fsp~~r~il~agF~n------------------l~gni~i~~~~~-rf~~~~~~~~~--- 360 (561)
T COG5354 309 LRFYFPEQK------RNTIFFSPHERYILFAGFDN------------------LQGNIEIFDPAG-RFKVAGAFNGL--- 360 (561)
T ss_pred eEEecCCcc------cccccccCcccEEEEecCCc------------------cccceEEeccCC-ceEEEEEeecC---
Confidence 111111111 11166999999998865221 122366777753 33434332221
Q ss_pred ceeEEeccCCccccccccCCEEEEEEecCC
Q 002194 577 ETTVALMSDQTEGDLYLNQLKILTSKESKT 606 (954)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~ 606 (954)
-.. -..||||+..+.....++.
T Consensus 361 --n~s------~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 361 --NTS------YCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred --Cce------EeeccCCceEEEecCCCcc
Confidence 011 1469999988776666554
No 212
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.74 E-value=4.4e-07 Score=89.08 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC---CCCC---ccccchhhhcHHHHHhcCccccc-CCCC
Q 002194 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF---QNEDRTLWEATSTYVEMSPFMSA-NKLK 830 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~sp~~~~-~~~~ 830 (954)
++.+.|+|.|+||+.|.+++.+++ +++ |+++|.+..... ..+. .......+-....+.....+... ..-.
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~ 134 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNP 134 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCC
Confidence 345999999999999999998883 555 888887652110 0000 00000001011112221111111 1224
Q ss_pred CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 831 ~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.++|+++++.|++++ +..+...+. . +..++.+|.+|.+.. ..+.+..|.+|+
T Consensus 135 ~~~lvll~~~DEvLd--~~~a~~~~~---~----~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLD--YREAVAKYR---G----CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred ccEEEEEecCCcccC--HHHHHHHhc---C----ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 589999999999998 755544443 2 244466888999864 456678888886
No 213
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.74 E-value=2.8e-07 Score=92.73 Aligned_cols=192 Identities=19% Similarity=0.168 Sum_probs=117.5
Q ss_pred CCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC-------------CCc---
Q 002194 666 KDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------------GDE--- 729 (954)
Q Consensus 666 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~-------------G~~--- 729 (954)
|.+++|+||+.||-. +++..+..+...+|++||+|.+...+|.... +..
T Consensus 114 k~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~ 178 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWI 178 (399)
T ss_pred CCCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccce
Confidence 345699999999931 2344455677789999999999777765431 000
Q ss_pred -----ccc-------hhhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEeeChHHHHHHHH
Q 002194 730 -----EAN-------DRFVEQLVACAEAAVEEVVRR---------------------GVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 730 -----~~~-------~~~~~~~~~D~~~av~~l~~~---------------------~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
..+ ..-...-..++..|++-|++. +.+|.++++|+|||+||..++..
T Consensus 179 ~ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ 258 (399)
T KOG3847|consen 179 KIRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIAS 258 (399)
T ss_pred EeeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhh
Confidence 000 111223356666666666542 23677899999999999999998
Q ss_pred HHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 777 a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
.+.+ ..|+|+|+..+. +.+.. . ....+++.|+|+|.-+ |..- .+....-+
T Consensus 259 ss~~-t~FrcaI~lD~W----M~Pl~-----~---------------~~~~~arqP~~finv~-~fQ~----~en~~vmK 308 (399)
T KOG3847|consen 259 SSSH-TDFRCAIALDAW----MFPLD-----Q---------------LQYSQARQPTLFINVE-DFQW----NENLLVMK 308 (399)
T ss_pred hccc-cceeeeeeeeee----ecccc-----h---------------hhhhhccCCeEEEEcc-cccc----hhHHHHHH
Confidence 8877 679999988762 11110 0 1223457899999833 4332 22333334
Q ss_pred HHHhCCCcEEEEEeCCCCCcCC-C---------------------cccHHHHHHHHHHHHHHhcccCC
Q 002194 857 ALKGHGALCRLVILPFESHGYA-A---------------------RESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~-~---------------------~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
+....+..-.+..+.|+-|.-. . .+..+...+..++||++|+....
T Consensus 309 ki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~~q 376 (399)
T KOG3847|consen 309 KIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDLVQ 376 (399)
T ss_pred hhhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4444444456777888877421 0 11123345668999999986543
No 214
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.74 E-value=2.8e-06 Score=83.42 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=162.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcc---------ccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLE---------ELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
+...+.+.-+|..|-..+.+..+.+| .+.++...+..+.++.+.......+.+..+.|||++. |+
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t----Gk-- 85 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET----GK-- 85 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC----Cc--
Confidence 56677888889888777777555555 3344555566777787777666677778899999965 43
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC-------CCce-eecccCCCccccccccceeEe
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-------TGKA-RPLFQSPDIYLNAIFDNFVWV 252 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~-------~g~~-~~lt~~~~~~~~~~~~~~~ws 252 (954)
+|.....+..+...-||++|..++++.+.- . .....|.+.++. +.++ .++.. ++.. +....|+
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~--m--g~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~sk----it~a~Wg 156 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQ--M--GYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSK----ITSALWG 156 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhh--c--CcceEEEEEEccCChhhhcccCceEEecC-Cccc----eeeeeec
Confidence 344444556788889999999999987522 1 234455555554 3332 23322 2222 5678899
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCC
Q 002194 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGP 330 (954)
Q Consensus 253 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~ 330 (954)
|-|+.|++.. ..+.|-.+|+ +|. ...-..
T Consensus 157 ~l~~~ii~Gh-------------------------------------------------e~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 157 PLGETIIAGH-------------------------------------------------EDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred ccCCEEEEec-------------------------------------------------CCCcEEEEEcccCceeeechh
Confidence 9999998651 1234667788 763 222222
Q ss_pred -C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EE-eccCCCcccCCccccccccCccceee
Q 002194 331 -P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RE-LCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 331 -~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~-l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
. ..+.++.+|||..+.+..+.+. +-.+||..+-++ +. .+..| ++..++
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~P---------------vN~aai 239 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERP---------------VNTAAI 239 (327)
T ss_pred hhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeeccc---------------ccceec
Confidence 2 6788999999999988887443 566788775433 22 22222 234566
Q ss_pred ccCCCCceEEEEeccCCCcccccc---CCC---eEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 407 RSDKPSTLYWAETQDGGDAKVEVT---PRD---IIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~---~~~---~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+|--..++.- ||+...++. .+. ....+++ .--.+..++..+-+.+++++|+|||+.-... .++ +.
T Consensus 240 sP~~d~Vilg-----GGqeA~dVTTT~~r~GKFEArFyh~--i~eEEigrvkGHFGPINsvAfhPdGksYsSG-GED-G~ 310 (327)
T KOG0643|consen 240 SPLLDHVILG-----GGQEAMDVTTTSTRAGKFEARFYHL--IFEEEIGRVKGHFGPINSVAFHPDGKSYSSG-GED-GY 310 (327)
T ss_pred ccccceEEec-----CCceeeeeeeecccccchhhhHHHH--HHHHHhccccccccCcceeEECCCCcccccC-CCC-ce
Confidence 7755444432 111100000 000 0000000 0011233455667788999999999954333 233 34
Q ss_pred eEEEEEcC
Q 002194 481 TRTWVISP 488 (954)
Q Consensus 481 ~~l~~~d~ 488 (954)
.+|..++.
T Consensus 311 VR~h~Fd~ 318 (327)
T KOG0643|consen 311 VRLHHFDS 318 (327)
T ss_pred EEEEEecc
Confidence 67776654
No 215
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.73 E-value=4.5e-07 Score=95.97 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=146.6
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee---ecccCCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPD 239 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~ 239 (954)
+-|.||++...|.-.+..+|-.++.+..+.....+|||+.|+. +.+...|-+||+..-..+ +||...-
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv---------GGeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV---------GGEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe---------ccccceeeeeeccCCCcchhhhcCCcch
Confidence 4689999976543333445555555568899999999999998 445677777787654443 2332221
Q ss_pred ccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 240 IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 240 ~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
. -..++.|||.+..|... ..+.|.++
T Consensus 511 a-----CyALa~spDakvcFscc-------------------------------------------------sdGnI~vw 536 (705)
T KOG0639|consen 511 A-----CYALAISPDAKVCFSCC-------------------------------------------------SDGNIAVW 536 (705)
T ss_pred h-----hhhhhcCCccceeeeec-------------------------------------------------cCCcEEEE
Confidence 1 23678899998766541 22457778
Q ss_pred Ee-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002194 320 SL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 320 ~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (954)
|+ +. .++++... .+...+.+|+||..|..... ++.+.-||+..+. ++..+...
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlregr--qlqqhdF~--------- 592 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREGR--QLQQHDFS--------- 592 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhhh--hhhhhhhh---------
Confidence 88 55 35555554 77888999999999876653 3478889987432 22222211
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
..+.++...|.|..+++- -....+++... .+.+..+|..++.-+-++.|++-|++++....+
T Consensus 593 --SQIfSLg~cP~~dWlavG-------------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 593 --SQIFSLGYCPTGDWLAVG-------------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred --hhheecccCCCccceeee-------------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCch
Confidence 123456788999988886 23457778774 666677888888888999999999998877554
Q ss_pred cccceEEEEEcCC
Q 002194 477 KTRRTRTWVISPG 489 (954)
Q Consensus 477 ~~~~~~l~~~d~~ 489 (954)
+- ...|+..-.
T Consensus 655 nl--LnawrtPyG 665 (705)
T KOG0639|consen 655 NL--LNAWRTPYG 665 (705)
T ss_pred hh--hhhccCccc
Confidence 42 445665543
No 216
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.72 E-value=5.8e-07 Score=94.41 Aligned_cols=213 Identities=15% Similarity=0.098 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE--cCCCCCCCCCCc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG--GPTTPIIGEGDE 729 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~--~~~~~~~G~G~~ 729 (954)
.+..+++|+..+... .|++|++.|.. .+.|.......+.-|+++|++.+. .+| ||.+
T Consensus 77 a~~~~~~P~~~~~~~---rp~~IhLagTG-------------Dh~f~rR~~l~a~pLl~~gi~s~~le~Py-----yg~R 135 (348)
T PF09752_consen 77 ARFQLLLPKRWDSPY---RPVCIHLAGTG-------------DHGFWRRRRLMARPLLKEGIASLILENPY-----YGQR 135 (348)
T ss_pred eEEEEEECCccccCC---CceEEEecCCC-------------ccchhhhhhhhhhHHHHcCcceEEEeccc-----cccc
Confidence 445566787752222 68898988831 123332233346678888998877 444 3333
Q ss_pred ccc----------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCC
Q 002194 730 EAN----------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (954)
Q Consensus 730 ~~~----------~~---~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~ 796 (954)
... .+ .+...+.+....+.|+.++++. ++++.|.||||.||..+++..|..+..+-+.++.+..
T Consensus 136 kP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs 212 (348)
T PF09752_consen 136 KPKDQRRSSLRNVSDLFVMGRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSAS 212 (348)
T ss_pred ChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCC
Confidence 111 11 1345688889999999999653 8999999999999999999998876666666543221
Q ss_pred -CC--------CCCCCcccc-------------------------chhhhcHHHH----HhcCcccccCCCCC-----CE
Q 002194 797 -TL--------TPFGFQNED-------------------------RTLWEATSTY----VEMSPFMSANKLKK-----PI 833 (954)
Q Consensus 797 -~~--------~~~~~~~~~-------------------------~~~~~~~~~~----~~~sp~~~~~~~~~-----P~ 833 (954)
.+ ..|..-... ...+.+.+.. ..++-..++.+..+ .+
T Consensus 213 ~vFt~Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~i 292 (348)
T PF09752_consen 213 VVFTEGVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAI 292 (348)
T ss_pred cchhhhhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcE
Confidence 00 111000000 0000001111 11122233444433 48
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
.++.+++|..|| ..+...+.+... | +++..+++ ||.-........+.+.|.+=|+
T Consensus 293 i~V~A~~DaYVP--r~~v~~Lq~~WP--G--sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 293 IFVAAKNDAYVP--RHGVLSLQEIWP--G--SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred EEEEecCceEec--hhhcchHHHhCC--C--CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 889999999998 666655544443 3 46666887 9975433344455555665443
No 217
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.71 E-value=1e-07 Score=98.56 Aligned_cols=268 Identities=9% Similarity=0.095 Sum_probs=158.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+..+.|.|+|++|+..+.. +..-+|+... ..-+.-+. .+..
T Consensus 98 ~V~~v~WtPeGRRLltgs~S---------------------------------GEFtLWNg~~---fnFEtilQ--aHDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS---------------------------------GEFTLWNGTS---FNFETILQ--AHDS 139 (464)
T ss_pred ceeeEEEcCCCceeEeeccc---------------------------------ccEEEecCce---eeHHHHhh--hhcc
Confidence 35678999999999987764 3556776421 01111121 1334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....||+||.+++- ++...-|-.+++.-....-+-...... +..++|||....++..+
T Consensus 140 ~Vr~m~ws~~g~wmiS---------gD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~S------- 199 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS---------GDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCS------- 199 (464)
T ss_pred cceeEEEccCCCEEEE---------cCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEec-------
Confidence 7889999999999887 333444444454333322222222122 77899998766555441
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
..+.|-++|. ..+.+.|... ..+.+++|.|.-..|
T Consensus 200 ------------------------------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 200 ------------------------------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ------------------------------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1123445554 3455666655 677899999976666
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
+..+.+ +-|.+||..++. +-.+..+. .-+..+.|+|+|..|+-.
T Consensus 238 asgskD-------------nlVKlWDprSg~cl~tlh~HK-------------ntVl~~~f~~n~N~Llt~--------- 282 (464)
T KOG0284|consen 238 ASGSKD-------------NLVKLWDPRSGSCLATLHGHK-------------NTVLAVKFNPNGNWLLTG--------- 282 (464)
T ss_pred EEccCC-------------ceeEeecCCCcchhhhhhhcc-------------ceEEEEEEcCCCCeeEEc---------
Confidence 655533 268899988543 23333222 234568899999765554
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCC
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~ 505 (954)
+....+-++|+ ..=.+......+.-++..+.|+|=...|+.+...++. ...|.+++... ...+...+...
T Consensus 283 ----skD~~~kv~Di--R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p---~~~i~~AHd~~ 352 (464)
T KOG0284|consen 283 ----SKDQSCKVFDI--RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEP---LGEIPPAHDGE 352 (464)
T ss_pred ----cCCceEEEEeh--hHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccccc---ccCCCcccccc
Confidence 33446777875 1123334445566778899999988888777655542 55666664332 12223333334
Q ss_pred ccCCCCCCCeeeccCCcEEEEEE
Q 002194 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 506 ~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.+ ++|.|=|..|+-..
T Consensus 353 iws------l~~hPlGhil~tgs 369 (464)
T KOG0284|consen 353 IWS------LAYHPLGHILATGS 369 (464)
T ss_pred eee------eeccccceeEeecC
Confidence 444 78889888776644
No 218
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.2e-06 Score=86.14 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=118.5
Q ss_pred cccceeecCC-CCeEEEEEeeccccCCCCceEEEEEECCCCc---eeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.+-..+|+|- |..||... +...|.+++..++. .+.++. + ..+..+.+++|+|.|+.|+.+
T Consensus 16 r~W~~awhp~~g~ilAscg---------~Dk~vriw~~~~~~s~~ck~vld--~-~hkrsVRsvAwsp~g~~La~a---- 79 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG---------TDKAVRIWSTSSGDSWTCKTVLD--D-GHKRSVRSVAWSPHGRYLASA---- 79 (312)
T ss_pred cEEEEEeccCCceEEEeec---------CCceEEEEecCCCCcEEEEEecc--c-cchheeeeeeecCCCcEEEEe----
Confidence 5778999997 66555433 34566666665322 222222 1 223348899999999999876
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc---eeEcCCC-ccccccccCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT---VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~---~~~l~~~-~~~~~~~~Sp 341 (954)
+-+ .+.-||.-. +++ ...|..+ ..+..++||+
T Consensus 80 -----------------SFD--------------------------~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~ 115 (312)
T KOG0645|consen 80 -----------------SFD--------------------------ATVVIWKKE-DGEFECVATLEGHENEVKCVAWSA 115 (312)
T ss_pred -----------------ecc--------------------------ceEEEeecC-CCceeEEeeeeccccceeEEEEcC
Confidence 111 222222211 332 2222233 5677899999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~ 420 (954)
+|++||..+.++ .+|+|.++. .+..-+.-+. .+...+-.+.|.|.-..|+-.
T Consensus 116 sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL~----------~HtqDVK~V~WHPt~dlL~S~---- 168 (312)
T KOG0645|consen 116 SGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVLQ----------EHTQDVKHVIWHPTEDLLFSC---- 168 (312)
T ss_pred CCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeeec----------cccccccEEEEcCCcceeEEe----
Confidence 999999988554 799999884 3333222211 122345678899965533322
Q ss_pred cCCCccccccCCCeEEEEecCCCCCCC---ceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 421 DGGDAKVEVTPRDIIYTQQAEPVQGEG---PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~g~~---~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
+..+.|-+|.-+ .++. ...|......+..++|.+.|.+|+..+++.+ .+||+
T Consensus 169 ---------SYDnTIk~~~~~--~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t--v~Iw~ 223 (312)
T KOG0645|consen 169 ---------SYDNTIKVYRDE--DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT--VSIWR 223 (312)
T ss_pred ---------ccCCeEEEEeec--CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc--eEeee
Confidence 334556666531 1222 3445555557788999999999999877765 77888
No 219
>PTZ00420 coronin; Provisional
Probab=98.70 E-value=7.8e-06 Score=94.06 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=72.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|+|++..++.+... ++.+.+||+.+++. ..+.. . ..+.+++|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~~-~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQINM-P-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEec-C-------------CcEEEEEECCCC
Confidence 667889999999987655422 23899999986543 22221 1 234689999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc-----eeeccCCceEEEEEeccccceEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-----ISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~-----~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
+.++.. .....|.+||+ .++.....+..+.+.... ..|++|+.+|+..+..+.....|.+
T Consensus 180 ~lLat~-------------s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 180 NLLSGT-------------CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CEEEEE-------------ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 966544 23457899996 333333444444433221 2356899998887655432223444
Q ss_pred EcCCC
Q 002194 486 ISPGS 490 (954)
Q Consensus 486 ~d~~~ 490 (954)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 55543
No 220
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=4e-06 Score=90.24 Aligned_cols=305 Identities=13% Similarity=0.172 Sum_probs=158.1
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeec
Q 002194 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (954)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~ 184 (954)
-+.-|.+..+.|||..++|+.-+.. ....++..+.. ..|.|||+.+ |.......+
T Consensus 246 RF~Hp~Vq~idfSP~EkYLVT~s~~----------------p~~~~~~d~e~------~~l~IWDI~t-G~lkrsF~~-- 300 (698)
T KOG2314|consen 246 RFYHPGVQFIDFSPNEKYLVTYSPE----------------PIIVEEDDNEG------QQLIIWDIAT-GLLKRSFPV-- 300 (698)
T ss_pred hccCCCceeeecCCccceEEEecCC----------------ccccCcccCCC------ceEEEEEccc-cchhcceec--
Confidence 3445678899999999999876652 11112222222 3799999975 322222111
Q ss_pred CCCCCc--ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 185 FPDGAK--LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 185 ~~~~~~--~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
. .+.. -....||-|+|++|=.. ...|-+++...-.. + ......+. ++..+.|||-+.+|+|.+
T Consensus 301 ~-~~~~~~WP~frWS~DdKy~Arm~----------~~sisIyEtpsf~l--l-d~Kslki~-gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 301 I-KSPYLKWPIFRWSHDDKYFARMT----------GNSISIYETPSFML--L-DKKSLKIS-GIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred c-CCCccccceEEeccCCceeEEec----------cceEEEEecCceee--e-cccccCCc-cccCcccCCCcceEEEEc
Confidence 1 1222 23458999999887654 24555555433111 1 11110000 167899999999999984
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCCc--ccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA--VYTSLDP 339 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~~--~~~~~~~ 339 (954)
+.....+ .++-++.+ ++..-+..+-- ..--+-|
T Consensus 366 pe~~~~p--------------------------------------------arvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 366 PETNNIP--------------------------------------------ARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred ccccCCc--------------------------------------------ceEEEEecCccceeeeccceeeeccEEEe
Confidence 4322220 11223333 33211111111 1123568
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
-..|.+|.+..++..-.. ....-.++.|+.++.+.+ |.-......-+-.++|-|.|.+.+.....
T Consensus 402 Qk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI------------pve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI------------PVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC------------CceeeecchheeeeeeccCCCeEEEEEcc
Confidence 889999999776543110 000111455555443221 11000111223468899999998877211
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
. ....-..|-+.. ++..++.+.. .....+.+.|||.|+.+|.++-.. ++..|+.+|++-.+. +.
T Consensus 467 ~--------~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a~~--k~- 531 (698)
T KOG2314|consen 467 T--------VKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYADL--KD- 531 (698)
T ss_pred c--------cccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecchhhh--hh-
Confidence 1 011223444442 3444443322 224467899999999999876543 346788888774111 11
Q ss_pred ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 499 FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+..+... ....+.|.|.|++++..+
T Consensus 532 ~~~~eh~-----~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 532 TASPEHF-----AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred ccCcccc-----ccccceECCCCCEEEEee
Confidence 1111100 111167999999998876
No 221
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.7e-06 Score=93.92 Aligned_cols=278 Identities=11% Similarity=0.095 Sum_probs=167.6
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
..+.+...||. ...||..- ...||+++..+++..+|....... +.++.|+++|+.|++..
T Consensus 177 DfY~nlldWss-~n~laVal----------g~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~----- 236 (484)
T KOG0305|consen 177 DFYLNLLDWSS-ANVLAVAL----------GQSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGT----- 236 (484)
T ss_pred cHhhhHhhccc-CCeEEEEe----------cceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEee-----
Confidence 33667778995 34566543 578999999999999998775332 78999999999999761
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCC-C-ccccccccCCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP-P-AVYTSLDPSPDE 343 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~-~-~~~~~~~~SpDG 343 (954)
..+.+.++|. ...++.+.. . ..+...+|. +
T Consensus 237 --------------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 237 --------------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S 270 (484)
T ss_pred --------------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence 1234556666 334555555 3 777888898 3
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
..+...+ . ...|..+|+...+. .. + ..++...+-.+.|++|++.++--
T Consensus 271 ~~lssGs-r------------~~~I~~~dvR~~~~~~~-~-----------~~~H~qeVCgLkws~d~~~lASG------ 319 (484)
T KOG0305|consen 271 SVLSSGS-R------------DGKILNHDVRISQHVVS-T-----------LQGHRQEVCGLKWSPDGNQLASG------ 319 (484)
T ss_pred ceEEEec-C------------CCcEEEEEEecchhhhh-h-----------hhcccceeeeeEECCCCCeeccC------
Confidence 3333333 2 22677777763221 11 0 11233455679999999976543
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 502 (954)
+..+.+++||. ........++.+...+..++|+|=-+-|+........ ..|...+..++ ......+..
T Consensus 320 -------gnDN~~~Iwd~--~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g--~~i~~vdtg 387 (484)
T KOG0305|consen 320 -------GNDNVVFIWDG--LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTG--ARIDSVDTG 387 (484)
T ss_pred -------CCccceEeccC--CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCC--cEecccccC
Confidence 44668899985 3444556778889999999999987766665432221 34555565554 222212211
Q ss_pred CCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE-eccCcccccceeEE
Q 002194 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI-WESDKEKYYETTVA 581 (954)
Q Consensus 503 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~~~ 581 (954)
. -+-+ +.||+..+-++...-. + ...|-+|+..+-+.... ...... +.
T Consensus 388 s-QVcs------L~Wsk~~kEi~sthG~-------------s------~n~i~lw~~ps~~~~~~l~gH~~R-----Vl- 435 (484)
T KOG0305|consen 388 S-QVCS------LIWSKKYKELLSTHGY-------------S------ENQITLWKYPSMKLVAELLGHTSR-----VL- 435 (484)
T ss_pred C-ceee------EEEcCCCCEEEEecCC-------------C------CCcEEEEeccccceeeeecCCcce-----eE-
Confidence 1 1222 8899999888877611 1 12466676655433222 222211 22
Q ss_pred eccCCccccccccCCEEEEEEecCCCCceEEEEEC
Q 002194 582 LMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSW 616 (954)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~ 616 (954)
..++||||.+++......+ +.+|++
T Consensus 436 ------~la~SPdg~~i~t~a~DET----lrfw~~ 460 (484)
T KOG0305|consen 436 ------YLALSPDGETIVTGAADET----LRFWNL 460 (484)
T ss_pred ------EEEECCCCCEEEEecccCc----EEeccc
Confidence 2578999987775444333 555554
No 222
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.3e-07 Score=94.43 Aligned_cols=257 Identities=11% Similarity=0.130 Sum_probs=153.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccce-----------------eeeeeecCCCCCCcceeeEeceEEEEccCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEK-----------------LAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 173 (954)
+-...|||||++|+..+-++...+|.+....++ +--+.++.+......++-++.|.+|.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 446789999999999988877777755432111 11234444444444444457899999965
Q ss_pred CCCCc-eeeee-cCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE
Q 002194 174 GKLGQ-EIEIQ-GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (954)
Q Consensus 174 g~~~~-~~~lt-~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (954)
|. .++.. .++ ..+...+||-|+.+|+-.+ -...+.+-.+.+|+.-+-..+.... +....|
T Consensus 295 ---G~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~s---------fD~tvRiHGlKSGK~LKEfrGHsSy----vn~a~f 356 (508)
T KOG0275|consen 295 ---GQCLRRFDRAHT--KGVTCLSFSRDNSQILSAS---------FDQTVRIHGLKSGKCLKEFRGHSSY----VNEATF 356 (508)
T ss_pred ---chHHHHhhhhhc--cCeeEEEEccCcchhhccc---------ccceEEEeccccchhHHHhcCcccc----ccceEE
Confidence 43 22221 122 3588999999999999854 2455666667777765444444333 668899
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc----ee
Q 002194 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VK 326 (954)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~----~~ 326 (954)
++||..|..+ +.+ ++ +-+++. +++ -+
T Consensus 357 t~dG~~iisa---------------------SsD--------------------------gt--vkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 357 TDDGHHIISA---------------------SSD--------------------------GT--VKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCCCeEEEe---------------------cCC--------------------------cc--EEEecCcchhhhhhcc
Confidence 9999999876 222 11 223333 332 12
Q ss_pred EcCCCccccccccCCCC-cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002194 327 EIGPPAVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (954)
Q Consensus 327 ~l~~~~~~~~~~~SpDG-k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 405 (954)
.+.....+.++-.-|.. ..+++.. + .+.+++.++.|..++..+....... .--...
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCN-r------------sntv~imn~qGQvVrsfsSGkREgG----------dFi~~~ 444 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCN-R------------SNTVYIMNMQGQVVRSFSSGKREGG----------DFINAI 444 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEc-C------------CCeEEEEeccceEEeeeccCCccCC----------ceEEEE
Confidence 22222333344444432 2333322 2 2389999999988888776543211 112356
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEE
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (954)
.||.|..|+.. .....+|-+.. ..|+-.+.+.-++.++-+++-.|-...|+.-
T Consensus 445 lSpkGewiYci-------------gED~vlYCF~~--~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 445 LSPKGEWIYCI-------------GEDGVLYCFSV--LSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred ecCCCcEEEEE-------------ccCcEEEEEEe--ecCceeeeeecccccccccccCcccchhhhh
Confidence 89999987776 44567888775 4555556666667777777777765555443
No 223
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.5e-06 Score=99.01 Aligned_cols=257 Identities=14% Similarity=0.129 Sum_probs=154.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeee--------eecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGL--------RIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
....+.|.|||++|..+..++....+.-..++.+...+ .+.-..+.....+....+.++.... + ....-
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps-~--~~~~i 91 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS-G--EEDTI 91 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC-C--Cccce
Confidence 45678999999999988877555544333332221111 1111222222223335677777643 2 12224
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
|+.++ ..+...+++-||++||+.+ ....|-+++.+.+.....+...... +..+.+.|.|.+|+++
T Consensus 92 L~Rft--lp~r~~~v~g~g~~iaags---------dD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 92 LARFT--LPIRDLAVSGSGKMIAAGS---------DDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVS 156 (933)
T ss_pred eeeee--ccceEEEEecCCcEEEeec---------CceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEE
Confidence 55444 3578899999999999954 4778888888776555555444332 6788999999999987
Q ss_pred ecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcC---CC-----
Q 002194 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG---PP----- 331 (954)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~---~~----- 331 (954)
. ..+.++.+++ +|... .++ ..
T Consensus 157 s-------------------------------------------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 157 S-------------------------------------------------CDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred e-------------------------------------------------cCceEEEEEcccchhhhhcccCCccccccc
Confidence 2 2345667777 66322 121 11
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|+|||..+++...++ .|.+|+.++.+..-...... .......++|||.|
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~~----------~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDKL----------SSSKFSDLQWSPNG 244 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCC-------------eEEEEccCCceeheeecccc----------cccceEEEEEcCCC
Confidence 2345789999977776665333 78888888755322111110 11224568999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
++|+.. .-.++|.+|+. ++ ..+ ......+-..+|-|+...|-+..+
T Consensus 245 ~YiAAs-------------~~~g~I~vWnv---~t--~~~-~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 245 KYIAAS-------------TLDGQILVWNV---DT--HER-HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred cEEeee-------------ccCCcEEEEec---cc--chh-ccccceeEEEecCCCCCeeEEEee
Confidence 988776 44668889986 32 111 223334556778888777766554
No 224
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.9e-06 Score=83.56 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=105.9
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+++++|||.|++|+..+ |+..+-||.-.+++.+-+...++. ...+-.++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aS-------------FD~t~~Iw~k~~~efecv~~lEGH----------EnEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASAS-------------FDATVVIWKKEDGEFECVATLEGH----------ENEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEee-------------ccceEEEeecCCCceeEEeeeecc----------ccceeEEEEcCCCC
Confidence 5678999999999999988 445788888777777766665533 24566799999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
.|+-- +....+|+|.+ .++++. ..|..+..++..+.|.|-...|+..+.+++ .++|.-+.
T Consensus 119 ~LATC-------------SRDKSVWiWe~--deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT--Ik~~~~~~ 181 (312)
T KOG0645|consen 119 YLATC-------------SRDKSVWIWEI--DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT--IKVYRDED 181 (312)
T ss_pred EEEEe-------------eCCCeEEEEEe--cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe--EEEEeecC
Confidence 77665 33457899986 244443 455778889999999997766666555544 77887765
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+++-+..+..+.....+.+ +.|.+.|..|+...
T Consensus 182 -dddW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 -DDDWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred -CCCeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 3223444445555545555 78899998887776
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=7.3e-07 Score=91.01 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=75.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....|.+||..++-.+- +...|.++|+++|...+|.....++ +..+.|||||.+|+.++.+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~--------gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfaAt~d---- 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF--------GSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFAATCD---- 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc--------CcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEEeccc----
Confidence 37888999999998887543 4678888899999888887444333 7789999999999977211
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC-CceeEcCCCccccccccCCCCcEEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~-G~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
+.-.||..+-. -..+.+...+.+....|||+|++|+
T Consensus 260 -------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 260 -------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred -------------------------------------------ceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 11123322211 1234444446888999999999999
Q ss_pred EEeecCC
Q 002194 348 ISSIHRP 354 (954)
Q Consensus 348 ~~s~~~~ 354 (954)
|+....+
T Consensus 297 f~~sgsp 303 (445)
T KOG2139|consen 297 FACSGSP 303 (445)
T ss_pred EEEcCCc
Confidence 9986654
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.3e-05 Score=86.99 Aligned_cols=332 Identities=12% Similarity=0.105 Sum_probs=182.0
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002194 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (954)
Q Consensus 112 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~ 191 (954)
....+|++|+..|+...+ .++|.+... +. ..++..+ ...
T Consensus 38 ~v~~~S~~G~lfA~~~~~----------------------------------~v~i~~~~~----~~-~~lt~~~--~~~ 76 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ----------------------------------VVKVFEIAT----LK-VVLCVEL--KKT 76 (566)
T ss_pred eeEEEcCCCcEEEEEcCC----------------------------------eEEEEEccC----Cc-EEEEecc--cee
Confidence 467889999999998874 678877643 22 3444333 257
Q ss_pred cceeecCCCCeEEEEEeeccc-cCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 192 NFVTWSQDGKHLAFSIRIDAE-DSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 192 ~~~~wSPDG~~iaf~~~~~~~-~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
....+||-|..|..-...... ....+..++-+++++++..+--..... .+. ..+.||+|..+.+..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~---Q~~-W~~qfs~dEsl~arl--------- 143 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM---QNG-WVPQFSIDESLAARL--------- 143 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhh---hcC-cccccccchhhhhhh---------
Confidence 788999999877653322211 222334667777777643321111110 000 167888888655533
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC---CceeEcCCCccccccccCCCCc--E
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD---GTVKEIGPPAVYTSLDPSPDEK--Y 345 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~---G~~~~l~~~~~~~~~~~SpDGk--~ 345 (954)
....++.++++ +....|.. ..+..+.+||-+. .
T Consensus 144 -----------------------------------------v~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 144 -----------------------------------------VSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPF 181 (566)
T ss_pred -----------------------------------------hcceEEEEecCCccceeeeeec-cceeeEEecCCCCCce
Confidence 12345566652 22333332 4566778888643 3
Q ss_pred EEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE-eccCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE-TQDGG 423 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~-~~~~~ 423 (954)
||+-.-.. ...+..+.||... .+....+..-. .|. ...-.+.|.+-|..|++.+. .-|..
T Consensus 182 vAvyvPe~--------kGaPa~vri~~~~~~~~~~~~a~ks-------FFk---adkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 182 VAVYVPEK--------KGAPASVRIYKYPEEGQHQPVANKS-------FFK---ADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred EEEEccCC--------CCCCcEEEEeccccccccchhhhcc-------ccc---cceeEEEeccCCceEEEEEEEeecCC
Confidence 44332111 1123355555443 11111111100 000 11135889999998887743 22332
Q ss_pred CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCC
Q 002194 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (954)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 503 (954)
+.++ .+...||+++. +|...+.-....+.+..+.|+|+|+.++....... ..+-++|+.+. .+++...
T Consensus 244 n~SY--YGEq~Lyll~t---~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP--Akvtifnlr~~-----~v~df~e 311 (566)
T KOG2315|consen 244 NASY--YGEQTLYLLAT---QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP--AKVTIFNLRGK-----PVFDFPE 311 (566)
T ss_pred Cccc--cccceEEEEEe---cCceEEEecCCCCCceEEEECCCCCEEEEEEeccc--ceEEEEcCCCC-----EeEeCCC
Confidence 2221 23457899985 43333222345778899999999998776655444 45666777662 3333222
Q ss_pred CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEec
Q 002194 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALM 583 (954)
Q Consensus 504 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 583 (954)
+. + + .+-|+|-|+.|++..-+ . - ...+-+||... .+.|......
T Consensus 312 gp-R----N-~~~fnp~g~ii~lAGFG--------------N-L---~G~mEvwDv~n--~K~i~~~~a~---------- 355 (566)
T KOG2315|consen 312 GP-R----N-TAFFNPHGNIILLAGFG--------------N-L---PGDMEVWDVPN--RKLIAKFKAA---------- 355 (566)
T ss_pred CC-c----c-ceEECCCCCEEEEeecC--------------C-C---CCceEEEeccc--hhhccccccC----------
Confidence 21 1 1 16799999998887622 1 1 23488899876 3344443321
Q ss_pred cCCccccccccCCEEEEEEecCC
Q 002194 584 SDQTEGDLYLNQLKILTSKESKT 606 (954)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~s~~ 606 (954)
+..-..|+|||.+|+....++.
T Consensus 356 -~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred -CceEEEEcCCCcEEEEEecccc
Confidence 1112579999999987777643
No 227
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.65 E-value=2.5e-07 Score=97.91 Aligned_cols=231 Identities=13% Similarity=0.137 Sum_probs=145.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++.||.+|..++.++.+ ..|.+||+++ |+. +..+..+.
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD---------------------------------~~lKlwDtET----G~~--~~~f~~~~ 300 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFD---------------------------------RFLKLWDTET----GQV--LSRFHLDK 300 (503)
T ss_pred hhhhhhccccCCeeeeeecc---------------------------------eeeeeecccc----ceE--EEEEecCC
Confidence 56788999999998888775 5789999865 442 33344445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
....+.+.||+..+.++. .....|..+|..+|+..+-....-.. +..+.|-++|++++.++.
T Consensus 301 ~~~cvkf~pd~~n~fl~G--------~sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFissSD------ 362 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVG--------GSDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFISSSD------ 362 (503)
T ss_pred CceeeecCCCCCcEEEEe--------cCCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEeeecc------
Confidence 677889999998887763 23567888898888865443322222 668889999999887621
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCCc--cccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPA--VYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~~--~~~~~~~SpDGk~l~ 347 (954)
+ ..-.||.+...=..+.+.... ....+..+|.|++++
T Consensus 363 ---------------d--------------------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 363 ---------------D--------------------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred ---------------C--------------------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 1 112244433322333333332 234567899999999
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccc--ccCccceeeccCCCCceEEEEeccCCCc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV--RKGMRSINWRSDKPSTLYWAETQDGGDA 425 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~--~~g~~~~~wspDg~~i~~~~~~~~~~~~ 425 (954)
-.+.++ .|.++.+.-.- ++.... .|.++ .+..-.+.|||||+.|++-
T Consensus 402 aQs~dN-------------~i~ifs~~~~~--r~nkkK-------~feGh~vaGys~~v~fSpDG~~l~SG--------- 450 (503)
T KOG0282|consen 402 AQSMDN-------------YIAIFSTVPPF--RLNKKK-------RFEGHSVAGYSCQVDFSPDGRTLCSG--------- 450 (503)
T ss_pred hhccCc-------------eEEEEeccccc--ccCHhh-------hhcceeccCceeeEEEcCCCCeEEee---------
Confidence 888554 56666543110 010000 01111 1223458899999987776
Q ss_pred cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+..+.++.|+- .+......+..++..+..+.|.|-....+.+..
T Consensus 451 ----dsdG~v~~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 451 ----DSDGKVNFWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ----cCCccEEEeec--hhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 55778999984 233344556667778889999998766555443
No 228
>PTZ00420 coronin; Provisional
Probab=98.63 E-value=1.7e-05 Score=91.34 Aligned_cols=224 Identities=9% Similarity=0.048 Sum_probs=116.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCC-CCeEEEEEeeccccCCCCceEEEEEECCCCce--e-------
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R------- 232 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPD-G~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~------- 232 (954)
..|.+|++.. ......+.++ ...+....|+|+ +..|+..+ . ...|.++++..+.. .
T Consensus 54 gvI~L~~~~r---~~~v~~L~gH--~~~V~~lafsP~~~~lLASgS-------~--DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 54 GAIRLENQMR---KPPVIKLKGH--TSSILDLQFNPCFSEILASGS-------E--DLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred eEEEeeecCC---CceEEEEcCC--CCCEEEEEEcCCCCCEEEEEe-------C--CCeEEEEECCCCCccccccccceE
Confidence 3567777522 1122333332 246899999997 66666543 2 34556666654321 1
Q ss_pred ecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccc
Q 002194 233 PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312 (954)
Q Consensus 233 ~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~ 312 (954)
.+..+. ..+..+.|+|++..++++.. .
T Consensus 120 ~L~gH~-----~~V~sVaf~P~g~~iLaSgS------------------------------------------------~ 146 (568)
T PTZ00420 120 ILKGHK-----KKISIIDWNPMNYYIMCSSG------------------------------------------------F 146 (568)
T ss_pred EeecCC-----CcEEEEEECCCCCeEEEEEe------------------------------------------------C
Confidence 111111 22778999999987654410 1
Q ss_pred cceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCccc
Q 002194 313 TTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAED 389 (954)
Q Consensus 313 ~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~ 389 (954)
...|.++|+ ++. ...+.....+.+++|+|||+.|+.++.+ +.+.+||+.+++. ..+..+.....
T Consensus 147 DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCcEEEEEecccCCce
Confidence 234666777 554 3334333667899999999999877633 3899999986543 33333221100
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc--eeeccC-
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG--ISWCDD- 466 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~--~~~spD- 466 (954)
. .......|++|++.|+.. ..++ .....|.+||+ ...+.+......+..... +.|.++
T Consensus 214 --s------~~v~~~~fs~d~~~IlTt--G~d~-------~~~R~VkLWDl--r~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 214 --T------KNIWIDGLGGDDNYILST--GFSK-------NNMREMKLWDL--KNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred --e------EEEEeeeEcCCCCEEEEE--EcCC-------CCccEEEEEEC--CCCCCceEEEEecCCccceEEeeeCCC
Confidence 0 000112356888865554 1100 11236899996 222333333233332232 455555
Q ss_pred CceEEEEEeccccceEEEEEc
Q 002194 467 SLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d 487 (954)
|..++....+. ..++|.+.
T Consensus 275 g~l~lsGkGD~--tIr~~e~~ 293 (568)
T PTZ00420 275 GLIYLIGKGDG--NCRYYQHS 293 (568)
T ss_pred CCEEEEEECCC--eEEEEEcc
Confidence 55554443332 25566554
No 229
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.63 E-value=3.3e-06 Score=94.11 Aligned_cols=266 Identities=12% Similarity=0.087 Sum_probs=164.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++.+|.|...++.... ..|.+|+..+ .+ .+..++.+
T Consensus 375 dVRsl~vS~d~~~~~Sga~----------------------------------~SikiWn~~t----~k--ciRTi~~~- 413 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAG----------------------------------ESIKIWNRDT----LK--CIRTITCG- 413 (888)
T ss_pred heeEEEeecCceeeeecCC----------------------------------CcEEEEEccC----cc--eeEEeccc-
Confidence 5678888888866665554 3788998843 22 23223333
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....|-|.++.|+.... +..|-++|+.+......+...++. +.+++-+||++.++..
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k---------~Gel~vfdlaS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~-------- 472 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTK---------NGELQVFDLASASLVETIRAHDGA----IWSISLSPDNKGFVTG-------- 472 (888)
T ss_pred cEEEEEecCCCceEEEecc---------CCceEEEEeehhhhhhhhhccccc----eeeeeecCCCCceEEe--------
Confidence 6777889999998888442 456666677666554444433332 5677788999988866
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe----CCce---------eEcCCCccccc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL----DGTV---------KEIGPPAVYTS 336 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~----~G~~---------~~l~~~~~~~~ 336 (954)
+++ .+-.+|..-+ .|.. +.|.-...+..
T Consensus 473 -------------saD--------------------------ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 473 -------------SAD--------------------------KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLC 513 (888)
T ss_pred -------------cCC--------------------------cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEE
Confidence 222 1112222222 1322 22222256677
Q ss_pred cccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002194 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (954)
Q Consensus 337 ~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~ 415 (954)
+.+|||||+|++.-.++ ++.+|-+++=+. -.|..+. ..+..+..|||++.|+-
T Consensus 514 v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYGHk-------------LPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 514 VSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYGHK-------------LPVLSMDISPDSKLIVT 567 (888)
T ss_pred EEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeecccc-------------cceeEEeccCCcCeEEe
Confidence 89999999999987443 677777775332 2333332 33567889999997655
Q ss_pred EEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCc
Q 002194 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (954)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (954)
- +....|-+|.+ .=|.-.+-+..++..+..+.|.|+ ..++|+...++ .+-.+|.+. .+.
T Consensus 568 g-------------SADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~---kvKqWDg~k--Fe~ 626 (888)
T KOG0306|consen 568 G-------------SADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDG---KVKQWDGEK--FEE 626 (888)
T ss_pred c-------------cCCCceEEecc--ccchhhhhhhcccCceeEEEEccc-ceeEEEecCcc---eEEeechhh--hhh
Confidence 4 33334555554 125556777888888999999995 45677766553 455555444 233
Q ss_pred EEEecCCCCCccCCCCCCCeeeccCCcEEEEEEe
Q 002194 496 RILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 529 (954)
.+..+.+..+++- ++.+|+|.+++..+.
T Consensus 627 iq~L~~H~~ev~c------Lav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 627 IQKLDGHHSEVWC------LAVSPNGSFVVSSSH 654 (888)
T ss_pred heeeccchheeee------eEEcCCCCeEEeccC
Confidence 4445555555554 778999999887763
No 230
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=0.00018 Score=79.99 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.+.++++|.+.+.||....+ +.|-+|++..+- -..+.|++ +...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~---------------------------------g~IEiwN~~~~w--~~~~vi~g-~~dr 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD---------------------------------GNIEIWNLSNNW--FLEPVIHG-PEDR 70 (691)
T ss_pred ceEEEEEeccCCceeeeccC---------------------------------CcEEEEccCCCc--eeeEEEec-CCCC
Confidence 45678899999999888765 578899986422 23445554 3334
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+...+|++.| +| |... ....|--+|+.+++.+...+..+.. +-+++-.|.++.+++...
T Consensus 71 sIE~L~W~e~~-RL-FS~g--------~sg~i~EwDl~~lk~~~~~d~~gg~----IWsiai~p~~~~l~Igcd------ 130 (691)
T KOG2048|consen 71 SIESLAWAEGG-RL-FSSG--------LSGSITEWDLHTLKQKYNIDSNGGA----IWSIAINPENTILAIGCD------ 130 (691)
T ss_pred ceeeEEEccCC-eE-Eeec--------CCceEEEEecccCceeEEecCCCcc----eeEEEeCCccceEEeecC------
Confidence 78899999655 44 4332 3567888888887765544333321 334444577776665411
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce--eE-cCCC-ccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KE-IGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~--~~-l~~~-~~~~~~~~SpDGk 344 (954)
.+.|+.++. .+.+ .+ +... +.+-+++|+|+|.
T Consensus 131 -------------------------------------------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 131 -------------------------------------------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred -------------------------------------------CceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 113444444 3322 11 2222 6788899999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCce
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~ 377 (954)
+|+..+.+ +-|.+||+..+.
T Consensus 168 ~i~~Gs~D-------------g~Iriwd~~~~~ 187 (691)
T KOG2048|consen 168 KIAGGSID-------------GVIRIWDVKSGQ 187 (691)
T ss_pred EEEecccC-------------ceEEEEEcCCCc
Confidence 99988743 368899998543
No 231
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.62 E-value=1.5e-06 Score=94.93 Aligned_cols=243 Identities=16% Similarity=0.105 Sum_probs=158.1
Q ss_pred CCCceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcE
Q 002194 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (954)
Q Consensus 635 ~~~~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (954)
-..+.|...+.+.||..+...- .|..- ++.|+|++.||--..+.. .+..+|+ ...+-.|+++||-
T Consensus 44 ~gy~~E~h~V~T~DgYiL~lhR-Ip~~~-----~~rp~Vll~HGLl~sS~~---Wv~n~p~------~sLaf~LadaGYD 108 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGYILTLHR-IPRGK-----KKRPVVLLQHGLLASSSS---WVLNGPE------QSLAFLLADAGYD 108 (403)
T ss_pred cCCceEEEEEEccCCeEEEEee-ecCCC-----CCCCcEEEeecccccccc---ceecCcc------ccHHHHHHHcCCc
Confidence 3467899999999998554443 45431 458999999995322221 1111121 2345568899999
Q ss_pred EEEcCCCCCCCCCCcc-----------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-
Q 002194 715 ILGGPTTPIIGEGDEE-----------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH- 782 (954)
Q Consensus 715 V~~~~~~~~~G~G~~~-----------~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~- 782 (954)
|-.++.|| .-|++.. ..-.|.+-...|+-+.++++.+. ...+++..+|||.|+.....++...|+
T Consensus 109 VWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~ 185 (403)
T KOG2624|consen 109 VWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEY 185 (403)
T ss_pred eeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchh
Confidence 99988876 3344431 11223444678999999999886 355799999999999999999888864
Q ss_pred --cccEEEEeccCCCCCCC---------C---------CCCcc------------------cc-----------------
Q 002194 783 --LFCCGIARSGAYNRTLT---------P---------FGFQN------------------ED----------------- 807 (954)
Q Consensus 783 --~~~a~v~~~~~~~~~~~---------~---------~~~~~------------------~~----------------- 807 (954)
+++..++.+|+.-.... . +.+.. ..
T Consensus 186 ~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G 265 (403)
T KOG2624|consen 186 NKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVG 265 (403)
T ss_pred hhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcC
Confidence 68888888886421100 0 00000 00
Q ss_pred --------------------c--------------------hhhh---cHHHHHh-cCcccccCCCCCCEEEEEeCCCCC
Q 002194 808 --------------------R--------------------TLWE---ATSTYVE-MSPFMSANKLKKPILLVHGEEDNN 843 (954)
Q Consensus 808 --------------------~--------------------~~~~---~~~~~~~-~sp~~~~~~~~~P~Lii~G~~D~~ 843 (954)
+ .-|. +...|.. ..|...+.++++|+.+..|++|..
T Consensus 266 ~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l 345 (403)
T KOG2624|consen 266 WNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWL 345 (403)
T ss_pred cchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCccc
Confidence 0 0000 1111111 135667778899999999999999
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC--CCcccHHHHHHHHHHHHHHhc
Q 002194 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGY--AARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~--~~~~~~~~~~~~i~~fl~~~l 898 (954)
+. +++...+...+..... ...+.+++-+|.- ......+.+++.|++.++++.
T Consensus 346 ~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 346 AD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred CC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 98 8888888877766544 3333467778863 234457889999999988764
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=5.2e-06 Score=89.93 Aligned_cols=242 Identities=13% Similarity=0.146 Sum_probs=148.0
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
.+.++||+|....|.+.. +.+.++++... .+....|. ...
T Consensus 128 ~W~~qfs~dEsl~arlv~----------------------------------nev~f~~~~~f--~~~~~kl~----~~~ 167 (566)
T KOG2315|consen 128 GWVPQFSIDESLAARLVS----------------------------------NEVQFYDLGSF--KTIQHKLS----VSG 167 (566)
T ss_pred Ccccccccchhhhhhhhc----------------------------------ceEEEEecCCc--cceeeeee----ccc
Confidence 468999999988877766 37889888442 24445553 235
Q ss_pred ccceeecCCCC--eEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 191 LNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 191 ~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
++...+||-+. .||+-. ....+.....+||.+.. .+....+.... .+.+.--.+.|.+-|.-|.+..
T Consensus 168 i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~-~~~~~~~a~ks--FFkadkvqm~WN~~gt~LLvLa------ 236 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPE-EGQHQPVANKS--FFKADKVQMKWNKLGTALLVLA------ 236 (566)
T ss_pred eeeEEecCCCCCceEEEEc--cCCCCCCcEEEEecccc-ccccchhhhcc--ccccceeEEEeccCCceEEEEE------
Confidence 78888998654 444432 21122234456666652 22222221110 1111123678999988666551
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCce--eEcCCCccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTV--KEIGPPAVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~--~~l~~~~~~~~~~~SpDGk~l 346 (954)
..+-|.....||+...||.++.+|+. ..+...+.+.++.|||+|+-.
T Consensus 237 -------------------------------stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 237 -------------------------------STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred -------------------------------EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence 12234445677899999999997654 444445889999999999988
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
++.-.-- +..+-++|+++.-+-.+...+ ...+-|+|.|+.|++. .. |
T Consensus 286 ~VvyGfM-----------PAkvtifnlr~~~v~df~egp---------------RN~~~fnp~g~ii~lA-GF--G---- 332 (566)
T KOG2315|consen 286 AVVYGFM-----------PAKVTIFNLRGKPVFDFPEGP---------------RNTAFFNPHGNIILLA-GF--G---- 332 (566)
T ss_pred EEEEecc-----------cceEEEEcCCCCEeEeCCCCC---------------ccceEECCCCCEEEEe-ec--C----
Confidence 7776332 347888999876544333321 1347799999977775 00 0
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeeccc-ccCceeeccCCceEEEEEe
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDL-RYGGISWCDDSLALVYESW 475 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~-~~~~~~~spDg~~l~~~~~ 475 (954)
.-.+.+-+||+ .. .+.+..... +.....|||||++++.+..
T Consensus 333 ---NL~G~mEvwDv---~n--~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 333 ---NLPGDMEVWDV---PN--RKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ---CCCCceEEEec---cc--hhhccccccCCceEEEEcCCCcEEEEEec
Confidence 12456778886 22 334443332 3345799999999998763
No 233
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=3.5e-05 Score=82.61 Aligned_cols=299 Identities=13% Similarity=0.150 Sum_probs=159.9
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 106 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
+..+.+..+.|||.|++|..-+.. ++ ++++. ..+-....+++.+||..+ +. .+..+
T Consensus 69 ~~~~~V~~~~fSP~~kYL~tw~~~---pi--------------~~pe~-e~sp~~~~n~~~vwd~~s----g~--iv~sf 124 (561)
T COG5354 69 FRHPDVKYLDFSPNEKYLVTWSRE---PI--------------IEPEI-EISPFTSKNNVFVWDIAS----GM--IVFSF 124 (561)
T ss_pred eecCCceecccCcccceeeeeccC---Cc--------------cChhh-ccCCccccCceeEEeccC----ce--eEeec
Confidence 445678899999999999877664 11 01111 111111113688999853 22 12112
Q ss_pred CCC--Ccc--cceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc-ccccceeEecCC--eEE
Q 002194 186 PDG--AKL--NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-AIFDNFVWVNNS--TLL 258 (954)
Q Consensus 186 ~~~--~~~--~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~~~~wspDG--~~l 258 (954)
..- ... ....||-|.+.+|.+. ...|+++++ ++...+. +-..+. -++..+.|||.| ..|
T Consensus 125 ~~~~q~~~~Wp~~k~s~~D~y~ARvv----------~~sl~i~e~-t~n~~~~---p~~~lr~~gi~dFsisP~~n~~~l 190 (561)
T COG5354 125 NGISQPYLGWPVLKFSIDDKYVARVV----------GSSLYIHEI-TDNIEEH---PFKNLRPVGILDFSISPEGNHDEL 190 (561)
T ss_pred cccCCcccccceeeeeecchhhhhhc----------cCeEEEEec-CCccccC---chhhccccceeeEEecCCCCCceE
Confidence 110 111 2458999999999875 578899886 4433222 111011 126789999864 556
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-cccccc
Q 002194 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSL 337 (954)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~ 337 (954)
+|.++...+. | +.-.||.+..+..+...+-. ..--.+
T Consensus 191 a~~tPEk~~k-------p-----------------------------------a~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 191 AYWTPEKLNK-------P-----------------------------------AMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred EEEccccCCC-------C-----------------------------------cEEEEEEccCCCeeeeeeeEeecccEE
Confidence 7664332222 0 22234444432222211111 222356
Q ss_pred ccCCCCcEEEEEeecCCcccccccCCC-CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 338 DPSPDEKYILISSIHRPYSFIVPCGRF-PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 338 ~~SpDGk~l~~~s~~~~~~~~~~~~~~-~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
.|.+.|++|++...+.-.+.. .-| ..+++|+++.+..++...... +-+-++.|+|++++.+..
T Consensus 229 kW~~~g~~ll~l~~t~~ksnK---syfgesnLyl~~~~e~~i~V~~~~~-------------~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNK---SYFGESNLYLLRITERSIPVEKDLK-------------DPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred EEecCCceEEEEEEEeeeccc---ceeccceEEEEeecccccceecccc-------------ccceeeeecccCCceeEE
Confidence 799999999887654321110 001 248999998855443322111 224578999999998776
Q ss_pred EEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcE
Q 002194 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (954)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (954)
...++ ..+-.+++ .+. . +....+..-..+.|||.+++|+++.-.+. +..+-+++..+. ..
T Consensus 293 ~g~~p-----------a~~s~~~l---r~N-l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl-~gni~i~~~~~r---f~ 352 (561)
T COG5354 293 SGYMP-----------ASVSVFDL---RGN-L-RFYFPEQKRNTIFFSPHERYILFAGFDNL-QGNIEIFDPAGR---FK 352 (561)
T ss_pred ecccc-----------cceeeccc---ccc-e-EEecCCcccccccccCcccEEEEecCCcc-ccceEEeccCCc---eE
Confidence 32221 12334443 332 2 22233444456789999999999865543 355677777663 23
Q ss_pred EE--ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 497 IL--FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 497 ~l--~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.+ ++..... ..-|||||.++....
T Consensus 353 ~~~~~~~~n~s--------~~~wspd~qF~~~~~ 378 (561)
T COG5354 353 VAGAFNGLNTS--------YCDWSPDGQFYDTDT 378 (561)
T ss_pred EEEEeecCCce--------EeeccCCceEEEecC
Confidence 33 2222111 145999998765443
No 234
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.54 E-value=8.5e-06 Score=82.32 Aligned_cols=118 Identities=22% Similarity=0.248 Sum_probs=73.8
Q ss_pred HHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcC
Q 002194 743 AEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMS 821 (954)
Q Consensus 743 ~~~av~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 821 (954)
+.+-+.-.++ ...++.++.+|+|||+||.+++.++..+|+.|.+.++++|.+- |.+...+....
T Consensus 120 L~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW---------------w~n~~~l~~~~ 184 (264)
T COG2819 120 LTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW---------------WHNEAILREIE 184 (264)
T ss_pred HHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh---------------hCCHHHhcccc
Confidence 3344443333 4668999999999999999999999999999999999998532 23332232222
Q ss_pred cccccCCCCCCEEEEE--eCCCCCCCC----chHHHHHHHHHHHh-CCCcEEEEEeCCCCCcC
Q 002194 822 PFMSANKLKKPILLVH--GEEDNNSGT----LTMQSDRFFNALKG-HGALCRLVILPFESHGY 877 (954)
Q Consensus 822 p~~~~~~~~~P~Lii~--G~~D~~v~~----~~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~ 877 (954)
-.... + ..+++|.- |+.|.-... ...++.+..+.++. .|....+..+|+.+|.-
T Consensus 185 ~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~ 245 (264)
T COG2819 185 SLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS 245 (264)
T ss_pred ccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc
Confidence 22222 2 33444444 444442210 02334444555555 67788888999888874
No 235
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=1.7e-05 Score=83.17 Aligned_cols=275 Identities=17% Similarity=0.128 Sum_probs=146.0
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecC
Q 002194 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (954)
Q Consensus 106 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~ 185 (954)
++......+.+||||+.++....- ++-- .|+--..-|-+||..+ +.....|. +
T Consensus 33 i~~g~~~~~~~spdgk~~y~a~T~-------------------~sR~----~rG~RtDvv~~~D~~T---L~~~~EI~-i 85 (342)
T PF06433_consen 33 IDTGFLGNVALSPDGKTIYVAETF-------------------YSRG----TRGERTDVVEIWDTQT---LSPTGEIE-I 85 (342)
T ss_dssp EEEESSEEEEE-TTSSEEEEEEEE-------------------EEET----TEEEEEEEEEEEETTT---TEEEEEEE-E
T ss_pred eecccCCceeECCCCCEEEEEEEE-------------------Eecc----ccccceeEEEEEecCc---CcccceEe-c
Confidence 344456678899999999875441 1111 1111113466777643 11222221 2
Q ss_pred CCC------CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 186 PDG------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 186 ~~~------~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
|.. ......+.|.|||++++.+-++ ...|-++|++.++...-.+.++- ...+-+.+++ +.
T Consensus 86 P~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PGC-----~~iyP~~~~~--F~ 151 (342)
T PF06433_consen 86 PPKPRAQVVPYKNMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPGC-----WLIYPSGNRG--FS 151 (342)
T ss_dssp TTS-B--BS--GGGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTSE-----EEEEEEETTE--EE
T ss_pred CCcchheecccccceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCCE-----EEEEecCCCc--eE
Confidence 211 2456678999999999987655 78999999998876554444442 1122222322 11
Q ss_pred EEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeE----cCCC--
Q 002194 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKE----IGPP-- 331 (954)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~----l~~~-- 331 (954)
.. .+.+.+..+.+ +|+..+ +...
T Consensus 152 ~l-------------------------------------------------C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~ 182 (342)
T PF06433_consen 152 ML-------------------------------------------------CGDGSLLTVTLDADGKEAQKSTKVFDPDD 182 (342)
T ss_dssp EE-------------------------------------------------ETTSCEEEEEETSTSSEEEEEEEESSTTT
T ss_pred EE-------------------------------------------------ecCCceEEEEECCCCCEeEeeccccCCCC
Confidence 11 12333445555 454322 1111
Q ss_pred -ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 -~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..+.++.++.+++|.+ |.++++-.|+.+...+..............-....+|..-+++.+..
T Consensus 183 dp~f~~~~~~~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 183 DPLFEHPAYSRDGGRLYFVS-------------YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp S-B-S--EEETTTTEEEEEB-------------TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred cccccccceECCCCeEEEEe-------------cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 2334666777788888888 45589888988776554433221100001112233455568888877
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+++++.......+.- -++...||++|+ .++...+++ ..+..+.+++.|.|.+-++|+.+..+ ..|+++|..+
T Consensus 250 ~rlyvLMh~g~~gsH---KdpgteVWv~D~--~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~t 321 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSH---KDPGTEVWVYDL--KTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAAT 321 (342)
T ss_dssp TEEEEEEEE--TT-T---TS-EEEEEEEET--TTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT
T ss_pred CeEEEEecCCCCCCc---cCCceEEEEEEC--CCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcC
Confidence 777776553321111 133458999996 333233333 22345678999999998888766543 5699999998
Q ss_pred C
Q 002194 491 K 491 (954)
Q Consensus 491 ~ 491 (954)
|
T Consensus 322 G 322 (342)
T PF06433_consen 322 G 322 (342)
T ss_dssp -
T ss_pred C
Confidence 6
No 236
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.53 E-value=2.6e-07 Score=97.14 Aligned_cols=214 Identities=21% Similarity=0.221 Sum_probs=121.2
Q ss_pred eEEEEEEcC-CCeEEEEEEEcCCCCCC-CCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEE
Q 002194 639 KELIKYQRK-DGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (954)
Q Consensus 639 ~~~~~~~~~-~g~~l~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (954)
...+++... ++.++...+|+|..... -..+++|+|++.||-.. .. ..| ...+..|++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs-------~~----~~f----~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGS-------YV----TGF----AWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCC-------Cc----cch----hhhHHHHhhCceEEE
Confidence 344555433 46788889999876432 01146999999999410 11 111 245778999999999
Q ss_pred EcCCCCCCCCCCcccc--------hhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 717 GGPTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRR---G----VAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~--------~~~~~~~~~D~~~av~~l~~~---~----~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
..+.-++. .|+.... ...+-....|+...+++|.+. + .+|+.+|+++|||+||+.++.+++...
T Consensus 103 ~~~hpgs~-~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 103 APDHPGSN-AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred eccCCCcc-cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 85554332 2222110 011123457788888888776 4 588999999999999999999987653
Q ss_pred Cc---c-cEE----EEecc-CCCCCCCCCCCccccchhhhcHHHHHhcC----------cc-------cccCCCCCCEEE
Q 002194 782 HL---F-CCG----IARSG-AYNRTLTPFGFQNEDRTLWEATSTYVEMS----------PF-------MSANKLKKPILL 835 (954)
Q Consensus 782 ~~---~-~a~----v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----------p~-------~~~~~~~~P~Li 835 (954)
+. . .|. ++..+ ..+.. ...+....|.....|...+ |. .-+.+++.|+++
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~~-----~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~ 256 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNGR-----LLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLL 256 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcChh-----hhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceee
Confidence 31 0 111 11111 00000 0000011111111121111 11 134567899999
Q ss_pred EEeCCCCCCCCchH-HHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 836 VHGEEDNNSGTLTM-QSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 836 i~G~~D~~v~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
+.|..|...| +. +....+..|. |....+...|++.|.-
T Consensus 257 ~a~s~D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 257 AAGSADGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred ecccccccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 9999999776 33 3344444443 3445677889999964
No 237
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.52 E-value=4.4e-06 Score=94.12 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=62.0
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH----HHH
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LLA 778 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~ 778 (954)
.+.++|+++||.|+..+- ..-+.+...-.+-.. ++.+.+|++.+++. ...++|.++|+|+||.+++. +++
T Consensus 238 SlVr~lv~qG~~VflIsW---~nP~~~~r~~~ldDY-v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA 311 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISW---RNPDKAHREWGLSTY-VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQA 311 (560)
T ss_pred hHHHHHHHcCCeEEEEeC---CCCChhhcCCCHHHH-HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHh
Confidence 578899999999999433 232223222222222 35788888888876 34568999999999999997 677
Q ss_pred hCCC-cccEEEEeccCCC
Q 002194 779 HAPH-LFCCGIARSGAYN 795 (954)
Q Consensus 779 ~~p~-~~~a~v~~~~~~~ 795 (954)
++++ +++.++.++...|
T Consensus 312 ~~~~~~V~sltllatplD 329 (560)
T TIGR01839 312 LGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred cCCCCceeeEEeeecccc
Confidence 7775 7999988877665
No 238
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=1.4e-06 Score=99.30 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=119.6
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceee
Q 002194 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (954)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~ 181 (954)
|.+-+.+ +...+++|-+|+++|+.+.+ ..|.+.++. |+ +..+.
T Consensus 91 iL~Rftl-p~r~~~v~g~g~~iaagsdD---------------------------------~~vK~~~~~-D~--s~~~~ 133 (933)
T KOG1274|consen 91 ILARFTL-PIRDLAVSGSGKMIAAGSDD---------------------------------TAVKLLNLD-DS--SQEKV 133 (933)
T ss_pred eeeeeec-cceEEEEecCCcEEEeecCc---------------------------------eeEEEEecc-cc--chhee
Confidence 4444545 67789999999999999986 577888874 33 44455
Q ss_pred eecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceee-cccC---CCccccccccceeEecCCeE
Q 002194 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQS---PDIYLNAIFDNFVWVNNSTL 257 (954)
Q Consensus 182 lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~---~~~~~~~~~~~~~wspDG~~ 257 (954)
+.++ .+.+..+.++|.|+.||.... ++.|.+++++.+.... ++.. .+...+.....++|+|+|..
T Consensus 134 lrgh--~apVl~l~~~p~~~fLAvss~---------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 134 LRGH--DAPVLQLSYDPKGNFLAVSSC---------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred eccc--CCceeeeeEcCCCCEEEEEec---------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 5443 357999999999999998663 5677777887765432 2211 11111223457899999655
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCce-eEcC-CC--c
Q 002194 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIG-PP--A 332 (954)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~-~~l~-~~--~ 332 (954)
+++. +. ...+.+++. +.+. ..+. .. .
T Consensus 203 la~~---------------------~~----------------------------d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 203 LAVP---------------------PV----------------------------DNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEee---------------------cc----------------------------CCeEEEEccCCceeheeeccccccc
Confidence 5544 11 112334444 3221 1111 11 3
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
.+...+|||.|+|||.+..++ .|-|||+++-+. +... ..+..++|-|++..
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g-------------~I~vWnv~t~~~-----~~~~-----------~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDG-------------QILVWNVDTHER-----HEFK-----------RAVCCEAWKPNANA 284 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCC-------------cEEEEecccchh-----cccc-----------ceeEEEecCCCCCe
Confidence 377889999999999988543 899999986221 1100 12345678888887
Q ss_pred ceEEE
Q 002194 413 TLYWA 417 (954)
Q Consensus 413 i~~~~ 417 (954)
|-+..
T Consensus 285 it~~~ 289 (933)
T KOG1274|consen 285 ITLIT 289 (933)
T ss_pred eEEEe
Confidence 76653
No 239
>PRK10115 protease 2; Provisional
Probab=98.51 E-value=2.2e-05 Score=94.08 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc--eeeeecCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ--EIEIQGFPDG 188 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~--~~~lt~~~~~ 188 (954)
.....+||||++|||..+. .++.. .+|++.++.+ +. ...+..
T Consensus 129 l~~~~~Spdg~~la~~~d~----------------------~G~E~------~~l~v~d~~t----g~~l~~~i~~---- 172 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF----------------------LSRRQ------YGIRFRNLET----GNWYPELLDN---- 172 (686)
T ss_pred EeEEEECCCCCEEEEEecC----------------------CCcEE------EEEEEEECCC----CCCCCccccC----
Confidence 4567899999999999763 22222 3799999853 33 222321
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCCCccccccccceeEec-CCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wsp-DG~~l~~~ 261 (954)
.. ....|++||+.|+|++... ......+||+.++.++ +.+.+....... .....|.+ |++.+++.
T Consensus 173 ~~-~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~ 240 (686)
T PRK10115 173 VE-PSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPASQDELVYEEKDDT----FYVSLHKTTSKHYVVIH 240 (686)
T ss_pred cc-eEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChhHCeEEEeeCCCC----EEEEEEEcCCCCEEEEE
Confidence 12 4589999999999987521 1123479999999988 555565533321 11233444 88887754
No 240
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.49 E-value=8.1e-07 Score=92.00 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=117.5
Q ss_pred CccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc-hhhHHHHHHHHHHH
Q 002194 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN-DRFVEQLVACAEAA 746 (954)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~-~~~~~~~~~D~~~a 746 (954)
+.|.++.+||-. ++...|.. ....|+. .|--|+. .|-+-+|.+..- ........+|+...
T Consensus 51 ~~Pp~i~lHGl~-----------GS~~Nw~s----v~k~Ls~~l~~~v~~---vd~RnHG~Sp~~~~h~~~~ma~dv~~F 112 (315)
T KOG2382|consen 51 RAPPAIILHGLL-----------GSKENWRS----VAKNLSRKLGRDVYA---VDVRNHGSSPKITVHNYEAMAEDVKLF 112 (315)
T ss_pred CCCceEEecccc-----------cCCCCHHH----HHHHhcccccCceEE---EecccCCCCccccccCHHHHHHHHHHH
Confidence 478899999931 11122321 2333333 3445555 344456666432 22356677888888
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHH-HHHHHHHHhCCCcccEEEEec--c-CCCCCC------------CCCC--------
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIARS--G-AYNRTL------------TPFG-------- 802 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~--~-~~~~~~------------~~~~-------- 802 (954)
++........ .++.+.|||||| .+++..+...|+++.-+|... | .+.... .+..
T Consensus 113 i~~v~~~~~~--~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rk 190 (315)
T KOG2382|consen 113 IDGVGGSTRL--DPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRK 190 (315)
T ss_pred HHHccccccc--CCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHH
Confidence 7777644333 479999999999 777777778888766555542 3 111000 0000
Q ss_pred ----------------------Cc---cccchhhhc-----HHHHHh---cC---cccccCCCCCCEEEEEeCCCCCCCC
Q 002194 803 ----------------------FQ---NEDRTLWEA-----TSTYVE---MS---PFMSANKLKKPILLVHGEEDNNSGT 846 (954)
Q Consensus 803 ----------------------~~---~~~~~~~~~-----~~~~~~---~s---p~~~~~~~~~P~Lii~G~~D~~v~~ 846 (954)
+. ......|.- .+.+.+ .+ .+.+ .....|+|+++|.++..++
T Consensus 191 e~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~-~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 191 EALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLED-GPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccc-cccccceeEEecCCCCCcC-
Confidence 00 000001110 111111 11 1222 4456899999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.++-.++...+.. ++++.++++||+.. .++.+.+.+.|.+|+.++
T Consensus 269 -~~~~~~~~~~fp~----~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 -DEHYPRMEKIFPN----VEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred -hhHHHHHHHhccc----hheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5555555444333 79999999999985 778899999999988764
No 241
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.48 E-value=2.4e-07 Score=109.95 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCC-CCCCCCcc
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGEGDEE 730 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~G~~~ 730 (954)
|...||.|.....+. ++|++||+|||.|..+..... .......++.++++||..+||- ..|+-...
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~~~~-----------~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~ 175 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSGSFP-----------PYDGASLAASKDVIVVTINYRLGAFGFLSLG 175 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTTSSCTTSG-----------GGHTHHHHHHHTSEEEEE----HHHHH-BSS
T ss_pred HHHhhhhcccccccc--ccceEEEeecccccCCCcccc-----------cccccccccCCCEEEEEeccccccccccccc
Confidence 777899998754432 599999999997655432100 0112345678999999988852 22221110
Q ss_pred cchh-hHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccC
Q 002194 731 ANDR-FVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (954)
Q Consensus 731 ~~~~-~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (954)
.... .+...+.|...|++|++++ -.-||++|-|+|+|+||..+..++... ..+|+.+|+.+|.
T Consensus 176 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 176 DLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred ccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 0111 2456789999999999986 236999999999999999998877653 2689999999984
No 242
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.46 E-value=3.6e-07 Score=99.31 Aligned_cols=128 Identities=22% Similarity=0.206 Sum_probs=86.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEEEEcCCC-CCCCCCC-
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGEGD- 728 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~-~~~G~G~- 728 (954)
+...||.|+ .+. .+.|++||+|||.|..+..+... + ....|+++| ++|+..+|+ +-.|+=.
T Consensus 80 L~LNIwaP~--~~a--~~~PVmV~IHGG~y~~Gs~s~~~------y------dgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPE--VPA--EKLPVMVYIHGGGYIMGSGSEPL------Y------DGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccC--CCC--CCCcEEEEEeccccccCCCcccc------c------ChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 677888897 222 24899999999976655432211 1 144688888 888887775 3333211
Q ss_pred -ccc--chhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEeccCCC
Q 002194 729 -EEA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (954)
Q Consensus 729 -~~~--~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~~ 795 (954)
+.. ........+.|++.|++|++++ -.-||+.|-|+|.|+||+.++.+++.. ..+|+-+|+.+|...
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 000 0111124578999999999886 346999999999999999999887652 246887888887543
No 243
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=3.3e-06 Score=95.80 Aligned_cols=198 Identities=16% Similarity=0.112 Sum_probs=114.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+..++||-++ .|+-.+. ...+-+|++...+.-.++.+.+. +.-++|.|-.+..|.+..
T Consensus 370 ~DILDlSWSKn~-fLLSSSM---------DKTVRLWh~~~~~CL~~F~Hndf-----VTcVaFnPvDDryFiSGS----- 429 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSM---------DKTVRLWHPGRKECLKVFSHNDF-----VTCVAFNPVDDRYFISGS----- 429 (712)
T ss_pred hhheecccccCC-eeEeccc---------cccEEeecCCCcceeeEEecCCe-----eEEEEecccCCCcEeecc-----
Confidence 378899999654 6766553 33444456666777777776663 778999987776666511
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
- | +.-+|| ++ +.++..-+.- ..++.++++|||+..
T Consensus 430 ---------------L-------------------D-------~KvRiW--sI~d~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 430 ---------------L-------------------D-------GKVRLW--SISDKKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred ---------------c-------------------c-------cceEEe--ecCcCeeEeehhhhhhheeEEeccCCceE
Confidence 0 1 222344 44 3333333332 778999999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEeccCceEEE---eccCCCcccCCccccccccCccceeeccCCC-CceEEEEeccC
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE---LCDLPLAEDIPIAFNSVRKGMRSINWRSDKP-STLYWAETQDG 422 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~---l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~-~i~~~~~~~~~ 422 (954)
++.+. .+...+|+..+-+... |....... .....+.++.|.|-.. .+++.
T Consensus 467 vIGt~-------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVT------ 520 (712)
T KOG0283|consen 467 VIGTF-------------NGYCRFYDTEGLKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVT------ 520 (712)
T ss_pred EEEEe-------------ccEEEEEEccCCeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEe------
Confidence 99883 3478888887755432 22211110 1112355677776333 35454
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccc---cCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~---~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
+...+|.++|. .........++-.. -...+|+.||++|+.++++.. ..||.++
T Consensus 521 -------SnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~--VYiW~~~ 576 (712)
T KOG0283|consen 521 -------SNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW--VYIWKND 576 (712)
T ss_pred -------cCCCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce--EEEEeCC
Confidence 44567888773 11222111122111 234689999999999984432 4455443
No 244
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.45 E-value=1.1e-06 Score=91.26 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=132.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|.|+|++|+..+ ..|...|| +..+=.-.-+....+. .+..+.||++|.+++..
T Consensus 98 ~V~~v~WtPeGRRLltgs-------~SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSg-------- 156 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGS-------QSGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISG-------- 156 (464)
T ss_pred ceeeEEEcCCCceeEeec-------ccccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEc--------
Confidence 578899999999999976 34466777 3211011111111221 27789999999998854
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC--ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~ 347 (954)
++ + +.-.+|..+.+ .++.+... ..++.++|||.....+
T Consensus 157 ---------------D~-----------------g-------G~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 157 ---------------DK-----------------G-------GMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred ---------------CC-----------------C-------ceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeE
Confidence 10 0 11112222221 11111111 5678999999776666
Q ss_pred EEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (954)
..+.+ +.|.|||.. .++.+.|..+. ..+.++.|.|....|+..
T Consensus 197 t~SdD-------------g~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kgLiasg---------- 240 (464)
T KOG0284|consen 197 TCSDD-------------GTIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKGLIASG---------- 240 (464)
T ss_pred EecCC-------------CeEEEEeccCCchhheeccCC-------------CCcceeccCCccceeEEc----------
Confidence 66644 389999987 45555564432 345788999977655444
Q ss_pred ccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCc
Q 002194 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (954)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 506 (954)
+..+.|-+|| |..|...-.|..+...+..+.|+|+|.+|+..+.+.. +.++|+.+- +....+..+..++
T Consensus 241 ---skDnlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~----~kv~DiR~m--kEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 241 ---SKDNLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS----CKVFDIRTM--KELFTYRGHKKDV 309 (464)
T ss_pred ---cCCceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce----EEEEehhHh--HHHHHhhcchhhh
Confidence 3344677888 5677777777778888899999999999988865543 444444421 1122233333333
Q ss_pred cCCCCCCCeeeccCCcEEEE
Q 002194 507 YSDPGSPMMRRTSTGTYVIA 526 (954)
Q Consensus 507 ~~~~~~~~~~~spdG~~l~~ 526 (954)
.. +.|+|--.-|+.
T Consensus 310 ~~------~~WhP~~~~lft 323 (464)
T KOG0284|consen 310 TS------LTWHPLNESLFT 323 (464)
T ss_pred ee------ecccccccccee
Confidence 33 567775554443
No 245
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.43 E-value=1e-05 Score=79.11 Aligned_cols=206 Identities=16% Similarity=0.185 Sum_probs=110.8
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+.-.+|.+|..|--+|+.-.+.+ .|+||+.-|.. +-.......+.+|+.+||.|+.++...-
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~~---~~tiliA~Gf~---------------rrmdh~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPKR---NNTILIAPGFA---------------RRMDHFAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT----------------GGGGGGHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCccc---CCeEEEecchh---------------HHHHHHHHHHHHHhhCCeEEEecccccc
Confidence 44568999999999998643333 78999888742 1112234577889999999999555433
Q ss_pred CCCCCccc--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC--
Q 002194 724 IGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-- 799 (954)
Q Consensus 724 ~G~G~~~~--~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~-- 799 (954)
.| .+.+ .+-.......|+..+++||.+.+. .+++++--|.-|-+|..+++.. + ..-+|...|+.|+..+
T Consensus 69 vG--lSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe 141 (294)
T PF02273_consen 69 VG--LSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLE 141 (294)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHH
T ss_pred cc--CCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHH
Confidence 44 3433 333455678999999999997763 5799999999999999999865 4 6777777788773221
Q ss_pred ---CC---CCcccc---chhhh----cHHHH------Hhc----CcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHH
Q 002194 800 ---PF---GFQNED---RTLWE----ATSTY------VEM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (954)
Q Consensus 800 ---~~---~~~~~~---~~~~~----~~~~~------~~~----sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~ 856 (954)
.+ ..+.+. ....+ ..+.| ..+ |....++++.+|++.+++.+|.-|. ..+..++..
T Consensus 142 ~al~~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~ 219 (294)
T PF02273_consen 142 KALGYDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLD 219 (294)
T ss_dssp HHHSS-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHT
T ss_pred HHhccchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHH
Confidence 00 000000 00000 00111 011 3445678889999999999999886 666666655
Q ss_pred HHHhCCCcEEEEEeCCCCCcCC
Q 002194 857 ALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
.+.. ..++++..+|..|.+.
T Consensus 220 ~~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 220 NINS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp T-TT----EEEEEETT-SS-TT
T ss_pred hcCC--CceeEEEecCccchhh
Confidence 4433 3589999999999984
No 246
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=7.3e-06 Score=83.93 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=92.5
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..++++.|.+||-.++-.+-.. ..+.|||++++...+|.... .+|...+.|||||.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~~g------------lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIPKG------------LGGFSLLKWSPDGD 251 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccccC------------CCceeeEEEcCCCC
Confidence 5678899999999998877432 27899999987766655211 14556789999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.+... +- .....+|.. ...-...+..-..+.+....|||+|+.|+|+.... ..||.+..++.
T Consensus 252 ~lfaA--t~-----------davfrlw~e--~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 252 VLFAA--TC-----------DAVFRLWQE--NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGE 313 (445)
T ss_pred EEEEe--cc-----------cceeeeehh--cccceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCC
Confidence 66544 11 112233421 01111112222344788899999999999987554 46777665543
Q ss_pred CCC---------cEEEecCCCCCcc-C--C-CC-CCCeeeccCCcEEEEEEee
Q 002194 492 DVA---------PRILFDRSSEDVY-S--D-PG-SPMMRRTSTGTYVIAKIKK 530 (954)
Q Consensus 492 ~~~---------~~~l~~~~~~~~~-~--~-~~-~~~~~~spdG~~l~~~~~~ 530 (954)
... ...+.+...-..- + . .+ ...++|.|-|.+|+...++
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 211 1111111110000 0 0 01 1238999999999988754
No 247
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.40 E-value=0.00026 Score=80.52 Aligned_cols=352 Identities=14% Similarity=0.085 Sum_probs=171.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.+.+||++. .+..-++.-.+.+.+....+-| |+-|++++. .+....+|+.|...|.+|.|-...+ .
T Consensus 267 G~m~~wDLe~----kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~------~DnSlk~~vfD~~dg~pR~LR~R~G--H 333 (910)
T KOG1539|consen 267 GDMAFWDLEK----KKLINVTRNAHYGSVTGATFLP-GEPVLVTAG------ADNSLKVWVFDSGDGVPRLLRSRGG--H 333 (910)
T ss_pred ceEEEEEcCC----CeeeeeeeccccCCcccceecC-CCceEeecc------CCCceeEEEeeCCCCcchheeeccC--C
Confidence 3688999943 2222121111222466667776 777888653 4567889999977777777754322 1
Q ss_pred cccccceeEe-cCCeEEEEEecCCCCCC-C---CCCCCCCCC--------c--eeeccCC--ceeeechhhhhccCcccc
Q 002194 243 NAIFDNFVWV-NNSTLLVCTIPLLRGDP-P---KKPLVPLGP--------K--MQSNEKR--DIIQVRTFQDLLKDEYDE 305 (954)
Q Consensus 243 ~~~~~~~~ws-pDG~~l~~~~~~~~~~~-~---~~~~~~~~~--------~--~~~~~~~--~~~~~r~~~d~l~~~~d~ 305 (954)
.+...-+.+- -.|..|..+..+..-.. . ..-.+.+|. + ..+.+.. ..+..=.....-...++.
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 2223344454 45555554422211000 0 000000000 0 0000000 000000000000111222
Q ss_pred ccccccccceEEEEEe-C---CceeEcCC----C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc
Q 002194 306 DLFDYYATTQLVLVSL-D---GTVKEIGP----P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (954)
Q Consensus 306 ~~~~~~~~~~l~~~~~-~---G~~~~l~~----~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~ 376 (954)
-...+.+...++.++. . |+-..-+. . .....++.|+-|...+..... +.|.++++..+
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSG 480 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSG 480 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccC
Confidence 2223335566777776 3 33222222 2 556788899999887776533 37888888866
Q ss_pred eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--
Q 002194 377 FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-- 454 (954)
Q Consensus 377 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-- 454 (954)
..+.-........ ..+++ .+-|+..-... ..+..+.+-.|+. .++. .+...
T Consensus 481 i~r~sf~~~~ah~---------~~V~g--la~D~~n~~~v-----------sa~~~Gilkfw~f---~~k~--l~~~l~l 533 (910)
T KOG1539|consen 481 IHRKSFGDSPAHK---------GEVTG--LAVDGTNRLLV-----------SAGADGILKFWDF---KKKV--LKKSLRL 533 (910)
T ss_pred eeecccccCcccc---------CceeE--EEecCCCceEE-----------EccCcceEEEEec---CCcc--eeeeecc
Confidence 5433221000000 11112 23334321111 1134557777775 3332 22211
Q ss_pred ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCC
Q 002194 455 DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDE 534 (954)
Q Consensus 455 ~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~ 534 (954)
...+..+..+.....++.+..+ ..|.++|..+. .....+.++...+.. +.|||||+||+...++.
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~dd----f~I~vvD~~t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~--- 598 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDD----FSIRVVDVVTR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS--- 598 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCc----eeEEEEEchhh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---
Confidence 1222334444444444443222 45788887763 223333334333333 78999999999988432
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEE
Q 002194 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQ 614 (954)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~ 614 (954)
.|.+||+-++.......-+.. -...+|||.|.+++.++.+. ..||+|
T Consensus 599 ------------------tIr~wDlpt~~lID~~~vd~~------------~~sls~SPngD~LAT~Hvd~---~gIylW 645 (910)
T KOG1539|consen 599 ------------------TIRTWDLPTGTLIDGLLVDSP------------CTSLSFSPNGDFLATVHVDQ---NGIYLW 645 (910)
T ss_pred ------------------cEEEEeccCcceeeeEecCCc------------ceeeEECCCCCEEEEEEecC---ceEEEE
Confidence 399999998875543332211 12357999999999887763 357777
Q ss_pred E
Q 002194 615 S 615 (954)
Q Consensus 615 ~ 615 (954)
.
T Consensus 646 s 646 (910)
T KOG1539|consen 646 S 646 (910)
T ss_pred E
Confidence 5
No 248
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.39 E-value=1.1e-05 Score=86.60 Aligned_cols=202 Identities=16% Similarity=0.084 Sum_probs=113.0
Q ss_pred EEEEEc-CCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCccc
Q 002194 653 SATLYL-PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (954)
Q Consensus 653 ~~~l~~-P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (954)
..|++. |..+.++. -|+|||+|||.+.......|+.. ...... +.. ..+++..+|--. . +..
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~qi~~--------L~~i~~-~l~-~~SILvLDYsLt-~---~~~ 169 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQIEF--------LLNIYK-LLP-EVSILVLDYSLT-S---SDE 169 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHHHHH--------HHHHHH-HcC-CCeEEEEecccc-c---ccc
Confidence 357787 77665544 49999999996543322222210 001111 112 446666555211 1 000
Q ss_pred chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-----CcccEEEEeccCCCCCCCC---CCC
Q 002194 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTP---FGF 803 (954)
Q Consensus 732 ~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~---~~~ 803 (954)
...-++.-+.++.+..++|.+.. ..+.|.++|-|+||.+++.++..-. ..-+.+|+++|..+..... -.+
T Consensus 170 ~~~~yPtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 170 HGHKYPTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCCcCchHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 12224556678889999999442 2368999999999999998875321 1247899999987755211 000
Q ss_pred c--cccch--hhh----cHHHHHh---------cCcccccCC-----------CCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 804 Q--NEDRT--LWE----ATSTYVE---------MSPFMSANK-----------LKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 804 ~--~~~~~--~~~----~~~~~~~---------~sp~~~~~~-----------~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
. +.... .+. -.+.|.. ..|+.+... -+.-++|+.|+++-. .++..++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf----rddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF----RDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc----HHHHHHHH
Confidence 0 00000 000 0011111 111111111 124799999997733 78899999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCCcC
Q 002194 856 NALKGHGA-----LCRLVILPFESHGY 877 (954)
Q Consensus 856 ~~l~~~g~-----~~~~~~~~~~~H~~ 877 (954)
+.+...+. ..+..+.+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986543 36777788888864
No 249
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=7e-06 Score=86.06 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=115.9
Q ss_pred hhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce
Q 002194 100 PEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE 179 (954)
Q Consensus 100 ~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~ 179 (954)
..+..+.+......++|++||..|+....+ +.+++|+.+.. .
T Consensus 136 ~v~~~l~~~g~~k~vaf~~~gs~latgg~d---------------------------------g~lRv~~~Ps~-----~ 177 (398)
T KOG0771|consen 136 NVYQKLVDFGQQKVVAFNGDGSKLATGGTD---------------------------------GTLRVWEWPSM-----L 177 (398)
T ss_pred hHhHHHhhcCcceEEEEcCCCCEeeecccc---------------------------------ceEEEEecCcc-----h
Confidence 334455555455678999999999887665 57888887431 1
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCccccccccceeEecCC---
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNS--- 255 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG--- 255 (954)
+.+....+...+....|||||+.|+++.. ....+|++++|. ...+|+..... .+..+.|+-|+
T Consensus 178 t~l~e~~~~~eV~DL~FS~dgk~lasig~----------d~~~VW~~~~g~~~a~~t~~~k~~---~~~~cRF~~d~~~~ 244 (398)
T KOG0771|consen 178 TILEEIAHHAEVKDLDFSPDGKFLASIGA----------DSARVWSVNTGAALARKTPFSKDE---MFSSCRFSVDNAQE 244 (398)
T ss_pred hhhhhHhhcCccccceeCCCCcEEEEecC----------CceEEEEeccCchhhhcCCcccch---hhhhceecccCCCc
Confidence 12221223457889999999999999752 244555666663 34455433332 26789999777
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC----ceeEcCC
Q 002194 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TVKEIGP 330 (954)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G----~~~~l~~ 330 (954)
.+.+++.. ..+ +...++.+.+ .+ ..++...
T Consensus 245 ~l~laa~~-~~~--------------------------------------------~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 245 TLRLAASQ-FPG--------------------------------------------GGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred eEEEEEec-CCC--------------------------------------------CceeEEEeeeeccccccchhhhhh
Confidence 33333310 000 1111223333 33 3333333
Q ss_pred C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002194 331 P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 331 ~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
. ..+++++.|+|||+++..++++ .+-+++...=+.-.+... .+..-+..+.|+||
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~-----------aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKE-----------AHLGFVTGLTFSPD 335 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCC-------------cEEEEEeceeeeeEeehh-----------hheeeeeeEEEcCC
Confidence 3 6789999999999999998654 666777654332222221 11123467899999
Q ss_pred CCCceE
Q 002194 410 KPSTLY 415 (954)
Q Consensus 410 g~~i~~ 415 (954)
.+.++-
T Consensus 336 sr~~~s 341 (398)
T KOG0771|consen 336 SRYLAS 341 (398)
T ss_pred cCcccc
Confidence 986554
No 250
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.38 E-value=3.4e-06 Score=87.75 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=87.4
Q ss_pred eEEEEEe-CCceeE-cCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 315 QLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 315 ~l~~~~~-~G~~~~-l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
.|-.+|. ++..++ +..++.+++++.|+||..|+..+.++ .+-+.|+.+.+++....-+....
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-------------tl~viDlRt~eI~~~~sA~g~k~--- 386 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-------------TLKVIDLRTKEIRQTFSAEGFKC--- 386 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-------------ceeeeecccccEEEEeecccccc---
Confidence 3666676 554333 33448899999999999998876332 78889999888876655332211
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeec--ccccCceeeccCCce
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKL--DLRYGGISWCDDSLA 469 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~--~~~~~~~~~spDg~~ 469 (954)
........|||||.+++.- +..+.||+|++ .+++.. ++... ...+..++|+|-|+.
T Consensus 387 -----asDwtrvvfSpd~~YvaAG-------------S~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 387 -----ASDWTRVVFSPDGSYVAAG-------------SADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred -----ccccceeEECCCCceeeec-------------cCCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 0123468899999966554 45678999997 555554 44222 224788999999999
Q ss_pred EEEEEeccccceEEE
Q 002194 470 LVYESWYKTRRTRTW 484 (954)
Q Consensus 470 l~~~~~~~~~~~~l~ 484 (954)
++.+..... ..||
T Consensus 446 Llsadk~~~--v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKA--VTLW 458 (459)
T ss_pred hhcccCCcc--eEec
Confidence 988765432 5565
No 251
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=1.7e-05 Score=90.22 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=92.0
Q ss_pred ceEEEEEeCCceeEcCCCccccccccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCc
Q 002194 314 TQLVLVSLDGTVKEIGPPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPI 392 (954)
Q Consensus 314 ~~l~~~~~~G~~~~l~~~~~~~~~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~ 392 (954)
.+||.+.-+.-+..+.....++.++|.| |.++++-.+. ++++.||.+...++...+...
T Consensus 392 VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL-------------D~KvRiWsI~d~~Vv~W~Dl~------- 451 (712)
T KOG0283|consen 392 VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL-------------DGKVRLWSISDKKVVDWNDLR------- 451 (712)
T ss_pred EEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc-------------ccceEEeecCcCeeEeehhhh-------
Confidence 3344433233344445558889999999 7777776663 459999999887766555433
Q ss_pred cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce---EE--ee----cccccCceee
Q 002194 393 AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---IL--HK----LDLRYGGISW 463 (954)
Q Consensus 393 ~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~---~l--~~----~~~~~~~~~~ 463 (954)
.-+.++.|+|||+..++- .-.+..+.|+. .+.+.. .+ .. ....+.++.|
T Consensus 452 ------~lITAvcy~PdGk~avIG-------------t~~G~C~fY~t---~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 452 ------DLITAVCYSPDGKGAVIG-------------TFNGYCRFYDT---EGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ------hhheeEEeccCCceEEEE-------------EeccEEEEEEc---cCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 334678999999976654 12334444442 222111 11 10 0125677777
Q ss_pred ccCC-ceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 464 CDDS-LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 464 spDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.|.. ..|+.++++ .+|.++|.... +....+.+.... ...-.-+|+.||++|+...
T Consensus 510 ~p~~~~~vLVTSnD----SrIRI~d~~~~--~lv~KfKG~~n~----~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 510 FPGDPDEVLVTSND----SRIRIYDGRDK--DLVHKFKGFRNT----SSQISASFSSDGKHIVSAS 565 (712)
T ss_pred cCCCCCeEEEecCC----CceEEEeccch--hhhhhhcccccC----CcceeeeEccCCCEEEEee
Confidence 7643 345555544 45677776442 222222221111 0111257899999999987
No 252
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=8.1e-05 Score=75.04 Aligned_cols=260 Identities=16% Similarity=0.079 Sum_probs=143.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
......||+-|..||..- .++.|.++|..+-..-++....-.. +.+++||+||+.|+.++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc---------~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS~------ 85 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGC---------ANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSSR------ 85 (405)
T ss_pred ccceEEeccCcceeeeec---------cCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeecC------
Confidence 356789999999999844 2456666676664443333322222 779999999999997611
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
...+-.+|+ .|. .+++.-+..+....|.|-.+..+
T Consensus 86 -------------------------------------------D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 86 -------------------------------------------DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred -------------------------------------------CceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 123556787 774 45554446677788888554444
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+...-+. .-++.++.....+.|...+..+. + ...+...|.+-|+.|+.-
T Consensus 123 va~~~~~------------sp~vi~~s~~~h~~Lp~d~d~dl-----n---~sas~~~fdr~g~yIitG----------- 171 (405)
T KOG1273|consen 123 VATIMEE------------SPVVIDFSDPKHSVLPKDDDGDL-----N---SSASHGVFDRRGKYIITG----------- 171 (405)
T ss_pred EEEEecC------------CcEEEEecCCceeeccCCCcccc-----c---cccccccccCCCCEEEEe-----------
Confidence 4332111 23344554433333333221110 0 001112477778866554
Q ss_pred cccCCCeEEEEecCCCCCCCc---eEEeecccccCceeeccCCceEEEEEeccccceEEEEEc-C--CCCCCCcEEEecC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-P--GSKDVAPRILFDR 501 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~---~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d-~--~~~~~~~~~l~~~ 501 (954)
...+.+.++++ .+-+. -+++. -..+.++-++-.|+.|++...+.. .|.|-+. + .+.++++... .
T Consensus 172 --tsKGkllv~~a---~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRv--IR~ye~~di~~~~r~~e~e~~--~ 241 (405)
T KOG1273|consen 172 --TSKGKLLVYDA---ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRV--IRTYEISDIDDEGRDGEVEPE--H 241 (405)
T ss_pred --cCcceEEEEec---chheeeeeeeech-heeeeEEEEeccCcEEEEecCCce--EEEEehhhhcccCccCCcChh--H
Confidence 34567888885 32222 11121 235677889999999988765443 4444432 1 1111222211 0
Q ss_pred CCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCc
Q 002194 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (954)
Q Consensus 502 ~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 572 (954)
...++-....-...-||.||.++..... ..-.||+|....|...++..+..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 1111111000011567889998877652 23359999999999888877664
No 253
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.34 E-value=2.5e-06 Score=92.49 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=63.4
Q ss_pred HHhcCcccccCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCccc--HHHHHHHHHHH
Q 002194 817 YVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES--IMHVLWETDRW 893 (954)
Q Consensus 817 ~~~~sp~~~~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~f 893 (954)
+...++...+.++. +|+|++||..|..|| ..++..++.+.+.. +.+..++++++|....... ....+..+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 55566777777777 699999999999999 99999999998875 5788889999998864232 24788899999
Q ss_pred HHHhc
Q 002194 894 LQKYC 898 (954)
Q Consensus 894 l~~~l 898 (954)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99875
No 254
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.32 E-value=3.8e-06 Score=81.32 Aligned_cols=221 Identities=18% Similarity=0.162 Sum_probs=127.0
Q ss_pred EEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC
Q 002194 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (954)
Q Consensus 642 ~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (954)
..++-.||..+.+..| |.. + +.+-.+++-|++. ....++..++...+.+||.|+. +
T Consensus 8 ~~l~~~DG~~l~~~~~-pA~---~---~~~g~~~va~a~G--------------v~~~fYRrfA~~a~~~Gf~Vlt---~ 63 (281)
T COG4757 8 AHLPAPDGYSLPGQRF-PAD---G---KASGRLVVAGATG--------------VGQYFYRRFAAAAAKAGFEVLT---F 63 (281)
T ss_pred cccccCCCccCccccc-cCC---C---CCCCcEEecccCC--------------cchhHhHHHHHHhhccCceEEE---E
Confidence 5577789999999987 432 1 1332333333310 1112234567777889999999 4
Q ss_pred CCCCCCCcccc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEE-EEeccC-
Q 002194 722 PIIGEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG-IARSGA- 793 (954)
Q Consensus 722 ~~~G~G~~~~~------~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~-v~~~~~- 793 (954)
+++|.|++... -.+..-...|+.++++++.+.. ...+...+|||+||.+...+. +++ ++.+. |..++.
T Consensus 64 dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gag 139 (281)
T COG4757 64 DYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAG 139 (281)
T ss_pred ecccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCc-ccceeeEeccccc
Confidence 55565655331 3445667899999999998853 224689999999998766544 443 33332 222211
Q ss_pred -CCC---------------CCCCCCCccc-------------cchh------hhcHHHHHhcCcc-----cccCCCCCCE
Q 002194 794 -YNR---------------TLTPFGFQNE-------------DRTL------WEATSTYVEMSPF-----MSANKLKKPI 833 (954)
Q Consensus 794 -~~~---------------~~~~~~~~~~-------------~~~~------~~~~~~~~~~sp~-----~~~~~~~~P~ 833 (954)
..+ ......+... -.+. |.....|.-.+|- ...+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 110 0000000000 0011 1111111111221 1235678999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC----CCcCCCcccHHHHHHHHHHHH
Q 002194 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE----SHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 834 Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl 894 (954)
+.+...+|+-+| +.....+...... .+.++..++.+ ||.-...+..+...+++++||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~n--Apl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRN--APLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhc--CcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 7766666666554 46677777754 887544554577788888886
No 255
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.31 E-value=0.00035 Score=72.70 Aligned_cols=225 Identities=16% Similarity=0.128 Sum_probs=127.2
Q ss_pred cccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
....+..+| ++.-++|.++ + ..-++++|..+|+..+....+. ..+ ..-..||+||++||.+
T Consensus 6 RgH~~a~~p~~~~avafaRR-P-------G~~~~v~D~~~g~~~~~~~a~~gRHF---yGHg~fs~dG~~LytT------ 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR-P-------GTFALVFDCRTGQLLQRLWAPPGRHF---YGHGVFSPDGRLLYTT------ 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeC-C-------CcEEEEEEcCCCceeeEEcCCCCCEE---ecCEEEcCCCCEEEEe------
Confidence 345678899 5666666653 2 5678899999988765544443 333 3467899999999977
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcC---CC-ccccccccCCCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG---PP-AVYTSLDPSPDE 343 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~---~~-~~~~~~~~SpDG 343 (954)
+++ .+ .+.+.|-++|.....+++. .. -..-.+.+.|||
T Consensus 69 ---------------End-----------------~~------~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 69 ---------------END-----------------YE------TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred ---------------ccc-----------------cC------CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 111 00 0456677888843333333 22 233467899999
Q ss_pred cEEEEEeecC---Ccc--cccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEE
Q 002194 344 KYILISSIHR---PYS--FIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 344 k~l~~~s~~~---~~~--~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
+.|++....- ++. ..+........+.+.|..++++ .+..-.+. -.....|.+++.+||. +++..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~---------~~~lSiRHLa~~~~G~-V~~a~ 180 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD---------LHQLSIRHLAVDGDGT-VAFAM 180 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc---------ccccceeeEEecCCCc-EEEEE
Confidence 9998875321 111 1111122233566666555443 33221110 1123468899999986 33332
Q ss_pred EeccCCCccccccCCCeEEEEecCCCCCCCceEEee-------cccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 418 ETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-------LDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-------~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.. .+... ...-.|.+.. .++..+.+.. ....+.++++++||+.|+.++...+ .+.++|..+
T Consensus 181 Q~--qg~~~---~~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~t 248 (305)
T PF07433_consen 181 QY--QGDPG---DAPPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAAT 248 (305)
T ss_pred ec--CCCCC---ccCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCC
Confidence 22 22110 1122455554 2333443322 2345678999999999999887764 456667777
Q ss_pred C
Q 002194 491 K 491 (954)
Q Consensus 491 ~ 491 (954)
+
T Consensus 249 g 249 (305)
T PF07433_consen 249 G 249 (305)
T ss_pred C
Confidence 5
No 256
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.30 E-value=0.00022 Score=74.93 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=84.5
Q ss_pred cceEEEEEe-CCceeEcCCCccccccccC-CCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~~~~~~~~~S-pDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
..+|++++. ++..+.+..+. ..+..+. +||+.++... . .+.++|.++++.+.+...+... .
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~-~--------------~~~~~d~~~g~~~~~~~~~~~~-~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADS-G--------------GIAVVDPDTGKVTVLADLPDGG-V 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEET-T--------------CEEEEETTTTEEEEEEEEETTC-S
T ss_pred CCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEc-C--------------ceEEEecCCCcEEEEeeccCCC-c
Confidence 356999999 66555444433 4455666 6765544432 1 5566788888877776642110 0
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
.......+++.|||+ +++. +........ ...+.||.++. + ++.+.+...-...++++|+|||+.|
T Consensus 84 ------~~~~~ND~~vd~~G~-ly~t-~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 84 ------PFNRPNDVAVDPDGN-LYVT-DSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ------CTEEEEEEEE-TTS--EEEE-EECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred ------ccCCCceEEEcCCCC-EEEE-ecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhe
Confidence 113446789999998 3333 222111100 01167999984 3 5555555555556789999999998
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+++.... .+||+++.+..
T Consensus 149 yv~ds~~---~~i~~~~~~~~ 166 (246)
T PF08450_consen 149 YVADSFN---GRIWRFDLDAD 166 (246)
T ss_dssp EEEETTT---TEEEEEEEETT
T ss_pred eeccccc---ceeEEEecccc
Confidence 8764433 46888888643
No 257
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.29 E-value=1.5e-05 Score=76.42 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=105.9
Q ss_pred CCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
|.......+..|+++|+.|+. .++.-| +.......+...|+.+.+++..++-. .+++.|+|.|+|+-+.-.+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvG---vdsl~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVG---VDSLRY---FWSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEE---echHHH---HhhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 444556778899999999998 333222 22233446778999999998888743 3699999999999988888
Q ss_pred HHhCCC----cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCC-CEEEEEeCCCCCCCCchHHH
Q 002194 777 LAHAPH----LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGEEDNNSGTLTMQS 851 (954)
Q Consensus 777 a~~~p~----~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~-P~Lii~G~~D~~v~~~~~~~ 851 (954)
..+-|. +++.+++++|.... .+.+......-+.... ..+.+...+.++.. |++.|.|++|.-..|+.
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~---dFeihv~~wlg~~~~~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp~--- 157 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTA---DFEIHVSGWLGMGGDD--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCPS--- 157 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcc---eEEEEhhhhcCCCCCc--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCcc---
Confidence 887763 57777777764221 1110000000000000 12345556666764 99999998765432111
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
++. ..++.+..|| ||.|. .+...+.+.|++-++
T Consensus 158 ------l~~--~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 158 ------LRQ--PGVEVIALPG-GHHFD--GDYDALAKRILDALK 190 (192)
T ss_pred ------ccC--CCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHh
Confidence 222 3468888998 77663 445566666666554
No 258
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.2e-06 Score=81.85 Aligned_cols=247 Identities=13% Similarity=0.151 Sum_probs=137.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeeccc-CCCccc---cccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQ-SPDIYL---NAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~~---~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.+....|||||++|+..+ -+|-..+| +-.+|+.++-.. .....+ ...+--+.||-|...++..+
T Consensus 215 h~EcA~FSPDgqyLvsgS-------vDGFiEVW--ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--- 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS-------VDGFIEVW--NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--- 282 (508)
T ss_pred chhheeeCCCCceEeecc-------ccceeeee--hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---
Confidence 566789999999998744 34455555 445676654221 111100 00122345666666655330
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCc-eeEcCCC--ccccccccCCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGT-VKEIGPP--AVYTSLDPSPD 342 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~-~~~l~~~--~~~~~~~~SpD 342 (954)
.| +.-.+|++. +|. .+++... .++..+.||.|
T Consensus 283 -------------------------------------qD-------GkIKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 283 -------------------------------------QD-------GKIKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred -------------------------------------cC-------CcEEEEEEe-cchHHHHhhhhhccCeeEEEEccC
Confidence 01 223344444 663 4444422 77889999999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
+..|+..+. +..+.+.-+..++ .++.. ++...+....|++||..|+-.
T Consensus 318 ~SqiLS~sf-------------D~tvRiHGlKSGK~LKEfr-------------GHsSyvn~a~ft~dG~~iisa----- 366 (508)
T KOG0275|consen 318 NSQILSASF-------------DQTVRIHGLKSGKCLKEFR-------------GHSSYVNEATFTDDGHHIISA----- 366 (508)
T ss_pred cchhhcccc-------------cceEEEeccccchhHHHhc-------------CccccccceEEcCCCCeEEEe-----
Confidence 999988773 3356666555332 22222 222345667899999987665
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCc-eEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 498 (954)
+..+.+-+|+. .+.+- ... ...+..+.++-.-|..-.-+...++. ..+|++++.+. -.+..
T Consensus 367 --------SsDgtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---ntv~imn~qGQ--vVrsf 430 (508)
T KOG0275|consen 367 --------SSDGTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---NTVYIMNMQGQ--VVRSF 430 (508)
T ss_pred --------cCCccEEEecC---cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC---CeEEEEeccce--EEeee
Confidence 44556777774 22221 111 22455566666666654333333443 46999999873 12222
Q ss_pred ecCCC--CCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEE
Q 002194 499 FDRSS--EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (954)
Q Consensus 499 ~~~~~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 567 (954)
..+.. ++... ...||.|.|++... ....||.+...+|+.++.
T Consensus 431 sSGkREgGdFi~------~~lSpkGewiYcig---------------------ED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 431 SSGKREGGDFIN------AILSPKGEWIYCIG---------------------EDGVLYCFSVLSGKLERT 474 (508)
T ss_pred ccCCccCCceEE------EEecCCCcEEEEEc---------------------cCcEEEEEEeecCceeee
Confidence 22221 12111 35689998887665 123588898888877654
No 259
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.28 E-value=5e-05 Score=84.93 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=114.6
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
++||++|+.|+... +..|-.+|+.++... +....... ...+..++.+||+++|+.+.
T Consensus 25 ~~~s~nG~~L~t~~----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a~----------- 81 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTAS----------- 81 (775)
T ss_pred eeECCCCCEEEEec----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEee-----------
Confidence 89999999877654 567888999888763 33222211 11256889999999998771
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc--CCC-ccccccccCCCCcEEEEE
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI--GPP-AVYTSLDPSPDEKYILIS 349 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l--~~~-~~~~~~~~SpDGk~l~~~ 349 (954)
....|-.+.+ +|+..+. ..+ +.+...+|+|-|-.++..
T Consensus 82 --------------------------------------rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtg 123 (775)
T KOG0319|consen 82 --------------------------------------RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATG 123 (775)
T ss_pred --------------------------------------ccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEec
Confidence 1122444556 6643222 112 566678899999444444
Q ss_pred eecCCcccccccCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002194 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (954)
Q Consensus 350 s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (954)
.. ++.+.+||..++... .+..++ +-+.++.|.|+-.+.+....
T Consensus 124 ga-------------D~~v~VWdi~~~~~th~fkG~g-------------GvVssl~F~~~~~~~lL~sg---------- 167 (775)
T KOG0319|consen 124 GA-------------DGRVKVWDIKNGYCTHSFKGHG-------------GVVSSLLFHPHWNRWLLASG---------- 167 (775)
T ss_pred cc-------------cceEEEEEeeCCEEEEEecCCC-------------ceEEEEEeCCccchhheeec----------
Confidence 32 348899999976543 333332 22456788888776333211
Q ss_pred ccCCCeEEEEecCCCCCCC--ceEEeecccccCceeeccCCceEEEEEecc
Q 002194 429 VTPRDIIYTQQAEPVQGEG--PEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 429 ~~~~~~l~~~~~~~~~g~~--~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.....+++|++ ..+. ...+..+...+.++++++|+..+++.+.++
T Consensus 168 -~~D~~v~vwnl---~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 168 -ATDGTVRVWNL---NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred -CCCceEEEEEc---ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 23457888886 3222 223355666788999999999999987654
No 260
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.27 E-value=3.1e-05 Score=83.44 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=60.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+.+..++|||||++||.++.+. -+.|++.++.+..-+.. +..+|..-+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-------------fLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-------------FLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-------------eEEEeeccHHHHHHHHH------------hhccceEEEEEcCCcc
Confidence 5678899999999999999543 67788877544332222 2224445689999999
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe---ecccccCceeecc
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCD 465 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~---~~~~~~~~~~~sp 465 (954)
.|+.- ++++.|-+|.+ . +.+.+. .+...+..++|.|
T Consensus 346 yIvtG-------------GEDDLVtVwSf---~--erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTG-------------GEDDLVTVWSF---E--ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEec-------------CCcceEEEEEe---c--cceEEEeccccccceeeEeecc
Confidence 87664 45667777775 2 233342 3444567778866
No 261
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.27 E-value=4.2e-05 Score=76.74 Aligned_cols=198 Identities=14% Similarity=0.215 Sum_probs=119.3
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC----Cceeec---------------ccCCCccccccccce
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKARPL---------------FQSPDIYLNAIFDNF 249 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~l---------------t~~~~~~~~~~~~~~ 249 (954)
..+...+|||||..+|. ++-...|-++|++- .+.+++ .++-+. +..+
T Consensus 113 ~~cR~aafs~DG~lvAT---------GsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-----vn~l 178 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVAT---------GSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-----VNDL 178 (430)
T ss_pred cceeeeeeCCCCcEEEc---------cCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-----ccce
Confidence 35778899999998887 44567788888761 111111 111111 5577
Q ss_pred eEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-----c
Q 002194 250 VWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-----T 324 (954)
Q Consensus 250 ~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-----~ 324 (954)
.|.|-..+|+..+ . ...|-+.|... .
T Consensus 179 ~FHPre~ILiS~s---------------------r----------------------------D~tvKlFDfsK~saKrA 209 (430)
T KOG0640|consen 179 DFHPRETILISGS---------------------R----------------------------DNTVKLFDFSKTSAKRA 209 (430)
T ss_pred eecchhheEEecc---------------------C----------------------------CCeEEEEecccHHHHHH
Confidence 7888887777541 1 12233444421 2
Q ss_pred eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002194 325 VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 325 ~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
.+.+.+...+.+++|.|-|.+|+....+. .+.+||+++-+.-.-.. |.. .+..++..+
T Consensus 210 ~K~~qd~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V 267 (430)
T KOG0640|consen 210 FKVFQDTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQV 267 (430)
T ss_pred HHHhhccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecC-ccc--------ccccceeEE
Confidence 22333337788999999999999988543 78899999766433222 211 233556778
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe--ecccccCceeeccCCceEEEEEeccccceE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~ 482 (954)
.+|+.|+ +|.+. +..+.|-+||= ..+.-.+.+. .+...+-+..|+.+|++|+.+..+.. ..
T Consensus 268 ~Ys~t~~--lYvTa-----------SkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~--vk 330 (430)
T KOG0640|consen 268 RYSSTGS--LYVTA-----------SKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST--VK 330 (430)
T ss_pred EecCCcc--EEEEe-----------ccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce--ee
Confidence 9999997 34322 33557778871 2222223331 22334667899999999998765543 56
Q ss_pred EEEEcC
Q 002194 483 TWVISP 488 (954)
Q Consensus 483 l~~~d~ 488 (954)
||.+..
T Consensus 331 LWEi~t 336 (430)
T KOG0640|consen 331 LWEIST 336 (430)
T ss_pred eeeecC
Confidence 666653
No 262
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.27 E-value=1.8e-05 Score=78.53 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhc
Q 002194 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (954)
Q Consensus 827 ~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (954)
..+.+|+.++.|++|..|. .++...+.+.. +...++.+|+| ||.+. ..+. +++++++.+++
T Consensus 173 ~pl~~pi~~~~G~~D~~vs--~~~~~~W~~~t---~~~f~l~~fdG-gHFfl-~~~~----~~v~~~i~~~l 233 (244)
T COG3208 173 APLACPIHAFGGEKDHEVS--RDELGAWREHT---KGDFTLRVFDG-GHFFL-NQQR----EEVLARLEQHL 233 (244)
T ss_pred CCcCcceEEeccCcchhcc--HHHHHHHHHhh---cCCceEEEecC-cceeh-hhhH----HHHHHHHHHHh
Confidence 3578999999999999987 55555555544 44589999998 99885 2333 34455555554
No 263
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.26 E-value=7.2e-06 Score=86.98 Aligned_cols=108 Identities=11% Similarity=-0.074 Sum_probs=72.2
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAA 746 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~a 746 (954)
.|++|++||..... ...+.......++. .+|.|+..+.. +.+..... ........+++...
T Consensus 36 ~p~vilIHG~~~~~-------------~~~~~~~l~~~ll~~~~~nVi~vD~~---~~~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSSG-------------EESWISDLRKAYLSRGDYNVIVVDWG---RGANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCCC-------------CCcHHHHHHHHHHhcCCCEEEEEECc---cccccChHHHHHhHHHHHHHHHHH
Confidence 58899999953110 01111223333444 68999995553 32221111 11123345677888
Q ss_pred HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 747 v~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+++|.+...++.+++.++|||+||.+|..++.+.|++++.++.+.|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88888775567789999999999999999999999999999999875
No 264
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.25 E-value=4.8e-05 Score=79.33 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=47.2
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
..+...+|+||+..+.+.+ ..+.++++|+..|............ +..++|.|-++.|+..
T Consensus 124 ~diydL~Ws~d~~~l~s~s---------~dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGS---------VDNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASK 183 (434)
T ss_pred cchhhhhccCCCceeeeee---------ccceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhh
Confidence 4788899999999999965 3667888888888876665544433 6789999999988865
No 265
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.24 E-value=0.00092 Score=75.20 Aligned_cols=364 Identities=13% Similarity=0.107 Sum_probs=197.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccccc--------ceeeeeeecCC--C---CCCcceeeEeceEEEEccCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPE--------EKLAGLRIDGK--C---NTRSRMSFYTGIGIHQLFPDGKL 176 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~---~~~~~~~~~~~l~l~~~~~~g~~ 176 (954)
.+.+++|++|+..+++++++..-.+|++..-. ..+.+..+-.+ + ....+.+..+.+.+|+.++ +..
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es-~~~ 272 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES-GKC 272 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-chh
Confidence 57899999999999999988555566553211 11122222211 1 1112223335667777542 211
Q ss_pred CceeeeecCCCCCcccce-eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee-ecccCCCccccccccce-eEec
Q 002194 177 GQEIEIQGFPDGAKLNFV-TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNF-VWVN 253 (954)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~-~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~-~wsp 253 (954)
...++ .++.....+. ...-+++.++.+. ..+|+++|.++.+.. ++....+. +.++ -|-|
T Consensus 273 ~~~~~---~~~~~e~~~~~~~~~~~~~l~vta----------eQnl~l~d~~~l~i~k~ivG~ndE-----I~Dm~~lG~ 334 (775)
T KOG0319|consen 273 VYKQR---QSDSEEIDHLLAIESMSQLLLVTA----------EQNLFLYDEDELTIVKQIVGYNDE-----ILDMKFLGP 334 (775)
T ss_pred hhhhc---cCCchhhhcceeccccCceEEEEc----------cceEEEEEccccEEehhhcCCchh-----heeeeecCC
Confidence 11111 1111222232 3344666666654 578999998876653 33222221 4444 4568
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-
Q 002194 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP- 331 (954)
Q Consensus 254 DG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~- 331 (954)
+.+.+++++ | ..+|-++++ +-....+...
T Consensus 335 e~~~laVAT---------------------N----------------------------s~~lr~y~~~~~~c~ii~GH~ 365 (775)
T KOG0319|consen 335 EESHLAVAT---------------------N----------------------------SPELRLYTLPTSYCQIIPGHT 365 (775)
T ss_pred ccceEEEEe---------------------C----------------------------CCceEEEecCCCceEEEeCch
Confidence 888888872 1 123445576 4344444443
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+.+++...+|-+|+..+.+ +.+.+|.++.+..+.+... ..+++...+..++.+.-|.
T Consensus 366 e~vlSL~~~~~g~llat~sKD-------------~svilWr~~~~~~~~~~~a--------~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKD-------------KSVILWRLNNNCSKSLCVA--------QANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred hheeeeeecccCcEEEEecCC-------------ceEEEEEecCCcchhhhhh--------hhcccccccceeeecccCc
Confidence 566667655578666666533 3788887753332221110 0112223344566655554
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCC--CCCCceEE------eecccccCceeeccCCceEEEEEeccccceEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPV--QGEGPEIL------HKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~g~~~~~l------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
.++.. ++....+-+|++ |. +...+..+ ..++-+++.++.+|+.+.|+..+.+++ ..|
T Consensus 425 sffvs------------vS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt--aKi 489 (775)
T KOG0319|consen 425 SFFVS------------VSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT--AKI 489 (775)
T ss_pred cEEEE------------ecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc--eee
Confidence 43333 133445666665 22 11122222 235778899999999999999888876 789
Q ss_pred EEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCC
Q 002194 484 WVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGS 563 (954)
Q Consensus 484 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 563 (954)
|.++ +. .......++...+.. ++|+|..+.++-.+. ...+.+|.+.+.+
T Consensus 490 W~le-~~---~l~~vLsGH~RGvw~------V~Fs~~dq~laT~Sg---------------------D~TvKIW~is~fS 538 (775)
T KOG0319|consen 490 WDLE-QL---RLLGVLSGHTRGVWC------VSFSKNDQLLATCSG---------------------DKTVKIWSISTFS 538 (775)
T ss_pred eccc-Cc---eEEEEeeCCccceEE------EEeccccceeEeccC---------------------CceEEEEEeccce
Confidence 9988 22 334445555555555 889998887776651 1248889888877
Q ss_pred eEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 564 KERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 564 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
...-..+... ++. ..+|-.+|..++-..+ -+-+-+|++.+++...
T Consensus 539 ClkT~eGH~~-------aVl----ra~F~~~~~qliS~~a----dGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 539 CLKTFEGHTS-------AVL----RASFIRNGKQLISAGA----DGLIKLWNIKTNECEM 583 (775)
T ss_pred eeeeecCccc-------eeE----eeeeeeCCcEEEeccC----CCcEEEEeccchhhhh
Confidence 6554443211 111 1345555666553222 3457777776665433
No 266
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.23 E-value=0.001 Score=71.52 Aligned_cols=142 Identities=10% Similarity=0.156 Sum_probs=86.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
.....++..|+...++..+.+ +.+.+|+-..-+...+...+ .....|.|-|
T Consensus 369 delwgla~hps~~q~~T~gqd-------------k~v~lW~~~k~~wt~~~~d~---------------~~~~~fhpsg- 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQD-------------KHVRLWNDHKLEWTKIIEDP---------------AECADFHPSG- 419 (626)
T ss_pred cceeeEEcCCChhheeeccCc-------------ceEEEccCCceeEEEEecCc---------------eeEeeccCcc-
Confidence 455567788887777766533 37888982222333444322 2356788988
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.++.- ...++.+++|. ++.....+......+.-++|||||..|+..+.++- ..||+++.++.
T Consensus 420 ~va~G-------------t~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~--iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 420 VVAVG-------------TATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH--IYIYRVSANGR 481 (626)
T ss_pred eEEEe-------------eccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe--EEEEEECCCCc
Confidence 45544 23557888885 44444444444666778999999999999875543 67788887763
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.-..+-.-....+.. +-||+|++++.-..
T Consensus 482 --~y~r~~k~~gs~ith------LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 482 --KYSRVGKCSGSPITH------LDWSSDSQFLVSNS 510 (626)
T ss_pred --EEEEeeeecCceeEE------eeecCCCceEEecc
Confidence 212211111111111 67999999887655
No 267
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.23 E-value=4.2e-05 Score=77.36 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred eEEEEEe-CCceeEcCCC-------ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccC
Q 002194 315 QLVLVSL-DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDL 384 (954)
Q Consensus 315 ~l~~~~~-~G~~~~l~~~-------~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~ 384 (954)
-|.++|. +|+.+--... ....++.|||||..|...-+ ..|.++|+. |......+..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--------------rcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--------------RCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--------------ceEEEeeccCCCCCCcchhhh
Confidence 3778888 8876644322 22347899999999876542 278888874 3332222221
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeec
Q 002194 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWC 464 (954)
Q Consensus 385 ~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~s 464 (954)
..... +..+-..-++|||-....+.+ ++. ..+-.||..+ +.+....|..+.+.+..+.|.
T Consensus 200 ~~~k~------gq~giisc~a~sP~~~~~~a~-----gsY-----~q~~giy~~~----~~~pl~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 200 TKGKF------GQKGIISCFAFSPMDSKTLAV-----GSY-----GQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWC 259 (406)
T ss_pred hcccc------cccceeeeeeccCCCCcceee-----ecc-----cceeeeEecC----CCCceeeecccCCCeeeEEec
Confidence 11000 000112347888866544443 000 1122344443 333345556677788999999
Q ss_pred cCCceEEEEEecc
Q 002194 465 DDSLALVYESWYK 477 (954)
Q Consensus 465 pDg~~l~~~~~~~ 477 (954)
+||..|+..+..+
T Consensus 260 edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 260 EDGNKLFSGARKD 272 (406)
T ss_pred cCcCeecccccCC
Confidence 9999888776544
No 268
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.21 E-value=0.0004 Score=78.04 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=122.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
..+....+|.|...|+- . .+..|-+|+.++.+..+...... +-...|-|.++.|+...
T Consensus 374 ~dVRsl~vS~d~~~~~S-g---------a~~SikiWn~~t~kciRTi~~~y------~l~~~Fvpgd~~Iv~G~------ 431 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLAS-G---------AGESIKIWNRDTLKCIRTITCGY------ILASKFVPGDRYIVLGT------ 431 (888)
T ss_pred hheeEEEeecCceeeee-c---------CCCcEEEEEccCcceeEEecccc------EEEEEecCCCceEEEec------
Confidence 37888999977654443 2 24566666777666543322221 34667889888888651
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCcee-EcCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~-~l~~~-~~~~~~~~SpDGk~ 345 (954)
..+.|-++|+ +.... .+... +.+.+++.+||++.
T Consensus 432 -------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 432 -------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 2345667777 55322 22223 77889999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEecc------CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD------GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~------g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~ 419 (954)
.+..+.+. .+.+||.. |.+.+.|.-.. .... .....+..+++||||+.+++..
T Consensus 469 ~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~-~rtL-----el~ddvL~v~~Spdgk~LaVsL-- 527 (888)
T KOG0306|consen 469 FVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKH-TRTL-----ELEDDVLCVSVSPDGKLLAVSL-- 527 (888)
T ss_pred eEEecCCc-------------EEEEEeEEEEeccCcccceeeeecc-ceEE-----eccccEEEEEEcCCCcEEEEEe--
Confidence 99988543 66677653 22222222111 0000 0012345689999999887751
Q ss_pred ccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
. +..-+||.+| +=.--..|.++...+..+..|||++.|+..+-+++ ..+|-+|-..
T Consensus 528 L---------dnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKn--VKiWGLdFGD 583 (888)
T KOG0306|consen 528 L---------DNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--VKIWGLDFGD 583 (888)
T ss_pred c---------cCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCc--eEEeccccch
Confidence 1 2233555554 11122345677788889999999999998876665 7888887655
No 269
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.21 E-value=2.2e-05 Score=83.56 Aligned_cols=235 Identities=14% Similarity=0.054 Sum_probs=140.1
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeee-ecC
Q 002194 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI-QGF 185 (954)
Q Consensus 107 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~l-t~~ 185 (954)
.....++..++|||+.|+.-... ..|-|||+.. +..+| ..+
T Consensus 464 rdnyiRSckL~pdgrtLivGGea---------------------------------stlsiWDLAa-----pTprikael 505 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEA---------------------------------STLSIWDLAA-----PTPRIKAEL 505 (705)
T ss_pred cccceeeeEecCCCceEEecccc---------------------------------ceeeeeeccC-----CCcchhhhc
Confidence 33457788899999999876543 4788999954 11122 123
Q ss_pred CCC-CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 186 PDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 186 ~~~-~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
+.. ......+.|||.+ |+|..- .+ .+|-+||+.... .|++-....+ ..-+..|+||..|+....
T Consensus 506 tssapaCyALa~spDak-vcFscc------sd--GnI~vwDLhnq~~VrqfqGhtDG-----ascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAK-VCFSCC------SD--GNIAVWDLHNQTLVRQFQGHTDG-----ASCIDISKDGTKLWTGGL 571 (705)
T ss_pred CCcchhhhhhhcCCccc-eeeeec------cC--CcEEEEEcccceeeecccCCCCC-----ceeEEecCCCceeecCCC
Confidence 322 2677788999986 777654 22 455555665543 3444333332 567889999999985410
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCC
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSP 341 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~Sp 341 (954)
...+..+|+ +|. +.+-.-...+.++..+|
T Consensus 572 -------------------------------------------------DntvRcWDlregrqlqqhdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 572 -------------------------------------------------DNTVRCWDLREGRQLQQHDFSSQIFSLGYCP 602 (705)
T ss_pred -------------------------------------------------ccceeehhhhhhhhhhhhhhhhhheecccCC
Confidence 112445566 552 21111116678889999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
.|.||++..... +++|....+.+..+|..++. =+-++.|++-|+..+-.
T Consensus 603 ~~dWlavGMens-------------~vevlh~skp~kyqlhlheS-------------cVLSlKFa~cGkwfvSt----- 651 (705)
T KOG0639|consen 603 TGDWLAVGMENS-------------NVEVLHTSKPEKYQLHLHES-------------CVLSLKFAYCGKWFVST----- 651 (705)
T ss_pred CccceeeecccC-------------cEEEEecCCccceeeccccc-------------EEEEEEecccCceeeec-----
Confidence 999999987332 78888877777666665431 23578899999854433
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
+..+.+-.|.. | -|..+-+. +....+-+...|-|.++||..+.++. ..+|.+
T Consensus 652 --------GkDnlLnawrt-P-yGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkk--ATVYeV 703 (705)
T KOG0639|consen 652 --------GKDNLLNAWRT-P-YGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKK--ATVYEV 703 (705)
T ss_pred --------CchhhhhhccC-c-cccceeec-cccCcceeeeeccCceEEEecCCCcc--eEEEEE
Confidence 22333333432 1 12222222 22334556677889999998876542 446543
No 270
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.21 E-value=1.5e-05 Score=77.46 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=72.3
Q ss_pred HHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHH-HhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCc
Q 002194 745 AAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLL-AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSP 822 (954)
Q Consensus 745 ~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 822 (954)
+.++.|.+. ..+| +.+.++|||.|+.+++.++ .+...+++++++++|+..... ...... .....+
T Consensus 41 ~W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~~----------~~~f~~ 107 (171)
T PF06821_consen 41 EWVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPPE----------LDGFTP 107 (171)
T ss_dssp HHHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTCG----------GCCCTT
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhhh----------cccccc
Confidence 444445444 2233 4699999999999999999 667788999999999743100 000000 000011
Q ss_pred ccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 823 ~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
. ....+..|.+++.+++|+.|| ++.+.++.+++. .+++.++++||...
T Consensus 108 ~-p~~~l~~~~~viaS~nDp~vp--~~~a~~~A~~l~-----a~~~~~~~~GHf~~ 155 (171)
T PF06821_consen 108 L-PRDPLPFPSIVIASDNDPYVP--FERAQRLAQRLG-----AELIILGGGGHFNA 155 (171)
T ss_dssp S-HCCHHHCCEEEEEETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSSG
T ss_pred C-cccccCCCeEEEEcCCCCccC--HHHHHHHHHHcC-----CCeEECCCCCCccc
Confidence 1 111234667999999999999 999999999884 48899999999763
No 271
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.20 E-value=0.00015 Score=75.68 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=77.7
Q ss_pred eceEEEEccCCCCCC---ceeeeecCCCC-CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEE------CCC----
Q 002194 163 TGIGIHQLFPDGKLG---QEIEIQGFPDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD------VDT---- 228 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~---~~~~lt~~~~~-~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d------~~~---- 228 (954)
.+|.+|.++.+-..+ ...-+..+..+ ..++.++|+|+|..||-.. +++..-||... .++
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------DGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------CCceEEEEEecCcCCccccchhhh
Confidence 466666664221111 12223333332 3788999999999998743 34455666554 122
Q ss_pred -Cc---eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccc
Q 002194 229 -GK---ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYD 304 (954)
Q Consensus 229 -g~---~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d 304 (954)
.+ .+++...... .+..++|+||+..+++.+
T Consensus 109 ~ke~w~v~k~lr~h~~----diydL~Ws~d~~~l~s~s------------------------------------------ 142 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRD----DIYDLAWSPDSNFLVSGS------------------------------------------ 142 (434)
T ss_pred CccceEEEEEeccccc----chhhhhccCCCceeeeee------------------------------------------
Confidence 10 0111111111 155889999999888761
Q ss_pred cccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcEEEEEeecC
Q 002194 305 EDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHR 353 (954)
Q Consensus 305 ~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~ 353 (954)
....++.+|+ .|....+... ..+..++|.|-+++|+..+.++
T Consensus 143 -------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 143 -------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred -------ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 1234667788 7765555444 6778999999999999877554
No 272
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.19 E-value=0.00017 Score=73.16 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=61.9
Q ss_pred ccccccccCCC-CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpD-Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+.-++|||- -+.++..+. .+.+-|+.-++..+-.+.. +..+|+..+.|-+||
T Consensus 208 giisc~a~sP~~~~~~a~gsY-------------~q~~giy~~~~~~pl~llg------------gh~gGvThL~~~edG 262 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSY-------------GQRVGIYNDDGRRPLQLLG------------GHGGGVTHLQWCEDG 262 (406)
T ss_pred ceeeeeeccCCCCcceeeecc-------------cceeeeEecCCCCceeeec------------ccCCCeeeEEeccCc
Confidence 45667889994 456666652 2355566655544333222 233678899999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeeccc-ccCce--eeccCCceEEEEEeccccceEEEEE
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDL-RYGGI--SWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~-~~~~~--~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
++++.-. ...+.|..||+ ...+.+ ..|..+-. ....+ ...|+|+.|+....++. .++|
T Consensus 263 n~lfsGa------------Rk~dkIl~WDi--R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~--V~vw-- 324 (406)
T KOG2919|consen 263 NKLFSGA------------RKDDKILCWDI--RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS--VRVW-- 324 (406)
T ss_pred Ceecccc------------cCCCeEEEEee--hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc--EEEE--
Confidence 9654431 12346777876 222222 12211111 11223 44678888876643332 4444
Q ss_pred cCCC
Q 002194 487 SPGS 490 (954)
Q Consensus 487 d~~~ 490 (954)
|+++
T Consensus 325 dlk~ 328 (406)
T KOG2919|consen 325 DLKD 328 (406)
T ss_pred ecCC
Confidence 4444
No 273
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.18 E-value=4.7e-05 Score=76.42 Aligned_cols=278 Identities=15% Similarity=0.107 Sum_probs=150.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc---------------------------ccceeeeeeecCCCCCCcceeeE
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELAR---------------------------PEEKLAGLRIDGKCNTRSRMSFY 162 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 162 (954)
..+..+|||||..+|.-+.++-..+.+..+ +-..+.-+.+.|........+.+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 356789999999999877663333222221 11111334444444444444444
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
..|.+.|.... ...+...-+.+...+...+|.|.|..|+... ....+.++|+++-+.-.-. .+....
T Consensus 194 ~tvKlFDfsK~---saKrA~K~~qd~~~vrsiSfHPsGefllvgT---------dHp~~rlYdv~T~Qcfvsa-nPd~qh 260 (430)
T KOG0640|consen 194 NTVKLFDFSKT---SAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---------DHPTLRLYDVNTYQCFVSA-NPDDQH 260 (430)
T ss_pred CeEEEEecccH---HHHHHHHHhhccceeeeEeecCCCceEEEec---------CCCceeEEeccceeEeeec-Cccccc
Confidence 56777777421 1122222244445788899999999999844 4777888888876654322 244445
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
.+.+..+..|+.|++-+..+ . .+.|-++|-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaS---------------------k----------------------------DG~IklwDGV 291 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTAS---------------------K----------------------------DGAIKLWDGV 291 (430)
T ss_pred ccceeEEEecCCccEEEEec---------------------c----------------------------CCcEEeeccc
Confidence 55577888999997555431 1 122444443
Q ss_pred CCc-eeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCccc-CCccccc
Q 002194 322 DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED-IPIAFNS 396 (954)
Q Consensus 322 ~G~-~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~-~p~~~~~ 396 (954)
+++ ++.+.+. ..+.+..|+.|||+|+.+..+. .+.+|.+.++..-......+... .-...+.
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS-------------~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS-------------TVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc-------------eeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 332 2333322 5567889999999999877443 78899998665433222221111 0000000
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-eecccccCceeeccCCceEEEEEe
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+..-...+...||.+ .+.+..||. .++.....+ .++.+.+..+.-||.+-.++..+.
T Consensus 359 vFNhtEdyVl~pDEa--------------------s~slcsWda--Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEA--------------------SNSLCSWDA--RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred hhcCccceEEccccc--------------------cCceeeccc--cchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 101112233333332 335667774 222222333 345666666777888776555443
Q ss_pred ccccceEEEEE
Q 002194 476 YKTRRTRTWVI 486 (954)
Q Consensus 476 ~~~~~~~l~~~ 486 (954)
+ .+.+.|.-
T Consensus 417 D--~raRFWyr 425 (430)
T KOG0640|consen 417 D--FRARFWYR 425 (430)
T ss_pred c--ceeeeeee
Confidence 3 23566653
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.17 E-value=0.00016 Score=75.86 Aligned_cols=213 Identities=19% Similarity=0.122 Sum_probs=118.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeec-CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc-
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wS-PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~- 241 (954)
.|+.++..+ +....+. ++ . .....+. +|| .|+++. ...+.++|.++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~--~-~~G~~~~~~~g-~l~v~~----------~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LP--G-PNGMAFDRPDG-RLYVAD----------SGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SS--S-EEEEEEECTTS-EEEEEE----------TTCEEEEETTTTEEEEEEEEETTCS
T ss_pred EEEEEECCC----CeEEEEe-cC--C-CceEEEEccCC-EEEEEE----------cCceEEEecCCCcEEEEeeccCCCc
Confidence 677777632 3333232 22 2 3444555 665 455543 334566698888877776542111
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
-......+++.|||+ |+++....... ... ....||+++.
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~--------------------------------~~~--------~~g~v~~~~~ 122 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGA--------------------------------SGI--------DPGSVYRIDP 122 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCT--------------------------------TCG--------GSEEEEEEET
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCcc--------------------------------ccc--------cccceEEECC
Confidence 111256889999998 66652211110 000 1156999998
Q ss_pred CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--CceE---EEeccCCCcccCCcccc
Q 002194 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFV---RELCDLPLAEDIPIAFN 395 (954)
Q Consensus 322 ~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~---~~l~~~~~~~~~p~~~~ 395 (954)
+|+.+.+... .....++|||||+.|+++... .+.|+.++++ +... +.+...+...
T Consensus 123 ~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 123 DGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp TSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred CCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 8777766655 566789999999999876533 2378888886 3312 2232222110
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceee-ccCCceEEEEE
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYES 474 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~-spDg~~l~~~~ 474 (954)
.....+++..+|+ +|... -..+.|++++. +|.....+.-....+..++| .+|.+.|+..+
T Consensus 184 ---g~pDG~~vD~~G~--l~va~-----------~~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ---GYPDGLAVDSDGN--LWVAD-----------WGGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---CEEEEEEEBTTS---EEEEE-----------ETTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---cCCCcceEcCCCC--EEEEE-----------cCCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 1234688888886 23211 12558899984 45444555444346778888 46777777654
No 275
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.14 E-value=4.4e-05 Score=74.40 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=115.8
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.-+...+||.|.++|+... ...-|.++|++.- .+..+...+. .+..+.|-...+.|..++
T Consensus 101 hivk~~af~~ds~~lltgg---------~ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSa---- 162 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGG---------QEKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSA---- 162 (334)
T ss_pred heeeeEEecccchhhhccc---------hHHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeec----
Confidence 3677789999999888732 2333444454432 3333333332 267788887776666541
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCCccccccccCCCCc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk 344 (954)
....+.++|. +|. ++.|..+..+.+..+|+||+
T Consensus 163 ---------------------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 163 ---------------------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR 197 (334)
T ss_pred ---------------------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence 1122445676 774 55555557888999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+|..+- ...|..||.+.=. .|... ..| ..+.+.+.+|+.. +++. |
T Consensus 198 ilTia~--------------gssV~Fwdaksf~--~lKs~----k~P-------~nV~SASL~P~k~-~fVa-----G-- 242 (334)
T KOG0278|consen 198 ILTIAY--------------GSSVKFWDAKSFG--LLKSY----KMP-------CNVESASLHPKKE-FFVA-----G-- 242 (334)
T ss_pred EEEEec--------------CceeEEecccccc--ceeec----cCc-------cccccccccCCCc-eEEe-----c--
Confidence 887654 1267778776421 22221 112 2345677888874 3332 1
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEE-eecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.....+|.+|. .+|.+.... .++.+.+-.+.|||||..-+..+.+++ .+||...+..
T Consensus 243 -----ged~~~~kfDy--~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~ 300 (334)
T KOG0278|consen 243 -----GEDFKVYKFDY--NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK 300 (334)
T ss_pred -----CcceEEEEEec--cCCceeeecccCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence 22346777875 234343332 455677788999999985555544443 8899887654
No 276
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.14 E-value=0.0003 Score=71.46 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=77.8
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (954)
..+.+...+|..+...-.+-... +...+..+||-+||.| |+.+.|. -....|.+.|+.++..+
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~D~~--~~gs~~gTVv~~hGsP-----------GSH~DFk----Yi~~~l~~~~iR~I~iN 69 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYEDSL--PSGSPLGTVVAFHGSP-----------GSHNDFK----YIRPPLDEAGIRFIGIN 69 (297)
T ss_pred EEEEcccccCceEEEEEEEEecC--CCCCCceeEEEecCCC-----------CCccchh----hhhhHHHHcCeEEEEeC
Confidence 34455555665443332221111 1122466899999976 3334443 13446778999999944
Q ss_pred CCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
+ .|.|........ ...-.+-...++.|.+.-.++ +++.++|||.|+-.|+.++...| ..++++++|+
T Consensus 70 ~---PGf~~t~~~~~~-~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 70 Y---PGFGFTPGYPDQ-QYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C---CCCCCCCCCccc-ccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 4 455544332211 111122334455566654565 79999999999999999999985 5678887764
No 277
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00021 Score=69.77 Aligned_cols=233 Identities=15% Similarity=0.198 Sum_probs=125.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (954)
..|.|..+...+.....-.|++ +.+.+-.+.|.- -|..||-++. ...+.++.-++|.-.++.....
T Consensus 33 ~tVkIf~v~~n~~s~ll~~L~G--h~GPVwqv~wahPk~G~iLAScsY---------DgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 33 GTVKIFEVRNNGQSKLLAELTG--HSGPVWKVAWAHPKFGTILASCSY---------DGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred ccEEEEEEcCCCCceeeeEecC--CCCCeeEEeecccccCcEeeEeec---------CceEEEEecCCCchhhhhhhhh-
Confidence 4677777755432112223333 223677777865 7888887763 4566666666665444432221
Q ss_pred cccccccceeEecCC--eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 241 YLNAIFDNFVWVNNS--TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 241 ~~~~~~~~~~wspDG--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
..+.+.+++|.|.+ -.|+++ +.+ +.-.|..
T Consensus 101 -h~~SVNsV~wapheygl~Laca---------------------sSD--------------------------G~vsvl~ 132 (299)
T KOG1332|consen 101 -HSASVNSVAWAPHEYGLLLACA---------------------SSD--------------------------GKVSVLT 132 (299)
T ss_pred -hcccceeecccccccceEEEEe---------------------eCC--------------------------CcEEEEE
Confidence 22336788899875 455655 222 2223444
Q ss_pred EEeC-C-ceeEcCCC--ccccccccCCC---C-----------cEEEEEeecCCcccccccCCCCcceEEEeccCceEEE
Q 002194 319 VSLD-G-TVKEIGPP--AVYTSLDPSPD---E-----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (954)
Q Consensus 319 ~~~~-G-~~~~l~~~--~~~~~~~~SpD---G-----------k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~ 380 (954)
++.+ | ....+..- -++.+++|.|- | |+++... -++.+.||+.+.+..+.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-------------cDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-------------CDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-------------CccceeeeecCCcchhh
Confidence 4444 3 22333222 56778888886 5 2232222 23367788777532111
Q ss_pred eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC--CceEEeeccccc
Q 002194 381 LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE--GPEILHKLDLRY 458 (954)
Q Consensus 381 l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~~~l~~~~~~~ 458 (954)
-. .+.++...+|.++|.|.-..-...+. ..+..+.+++|..+ .+++ +.+.|......+
T Consensus 200 e~----------~l~~H~dwVRDVAwaP~~gl~~s~iA---------S~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 200 ER----------TLEGHKDWVRDVAWAPSVGLPKSTIA---------SCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred hh----------hhhhcchhhhhhhhccccCCCceeeE---------EecCCCcEEEEEec-CccCcccccccccCCcce
Confidence 11 12233456788999996532222211 11334455555531 1222 224445555567
Q ss_pred CceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
..++||.-|..|+.+..++. ..||.=+.++
T Consensus 260 w~vSWS~sGn~LaVs~GdNk--vtlwke~~~G 289 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDNK--VTLWKENVDG 289 (299)
T ss_pred EEEEEeccccEEEEecCCcE--EEEEEeCCCC
Confidence 88999999999988765443 6788777665
No 278
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.11 E-value=5.8e-06 Score=84.21 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=108.7
Q ss_pred eEEEEEEcCCCeEEEEEEEcCC-CCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPP-GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~-~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (954)
-.+..+++.||-+|...+..-. +..+++ .-+||.+-|.. +|...+- ...=++.||.|+.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGNA---------------GFYEvG~--m~tP~~lgYsvLG 273 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGNA---------------GFYEVGV--MNTPAQLGYSVLG 273 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCCc---------------cceEeee--ecChHHhCceeec
Confidence 4567888899999887666422 212222 34666666631 1222221 1123678999998
Q ss_pred cCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
....|++.+.+- .+..+..+-+.+++++.+..-...++.|.++|+|-||+-++|+|..+|+ ++|+|+.+.+=|..
T Consensus 274 ---wNhPGFagSTG~-P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDll 348 (517)
T KOG1553|consen 274 ---WNHPGFAGSTGL-PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLL 348 (517)
T ss_pred ---cCCCCccccCCC-CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhh
Confidence 334454444332 1223344455677888888755567889999999999999999999987 89999988653322
Q ss_pred CCCCCCccccchhhh-----cHHHHHhcCcccccCCCCCCEEEEEeCCCCCCC
Q 002194 798 LTPFGFQNEDRTLWE-----ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (954)
Q Consensus 798 ~~~~~~~~~~~~~~~-----~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~ 845 (954)
... .. .....|. ....+...+....+.+.+.|+++|--++|+++.
T Consensus 349 pLA--l~-rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 349 PLA--LF-RMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hHH--hh-hchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 111 00 0111121 122233333344556678999999999998764
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.11 E-value=0.0014 Score=82.49 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=68.4
Q ss_pred cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC--CccccccccCccceeeccCCCC
Q 002194 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI--PIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 335 ~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~--p~~~~~~~~g~~~~~wspDg~~ 412 (954)
..++++|++..|+++... ...|++|+..++....+......... ..........+..++|+|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 357889976666655422 23788999887665544321100000 0000011234567999999987
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc----------------------cccCceeeccCCceE
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------------------LRYGGISWCDDSLAL 470 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~----------------------~~~~~~~~spDg~~l 470 (954)
|++. + ...+.|++++. +++....+...+ ....++++++||. |
T Consensus 754 LYVA-D-----------s~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L 817 (1057)
T PLN02919 754 LYIA-D-----------SESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I 817 (1057)
T ss_pred EEEE-E-----------CCCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-E
Confidence 6554 2 22457888885 333332222110 1234678999997 3
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (954)
|.++..+ .+|.++|.+++
T Consensus 818 -YVADs~N--~rIrviD~~tg 835 (1057)
T PLN02919 818 -YVADSYN--HKIKKLDPATK 835 (1057)
T ss_pred -EEEECCC--CEEEEEECCCC
Confidence 3333333 56888888775
No 280
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=7.5e-05 Score=73.16 Aligned_cols=226 Identities=14% Similarity=0.173 Sum_probs=129.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|+|.++.+.+ ..+.+..+........++||+.-..++++.. ++|..+||-..... .+.+........
T Consensus 38 G~L~ile~~~~~---gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDGSLrl~d~~~~s-~Pi~~~kEH~~E- 106 (311)
T KOG0277|consen 38 GRLFILEVTDPK---GIQECQSYDTEDGLFDVAWSENHENQVIAAS------GDGSLRLFDLTMPS-KPIHKFKEHKRE- 106 (311)
T ss_pred ceEEEEecCCCC---CeEEEEeeecccceeEeeecCCCcceEEEEe------cCceEEEeccCCCC-cchhHHHhhhhh-
Confidence 578998885222 1222222222235788999999888888764 55666666522212 222222222222
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~ 322 (954)
+.++.|.+-.+.++.++ .+| ++-.||.-+..
T Consensus 107 ---V~Svdwn~~~r~~~lts---------------------------------------SWD-------~TiKLW~~~r~ 137 (311)
T KOG0277|consen 107 ---VYSVDWNTVRRRIFLTS---------------------------------------SWD-------GTIKLWDPNRP 137 (311)
T ss_pred ---eEEeccccccceeEEee---------------------------------------ccC-------CceEeecCCCC
Confidence 66888987766666551 112 33445544443
Q ss_pred CceeEcCCC-ccccccccCCC-CcEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCccccccc
Q 002194 323 GTVKEIGPP-AVYTSLDPSPD-EKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 323 G~~~~l~~~-~~~~~~~~SpD-Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~~~~~~~ 398 (954)
..++..... ..+....|||- +..++..+.+ +.+.+||++ |+... +..+.
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~-i~ah~------------- 190 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMS-IEAHN------------- 190 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeE-EEecc-------------
Confidence 334444444 66778899994 5566666633 378899987 33322 32221
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccc
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
.......|+.=...+++. + +..+.|+.||+.... .....|..+...++.+.|||-...|+.+...+-
T Consensus 191 ~Eil~cdw~ky~~~vl~T-----g-------~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLAT-----G-------GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred ceeEeecccccCCcEEEe-----c-------CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 112345687766666665 1 335578888862111 123455677788899999999888877777663
Q ss_pred cceEEEEEcCC
Q 002194 479 RRTRTWVISPG 489 (954)
Q Consensus 479 ~~~~l~~~d~~ 489 (954)
. .+||.....
T Consensus 258 T-~riw~~~~~ 267 (311)
T KOG0277|consen 258 T-VRIWDPERQ 267 (311)
T ss_pred e-EEecccccc
Confidence 2 667765533
No 281
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.0019 Score=72.04 Aligned_cols=120 Identities=15% Similarity=0.091 Sum_probs=71.4
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc--Cce-EEEeccCCCcccCCccccccccCccceeecc
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wsp 408 (954)
..+...+.||||.+|++.+-. ++.+|.+. ... .+.+...+.. ......+.|+-
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~--------------~~~iy~L~~~~~vk~~~v~~~~~~----------~~~a~~i~fti 438 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS--------------RTKIYRLQPDPNVKVINVDDVPLA----------LLDASAISFTI 438 (691)
T ss_pred cceeeeccCCCCCEEEEeecc--------------ceEEEEeccCcceeEEEeccchhh----------hccceeeEEEe
Confidence 667788999999999998833 44455544 311 1222222211 12335688999
Q ss_pred CCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEee--cccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--LDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
|+..+++.. . ....+..++++.-+..+...+.. ....+..+.-||||.+|+..+.. ..|+++
T Consensus 439 d~~k~~~~s--~----------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~----g~I~v~ 502 (691)
T KOG2048|consen 439 DKNKLFLVS--K----------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR----GQIFVY 502 (691)
T ss_pred cCceEEEEe--c----------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc----ceEEEE
Confidence 999887762 0 12245566541112222222221 23345678899999999998633 458999
Q ss_pred cCCCC
Q 002194 487 SPGSK 491 (954)
Q Consensus 487 d~~~~ 491 (954)
++.+.
T Consensus 503 nl~~~ 507 (691)
T KOG2048|consen 503 NLETL 507 (691)
T ss_pred Ecccc
Confidence 98885
No 282
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.09 E-value=2.9e-05 Score=86.20 Aligned_cols=109 Identities=9% Similarity=-0.059 Sum_probs=73.1
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH--CCcEEEEcCCCCCCCCCCcccc--hhhHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA--RGFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEA 745 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~ 745 (954)
.|++|++||.... + .+..+.......|.. ..|.|++ .|..|+|.+... ..+.....+++.+
T Consensus 41 ~ptvIlIHG~~~s---------~---~~~~w~~~l~~al~~~~~d~nVI~---VDw~g~g~s~y~~a~~~t~~vg~~la~ 105 (442)
T TIGR03230 41 TKTFIVIHGWTVT---------G---MFESWVPKLVAALYEREPSANVIV---VDWLSRAQQHYPTSAAYTKLVGKDVAK 105 (442)
T ss_pred CCeEEEECCCCcC---------C---cchhhHHHHHHHHHhccCCCEEEE---EECCCcCCCCCccccccHHHHHHHHHH
Confidence 4889999995311 0 011112122333332 3699999 555566655332 1222344567778
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccC
Q 002194 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (954)
Q Consensus 746 av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (954)
.+++|.+...++.+++.|+|||+||.+|..++.+.|+++..++.+.|+
T Consensus 106 lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 106 FVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred HHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 888887654467789999999999999999999999999999999875
No 283
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.09 E-value=2.8e-05 Score=75.56 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC--------CcccEEEEeccCCCCCCCCCCCccccchhhhcH
Q 002194 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP--------HLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 814 (954)
Q Consensus 743 ~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p--------~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (954)
+....+|+++++--| +|+|+|.|+.|+..+++... ..|+-+|.++|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 455667788887777 89999999999999988211 13688888888532110
Q ss_pred HHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 815 STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 815 ~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
.+.-..+...+++|.|-|.|+.|.+|| ...+..|++..... ..+..|+ ||.+-. .....+.|.+||
T Consensus 152 ----~~~~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~~~~~~~i~~fi 217 (230)
T KOG2551|consen 152 ----KLDESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHPG-GHIVPN---KAKYKEKIADFI 217 (230)
T ss_pred ----hhhhhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecCC-CccCCC---chHHHHHHHHHH
Confidence 000112234578999999999999998 88899999998766 5555665 998743 236678899999
Q ss_pred HHhcc
Q 002194 895 QKYCV 899 (954)
Q Consensus 895 ~~~l~ 899 (954)
+..+.
T Consensus 218 ~~~~~ 222 (230)
T KOG2551|consen 218 QSFLQ 222 (230)
T ss_pred HHHHH
Confidence 88764
No 284
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.09 E-value=2e-05 Score=78.60 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=80.7
Q ss_pred eEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH-CCcEEEE
Q 002194 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILG 717 (954)
Q Consensus 639 ~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~ 717 (954)
.+.+.+++.++ ++..++-+|.. + .-|++++.|||..... .|. .++..+.+ --..|++
T Consensus 50 kedv~i~~~~~-t~n~Y~t~~~~----t--~gpil~l~HG~G~S~L-----------SfA----~~a~el~s~~~~r~~a 107 (343)
T KOG2564|consen 50 KEDVSIDGSDL-TFNVYLTLPSA----T--EGPILLLLHGGGSSAL-----------SFA----IFASELKSKIRCRCLA 107 (343)
T ss_pred ccccccCCCcc-eEEEEEecCCC----C--CccEEEEeecCcccch-----------hHH----HHHHHHHhhcceeEEE
Confidence 45666666554 67777777752 1 3699999999742211 121 23334443 3566788
Q ss_pred cCCCCCCCCCCcccc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--CCcccEEEEec
Q 002194 718 GPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARS 791 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~---~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~ 791 (954)
+|.+|+|+.... .-..+....|+.+.++++... .+.+|.++||||||.++.+.+... |. +.+++.+.
T Consensus 108 ---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 108 ---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred ---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 788899987442 222456789999888887533 345799999999999998887653 44 55555543
No 285
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.00093 Score=69.62 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=125.7
Q ss_pred ceEEEEccCCCCCCcee-eeecCCCCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 164 GIGIHQLFPDGKLGQEI-EIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~-~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
-++++|..+ ++.. .+. .+.+. ...+-.|||||++|+.+.. ....+..-|-++|+.. ..+++-..+..+
T Consensus 29 ~~~v~D~~~----g~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEn----d~~~g~G~IgVyd~~~-~~~ri~E~~s~G 98 (305)
T PF07433_consen 29 FALVFDCRT----GQLLQRLW-APPGRHFYGHGVFSPDGRLLYTTEN----DYETGRGVIGVYDAAR-GYRRIGEFPSHG 98 (305)
T ss_pred EEEEEEcCC----CceeeEEc-CCCCCEEecCEEEcCCCCEEEEecc----ccCCCcEEEEEEECcC-CcEEEeEecCCC
Confidence 456767643 3333 333 23333 6678899999997766542 2355677888889873 344454333322
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+ ....+.|.|||+.|+++ +.+.. ..+..++. +...-.....|..+|.
T Consensus 99 I--GPHel~l~pDG~tLvVA---NGGI~-----------Thpd~GR~-----------------kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 99 I--GPHELLLMPDGETLVVA---NGGIE-----------THPDSGRA-----------------KLNLDTMQPSLVYLDA 145 (305)
T ss_pred c--ChhhEEEcCCCCEEEEE---cCCCc-----------cCcccCce-----------------ecChhhcCCceEEEec
Confidence 1 02378899999888877 11110 00000000 0000013456888887
Q ss_pred -CCce-eE--cCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccc
Q 002194 322 -DGTV-KE--IGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAF 394 (954)
Q Consensus 322 -~G~~-~~--l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~ 394 (954)
+|++ .+ +... -.+..+++++||.-+.-.....+.... ..-+.+++.. +..+.+.. +... .
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~------~PLva~~~~g-~~~~~~~~-p~~~-----~ 212 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDA------PPLVALHRRG-GALRLLPA-PEEQ-----W 212 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCcc------CCeEEEEcCC-CcceeccC-ChHH-----H
Confidence 8853 33 4322 578899999999765544433221110 1122222222 11222221 1110 1
Q ss_pred cccccCccceeeccCCCCceEEEEeccCCCccccccC-CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEE
Q 002194 395 NSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 395 ~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~ 473 (954)
......+.++++++||..++.. +. .+.+.+|+. .++...... .-.++.+++-.+++ ++.+
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~t-------------sPrGg~~~~~d~---~tg~~~~~~-~l~D~cGva~~~~~--f~~s 273 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVT-------------SPRGGRVAVWDA---ATGRLLGSV-PLPDACGVAPTDDG--FLVS 273 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEE-------------CCCCCEEEEEEC---CCCCEeecc-ccCceeeeeecCCc--eEEe
Confidence 1223455789999999987776 22 346778875 444332221 12234556666666 3332
Q ss_pred EeccccceEEEEEcCCC
Q 002194 474 SWYKTRRTRTWVISPGS 490 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~~ 490 (954)
+. ...++.++..+
T Consensus 274 sG----~G~~~~~~~~~ 286 (305)
T PF07433_consen 274 SG----QGQLIRLSPDG 286 (305)
T ss_pred CC----CccEEEccCcc
Confidence 21 13466665544
No 286
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.08 E-value=0.00089 Score=66.35 Aligned_cols=184 Identities=11% Similarity=0.069 Sum_probs=107.7
Q ss_pred eeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCC
Q 002194 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (954)
Q Consensus 194 ~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~ 273 (954)
....-|.++++. +.....+.+||+++|+.......+.. +..+.|+.+|.++++++...-+.
T Consensus 58 ~Did~~s~~liT---------GSAD~t~kLWDv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~----- 118 (327)
T KOG0643|consen 58 CDIDWDSKHLIT---------GSADQTAKLWDVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGY----- 118 (327)
T ss_pred EEecCCcceeee---------ccccceeEEEEcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCc-----
Confidence 333345677766 33466677778888887655444432 66889999999988873321111
Q ss_pred CCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C------C-c-eeEcCCC-ccccccccCCCC
Q 002194 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D------G-T-VKEIGPP-AVYTSLDPSPDE 343 (954)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~------G-~-~~~l~~~-~~~~~~~~SpDG 343 (954)
...|..+++ + + + ...|..+ ..++..-|+|-|
T Consensus 119 ---------------------------------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 119 ---------------------------------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred ---------------------------------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 112333333 1 1 2 3334444 677888999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
+.|++.-.. +.|.+||+.++. ...-.. . +...+.++.+|||... |.+..
T Consensus 160 ~~ii~Ghe~-------------G~is~~da~~g~~~v~s~~-~-----------h~~~Ind~q~s~d~T~--FiT~s--- 209 (327)
T KOG0643|consen 160 ETIIAGHED-------------GSISIYDARTGKELVDSDE-E-----------HSSKINDLQFSRDRTY--FITGS--- 209 (327)
T ss_pred CEEEEecCC-------------CcEEEEEcccCceeeechh-h-----------hccccccccccCCcce--EEecc---
Confidence 999987633 388899998653 222111 0 1134567899999973 33222
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
......++|. ..-+...-...+..++..+++|--..++.....
T Consensus 210 --------~Dttakl~D~---~tl~v~Kty~te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 210 --------KDTTAKLVDV---RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred --------cCccceeeec---cceeeEEEeeecccccceecccccceEEecCCc
Confidence 2223445554 222222223345667888999987777776433
No 287
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.08 E-value=9e-05 Score=77.47 Aligned_cols=213 Identities=13% Similarity=0.155 Sum_probs=128.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccc---------cccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEE---------LARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
.+....|-+|+++++-.+++....+|. |..+..++..+.+.-.......++.+..|.+||+.. +.. .+
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C--~k 297 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYC--SK 297 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hhe--ec
Confidence 466788999999998888875444443 334555555544443333333344456788888832 111 11
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (954)
.+ ++ +..+..+.-+ ....+ + +--...|..+|..++..++..+..+. +.++.-++||..|..
T Consensus 298 t~--l~-~S~cnDI~~~---~~~~~-S-------gH~DkkvRfwD~Rs~~~~~sv~~gg~-----vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 298 TV--LP-GSQCNDIVCS---ISDVI-S-------GHFDKKVRFWDIRSADKTRSVPLGGR-----VTSLDLSMDGLELLS 358 (459)
T ss_pred cc--cc-cccccceEec---ceeee-e-------cccccceEEEeccCCceeeEeecCcc-----eeeEeeccCCeEEee
Confidence 11 22 2245555554 22233 2 11233477778777777666555553 788999999987775
Q ss_pred EecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC------cc
Q 002194 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP------AV 333 (954)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~------~~ 333 (954)
.++ ...+-++|+ +.+++..... ..
T Consensus 359 ssR-------------------------------------------------Ddtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 359 SSR-------------------------------------------------DDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ecC-------------------------------------------------CCceeeeecccccEEEEeeccccccccc
Confidence 521 112445666 4444443321 34
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
.+.+.|||||++++..+.++ .++||++.+++...+...+.. ..++..++|+|-|+.+
T Consensus 390 wtrvvfSpd~~YvaAGS~dg-------------sv~iW~v~tgKlE~~l~~s~s----------~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADG-------------SVYIWSVFTGKLEKVLSLSTS----------NAAITSLSWNPSGSGL 446 (459)
T ss_pred cceeEECCCCceeeeccCCC-------------cEEEEEccCceEEEEeccCCC----------CcceEEEEEcCCCchh
Confidence 56789999999999988543 899999998877655443322 1356789999999876
Q ss_pred eEE
Q 002194 414 LYW 416 (954)
Q Consensus 414 ~~~ 416 (954)
+-.
T Consensus 447 lsa 449 (459)
T KOG0288|consen 447 LSA 449 (459)
T ss_pred hcc
Confidence 554
No 288
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.08 E-value=4.2e-05 Score=80.64 Aligned_cols=149 Identities=19% Similarity=0.067 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcE-EEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC-------------------CC
Q 002194 738 QLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN-------------------RT 797 (954)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~-------------------~~ 797 (954)
..+.|...+-+.|.+.-.| +++ +|+|.||||+.|+..+..+|+++..+|.++.... ..
T Consensus 127 ~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~ 204 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPD 204 (368)
T ss_pred ccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCC
Confidence 4478888888888776445 354 5999999999999999999999988888775311 00
Q ss_pred C-----CCCCCcccc--------------------chhhh--------------cHHHH---------------------
Q 002194 798 L-----TPFGFQNED--------------------RTLWE--------------ATSTY--------------------- 817 (954)
Q Consensus 798 ~-----~~~~~~~~~--------------------~~~~~--------------~~~~~--------------------- 817 (954)
. +. +...+. ..++. ..+.|
T Consensus 205 ~n~G~Y~~-~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt 283 (368)
T COG2021 205 WNGGDYYE-GTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLT 283 (368)
T ss_pred ccCCCccC-CCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 0 00 000000 00000 11111
Q ss_pred ---HhcCccc-------ccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCCcCCCcccHHHH
Q 002194 818 ---VEMSPFM-------SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHV 886 (954)
Q Consensus 818 ---~~~sp~~-------~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~ 886 (954)
..+++-. .+++++.|+|++.-+.|...| +++.+++.++|+..++ +++++ ..||.-... ....+
T Consensus 284 ~ald~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp--~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~-e~~~~ 357 (368)
T COG2021 284 RALDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFP--PELQRALAEALPAAGA---LREIDSPYGHDAFLV-ESEAV 357 (368)
T ss_pred HHHHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCC--HHHHHHHHHhccccCc---eEEecCCCCchhhhc-chhhh
Confidence 1122222 267789999999999999999 9999999999998865 54444 468864322 22334
Q ss_pred HHHHHHHHH
Q 002194 887 LWETDRWLQ 895 (954)
Q Consensus 887 ~~~i~~fl~ 895 (954)
...|..||.
T Consensus 358 ~~~i~~fL~ 366 (368)
T COG2021 358 GPLIRKFLA 366 (368)
T ss_pred hHHHHHHhh
Confidence 455666654
No 289
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.08 E-value=5.8e-05 Score=77.65 Aligned_cols=229 Identities=15% Similarity=0.151 Sum_probs=136.3
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~ 241 (954)
..|++||..+ |+. .+-|.++++ .+..++++.-|+.|+-++. ...+.++|.++ -+.++.-..++.
T Consensus 130 ~tikv~D~~t-g~~--e~~LrGHt~--sv~di~~~a~Gk~l~tcSs---------Dl~~~LWd~~~~~~c~ks~~gh~h- 194 (406)
T KOG0295|consen 130 ATIKVFDTET-GEL--ERSLRGHTD--SVFDISFDASGKYLATCSS---------DLSAKLWDFDTFFRCIKSLIGHEH- 194 (406)
T ss_pred ceEEEEEccc-hhh--hhhhhcccc--ceeEEEEecCccEEEecCC---------ccchhheeHHHHHHHHHHhcCccc-
Confidence 4799999854 433 455666554 4888999999999998763 22244445444 122222222222
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+++.+.+-|-|..|+.... ...|..+++
T Consensus 195 ---~vS~V~f~P~gd~ilS~sr-------------------------------------------------D~tik~We~ 222 (406)
T KOG0295|consen 195 ---GVSSVFFLPLGDHILSCSR-------------------------------------------------DNTIKAWEC 222 (406)
T ss_pred ---ceeeEEEEecCCeeeeccc-------------------------------------------------ccceeEEec
Confidence 2778889999988875511 122445555
Q ss_pred -CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe-ccCCCcccCCcccccc
Q 002194 322 -DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSV 397 (954)
Q Consensus 322 -~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l-~~~~~~~~~p~~~~~~ 397 (954)
+| ....+... ..+..+..+-||..++..+++ +.+.+|-+.+++.+.+ ..++..
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hEh~---------- 279 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHEHP---------- 279 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccccc----------
Confidence 55 55666665 778888999999888877744 3888999887754332 222211
Q ss_pred ccCccceeeccCCCCceEEEE--eccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 398 RKGMRSINWRSDKPSTLYWAE--TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+.-++|.|+...--..-. ..+++......+....|-.|++ ..|.-.-.|..++..+.+++|+|.|++|+..++
T Consensus 280 ---vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 280 ---VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ---eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 123556665431111100 0011111122233456778886 333333455677778899999999999999887
Q ss_pred ccccceEEEEEcC
Q 002194 476 YKTRRTRTWVISP 488 (954)
Q Consensus 476 ~~~~~~~l~~~d~ 488 (954)
+++ .++|.+..
T Consensus 355 Dkt--lrvwdl~~ 365 (406)
T KOG0295|consen 355 DKT--LRVWDLKN 365 (406)
T ss_pred CCc--EEEEEecc
Confidence 765 56665543
No 290
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.07 E-value=0.00011 Score=75.69 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=143.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+....+.|+--.++.++ +...|+++|..+|+...-..+.... +.++.++..|+.|+..+
T Consensus 110 ~vt~v~~hp~~~~v~~as---------~d~tikv~D~~tg~~e~~LrGHt~s----v~di~~~a~Gk~l~tcS------- 169 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSAS---------EDATIKVFDTETGELERSLRGHTDS----VFDISFDASGKYLATCS------- 169 (406)
T ss_pred ceeeeeeccCceEEEEec---------CCceEEEEEccchhhhhhhhccccc----eeEEEEecCccEEEecC-------
Confidence 566677788654444432 3678999999998874333333222 56888999999888661
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC---ceeEcCCC-ccccccccCCCCcE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG---TVKEIGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G---~~~~l~~~-~~~~~~~~SpDGk~ 345 (954)
.+ -.+.++|.+. ..+.+... ..+..+.|-|-|.+
T Consensus 170 --------------sD----------------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 170 --------------SD----------------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred --------------Cc----------------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCe
Confidence 11 0122333322 22333333 67788999999999
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+..+.+. .|..|+++++.. +.+..+ +..++.+.-+-||..++--
T Consensus 208 ilS~srD~-------------tik~We~~tg~cv~t~~~h-------------~ewvr~v~v~~DGti~As~-------- 253 (406)
T KOG0295|consen 208 ILSCSRDN-------------TIKAWECDTGYCVKTFPGH-------------SEWVRMVRVNQDGTIIASC-------- 253 (406)
T ss_pred eeeccccc-------------ceeEEecccceeEEeccCc-------------hHhEEEEEecCCeeEEEec--------
Confidence 98877443 789999997643 444332 2456677778888644433
Q ss_pred ccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCC---------------ceEEEEEeccccceEEEEEcC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDS---------------LALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg---------------~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+....|.+|-. ++++ ...+..++..+.-++|.|+. ..++..++++. |-.+|+
T Consensus 254 -----s~dqtl~vW~~---~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt----Ik~wdv 321 (406)
T KOG0295|consen 254 -----SNDQTLRVWVV---ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT----IKIWDV 321 (406)
T ss_pred -----CCCceEEEEEe---ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce----EEEEec
Confidence 33456666664 3332 22334445555555554432 23444433332 444455
Q ss_pred CCCCCCcEEEe--cCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEE
Q 002194 489 GSKDVAPRILF--DRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (954)
Q Consensus 489 ~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 566 (954)
.++ ..++ ......+.+ ++|+|.|++|+.... ...|.+||++.+....
T Consensus 322 ~tg----~cL~tL~ghdnwVr~------~af~p~Gkyi~ScaD---------------------Dktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 322 STG----MCLFTLVGHDNWVRG------VAFSPGGKYILSCAD---------------------DKTLRVWDLKNLQCMK 370 (406)
T ss_pred cCC----eEEEEEecccceeee------eEEcCCCeEEEEEec---------------------CCcEEEEEeccceeee
Confidence 554 2332 233333444 889999999988762 2349999999888776
Q ss_pred EeccC
Q 002194 567 IWESD 571 (954)
Q Consensus 567 l~~~~ 571 (954)
.+...
T Consensus 371 ~~~ah 375 (406)
T KOG0295|consen 371 TLEAH 375 (406)
T ss_pred ccCCC
Confidence 66533
No 291
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.03 E-value=0.00033 Score=75.77 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec-cCCCCCC------CCCC-Ccc---
Q 002194 741 ACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG-FQN--- 805 (954)
Q Consensus 741 ~D~~~av~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~~~~~------~~~~-~~~--- 805 (954)
.-+..|++.+.+ ...++.++..|.|.|-=|..+..+++.+ +|++|+|.+. .+.|+.. ..++ .+.
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 334444444433 3456778999999999999999888866 7888888764 3333211 0111 110
Q ss_pred -----ccchhh----hcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCc
Q 002194 806 -----EDRTLW----EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (954)
Q Consensus 806 -----~~~~~~----~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (954)
+.-..+ +-.+...-.+|+.+.++++.|-|||.|..|+... ++.+.-++..|+. ++.+..+|+++|.
T Consensus 229 ~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H~ 303 (367)
T PF10142_consen 229 QDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGHS 303 (367)
T ss_pred hhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCcc
Confidence 000000 0112334568999999999999999999999987 8999999999875 4788999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhcccCC
Q 002194 877 YAARESIMHVLWETDRWLQKYCVSNT 902 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (954)
... ....+.+..|+...+...+
T Consensus 304 ~~~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 304 LIG----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred cch----HHHHHHHHHHHHHHHcCCC
Confidence 864 5677889999998765543
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.02 E-value=0.0018 Score=81.50 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=70.4
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCc--c-cCCc------cccccccCccce
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLA--E-DIPI------AFNSVRKGMRSI 404 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~--~-~~p~------~~~~~~~g~~~~ 404 (954)
..+++++|||++|+++... ...|.+||++++..+.+...... . ...+ ........+..+
T Consensus 742 P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 3467899999988776533 23899999886554433321100 0 0000 000111234578
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecc--------------cccCceeeccCCceE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--------------LRYGGISWCDDSLAL 470 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~--------------~~~~~~~~spDg~~l 470 (954)
++++||+ +|.++ ...+.|.+++. +++....+.... ....++++++||+ |
T Consensus 810 avd~dG~--LYVAD-----------s~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-l 872 (1057)
T PLN02919 810 LCAKDGQ--IYVAD-----------SYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-L 872 (1057)
T ss_pred eEeCCCc--EEEEE-----------CCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-E
Confidence 8999996 34433 23557888885 455444432211 1345689999997 4
Q ss_pred EEEEeccccceEEEEEcCCCC
Q 002194 471 VYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+ .++..+ .+|.++++.++
T Consensus 873 y-VaDt~N--n~Irvid~~~~ 890 (1057)
T PLN02919 873 F-VADTNN--SLIRYLDLNKG 890 (1057)
T ss_pred E-EEECCC--CEEEEEECCCC
Confidence 3 334333 46888888775
No 293
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.01 E-value=0.0001 Score=77.63 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=47.6
Q ss_pred cEEEEcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 713 FAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
|.|+. .+..|+|.+. .. ........++... .+.-.. .++.++|||+||.++..++.++|++++++|.++
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~----~~~~~~--~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAAL----LDALGL--EKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHH----HHHhCC--CceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 88888 5556777774 10 0111113333333 332222 349999999999999999999999999999888
Q ss_pred cC
Q 002194 792 GA 793 (954)
Q Consensus 792 ~~ 793 (954)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
No 294
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.00 E-value=0.00013 Score=79.85 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=120.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecC-CCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSP-DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|-|++++..|.+-. ..+.++-.+..+....|.| |..+||... +++..+||.+.+.|+.....|....-.
T Consensus 603 G~iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred ceEEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEeccCCCCcccCCcceeee
Confidence 3566777765443321 2233344556888999999 888999865 567899999998776543332211100
Q ss_pred -ccccccceeEecCC-eEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEE
Q 002194 242 -LNAIFDNFVWVNNS-TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLV 319 (954)
Q Consensus 242 -~~~~~~~~~wspDG-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~ 319 (954)
...-+.++.|.|=- ..|+.+ . ....|-++
T Consensus 675 ~h~eKI~slRfHPLAadvLa~a----------------------------------------s---------yd~Ti~lW 705 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVA----------------------------------------S---------YDSTIELW 705 (1012)
T ss_pred cccceEEEEEecchhhhHhhhh----------------------------------------h---------ccceeeee
Confidence 00003345555421 111111 1 12345566
Q ss_pred Ee-CCc-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002194 320 SL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 320 ~~-~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (954)
|+ +++ ..++... +.+.+++|||||+.++.+..+ +.+++|....++ +++...++..
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD-------------g~~rVy~Prs~e-~pv~Eg~gpv-------- 763 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD-------------GTLRVYEPRSRE-QPVYEGKGPV-------- 763 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecC-------------ceEEEeCCCCCC-CccccCCCCc--------
Confidence 77 553 3345444 889999999999999998744 388888876443 2222222111
Q ss_pred cccCccceeeccCCCCceEE-EEeccCCCccccccCCCeEEEEecCCCCCCCceEE-eecccccCceeeccCCceEEEEE
Q 002194 397 VRKGMRSINWRSDKPSTLYW-AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
....-.+.|.=||+.+++. .+. ....+|.+|+++.++++..... .+..-..--+.+.+|...|+...
T Consensus 764 -gtRgARi~wacdgr~viv~Gfdk----------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 -GTRGARILWACDGRIVIVVGFDK----------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred -cCcceeEEEEecCcEEEEecccc----------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 0111248899999977765 211 2233666777533333322111 11111122356677877665554
No 295
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.0042 Score=66.31 Aligned_cols=145 Identities=14% Similarity=0.084 Sum_probs=80.0
Q ss_pred cceEEEEEe-CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccC
Q 002194 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDI 390 (954)
Q Consensus 313 ~~~l~~~~~-~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~ 390 (954)
..+|++++. +|+.+.+..+..+.+...-.++..|+... + .+++++.+.+.. +.++..... .
T Consensus 46 ~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~~~--~ 108 (307)
T COG3386 46 GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPEDG--L 108 (307)
T ss_pred CCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEeccccCC--C
Confidence 356889998 78777776664444433333343444333 1 566777664444 444432211 1
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCC-CccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG-DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
+. ...+.....|||. ||+...... ....+....+.||+++. .++..+.+...-...++++|||||+.
T Consensus 109 ~~------~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 109 PL------NRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred Cc------CCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCE
Confidence 11 2234567888886 443333200 00011122347888872 44455555554555688999999998
Q ss_pred EEEEEeccccceEEEEEcCC
Q 002194 470 LVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~ 489 (954)
++++.... .+||+++.+
T Consensus 177 ly~aDT~~---~~i~r~~~d 193 (307)
T COG3386 177 LYVADTPA---NRIHRYDLD 193 (307)
T ss_pred EEEEeCCC---CeEEEEecC
Confidence 88875433 568888776
No 296
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.99 E-value=0.001 Score=71.94 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=77.5
Q ss_pred EEeCCceeE-cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC-ceEEEeccCCCcccCCcccc
Q 002194 319 VSLDGTVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFN 395 (954)
Q Consensus 319 ~~~~G~~~~-l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g-~~~~~l~~~~~~~~~p~~~~ 395 (954)
+.-+|-.+. +... ..+..++|.||...|+|.... .+++-.+.- .++-+...+.
T Consensus 131 WSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--------------h~~IKpL~~n~k~i~WkAHD---------- 186 (737)
T KOG1524|consen 131 WSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--------------HISIKPLAANSKIIRWRAHD---------- 186 (737)
T ss_pred EeccchHHHHHhhcCceeEEEEECCCCCceEEecCC--------------eEEEeecccccceeEEeccC----------
Confidence 333664332 3333 677889999999999998732 455544441 1111222211
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
+-+-.+.|++....|+-. ++.-+.-+||. .|...-.-..++..+.+++|.||..+++.+-
T Consensus 187 ---GiiL~~~W~~~s~lI~sg-------------GED~kfKvWD~---~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~- 246 (737)
T KOG1524|consen 187 ---GLVLSLSWSTQSNIIASG-------------GEDFRFKIWDA---QGANLFTSAAEEYAITSVAFNPEKDYLLWSY- 246 (737)
T ss_pred ---cEEEEeecCccccceeec-------------CCceeEEeecc---cCcccccCChhccceeeeeeccccceeeeee-
Confidence 123456788877655432 22334556773 3332222244677889999999944444332
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+. +..-.+ ..+.++. ++||+||..++...
T Consensus 247 -nt----~R~~~p-------------~~GSifn------lsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 247 -NT----ARFSSP-------------RVGSIFN------LSWSADGTQATCGT 275 (737)
T ss_pred -ee----eeecCC-------------CccceEE------EEEcCCCceeeccc
Confidence 11 111111 1222333 89999999887765
No 297
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.97 E-value=0.0024 Score=67.37 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=46.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceE-EEEEECCCCceeecccCCCc-
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLR-VWVADVDTGKARPLFQSPDI- 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~-l~~~d~~~g~~~~lt~~~~~- 240 (954)
+.++++|... ++ +.+.-+.+...++..||||+.++.....-++..+....+ |-++|..+-+.+.=...+..
T Consensus 17 ~rv~viD~d~----~k---~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS----GK---LLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT----TE---EEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC----Cc---EEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 3688877532 22 222212234566788999999987654332222333333 45678776433221111211
Q ss_pred ccc--ccccceeEecCCeEEEEE
Q 002194 241 YLN--AIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 241 ~~~--~~~~~~~wspDG~~l~~~ 261 (954)
... .....++.|+||+++++.
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEE
T ss_pred hheecccccceEEccCCcEEEEE
Confidence 110 013477899999999976
No 298
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.95 E-value=6.7e-05 Score=80.65 Aligned_cols=166 Identities=17% Similarity=0.300 Sum_probs=99.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee-ecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
+.+..-+|+|||.-|+.+. .+|...+| .- +|-.| .+...... +...+|.|+...++|.
T Consensus 105 ~A~~~gRW~~dGtgLlt~G-------EDG~iKiW--Sr-sGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c------ 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAG-------EDGVIKIW--SR-SGMLRSTVVQNEES-----IRCARWAPNSNSIVFC------ 163 (737)
T ss_pred hhhhhcccCCCCceeeeec-------CCceEEEE--ec-cchHHHHHhhcCce-----eEEEEECCCCCceEEe------
Confidence 4677889999999988743 34444555 43 34333 23333332 6688999999888887
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CC-ceeEcCCCccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DG-TVKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G-~~~~l~~~~~~~~~~~SpDGk 344 (954)
...++++-.+ .- ..+.-..++.+-..+|+|...
T Consensus 164 --------------------------------------------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~ 199 (737)
T KOG1524|consen 164 --------------------------------------------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN 199 (737)
T ss_pred --------------------------------------------cCCeEEEeecccccceeEEeccCcEEEEeecCcccc
Confidence 2345666666 22 233333447778899999888
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
.|+....+ ....+||..|...-.-. ..+.| ..+++|.|| +..++|
T Consensus 200 lI~sgGED-------------~kfKvWD~~G~~Lf~S~----~~ey~---------ITSva~npd-~~~~v~-------- 244 (737)
T KOG1524|consen 200 IIASGGED-------------FRFKIWDAQGANLFTSA----AEEYA---------ITSVAFNPE-KDYLLW-------- 244 (737)
T ss_pred ceeecCCc-------------eeEEeecccCcccccCC----hhccc---------eeeeeeccc-cceeee--------
Confidence 77765422 25668887764321111 11222 367899999 543343
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEee-cccccCceeeccCCceEEEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~-~~~~~~~~~~spDg~~l~~~~ 474 (954)
.++. -++.. .-+.+..++||+||..++...
T Consensus 245 ------------S~nt--------~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 245 ------------SYNT--------ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ------------eeee--------eeecCCCccceEEEEEcCCCceeeccc
Confidence 1110 11222 234567889999999988765
No 299
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.94 E-value=0.00073 Score=68.12 Aligned_cols=250 Identities=15% Similarity=0.132 Sum_probs=126.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.+++|++..+|.... +.... ....+....||-||..++. .. -..++-++|+.+++..++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~WsddgskVf~-g~--------~Dk~~k~wDL~S~Q~~~v~~Hd~p-- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWSDDGSKVFS-GG--------CDKQAKLWDLASGQVSQVAAHDAP-- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEccCCceEEe-ec--------cCCceEEEEccCCCeeeeeecccc--
Confidence 5899999976554332 22322 2346888999999965544 32 245677779999999888765554
Q ss_pred cccccceeEecCCe--EEEEEecCCCCC-CCC-CCCCCCCCceeeccCCceeeechhh-hhccCccccccccccccceEE
Q 002194 243 NAIFDNFVWVNNST--LLVCTIPLLRGD-PPK-KPLVPLGPKMQSNEKRDIIQVRTFQ-DLLKDEYDEDLFDYYATTQLV 317 (954)
Q Consensus 243 ~~~~~~~~wspDG~--~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~r~~~-d~l~~~~d~~~~~~~~~~~l~ 317 (954)
+..+.|-+... .|+.. .-.... ... ....|+ ..++ .+.|-|. |.+ ++ -...-.+..+|.
T Consensus 116 ---vkt~~wv~~~~~~cl~TG-SWDKTlKfWD~R~~~pv-~t~~-------LPeRvYa~Dv~-~p---m~vVata~r~i~ 179 (347)
T KOG0647|consen 116 ---VKTCHWVPGMNYQCLVTG-SWDKTLKFWDTRSSNPV-ATLQ-------LPERVYAADVL-YP---MAVVATAERHIA 179 (347)
T ss_pred ---eeEEEEecCCCcceeEec-ccccceeecccCCCCee-eeee-------ccceeeehhcc-Cc---eeEEEecCCcEE
Confidence 77888986654 33322 111110 000 000000 0000 0111111 110 00 011111456688
Q ss_pred EEEe-CC--ceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-e---EEEeccCCCcc
Q 002194 318 LVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-F---VRELCDLPLAE 388 (954)
Q Consensus 318 ~~~~-~G--~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~---~~~l~~~~~~~ 388 (954)
+++| ++ +.+++..+ -.++.++.-+|..-.+..+..+ .+.+..++.. . ..--++.. ..
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-------------rv~iq~id~~~~~~nFtFkCHR~-~~ 245 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-------------RVAIQYIDDPNPKDNFTFKCHRS-TN 245 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-------------eEEEEecCCCCccCceeEEEecc-CC
Confidence 8888 54 34455554 4556667667766666655332 4444444421 1 00001100 00
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccC
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDD 466 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spD 466 (954)
. .+..-..+.+++|.|.-..++-. +..+..-.||. + ...+.. ...+..+.--+|..+
T Consensus 246 ~----~~~~VYaVNsi~FhP~hgtlvTa-------------GsDGtf~FWDk---d-ar~kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 246 S----VNDDVYAVNSIAFHPVHGTLVTA-------------GSDGTFSFWDK---D-ARTKLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred C----CCCceEEecceEeecccceEEEe-------------cCCceEEEecc---h-hhhhhhccCcCCCccceeEecCC
Confidence 0 00111234678888855444333 44556667773 2 111222 234556677799999
Q ss_pred CceEEEEEecc
Q 002194 467 SLALVYESWYK 477 (954)
Q Consensus 467 g~~l~~~~~~~ 477 (954)
|..++|+...+
T Consensus 305 G~ifaYA~gYD 315 (347)
T KOG0647|consen 305 GSIFAYALGYD 315 (347)
T ss_pred CCEEEEEeecc
Confidence 99999987554
No 300
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.92 E-value=0.00043 Score=76.43 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
-+..++|-|||..|+....+ .++++|.+ || +....|.++. .
T Consensus 14 ci~d~afkPDGsqL~lAAg~----------------------------------rlliyD~n-dG--~llqtLKgHK--D 54 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS----------------------------------RLLVYDTS-DG--TLLQPLKGHK--D 54 (1081)
T ss_pred chheeEECCCCceEEEecCC----------------------------------EEEEEeCC-Cc--cccccccccc--c
Confidence 56689999999999998874 79999986 45 3444565543 3
Q ss_pred cccceeecCCCCeEEE
Q 002194 190 KLNFVTWSQDGKHLAF 205 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf 205 (954)
.+..++||-||++.|-
T Consensus 55 tVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 55 TVYCVAYAKDGKRFAS 70 (1081)
T ss_pred eEEEEEEccCCceecc
Confidence 6889999999998765
No 301
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.0064 Score=58.60 Aligned_cols=139 Identities=6% Similarity=-0.007 Sum_probs=77.5
Q ss_pred ccceEEEEEe-CCceeE-cCCC-ccc-cccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCC
Q 002194 312 ATTQLVLVSL-DGTVKE-IGPP-AVY-TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPL 386 (954)
Q Consensus 312 ~~~~l~~~~~-~G~~~~-l~~~-~~~-~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~ 386 (954)
+.-.||.-|. .|.... +... +.+ .-+.|+ |-.++..+ .+++|..||+.-. -++.+...-.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgs-------------qdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGS-------------QDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccC-------------CCceEEEEeeeccceeeeccCccc
Confidence 4456888888 665333 3332 322 233454 44444333 2348999998733 3344332211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeecc
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCD 465 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~sp 465 (954)
..... ...+.+++..|.|+.++-- .......++|+ .|+.. +....+..++..+.|||
T Consensus 226 ~~gle------ssavaav~vdpsgrll~sg-------------~~dssc~lydi---rg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 226 DGGLE------SSAVAAVAVDPSGRLLASG-------------HADSSCMLYDI---RGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred CCCcc------cceeEEEEECCCcceeeec-------------cCCCceEEEEe---eCCceeeeeCCCccceeEEEeCC
Confidence 11100 0123456777888754432 12334566775 45544 55567778889999999
Q ss_pred CCceEEEEEeccccceEEEEEcCCCC
Q 002194 466 DSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.-.+++..+.+. .|.+.|+++.
T Consensus 284 ~a~yllt~syd~----~ikltdlqgd 305 (350)
T KOG0641|consen 284 GAHYLLTCSYDM----KIKLTDLQGD 305 (350)
T ss_pred CceEEEEecccc----eEEEeecccc
Confidence 998888775443 4666677664
No 302
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.88 E-value=8.2e-05 Score=75.79 Aligned_cols=108 Identities=21% Similarity=0.178 Sum_probs=62.5
Q ss_pred HHHHHHHHHHH----HcCCCCCCcEEEEeeChHHHHHHHHHHhC--------CCcccEEEEeccCCCCCCCCCCCccccc
Q 002194 741 ACAEAAVEEVV----RRGVAHPSKIAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGAYNRTLTPFGFQNEDR 808 (954)
Q Consensus 741 ~D~~~av~~l~----~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~~~~~~~~~~~~~~~~ 808 (954)
.++..++++|. +++-. .+|+|+|.||.+|+.+++.. ...|+.+|.++++.-....
T Consensus 84 ~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------- 150 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------- 150 (212)
T ss_dssp ---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----------
T ss_pred cCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---------
Confidence 44444444444 34433 59999999999999888642 2358999999885321000
Q ss_pred hhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 809 TLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 809 ~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+.......++++|+|-++|.+|..++ .+.++++++.+... .+++.+++ ||.+-
T Consensus 151 -----------~~~~~~~~~i~iPtlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 151 -----------YQELYDEPKISIPTLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp -----------GTTTT--TT---EEEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred -----------hhhhhccccCCCCeEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 01111234578999999999999998 88999999998874 57777876 88873
No 303
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.88 E-value=0.0008 Score=71.02 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=88.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..++.....|.|+|++..+++. ..-..|.. |.....+.... . . -.+.+.+|.|||
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-------------~w~Fsd~~~g~~lt~vs~~~-s-~---------v~~ts~~fHpDg 359 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-------------TWAFSDISSGSQLTVVSDET-S-D---------VEYTSAAFHPDG 359 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-------------eEEEEEccCCcEEEEEeecc-c-c---------ceeEEeeEcCCc
Confidence 6778888999999999998664 22233444 33333333311 0 0 134578899999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
- +|..- ...+.|-+||+ ...........+.+.+..++||.+|-+|+.++++.. ..||.+.-..
T Consensus 360 L--ifgtg-----------t~d~~vkiwdl--ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~--V~lwDLRKl~ 422 (506)
T KOG0289|consen 360 L--IFGTG-----------TPDGVVKIWDL--KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS--VKLWDLRKLK 422 (506)
T ss_pred e--EEecc-----------CCCceEEEEEc--CCccccccCCCCCCceeEEEeccCceEEEEEecCCe--EEEEEehhhc
Confidence 4 44421 23557888886 333344555667788899999999999999987653 5555544222
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..+.+.-.....+.+ +.|...|++|+...
T Consensus 423 ---n~kt~~l~~~~~v~s------~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 423 ---NFKTIQLDEKKEVNS------LSFDQSGTYLGIAG 451 (506)
T ss_pred ---ccceeecccccccee------EEEcCCCCeEEeec
Confidence 222222221112222 77888888887764
No 304
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.88 E-value=0.0025 Score=71.27 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=53.0
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEe
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~ 475 (954)
++...+..++-||+|+.|+-...... .....|++|+. ..=.+...|..+...+..++|||||++|+..+.
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~--------~ehAvI~lw~t--~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSL--------KEHAVIRLWNT--ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCC--------ccceEEEEEec--cchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 33334567888999986665422211 22446888884 122344567788888999999999999998876
Q ss_pred ccccceEEEEE
Q 002194 476 YKTRRTRTWVI 486 (954)
Q Consensus 476 ~~~~~~~l~~~ 486 (954)
+.. ..||..
T Consensus 593 DRt--~sl~~~ 601 (764)
T KOG1063|consen 593 DRT--VSLYEV 601 (764)
T ss_pred Cce--EEeeee
Confidence 554 667766
No 305
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.00095 Score=71.60 Aligned_cols=243 Identities=13% Similarity=0.093 Sum_probs=140.6
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcccc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (954)
.+.|++..+- +..+.+..+. ..+....|-.||+.+|- ++....+-++|..+...-+.......
T Consensus 49 rvqly~~~~~---~~~k~~srFk--~~v~s~~fR~DG~Llaa---------GD~sG~V~vfD~k~r~iLR~~~ah~a--- 111 (487)
T KOG0310|consen 49 RVQLYSSVTR---SVRKTFSRFK--DVVYSVDFRSDGRLLAA---------GDESGHVKVFDMKSRVILRQLYAHQA--- 111 (487)
T ss_pred EEEEEecchh---hhhhhHHhhc--cceeEEEeecCCeEEEc---------cCCcCcEEEeccccHHHHHHHhhccC---
Confidence 4556555321 2223344444 34778888899998876 44566677777544333222222222
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-C
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~ 322 (954)
.+....|+|++..++.+..+. . -+-.+|+ +
T Consensus 112 -pv~~~~f~~~d~t~l~s~sDd----------------------------------------------~--v~k~~d~s~ 142 (487)
T KOG0310|consen 112 -PVHVTKFSPQDNTMLVSGSDD----------------------------------------------K--VVKYWDLST 142 (487)
T ss_pred -ceeEEEecccCCeEEEecCCC----------------------------------------------c--eEEEEEcCC
Confidence 266788999887777651110 1 1222344 3
Q ss_pred Ccee-EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccc
Q 002194 323 GTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVR 398 (954)
Q Consensus 323 G~~~-~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~--~~~~l~~~~~~~~~p~~~~~~~ 398 (954)
+... .+... ..+...+|+|-..+|+++.. |++.|.+||+... ....+...
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGs------------YDg~vrl~DtR~~~~~v~elnhg-------------- 196 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGS------------YDGKVRLWDTRSLTSRVVELNHG-------------- 196 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecC------------CCceEEEEEeccCCceeEEecCC--------------
Confidence 3321 23334 77889999999888888762 4669999999844 33333332
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCceEEEEEecc
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
..+.++-+-|.|..|+-. +.+.+-+||+ .+|++. .....+.-.+..+.+..|++.|+.++-+.
T Consensus 197 ~pVe~vl~lpsgs~iasA--------------gGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASA--------------GGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred CceeeEEEcCCCCEEEEc--------------CCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 123567788888866654 3457889996 335433 22234566678888888998888775432
Q ss_pred ccceEEEEEcCCCCCCCcEEEecCCCC-CccCCCCCCCeeeccCCcEEEEEE
Q 002194 478 TRRTRTWVISPGSKDVAPRILFDRSSE-DVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.++|. +.. -+.+..-... .+-+ +..|||+..++...
T Consensus 261 --~VKVfd--~t~----~Kvv~s~~~~~pvLs------iavs~dd~t~viGm 298 (487)
T KOG0310|consen 261 --HVKVFD--TTN----YKVVHSWKYPGPVLS------IAVSPDDQTVVIGM 298 (487)
T ss_pred --ceEEEE--ccc----eEEEEeeecccceee------EEecCCCceEEEec
Confidence 244444 332 2333221111 1112 67899999988876
No 306
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.87 E-value=0.00042 Score=70.40 Aligned_cols=104 Identities=11% Similarity=0.207 Sum_probs=65.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc-eeeeecCC-C
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFP-D 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~-~~~lt~~~-~ 187 (954)
+...-+|++|++.+|...+. .++-|+.... .. ......+. +
T Consensus 12 pitchAwn~drt~iAv~~~~---------------------------------~evhiy~~~~----~~~w~~~htls~H 54 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN---------------------------------HEVHIYSMLG----ADLWEPAHTLSEH 54 (361)
T ss_pred ceeeeeecCCCceEEeccCC---------------------------------ceEEEEEecC----CCCceeceehhhh
Confidence 45567899999999998764 3666776633 22 22222222 3
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEEC-CCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
...++.+-|+|.+.+|+.+.. ..+-|++.. ++++-.+..-. -.+|+....+.|+|.+..+++.
T Consensus 55 d~~vtgvdWap~snrIvtcs~---------drnayVw~~~~~~~WkptlvL--lRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 55 DKIVTGVDWAPKSNRIVTCSH---------DRNAYVWTQPSGGTWKPTLVL--LRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred CcceeEEeecCCCCceeEccC---------CCCccccccCCCCeeccceeE--EEeccceeeEeecCcCceEEec
Confidence 346788999999999998763 223344444 55544332111 1234446689999999988865
No 307
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.86 E-value=0.0012 Score=69.79 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=136.6
Q ss_pred ccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeecccc
Q 002194 134 LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAED 213 (954)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~ 213 (954)
+..+.+...+...+.+.+........+.+..|+||.+... ....+. .++...+....-.|.|++++.+++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----s~~~~~-~~h~~~V~~ls~h~tgeYllsAs~----- 323 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----SEPTSS-RPHEEPVTGLSLHPTGEYLLSASN----- 323 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----cCcccc-ccccccceeeeeccCCcEEEEecC-----
Confidence 3345556666667777777665555555678999988542 222221 234456788888899998888653
Q ss_pred CCCCceEEEEEECCCCce-eecccC-CCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceee
Q 002194 214 SSSSKLRVWVADVDTGKA-RPLFQS-PDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQ 291 (954)
Q Consensus 214 ~~~~~~~l~~~d~~~g~~-~~lt~~-~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (954)
....-..|..+|.. .++... .+.. +...+|.|||-++...+
T Consensus 324 ----d~~w~Fsd~~~g~~lt~vs~~~s~v~----~ts~~fHpDgLifgtgt----------------------------- 366 (506)
T KOG0289|consen 324 ----DGTWAFSDISSGSQLTVVSDETSDVE----YTSAAFHPDGLIFGTGT----------------------------- 366 (506)
T ss_pred ----CceEEEEEccCCcEEEEEeeccccce----eEEeeEcCCceEEeccC-----------------------------
Confidence 12222223334332 333221 1111 45888999996555320
Q ss_pred echhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcce
Q 002194 292 VRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQV 368 (954)
Q Consensus 292 ~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l 368 (954)
..+.|-++|+ ++ ....+... +.+..++||-+|-||+...++. .+
T Consensus 367 --------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------------~V 413 (506)
T KOG0289|consen 367 --------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------------SV 413 (506)
T ss_pred --------------------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------------eE
Confidence 2244666777 44 34444444 7888999999999999998553 59
Q ss_pred EEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCC
Q 002194 369 GVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG 447 (954)
Q Consensus 369 ~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 447 (954)
.+||+..- ..+.+.. .+. .++.++.|-+.|+.++.. +..-.||.+.- ...+
T Consensus 414 ~lwDLRKl~n~kt~~l---~~~---------~~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k---~~k~ 465 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQL---DEK---------KEVNSLSFDQSGTYLGIA-------------GSDLQVYICKK---KTKS 465 (506)
T ss_pred EEEEehhhcccceeec---ccc---------ccceeEEEcCCCCeEEee-------------cceeEEEEEec---cccc
Confidence 99999742 2222222 111 245678888888876655 22335565552 2223
Q ss_pred ceEE---eecccccCceeeccCCceEEEEEecc
Q 002194 448 PEIL---HKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 448 ~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
-+.+ ....+....+.|...-++++..+.+.
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchh
Confidence 2222 33334455677777777777665543
No 308
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.82 E-value=0.00033 Score=68.49 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=109.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
-+.+.+||-|.++|+.-... .-|+|++++.. ..+++.+.+.+ .
T Consensus 102 ivk~~af~~ds~~lltgg~e---------------------------------kllrvfdln~p--~App~E~~ght--g 144 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQE---------------------------------KLLRVFDLNRP--KAPPKEISGHT--G 144 (334)
T ss_pred eeeeEEecccchhhhccchH---------------------------------HHhhhhhccCC--CCCchhhcCCC--C
Confidence 36678888888888766553 24566666431 13455665554 3
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..+.|--..+.|+-.. . ...|.++|..+|...+-...+.. +.++..++||++|..+
T Consensus 145 ~Ir~v~wc~eD~~iLSSa-------d--d~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTia-------- 202 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSA-------D--DKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTIA-------- 202 (334)
T ss_pred cceeEEEeccCceEEeec-------c--CCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEEe--------
Confidence 588888987777887753 2 34555567777777665444433 6789999999988866
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--CCceeEcCCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~--~G~~~~l~~~~~~~~~~~SpDGk~l~ 347 (954)
..+.|-.+|. =|.++....+..+.+.+++|+-..++
T Consensus 203 ------------------------------------------~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 203 ------------------------------------------YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred ------------------------------------------cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 1122334444 24455555557788999999874443
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
... . ...++.+|-++++...... .+..+.+-.+.|||||.
T Consensus 241 aGg-e------------d~~~~kfDy~TgeEi~~~n-----------kgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 241 AGG-E------------DFKVYKFDYNTGEEIGSYN-----------KGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ecC-c------------ceEEEEEeccCCceeeecc-----------cCCCCceEEEEECCCCc
Confidence 332 1 1267777777665443310 12223456689999997
No 309
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.81 E-value=0.00079 Score=67.35 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=73.6
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCcee--ecccCCCccccccccceeEec--CCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~~~~wsp--DG~~l~~~~~~~ 265 (954)
.+..+.|-||++.|+-.. ..+|-+++++.+..+ .+...........+.+-+||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---- 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT---- 190 (370)
T ss_pred ceeeEEEcCCCCeeEEec----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe----
Confidence 678899999999999875 345666666654432 121111111112255788997 88888876
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC--ccccccccCC
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSP 341 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~--~~~~~~~~Sp 341 (954)
+.+.|+-+|+ +- +...|... ..+.++.|.|
T Consensus 191 ----------------------------------------------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 191 ----------------------------------------------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred ----------------------------------------------CCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 3345777777 32 33333332 5678899999
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
+-++++.+..+. +.+.+||..
T Consensus 225 nkq~~lvt~gDd------------gyvriWD~R 245 (370)
T KOG1007|consen 225 NKQHILVTCGDD------------GYVRIWDTR 245 (370)
T ss_pred CceEEEEEcCCC------------ccEEEEecc
Confidence 999998887553 378899987
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=0.0044 Score=70.68 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=112.0
Q ss_pred cccceeec-----CCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE--ecCCeEEEEEe
Q 002194 190 KLNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTI 262 (954)
Q Consensus 190 ~~~~~~wS-----PDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--spDG~~l~~~~ 262 (954)
...+|..| -||++| |+.+ ..+.+|-+++++.-+..+++..+...- +....+ .|+-.++++..
T Consensus 126 D~HHp~~s~t~g~ydGr~~-find-------k~n~Rvari~l~~~~~~~i~~iPn~~~---~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 126 DTHHPHMSFTDGTYDGRYL-FIND-------KANTRVARIRLDVMKCDKITELPNVQG---IHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred CcCCCcccccCCccceeEE-EEec-------CCCcceEEEECccEeeceeEeCCCccC---ccccCccccCCccEEEeCc
Confidence 45666666 477765 5553 347899999999888888877665321 223333 37777776541
Q ss_pred cCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCcccccccccc--ccceEEEEEe-CCc-eeEcCCCccccccc
Q 002194 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYY--ATTQLVLVSL-DGT-VKEIGPPAVYTSLD 338 (954)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~--~~~~l~~~~~-~G~-~~~l~~~~~~~~~~ 338 (954)
...- |. +++ +..+..+ ....+-.+|. +-+ ..++.-++.....+
T Consensus 195 e~~~---------Pl-----pnD-------------------Gk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~ 241 (635)
T PRK02888 195 EFRI---------PL-----PND-------------------GKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVD 241 (635)
T ss_pred cccc---------cc-----CCC-------------------CCEeecccceeEEEEEEECccceEEEEEEeCCCcccce
Confidence 1100 00 011 1000000 1233455666 332 33443345567789
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~ 418 (954)
++|||+++++++...+. ...+...+............. +.-.+.+||+...+.
T Consensus 242 ~spdGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni~----------------~iea~vkdGK~~~V~-- 294 (635)
T PRK02888 242 TDYDGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNIA----------------RIEEAVKAGKFKTIG-- 294 (635)
T ss_pred ECCCCCEEEEeccCccc---------CcceeeeccccCceEEEEchH----------------HHHHhhhCCCEEEEC--
Confidence 99999999998743221 113333333221111111100 112466788743321
Q ss_pred eccCCCccccccCCCeEEEEecCCCC----CCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 419 TQDGGDAKVEVTPRDIIYTQQAEPVQ----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~~~~~~~----g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.+.|-++|. .. +.+............++.+||||++++.+.... ..+-++|+..
T Consensus 295 -------------gn~V~VID~--~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS---~tVSVIDv~k 352 (635)
T PRK02888 295 -------------GSKVPVVDG--RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS---PTVTVIDVRK 352 (635)
T ss_pred -------------CCEEEEEEC--CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC---CcEEEEEChh
Confidence 346778884 22 123333334455677899999999998875443 3466777765
No 311
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.78 E-value=0.0027 Score=67.71 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=40.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+.||||++||+ +.....|.+++.++.+.++.+...... +.+++|-..-..+|.+
T Consensus 204 eil~~avS~Dgkylat---------gg~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLAT---------GGRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEe---------cCCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeee
Confidence 5667789999999999 334667778899999988875544332 5566665444444443
No 312
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.78 E-value=0.00043 Score=76.16 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred cCCCC-CCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCc--CCCcccHHHHHHHHHHHHHHh
Q 002194 826 ANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG--YAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 826 ~~~~~-~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~ 897 (954)
+++|+ +|+|.+-|+.|.+|| +.++..+.+.+...+ .+++.+..+++||. +.......+++..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 35678 999999999999999 999988888764443 34567778788996 345555678888999999763
No 313
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.77 E-value=0.00074 Score=70.66 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
...++++||||+.+||+... +. . ..|++... ++ ....+. .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~----------------------~~--~------~~L~~~~~--~~---~~~~~~---~g~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG----------------------DG--G------RSLYVGPA--GG---PVRPVL---TGG 66 (253)
T ss_pred cccceEECCCCCeEEEEEEc----------------------CC--C------CEEEEEcC--CC---cceeec---cCC
Confidence 56789999999999999821 00 0 26777654 22 233331 234
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
....|+|++||...++.. ++....++....++ +....+-..... +.+..+.+||||.++++.
T Consensus 67 ~l~~PS~d~~g~~W~v~~-------~~~~~~~~~~~~~g~~~~~~v~~~~~~---~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDD-------GSGGVRVVRDSASGTGEPVEVDWPGLR---GRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEEEc-------CCCceEEEEecCCCcceeEEecccccC---CceEEEEECCCCcEEEEE
Confidence 688999999975444422 22233333322222 222333222111 127799999999999988
No 314
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.77 E-value=0.0011 Score=68.86 Aligned_cols=280 Identities=11% Similarity=0.133 Sum_probs=157.1
Q ss_pred CCCChhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCcccccccccee-----------eeeeecCCCCCCcceeeEec
Q 002194 96 RLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKL-----------AGLRIDGKCNTRSRMSFYTG 164 (954)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 164 (954)
-.+|+++..++...+++++..+ +++|+..+.++...++++.+-..++ .-+..+........++.+..
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 4577778888888899999998 8899999888887888777655554 11222222222223333355
Q ss_pred eEEEEccCCCCCCceeee-ecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEE--EECCC-------------
Q 002194 165 IGIHQLFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV--ADVDT------------- 228 (954)
Q Consensus 165 l~l~~~~~~g~~~~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~--~d~~~------------- 228 (954)
|.+|..+.+......... .+ +...+..++-.+||.+++-.+ -+....||- .+.++
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~G--Hk~~V~sVsv~~sgtr~~SgS-------~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRG--HKRSVDSVSVDSSGTRFCSGS-------WDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEEEecCchhhhhHHhHhcc--cccceeEEEecCCCCeEEeec-------ccceeeecccCCCccccccccchhhhhhh
Confidence 666666432100011111 12 223677778889998877644 222444444 11110
Q ss_pred ------CceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCc
Q 002194 229 ------GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDE 302 (954)
Q Consensus 229 ------g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~ 302 (954)
+...+++... +....+..+.|++ ...++..+
T Consensus 242 ~~~~~~~~r~P~vtl~--GHt~~Vs~V~w~d-~~v~yS~S---------------------------------------- 278 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLE--GHTEPVSSVVWSD-ATVIYSVS---------------------------------------- 278 (423)
T ss_pred hhhhcccccCceEEec--ccccceeeEEEcC-CCceEeec----------------------------------------
Confidence 1111111111 1122356778876 33444330
Q ss_pred cccccccccccceEEEEEe-C-CceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEE
Q 002194 303 YDEDLFDYYATTQLVLVSL-D-GTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (954)
Q Consensus 303 ~d~~~~~~~~~~~l~~~~~-~-G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~ 380 (954)
..-.|..+|+ + |....++.+.....++.+|+-+.|+..+.++ .+.+||...+.-..
T Consensus 279 ---------wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr-------------~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 279 ---------WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR-------------HIRLWDPRTGDGSV 336 (423)
T ss_pred ---------ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC-------------ceeecCCCCCCCce
Confidence 1123667787 4 5666777777788899999999888877443 78899987432111
Q ss_pred eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCc
Q 002194 381 LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG 460 (954)
Q Consensus 381 l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~ 460 (954)
+.. .+.++...+.++.|+|-...++... +..+.+.+||+ -...+....|..+...+-.
T Consensus 337 v~~---------s~~gH~nwVssvkwsp~~~~~~~S~------------S~D~t~klWDv-RS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 337 VSQ---------SLIGHKNWVSSVKWSPTNEFQLVSG------------SYDNTVKLWDV-RSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred eEE---------eeecchhhhhheecCCCCceEEEEE------------ecCCeEEEEEe-ccCCCcceeeccCCceEEE
Confidence 110 1123335667899999888665541 33456777775 1122344566666666666
Q ss_pred eeeccCCceEEEEE
Q 002194 461 ISWCDDSLALVYES 474 (954)
Q Consensus 461 ~~~spDg~~l~~~~ 474 (954)
+.|. +|..|+...
T Consensus 395 vdW~-~~~~IvSGG 407 (423)
T KOG0313|consen 395 VDWN-EGGLIVSGG 407 (423)
T ss_pred Eecc-CCceEEecc
Confidence 7775 344455543
No 315
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.77 E-value=7e-05 Score=62.15 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=55.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCC
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (954)
|.+|....|.|+. . +..+|+++||.. .........+..|+++||.|+. .|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 6789999999875 1 468999999942 2223345678889999999999 78889999
Q ss_pred cccch---hhHHHHHHHHHHHH
Q 002194 729 EEAND---RFVEQLVACAEAAV 747 (954)
Q Consensus 729 ~~~~~---~~~~~~~~D~~~av 747 (954)
|.... ..+...++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 87532 33566777777654
No 316
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.76 E-value=0.0026 Score=66.54 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=42.7
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
....+++||||+.+||+.. .++...||+...++. .+.+..... +..+.|+++|...++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~~~~-~~~~~~g~~------l~~PS~d~~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPAGGP-VRPVLTGGS------LTRPSWDPDGWVWTVD 83 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcCCCc-ceeeccCCc------cccccccCCCCEEEEE
Confidence 6889999999999999872 456889999986554 344332222 6789999997655543
No 317
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.76 E-value=0.036 Score=68.59 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=52.6
Q ss_pred EEEEEeCCceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcc
Q 002194 316 LVLVSLDGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIA 393 (954)
Q Consensus 316 l~~~~~~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~ 393 (954)
|-+++-+|+..-..++ +--..++|-|.|.+||.+... +. ..+|..+.-+|-......-...
T Consensus 239 iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~---------~~~VvFfErNGLrhgeF~l~~~------- 301 (928)
T PF04762_consen 239 IRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PD---------RHDVVFFERNGLRHGEFTLRFD------- 301 (928)
T ss_pred EEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEc-CC---------CcEEEEEecCCcEeeeEecCCC-------
Confidence 4444446776666665 445678999999999998842 21 1267777777644333222110
Q ss_pred ccccccCccceeeccCCCCceEEE
Q 002194 394 FNSVRKGMRSINWRSDKPSTLYWA 417 (954)
Q Consensus 394 ~~~~~~g~~~~~wspDg~~i~~~~ 417 (954)
.....+..+.|++|+..++.+.
T Consensus 302 --~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 302 --PEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred --CCCceeeEEEECCCCCEEEEEe
Confidence 0112346799999999998883
No 318
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.75 E-value=0.0012 Score=72.98 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=43.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
-+...+|-|||..|+... +..|+++|+..|..-+-....... +.-++||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA----------g~rlliyD~ndG~llqtLKgHKDt----VycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----------GSRLLVYDTSDGTLLQPLKGHKDT----VYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec----------CCEEEEEeCCCcccccccccccce----EEEEEEccCCceeccC
Confidence 578899999999999876 578999999766544333333322 6789999999998854
No 319
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.75 E-value=0.0013 Score=72.43 Aligned_cols=139 Identities=15% Similarity=0.193 Sum_probs=80.9
Q ss_pred ccceEEEEEeCCceeE-------cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEec
Q 002194 312 ATTQLVLVSLDGTVKE-------IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELC 382 (954)
Q Consensus 312 ~~~~l~~~~~~G~~~~-------l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~ 382 (954)
+.-.||++..+|-.+. |+.+ ..+.++.|.|=-.-++.+ ..++.+|.+||+..... -.+.
T Consensus 650 g~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~------------asyd~Ti~lWDl~~~~~~~~l~ 717 (1012)
T KOG1445|consen 650 GQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV------------ASYDSTIELWDLANAKLYSRLV 717 (1012)
T ss_pred ceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh------------hhccceeeeeehhhhhhhheec
Confidence 4456888877442222 2222 445566666632222221 12345899999985432 2333
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCc
Q 002194 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGG 460 (954)
Q Consensus 383 ~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~ 460 (954)
.+ ..++.+++|||||++++-. ...+.|++++ |..+.++..-..+ ..+-..
T Consensus 718 gH-------------tdqIf~~AWSpdGr~~AtV-------------cKDg~~rVy~--Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 718 GH-------------TDQIFGIAWSPDGRRIATV-------------CKDGTLRVYE--PRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred cC-------------cCceeEEEECCCCcceeee-------------ecCceEEEeC--CCCCCCccccCCCCccCccee
Confidence 32 2456789999999998876 3356788887 3444433222111 223345
Q ss_pred eeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 461 ISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 461 ~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+.|.=||+.|+....++..+.+|-.++.++
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 899999999998876665444455555544
No 320
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.74 E-value=0.00049 Score=75.90 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCC-cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCC
Q 002194 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (954)
Q Consensus 754 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P 832 (954)
+.....+|.|+|+|||+.+++++...+.+ .+.|+||+.-.++...-+.+. +-+.+..++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 44455689999999999888888776543 477888876444322111111 11223346899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 833 ~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
+||+.|.+|..|+ ++..+++.++++.. ++++++.+++|.+.
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA~---~elhVI~~adhsma 347 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQAE---VELHVIGGADHSMA 347 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhcc---ceEEEecCCCcccc
Confidence 9999999999998 88888888888765 79999999999874
No 321
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00063 Score=71.76 Aligned_cols=73 Identities=12% Similarity=-0.060 Sum_probs=47.4
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEecc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
++.+++.|+||+.++.- ...+.|-++++ ..=+..++ ..+..-+..+.|+||.++++-.+.+.
T Consensus 283 siSsl~VS~dGkf~AlG-------------T~dGsVai~~~---~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALG-------------TMDGSVAIYDA---KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cceeEEEcCCCcEEEEe-------------ccCCcEEEEEe---ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 55789999999988776 22345666664 22122222 23455678899999999998865544
Q ss_pred ccceEEEEEcCCC
Q 002194 478 TRRTRTWVISPGS 490 (954)
Q Consensus 478 ~~~~~l~~~d~~~ 490 (954)
+ .+|..+..+.
T Consensus 347 ~--~~v~~l~vd~ 357 (398)
T KOG0771|consen 347 E--AAVTKLAVDK 357 (398)
T ss_pred c--eeEEEEeecc
Confidence 3 6677766654
No 322
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.73 E-value=0.00053 Score=71.47 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=80.5
Q ss_pred ceEEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCC-CcccHHHHHHH-HCCcEE
Q 002194 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWL-ARGFAI 715 (954)
Q Consensus 638 ~~~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la-~~G~~V 715 (954)
..+++.+.. |+..|.+....-+...+ ---|+++-|... .... ... .+.......++ ..|..|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~-----~RWiL~s~GNg~-------~~E~---~~~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKP-----QRWILVSNGNGE-------CYEN---RAMLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCC-----CcEEEEEcCChH-------Hhhh---hhhhccccHHHHHHHHHcCCcE
Confidence 457777775 88999887765222222 345777766321 1110 000 00111233333 478999
Q ss_pred EEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
+. +.++|.|.|.+... ...++.|..++++||+++. .+.+++|.+.|||.||.+++.++...
T Consensus 175 l~---fNYpGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LV---FNYPGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EE---ECCCccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 99 55567777766655 4889999999999999854 47889999999999999988866554
No 323
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.0058 Score=58.88 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=64.8
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~ 412 (954)
.+..++..|.|+.|+....+ ....+||+.|+...+-.. | ....++.+.|||..-+
T Consensus 233 avaav~vdpsgrll~sg~~d-------------ssc~lydirg~r~iq~f~-p-----------hsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHAD-------------SSCMLYDIRGGRMIQRFH-P-----------HSADIRCVRFSPGAHY 287 (350)
T ss_pred eeEEEEECCCcceeeeccCC-------------CceEEEEeeCCceeeeeC-C-----------CccceeEEEeCCCceE
Confidence 34567889999988765532 256789999876543222 1 1134578899995532
Q ss_pred ceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-----eecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-----HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
++-- +....|.+-|+ .|.-..+| ..+....-...|.|..-.++.++.+++ ..||.++
T Consensus 288 llt~-------------syd~~ikltdl---qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTC-------------SYDMKIKLTDL---QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWALN 349 (350)
T ss_pred EEEe-------------cccceEEEeec---ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEeccC
Confidence 2211 33446666664 44333222 333444456788887766555544443 5677654
No 324
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.70 E-value=0.0026 Score=61.92 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
.+.++.|.-||++.+....+ ..+.+|+... | . .|.... +|
T Consensus 19 aV~avryN~dGnY~ltcGsd---------------------------------rtvrLWNp~r-g---~--liktYsghG 59 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSD---------------------------------RTVRLWNPLR-G---A--LIKTYSGHG 59 (307)
T ss_pred ceEEEEEccCCCEEEEcCCC---------------------------------ceEEeecccc-c---c--eeeeecCCC
Confidence 45677888899988887765 4788998632 2 2 222221 34
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
..+....-|.|...++- ..+...++++|+++|+..+-....... ++.++|..+...++..
T Consensus 60 ~EVlD~~~s~Dnskf~s---------~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFAS---------CGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASG 119 (307)
T ss_pred ceeeecccccccccccc---------CCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEec
Confidence 47888888889988776 446788999999998875544444333 6778888777766654
No 325
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.69 E-value=0.0013 Score=70.51 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=120.2
Q ss_pred cCCCChhHHHhhcCC--CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC
Q 002194 95 YRLPPPEIREIVDAP--PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (954)
Q Consensus 95 ~~~~~~~~~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 172 (954)
+...+..|...+.+. ++....|+|++.+++....+ + .-+.+|++++
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD----------------------d----------~v~k~~d~s~ 142 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD----------------------D----------KVVKYWDLST 142 (487)
T ss_pred eccccHHHHHHHhhccCceeEEEecccCCeEEEecCC----------------------C----------ceEEEEEcCC
Confidence 334444455555442 35567899999888776654 1 2456777743
Q ss_pred CCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeE
Q 002194 173 DGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (954)
Q Consensus 173 ~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (954)
... ..|.++ ..++....|+|-..+|+++.. -++...||-....+ .+.+.-..+.. ++.+.+
T Consensus 143 ----a~v~~~l~~h--tDYVR~g~~~~~~~hivvtGs------YDg~vrl~DtR~~~--~~v~elnhg~p----Ve~vl~ 204 (487)
T KOG0310|consen 143 ----AYVQAELSGH--TDYVRCGDISPANDHIVVTGS------YDGKVRLWDTRSLT--SRVVELNHGCP----VESVLA 204 (487)
T ss_pred ----cEEEEEecCC--cceeEeeccccCCCeEEEecC------CCceEEEEEeccCC--ceeEEecCCCc----eeeEEE
Confidence 222 123332 248999999999999999632 34455555444333 33333222222 778889
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEc
Q 002194 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEI 328 (954)
Q Consensus 252 spDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l 328 (954)
-|.|..|+.+ +..++-++|+ +|. +...
T Consensus 205 lpsgs~iasA--------------------------------------------------gGn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 205 LPSGSLIASA--------------------------------------------------GGNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cCCCCEEEEc--------------------------------------------------CCCeEEEEEecCCceehhhh
Confidence 9999999866 4455778888 452 2333
Q ss_pred CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeec
Q 002194 329 GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 329 ~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ws 407 (954)
.+. ..++...+..|+.+|+..+.++ .+.++|+..- +.+.... .++.+-+++.|
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd~t~~--Kvv~s~~-----------~~~pvLsiavs 288 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFDTTNY--KVVHSWK-----------YPGPVLSIAVS 288 (487)
T ss_pred hcccceEEEEEeecCCceEeeccccc-------------ceEEEEccce--EEEEeee-----------cccceeeEEec
Confidence 333 7788999999999998887543 7888885432 2222211 12345678888
Q ss_pred cCCCCceEE
Q 002194 408 SDKPSTLYW 416 (954)
Q Consensus 408 pDg~~i~~~ 416 (954)
||++.++.-
T Consensus 289 ~dd~t~viG 297 (487)
T KOG0310|consen 289 PDDQTVVIG 297 (487)
T ss_pred CCCceEEEe
Confidence 888765543
No 326
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.68 E-value=0.00026 Score=83.83 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=64.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccc-----------------
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----------------- 732 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----------------- 732 (954)
.|+||++||.... ......++..|+++||.|++ .+.+|||.+...
T Consensus 449 ~P~VVllHG~~g~---------------~~~~~~lA~~La~~Gy~VIa---iDlpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITGA---------------KENALAFAGTLAAAGVATIA---IDHPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCCC---------------HHHHHHHHHHHHhCCcEEEE---eCCCCCCccccccccccccccccCcccee
Confidence 6899999994211 00112456677889999999 566666666211
Q ss_pred --------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 733 --------DRFVEQLVACAEAAVEEVV------RR----GVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 733 --------~~~~~~~~~D~~~av~~l~------~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
++.+.+.+.|+......|. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1234677889888888776 21 125567999999999999999998764
No 327
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.02 Score=66.09 Aligned_cols=248 Identities=15% Similarity=0.214 Sum_probs=140.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC-CC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~-~~ 188 (954)
++-+++|.|-.-+|+.+-.. +.|.+||..= | +.|..+. +.
T Consensus 11 RvKglsFHP~rPwILtslHs---------------------------------G~IQlWDYRM-~-----tli~rFdeHd 51 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS---------------------------------GVIQLWDYRM-G-----TLIDRFDEHD 51 (1202)
T ss_pred cccceecCCCCCEEEEeecC---------------------------------ceeeeehhhh-h-----hHHhhhhccC
Confidence 57789999999999887653 4677777632 1 1122222 33
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC-ccccccccceeEecCCeEEEEEecCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD-IYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
+.+..+.|.|++- +|++. +++....+|-+. .. |-+...-+ ..+ +..+.|.+.=-+|..+
T Consensus 52 GpVRgv~FH~~qp--lFVSG-----GDDykIkVWnYk--~r--rclftL~GHlDY---VRt~~FHheyPWIlSA------ 111 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQP--LFVSG-----GDDYKIKVWNYK--TR--RCLFTLLGHLDY---VRTVFFHHEYPWILSA------ 111 (1202)
T ss_pred CccceeeecCCCC--eEEec-----CCccEEEEEecc--cc--eehhhhccccce---eEEeeccCCCceEEEc------
Confidence 4789999999876 45542 234444555443 32 22222111 111 5567777777777755
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk 344 (954)
+. ...|.+++- ++ .+..++.. ..+....|.|-..
T Consensus 112 ---------------SD----------------------------DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 112 ---------------SD----------------------------DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred ---------------cC----------------------------CCeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 11 122444454 44 45556655 6778889999888
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcc---------c--------CCccccccccCccceeec
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE---------D--------IPIAFNSVRKGMRSINWR 407 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~---------~--------~p~~~~~~~~g~~~~~ws 407 (954)
.|+..|. +++|.+||+.|-..+........+ + +-....++--|+...+|.
T Consensus 149 lIVSaSL-------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 149 LIVSASL-------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEecc-------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 8888773 458999999874433333221000 0 001234455566667777
Q ss_pred cCCCCceEEEEeccCCCccccccCC-CeEEEEecCCCCCCCc--eEEeecccccCceeeccCCceEEEEEeccccceEEE
Q 002194 408 SDKPSTLYWAETQDGGDAKVEVTPR-DIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (954)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~g~~~--~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~ 484 (954)
|.-..|+-- + +.+ -.+|.++ ++..- ....++-..+.++.|.|....|+..+.++. .++|
T Consensus 216 pTlpliVSG------~------DDRqVKlWrmn----etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks--irVw 277 (1202)
T KOG0292|consen 216 PTLPLIVSG------A------DDRQVKLWRMN----ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS--IRVW 277 (1202)
T ss_pred CCcceEEec------C------CcceeeEEEec----cccceeehhhhcccCCcceEEecCccceeEecCCCcc--EEEE
Confidence 754432221 0 111 1456655 22221 122355667889999998887877766654 6677
Q ss_pred EEcCCC
Q 002194 485 VISPGS 490 (954)
Q Consensus 485 ~~d~~~ 490 (954)
.++-.+
T Consensus 278 Dm~kRt 283 (1202)
T KOG0292|consen 278 DMTKRT 283 (1202)
T ss_pred eccccc
Confidence 665544
No 328
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.025 Score=60.52 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=35.2
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
..||+++. ++..+.+... ....+++|||||+.++++-... +.|+.++.+
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~------------~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA------------NRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC------------CeEEEEecC
Confidence 46999997 4556666664 6667899999999888876332 266677665
No 329
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00091 Score=73.33 Aligned_cols=121 Identities=9% Similarity=0.158 Sum_probs=69.1
Q ss_pred cceEEEEEeCCceeEcCC--C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcc
Q 002194 313 TTQLVLVSLDGTVKEIGP--P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAE 388 (954)
Q Consensus 313 ~~~l~~~~~~G~~~~l~~--~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~ 388 (954)
...+++..++....+..- . +.+..+.|.|---++++.+.+ .+.+||+...+. +.+...-
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~tg~--- 607 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLLTGS--- 607 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHhcCC---
Confidence 345666677443333322 2 667788999988888777633 788999875322 2222110
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceee-----
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW----- 463 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~----- 463 (954)
..+..++.+|.|..|+.. +....+..+|+ .+.+...+.|.-+...+.+++|
T Consensus 608 ----------kwiS~msihp~GDnli~g-------------s~d~k~~WfDl-dlsskPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 608 ----------KWISSMSIHPNGDNLILG-------------SYDKKMCWFDL-DLSSKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred ----------eeeeeeeecCCCCeEEEe-------------cCCCeeEEEEc-ccCcchhHHhhhhhhhhhhhhhccccc
Confidence 233567888988888776 34556777776 2333333444333333444433
Q ss_pred -----ccCCceEEEEE
Q 002194 464 -----CDDSLALVYES 474 (954)
Q Consensus 464 -----spDg~~l~~~~ 474 (954)
|+||..++|-.
T Consensus 664 Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeecCCCcEEEEee
Confidence 56677666654
No 330
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.62 E-value=0.037 Score=68.55 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=62.9
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
+...++|..||+.++...-.... +.+..+.+|+- +| +..-.. ..++-...++|.|.|..|+......+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-------~~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-------GSRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-------CceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 44569999999977765221111 12457778873 33 222221 22333456899999999988875333
Q ss_pred cceEEEEEcCCCCCCCcEEE-ecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 479 RRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
...|..+.-+|-....-.+ .+.....+.. +.|++|+..|+...
T Consensus 280 -~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 280 -RHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred -CcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 3566666666521100111 1111112222 89999999999876
No 331
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.62 E-value=0.0018 Score=60.89 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=77.3
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEE
Q 002194 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~ 837 (954)
++.+++++||.|+.+++.++.+....++++++++|+---... ..+.....++|+ ...++.-|.++++
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~------------~~~~~~~tf~~~-p~~~lpfps~vva 124 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE------------IRPKHLMTFDPI-PREPLPFPSVVVA 124 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc------------cchhhccccCCC-ccccCCCceeEEE
Confidence 456999999999999999998876789999999985210000 000111122221 1233456899999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC--CcccHHHHHHHHHHHHH
Q 002194 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQ 895 (954)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~ 895 (954)
+.+|+.|+ ++++..+.++... .++....+||... ......+.+..+.+|+.
T Consensus 125 SrnDp~~~--~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 125 SRNDPYVS--YEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred ecCCCCCC--HHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 99999999 9999999887753 5666777888642 22233344444444443
No 332
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.61 E-value=0.0022 Score=70.38 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=41.0
Q ss_pred cCCCCCCEEEEEeCCCCCCCCchHHHHHHH-------HHHHhCCCcEEEEEeCCCCCcC
Q 002194 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFF-------NALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 826 ~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~-------~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
+++|++|+.+++|..|.+.| +.|+..+. +.++..|..+-+.+.+..||.-
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLG 349 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLG 349 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceE
Confidence 46789999999999999998 99986554 4456677778888889999964
No 333
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.59 E-value=0.0079 Score=65.49 Aligned_cols=70 Identities=7% Similarity=0.020 Sum_probs=46.7
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEe-ecccccCceeeccCCceEEEEEeccc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~-~~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
.+..+.|||||+.++.. +.++-|.+++. +..+..-+. ..-+..--+.||||||+|+...+++-
T Consensus 292 ~in~f~FS~DG~~LA~V-------------SqDGfLRvF~f---dt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL 355 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATV-------------SQDGFLRIFDF---DTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL 355 (636)
T ss_pred cccceeEcCCCceEEEE-------------ecCceEEEeec---cHHHHHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence 55779999999998887 45666777774 433222111 11223345899999999999877664
Q ss_pred cceEEEEEc
Q 002194 479 RRTRTWVIS 487 (954)
Q Consensus 479 ~~~~l~~~d 487 (954)
..+|.+.
T Consensus 356 --VtVwSf~ 362 (636)
T KOG2394|consen 356 --VTVWSFE 362 (636)
T ss_pred --EEEEEec
Confidence 5667664
No 334
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.58 E-value=0.00082 Score=71.98 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
.....++++|..|+.. +..+-........+-....+++..+++.+++.-. .++|-++|+|.||.+...+++..+.
T Consensus 130 s~V~~l~~~g~~vfvI---sw~nPd~~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVI---SWRNPDASLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEE---eccCchHhhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 4577889999999983 2222222333344545666888899999988743 2589999999999999999998877
Q ss_pred c-ccEEEEeccCCC
Q 002194 783 L-FCCGIARSGAYN 795 (954)
Q Consensus 783 ~-~~a~v~~~~~~~ 795 (954)
+ ++.+.......|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 777776665444
No 335
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.55 E-value=0.0054 Score=65.94 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=93.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..++.+.+.-...+||..+.. ++|.|..+.++.. .+++...+ ..++-+.|||-.
T Consensus 122 stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~sg------------qsvRll~ys~sk 176 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTIDSG------------QSVRLLRYSPSK 176 (673)
T ss_pred ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecCCC------------CeEEEeeccccc
Confidence 445555666667788887733 3777777775542 22332111 234678899988
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce--EEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~--~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+.++.. ++..+.|.+||+ +|..+. ....+.....++.|||-...|+.+...+ .+|+++|.
T Consensus 177 r~lL~~------------asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D---kki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSI------------ASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD---KKINIYDI 238 (673)
T ss_pred ceeeEe------------eccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEeccc---ceEEEeec
Confidence 766654 144668999996 554432 2245566778999999988887776655 46888887
Q ss_pred CCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
........+..+.+... ++|+++|.+|+...
T Consensus 239 ~s~~s~~~l~y~~Plst---------vaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLST---------VAFSECGTYLCAGN 269 (673)
T ss_pred ccccccceeeecCCcce---------eeecCCceEEEeec
Confidence 76433333444444433 88999999988775
No 336
>PRK04940 hypothetical protein; Provisional
Probab=97.50 E-value=0.00093 Score=64.26 Aligned_cols=116 Identities=9% Similarity=0.052 Sum_probs=71.4
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCC---CCCccccchhhhcHHHHHhcCcccccCCCCCCEEE
Q 002194 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP---FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (954)
Q Consensus 759 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Li 835 (954)
++++|+|.|+||+.|.+++.++ . + .+|+++|.+.....- .+.+. +...+ ..+...+.. .+-.-..++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~-g-~-~aVLiNPAv~P~~~L~~~ig~~~-~y~~~-~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC-G-I-RQVIFNPNLFPEENMEGKIDRPE-EYADI-ATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH-C-C-CEEEECCCCChHHHHHHHhCCCc-chhhh-hHHHHHHhh-----hcCcccEEE
Confidence 4699999999999999999998 3 4 456667765532110 01111 11111 111111111 111234699
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHH
Q 002194 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (954)
Q Consensus 836 i~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (954)
+..+.|++.+ +.++.+.|... .+..+.+|.+|.|... ++.+..|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 9999999988 77766655432 2577899999998643 566788888874
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.50 E-value=0.068 Score=61.33 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred eEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 326 KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 326 ~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
..|.-+....++.+||||++++.+.... .++.++|++.
T Consensus 315 ~yIPVGKsPHGV~vSPDGkylyVanklS------------~tVSVIDv~k 352 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGKYFIANGKLS------------PTVTVIDVRK 352 (635)
T ss_pred EEEECCCCccceEECCCCCEEEEeCCCC------------CcEEEEEChh
Confidence 3344446677899999999999887443 3788888874
No 338
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.48 E-value=0.0037 Score=60.89 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=121.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+..+.+.-||++.+....++ .+.+|+.-.+ -++....+. ..+...+-+.|.
T Consensus 18 gaV~avryN~dGnY~ltcGsdr-------------tvrLWNp~rg~liktYsghG-------------~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDR-------------TVRLWNPLRGALIKTYSGHG-------------HEVLDAALSSDN 71 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCc-------------eEEeecccccceeeeecCCC-------------ceeeeccccccc
Confidence 4566677888999988776443 8899987744 445444332 123455666666
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.+++-- ++...+++||+ .+|...+++..+...++.+.|..+...++..+.+.. .++|.-....
T Consensus 72 skf~s~-------------GgDk~v~vwDV--~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--~r~wDCRS~s 134 (307)
T KOG0316|consen 72 SKFASC-------------GGDKAVQVWDV--NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS--VRLWDCRSRS 134 (307)
T ss_pred cccccC-------------CCCceEEEEEc--ccCeeeeecccccceeeEEEecCcceEEEeccccce--eEEEEcccCC
Confidence 655433 34557899997 455566888888899999999888776665554433 5666555444
Q ss_pred CCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEecc
Q 002194 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (954)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 570 (954)
.+|.++.+.....+.+ .--.+..|+..+. ...+..||+.-|... .
T Consensus 135 --~ePiQildea~D~V~S--------i~v~~heIvaGS~---------------------DGtvRtydiR~G~l~---s- 179 (307)
T KOG0316|consen 135 --FEPIQILDEAKDGVSS--------IDVAEHEIVAGSV---------------------DGTVRTYDIRKGTLS---S- 179 (307)
T ss_pred --CCccchhhhhcCceeE--------EEecccEEEeecc---------------------CCcEEEEEeecceee---h-
Confidence 5777776654433221 2222333333331 123777887665421 1
Q ss_pred CcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
+|+..... ..+||+|++-.+...-. ..+.++|-.+|+.
T Consensus 180 ---Dy~g~pit------~vs~s~d~nc~La~~l~----stlrLlDk~tGkl 217 (307)
T KOG0316|consen 180 ---DYFGHPIT------SVSFSKDGNCSLASSLD----STLRLLDKETGKL 217 (307)
T ss_pred ---hhcCCcce------eEEecCCCCEEEEeecc----ceeeecccchhHH
Confidence 12222111 25699999987765543 4588988777764
No 339
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.45 E-value=0.0013 Score=68.04 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-----CcccEEEEeccCCCCCCCCCCCc-----cc
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTPFGFQ-----NE 806 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~~~~~-----~~ 806 (954)
.....=+..++.+|.++..+ +++-++||||||..++.++..+. ..+.-.|++++.++......... ..
T Consensus 83 ~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~ 160 (255)
T PF06028_consen 83 KKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNK 160 (255)
T ss_dssp HHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CST
T ss_pred HHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcc
Confidence 34455677889999998766 59999999999999999988752 14788899988887543211000 00
Q ss_pred cchhhhcHHHHHhcCcccccCCC--CCCEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCCc
Q 002194 807 DRTLWEATSTYVEMSPFMSANKL--KKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHG 876 (954)
Q Consensus 807 ~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~ 876 (954)
.+ +-.....|...-... -.++ ...+|-|.|. .|.+|| ...++.+...++...+.++-.++.| +.|.
T Consensus 161 ~g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS 236 (255)
T PF06028_consen 161 NG-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQHS 236 (255)
T ss_dssp T--BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSCC
T ss_pred cC-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCccc
Confidence 11 111112222111000 0122 3569999998 899998 8888888888877777788888876 5787
Q ss_pred CCCcccHHHHHHHHHHHH
Q 002194 877 YAARESIMHVLWETDRWL 894 (954)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl 894 (954)
-. .++ ..+.+.|.+||
T Consensus 237 ~L-heN-~~V~~~I~~FL 252 (255)
T PF06028_consen 237 QL-HEN-PQVDKLIIQFL 252 (255)
T ss_dssp GG-GCC-HHHHHHHHHHH
T ss_pred cC-CCC-HHHHHHHHHHh
Confidence 53 333 45567777776
No 340
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.45 E-value=0.0014 Score=67.60 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=94.0
Q ss_pred EEEEEe--CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCC
Q 002194 316 LVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIP 391 (954)
Q Consensus 316 l~~~~~--~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p 391 (954)
|-++|. +-..+.+..+ ..+..+.|+|-...|+.+... +..|.|||+....+ +.+...
T Consensus 169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s------------DrsIvLyD~R~~~Pl~KVi~~------- 229 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS------------DRSIVLYDLRQASPLKKVILT------- 229 (433)
T ss_pred eeecccccCCccceeecCCCceeEEecCCCcchheeeecc------------CCceEEEecccCCccceeeee-------
Confidence 334444 4455556555 667788899987777665522 23799999985432 333221
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeecccccCceeeccCCceE
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spDg~~l 470 (954)
-....++|+|.+ ..|.+. ++...+|.+|+-.+. .+. ...++-..+.++.|||-|+.+
T Consensus 230 -------mRTN~IswnPea--fnF~~a-----------~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 230 -------MRTNTICWNPEA--FNFVAA-----------NEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred -------ccccceecCccc--cceeec-----------cccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchh
Confidence 123468999933 344311 334578888851111 111 112334456789999999999
Q ss_pred EEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+.++.++. .+||-++ .+. ...+......+.++. +.||-|.++|+..+
T Consensus 288 vsgsyDks--IRIf~~~--~~~-SRdiYhtkRMq~V~~------Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 288 VSGSYDKS--IRIFPVN--HGH-SRDIYHTKRMQHVFC------VKYSMDSKYIISGS 334 (433)
T ss_pred ccccccce--EEEeecC--CCc-chhhhhHhhhheeeE------EEEeccccEEEecC
Confidence 99887765 5555544 331 111222223333444 78999999988766
No 341
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.44 E-value=0.002 Score=67.94 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=65.0
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH---CCcEEEEcCCCCCCCCCCcccc-----h-hh--HHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEAN-----D-RF--VEQ 738 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~~-----~-~~--~~~ 738 (954)
.++++++-|.|. ...++..+...|-+ ..|.|+. .+..|+...... . .. ...
T Consensus 2 ~~li~~IPGNPG---------------lv~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPG---------------LVEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCC---------------hHHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 467888888762 22334445555543 4788888 444554333222 1 11 222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccCC
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAY 794 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~ 794 (954)
-++-..+.++.+.....-...++.++|||.|++|++.++-+.+ ..++.++...|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 2333344444444432113468999999999999999999998 5788888888753
No 342
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.43 E-value=0.0046 Score=66.87 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC--CC---CCC----
Q 002194 734 RFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LT---PFG---- 802 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~--~~---~~~---- 802 (954)
+++--...|++.|+.++.++-. -+.-++.++|+|+||++|..++--.|..|.+++--++..-.. +. +.+
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y 236 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKY 236 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccc
Confidence 3444456889999999988722 223489999999999999999999999999998766532210 00 000
Q ss_pred -----C--------ccccchhhhc---------HHHHHhcCccc-----ccCCC-CCC-EEEEEeCCCCCCCCchHHHHH
Q 002194 803 -----F--------QNEDRTLWEA---------TSTYVEMSPFM-----SANKL-KKP-ILLVHGEEDNNSGTLTMQSDR 853 (954)
Q Consensus 803 -----~--------~~~~~~~~~~---------~~~~~~~sp~~-----~~~~~-~~P-~Lii~G~~D~~v~~~~~~~~~ 853 (954)
+ ..-..+.|.. .+.+.-.+.++ -.++. +.| ....|+..|..+| .++-.+
T Consensus 237 ~~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~ 314 (403)
T PF11144_consen 237 ICSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEE 314 (403)
T ss_pred cccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHH
Confidence 0 0011334432 11111111110 01112 234 5567999999999 999999
Q ss_pred HHHHHHhCCCcEEEEEeCC
Q 002194 854 FFNALKGHGALCRLVILPF 872 (954)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~ 872 (954)
+++.++..|-+++++.+.+
T Consensus 315 l~~~l~~lgfda~l~lIkd 333 (403)
T PF11144_consen 315 LYEILKNLGFDATLHLIKD 333 (403)
T ss_pred HHHHHHHcCCCeEEEEecC
Confidence 9999999999999998843
No 343
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.42 E-value=0.064 Score=61.13 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCce--eeeecCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE--IEIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~--~~lt~~~~ 187 (954)
....+++|||++.+|++.+. .++.+. .|.+.++.+ +.. ..++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~----------------------~G~e~y------~lr~kdL~t----g~~~~d~i~---- 173 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV----------------------LGDEQY------TLRFKDLAT----GEELPDEIT---- 173 (682)
T ss_pred eeeeeeeCCCCceEEEEEec----------------------ccccEE------EEEEEeccc----ccccchhhc----
Confidence 45678999999999999773 333333 788989865 332 1121
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC--CceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
......+|.+||+.+.|++..+ ..-...||...+.+ .+.+.+...++..+ +-++.-|.+.+.|++.
T Consensus 174 -~~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f---~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 174 -NTSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRLGTPGSSDELVYEEKDDRF---FLSVGRSRSEAYIVIS 241 (682)
T ss_pred -ccccceEEecCCCeEEEEEEcC----CCCcceEEEEecCCCCCcceEEEEcCCCcE---EEEeeeccCCceEEEE
Confidence 1256689999999999998633 22356788877766 44444544333321 2244445556666655
No 344
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.011 Score=60.17 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=116.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCC--eEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~--~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (954)
..|.|+|+...- +...|.. +.+.++...|.|+-. +|+-.+ ++.+|.++++..=+...-....
T Consensus 63 etI~IYDm~k~~---qlg~ll~--HagsitaL~F~~~~S~shLlS~s---------dDG~i~iw~~~~W~~~~slK~H-- 126 (362)
T KOG0294|consen 63 ETIHIYDMRKRK---QLGILLS--HAGSITALKFYPPLSKSHLLSGS---------DDGHIIIWRVGSWELLKSLKAH-- 126 (362)
T ss_pred CcEEEEeccchh---hhcceec--cccceEEEEecCCcchhheeeec---------CCCcEEEEEcCCeEEeeeeccc--
Confidence 589999985421 1112221 224688888888775 777754 2455666664332211111111
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
.+.+..++..|.|++-.... +...|-.+|
T Consensus 127 --~~~Vt~lsiHPS~KLALsVg-------------------------------------------------~D~~lr~WN 155 (362)
T KOG0294|consen 127 --KGQVTDLSIHPSGKLALSVG-------------------------------------------------GDQVLRTWN 155 (362)
T ss_pred --ccccceeEecCCCceEEEEc-------------------------------------------------CCceeeeeh
Confidence 22277888999998555440 223355677
Q ss_pred e-CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCcccccc
Q 002194 321 L-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSV 397 (954)
Q Consensus 321 ~-~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~ 397 (954)
+ .|+...+.+- .....+.|+|.|.+.+....+ .|-+|.++... .+.+....
T Consensus 156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~~------------ 209 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENPK------------ 209 (362)
T ss_pred hhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhccc------------
Confidence 7 7754444333 344558999999988777632 56677766322 12222210
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCcee-e-ccCCceEEEEEe
Q 002194 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS-W-CDDSLALVYESW 475 (954)
Q Consensus 398 ~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~-~-spDg~~l~~~~~ 475 (954)
..-.+.|- ++..++.- .....+-++|- .+......+..+..++-++. + .|++.+|+.++.
T Consensus 210 --r~l~~~~l-~~~~L~vG-------------~d~~~i~~~D~--ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 210 --RILCATFL-DGSELLVG-------------GDNEWISLKDT--DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred --cceeeeec-CCceEEEe-------------cCCceEEEecc--CCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 00011121 12222221 11234556663 12233345566777776655 2 467877877765
Q ss_pred ccccceEEEEEcCCCC
Q 002194 476 YKTRRTRTWVISPGSK 491 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~ 491 (954)
++ ...+|.++.++.
T Consensus 272 DG--~I~vWd~~~~~k 285 (362)
T KOG0294|consen 272 DG--FIKVWDIDMETK 285 (362)
T ss_pred Cc--eEEEEEcccccc
Confidence 54 378999888865
No 345
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.41 E-value=0.11 Score=62.16 Aligned_cols=266 Identities=15% Similarity=0.099 Sum_probs=136.5
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCC
Q 002194 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (954)
Q Consensus 107 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~ 186 (954)
.......+.|||||+.++|...+ +... ..+|+.++. | .++..
T Consensus 58 ~~~~~~~~~~spdg~~~~~~~~~-----------------------~~~~------~~l~l~~~~--g------~~~~~- 99 (620)
T COG1506 58 FGGGVSELRWSPDGSVLAFVSTD-----------------------GGRV------AQLYLVDVG--G------LITKT- 99 (620)
T ss_pred cCCcccccccCCCCCEEEEEecc-----------------------CCCc------ceEEEEecC--C------ceeee-
Confidence 34467788999999999999843 0011 367887652 2 22211
Q ss_pred CCCcccceeecCCCCeEEEEEeecc-c----------------cCC-CCceEEEEEECCCCceeecccCCCccccccccc
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDA-E----------------DSS-SSKLRVWVADVDTGKARPLFQSPDIYLNAIFDN 248 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~-~----------------~~~-~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~ 248 (954)
...+..+.|+|+|+.++|...... . ... ....++|++|.++ ....+...... +..
T Consensus 100 -~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~-----~~~ 172 (620)
T COG1506 100 -AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLD-----VVS 172 (620)
T ss_pred -ecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCc-----eee
Confidence 135788999999999999321110 0 011 1456777777665 33333322222 345
Q ss_pred eeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE
Q 002194 249 FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE 327 (954)
Q Consensus 249 ~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~ 327 (954)
+.|.+|++.++......... + .....+.... ++.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~---------------------------------~---------~~~~~~~~~~~~~~~~~ 210 (620)
T COG1506 173 FATDGDGRLVASIRLDDDAD---------------------------------P---------WVTNLYVLIEGNGELES 210 (620)
T ss_pred eeeCCCCceeEEeeeccccC---------------------------------C---------ceEeeEEEecCCCceEE
Confidence 55666677776652111100 0 1122333333 667777
Q ss_pred cCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceee
Q 002194 328 IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 328 l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
++.. .....+.|.+||+.+++.....+.. ......+++++.+.++....... .+ .. .+.....+
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~~--~~--~~------~~~~~~~~ 275 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRG-----LAEGDFILLLDGELGEVDGDLSS--GD--DT------RGAWAVEG 275 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccC-----ccccceEEEEeccccccceeecc--CC--cc------cCcHHhcc
Confidence 7766 6788899999999999988665421 11223455555222222221110 00 00 01111223
Q ss_pred ccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEE
Q 002194 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~ 486 (954)
.-++..++|.+... .+...++...... +....+......+. .|+.+++.+++.........++|++
T Consensus 276 ~~~~~~~~~~~~~~-----------~g~~~l~~~~~~~-~~~~~~~~~~~~v~--~f~~~~~~~~~~~s~~~~p~~i~~~ 341 (620)
T COG1506 276 GLDGDGLLFIATDG-----------GGSSPLFRVDDLG-GGVEGLSGDDGGVP--GFDVDGRKLALAYSSPTEPPEIYLY 341 (620)
T ss_pred ccCCCcEEEEEecC-----------CCceEEEEEeccC-CceeeecCCCceEE--EEeeCCCEEEEEecCCCCccceEEE
Confidence 34555555553221 1223333321112 22222222223333 4555999998887655545778888
Q ss_pred cC
Q 002194 487 SP 488 (954)
Q Consensus 487 d~ 488 (954)
+.
T Consensus 342 ~~ 343 (620)
T COG1506 342 DR 343 (620)
T ss_pred cC
Confidence 86
No 346
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00086 Score=79.28 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=87.4
Q ss_pred cceEEEEEeCCceeEcCCC-----ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCC
Q 002194 313 TTQLVLVSLDGTVKEIGPP-----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPL 386 (954)
Q Consensus 313 ~~~l~~~~~~G~~~~l~~~-----~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~ 386 (954)
.++|+++|+..-.+..+.+ ..+..++|...-.+|+.+... .+...|||++.++ +-.+.....
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCC
Confidence 4568899984332333221 556667777666666554422 2367799999653 223333221
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccC
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spD 466 (954)
. .....++|.||...-+...... +..-.|-+||+ -......+.++.+...+-++.|++.
T Consensus 206 ~-----------~~~S~l~WhP~~aTql~~As~d---------d~~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 206 R-----------MHCSVLAWHPDHATQLLVASGD---------DSAPVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred c-----------cceeeeeeCCCCceeeeeecCC---------CCCceeEeecc-cccCCchhhhcccccceeeeccCCC
Confidence 1 1245799999998665552221 12335667775 1234445666778888889999999
Q ss_pred CceEEEEEeccccceEEEEEcCCCC
Q 002194 467 SLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+..++.++..++ ++...+.+++
T Consensus 265 D~~lllSsgkD~---~ii~wN~~tg 286 (1049)
T KOG0307|consen 265 DPRLLLSSGKDN---RIICWNPNTG 286 (1049)
T ss_pred CchhhhcccCCC---CeeEecCCCc
Confidence 877777776664 5778888775
No 347
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.39 E-value=0.0025 Score=66.26 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=83.6
Q ss_pred eceEEEEccCCCCCCceeeeecCC----CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP----DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~----~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 238 (954)
..|||+|+++ -+.|..+. ........+.++++.+|||-..+ ...+|.++|+..-+..-.....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccceeeeEEEec
Confidence 4799999953 23332221 11134445556667799995432 2678888887764443333333
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
... +..++|++||..|+.++. ...-|.+
T Consensus 173 ~~~----lAalafs~~G~llATASe------------------------------------------------KGTVIRV 200 (391)
T KOG2110|consen 173 KGP----LAALAFSPDGTLLATASE------------------------------------------------KGTVIRV 200 (391)
T ss_pred CCc----eeEEEECCCCCEEEEecc------------------------------------------------CceEEEE
Confidence 322 668999999999997611 1112334
Q ss_pred EEe-CCc-eeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 319 VSL-DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 319 ~~~-~G~-~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
+.+ +|+ ..++-.+ ..+.+.+||||+++|..+++.+ +|.++.++.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEecc
Confidence 455 663 3334333 5678999999999999998654 788887763
No 348
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.39 E-value=0.25 Score=53.83 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=39.6
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec---ccCCCccccccccceeEecCCeEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL---FQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l---t~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
+.+....|.|-+..|..+- |..+|+.++..++...+- ....+. ..+..++|.+||+.|-
T Consensus 201 e~v~~a~FHPtd~nliit~---------Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC---------GKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLENGDVIT 262 (626)
T ss_pred ceEEEEEeccCCCcEEEEe---------CCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcCCCCEEe
Confidence 4577889999887777654 478999999988765332 222221 1255778888887554
No 349
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.37 E-value=0.025 Score=57.12 Aligned_cols=232 Identities=16% Similarity=0.224 Sum_probs=125.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCC-----eEEEEEeeccccCCCCceEEEEEECCCCceee---cc
Q 002194 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-----HLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LF 235 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~-----~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt 235 (954)
.|.|..+..++ ++......+...-.++-..|.||.+ .||.+ +...+||.++.+.++... |.
T Consensus 74 kvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs---------~D~LRlWri~~ee~~~~~~~~L~ 142 (364)
T KOG0290|consen 74 KVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS---------SDFLRLWRIGDEESRVELQSVLN 142 (364)
T ss_pred eeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccCcchhhcc---------cCeEEEEeccCcCCceehhhhhc
Confidence 45566664333 4433332222222567788999885 44443 236788988865544332 22
Q ss_pred cCCCccccccccceeEe-cCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccc
Q 002194 236 QSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (954)
Q Consensus 236 ~~~~~~~~~~~~~~~ws-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~ 314 (954)
......+.+.+.++.|. -|-++|..+ +-+ .+-
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtS---------------------SiD--------------------------TTC 175 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTS---------------------SID--------------------------TTC 175 (364)
T ss_pred cCcccccCCcccccccccCCcceeEee---------------------ccc--------------------------CeE
Confidence 22333455667788897 344555544 111 334
Q ss_pred eEEEEEe--CC--ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 315 QLVLVSL--DG--TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 315 ~l~~~~~--~G--~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
.||-+.. .| +.+.|.....+.+++|+.+|+.+..+- .. ++.+.++|+...+...|.-.......
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv-ga-----------DGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV-GA-----------DGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe-cC-----------CCcEEEEEecccccceEEecCCCCCC
Confidence 4555443 23 344455557888999999776654433 22 34788888876554433321111011
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
| .-.++|++........+ . .....|.++|+ -.-......|..+...+++++|.|-.+.-
T Consensus 244 p---------LlRLswnkqDpnymATf-~----------~dS~~V~iLDi-R~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 244 P---------LLRLSWNKQDPNYMATF-A----------MDSNKVVILDI-RVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred c---------ceeeccCcCCchHHhhh-h----------cCCceEEEEEe-cCCCcceehhhcCcccccceEecCCCCce
Confidence 1 12356665443221110 1 11335666664 12333456677888999999999998776
Q ss_pred EEEEeccccceEEEEEc
Q 002194 471 VYESWYKTRRTRTWVIS 487 (954)
Q Consensus 471 ~~~~~~~~~~~~l~~~d 487 (954)
+.+..++- +.-||.++
T Consensus 303 ictaGDD~-qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAGDDC-QALIWDLQ 318 (364)
T ss_pred eeecCCcc-eEEEEecc
Confidence 66655553 35566554
No 350
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.36 E-value=0.00038 Score=49.00 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~ 223 (954)
.....|+|||||++|+|++... +.+..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~----~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN----DRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCC----CCCCcCEEC
Confidence 4688999999999999998743 147888885
No 351
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.046 Score=55.79 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
.++.+.|||.+..|+.++.+ +.|.++++.. ...+.. +..+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD---------------------------------gslrlYdv~~----~~l~~~--~~~~~ 55 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD---------------------------------GSLRLYDVPA----NSLKLK--FKHGA 55 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc---------------------------------CcEEEEeccc----hhhhhh--eecCC
Confidence 46789999999999888876 5788999854 222222 33445
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEec
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (954)
.+....|.+ -.++++ ++-...|-++|+.+++..++-.+... +.-+..++
T Consensus 56 plL~c~F~d-~~~~~~---------G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~ 104 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVT---------GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSY 104 (323)
T ss_pred ceeeeeccC-CceEEE---------eccCceEEEEEecCCcceeeccCCCc-----eEEEEeec
Confidence 677788886 446666 33467889999999988887655543 44455553
No 352
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.31 E-value=0.035 Score=58.03 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred ceEEEEEe-CCc-eeEcC----CCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCC
Q 002194 314 TQLVLVSL-DGT-VKEIG----PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPL 386 (954)
Q Consensus 314 ~~l~~~~~-~G~-~~~l~----~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~ 386 (954)
.+||++|+ +-+ ...|. ++.+...+++++++-+|||-.... .++|.+||+..-+ +..+..+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTINAHK- 173 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEEecC-
Confidence 34999998 543 22221 124555667777788999976443 3589999987532 22333322
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCC-eEEEEecCCCCCCCceEEeec--ccccCceee
Q 002194 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRD-IIYTQQAEPVQGEGPEILHKL--DLRYGGISW 463 (954)
Q Consensus 387 ~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~ 463 (954)
+..-.++|++||..|+-. +..+ .|.++.+ .+|....++..+ ...+.+++|
T Consensus 174 ------------~~lAalafs~~G~llATA-------------SeKGTVIRVf~v--~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 174 ------------GPLAALAFSPDGTLLATA-------------SEKGTVIRVFSV--PEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ------------CceeEEEECCCCCEEEEe-------------ccCceEEEEEEc--CCccEeeeeeCCceeeEEEEEEE
Confidence 233468999999977665 3333 4455654 344444444222 345678999
Q ss_pred ccCCceEEEEEeccccceEEEEEcCCC
Q 002194 464 CDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 464 spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+||++.|..+++.++ .+|+.++...
T Consensus 227 s~ds~~L~~sS~TeT--VHiFKL~~~~ 251 (391)
T KOG2110|consen 227 SPDSQFLAASSNTET--VHIFKLEKVS 251 (391)
T ss_pred CCCCCeEEEecCCCe--EEEEEecccc
Confidence 999999999887765 7788877543
No 353
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.31 E-value=0.0027 Score=71.99 Aligned_cols=206 Identities=12% Similarity=0.158 Sum_probs=117.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCC-cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~-~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|-+||++-. +..++|+.+.+.. .+...-|++---.|+.+.. .++...+| |+...+-...+....+.
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS------QDg~vK~~--DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGS------QDGTVKCW--DLRSKKSKSTFRSNSES 178 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecC------CCceEEEE--eeecccccccccccchh
Confidence 57889999532 2344554444333 7788899988778877543 34444445 55554555555444332
Q ss_pred ccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe
Q 002194 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~ 321 (954)
+.++.|+|--...|++..+. |.-++|-+.-
T Consensus 179 ----iRDV~fsp~~~~~F~s~~ds----------------------------------------------G~lqlWDlRq 208 (839)
T KOG0269|consen 179 ----IRDVKFSPGYGNKFASIHDS----------------------------------------------GYLQLWDLRQ 208 (839)
T ss_pred ----hhceeeccCCCceEEEecCC----------------------------------------------ceEEEeeccC
Confidence 77999997654444441100 2233443332
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (954)
+.-.++++.. +.+.-..|+|++.|||....+ +.+.||+..+.+..++...... .
T Consensus 209 p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-------------K~vkiWd~t~~~~~~~~tInTi-----------a 264 (839)
T KOG0269|consen 209 PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-------------KMVKIWDMTDSRAKPKHTINTI-----------A 264 (839)
T ss_pred chhHHHHhhcccCceEEEeecCCCceeeecCCC-------------ccEEEEeccCCCccceeEEeec-----------c
Confidence 3334555555 778889999999999987733 3899999997655443322111 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeecc
Q 002194 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCD 465 (954)
Q Consensus 400 g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~sp 465 (954)
-+..+.|.|+-+..+... .......|++||+ .-.= .-..+..+...+..++|-.
T Consensus 265 pv~rVkWRP~~~~hLAtc----------smv~dtsV~VWDv--rRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATC----------SMVVDTSVHVWDV--RRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eeeeeeeccCccchhhhh----------hccccceEEEEee--ccccccceeeeccCccccceeccC
Confidence 234688999888544331 1122446888886 1100 1122334444456667744
No 354
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.29 E-value=0.018 Score=61.62 Aligned_cols=229 Identities=11% Similarity=0.240 Sum_probs=129.2
Q ss_pred eceEEEEccCCCCCCc-------eeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-----
Q 002194 163 TGIGIHQLFPDGKLGQ-------EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----- 230 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~-------~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~----- 230 (954)
++++||+......... ..+|.++.. .....+|++.-.--+.+. ..+....+|-++..+.+
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~------~~d~~i~lwdi~~~~~~~~~~~ 218 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSG------SDDHTICLWDINAESKEDKVVD 218 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeec------cCCCcEEEEeccccccCCcccc
Confidence 5889998864332111 125655443 245689998654333322 23445556655544332
Q ss_pred eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccc
Q 002194 231 ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310 (954)
Q Consensus 231 ~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~ 310 (954)
++.++.... ..+..++|.+-.+.+|.+..
T Consensus 219 p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~----------------------------------------------- 247 (422)
T KOG0264|consen 219 PKTIFSGHE----DVVEDVAWHPLHEDLFGSVG----------------------------------------------- 247 (422)
T ss_pred ceEEeecCC----cceehhhccccchhhheeec-----------------------------------------------
Confidence 122222222 23778999987776765511
Q ss_pred cccceEEEEEe-CC--ceeEcCC-C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCC
Q 002194 311 YATTQLVLVSL-DG--TVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (954)
Q Consensus 311 ~~~~~l~~~~~-~G--~~~~l~~-~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~ 385 (954)
..+.|.++|+ ++ +...... . +.+..++|+|=+.+|+.+... +++|.|||+..-.. .+
T Consensus 248 -dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~------------D~tV~LwDlRnL~~-~l---- 309 (422)
T KOG0264|consen 248 -DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA------------DKTVALWDLRNLNK-PL---- 309 (422)
T ss_pred -CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC------------CCcEEEeechhccc-Cc----
Confidence 1234666676 43 1122221 1 667789999988887766532 34899999874221 11
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC---------CCCCceEEe---e
Q 002194 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV---------QGEGPEILH---K 453 (954)
Q Consensus 386 ~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~g~~~~~l~---~ 453 (954)
..+.+....+..+.|||+-..++... +..+++.+||+.-. +.+.+..|. +
T Consensus 310 ------h~~e~H~dev~~V~WSPh~etvLASS------------g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 310 ------HTFEGHEDEVFQVEWSPHNETVLASS------------GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred ------eeccCCCcceEEEEeCCCCCceeEec------------ccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 12334445667899999998877651 22446777775111 112233332 3
Q ss_pred cccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 454 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
+...+..++|.|..-+++.+..+++ -.+||.+.
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN-~LqIW~~s 404 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDN-ILQIWQMA 404 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCc-eEEEeecc
Confidence 3445778999999988877766654 25677654
No 355
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.29 E-value=0.03 Score=58.64 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=134.7
Q ss_pred CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEe-cCC-e-EEEEEec
Q 002194 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNS-T-LLVCTIP 263 (954)
Q Consensus 187 ~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDG-~-~l~~~~~ 263 (954)
+..+++.+.-+ +++|+... ....+.+++..|....++..+.+. +..++|- +|. + .++.+
T Consensus 104 hdDWVSsv~~~--~~~Iltgs---------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~~~fvsa-- 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGS---------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSSCLFVSA-- 165 (423)
T ss_pred chhhhhhhccc--CceEEEee---------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCccceEEEe--
Confidence 33467776666 78998854 345566667777666666554443 6677786 332 2 23333
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc--eeEcC-CC-ccccccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT--VKEIG-PP-AVYTSLD 338 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~--~~~l~-~~-~~~~~~~ 338 (954)
+.+ .+-.||.++. .-. ..... .. ..+.+++
T Consensus 166 -------------------s~D--------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 166 -------------------SMD--------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVS 200 (423)
T ss_pred -------------------cCC--------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence 111 2334677765 221 11221 22 6778889
Q ss_pred cCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccC------------CCcccCCc-cccccccCcccee
Q 002194 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL------------PLAEDIPI-AFNSVRKGMRSIN 405 (954)
Q Consensus 339 ~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~------------~~~~~~p~-~~~~~~~g~~~~~ 405 (954)
..+||.+++-.+- +..|-+|+.......++-.. ......|. ...++..-+.++.
T Consensus 201 v~~sgtr~~SgS~-------------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 201 VDSSGTRFCSGSW-------------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ecCCCCeEEeecc-------------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 9999999888773 34788888332211111110 11112333 4456666778899
Q ss_pred eccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEE
Q 002194 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (954)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~ 485 (954)
|++ ...+|.. +....|.+||+ ..++....++ .......+..+|..+.|+..+.+. .|.+
T Consensus 268 w~d--~~v~yS~------------SwDHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr----~irl 326 (423)
T KOG0313|consen 268 WSD--ATVIYSV------------SWDHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDR----HIRL 326 (423)
T ss_pred EcC--CCceEee------------cccceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCCC----ceee
Confidence 998 3355541 33557889997 3444443443 233456788999888888776543 3556
Q ss_pred EcCCCCCCCcEE-EecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 486 ISPGSKDVAPRI-LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 486 ~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.|+.++.+.... -+-.+..-+.+ +.|+|-..+++...
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSG 364 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEE
Confidence 677665443322 23333333333 77888887766554
No 356
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.032 Score=54.98 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=81.6
Q ss_pred ccccccccCCCCcE--EEEEeecCCcccccccCCCCcceEEEeccCc---eEEEeccCCCcccCCccccccccCccceee
Q 002194 332 AVYTSLDPSPDEKY--ILISSIHRPYSFIVPCGRFPRQVGVWTTDGI---FVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (954)
Q Consensus 332 ~~~~~~~~SpDGk~--l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~---~~~~l~~~~~~~~~p~~~~~~~~g~~~~~w 406 (954)
..+.+++|.|.+-- |+..+. +++|.+.+.++. ....+. +.+..|+.+++|
T Consensus 103 ~SVNsV~wapheygl~LacasS-------------DG~vsvl~~~~~g~w~t~ki~------------~aH~~GvnsVsw 157 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASS-------------DGKVSVLTYDSSGGWTTSKIV------------FAHEIGVNSVSW 157 (299)
T ss_pred ccceeecccccccceEEEEeeC-------------CCcEEEEEEcCCCCccchhhh------------hccccccceeee
Confidence 67788888887644 344442 236666666532 111111 134467889999
Q ss_pred ccC---CCCceEEEEeccCCCcccc-ccCCCeEEEEecCCCCCC---CceEEeecccccCceeeccCC----ceEEEEEe
Q 002194 407 RSD---KPSTLYWAETQDGGDAKVE-VTPRDIIYTQQAEPVQGE---GPEILHKLDLRYGGISWCDDS----LALVYESW 475 (954)
Q Consensus 407 spD---g~~i~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~g~---~~~~l~~~~~~~~~~~~spDg----~~l~~~~~ 475 (954)
.|- |..+ - .....+-..+. .+-.+.+-+|.. +.+ ..+.|..+..-++.++|+|.- .+|+..+.
T Consensus 158 apa~~~g~~~--~-~~~~~~~krlvSgGcDn~VkiW~~---~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 158 APASAPGSLV--D-QGPAAKVKRLVSGGCDNLVKIWKF---DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cCcCCCcccc--c-cCcccccceeeccCCccceeeeec---CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 985 4210 0 00000000011 012334445553 222 123356666668889999973 23555544
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
+++ .-||..+.+.+.-+.+++.+ ....++. ++||+.|..|+...
T Consensus 232 Dg~--viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 232 DGT--VIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAVSG 275 (299)
T ss_pred CCc--EEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEEec
Confidence 443 67888885544333333332 2222333 88999999887765
No 357
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.28 E-value=0.038 Score=57.32 Aligned_cols=183 Identities=12% Similarity=0.067 Sum_probs=116.5
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCC
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~ 268 (954)
+++..+.+-|-.+|++. ++....+-++|+.+|+...-..+.-. .+..+++|+---++|...
T Consensus 152 gWVr~vavdP~n~wf~t---------gs~DrtikIwDlatg~LkltltGhi~----~vr~vavS~rHpYlFs~g------ 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFAT---------GSADRTIKIWDLATGQLKLTLTGHIE----TVRGVAVSKRHPYLFSAG------ 212 (460)
T ss_pred ceEEEEeeCCCceeEEe---------cCCCceeEEEEcccCeEEEeecchhh----eeeeeeecccCceEEEec------
Confidence 47888999998888776 34467788889999887533222211 266888998888888661
Q ss_pred CCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE-cCCC-ccccccccCCCCcE
Q 002194 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEKY 345 (954)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~-l~~~-~~~~~~~~SpDGk~ 345 (954)
...++--+|+ ..+.-+ .... ..+..++..|--..
T Consensus 213 -------------------------------------------edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 213 -------------------------------------------EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred -------------------------------------------CCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 1234666777 444333 3333 56677788886666
Q ss_pred EEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 346 l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
|+..+.+ ..+.+||+.++. +..+..+. ..+.++.+.|-...++--
T Consensus 250 l~t~grD-------------st~RvWDiRtr~~V~~l~GH~-------------~~V~~V~~~~~dpqvit~-------- 295 (460)
T KOG0285|consen 250 LVTGGRD-------------STIRVWDIRTRASVHVLSGHT-------------NPVASVMCQPTDPQVITG-------- 295 (460)
T ss_pred EEecCCc-------------ceEEEeeecccceEEEecCCC-------------CcceeEEeecCCCceEEe--------
Confidence 6655532 378999999764 34444332 122344455433333322
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
+....|.+||+ ..|.....++.+...+..++..|+...++.++
T Consensus 296 -----S~D~tvrlWDl--~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 296 -----SHDSTVRLWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred -----cCCceEEEeee--ccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 44567889996 56777778888888888888888876555543
No 358
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.28 E-value=0.00032 Score=83.10 Aligned_cols=126 Identities=25% Similarity=0.271 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCC-CCCC---CC
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-PIIG---EG 727 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-~~~G---~G 727 (954)
++..+|.|..-..+ + +|++|++|||.+..+.... +..+. ....+..+..+|+.++|| |..| .|
T Consensus 97 LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs~~~--------~~~~~--~~~~~~~~~VVvVt~~YRLG~lGF~st~ 163 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGSASS--------FEIIS--PAYVLLLKDVVVVTINYRLGPLGFLSTG 163 (545)
T ss_pred ceEEEeccCCCccC--C-CCEEEEEeCCceeeccccc--------hhhcC--chhccccCCEEEEEecccceeceeeecC
Confidence 67788888752211 2 8999999999654433211 11111 122334456778876664 3333 22
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccC
Q 002194 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGA 793 (954)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~ 793 (954)
.+.. .+...+.|+..|++|+.++ -.-||++|-|+|||+||..+..++.. ...+|+.+|..+|.
T Consensus 164 d~~~---~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 164 DSAA---PGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCC---CCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 2222 2344566999999999875 23699999999999999998776642 22578888888774
No 359
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=7.8e-05 Score=68.51 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCccc
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (954)
+.-.|+++.. =|.+..+.|.||||+.|+.+..++|++|..+|+.+|++|....--++.+ +. .|. ++|.+
T Consensus 89 AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyd-------dD-v~y-nsP~d 157 (227)
T COG4947 89 AYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYD-------DD-VYY-NSPSD 157 (227)
T ss_pred HHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcccccc-------Cc-eee-cChhh
Confidence 3345666653 2356889999999999999999999999999999999885421111111 11 111 45555
Q ss_pred ccCCCCC----------CEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcC
Q 002194 825 SANKLKK----------PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (954)
Q Consensus 825 ~~~~~~~----------P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (954)
++-.+.. -+.+..|..|+.. .+..++.+.|..+.++..+.+..+..|.+
T Consensus 158 ylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 158 YLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 5544433 4677788888764 46778888888888887777777777765
No 360
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.1 Score=53.33 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=71.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.++.+.|||.+..|+.++ -++...|| ++...+.+........ +-.++|.++.+.+.-.
T Consensus 15 ~IS~v~f~~~~~~LLvss-------WDgslrlY--dv~~~~l~~~~~~~~p-----lL~c~F~d~~~~~~G~-------- 72 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSS-------WDGSLRLY--DVPANSLKLKFKHGAP-----LLDCAFADESTIVTGG-------- 72 (323)
T ss_pred ceeeEEEcCcCCcEEEEe-------ccCcEEEE--eccchhhhhheecCCc-----eeeeeccCCceEEEec--------
Confidence 689999999999888866 33444444 5555566555544443 5688898766544422
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
-..+|-++|+ +|...++..+ ..+..+..++--..++
T Consensus 73 ------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI 110 (323)
T KOG1036|consen 73 ------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI 110 (323)
T ss_pred ------------------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE
Confidence 2346888999 7877777766 7777777776433444
Q ss_pred EEeecCCcccccccCCCCcceEEEeccC
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
..+ ++..|.+||...
T Consensus 111 sgs-------------WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 111 SGS-------------WDKTIKFWDPRN 125 (323)
T ss_pred Ecc-------------cCccEEEEeccc
Confidence 333 455899999875
No 361
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.26 E-value=0.021 Score=61.18 Aligned_cols=240 Identities=16% Similarity=0.197 Sum_probs=130.1
Q ss_pred HHHhhcCCCCCCcee--cCCCCEEEEEecC--CCCCccccccccceeeeeeec-------CCCCCC-cceeeEeceEEEE
Q 002194 102 IREIVDAPPLPALSF--SPQRDKILFLKRR--ALPPLEELARPEEKLAGLRID-------GKCNTR-SRMSFYTGIGIHQ 169 (954)
Q Consensus 102 ~~~~~~~~~~~~~~~--SPDG~~laf~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~l~l~~ 169 (954)
+-+.--+|....+.- +|.|..++|-... +.+....-.+|+++|.+-.-+ ...... ...+....|.+|+
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 333334444444333 7888888886543 333333355666666543321 111111 1122235789999
Q ss_pred ccCCCCCC---ceeee-ecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC--CceeecccCCCcccc
Q 002194 170 LFPDGKLG---QEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLN 243 (954)
Q Consensus 170 ~~~~g~~~---~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~ 243 (954)
++..+... .++.+ .+ +...+..++|+|-.+.++-.. .....|.++|+.+ .+.........
T Consensus 207 i~~~~~~~~~~~p~~~~~~--h~~~VeDV~~h~~h~~lF~sv--------~dd~~L~iwD~R~~~~~~~~~~~ah~---- 272 (422)
T KOG0264|consen 207 INAESKEDKVVDPKTIFSG--HEDVVEDVAWHPLHEDLFGSV--------GDDGKLMIWDTRSNTSKPSHSVKAHS---- 272 (422)
T ss_pred ccccccCCccccceEEeec--CCcceehhhccccchhhheee--------cCCCeEEEEEcCCCCCCCcccccccC----
Confidence 96544311 11222 22 224788899999665443322 1256788888874 33333332222
Q ss_pred ccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe--
Q 002194 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (954)
Q Consensus 244 ~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-- 321 (954)
+.+..++|.|=+..|+.+. + ....|.++|+
T Consensus 273 ~~vn~~~fnp~~~~ilAT~--------------------S----------------------------~D~tV~LwDlRn 304 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATG--------------------S----------------------------ADKTVALWDLRN 304 (422)
T ss_pred CceeEEEeCCCCCceEEec--------------------c----------------------------CCCcEEEeechh
Confidence 2267889998877666551 1 1233556665
Q ss_pred -CCceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC---ccccc
Q 002194 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP---IAFNS 396 (954)
Q Consensus 322 -~G~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p---~~~~~ 396 (954)
...+..+... ..+..+.|||+-+.|+.++.. ++.+.+||+..-...+- .....+..| +.--+
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~------------D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT------------DRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGG 371 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEeccc------------CCcEEEEeccccccccC-hhhhccCCcceeEEecC
Confidence 3344444444 778889999999998887743 34889999873111111 000011111 11224
Q ss_pred cccCccceeeccCCCCceEE
Q 002194 397 VRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~ 416 (954)
+...+..++|.|.-..++..
T Consensus 372 H~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred cccccccccCCCCCCeEEEE
Confidence 45567789999988876655
No 362
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.24 E-value=0.012 Score=67.63 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 432 RDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
.-.|.++|+ .+.. .|.+-.+...+..+.||||||+|+.++.+.. .++|.+.+.. .--..+++.+...
T Consensus 555 df~I~vvD~---~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t--Ir~wDlpt~~--lID~~~vd~~~~s----- 622 (910)
T KOG1539|consen 555 DFSIRVVDV---VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST--IRTWDLPTGT--LIDGLLVDSPCTS----- 622 (910)
T ss_pred ceeEEEEEc---hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc--EEEEeccCcc--eeeeEecCCccee-----
Confidence 336788885 3322 3455667778899999999999999987754 5555554433 1112233333222
Q ss_pred CCCCeeeccCCcEEEEEEe
Q 002194 511 GSPMMRRTSTGTYVIAKIK 529 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~~~ 529 (954)
++|||.|.+|+....
T Consensus 623 ----ls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 623 ----LSFSPNGDFLATVHV 637 (910)
T ss_pred ----eEECCCCCEEEEEEe
Confidence 889999999998874
No 363
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.21 E-value=0.0089 Score=61.24 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=71.3
Q ss_pred cccceeecCCCCe----EEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCC
Q 002194 190 KLNFVTWSQDGKH----LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (954)
Q Consensus 190 ~~~~~~wSPDG~~----iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~ 265 (954)
.-...+|+=|-.. +|. +.....|+++|+..++...-....+.. ++.+.+.|+.-.|+.+.
T Consensus 91 sfytcsw~yd~~~~~p~la~---------~G~~GvIrVid~~~~~~~~~~~ghG~s----INeik~~p~~~qlvls~--- 154 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAA---------GGYLGVIRVIDVVSGQCSKNYRGHGGS----INEIKFHPDRPQLVLSA--- 154 (385)
T ss_pred ceEEEEEEecCCCCCeeEEe---------ecceeEEEEEecchhhhccceeccCcc----chhhhcCCCCCcEEEEe---
Confidence 4455788876552 222 224778999999887765443333332 67888888875454441
Q ss_pred CCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcCCC-----cccccccc
Q 002194 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDP 339 (954)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-----~~~~~~~~ 339 (954)
+. ...|-++++ ++.-.-+..+ +.+-+++|
T Consensus 155 -----------------Sk----------------------------D~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 155 -----------------SK----------------------------DHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred -----------------cC----------------------------CceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 11 112444455 5544444332 55678999
Q ss_pred CCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE
Q 002194 340 SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (954)
Q Consensus 340 SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~ 378 (954)
|+||.+|+...++ ..|.+|+++.++.
T Consensus 190 ~~~gd~i~ScGmD-------------hslk~W~l~~~~f 215 (385)
T KOG1034|consen 190 SLDGDRIASCGMD-------------HSLKLWRLNVKEF 215 (385)
T ss_pred cCCCCeeeccCCc-------------ceEEEEecChhHH
Confidence 9999998877644 3889999886543
No 364
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.21 E-value=0.019 Score=67.86 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=51.7
Q ss_pred ceEEEEccCCCCCCceeee-ecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCCCc
Q 002194 164 GIGIHQLFPDGKLGQEIEI-QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDI 240 (954)
Q Consensus 164 ~l~l~~~~~~g~~~~~~~l-t~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~ 240 (954)
+|.+.|. || ...+.+ .. +...+.+|.|||||++|||+... +.-++...||+.++++. ...+| +..
T Consensus 330 ~L~~~D~--dG--~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~---e~~~g~s~vYv~~L~t~~~~~vkl---~ve 397 (912)
T TIGR02171 330 NLAYIDY--TK--GASRAVEIE--DTISVYHPDISPDGKKVAFCTGI---EGLPGKSSVYVRNLNASGSGLVKL---PVE 397 (912)
T ss_pred eEEEEec--CC--CCceEEEec--CCCceecCcCCCCCCEEEEEEee---cCCCCCceEEEEehhccCCCceEe---ecc
Confidence 6888887 55 455555 32 33478999999999999995432 22346888999999863 33333 221
Q ss_pred cccccccceeEe--cCC-eEEEEE
Q 002194 241 YLNAIFDNFVWV--NNS-TLLVCT 261 (954)
Q Consensus 241 ~~~~~~~~~~ws--pDG-~~l~~~ 261 (954)
+ ...+.|- .+| ..|+|+
T Consensus 398 --~--aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 398 --N--AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred --c--ccccceEecCCCCeEEEEE
Confidence 1 2245564 666 455665
No 365
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.022 Score=56.36 Aligned_cols=205 Identities=11% Similarity=0.093 Sum_probs=118.2
Q ss_pred cccceeecC--CCCeEEEEEeeccccCCCCceEEEEEECCC-CceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
.-..+.||| +++ ||....+. -+-.|+..|++.++++ +..+.+..... +..+-+++|++.-.-++++..
T Consensus 10 ~GysvqfSPf~~nr-LavAt~q~--yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~--- 80 (311)
T KOG0277|consen 10 HGYSVQFSPFVENR-LAVATAQH--YGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAAS--- 80 (311)
T ss_pred ccceeEecccccch-hheeehhh--cccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEe---
Confidence 345678888 554 44443221 2235688999999963 33332222111 112558999987665555411
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeC---CceeEcCCC-ccccccccCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD---GTVKEIGPP-AVYTSLDPSPD 342 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~---G~~~~l~~~-~~~~~~~~SpD 342 (954)
|.+.|-++|++ +.+..+.+. ..+.++.|++-
T Consensus 81 ---------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 81 ---------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ---------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 23334455552 323333344 67788999997
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
-+.++.++. ++++|.+|+.+.. .++. |++.+.-+...+|||--..++..
T Consensus 116 ~r~~~ltsS------------WD~TiKLW~~~r~~Sv~T-------------f~gh~~~Iy~a~~sp~~~nlfas----- 165 (311)
T KOG0277|consen 116 RRRIFLTSS------------WDGTIKLWDPNRPNSVQT-------------FNGHNSCIYQAAFSPHIPNLFAS----- 165 (311)
T ss_pred cceeEEeec------------cCCceEeecCCCCcceEe-------------ecCCccEEEEEecCCCCCCeEEE-----
Confidence 777776662 3558999988733 2222 22333344567899866554433
Q ss_pred CCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
.++.+.+.+||+ ...++...+..+...+-...|+.-...+++.+..++ .|+..|+..
T Consensus 166 -------~Sgd~~l~lwdv--r~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~ 222 (311)
T KOG0277|consen 166 -------ASGDGTLRLWDV--RSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRN 222 (311)
T ss_pred -------ccCCceEEEEEe--cCCCceeEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhh
Confidence 144556777776 233455456666666777889998888888766553 244445443
No 366
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.16 E-value=0.0069 Score=62.70 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---
Q 002194 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (954)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--- 780 (954)
+++.+...++.|... ...|.+.............++..+.+..... ..++.|+|||+||.+|..+|.+-
T Consensus 19 la~~l~~~~~~v~~i---~~~~~~~~~~~~~si~~la~~y~~~I~~~~~-----~gp~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 19 LARALPDDVIGVYGI---EYPGRGDDEPPPDSIEELASRYAEAIRARQP-----EGPYVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp HHHHHTTTEEEEEEE---CSTTSCTTSHEESSHHHHHHHHHHHHHHHTS-----SSSEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCeEEEEEE---ecCCCCCCCCCCCCHHHHHHHHHHHhhhhCC-----CCCeeehccCccHHHHHHHHHHHHHh
Confidence 444443334667763 3334432223334455666555555433311 12899999999999999998642
Q ss_pred CCcccEEEEeccC
Q 002194 781 PHLFCCGIARSGA 793 (954)
Q Consensus 781 p~~~~a~v~~~~~ 793 (954)
...+..++++.+.
T Consensus 91 G~~v~~l~liD~~ 103 (229)
T PF00975_consen 91 GEEVSRLILIDSP 103 (229)
T ss_dssp T-SESEEEEESCS
T ss_pred hhccCceEEecCC
Confidence 2347777777743
No 367
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.15 E-value=0.086 Score=53.36 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=126.8
Q ss_pred cccceeec--CCCC-eEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCC
Q 002194 190 KLNFVTWS--QDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wS--PDG~-~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~ 266 (954)
......|| ||.+ +||..+-. +.-+...+|.-.+.++++.......+. ...+..+.|.||.+-++
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~---Ee~~Nkvqiv~ld~~s~e~~~~a~fd~---~YP~tK~~wiPd~~g~~------- 112 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFI---EEYNNKVQIVQLDEDSGELVEDANFDH---PYPVTKLMWIPDSKGVY------- 112 (364)
T ss_pred ceeeeccccCCCcceeEEEeeec---cccCCeeEEEEEccCCCceeccCCCCC---CCCccceEecCCccccC-------
Confidence 44556777 4443 67765542 223345666777767777655433222 11255778998875332
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeE---cC-----CC-ccccc
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE---IG-----PP-AVYTS 336 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~---l~-----~~-~~~~~ 336 (954)
.|+|+... ..-+||+++. ++.... |. +. ...++
T Consensus 113 -----------------------------pdlLATs~--------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS 155 (364)
T KOG0290|consen 113 -----------------------------PDLLATSS--------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS 155 (364)
T ss_pred -----------------------------cchhhccc--------CeEEEEeccCcCCceehhhhhccCcccccCCcccc
Confidence 12222222 1235777765 332221 11 11 56688
Q ss_pred cccCC-CCcEEEEEeecCCcccccccCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 337 LDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 337 ~~~Sp-DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+.|.. |-++|..++.+ .+-.|||++.+. .++|..+. ..+..++|+.+|.
T Consensus 156 FDWne~dp~~igtSSiD-------------TTCTiWdie~~~~~~vkTQLIAHD-------------KEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSID-------------TTCTIWDIETGVSGTVKTQLIAHD-------------KEVYDIAFLKGSR 209 (364)
T ss_pred cccccCCcceeEeeccc-------------CeEEEEEEeeccccceeeEEEecC-------------cceeEEEeccCcc
Confidence 88986 55666666633 267789998652 23333332 4557889998666
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecc---cccCceeeccCC-ceEEEEEeccccceEEEEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLD---LRYGGISWCDDS-LALVYESWYKTRRTRTWVI 486 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~---~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~ 486 (954)
.+... ++..+.+.++|+ ..-+. +.+-... ...-.++|++.. ++++....+. .++.++
T Consensus 210 ~~FAS------------vgaDGSvRmFDL---R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS---~~V~iL 271 (364)
T KOG0290|consen 210 DVFAS------------VGADGSVRMFDL---RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS---NKVVIL 271 (364)
T ss_pred ceEEE------------ecCCCcEEEEEe---cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC---ceEEEE
Confidence 54433 234556777775 22222 2222221 223456777654 4444333222 457777
Q ss_pred cCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 487 SPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 487 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
|+.-+ ..+......+...+.+ ++|.|-.+.-+...
T Consensus 272 DiR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hicta 306 (364)
T KOG0290|consen 272 DIRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICTA 306 (364)
T ss_pred EecCC-CcceehhhcCcccccc------eEecCCCCceeeec
Confidence 77654 3444444555555555 88999876555443
No 368
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.13 E-value=0.042 Score=55.44 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=110.1
Q ss_pred cccceeecCCCCeEEEEEeecc-ccCCCCceEEEEEECCCCc-----eeecccCCCccccccccceeEecCCeEEEEEec
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGK-----ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~-~~~~~~~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~ 263 (954)
.+...+=||-.++|+-+..... ....-....||.+.-+-+. ...+...+...+ +.+.-+.|-|+++.++..
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav-g~i~cvew~Pns~klasm-- 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV-GKINCVEWEPNSDKLASM-- 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh-CceeeEEEcCCCCeeEEe--
Confidence 4566666786666665543320 1111234567777644333 222222232111 014467899999999876
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CC-c-eeEcCCC------ccc
Q 002194 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-T-VKEIGPP------AVY 334 (954)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G-~-~~~l~~~------~~~ 334 (954)
...+|.++++ .+ + ...+... ...
T Consensus 142 ------------------------------------------------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 142 ------------------------------------------------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred ------------------------------------------------ccCceEEEEcccCcchheeeccccccccccee
Confidence 1123555555 33 2 2222211 345
Q ss_pred cccccCC--CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 335 TSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 335 ~~~~~Sp--DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
++-+||| ||..++.++.. +++-||+.+-. .-.|.. .+...++++.|.|+-+
T Consensus 174 tsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~~~sI~d------------AHgq~vrdlDfNpnkq 227 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKKNNSIED------------AHGQRVRDLDFNPNKQ 227 (370)
T ss_pred cccccCCCCccceEEEeCCC--------------cEEEEEccchhhhcchhh------------hhcceeeeccCCCCce
Confidence 6788999 99999988732 78899987422 111111 1223467888999888
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCC-CCceEEeecccccCceeeccCCceEEEEEecc
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~ 477 (954)
.++.. - +..+-|.+||. ... .....+..+..-+..+.|.|--..|+.+...+
T Consensus 228 ~~lvt--~----------gDdgyvriWD~--R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 228 HILVT--C----------GDDGYVRIWDT--RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred EEEEE--c----------CCCccEEEEec--cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 66554 1 23446777774 222 23345556666677788888877777765444
No 369
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.11 E-value=0.05 Score=58.61 Aligned_cols=206 Identities=20% Similarity=0.200 Sum_probs=119.6
Q ss_pred CeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCC----
Q 002194 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII---- 724 (954)
Q Consensus 649 g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~---- 724 (954)
|.+-...||+|..- +.+.=+||++||.... -.+.+......+.|.+.|+..+.....+..
T Consensus 70 ~~~~flaL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~ 133 (310)
T PF12048_consen 70 GEERFLALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSITLPDPAPPAS 133 (310)
T ss_pred CCEEEEEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEecCCCcccccC
Confidence 33444557777642 2235689999984211 112222234566788999999982221100
Q ss_pred -----------CCCCc--c---------------cchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 725 -----------GEGDE--E---------------ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 725 -----------G~G~~--~---------------~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
.-+.. . ....+....+.=+.+++.++.+++. .+|+|+||+.|+++++.+
T Consensus 134 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~ 210 (310)
T PF12048_consen 134 PNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARY 210 (310)
T ss_pred CccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHH
Confidence 00000 0 0112233455666777777777753 359999999999999999
Q ss_pred HHhCCC-cccEEEEeccCCCCCCCCCCCccccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHH
Q 002194 777 LAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (954)
Q Consensus 777 a~~~p~-~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~ 855 (954)
+...+. .+.++|.+++-.... . ........+.+++.|+|=|++.. .... ...+.+-.
T Consensus 211 la~~~~~~~daLV~I~a~~p~~---------~----------~n~~l~~~la~l~iPvLDi~~~~-~~~~--~~~a~~R~ 268 (310)
T PF12048_consen 211 LAEKPPPMPDALVLINAYWPQP---------D----------RNPALAEQLAQLKIPVLDIYSAD-NPAS--QQTAKQRK 268 (310)
T ss_pred HhcCCCcccCeEEEEeCCCCcc---------h----------hhhhHHHHhhccCCCEEEEecCC-ChHH--HHHHHHHH
Confidence 988753 478999998732100 0 01122234567889999999887 3321 23333222
Q ss_pred HHHHhCC-CcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 856 NALKGHG-ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 856 ~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
...+... ..++-+.+++..|..... ...+.++|..||+++
T Consensus 269 ~~a~r~~~~~YrQ~~L~~~~~~~~~~--~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 269 QAAKRNKKPDYRQIQLPGLPDNPSGW--QEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHhccCCCceeEecCCCCCChhhH--HHHHHHHHHHHHHhh
Confidence 3333332 456777777777765322 223888999999875
No 370
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.08 E-value=0.15 Score=51.69 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=94.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCe---EEEEEecCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST---LLVCTIPLLR 266 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~---~l~~~~~~~~ 266 (954)
.+....|-|=..-+..++ +-...|-++|+.+-+....+..++. +.+-+|||=.. +|+...
T Consensus 103 ~iss~~WyP~DtGmFtss--------SFDhtlKVWDtnTlQ~a~~F~me~~-----VYshamSp~a~sHcLiA~gt---- 165 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSS--------SFDHTLKVWDTNTLQEAVDFKMEGK-----VYSHAMSPMAMSHCLIAAGT---- 165 (397)
T ss_pred eeeeeEEeeecCceeecc--------cccceEEEeecccceeeEEeecCce-----eehhhcChhhhcceEEEEec----
Confidence 567778888544444332 2345677778777665555444443 55667887542 333220
Q ss_pred CCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEcC-CC-ccccccccCCCC
Q 002194 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PP-AVYTSLDPSPDE 343 (954)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~-~~-~~~~~~~~SpDG 343 (954)
...++-+-|+ +|.-.... .. +.+..+.|||-.
T Consensus 166 ---------------------------------------------r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 166 ---------------------------------------------RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ---------------------------------------------CCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 2245677888 88654443 33 888999999999
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEecc--CceEEEeccCCCcccCCc--cccccccCccceeeccCCCCceEE
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPI--AFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~--g~~~~~l~~~~~~~~~p~--~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
.||+++... ++.+.+||+. .+-.+.+..+... ..|+ +...+.+.+.+++|+.||..++..
T Consensus 201 e~vLatgsa------------Dg~irlWDiRrasgcf~~lD~hn~k-~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 201 EWVLATGSA------------DGAIRLWDIRRASGCFRVLDQHNTK-RPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred eeEEEecCC------------CceEEEEEeecccceeEEeecccCc-cCccccccccccceeeeeeecccchhhhhc
Confidence 999998743 3489999987 3455555544321 1222 223445566789999999876654
No 371
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0044 Score=73.51 Aligned_cols=169 Identities=10% Similarity=0.098 Sum_probs=91.7
Q ss_pred ccccccccCCCCc-EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk-~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
+.+..+.|++.+. .||-.. . .++|+|||++.-+ .+.+.. .. .....+..++|...-
T Consensus 117 G~V~gLDfN~~q~nlLASGa-~------------~geI~iWDlnn~~-tP~~~~----~~-----~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGA-D------------DGEILIWDLNKPE-TPFTPG----SQ-----APPSEIKCLSWNRKV 173 (1049)
T ss_pred CceeeeeccccCCceeeccC-C------------CCcEEEeccCCcC-CCCCCC----CC-----CCcccceEeccchhh
Confidence 7788899999987 444443 2 2389999998411 111110 00 011233456665544
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCceeeccCCce-EEEEEeccccceEEEEEc
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLA-LVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~~d 487 (954)
+.|+.. .+..+...+||+ .....+..+... ...+..+.|.||+.. |+.+++++. ...|-..|
T Consensus 174 qhILAS------------~s~sg~~~iWDl--r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~-~PviqlWD 238 (1049)
T KOG0307|consen 174 SHILAS------------GSPSGRAVIWDL--RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS-APVIQLWD 238 (1049)
T ss_pred hHHhhc------------cCCCCCceeccc--cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC-CceeEeec
Confidence 443332 133456777886 222233344333 345678999999765 444444443 23344444
Q ss_pred CCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeE
Q 002194 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (954)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 565 (954)
+.-. ..|..+...+...+.+ +.|.+.+..++.... ...+++.|+.++|+.-
T Consensus 239 lR~a-ssP~k~~~~H~~Gils------lsWc~~D~~lllSsg--------------------kD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 239 LRFA-SSPLKILEGHQRGILS------LSWCPQDPRLLLSSG--------------------KDNRIICWNPNTGEVL 289 (1049)
T ss_pred cccc-CCchhhhcccccceee------eccCCCCchhhhccc--------------------CCCCeeEecCCCceEe
Confidence 3322 1344444444444444 789988865555541 2335999999998753
No 372
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.08 E-value=0.11 Score=52.96 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (954)
=...+||||+..|||+.. ...|.++|+.|.+...+
T Consensus 46 WRkl~WSpD~tlLa~a~S---------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAES---------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred heEEEECCCCcEEEEEcC---------CCeEEEEecccceeEEc
Confidence 355789999999999763 56778889888666544
No 373
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.05 E-value=0.015 Score=60.71 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=57.3
Q ss_pred CCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHH
Q 002194 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (954)
Q Consensus 828 ~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (954)
...+|.|++.++.|.+++ .++.+++.+..++.|.+++...|++.+|.-....+.+++.+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 346899999999999999 99999999999999999999999999998777777888888777763
No 374
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.01 E-value=0.011 Score=60.59 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCC---CcccEEEEeccC
Q 002194 740 VACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (954)
Q Consensus 740 ~~D~~~av~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (954)
.+-+..+++++.+.. ...+++|.++||||||.+|-.++...+ +.++.+|.++.+
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 344455566665543 456789999999999999888876543 468888887654
No 375
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.01 E-value=0.031 Score=63.01 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=37.9
Q ss_pred eEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCce
Q 002194 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (954)
Q Consensus 553 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~ 621 (954)
.|.+||+.+|+.++.+...-. .+. .++ ....+|.|-+++.+++..+ |.++|..+|+.
T Consensus 619 nirif~i~sgKq~k~FKgs~~--~eG--~lI----Kv~lDPSgiY~atScsdkt----l~~~Df~sgEc 675 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRD--HEG--DLI----KVILDPSGIYLATSCSDKT----LCFVDFVSGEC 675 (1080)
T ss_pred ceEEEeccccceeeeeccccc--CCC--ceE----EEEECCCccEEEEeecCCc----eEEEEeccchh
Confidence 499999999999988876632 011 111 2456788888887777544 77777766653
No 376
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.99 E-value=0.016 Score=60.26 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=84.3
Q ss_pred ceEEEEEe-CC-ceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002194 314 TQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (954)
Q Consensus 314 ~~l~~~~~-~G-~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p 391 (954)
..|+++|+ .+ .++.+...-....++|+|.+ ..|+...+ +.++|.+|...-. +++..+.
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea--fnF~~a~E-----------D~nlY~~DmR~l~-~p~~v~~------ 269 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEA--FNFVAANE-----------DHNLYTYDMRNLS-RPLNVHK------ 269 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccc--cceeeccc-----------cccceehhhhhhc-ccchhhc------
Confidence 45889998 55 34444444445678999933 44544332 2378888765211 1111111
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCce
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~ 469 (954)
+.-..+-++.|||-|+.++-. +-...|.++.+ ..+..+.+ +.--..+..+.||-|.++
T Consensus 270 ----dhvsAV~dVdfsptG~Efvsg-------------syDksIRIf~~---~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 270 ----DHVSAVMDVDFSPTGQEFVSG-------------SYDKSIRIFPV---NHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred ----ccceeEEEeccCCCcchhccc-------------cccceEEEeec---CCCcchhhhhHhhhheeeEEEEeccccE
Confidence 112345678999999987654 33446677765 44555544 444456788999999999
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (954)
|+..+++.+ .+||......
T Consensus 330 i~SGSdd~n--vRlWka~Ase 348 (433)
T KOG0268|consen 330 IISGSDDGN--VRLWKAKASE 348 (433)
T ss_pred EEecCCCcc--eeeeecchhh
Confidence 998877665 8999987665
No 377
>COG3150 Predicted esterase [General function prediction only]
Probab=96.99 E-value=0.012 Score=54.74 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCCCCCCcccc-----ch
Q 002194 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----RT 809 (954)
Q Consensus 735 ~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~~~~~~~~~-----~~ 809 (954)
+..+..+.+..+|..+ .|+ .++|+|-|.||+.|.+++.+. . +++++ ++|..-......++..+. +.
T Consensus 41 ~p~~a~~ele~~i~~~-----~~~-~p~ivGssLGGY~At~l~~~~-G-irav~-~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQEL-----GDE-SPLIVGSSLGGYYATWLGFLC-G-IRAVV-FNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHc-----CCC-CceEEeecchHHHHHHHHHHh-C-Chhhh-cCCCcCchhhhhhhcCCCCCCCCcc
Confidence 3455566655655443 222 389999999999999999887 2 55443 344322111000111100 00
Q ss_pred hhh-cHHHHHhcCcccccCCCCCC--EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHH
Q 002194 810 LWE-ATSTYVEMSPFMSANKLKKP--ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHV 886 (954)
Q Consensus 810 ~~~-~~~~~~~~sp~~~~~~~~~P--~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 886 (954)
.|. ........ -...+..++.| +.++.-+.|++.. ..++.+.+.... ..+.+|.+|.|.. ..+.
T Consensus 112 ~y~le~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~~-------~~V~dgg~H~F~~---f~~~ 178 (191)
T COG3150 112 EYVLESRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPCY-------EIVWDGGDHKFKG---FSRH 178 (191)
T ss_pred eEEeehhhHHHH-HHhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhhh-------heeecCCCccccc---hHHh
Confidence 110 00001110 11233444554 4444555588866 666666666543 4467888999854 3466
Q ss_pred HHHHHHHHH
Q 002194 887 LWETDRWLQ 895 (954)
Q Consensus 887 ~~~i~~fl~ 895 (954)
++.|..|..
T Consensus 179 l~~i~aF~g 187 (191)
T COG3150 179 LQRIKAFKG 187 (191)
T ss_pred HHHHHHHhc
Confidence 778888753
No 378
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.99 E-value=0.0045 Score=70.63 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=87.6
Q ss_pred EEEEEc-CCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc---cHHHHHHHHCCcEEE
Q 002194 641 LIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG---STSVLLWLARGFAIL 716 (954)
Q Consensus 641 ~~~~~~-~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~G~~V~ 716 (954)
.+.+.. ..+..+..|++...+ ++. ..|+|||++|||.++.-......-+|.....-+ ......|...+..|+
T Consensus 51 y~~v~~~~~~~~lFyw~~~s~~-~~~---~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~ 126 (462)
T PTZ00472 51 YFDIPGNQTDKHYFYWAFGPRN-GNP---EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIY 126 (462)
T ss_pred EEEeCCCCCCceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEE
Confidence 344432 235678888886543 222 379999999999877554444444443332211 011224556666555
Q ss_pred EcCCCCCCCCCCcccc--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC----C------Cc
Q 002194 717 GGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA----P------HL 783 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~----p------~~ 783 (954)
.-...| .|++..... ........+|+.++++...++ +.....++.|+|+||||..+..++.+- . =.
T Consensus 127 iDqP~G-~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~in 205 (462)
T PTZ00472 127 VDQPAG-VGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYIN 205 (462)
T ss_pred EeCCCC-cCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceee
Confidence 521211 233322111 122356678888888766543 444557899999999999887777542 0 13
Q ss_pred ccEEEEeccCCC
Q 002194 784 FCCGIARSGAYN 795 (954)
Q Consensus 784 ~~a~v~~~~~~~ 795 (954)
++++++..|..+
T Consensus 206 LkGi~IGNg~~d 217 (462)
T PTZ00472 206 LAGLAVGNGLTD 217 (462)
T ss_pred eEEEEEeccccC
Confidence 788888888765
No 379
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.29 Score=57.15 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccC-CCCCCceeeeecCCCCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~g~~~~~~~lt~~~~~~ 189 (954)
..-.++||.|+.+|..-.+ +.|.+|.--. ++.....+.+.- +..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d---------------------------------GrI~vw~d~~~~~~~~t~t~lHW--H~~ 252 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD---------------------------------GRILVWRDFGSSDDSETCTLLHW--HHD 252 (792)
T ss_pred ceeEEeccccceEEEeccC---------------------------------CcEEEEeccccccccccceEEEe--ccc
Confidence 4457889999888876554 4567775322 111123344433 223
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+||+||..|+- +.-...|-++.+++++ +++.+. +.+.+..+.|||||......
T Consensus 253 ~V~~L~fS~~G~~LlS---------GG~E~VLv~Wq~~T~~-kqfLPR----Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS---------GGREGVLVLWQLETGK-KQFLPR----LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEee---------cccceEEEEEeecCCC-cccccc----cCCeeEEEEEcCCCCeEEEE
Confidence 6888999999998887 2235566777777877 444322 23337799999999877765
No 380
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.94 E-value=0.0093 Score=66.95 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+..++.||+|+.||..-.. ..-.. ..|++|+... - .+...|.. +.-.
T Consensus 528 v~~l~~s~~gnliASaCKS----------------------~~~eh------AvI~lw~t~~-W--~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKS----------------------SLKEH------AVIRLWNTAN-W--LQVQELEG--HSLT 574 (764)
T ss_pred EEEEEecCCCCEEeehhhh----------------------CCccc------eEEEEEeccc-h--hhhheecc--cceE
Confidence 6678999999999997653 11111 3689998732 1 12223322 2236
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+....|||||++|+-+++ +-...||-.--+-........ ......++-++.|+||++.++.+
T Consensus 575 VT~l~FSpdg~~LLsvsR-------DRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSR-------DRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEECCCCcEEEEeec-------CceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEe
Confidence 899999999999999874 336666655211111111111 11223346689999999987655
No 381
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.89 E-value=0.0052 Score=70.40 Aligned_cols=88 Identities=24% Similarity=0.165 Sum_probs=59.4
Q ss_pred HHHHHH-CCcEEEEcCCCCCCCCCCcccc-------hhh--HHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHH
Q 002194 705 VLLWLA-RGFAILGGPTTPIIGEGDEEAN-------DRF--VEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMT 773 (954)
Q Consensus 705 ~~~la~-~G~~V~~~~~~~~~G~G~~~~~-------~~~--~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~a 773 (954)
...||. .|-.|+. ...+=||.+..- -.+ ..+.+.|+...++++..+. ..+..+++++|.||||.+|
T Consensus 51 ~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 344554 5666666 333446666431 111 5688999999999998663 3455699999999999999
Q ss_pred HHHHHhCCCcccEEEEeccCCC
Q 002194 774 ANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
+|+-.++|+.|.|+++.+++..
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999887654
No 382
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.89 E-value=0.054 Score=57.02 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=40.4
Q ss_pred ceEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE
Q 002194 314 TQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (954)
Q Consensus 314 ~~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~ 378 (954)
..+.++++ +|+ ...+..+..+.+++|+-||..++.+..+. .|.|||...+++
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDK-------------kvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDK-------------KVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccc-------------eeEEEcCCCCcE
Confidence 45677788 774 55566558899999999999999988543 899999986654
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.25 Score=50.23 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=67.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..-.|||||++|+.+.++-. .-.+-|-+||.+.+ ..++-..+. .--|.-.+.|.+||+
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd--------~~rGViGvYd~r~~-fqrvgE~~t----------~GiGpHev~lm~DGr 174 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFD--------PNRGVIGVYDAREG-FQRVGEFST----------HGIGPHEVTLMADGR 174 (366)
T ss_pred eeecccccCCCCcEEEeecCCCC--------CCCceEEEEecccc-cceeccccc----------CCcCcceeEEecCCc
Confidence 45567789999999988775532 12346889988733 222222221 113456789999999
Q ss_pred CceEEE---Eec-cCCCccccccC-CCeEEEEecCCCCCCCceEEee----cccccCceeeccCCceEEEEEeccc
Q 002194 412 STLYWA---ETQ-DGGDAKVEVTP-RDIIYTQQAEPVQGEGPEILHK----LDLRYGGISWCDDSLALVYESWYKT 478 (954)
Q Consensus 412 ~i~~~~---~~~-~~~~~~~~~~~-~~~l~~~~~~~~~g~~~~~l~~----~~~~~~~~~~spDg~~l~~~~~~~~ 478 (954)
.++... +.. +-+..+...+. .-.+.+++. .+|.-..+.+- ....+..+...+||+ |+|.....+
T Consensus 175 tlvvanGGIethpdfgR~~lNldsMePSlvlld~--atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G 247 (366)
T COG3490 175 TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA--ATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG 247 (366)
T ss_pred EEEEeCCceecccccCccccchhhcCccEEEEec--cccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC
Confidence 888761 111 11111111111 124566663 35543333321 123455677788886 555554433
No 384
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.86 E-value=0.04 Score=59.50 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=86.3
Q ss_pred ceEEEEEe-CC-ceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCccc
Q 002194 314 TQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (954)
Q Consensus 314 ~~l~~~~~-~G-~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~ 389 (954)
+.|.+..+ ++ ..+.++.+ ..++.+.+||-.|+++....+. +.+.+||+.|....- ...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~--~~~---- 204 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIF--HAS---- 204 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCccc--chh----
Confidence 34666666 55 34445544 4456788999999888776443 389999999754221 100
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 390 ~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
..+..-.+.+.|||-...|+..+ +-..+|++||. .......-...+.....++|+++|.+
T Consensus 205 -----~~HsAP~~gicfspsne~l~vsV------------G~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 205 -----EAHSAPCRGICFSPSNEALLVSV------------GYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred -----hhccCCcCcceecCCccceEEEe------------cccceEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 01112336789999888776652 33458999985 22222111233455678999999999
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
|+.... +.+|+.+|+.+.
T Consensus 265 L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGNS----KGELIAYDMRST 282 (673)
T ss_pred EEeecC----CceEEEEecccC
Confidence 987642 357999998875
No 385
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.85 E-value=0.029 Score=58.63 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=81.7
Q ss_pred EcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccce
Q 002194 327 EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 327 ~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
.++.. ..+.+++|||..+-++++... ++.|.|||+..+.. ..+... .....++-+
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~k-----------Ah~sDVNVI 308 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTK-----------AHNSDVNVI 308 (440)
T ss_pred cccccccchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEee-----------ccCCceeeE
Confidence 34444 778899999998888777644 34899999985522 222221 122345678
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCce-EEeecccccCceeeccCCceEEEEEeccccceEE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~-~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
+|+-+-..|+.- +..+.+.+||+.-+..+++. .+.-+...+.++.|+|....++.++..++ +..|
T Consensus 309 SWnr~~~lLasG-------------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~-Qiti 374 (440)
T KOG0302|consen 309 SWNRREPLLASG-------------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN-QITI 374 (440)
T ss_pred EccCCcceeeec-------------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC-cEEE
Confidence 898766633332 33557777886444555443 44566778899999998777666655554 3778
Q ss_pred EEEcCCC
Q 002194 484 WVISPGS 490 (954)
Q Consensus 484 ~~~d~~~ 490 (954)
|.+.++.
T Consensus 375 WDlsvE~ 381 (440)
T KOG0302|consen 375 WDLSVEA 381 (440)
T ss_pred EEeeccC
Confidence 8777655
No 386
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.85 E-value=0.0044 Score=69.62 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=62.5
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 782 (954)
.....|++.||.+ . .+..|.|..+.........++++.+.++.+.+.. ...++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4567788999976 3 3455666555443334555677778888776653 23589999999999999999988775
Q ss_pred ----cccEEEEeccCCC
Q 002194 783 ----LFCCGIARSGAYN 795 (954)
Q Consensus 783 ----~~~a~v~~~~~~~ 795 (954)
.++..|++++.+.
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3688888887655
No 387
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=96.83 E-value=0.038 Score=55.83 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=95.2
Q ss_pred CCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCC-eEEEEEeeccccCCCCceEEEEEECCCCc
Q 002194 152 KCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGK 230 (954)
Q Consensus 152 ~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~-~iaf~~~~~~~~~~~~~~~l~~~d~~~g~ 230 (954)
++......+|+..|.+||.++ .+..-. ++-.+.+..-+|||=.. +-+... +....+|-+.|+.+|.
T Consensus 113 DtGmFtssSFDhtlKVWDtnT----lQ~a~~--F~me~~VYshamSp~a~sHcLiA~-------gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNT----LQEAVD--FKMEGKVYSHAMSPMAMSHCLIAA-------GTRDVQVRLCDIASGS 179 (397)
T ss_pred cCceeecccccceEEEeeccc----ceeeEE--eecCceeehhhcChhhhcceEEEE-------ecCCCcEEEEeccCCc
Confidence 444455566778899999865 332222 32234677778999443 333332 2236788889999988
Q ss_pred eeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccc
Q 002194 231 ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310 (954)
Q Consensus 231 ~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~ 310 (954)
......+...+ +-.+.|||...++.++.. .++... .+++
T Consensus 180 ~sH~LsGHr~~----vlaV~Wsp~~e~vLatgs--------------------aDg~ir-----------------lWDi 218 (397)
T KOG4283|consen 180 FSHTLSGHRDG----VLAVEWSPSSEWVLATGS--------------------ADGAIR-----------------LWDI 218 (397)
T ss_pred ceeeeccccCc----eEEEEeccCceeEEEecC--------------------CCceEE-----------------EEEe
Confidence 76665554433 668999999999988721 110000 0000
Q ss_pred c-ccceEEEEEe-CCceeEcC--CC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce
Q 002194 311 Y-ATTQLVLVSL-DGTVKEIG--PP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (954)
Q Consensus 311 ~-~~~~l~~~~~-~G~~~~l~--~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~ 377 (954)
. ..+.+..+|. .++.-++. +. +.+.+.+|+.||++++....++ .+.+|+...++
T Consensus 219 Rrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-------------r~r~wn~~~G~ 279 (397)
T KOG4283|consen 219 RRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-------------RIRVWNMESGR 279 (397)
T ss_pred ecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-------------ceEEeecccCc
Confidence 0 1233445666 44322221 11 6678899999999998876433 77888877443
No 388
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.41 Score=55.93 Aligned_cols=200 Identities=10% Similarity=0.090 Sum_probs=112.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+-..+|.|.--||+..- .+|.-+||-+...+ ...-+...+ +.+..+.|.|++-+++...+
T Consensus 11 RvKglsFHP~rPwILtsl-------HsG~IQlWDYRM~t--li~rFdeHd----GpVRgv~FH~~qplFVSGGD------ 71 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL-------HSGVIQLWDYRMGT--LIDRFDEHD----GPVRGVDFHPTQPLFVSGGD------ 71 (1202)
T ss_pred cccceecCCCCCEEEEee-------cCceeeeehhhhhh--HHhhhhccC----CccceeeecCCCCeEEecCC------
Confidence 566689999888998754 45677888665432 222222222 23788999999986664300
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC-ccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~-~~~~~~~~SpDGk~l~~ 348 (954)
| ..-.+|.+....-.-.|... ..++...|.+.=-||+.
T Consensus 72 ----------------------------------D-------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 72 ----------------------------------D-------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS 110 (1202)
T ss_pred ----------------------------------c-------cEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence 0 11123333222222333444 77888999999999998
Q ss_pred EeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
.|++ ++|.||+-..+ .+..++.+... +--..|.|....|+-.
T Consensus 111 ASDD-------------QTIrIWNwqsr~~iavltGHnHY-------------VMcAqFhptEDlIVSa----------- 153 (1202)
T KOG0292|consen 111 ASDD-------------QTIRIWNWQSRKCIAVLTGHNHY-------------VMCAQFHPTEDLIVSA----------- 153 (1202)
T ss_pred ccCC-------------CeEEEEeccCCceEEEEecCceE-------------EEeeccCCccceEEEe-----------
Confidence 8844 48999998754 44555554322 2223466644433332
Q ss_pred cccCCCeEEEEecCCC-----------------------CC--C-Cc-eEEeecccccCceeeccCCceEEEEEeccccc
Q 002194 428 EVTPRDIIYTQQAEPV-----------------------QG--E-GP-EILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~-----------------------~g--~-~~-~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 480 (954)
+-...|.+||+..+ -| . -. ..|.+++..++..+|.|---.|+..+++ ++
T Consensus 154 --SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD--Rq 229 (1202)
T KOG0292|consen 154 --SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD--RQ 229 (1202)
T ss_pred --cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc--ce
Confidence 22223444443000 00 0 01 2234566667778888876666655443 45
Q ss_pred eEEEEEcCCC
Q 002194 481 TRTWVISPGS 490 (954)
Q Consensus 481 ~~l~~~d~~~ 490 (954)
..||+++...
T Consensus 230 VKlWrmnetK 239 (1202)
T KOG0292|consen 230 VKLWRMNETK 239 (1202)
T ss_pred eeEEEecccc
Confidence 8899987543
No 389
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.82 E-value=0.22 Score=53.71 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=126.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
++|-+|++...+.. ..+.....+++..++...|+|....-+|... ....|-..|++++....+......
T Consensus 210 G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS--------yDGtiR~~D~~~~i~e~v~s~~~d-- 278 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSS--------YDGTIRLQDFEGNISEEVLSLDTD-- 278 (498)
T ss_pred CcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeec--------cCceeeeeeecchhhHHHhhcCcc--
Confidence 57889999422211 1222233345558999999996654444332 356788889888766655544321
Q ss_pred cccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-
Q 002194 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~- 321 (954)
+..+.++.++.+...+++.. ..+.+-++|+
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~-------------------------------------------------~~G~f~~iD~R 309 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGD-------------------------------------------------NVGNFNVIDLR 309 (498)
T ss_pred ceeeeeccccCCCccEEEee-------------------------------------------------cccceEEEEee
Confidence 11256777777776666651 0112334555
Q ss_pred -CCc-eeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC--ceEE-EeccCCCcccCCcccc
Q 002194 322 -DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVR-ELCDLPLAEDIPIAFN 395 (954)
Q Consensus 322 -~G~-~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g--~~~~-~l~~~~~~~~~p~~~~ 395 (954)
+|. ...+... ..+.++++.|--.+++.++.. +....|||+.. ++.. .|...+
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~------------D~T~kIWD~R~l~~K~sp~lst~~---------- 367 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASL------------DQTAKIWDLRQLRGKASPFLSTLP---------- 367 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeeccc------------CcceeeeehhhhcCCCCcceeccc----------
Confidence 442 3333333 578899999998887766533 23777999872 2221 122222
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC-CCCCceEEeeccc------ccCceeeccCCc
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV-QGEGPEILHKLDL------RYGGISWCDDSL 468 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~g~~~~~l~~~~~------~~~~~~~spDg~ 468 (954)
++..+.+..|||+|-.|+-. ...+.|.+++..-. ..-++.....+.. ......|.||-.
T Consensus 368 -HrrsV~sAyFSPs~gtl~TT-------------~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 368 -HRRSVNSAYFSPSGGTLLTT-------------CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred -ccceeeeeEEcCCCCceEee-------------ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 22345678899999885554 34556777763000 1111111111111 122368999877
Q ss_pred eEEEEEeccccceEEEEEcCCCC
Q 002194 469 ALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.|+..... ..|=+++..++
T Consensus 434 li~vg~~~----r~IDv~~~~~~ 452 (498)
T KOG4328|consen 434 LIVVGRYP----RPIDVFDGNGG 452 (498)
T ss_pred EEEEeccC----cceeEEcCCCC
Confidence 66665332 23666666664
No 390
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.80 E-value=0.059 Score=54.39 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=101.0
Q ss_pred EEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccch
Q 002194 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND 733 (954)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~ 733 (954)
.|+..|+. .-.||.+-||.|.+.. |+-+ +..+.+.|+++||+|++-+|... +-+.
T Consensus 8 ~wvl~P~~--------P~gvihFiGGaf~ga~--------P~it---Yr~lLe~La~~Gy~ViAtPy~~t------fDH~ 62 (250)
T PF07082_consen 8 SWVLIPPR--------PKGVIHFIGGAFVGAA--------PQIT---YRYLLERLADRGYAVIATPYVVT------FDHQ 62 (250)
T ss_pred cEEEeCCC--------CCEEEEEcCcceeccC--------cHHH---HHHHHHHHHhCCcEEEEEecCCC------CcHH
Confidence 46667752 1247777787554322 1111 23456678899999999555211 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC---CCCCC------
Q 002194 734 RFVEQLVACAEAAVEEVVRRGVAHPS--KIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTPFG------ 802 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~--ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~---~~~~~------ 802 (954)
.........+..+++.|.++...++. +++-+|||+|+-+-+.+....+..-++-|.++ +-|.. ..++.
T Consensus 63 ~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~ 141 (250)
T PF07082_consen 63 AIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPA 141 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccc
Confidence 22334455666777888776544433 68889999999999888776643334445554 21110 01110
Q ss_pred Cc-cccchhhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCCcC
Q 002194 803 FQ-NEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHGY 877 (954)
Q Consensus 803 ~~-~~~~~~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~ 877 (954)
+. +....+-+......+.. . -...|+|-=.+|. .+++..+.+.|+... .-++....+| +|.-
T Consensus 142 l~~EF~PsP~ET~~li~~~Y------~-~~rnLLIkF~~D~-----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HLT 205 (250)
T PF07082_consen 142 LRLEFTPSPEETRRLIRESY------Q-VRRNLLIKFNDDD-----IDQTDELEQILQQRFPDMVSIQTLPG-NHLT 205 (250)
T ss_pred cccCccCCHHHHHHHHHHhc------C-CccceEEEecCCC-----ccchHHHHHHHhhhccccceEEeCCC-CCCC
Confidence 00 00011112122111111 1 1335666666675 578888989888653 3366777886 8853
No 391
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.78 E-value=0.07 Score=54.67 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=49.5
Q ss_pred eceEEEEccCCCCCCceeeeecCC-CCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCcc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~-~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (954)
+.|.+|++ +....+..+. +...+++.+..|-|+ ||.+.. + ...|-.+|+-.|..-.++.....
T Consensus 107 G~i~iw~~------~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg------~--D~~lr~WNLV~Gr~a~v~~L~~~- 170 (362)
T KOG0294|consen 107 GHIIIWRV------GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVG------G--DQVLRTWNLVRGRVAFVLNLKNK- 170 (362)
T ss_pred CcEEEEEc------CCeEEeeeecccccccceeEecCCCc-eEEEEc------C--CceeeeehhhcCccceeeccCCc-
Confidence 57888887 3333333222 223699999999987 555432 2 44555667666655445444443
Q ss_pred ccccccceeEecCCeEEEEE
Q 002194 242 LNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 242 ~~~~~~~~~wspDG~~l~~~ 261 (954)
...+.|+|.|..+++.
T Consensus 171 ----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 171 ----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred ----ceeeEEcCCCCEEEEE
Confidence 3468999999988876
No 392
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.76 E-value=0.27 Score=51.32 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=123.8
Q ss_pred eeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee-eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEE
Q 002194 144 LAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI-EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVW 222 (954)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~-~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~ 222 (954)
+..+.++|........+.+..|.|||+.+ ++.+ .|+++- ..+..+++|+---++.-+. +..+|-
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlat----g~LkltltGhi--~~vr~vavS~rHpYlFs~g---------edk~VK 218 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLAT----GQLKLTLTGHI--ETVRGVAVSKRHPYLFSAG---------EDKQVK 218 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEccc----CeEEEeecchh--heeeeeeecccCceEEEec---------CCCeeE
Confidence 33344444443333334447899999965 4422 233322 3688889998666554432 467889
Q ss_pred EEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCc
Q 002194 223 VADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDE 302 (954)
Q Consensus 223 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~ 302 (954)
.+|++..+..+-..+.-.. +..+.-.|--++|+...
T Consensus 219 CwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~g---------------------------------------- 254 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTGG---------------------------------------- 254 (460)
T ss_pred EEechhhhhHHHhccccce----eEEEeccccceeEEecC----------------------------------------
Confidence 9999887765443332211 34555667777776541
Q ss_pred cccccccccccceEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceE
Q 002194 303 YDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFV 378 (954)
Q Consensus 303 ~d~~~~~~~~~~~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~ 378 (954)
..+.+-++|+ +. .+..+... ..+.++.+-|-.-.|+..+.+ ..|.+||+. |+..
T Consensus 255 ---------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 255 ---------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTM 312 (460)
T ss_pred ---------CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCcee
Confidence 1122334454 33 34444433 555566666544455555533 389999998 5566
Q ss_pred EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeeccccc
Q 002194 379 RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY 458 (954)
Q Consensus 379 ~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~ 458 (954)
..++.+. ..++.+...|+-...+- ...+.+-.|++ ..|.-...+..+...+
T Consensus 313 ~tlt~hk-------------ksvral~lhP~e~~fAS--------------as~dnik~w~~--p~g~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 313 ITLTHHK-------------KSVRALCLHPKENLFAS--------------ASPDNIKQWKL--PEGEFLQNLSGHNAII 363 (460)
T ss_pred Eeeeccc-------------ceeeEEecCCchhhhhc--------------cCCccceeccC--Cccchhhcccccccee
Confidence 6677654 23455666664432211 12334445554 2333333344445555
Q ss_pred CceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..++-..||- +++..++ ..|+..|..+|
T Consensus 364 ntl~~nsD~v--~~~G~dn---g~~~fwdwksg 391 (460)
T KOG0285|consen 364 NTLSVNSDGV--LVSGGDN---GSIMFWDWKSG 391 (460)
T ss_pred eeeeeccCce--EEEcCCc---eEEEEEecCcC
Confidence 5555555552 3332222 46888887775
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.47 Score=53.26 Aligned_cols=230 Identities=12% Similarity=0.135 Sum_probs=130.5
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCC
Q 002194 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (954)
Q Consensus 108 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~ 187 (954)
.+++.++.|.|---+++-.-.. +++.||+..+. +.-+...++.
T Consensus 13 SdRVKsVd~HPtePw~la~Lyn---------------------------------G~V~IWnyetq-tmVksfeV~~--- 55 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYN---------------------------------GDVQIWNYETQ-TMVKSFEVSE--- 55 (794)
T ss_pred CCceeeeecCCCCceEEEeeec---------------------------------CeeEEEecccc-eeeeeeeecc---
Confidence 4466777788877777665443 47888887431 1112223332
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
..+....|-+--.||+..+ ...+|.+++..+++....+...... +..++-.|.--.+..++
T Consensus 56 -~PvRa~kfiaRknWiv~Gs---------DD~~IrVfnynt~ekV~~FeAH~Dy----IR~iavHPt~P~vLtsS----- 116 (794)
T KOG0276|consen 56 -VPVRAAKFIARKNWIVTGS---------DDMQIRVFNYNTGEKVKTFEAHSDY----IRSIAVHPTLPYVLTSS----- 116 (794)
T ss_pred -cchhhheeeeccceEEEec---------CCceEEEEecccceeeEEeeccccc----eeeeeecCCCCeEEecC-----
Confidence 2577788888888988844 4677888888787665554444333 55666666655555431
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC--ccccccccCC-CCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP--AVYTSLDPSP-DEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~--~~~~~~~~Sp-DGk 344 (954)
. | ..-.+|.++-.=...+..++ ..+..++|.| |-.
T Consensus 117 ----------------D-------------------D-------m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 117 ----------------D-------------------D-------MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred ----------------C-------------------c-------cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 1 1 12223333321134444444 6678899999 556
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
..|..+.+ .++.+|.+..... .+++.++..|+..+.|-+-|.+=+..+.
T Consensus 155 tFaS~sLD-------------rTVKVWslgs~~~------------nfTl~gHekGVN~Vdyy~~gdkpylIsg------ 203 (794)
T KOG0276|consen 155 TFASASLD-------------RTVKVWSLGSPHP------------NFTLEGHEKGVNCVDYYTGGDKPYLISG------ 203 (794)
T ss_pred ceeeeecc-------------ccEEEEEcCCCCC------------ceeeeccccCcceEEeccCCCcceEEec------
Confidence 66666643 3888998764321 1122234466777777665544333311
Q ss_pred ccccccCCCeEEEEecCCCCCC-CceEEeecccccCceeeccCCceEEEEE
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~-~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
.....+-+||. ++. -.+.|.++...++.+.|.|.=-.|+..+
T Consensus 204 -----aDD~tiKvWDy---Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 204 -----ADDLTIKVWDY---QTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred -----CCCceEEEeec---chHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 22345677875 333 3455666777777777776555444444
No 394
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.69 E-value=0.02 Score=58.56 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=53.4
Q ss_pred eeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEE
Q 002194 146 GLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD 225 (954)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d 225 (954)
++...+..+...+.+-+.+-|+|....+|+-.+.-.|..+ +.....+.|||.+..+|..+. .-...|+-+.
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi--NrAAt~V~WsP~enkFAVgSg-------ar~isVcy~E 130 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI--NRAATCVKWSPKENKFAVGSG-------ARLISVCYYE 130 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEe--ccceeeEeecCcCceEEeccC-------ccEEEEEEEe
Confidence 3333333333333333357788887555533333333332 346788999999999887431 1123344333
Q ss_pred CCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 226 VDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 226 ~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+.+.--+..+-...+...+..+.|.|++-+++..
T Consensus 131 --~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 131 --QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred --cccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 2221111111111111225688999998777755
No 395
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.027 Score=62.27 Aligned_cols=269 Identities=15% Similarity=0.155 Sum_probs=133.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.+..++-.|-|.+|+-.+ .+|...|| .+.||...+.+...+. +..++|.|.++.=+.+.......+
T Consensus 402 ~Vr~iSvdp~G~wlasGs-------dDGtvriW--Ei~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGS-------DDGTVRIW--EIATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eEEEEEecCCcceeeecC-------CCCcEEEE--EeecceEEEEEeecce-----eEEEEecCCCCceeEEEEecCceE
Confidence 677788889999999743 33444444 5568877666555553 789999998864333311111110
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE----e-CCceeEcCCCccccccccCCCCc
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS----L-DGTVKEIGPPAVYTSLDPSPDEK 344 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~----~-~G~~~~l~~~~~~~~~~~SpDGk 344 (954)
..-+ ..|..+. .-...+++........-+ +..-.|.-. + .|-...|..+..+..+.|..+|.
T Consensus 468 ivnp--~~G~~~e---------~~~t~ell~~~~~~~~p~--~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 468 IVNP--IFGDRLE---------VGPTKELLASAPNESEPD--AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD 534 (733)
T ss_pred EeCc--cccchhh---------hcchhhhhhcCCCccCCc--ccceeechhhhhhhccceEEEEecCCccceeeeecCCc
Confidence 0000 0000000 000001111000000000 011123222 1 12234455557788999999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~ 424 (954)
+|+.+..... ...+.|.++..... ..+.. ...+-+....|.|-...+++.+
T Consensus 535 YlatV~~~~~----------~~~VliHQLSK~~s----Q~PF~--------kskG~vq~v~FHPs~p~lfVaT------- 585 (733)
T KOG0650|consen 535 YLATVMPDSG----------NKSVLIHQLSKRKS----QSPFR--------KSKGLVQRVKFHPSKPYLFVAT------- 585 (733)
T ss_pred eEEEeccCCC----------cceEEEEecccccc----cCchh--------hcCCceeEEEecCCCceEEEEe-------
Confidence 9999884432 23666777653221 11110 0112234567888666555441
Q ss_pred ccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCC
Q 002194 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (954)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 504 (954)
...|.+|++ ....-.+.|..+...+..++.+|.|..|+..+.++ ++..+|++-. .+|......+..
T Consensus 586 -------q~~vRiYdL--~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~----k~~WfDldls-skPyk~lr~H~~ 651 (733)
T KOG0650|consen 586 -------QRSVRIYDL--SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK----KMCWFDLDLS-SKPYKTLRLHEK 651 (733)
T ss_pred -------ccceEEEeh--hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC----eeEEEEcccC-cchhHHhhhhhh
Confidence 235777886 22222244444555578899999999999886553 4555565543 122221111111
Q ss_pred ---CccCCCCCCC-eeeccCCcEEEEEE
Q 002194 505 ---DVYSDPGSPM-MRRTSTGTYVIAKI 528 (954)
Q Consensus 505 ---~~~~~~~~~~-~~~spdG~~l~~~~ 528 (954)
.+.-...-|. -+-|+||..++|..
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEee
Confidence 1111111222 24577888888875
No 396
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.61 E-value=0.034 Score=62.16 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=41.7
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
...|.+|| |....+...|.++...+..+..++||++++.++.+.. .+||.+..
T Consensus 192 ek~lr~wD--prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt--IrlWdLgq 244 (735)
T KOG0308|consen 192 EKDLRLWD--PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT--IRLWDLGQ 244 (735)
T ss_pred ccceEEec--cccccceeeeeccccceEEEEEcCCCCeEeecCCCce--EEeeeccc
Confidence 34678888 5777777888888888899999999999999877665 67776643
No 397
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.60 E-value=0.039 Score=59.26 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=58.2
Q ss_pred CCCCceecCCCCEEEEEecCCCC---------CccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCcee
Q 002194 110 PLPALSFSPQRDKILFLKRRALP---------PLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~ 180 (954)
..-.+++||||++||+...+... .+..+..+...+.++.+-..++.....+.+..+.+|++..- .-..
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---s~ve 280 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---SYVE 280 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh---HHHH
Confidence 34468899999999997765222 22233344444556666566666666677778889888320 1112
Q ss_pred eeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEE
Q 002194 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD 225 (954)
Q Consensus 181 ~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d 225 (954)
.+.+++ ..+..+.-..-+ +++.+ +.++....||-+.
T Consensus 281 tlyGHq--d~v~~IdaL~re-R~vtV------GgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 281 TLYGHQ--DGVLGIDALSRE-RCVTV------GGRDRTVRLWKIP 316 (479)
T ss_pred HHhCCc--cceeeechhccc-ceEEe------ccccceeEEEecc
Confidence 232322 234444333233 34443 2355677888773
No 398
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.58 E-value=0.56 Score=56.93 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=45.3
Q ss_pred CceeeccCCceEEEEEeccc-cceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcE
Q 002194 459 GGISWCDDSLALVYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (954)
Q Consensus 459 ~~~~~spDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 537 (954)
.++.|--||++++.+.-... +...+.++|.++. ...+..+.... .+.++|-|.|.+++......+ ++..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~~~s-d~~I 268 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEGL-----QHSLSWKPSGSLIAAIQCKTS-DSDI 268 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCccccc-----ccceeecCCCCeEeeeeecCC-CCcE
Confidence 35899999999887543222 1134555555531 11122222221 223899999998887665443 3367
Q ss_pred EEEecCCCC
Q 002194 538 ILLNGNGAT 546 (954)
Q Consensus 538 ~~~~~~~~~ 546 (954)
+||-++|-+
T Consensus 269 vffErNGL~ 277 (1265)
T KOG1920|consen 269 VFFERNGLR 277 (1265)
T ss_pred EEEecCCcc
Confidence 888777743
No 399
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.56 E-value=0.15 Score=60.65 Aligned_cols=128 Identities=12% Similarity=0.110 Sum_probs=80.6
Q ss_pred cEEEEEeecCCcccccccCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 344 k~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
.+|||..... .+|.+.|.+|...+.+ .... ..+.++.|||||+.|+|.+....
T Consensus 319 tkiAfv~~~~------------~~L~~~D~dG~n~~~ve~~~~-------------~~i~sP~~SPDG~~vAY~ts~e~- 372 (912)
T TIGR02171 319 AKLAFRNDVT------------GNLAYIDYTKGASRAVEIEDT-------------ISVYHPDISPDGKKVAFCTGIEG- 372 (912)
T ss_pred eeEEEEEcCC------------CeEEEEecCCCCceEEEecCC-------------CceecCcCCCCCCEEEEEEeecC-
Confidence 4688877432 2889999998877766 3322 12246789999999999432221
Q ss_pred CCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce-EEEEEeccc-------cceEEEEEcCCCCC-C
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKT-------RRTRTWVISPGSKD-V 493 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~-l~~~~~~~~-------~~~~l~~~d~~~~~-~ 493 (954)
++++..||+.++ ...+.....|.-....+..-...+.|.. |+|.++..+ .....|.+.-..|+ +
T Consensus 373 ------~~g~s~vYv~~L-~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 373 ------LPGKSSVYVRNL-NASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred ------CCCCceEEEEeh-hccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 023557999997 2344455666544555555555677765 788775432 12357888877664 4
Q ss_pred CcEEEecCCCC
Q 002194 494 APRILFDRSSE 504 (954)
Q Consensus 494 ~~~~l~~~~~~ 504 (954)
.|+.++++...
T Consensus 446 ~p~kl~dga~h 456 (912)
T TIGR02171 446 TPKKLFDGAYH 456 (912)
T ss_pred Cchhhhccccc
Confidence 67778776543
No 400
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.54 E-value=0.032 Score=62.90 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=72.7
Q ss_pred cccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 333 ~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
-..+++.-|.-|+++..-.++ +|.|+++..++. +........+..++ .+..-|.|-
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDr-------------nirif~i~sgKq~k~FKgs~~~eG~lI----------Kv~lDPSgi 654 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDR-------------NIRIFDIESGKQVKSFKGSRDHEGDLI----------KVILDPSGI 654 (1080)
T ss_pred eEEEeeeCCCcceEEEEeccc-------------ceEEEeccccceeeeecccccCCCceE----------EEEECCCcc
Confidence 345677788889988877443 899999985544 43333222222222 234455554
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+|+-. -....|-++|. ..|.-..+.+++...+.++.|++|=+.|+..+.+.= .-+|.++.
T Consensus 655 Y~atS-------------csdktl~~~Df--~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 655 YLATS-------------CSDKTLCFVDF--VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWKLPL 714 (1080)
T ss_pred EEEEe-------------ecCCceEEEEe--ccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEECch
Confidence 33322 11335777775 355555677888888999999999999988765532 45666654
No 401
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.54 E-value=0.097 Score=51.02 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=66.6
Q ss_pred cHHHHHHHHCCcEEEEcCCCC-CCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-
Q 002194 702 STSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH- 779 (954)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~- 779 (954)
......+-+.+|..+.+..+. +.|||.. ...+..+|+..+++++...++. +.|.++|||-|..=.++++..
T Consensus 56 ~~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~fS--t~vVL~GhSTGcQdi~yYlTnt 128 (299)
T KOG4840|consen 56 TMLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGFS--TDVVLVGHSTGCQDIMYYLTNT 128 (299)
T ss_pred HHHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCcc--cceEEEecCccchHHHHHHHhc
Confidence 356667778999998744432 3456654 2345678999999988776643 389999999999988888743
Q ss_pred -CCCcccEEEEeccCCCCC
Q 002194 780 -APHLFCCGIARSGAYNRT 797 (954)
Q Consensus 780 -~p~~~~a~v~~~~~~~~~ 797 (954)
.+..+.|+|+.+|++|.+
T Consensus 129 ~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 129 TKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cchHHHHHHHHhCccchhh
Confidence 345689999999999876
No 402
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.44 E-value=0.058 Score=54.92 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=77.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg 410 (954)
..+..++|||.-+.++..+. +++++.+|++... .... .......+-+....||.||
T Consensus 28 DsIS~l~FSP~~~~~~~A~S------------WD~tVR~wevq~~g~~~~-----------ka~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGS------------WDGTVRIWEVQNSGQLVP-----------KAQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred cchheeEeccccCceEEecc------------cCCceEEEEEecCCcccc-----------hhhhccCCCeEEEEEccCC
Confidence 77889999995444443331 4569999998742 2111 0111122334578999999
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc--eEEEEEeccccceEEEEEcC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL--ALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~l~~~d~ 488 (954)
.+++.. +-...+-+||+ ..++..++..++..+..+.|-+... -|+..+|+++ |-.+|+
T Consensus 85 skVf~g-------------~~Dk~~k~wDL---~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT----lKfWD~ 144 (347)
T KOG0647|consen 85 SKVFSG-------------GCDKQAKLWDL---ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT----LKFWDT 144 (347)
T ss_pred ceEEee-------------ccCCceEEEEc---cCCCeeeeeecccceeEEEEecCCCcceeEecccccc----eeeccc
Confidence 755443 33557888996 7779999999999999999987755 5777888876 444454
Q ss_pred CC
Q 002194 489 GS 490 (954)
Q Consensus 489 ~~ 490 (954)
..
T Consensus 145 R~ 146 (347)
T KOG0647|consen 145 RS 146 (347)
T ss_pred CC
Confidence 43
No 403
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.26 Score=55.84 Aligned_cols=62 Identities=16% Similarity=0.357 Sum_probs=35.7
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+.+..+.|.-+.+.|-. + +.+|---+|.+= .|.-....+..... ..+.++.|.-||+.|.++
T Consensus 72 ~sV~vvTWNe~~QKLTt-S------Dt~GlIiVWmly-kgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTT-S------DTSGLIIVWMLY-KGSWCEEMINNRNK---SVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred ceEEEEEeccccccccc-c------CCCceEEEEeee-cccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEE
Confidence 36777889866655543 2 244555555443 22222333332221 236689999999999877
No 404
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.42 E-value=0.0054 Score=43.04 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.6
Q ss_pred eEEeecccccCceeeccCCceEEEEEecc-ccceEEEE
Q 002194 449 EILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWV 485 (954)
Q Consensus 449 ~~l~~~~~~~~~~~~spDg~~l~~~~~~~-~~~~~l~~ 485 (954)
++++........++|||||++|+|.++.. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666677778899999999999999876 12366774
No 405
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.40 E-value=0.27 Score=55.20 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=40.4
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeec--ccCCCccccccccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
..+....|.| |+..+... .|...+..+|+++++.+.. .-... +.+.+.+|.|+...+|++
T Consensus 101 nAifDl~wap-ge~~lVsa--------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSA--------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEc--------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceee
Confidence 3688899999 77665543 2456677778777766544 22222 226688999999888877
No 406
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.39 E-value=1.7 Score=53.01 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+....|--|+..|.+.. +..+|.++|+++....-+....++ +....||||++++++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~---------~~G~iilvd~et~~~eivg~vd~G-----I~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT---------ALGDIILVDPETLELEIVGNVDNG-----ISAASWSPDEELLALI 127 (1265)
T ss_pred ceEEEEEecccceEEEEe---------cCCcEEEEcccccceeeeeeccCc-----eEEEeecCCCcEEEEE
Confidence 566777888888888865 366788888888766655544443 7789999999999987
No 407
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.32 E-value=0.7 Score=49.99 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=88.8
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
+.+..+.|+|-.-.-+|++. +++.|.+.|+++...+.+...... +....++.|+.+..
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssS------------yDGtiR~~D~~~~i~e~v~s~~~d----------~~~fs~~d~~~e~~ 292 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSS------------YDGTIRLQDFEGNISEEVLSLDTD----------NIWFSSLDFSAESR 292 (498)
T ss_pred ccccceEecCCChhheeeec------------cCceeeeeeecchhhHHHhhcCcc----------ceeeeeccccCCCc
Confidence 77889999996654444331 345888999988766555543211 12234566777777
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.+++. +..+..-++|. -.++.+...+.-++..+.++++.|--.+++..+.-+. ...||.+.-=.+
T Consensus 293 ~vl~~-------------~~~G~f~~iD~-R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~-T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 293 SVLFG-------------DNVGNFNVIDL-RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ-TAKIWDLRQLRG 357 (498)
T ss_pred cEEEe-------------ecccceEEEEe-ecCCccchhhhhhhcccceeecCCCCchheeecccCc-ceeeeehhhhcC
Confidence 66665 33444445554 1244445555556668899999998777655544332 155776553333
Q ss_pred CCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
..+|.+-+-.+...+.+ ..|||+|-.|+...
T Consensus 358 K~sp~lst~~HrrsV~s------AyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNS------AYFSPSGGTLLTTC 388 (498)
T ss_pred CCCcceecccccceeee------eEEcCCCCceEeec
Confidence 22232222222222323 67999998877765
No 408
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.28 E-value=0.44 Score=49.22 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=67.9
Q ss_pred eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002194 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (954)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 404 (954)
+.|..- ..+++++|.||.+.|+.+.+.. ..|+.++.+|+..+.+.-... .....+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~------------~~i~els~~G~vlr~i~l~g~------------~D~EgI 70 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEP------------GEIYELSLDGKVLRRIPLDGF------------GDYEGI 70 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTT------------TEEEEEETT--EEEEEE-SS-------------SSEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCC------------CEEEEEcCCCCEEEEEeCCCC------------CCceeE
Confidence 344433 4578899999999988888553 278888888777666654221 123456
Q ss_pred eeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-----eEEe-----ecccccCceeeccCCceEEEEE
Q 002194 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----EILH-----KLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-----~~l~-----~~~~~~~~~~~spDg~~l~~~~ 474 (954)
++.-+|+. +..+ ...+.++++.++ ..+... +.+. .......+++|.|.+..|+.+.
T Consensus 71 ~y~g~~~~--vl~~-----------Er~~~L~~~~~~-~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 71 TYLGNGRY--VLSE-----------ERDQRLYIFTID-DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EE-STTEE--EEEE-----------TTTTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred EEECCCEE--EEEE-----------cCCCcEEEEEEe-ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 77666642 2211 124467776651 122211 1121 1223467899999999988876
Q ss_pred eccccceEEEEEcC
Q 002194 475 WYKTRRTRTWVISP 488 (954)
Q Consensus 475 ~~~~~~~~l~~~d~ 488 (954)
+++. ..||.++.
T Consensus 137 E~~P--~~l~~~~~ 148 (248)
T PF06977_consen 137 ERKP--KRLYEVNG 148 (248)
T ss_dssp ESSS--EEEEEEES
T ss_pred CCCC--hhhEEEcc
Confidence 6554 67888886
No 409
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.76 Score=51.46 Aligned_cols=147 Identities=12% Similarity=0.015 Sum_probs=90.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.....+++|||+.++.... +.+...++++|..+++.......... ....+.+|||+.++.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~------- 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTN------- 178 (381)
T ss_pred CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEe-------
Confidence 5677899999999887653 11578999999888776555332221 24788999999888761
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeE------cCCCccccccccCCC
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKE------IGPPAVYTSLDPSPD 342 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~------l~~~~~~~~~~~SpD 342 (954)
. ....|..++..+ ...+ +..........++||
T Consensus 179 ---------------~--------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 179 ---------------S--------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred ---------------c--------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 0 234566777633 3332 222234456789999
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
|+++...-.... ...+...|...+.......... .. ....+..+|+|+.++..
T Consensus 218 g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~~~~~~----------~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 218 GNRVYVANDGSG----------SNNVLKIDTATGNVTATDLPVG----------SG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred CCEEEEEeccCC----------CceEEEEeCCCceEEEeccccc----------cC-CCCceeECCCCCEEEEE
Confidence 998877664321 2367777777655443311100 00 23467899999965554
No 410
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.49 Score=52.97 Aligned_cols=207 Identities=11% Similarity=-0.016 Sum_probs=122.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
.......+++|+.++-... ....+.++|.++.....-...+.. ...++++|||+.++++-...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~--------~~~~v~vid~~~~~~~~~~~vG~~-----P~~~~~~~~~~~vYV~n~~~---- 137 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTG--------DSNTVSVIDTATNTVLGSIPVGLG-----PVGLAVDPDGKYVYVANAGN---- 137 (381)
T ss_pred cccceeeCCCCCeEEEecC--------CCCeEEEEcCcccceeeEeeeccC-----CceEEECCCCCEEEEEeccc----
Confidence 3455678889987665432 256788888665444332222221 44789999999999871100
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCceeEc-CCCccccccccCCCCcEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPPAVYTSLDPSPDEKYIL 347 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l-~~~~~~~~~~~SpDGk~l~ 347 (954)
+...++.+|. ++..... ..+......+++|||+.++
T Consensus 138 ------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 138 ------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred ------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEE
Confidence 1245777777 5543333 2222337889999999888
Q ss_pred EEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 348 ~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
..... .+.+.+.+.++....+ ...... .....+...+.++|||++++.....
T Consensus 176 v~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~~yV~~~~-------- 227 (381)
T COG3391 176 VTNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNRVYVANDG-------- 227 (381)
T ss_pred EEecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCEEEEEecc--------
Confidence 77622 2378888877665544 221100 0111344678999999976665211
Q ss_pred cccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
+....+..++. ..+..... .........+..+|+|+.++...... ..+..+|..+.
T Consensus 228 --~~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~---~~V~vid~~~~ 285 (381)
T COG3391 228 --SGSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG---GTVSVIDGATD 285 (381)
T ss_pred --CCCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecCC---CeEEEEeCCCC
Confidence 11346777774 33333332 11111456689999999888775442 45888887764
No 411
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.74 Score=53.89 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=68.3
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i 413 (954)
.+-.++||.|+++|..-.+ ++|.+|.--+..- ....+..+..+...+..++||+||..|
T Consensus 208 ~t~~~~spn~~~~Aa~d~d-------------GrI~vw~d~~~~~--------~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD-------------GRILVWRDFGSSD--------DSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred ceeEEeccccceEEEeccC-------------CcEEEEecccccc--------ccccceEEEecccccceeEEecCCceE
Confidence 4568899999999887643 3788886544110 111111222344556789999999865
Q ss_pred eEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEec
Q 002194 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (954)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~ 476 (954)
+-- +....+.+|.+ ++++.+-|..-...+..+.||||+......-.+
T Consensus 267 lSG-------------G~E~VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 267 LSG-------------GREGVLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred eec-------------ccceEEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 432 23446778885 555655666667778899999999876555443
No 412
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.12 E-value=0.016 Score=62.92 Aligned_cols=109 Identities=9% Similarity=-0.096 Sum_probs=57.8
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHH---CCcEEEEcCCCCCCCCCCccc--chhhHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAE 744 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~ 744 (954)
.|++|++||..... ....+.......+.. ..+.|+..|. ........ ........-..+.
T Consensus 71 ~pt~iiiHGw~~~~------------~~~~~~~~~~~all~~~~~d~NVI~VDW---s~~a~~~Y~~a~~n~~~vg~~la 135 (331)
T PF00151_consen 71 KPTVIIIHGWTGSG------------SSESWIQDMIKALLQKDTGDYNVIVVDW---SRGASNNYPQAVANTRLVGRQLA 135 (331)
T ss_dssp SEEEEEE--TT-TT-------------TTTHHHHHHHHHHCC--S-EEEEEEE----HHHHSS-HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCcCCcc------------cchhHHHHHHHHHHhhccCCceEEEEcc---hhhccccccchhhhHHHHHHHHH
Confidence 69999999953111 011122223333433 4788888444 11000000 0011122234445
Q ss_pred HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--cccEEEEeccC
Q 002194 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (954)
Q Consensus 745 ~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (954)
..+..|.+...+++++|.|+|||+||.+|..+.-.... ++..+....|+
T Consensus 136 ~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 136 KFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 55667775556889999999999999999998887655 68888888775
No 413
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.44 Score=52.93 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=66.3
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC-C
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD-K 410 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD-g 410 (954)
..++.+.|+-||-.+++.... +.+++||+....+-.+..+. ...|+ ..+.|-+. +
T Consensus 229 ~svTal~F~d~gL~~aVGts~-------------G~v~iyDLRa~~pl~~kdh~--~e~pi---------~~l~~~~~~~ 284 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTST-------------GSVLIYDLRASKPLLVKDHG--YELPI---------KKLDWQDTDQ 284 (703)
T ss_pred CcceEEEecCCceeEEeeccC-------------CcEEEEEcccCCceeecccC--Cccce---------eeecccccCC
Confidence 347788999999998887633 38999999987665555432 22333 34566443 2
Q ss_pred CCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCC
Q 002194 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (954)
+..++.. ....+-+|+- .+|.....+ ....++..+.+-|++..++++ ++.. ....|.++.=+
T Consensus 285 q~~v~S~-------------Dk~~~kiWd~--~~Gk~~asi-Ept~~lND~C~~p~sGm~f~A-ne~~-~m~~yyiP~LG 346 (703)
T KOG2321|consen 285 QNKVVSM-------------DKRILKIWDE--CTGKPMASI-EPTSDLNDFCFVPGSGMFFTA-NESS-KMHTYYIPSLG 346 (703)
T ss_pred CceEEec-------------chHHhhhccc--ccCCceeec-cccCCcCceeeecCCceEEEe-cCCC-cceeEEccccC
Confidence 2233331 1224566763 344333333 334447778888887755544 4443 24455554433
No 414
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.08 E-value=0.46 Score=49.06 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=37.9
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~ 260 (954)
.++..+|.||.++|+.+.+ +...|+.++.+|.-.+++.-.+... .+.+++..+|++++.
T Consensus 23 e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRYVLS 81 (248)
T ss_dssp -EEEEEEETTTTEEEEEET--------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEEEEE
T ss_pred CccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEEEEE
Confidence 4888999999998877653 4678999998765555543222222 568888888865553
No 415
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.22 Score=53.89 Aligned_cols=142 Identities=12% Similarity=0.008 Sum_probs=76.6
Q ss_pred ceEEEEEe-CCceeEcCC-C-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccC
Q 002194 314 TQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~-~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~ 390 (954)
.+||.+.+ +|..-.+-. . ..++-..||-||++|+..+.+. .+.+|.+.. .+...+.....
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~----lv~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTD----LVSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEe----ecccccCCCcc
Confidence 45888888 886544433 3 6678889999999998887543 777887541 01110000111
Q ss_pred Cc-cccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCce
Q 002194 391 PI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 391 p~-~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
|. .|+.+--.+.++.-.+-|..-.. +.++.+..+.+|++ ..+..-.-...+..+..++.+|-++.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl-----------~TaS~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARL-----------YTASEDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceE-----------EEecCCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 11 11222122233333332211111 22345567788886 44432211334566788899999987
Q ss_pred EEEEEeccccceEEEEEcCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGS 490 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (954)
++....+ +.+|+.++.+
T Consensus 232 ~yiGt~~----G~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTEE----GKIFQNLLFK 248 (476)
T ss_pred EEecCCc----ceEEeeehhc
Confidence 7766433 3466666543
No 416
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.03 E-value=0.69 Score=49.08 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=79.0
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCC------CceEEeecccccCceeeccCCce
Q 002194 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE------GPEILHKLDLRYGGISWCDDSLA 469 (954)
Q Consensus 396 ~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------~~~~l~~~~~~~~~~~~spDg~~ 469 (954)
++.+.+-.+.|.|-....+.. + +....|.+|.+ |.++- ....|+.+...+..++|.|--.-
T Consensus 79 GHt~~vLDi~w~PfnD~vIAS-----g-------SeD~~v~vW~I-Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIAS-----G-------SEDTKVMVWQI-PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred CccccccccccCccCCceeec-----C-------CCCceEEEEEC-CCcccccCcccceEEEeecceeEEEEeecccchh
Confidence 444556678999866543332 1 33446666665 44332 23456778888999999998777
Q ss_pred EEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEEeeccCCCcEEEEecCCCCCCC
Q 002194 470 LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEG 549 (954)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (954)
++.++..++ .+.+++..+| + ..++-.+...+++ ++|+.||..++-...+
T Consensus 146 VLlsag~Dn---~v~iWnv~tg--e-ali~l~hpd~i~S------~sfn~dGs~l~TtckD------------------- 194 (472)
T KOG0303|consen 146 VLLSAGSDN---TVSIWNVGTG--E-ALITLDHPDMVYS------MSFNRDGSLLCTTCKD------------------- 194 (472)
T ss_pred hHhhccCCc---eEEEEeccCC--c-eeeecCCCCeEEE------EEeccCCceeeeeccc-------------------
Confidence 766655543 3555666665 2 2222225555666 8899999999887632
Q ss_pred CCCeEEEEECCCCCeE
Q 002194 550 NIPFLDLFDINTGSKE 565 (954)
Q Consensus 550 ~~~~l~~~d~~~g~~~ 565 (954)
..|.+||..+|+..
T Consensus 195 --KkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 195 --KKVRVIDPRRGTVV 208 (472)
T ss_pred --ceeEEEcCCCCcEe
Confidence 34889999888754
No 417
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=95.99 E-value=0.01 Score=64.52 Aligned_cols=125 Identities=26% Similarity=0.298 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCC-cEEEEcCCC-CCCCC---
Q 002194 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTT-PIIGE--- 726 (954)
Q Consensus 652 l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~-~~~G~--- 726 (954)
+...++.|. .++.+ .-++|++|||.|-++.++-.+.++ ..|++.+ -+|+..+|+ |..|+
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccceEEec
Confidence 566677784 23333 449999999988777665555432 2455544 444445554 22332
Q ss_pred -CCcccchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCcccEEEEeccCCC
Q 002194 727 -GDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAH--APHLFCCGIARSGAYN 795 (954)
Q Consensus 727 -G~~~~~~~~~~~~~~D~~~av~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~~~~~ 795 (954)
|..+++. .-.+-|..-|+.|++++ -.-||++|.+.|.|+|+.-+.+=+.. ....|+-+|+.+|..+
T Consensus 185 ~~~~eaPG---NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAPG---NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCCC---ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 3333333 34567888999999987 23699999999999998755432221 1146888888887654
No 418
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.92 E-value=0.48 Score=54.53 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=67.1
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspD 409 (954)
..++++.|||---...++..+ .+.+.+||+.--. .++++.+. +-+.-+.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~~AH~-------------GpV~c~nwhPn 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKLTAHN-------------GPVLCLNWHPN 231 (839)
T ss_pred hhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHhhccc-------------CceEEEeecCC
Confidence 788999999944333333322 2389999997321 23344332 33455889998
Q ss_pred CCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE--eecccccCceeeccCCceE-EEEEeccccceEEEEE
Q 002194 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLAL-VYESWYKTRRTRTWVI 486 (954)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l--~~~~~~~~~~~~spDg~~l-~~~~~~~~~~~~l~~~ 486 (954)
+..|+-- +....+-+|+. ++.....+ ......+..+.|-|+-++. +..+.-.. ..|+++
T Consensus 232 r~~lATG-------------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d--tsV~VW 293 (839)
T KOG0269|consen 232 REWLATG-------------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD--TSVHVW 293 (839)
T ss_pred Cceeeec-------------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchhhhhhcccc--ceEEEE
Confidence 8755443 22346778885 44444333 3445567889999997764 44443333 345555
Q ss_pred cCCC
Q 002194 487 SPGS 490 (954)
Q Consensus 487 d~~~ 490 (954)
|+.-
T Consensus 294 DvrR 297 (839)
T KOG0269|consen 294 DVRR 297 (839)
T ss_pred eecc
Confidence 5443
No 419
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=95.89 E-value=0.043 Score=55.43 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=39.2
Q ss_pred HHHHHHHHCCcE---EEEcCCCCCCCCCCcccchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHH
Q 002194 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEANDRF---VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (954)
Q Consensus 703 ~~~~~la~~G~~---V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 776 (954)
.....|+++||. |+..++ |.+........ .......+.+.|+.+++. ... +|-|+||||||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 457789999999 677444 22111111111 112235666666666654 334 89999999999999888
Q ss_pred HHh
Q 002194 777 LAH 779 (954)
Q Consensus 777 a~~ 779 (954)
+..
T Consensus 93 i~~ 95 (219)
T PF01674_consen 93 IKG 95 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 420
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=95.88 E-value=1.4 Score=49.39 Aligned_cols=240 Identities=17% Similarity=0.181 Sum_probs=123.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
+....+++++..++....+ ..+.+|+... + ......+..... ..
T Consensus 68 i~~~~~~~~~~~~~~~~~d---------------------------------~~~~~~~~~~-~-~~~~~~~~~~~~-~~ 111 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSD---------------------------------GTIKLWDLDN-G-EKLIKSLEGLHD-SS 111 (466)
T ss_pred EEEEEECCCCcEEEEecCC---------------------------------CcEEEEEcCC-C-ceeEEEEeccCC-Cc
Confidence 4456778888777766543 3677888743 1 002222322111 13
Q ss_pred ccceee-cCCCCeEEEEEeeccccCCCCceEEEEEECCC--CceeecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 191 LNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 191 ~~~~~w-SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
+....+ ++++..++... ......+.+++..+ .....+...... +..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~---- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLAS-------SSLDGTVKLWDLSTPGKLIRTLEGHSES-----VTSLAFSPDGKLLASGSS---- 175 (466)
T ss_pred eeeEEEECCCcceEEecc-------CCCCccEEEEEecCCCeEEEEEecCccc-----EEEEEECCCCCEEEecCC----
Confidence 444555 88888444332 11133566666665 333333333332 567999999995554300
Q ss_pred CCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCCCCc
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEK 344 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~SpDGk 344 (954)
....+..+++ .+. ...+... ..+..++|+|+|+
T Consensus 176 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 176 --------------------------------------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred --------------------------------------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 0123445555 333 2333333 6778889999999
Q ss_pred EEEEEeecCCcccccccCCCCcceEEEeccCceEEE--eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002194 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (954)
Q Consensus 345 ~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~--l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~ 422 (954)
.++..... ...+.+||...+.... +..+. ... ...|+|++..++..
T Consensus 212 ~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~------ 259 (466)
T COG2319 212 LLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHS-------------DSV-VSSFSPDGSLLASG------ 259 (466)
T ss_pred eEEEEecC------------CCcEEEEECCCCcEEeeecCCCC-------------cce-eEeECCCCCEEEEe------
Confidence 44444111 2366688766333222 11111 111 11699999433322
Q ss_pred CCccccccCCCeEEEEecCCCCCCC-ceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCC
Q 002194 423 GDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~g~~-~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
.....+.+++. ..... ...+..+...+..+.|+|++..++....+ + ...+| +..+.
T Consensus 260 -------~~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~-~~~~~--~~~~~ 316 (466)
T COG2319 260 -------SSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G-TVRLW--DLETG 316 (466)
T ss_pred -------cCCCcEEEeee--cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C-cEEEE--EcCCC
Confidence 33446777775 11222 22222334556677999998888884444 3 25677 55543
No 421
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=95.87 E-value=0.099 Score=52.32 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-----CcccEEEEeccCCCCCCCC-------CCCccc-
Q 002194 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTP-------FGFQNE- 806 (954)
Q Consensus 740 ~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~~~~~~~-------~~~~~~- 806 (954)
..=+..++.+|.++..++ ++-++||||||.....++..+. ..+.-.|++++.++..... .....+
T Consensus 119 s~wlk~~msyL~~~Y~i~--k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~~ 196 (288)
T COG4814 119 SKWLKKAMSYLQKHYNIP--KFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHHHHhcCCc--eeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCcc
Confidence 344568889999997764 8999999999999998887652 1367777777777621111 001000
Q ss_pred -cchhhhcHHHHHhcCcccccCCC--CCCEEEEEeCC------CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCC
Q 002194 807 -DRTLWEATSTYVEMSPFMSANKL--KKPILLVHGEE------DNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (954)
Q Consensus 807 -~~~~~~~~~~~~~~sp~~~~~~~--~~P~Lii~G~~------D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 875 (954)
..+.+ ..|... +..++ .+-+|+|.|+. |..|| ...+...+..+...++.++..+|+| +.|
T Consensus 197 ~~~t~y---~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~H 267 (288)
T COG4814 197 LIKTPY---YDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARH 267 (288)
T ss_pred ccCcHH---HHHHHh----cceeCCCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchh
Confidence 00000 111110 11111 35699999975 45677 7778888888888888777778886 467
Q ss_pred cCCCcccHHHHHHHHHHHHHH
Q 002194 876 GYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~ 896 (954)
.-. .++ ..+...+..||-+
T Consensus 268 s~l-hen-~~v~~yv~~FLw~ 286 (288)
T COG4814 268 SKL-HEN-PTVAKYVKNFLWE 286 (288)
T ss_pred hcc-CCC-hhHHHHHHHHhhc
Confidence 643 232 4556667777643
No 422
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.85 E-value=0.017 Score=50.94 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=47.9
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..|+||+.++.|..+| +..++++.++|... +++..++.||+... ....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~s----~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPGS----RLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCCc----eEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 4899999999999998 99999999988654 89999999999753 3334566666666654
No 423
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.84 E-value=1.7 Score=44.60 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=30.9
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEecc
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~ 383 (954)
-..+.++||||+..||++... +.|.++|+.|.+...|..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~-------------G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAEST-------------GTIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCC-------------CeEEEEecccceeEEcCc
Confidence 456778999999999998743 389999999877665543
No 424
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=95.80 E-value=0.37 Score=50.11 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=109.1
Q ss_pred EEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCC
Q 002194 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (954)
Q Consensus 644 ~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (954)
+++.-| .|+.+++-... +..|++|-.|--..... ..|..+-.........+.|.|+.. +.
T Consensus 4 v~t~~G-~v~V~v~G~~~------~~kp~ilT~HDvGlNh~----------scF~~ff~~~~m~~i~~~f~i~Hi---~a 63 (283)
T PF03096_consen 4 VETPYG-SVHVTVQGDPK------GNKPAILTYHDVGLNHK----------SCFQGFFNFEDMQEILQNFCIYHI---DA 63 (283)
T ss_dssp EEETTE-EEEEEEESS--------TTS-EEEEE--TT--HH----------HHCHHHHCSHHHHHHHTTSEEEEE---E-
T ss_pred eccCce-EEEEEEEecCC------CCCceEEEeccccccch----------HHHHHHhcchhHHHHhhceEEEEE---eC
Confidence 444454 57777774321 13799999986211000 001111111222334577888873 33
Q ss_pred CCC--CCcccchhhH----HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCC
Q 002194 724 IGE--GDEEANDRFV----EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (954)
Q Consensus 724 ~G~--G~~~~~~~~~----~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~ 797 (954)
.|+ |....+..+. .++.+++..+++++ .+ +.+..+|--+|+++-+..|..+|+++-++|++++.....
T Consensus 64 PGqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f----~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~ 137 (283)
T PF03096_consen 64 PGQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF----GL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAA 137 (283)
T ss_dssp TTTSTT-----TT-----HHHHHCTHHHHHHHH----T-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S--
T ss_pred CCCCCCcccccccccccCHHHHHHHHHHHHHhC----Cc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCc
Confidence 343 3333333332 23444444554444 33 469999999999999999999999999999998754311
Q ss_pred --------------CCCCCCccc--cchhh---------hc----------------H-------HHHHhc-CcccccCC
Q 002194 798 --------------LTPFGFQNE--DRTLW---------EA----------------T-------STYVEM-SPFMSANK 828 (954)
Q Consensus 798 --------------~~~~~~~~~--~~~~~---------~~----------------~-------~~~~~~-sp~~~~~~ 828 (954)
....+.... ....| .+ + +.|... +.......
T Consensus 138 gw~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~ 217 (283)
T PF03096_consen 138 GWMEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPS 217 (283)
T ss_dssp -HHHHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTT
T ss_pred cHHHHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCC
Confidence 000011100 00000 00 0 111111 11123345
Q ss_pred CCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 829 LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 829 ~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
..+|+|++.|+.-+. .+.+.++..+|.. ...+++..+++|=... .+.+..+.+.+.=|++.
T Consensus 218 ~~c~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 218 LGCPVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp CCS-EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHcc
Confidence 569999999998865 6788899998854 3588888998766542 45555566666555543
No 425
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.68 E-value=0.81 Score=46.92 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=34.4
Q ss_pred eEeceEEEEccCCCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECC
Q 002194 161 FYTGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD 227 (954)
Q Consensus 161 ~~~~l~l~~~~~~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~ 227 (954)
.+....||.++. +.. .+.++++ +.++.+.|+|.|..++..+ +++..+||.+.++
T Consensus 168 ADhTA~iWs~Es----g~CL~~Y~GH~--GSVNsikfh~s~~L~lTaS-------GD~taHIW~~av~ 222 (481)
T KOG0300|consen 168 ADHTARIWSLES----GACLATYTGHT--GSVNSIKFHNSGLLLLTAS-------GDETAHIWKAAVN 222 (481)
T ss_pred cccceeEEeecc----ccceeeecccc--cceeeEEeccccceEEEcc-------CCcchHHHHHhhc
Confidence 335667888854 321 1223322 4789999999887666644 6778899975543
No 426
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.03 Score=63.39 Aligned_cols=81 Identities=12% Similarity=0.141 Sum_probs=48.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+.|.+||+.. + ...+.|+++. ..+..+.|+|=|.+.|- +.-..++-++|..-..+........
T Consensus 92 gtiK~wDlee-A--k~vrtLtgh~--~~~~sv~f~P~~~~~a~---------gStdtd~~iwD~Rk~Gc~~~~~s~~--- 154 (825)
T KOG0267|consen 92 GTIKVWDLEE-A--KIVRTLTGHL--LNITSVDFHPYGEFFAS---------GSTDTDLKIWDIRKKGCSHTYKSHT--- 154 (825)
T ss_pred Cceeeeehhh-h--hhhhhhhccc--cCcceeeeccceEEecc---------ccccccceehhhhccCceeeecCCc---
Confidence 5899999953 1 2344455433 36777889998876532 3335566666655333333322221
Q ss_pred cccccceeEecCCeEEEEE
Q 002194 243 NAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (954)
.++..+.++|||++++..
T Consensus 155 -~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 155 -RVVDVLRLSPDGRWVASG 172 (825)
T ss_pred -ceeEEEeecCCCceeecc
Confidence 126688999999998854
No 427
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=95.58 E-value=0.49 Score=49.02 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=55.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccc
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (954)
+-|+|.++.. ++ -...+.+ +|..++...+.|+.-+|+.+.. ....|.++++.++....+..+-+ +.
T Consensus 115 GvIrVid~~~-~~--~~~~~~g--hG~sINeik~~p~~~qlvls~S--------kD~svRlwnI~~~~Cv~VfGG~e-gH 180 (385)
T KOG1034|consen 115 GVIRVIDVVS-GQ--CSKNYRG--HGGSINEIKFHPDRPQLVLSAS--------KDHSVRLWNIQTDVCVAVFGGVE-GH 180 (385)
T ss_pred eEEEEEecch-hh--hccceec--cCccchhhhcCCCCCcEEEEec--------CCceEEEEeccCCeEEEEecccc-cc
Confidence 4688888743 21 1223322 4568999999998877776543 35567777888887776654332 22
Q ss_pred cccccceeEecCCeEEEEE
Q 002194 243 NAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 243 ~~~~~~~~wspDG~~l~~~ 261 (954)
...+-++.|++||.+|+..
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 3335689999999988855
No 428
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.52 E-value=0.66 Score=52.39 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=59.0
Q ss_pred CcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCC
Q 002194 365 PRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV 443 (954)
Q Consensus 365 ~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (954)
.+.+.+||..+. +...|..+ ...++.+..++||.+++-. +..+.|.+|++
T Consensus 192 ek~lr~wDprt~~kimkLrGH-------------TdNVr~ll~~dDGt~~ls~-------------sSDgtIrlWdL--- 242 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGH-------------TDNVRVLLVNDDGTRLLSA-------------SSDGTIRLWDL--- 242 (735)
T ss_pred ccceEEeccccccceeeeecc-------------ccceEEEEEcCCCCeEeec-------------CCCceEEeeec---
Confidence 348999998854 44444433 2466788899999987765 45668889986
Q ss_pred CCCCceEE---eecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEe
Q 002194 444 QGEGPEIL---HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF 499 (954)
Q Consensus 444 ~g~~~~~l---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 499 (954)
| +.+-+ ..+...+..+.-+|+=+.+++. .++ ..|++.|+... .+.+.+.
T Consensus 243 -g-qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG-~rd---~~i~~Tdl~n~-~~~tlic 294 (735)
T KOG0308|consen 243 -G-QQRCLATYIVHKEGVWALQSSPSFTHVYSG-GRD---GNIYRTDLRNP-AKSTLIC 294 (735)
T ss_pred -c-ccceeeeEEeccCceEEEeeCCCcceEEec-CCC---CcEEecccCCc-hhheEee
Confidence 2 22222 2233334444445555555554 332 45888888775 2334443
No 429
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=95.51 E-value=0.013 Score=64.60 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=66.5
Q ss_pred ccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 002194 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (954)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~ 748 (954)
.-+|+++|||.|... +... ...+.+.|+ +.|.-|+..+| +.+++..++...+++.-|.-
T Consensus 396 ~sli~HcHGGGfVAq--------sSkS----HE~YLr~Wa~aL~cPiiSVdY--------SLAPEaPFPRaleEv~fAYc 455 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQ--------SSKS----HEPYLRSWAQALGCPIISVDY--------SLAPEAPFPRALEEVFFAYC 455 (880)
T ss_pred ceEEEEecCCceeee--------cccc----ccHHHHHHHHHhCCCeEEeee--------ccCCCCCCCcHHHHHHHHHH
Confidence 358999999965432 1111 124555666 47999998777 67777788889999999999
Q ss_pred HHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 749 EVVRRG---VAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 749 ~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
|++++. ....+||.+.|.|+||++...++.+
T Consensus 456 W~inn~allG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 456 WAINNCALLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HHhcCHHHhCcccceEEEeccCCCcceeehhHHH
Confidence 999872 2346899999999999987766653
No 430
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.062 Score=57.42 Aligned_cols=174 Identities=15% Similarity=0.104 Sum_probs=96.6
Q ss_pred CCCCcccHHHHHHHHCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 002194 696 EFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (954)
Q Consensus 696 ~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 775 (954)
+|..........|.++|+-|+- .++.-| +......+....|+.+.+++...+- ...++.++|+|+|+-+--.
T Consensus 271 GWr~lDk~v~~~l~~~gvpVvG---vdsLRY---fW~~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~ 342 (456)
T COG3946 271 GWRDLDKEVAEALQKQGVPVVG---VDSLRY---FWSERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPF 342 (456)
T ss_pred chhhhhHHHHHHHHHCCCceee---eehhhh---hhccCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHH
Confidence 3555556677889999999998 333322 1222334677889999998887763 3469999999999987766
Q ss_pred HHHhCCCcccEEEEeccCCCCCC-CCCCCccccchhhhcHHHHHhcCcccccCCCCC-CEEEEEeC--CCCCCCCchHHH
Q 002194 776 LLAHAPHLFCCGIARSGAYNRTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLKK-PILLVHGE--EDNNSGTLTMQS 851 (954)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~-P~Lii~G~--~D~~v~~~~~~~ 851 (954)
+-.+-|...+..|....+..... ..+.+.-+...-+... ....+...+.++.. .+..|.|. +|..|| -
T Consensus 343 ~~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~---g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp--~--- 414 (456)
T COG3946 343 AYNRLPPATRQRVRMVSLLGLGRTADFEISVEGWLGMAGE---GAGDVVPDIAKLPLARVQCIYGQEEKDTACP--S--- 414 (456)
T ss_pred HHHhCCHHHHHHHHHHHHHhccccceEEEEEeeeeccCCc---CCCCcchhhhhCCcceeEEEecCccccccCC--c---
Confidence 66665543332222222211110 0111110000000000 01233444555543 67888885 455665 2
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHH
Q 002194 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (954)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (954)
|+..| ++.+.+|| ||.| .++...+.+.|++=++.
T Consensus 415 ------l~~~~--~~~v~lpG-gHHF--d~dy~~la~~il~~~~~ 448 (456)
T COG3946 415 ------LKAKG--VDTVKLPG-GHHF--DGDYEKLAKAILQGMRL 448 (456)
T ss_pred ------chhhc--ceeEecCC-Cccc--CccHHHHHHHHHHHHHh
Confidence 23333 46677898 6666 45556666777766533
No 431
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=1.9 Score=44.56 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=68.4
Q ss_pred ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 332 ~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+++.+|+||.+.|..+.+..+ .+.-.+.+|.-++.+.-.... ....+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~------------~iVElt~~GdlirtiPL~g~~------------DpE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPA------------AIVELTKEGDLIRTIPLTGFS------------DPETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCCCc------------eEEEEecCCceEEEecccccC------------ChhHeEEecCCE
Confidence 55889999999999988875532 444445567666665542211 123456666665
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCC----C-ceEEee--c-ccccCceeeccCCceEEEEEeccccceEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE----G-PEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~-~~~l~~--~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l 483 (954)
..+ ++. ....++++.+++.+.- . ...|.. . .....+++|+|+.+.++++.+++. ..|
T Consensus 142 fvi--~dE-----------R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P--~~I 206 (316)
T COG3204 142 FVI--VDE-----------RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP--IGI 206 (316)
T ss_pred EEE--Eeh-----------hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC--cEE
Confidence 221 111 1335555554211110 0 111211 1 234568999999999999987765 778
Q ss_pred EEEcCC
Q 002194 484 WVISPG 489 (954)
Q Consensus 484 ~~~d~~ 489 (954)
|.++..
T Consensus 207 ~~~~~~ 212 (316)
T COG3204 207 FEVTQS 212 (316)
T ss_pred EEEecC
Confidence 888743
No 432
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.36 E-value=0.62 Score=50.54 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=42.8
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.+...+=+|+|.+|+-. ....+||+|.+.+|..-.+...... .+.-+.|+.||..|+..
T Consensus 83 ~v~al~s~n~G~~l~ag---------~i~g~lYlWelssG~LL~v~~aHYQ----~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAG---------TISGNLYLWELSSGILLNVLSAHYQ----SITCLKFSDDGSHIITG 141 (476)
T ss_pred ceeeeecCCCceEEEee---------cccCcEEEEEeccccHHHHHHhhcc----ceeEEEEeCCCcEEEec
Confidence 56777889999877652 2467999999999987554432222 26678899999998866
No 433
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.30 E-value=0.021 Score=58.13 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC----CcccEEEEeccC
Q 002194 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (954)
Q Consensus 741 ~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (954)
.-...|++|+.+.-.-.+.+|.+.|||.||++|..+++..+ +++..+.+..++
T Consensus 66 ~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 66 PQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 33456677776642223446999999999999999998843 467777777653
No 434
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=95.28 E-value=0.084 Score=60.26 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=83.3
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc----cHHHHHHHHCCcEEE
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG----STSVLLWLARGFAIL 716 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~la~~G~~V~ 716 (954)
.+.+....+..+..|++.-.+ ++. ..|+|||+.|||.++.-.......+|......+ ......|... ..+|
T Consensus 15 yl~~~~~~~~~lfyw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l 89 (415)
T PF00450_consen 15 YLPVNDNENAHLFYWFFESRN-DPE---DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLL 89 (415)
T ss_dssp EEEECTTTTEEEEEEEEE-SS-GGC---SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEE
T ss_pred EEecCCCCCcEEEEEEEEeCC-CCC---CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceE
Confidence 345555567789888885443 333 379999999999877655445555554443110 1222234444 4444
Q ss_pred EcCCCCCCCCCCcccchh---hHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHh----C------CC
Q 002194 717 GGPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVR-RGVAHPSKIAVGGHSYGAFMTANLLAH----A------PH 782 (954)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~av~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~ 782 (954)
..+..-.+|+........ ......+|+..++..... .+.....++.|+|-||||..+-.+|.. . +=
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 433222344433322222 234566777777764444 455556689999999999987666542 2 12
Q ss_pred cccEEEEeccCCC
Q 002194 783 LFCCGIARSGAYN 795 (954)
Q Consensus 783 ~~~a~v~~~~~~~ 795 (954)
.++++++.+|..+
T Consensus 170 nLkGi~IGng~~d 182 (415)
T PF00450_consen 170 NLKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEEESE-SB
T ss_pred ccccceecCcccc
Confidence 3889999988755
No 435
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.27 E-value=0.11 Score=53.64 Aligned_cols=211 Identities=17% Similarity=0.154 Sum_probs=114.8
Q ss_pred eeeEeceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCC
Q 002194 159 MSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (954)
Q Consensus 159 ~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 238 (954)
+..+..|.|||.++ - .-.+.|++++ +.+....+ |.+.|+- ++....|.++|.++|+.....-+.
T Consensus 213 GlrDnTikiWD~n~-~--~c~~~L~GHt--GSVLCLqy--d~rviis---------GSSDsTvrvWDv~tge~l~tlihH 276 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNS-L--ECLKILTGHT--GSVLCLQY--DERVIVS---------GSSDSTVRVWDVNTGEPLNTLIHH 276 (499)
T ss_pred ccccCceEEecccc-H--HHHHhhhcCC--CcEEeeec--cceEEEe---------cCCCceEEEEeccCCchhhHHhhh
Confidence 33346889999853 1 2234565544 34555554 4554433 445678888899999875543333
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
-+. +-.+.++ +|-.+-++ .+ ....+|.
T Consensus 277 cea----VLhlrf~-ng~mvtcS----------------------kD--------------------------rsiaVWd 303 (499)
T KOG0281|consen 277 CEA----VLHLRFS-NGYMVTCS----------------------KD--------------------------RSIAVWD 303 (499)
T ss_pred cce----eEEEEEe-CCEEEEec----------------------CC--------------------------ceeEEEe
Confidence 222 3355565 45333332 00 1123444
Q ss_pred EEe-CC-ceeEc-CCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCcc
Q 002194 319 VSL-DG-TVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIA 393 (954)
Q Consensus 319 ~~~-~G-~~~~l-~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~ 393 (954)
++. +. ..+++ ... ..+..+.|+ .|+|+..+.++ +|.+|+..+.+. +.|..+...
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-------------TikvW~~st~efvRtl~gHkRG------ 362 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-------------TIKVWSTSTCEFVRTLNGHKRG------ 362 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-------------eEEEEeccceeeehhhhccccc------
Confidence 443 21 22222 233 556666664 67888887554 899999997654 444443211
Q ss_pred ccccccCccceeec-cCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEE
Q 002194 394 FNSVRKGMRSINWR-SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (954)
Q Consensus 394 ~~~~~~g~~~~~ws-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~ 472 (954)
++-- -.|+ +++. -+....|.+|++ ..|.-.+.|.+++.-+.-+.| |.++|+.
T Consensus 363 ----------IAClQYr~r-lvVS------------GSSDntIRlwdi--~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 363 ----------IACLQYRDR-LVVS------------GSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ----------ceehhccCe-EEEe------------cCCCceEEEEec--cccHHHHHHhchHHhhhheee--cCceeee
Confidence 1110 0122 1121 134567888886 344455777777777777888 6788887
Q ss_pred EEeccccceEEEEEcC
Q 002194 473 ESWYKTRRTRTWVISP 488 (954)
Q Consensus 473 ~~~~~~~~~~l~~~d~ 488 (954)
.+.++. .++|.+..
T Consensus 416 GaYDGk--ikvWdl~a 429 (499)
T KOG0281|consen 416 GAYDGK--IKVWDLQA 429 (499)
T ss_pred ccccce--EEEEeccc
Confidence 765433 55665543
No 436
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.18 E-value=1.8 Score=44.82 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=33.5
Q ss_pred EEEEEe-CCc-eeEcCCC---ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccC
Q 002194 316 LVLVSL-DGT-VKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (954)
Q Consensus 316 l~~~~~-~G~-~~~l~~~---~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g 375 (954)
|-+.|. +|+ +..+-.+ ..+..++||||+.||+.+|+.+ ++.++.+..
T Consensus 206 IRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlHiF~l~~ 257 (346)
T KOG2111|consen 206 IRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEEEEEeec
Confidence 455676 663 3344333 6778899999999999999654 777777764
No 437
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=3.5 Score=42.31 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=98.4
Q ss_pred CCceEEeecccccCceeeccCC-ceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEE
Q 002194 446 EGPEILHKLDLRYGGISWCDDS-LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYV 524 (954)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l 524 (954)
++..--+....+.-.++++|-- +.++|+.... ..-+++|.++. .+++.+........|+. -.|||||++|
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~-~~pv~~~s~~~RHfyGH-----Gvfs~dG~~L 128 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPG---TFAMVFDPNGA-QEPVTLVSQEGRHFYGH-----GVFSPDGRLL 128 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCC---ceEEEECCCCC-cCcEEEecccCceeecc-----cccCCCCcEE
Confidence 3333333445556778999985 4566664433 45778888886 46777766555555543 3599999999
Q ss_pred EEEEeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEec
Q 002194 525 IAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (954)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s 604 (954)
+.+.++.+ .++..|-+||... ...++-+-... - +.. .+..+.+||+.++....+
T Consensus 129 YATEndfd----------------~~rGViGvYd~r~-~fqrvgE~~t~--G------iGp-Hev~lm~DGrtlvvanGG 182 (366)
T COG3490 129 YATENDFD----------------PNRGVIGVYDARE-GFQRVGEFSTH--G------IGP-HEVTLMADGRTLVVANGG 182 (366)
T ss_pred EeecCCCC----------------CCCceEEEEeccc-ccceecccccC--C------cCc-ceeEEecCCcEEEEeCCc
Confidence 88875432 2345677888763 33333221100 0 000 114577888888876552
Q ss_pred C--------------CCCceEEEEECCCCceeEeecCCCCCCCcCCCceEEEEEEcCCCeEEEEEEEc
Q 002194 605 K--------------TENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYL 658 (954)
Q Consensus 605 ~--------------~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~ 658 (954)
- .+.+.+.+++..+|+..+-..++ +++..+..+.+.+ ..||..+.+.-|.
T Consensus 183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp---~~l~~lSiRHld~-g~dgtvwfgcQy~ 246 (366)
T COG3490 183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP---ASLRQLSIRHLDI-GRDGTVWFGCQYR 246 (366)
T ss_pred eecccccCccccchhhcCccEEEEeccccchhhhccCc---hhhhhcceeeeee-CCCCcEEEEEEee
Confidence 1 12355667776666532211111 1233344555554 4688888887775
No 438
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.15 E-value=0.36 Score=50.81 Aligned_cols=139 Identities=19% Similarity=0.304 Sum_probs=80.3
Q ss_pred EeceEEEEccCCCCC-CceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCC--ceeecccCC
Q 002194 162 YTGIGIHQLFPDGKL-GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSP 238 (954)
Q Consensus 162 ~~~l~l~~~~~~g~~-~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~ 238 (954)
..+|++|...+ |.= -..+++++++ ..+-...|||.-+.++++.. -++...|| |+..+ ++.-.+...
T Consensus 233 ~~~I~lw~~~~-g~W~vd~~Pf~gH~--~SVEDLqWSptE~~vfaScS------~DgsIrIW--DiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 233 VKGIHLWEPST-GSWKVDQRPFTGHT--KSVEDLQWSPTEDGVFASCS------CDGSIRIW--DIRSGPKKAAVSTKAH 301 (440)
T ss_pred ccceEeeeecc-CceeecCccccccc--cchhhhccCCccCceEEeee------cCceEEEE--EecCCCccceeEeecc
Confidence 35789998764 311 1234555433 47889999998888877653 33445555 55444 333333222
Q ss_pred CccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEE
Q 002194 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (954)
Q Consensus 239 ~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~ 318 (954)
.. .+..+.|+.+-.+|++... | |+-.||-
T Consensus 302 ~s----DVNVISWnr~~~lLasG~D----------------------------------------d-------Gt~~iwD 330 (440)
T KOG0302|consen 302 NS----DVNVISWNRREPLLASGGD----------------------------------------D-------GTLSIWD 330 (440)
T ss_pred CC----ceeeEEccCCcceeeecCC----------------------------------------C-------ceEEEEE
Confidence 22 2778889977766665410 0 3333444
Q ss_pred EEe--CCce-eEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc
Q 002194 319 VSL--DGTV-KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (954)
Q Consensus 319 ~~~--~G~~-~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~ 374 (954)
+.. .|.+ ..+... ..++++.|+|....++.++.. +.+|.+||+.
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~------------D~QitiWDls 378 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE------------DNQITIWDLS 378 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC------------CCcEEEEEee
Confidence 433 3422 223333 788999999977666555533 2389999986
No 439
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.12 E-value=0.89 Score=50.65 Aligned_cols=213 Identities=13% Similarity=0.141 Sum_probs=108.0
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce--eecccCCCccccccccceeEecCCeEEEEEecCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~ 267 (954)
..+.+..||||++|+-+ +....+|-++|+..-.. .+-+.... +.....|.|=..+++...+...
T Consensus 53 ast~ik~s~DGqY~lAt--------G~YKP~ikvydlanLSLKFERhlDae~------V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLAT--------GTYKPQIKVYDLANLSLKFERHLDAEV------VDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred ccceeEecCCCcEEEEe--------cccCCceEEEEcccceeeeeecccccc------eeEEEeccchhhheEeecCcee
Confidence 45678899999998875 45678888888765322 22222221 2222334444444444211111
Q ss_pred CCCCCCCCCCCCceeeccCCceeeech--h-hhhccCccccccccccccceEEEEEe-CCc-eeEcCCC-ccccccccCC
Q 002194 268 DPPKKPLVPLGPKMQSNEKRDIIQVRT--F-QDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSP 341 (954)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~r~--~-~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~-~~~l~~~-~~~~~~~~Sp 341 (954)
..- +..+..+..|. + .|+.-+...-..+.......||++++ .|. +..+... +.+..+..++
T Consensus 119 efH-------------ak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 119 EFH-------------AKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred eeh-------------hhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 100 00000000000 0 01111222222333234567999999 774 3333333 5566677787
Q ss_pred CCcEEEEEeecCCcccccccCCCCcceEEEeccCce-EEEe------ccCCCcccCCccccccccCccceeeccCCCCce
Q 002194 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VREL------CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (954)
Q Consensus 342 DGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l------~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~ 414 (954)
-...|++.... +.+..||...+. +..| ..+++.+. ...+.++.|+-||=.++
T Consensus 186 ~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~--------~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 186 EHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAASSVNSHPGGDA--------APSVTALKFRDDGLHVA 244 (703)
T ss_pred ccceEEecccC-------------ceEEEecchhhhhheeeecccccCCCccccc--------cCcceEEEecCCceeEE
Confidence 77677766533 378888877432 2222 22222111 12357789999886655
Q ss_pred EEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec--ccccCceeeccC
Q 002194 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDD 466 (954)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~--~~~~~~~~~spD 466 (954)
+- ...+.++++|+ -..++-.+..+ ...+..+.|-+.
T Consensus 245 VG-------------ts~G~v~iyDL---Ra~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 245 VG-------------TSTGSVLIYDL---RASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred ee-------------ccCCcEEEEEc---ccCCceeecccCCccceeeeccccc
Confidence 54 33568899996 44454444333 334556777654
No 440
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.88 E-value=0.25 Score=54.61 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=84.5
Q ss_pred cCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHH-HCCcEEEEcCCCCCC
Q 002194 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPII 724 (954)
Q Consensus 646 ~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~ 724 (954)
+..+...+=++|.+..+...+ -|+.+|+-|-. .... .|..........|| +.|-.|+... .+
T Consensus 65 ~~~~~~~Qq~~y~n~~~~~~~---gPiFLmIGGEg--------p~~~---~wv~~~~~~~~~~AkkfgA~v~~lE---HR 127 (514)
T KOG2182|consen 65 SSNGKFFQQRFYNNNQWAKPG---GPIFLMIGGEG--------PESD---KWVGNENLTWLQWAKKFGATVFQLE---HR 127 (514)
T ss_pred cchhhhhhhheeeccccccCC---CceEEEEcCCC--------CCCC---CccccCcchHHHHHHHhCCeeEEee---ee
Confidence 334444555667776653222 69999987721 1111 12111112233444 5788888722 23
Q ss_pred CCCCccc-------chhh--HHHHHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCC
Q 002194 725 GEGDEEA-------NDRF--VEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (954)
Q Consensus 725 G~G~~~~-------~~~~--~~~~~~D~~~av~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (954)
=||.+.. +-.+ ..+.+.|+...++.+..+ +.-++.+.+..|.||-|.|++|+=.++|+++.++|+.+++.
T Consensus 128 FYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 128 FYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred ccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 3444321 1122 346789999999998776 45666799999999999999999999999999999887753
No 441
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.14 Score=49.39 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=48.8
Q ss_pred HHHHHHHHCCcEEEEcCCCCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 002194 703 TSVLLWLARGFAILGGPTTPIIGE-GDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (954)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~-G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 781 (954)
.+.....+.||.|+..+....+-. -....+..+....++-+.-+..+++.. ..++.++++-||+||.+++.++-+.|
T Consensus 135 Pyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~ 212 (297)
T KOG3967|consen 135 PYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFP 212 (297)
T ss_pred hHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcC
Confidence 345555678999998444222111 001122333344455555555555543 45678999999999999999999987
Q ss_pred C
Q 002194 782 H 782 (954)
Q Consensus 782 ~ 782 (954)
+
T Consensus 213 ~ 213 (297)
T KOG3967|consen 213 D 213 (297)
T ss_pred C
Confidence 5
No 442
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.81 E-value=0.87 Score=51.54 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=21.7
Q ss_pred eEEEEEe-CCc-eeEcCCCccccccccCCCCcEEEEEeec
Q 002194 315 QLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIH 352 (954)
Q Consensus 315 ~l~~~~~-~G~-~~~l~~~~~~~~~~~SpDGk~l~~~s~~ 352 (954)
.|..+|. +++ ++++.-. .+..+.||+||+++++.+.+
T Consensus 127 ~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC
Confidence 4778888 664 4445432 36788999999999999733
No 443
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.67 E-value=1.1 Score=45.30 Aligned_cols=108 Identities=9% Similarity=0.002 Sum_probs=58.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCCc
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~~ 190 (954)
..+.++|||+++++.+.+. .++..+.+..+++--....++..++ .
T Consensus 161 ~ns~~~snd~~~~~~Vgds---------------------------------~~Vf~y~id~~sey~~~~~~a~t~D--~ 205 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDS---------------------------------RRVFRYAIDDESEYIENIYEAPTSD--H 205 (344)
T ss_pred eeeeEEcCCCceEEEecCC---------------------------------CcceEEEeCCccceeeeeEecccCC--C
Confidence 4456677777777776553 5777888855442222222322222 3
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC--eEEEEE
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS--TLLVCT 261 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG--~~l~~~ 261 (954)
-...+||......|... .++...||-+.-.+--.+..+. .....++.+..+.||+-| .+|+++
T Consensus 206 gF~~S~s~~~~~FAv~~-------Qdg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVF-------QDGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred ceeeeeccCcceEEEEe-------cCCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEe
Confidence 45568998777777655 3345555544322211111211 112245558899999866 466665
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=10 Score=43.10 Aligned_cols=100 Identities=10% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeecCCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~~~~~~ 189 (954)
++++..|=+--++++..+++ .+|.|++.++ + .+.+.... +..
T Consensus 57 PvRa~kfiaRknWiv~GsDD---------------------------------~~IrVfnynt-~--ekV~~FeA--H~D 98 (794)
T KOG0276|consen 57 PVRAAKFIARKNWIVTGSDD---------------------------------MQIRVFNYNT-G--EKVKTFEA--HSD 98 (794)
T ss_pred chhhheeeeccceEEEecCC---------------------------------ceEEEEeccc-c--eeeEEeec--ccc
Confidence 45566666666777777665 5889998854 1 23333332 224
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCC-eEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS-TLLV 259 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG-~~l~ 259 (954)
.+...+-+|.--.++..+ ++-...+|.++-.= ...+...+..-. +-.+++.|.. ..++
T Consensus 99 yIR~iavHPt~P~vLtsS-------DDm~iKlW~we~~w-a~~qtfeGH~Hy----VMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSS-------DDMTIKLWDWENEW-ACEQTFEGHEHY----VMQVAFNPKDPNTFA 157 (794)
T ss_pred ceeeeeecCCCCeEEecC-------CccEEEEeeccCce-eeeeEEcCcceE----EEEEEecCCCcccee
Confidence 788889999887777755 34466677766221 234444433322 5567777654 3444
No 445
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.58 E-value=8.2 Score=42.18 Aligned_cols=148 Identities=15% Similarity=0.113 Sum_probs=76.0
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC--ccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP--IAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p--~~~~~~~~g~~~~~wspDg~ 411 (954)
..++++.+||..++..- ... .......|+.++.+|...+.+.......... ..--..+.|..+++++|||+
T Consensus 87 ~Egi~~~~~g~~~is~E-~~~------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSE-GGR------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred hhHeEEecCCCEEEEeC-Ccc------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCC
Confidence 34566666665544332 210 0011237888888866555552211110000 01112345667899999999
Q ss_pred CceEEEEec---cCCCccccccCCCeEEEEecCCCCCC-CceEE----ee-----cccccCceeeccCCceEEEEEec--
Q 002194 412 STLYWAETQ---DGGDAKVEVTPRDIIYTQQAEPVQGE-GPEIL----HK-----LDLRYGGISWCDDSLALVYESWY-- 476 (954)
Q Consensus 412 ~i~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~l----~~-----~~~~~~~~~~spDg~~l~~~~~~-- 476 (954)
.++...+.. ++.......+..-+|+.++. .+.+ ...+. .. ....+..+.+-+|++.|+.....
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~--~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~ 237 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDP--KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSP 237 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecC--CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCC
Confidence 777665533 22111111111234556653 3322 22222 11 34556778999999988887652
Q ss_pred -cccceEEEEEcCCC
Q 002194 477 -KTRRTRTWVISPGS 490 (954)
Q Consensus 477 -~~~~~~l~~~d~~~ 490 (954)
.+...+||.+++..
T Consensus 238 ~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 238 GTGNYKRIYRVDLSD 252 (326)
T ss_pred CccceEEEEEEEccc
Confidence 22457899999764
No 446
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.57 E-value=6.5 Score=40.51 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.5
Q ss_pred CeEEEEECCCCCeE
Q 002194 552 PFLDLFDINTGSKE 565 (954)
Q Consensus 552 ~~l~~~d~~~g~~~ 565 (954)
.+|+.+|+++|+..
T Consensus 222 ~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 222 GRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 46999999999754
No 447
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=94.55 E-value=0.37 Score=64.02 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=48.9
Q ss_pred HCCcEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CCCcccE
Q 002194 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (954)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (954)
..++.|+. ....|++.............+++.+.++.+. ...++.++|||+||.++..++.+ .++++..
T Consensus 1092 ~~~~~v~~---~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYG---IQSPRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEE---EECCCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 45688887 3445555443333345556666655554431 12479999999999999999885 4677777
Q ss_pred EEEecc
Q 002194 787 GIARSG 792 (954)
Q Consensus 787 ~v~~~~ 792 (954)
++.+.+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 777654
No 448
>PRK13614 lipoprotein LpqB; Provisional
Probab=94.49 E-value=1.3 Score=51.44 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=36.9
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC-Ccee--ecccCCCccccc-cccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR--PLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~-g~~~--~lt~~~~~~~~~-~~~~~~wspDG~~l~~~ 261 (954)
+.....|+|.++| +|....+ +....|..+..++ ++.. .+......++.+ .|..+.-|+||-++++.
T Consensus 382 g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi 451 (573)
T PRK13614 382 GSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVI 451 (573)
T ss_pred CCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEE
Confidence 3457889999999 6665432 1223666655433 1211 000001111222 27789999999999877
No 449
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.46 E-value=0.044 Score=58.57 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEec
Q 002194 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (954)
Q Consensus 736 ~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (954)
.++...|....+..|++.......+|+++|.||||++++|.=.++|+.+.++.+.+
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAAS 199 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhcc
Confidence 35678999999999988765666799999999999999999999999877765544
No 450
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.32 E-value=0.1 Score=54.01 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=40.8
Q ss_pred cEEEEcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCcccEEEE
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIA 789 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~ 789 (954)
.-|+. ....|++.........+...+...+++..++-+ .++.+.|+|+||++|..+|.+- .+.++-++.
T Consensus 27 ~~v~~---l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~-----GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYG---LQAPGYGAGEQPFASLDDMAAAYVAAIRRVQPE-----GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeec---cccCcccccccccCCHHHHHHHHHHHHHHhCCC-----CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 55565 444555432223333445555444544443222 3799999999999999998753 123444444
Q ss_pred ecc
Q 002194 790 RSG 792 (954)
Q Consensus 790 ~~~ 792 (954)
+..
T Consensus 99 lD~ 101 (257)
T COG3319 99 LDA 101 (257)
T ss_pred ecc
Confidence 443
No 451
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.23 E-value=0.52 Score=54.06 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=81.4
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHCCcEEEEcCCCCCCCC----
Q 002194 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE---- 726 (954)
Q Consensus 651 ~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~---- 726 (954)
.|...+++|.++. ++ ++..-||.+. +.+.... .......-+++||+++.-|. |..+.
T Consensus 16 ~i~fev~LP~~WN-gR------~~~~GgGG~~-----G~i~~~~------~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~ 76 (474)
T PF07519_consen 16 NIRFEVWLPDNWN-GR------FLQVGGGGFA-----GGINYAD------GKASMATALARGYATASTDS-GHQGSAGSD 76 (474)
T ss_pred eEEEEEECChhhc-cC------eEEECCCeee-----Ccccccc------cccccchhhhcCeEEEEecC-CCCCCcccc
Confidence 7888899998652 22 4444444322 1111100 00002244689999998333 11111
Q ss_pred CCccc-----chhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCC
Q 002194 727 GDEEA-----NDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (954)
Q Consensus 727 G~~~~-----~~~~~~~~~~D~~~av~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~ 795 (954)
..++. -.+|....+.+...+.+.|.+.. ...|++-...|.|-||-.++++|-++|+.|.++|+.+|..+
T Consensus 77 ~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 77 DASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred cccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 11121 13455566777777888888763 35678999999999999999999999999999999999654
No 452
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.22 E-value=4 Score=44.93 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=36.3
Q ss_pred cCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCcc-----------CCCCC-CCeeeccCCcEEE
Q 002194 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY-----------SDPGS-PMMRRTSTGTYVI 525 (954)
Q Consensus 458 ~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~-----------~~~~~-~~~~~spdG~~l~ 525 (954)
+..+..|.|.|+|+++.+-.+ .|+.+|+... .+|+..-....+... ...+. .|++.|.||+.|+
T Consensus 314 itDI~iSlDDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 466889999999999988764 5777777765 466655332211111 11122 3588999999999
Q ss_pred EEE
Q 002194 526 AKI 528 (954)
Q Consensus 526 ~~~ 528 (954)
++.
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 886
No 453
>PRK13613 lipoprotein LpqB; Provisional
Probab=94.19 E-value=7 Score=46.15 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.4
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCce-----eecccCCCccccccccceeEecCCeEEEEE
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
....++.|+||+.+|+... ....||+-.+.++.. +.+..... +..+.|.++| .++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~~~~~~~~~~~~~~~~------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA--------DGDSVYVGSLTPGASIGVHSWGVTADGR------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcC--------CCcEEEEeccCCCCccccccceeeccCc------ccCCcCcCCC-CEEEe
Confidence 5678899999999999742 245788876544322 23332222 5688899888 56654
No 454
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=94.14 E-value=0.2 Score=51.66 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----C-----CcccEEEEeccCCCCCCCCCCCccccch
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P-----HLFCCGIARSGAYNRTLTPFGFQNEDRT 809 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 809 (954)
...++...++.|.+. ....+|.|++||||+.+.+.++... + .+|..+|..+|-.+...
T Consensus 75 s~~~l~~~L~~L~~~--~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~----------- 141 (233)
T PF05990_consen 75 SGPALARFLRDLARA--PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDV----------- 141 (233)
T ss_pred HHHHHHHHHHHHHhc--cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHH-----------
Confidence 345555666666555 2346999999999999999886542 1 25667777776433110
Q ss_pred hhhcHHHHHhcCcccccCCCCCCEEEEEeCCCCC
Q 002194 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (954)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~ 843 (954)
+...- ..+.+...++.+.+..+|..
T Consensus 142 -------f~~~~--~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 142 -------FRSQL--PDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred -------HHHHH--HHHhhcCCCEEEEEcCCchH
Confidence 00000 02233347899999999865
No 455
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.12 E-value=4.4 Score=45.59 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=61.8
Q ss_pred CceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhh
Q 002194 217 SKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQ 296 (954)
Q Consensus 217 ~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 296 (954)
+...||++++.+|+...-.... ...+.+....|+.+-..|+...
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~--~h~~~v~~~~~~~~~~ciyS~~---------------------------------- 121 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTD--KHYGNVNEILDAQRLGCIYSVG---------------------------------- 121 (541)
T ss_pred CCccEEEEEecCCeEEEEEecC--CCCCcceeeecccccCceEecC----------------------------------
Confidence 4778899998888764332211 1222355666776665555430
Q ss_pred hhccCccccccccccccceEEEEEe-CCceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEec
Q 002194 297 DLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTT 373 (954)
Q Consensus 297 d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~ 373 (954)
+..++..++. ++...++... ..+.+.++||||+.++..+ .+|.+|++
T Consensus 122 ---------------ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---------------~~ik~~~~ 171 (541)
T KOG4547|consen 122 ---------------ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---------------RQIKVLDI 171 (541)
T ss_pred ---------------CceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---------------ceEEEEEc
Confidence 2234445555 6655555443 5678899999999998876 27999999
Q ss_pred cCceEE
Q 002194 374 DGIFVR 379 (954)
Q Consensus 374 ~g~~~~ 379 (954)
+++++-
T Consensus 172 ~~kevv 177 (541)
T KOG4547|consen 172 ETKEVV 177 (541)
T ss_pred cCceEE
Confidence 987653
No 456
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.07 E-value=8.2 Score=39.73 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=23.0
Q ss_pred cCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCC
Q 002194 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPD 239 (954)
Q Consensus 197 SPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 239 (954)
.+++++|+... +...|+.+|+.+|+...-...+.
T Consensus 33 ~~~~~~v~~~~---------~~~~l~~~d~~tG~~~W~~~~~~ 66 (238)
T PF13360_consen 33 VPDGGRVYVAS---------GDGNLYALDAKTGKVLWRFDLPG 66 (238)
T ss_dssp EEETTEEEEEE---------TTSEEEEEETTTSEEEEEEECSS
T ss_pred EEeCCEEEEEc---------CCCEEEEEECCCCCEEEEeeccc
Confidence 44677777643 47899999998887654444433
No 457
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=8.8 Score=39.88 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=42.4
Q ss_pred eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEE
Q 002194 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (954)
Q Consensus 180 ~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~ 259 (954)
+++++.+ ..++..+|+||.+.|.-+. +....|.-++.+|.-.+.+.-..-.. .+.+.|.-+|+.++
T Consensus 79 kpi~g~~--~nvS~LTynp~~rtLFav~--------n~p~~iVElt~~GdlirtiPL~g~~D----pE~Ieyig~n~fvi 144 (316)
T COG3204 79 KPILGET--ANVSSLTYNPDTRTLFAVT--------NKPAAIVELTKEGDLIRTIPLTGFSD----PETIEYIGGNQFVI 144 (316)
T ss_pred ccccccc--ccccceeeCCCcceEEEec--------CCCceEEEEecCCceEEEecccccCC----hhHeEEecCCEEEE
Confidence 3454443 3589999999998876653 34567777887775555442211111 45788998887665
Q ss_pred E
Q 002194 260 C 260 (954)
Q Consensus 260 ~ 260 (954)
.
T Consensus 145 ~ 145 (316)
T COG3204 145 V 145 (316)
T ss_pred E
Confidence 3
No 458
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=0.096 Score=59.49 Aligned_cols=113 Identities=10% Similarity=0.085 Sum_probs=65.6
Q ss_pred eEEEEEe-CC-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002194 315 QLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (954)
Q Consensus 315 ~l~~~~~-~G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~~~p 391 (954)
.|-++|+ .+ ..+.|+.. ..+.++.|+|=|.+.+-.+. +.++.+||...........
T Consensus 93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-------------dtd~~iwD~Rk~Gc~~~~~-------- 151 (825)
T KOG0267|consen 93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST-------------DTDLKIWDIRKKGCSHTYK-------- 151 (825)
T ss_pred ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc-------------cccceehhhhccCceeeec--------
Confidence 4667788 55 56677766 77788899999988754442 3478889887332221111
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCC
Q 002194 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (954)
Q Consensus 392 ~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg 467 (954)
+...+++.+.|+|||+.++-- .....+-+||+ ..|.-......+.+.+..+-|.|-.
T Consensus 152 ----s~~~vv~~l~lsP~Gr~v~~g-------------~ed~tvki~d~--~agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 152 ----SHTRVVDVLRLSPDGRWVASG-------------GEDNTVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ----CCcceeEEEeecCCCceeecc-------------CCcceeeeecc--cccccccccccccccccccccCchh
Confidence 222456678999999854432 22345667774 2222222233344555555555544
No 459
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=93.91 E-value=3.7 Score=43.52 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=64.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCC--CCCCceeeeecCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPD--GKLGQEIEIQGFPD 187 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--g~~~~~~~lt~~~~ 187 (954)
-+.++.||.+|++||....+ ....+|.+..- ...-++.+|.+.++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD---------------------------------~~~~~W~~de~~~~k~~KPI~~~~~~H 104 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDD---------------------------------MHGRVWNVDELMVRKTPKPIGVMEHPH 104 (609)
T ss_pred ccceeeeccCCeEEeecCCc---------------------------------ceeeeechHHHHhhcCCCCceeccCcc
Confidence 36689999999999987765 35567776310 00112344555444
Q ss_pred CCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 188 ~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
...+....|-- |.+.+|. +....+|..-|+++.+...+...... .+.+..+.-+|-...++.+
T Consensus 105 ~SNIF~L~F~~-~N~~~~S--------G~~~~~VI~HDiEt~qsi~V~~~~~~--~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 105 RSNIFSLEFDL-ENRFLYS--------GERWGTVIKHDIETKQSIYVANENNN--RGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred ccceEEEEEcc-CCeeEec--------CCCcceeEeeecccceeeeeecccCc--ccceeecccCCCCceEEEE
Confidence 44677777764 5566674 33356788888888877766654431 1113445555655555544
No 460
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.83 E-value=7.5 Score=42.28 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=42.6
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
+...+|.-+-+.|++.. +-...|-+||+++|++.+.+...+.. +..+.|.|.--.+..+
T Consensus 246 vl~Ls~n~~~~nVLaSg--------saD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG--------SADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLS 304 (463)
T ss_pred HHHHHhccccceeEEec--------CCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEe
Confidence 45678888888888853 34677888899999998777644443 7899999876544443
No 461
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.68 E-value=14 Score=41.23 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=30.4
Q ss_pred CeEEEEECCCCCeEEEeccCcccccceeEEeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCceeE
Q 002194 552 PFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (954)
Q Consensus 552 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~s~~~p~~l~~~~~~~g~~~~ 623 (954)
..|+.+|.++|+. +|....... . ...+....++.+++... ...++.++..+|+...
T Consensus 289 G~l~~~d~~tG~~--~W~~~~~~~-----~-----~~ssp~i~g~~l~~~~~----~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 289 GVVVALDRRSGSE--LWKNDELKY-----R-----QLTAPAVVGGYLVVGDF----EGYLHWLSREDGSFVA 344 (377)
T ss_pred CeEEEEECCCCcE--EEccccccC-----C-----ccccCEEECCEEEEEeC----CCEEEEEECCCCCEEE
Confidence 3599999998864 454421100 0 00111223555555432 2469999988887644
No 462
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.59 E-value=0.91 Score=47.24 Aligned_cols=198 Identities=12% Similarity=0.132 Sum_probs=102.8
Q ss_pred eceEEEEccCCCCCCce-eeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCc-eeecccCCCc
Q 002194 163 TGIGIHQLFPDGKLGQE-IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDI 240 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~-~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~ 240 (954)
..+.+||+++ ++. ..+-. +...+.+..|+ +| .++.++ .+-...+|.++..+.. .+++.-+..
T Consensus 257 sTvrvWDv~t----ge~l~tlih--HceaVLhlrf~-ng-~mvtcS-------kDrsiaVWdm~sps~it~rrVLvGHr- 320 (499)
T KOG0281|consen 257 STVRVWDVNT----GEPLNTLIH--HCEAVLHLRFS-NG-YMVTCS-------KDRSIAVWDMASPTDITLRRVLVGHR- 320 (499)
T ss_pred ceEEEEeccC----CchhhHHhh--hcceeEEEEEe-CC-EEEEec-------CCceeEEEeccCchHHHHHHHHhhhh-
Confidence 5889999965 332 22222 33478889998 34 555554 2335667766644421 233322222
Q ss_pred cccccccceeEecCCeEEEEEecCCCCCCCCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEE
Q 002194 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (954)
Q Consensus 241 ~~~~~~~~~~wspDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~ 320 (954)
+.+..+.| |.++|+.+ + +...|-+++
T Consensus 321 ---AaVNvVdf--d~kyIVsA---------------------S----------------------------gDRTikvW~ 346 (499)
T KOG0281|consen 321 ---AAVNVVDF--DDKYIVSA---------------------S----------------------------GDRTIKVWS 346 (499)
T ss_pred ---hheeeecc--ccceEEEe---------------------c----------------------------CCceEEEEe
Confidence 22455555 55677755 1 223466667
Q ss_pred e-CCceeEcCCC--ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCceE-EEeccCCCcccCCccccc
Q 002194 321 L-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNS 396 (954)
Q Consensus 321 ~-~G~~~~l~~~--~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~~-~~l~~~~~~~~~p~~~~~ 396 (954)
. +++-.+...+ .++.-..+ .||.++..+.+ .+|.+||+..+.. +.|..++
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD-------------ntIRlwdi~~G~cLRvLeGHE----------- 400 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD-------------NTIRLWDIECGACLRVLEGHE----------- 400 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCC-------------ceEEEEeccccHHHHHHhchH-----------
Confidence 6 7765444433 33332222 47777766643 3899999985543 3333322
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE---------eecccccCceeeccCC
Q 002194 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL---------HKLDLRYGGISWCDDS 467 (954)
Q Consensus 397 ~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l---------~~~~~~~~~~~~spDg 467 (954)
.-++-+.| |.++|+-- ...+.|-+|++ .++-+++.. ..+.+++..+.| |.
T Consensus 401 --eLvRciRF--d~krIVSG-------------aYDGkikvWdl--~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~ 459 (499)
T KOG0281|consen 401 --ELVRCIRF--DNKRIVSG-------------AYDGKIKVWDL--QAALDPRAPASTLCLRTLVEHSGRVFRLQF--DE 459 (499)
T ss_pred --Hhhhheee--cCceeeec-------------cccceEEEEec--ccccCCcccccchHHHhhhhccceeEEEee--cc
Confidence 12233444 44555432 22456777775 233333322 334555666666 55
Q ss_pred ceEEEEEecc
Q 002194 468 LALVYESWYK 477 (954)
Q Consensus 468 ~~l~~~~~~~ 477 (954)
..|+..+-++
T Consensus 460 fqIvsssHdd 469 (499)
T KOG0281|consen 460 FQIISSSHDD 469 (499)
T ss_pred eEEEeccCCC
Confidence 6666655443
No 463
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.42 E-value=5.5 Score=41.49 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCC--CCCccCC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSD 509 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~~~ 509 (954)
.++|-+.++.....+.+..+..++.++.-++.+-+|..|+.++..+ +-|.++|+.+| +...-..+. ..++|.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG---TLIRIFdt~~g--~~l~E~RRG~d~A~iy~- 231 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG---TLIRIFDTEDG--TLLQELRRGVDRADIYC- 231 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc---EEEEEEEcCCC--cEeeeeecCCchheEEE-
Confidence 4678788761111223467788888899999999999998887654 45777788776 222222221 223444
Q ss_pred CCCCCeeeccCCcEEEEEE
Q 002194 510 PGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 510 ~~~~~~~~spdG~~l~~~~ 528 (954)
++||||++||+..+
T Consensus 232 -----iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 232 -----IAFSPNSSWLAVSS 245 (346)
T ss_pred -----EEeCCCccEEEEEc
Confidence 89999999999987
No 464
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=0.31 Score=51.80 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh----C----CCcccEEEEeccCC
Q 002194 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----PHLFCCGIARSGAY 794 (954)
Q Consensus 737 ~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~----p~~~~a~v~~~~~~ 794 (954)
.+-..++...+.+|.+...+ ++|.|+.||||.++++.++-+ . +..|+-+|..+|=.
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDi 234 (377)
T COG4782 171 NYSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDI 234 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCC
Confidence 44567788899999887644 589999999999999987643 1 23567777777643
No 465
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.37 E-value=0.31 Score=55.28 Aligned_cols=31 Identities=0% Similarity=-0.121 Sum_probs=21.4
Q ss_pred CceeEcCCCccccccccCCCCcEEEEEeecC
Q 002194 323 GTVKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (954)
Q Consensus 323 G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~ 353 (954)
.++..+..+-.+.+..|+++|..|++..+..
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 3444444444566789999999999987553
No 466
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.19 E-value=0.69 Score=52.35 Aligned_cols=87 Identities=18% Similarity=0.377 Sum_probs=45.8
Q ss_pred CcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002194 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (954)
Q Consensus 343 Gk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~ 421 (954)
|..|...+.. .+.+||.+++ .++++... .+..+.||+||+.+++..
T Consensus 117 G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~~val~t---- 163 (443)
T PF04053_consen 117 GNLLGVKSSD--------------FICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGELVALVT---- 163 (443)
T ss_dssp SSSEEEEETT--------------EEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSEEEEE-----
T ss_pred CcEEEEECCC--------------CEEEEEhhHcceeeEEecC---------------CCcEEEEECCCCEEEEEe----
Confidence 8888777622 5899999954 45555531 246789999999888871
Q ss_pred CCCccccccCCCeEEEEec--C-----CCCCC--CceEEeecccccCceeeccCCceEEEEE
Q 002194 422 GGDAKVEVTPRDIIYTQQA--E-----PVQGE--GPEILHKLDLRYGGISWCDDSLALVYES 474 (954)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~--~-----~~~g~--~~~~l~~~~~~~~~~~~spDg~~l~~~~ 474 (954)
.+.+++++. + +.+|- ....+..-...+.+..|-.| .++|+.
T Consensus 164 ----------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 164 ----------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp ----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ----------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 224555442 1 01111 12333333566777888665 666653
No 467
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=93.15 E-value=3.2 Score=42.95 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=77.0
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCc-ccHHHHHHHHCCcEEEEc
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGG 718 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~ 718 (954)
++..+++..| .++..++--+ +++.|++|-.|.=..... ..|... ....++.++.+ |.|..
T Consensus 23 ~e~~V~T~~G-~v~V~V~Gd~------~~~kpaiiTyhDlglN~~----------scFq~ff~~p~m~ei~~~-fcv~H- 83 (326)
T KOG2931|consen 23 QEHDVETAHG-VVHVTVYGDP------KGNKPAIITYHDLGLNHK----------SCFQGFFNFPDMAEILEH-FCVYH- 83 (326)
T ss_pred eeeeeccccc-cEEEEEecCC------CCCCceEEEecccccchH----------hHhHHhhcCHhHHHHHhh-eEEEe-
Confidence 4455665555 4777777422 113577888886311110 011111 12344556666 87777
Q ss_pred CCCCCCCC--CCcccchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEecc
Q 002194 719 PTTPIIGE--GDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (954)
Q Consensus 719 ~~~~~~G~--G~~~~~~~----~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (954)
.+..|+ |....+.. ..+.+.+++..+++++ .-+-|.-+|.-+|+++-+..|..+|+++-++|++++
T Consensus 84 --V~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f------~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~ 155 (326)
T KOG2931|consen 84 --VDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF------GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINC 155 (326)
T ss_pred --cCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhc------CcceEEEecccccHHHHHHHHhcChhheeEEEEEec
Confidence 333443 21111222 2445666677776665 235689999999999999999999999999999986
Q ss_pred C
Q 002194 793 A 793 (954)
Q Consensus 793 ~ 793 (954)
.
T Consensus 156 ~ 156 (326)
T KOG2931|consen 156 D 156 (326)
T ss_pred C
Confidence 4
No 468
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=92.92 E-value=0.41 Score=50.66 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcccHHHHHHHHC---C------cEEEEc
Q 002194 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---G------FAILGG 718 (954)
Q Consensus 648 ~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---G------~~V~~~ 718 (954)
.|.+|+-.-..|+.- ..++..+|++ ++||.|... + .|. .++..|... | |-|++
T Consensus 132 eGL~iHFlhvk~p~~-k~~k~v~PlL-l~HGwPGsv-------~----EFy----kfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQK-KKKKKVKPLL-LLHGWPGSV-------R----EFY----KFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCcc-ccCCcccceE-EecCCCchH-------H----HHH----hhhhhhcCccccCCccceeEEEec-
Confidence 688888887887653 3334456655 589986321 1 111 122233321 2 77888
Q ss_pred CCCCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEE
Q 002194 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (954)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~av~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (954)
....|||.+.++...+-..++ ....+. .+...+ -++..|-|.-+|.-++..++..+|+.+.+.=
T Consensus 194 --PSlPGygwSd~~sk~GFn~~a-~ArvmrkLMlRLg---~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 194 --PSLPGYGWSDAPSKTGFNAAA-TARVMRKLMLRLG---YNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred --cCCCCcccCcCCccCCccHHH-HHHHHHHHHHHhC---cceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 456788888765433222111 112222 223333 4689999999999999999999998876653
No 469
>PRK13614 lipoprotein LpqB; Provisional
Probab=92.89 E-value=5.4 Score=46.54 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=77.8
Q ss_pred eEEEEEeCCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccCCcc
Q 002194 315 QLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIA 393 (954)
Q Consensus 315 ~l~~~~~~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~p~~ 393 (954)
.++.....+..+.+......+.|+|+++| ++....+..+ ..+..+..++. +....... ...
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~-----------~~vv~~~~~g~~~~~~~~~~------~v~ 427 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGN-----------GRIVAYRPTGVAEGAQAPTV------TLT 427 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCC-----------ceEEEEecCCCcccccccce------eec
Confidence 46655554555555555668899999998 6665542221 13333332221 11000000 000
Q ss_pred cccccc-CccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec-----ccccCceeeccCC
Q 002194 394 FNSVRK-GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DLRYGGISWCDDS 467 (954)
Q Consensus 394 ~~~~~~-g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~-----~~~~~~~~~spDg 467 (954)
.....+ .+..+..|+||-+++..+.. ++..+|++-.+.-...+.++.|+.. ...+.+++|..++
T Consensus 428 ~~~l~g~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 428 ADWLAGRTVKELRVSREGVRALVISEQ----------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccCCCeeEEEEECCCccEEEEEEEe----------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 001112 25779999999999988432 2233455433211234555666432 2456778999998
Q ss_pred ceEEEEEeccccceEEEEEcCCCC
Q 002194 468 LALVYESWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~ 491 (954)
..++.....+ .+...+++.++++
T Consensus 498 sl~V~~~~~~-~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASAT-SNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCC-CcceEEEEEeCCC
Confidence 8666654333 2355677777554
No 470
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.83 E-value=3.3 Score=48.15 Aligned_cols=143 Identities=19% Similarity=0.087 Sum_probs=80.6
Q ss_pred ccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCCC
Q 002194 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (954)
Q Consensus 191 ~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~~ 270 (954)
...++.|+||+.+|+... ...||+-... +..+.+..... +..+.|.++| .++.....
T Consensus 336 ~~s~avS~dg~~~A~v~~---------~~~l~vg~~~-~~~~~~~~~~~------Lt~PS~d~~g-~vWtv~~g------ 392 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA---------SGVWSVGDGD-RDAVLLDTRPG------LVAPSLDAQG-YVWSTPAS------ 392 (557)
T ss_pred cccceEcCCCceEEEEcC---------CceEEEecCC-CcceeeccCCc------cccCcCcCCC-CEEEEeCC------
Confidence 367899999999999742 2366666533 45555544332 5688899998 67755110
Q ss_pred CCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCCceeEcCCC----ccccccccCCCCcEE
Q 002194 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP----AVYTSLDPSPDEKYI 346 (954)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G~~~~l~~~----~~~~~~~~SpDGk~l 346 (954)
....+.....+|+...+.-+ +.+..+.+|+||-++
T Consensus 393 -----------------------------------------~~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~ 431 (557)
T PRK13615 393 -----------------------------------------DPRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARV 431 (557)
T ss_pred -----------------------------------------CceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccEE
Confidence 00112222224444333222 468899999999999
Q ss_pred EEEeecCCcccccccCCCCcceEEEec--cCceEEEe-ccC-CCcccCCccccccccCccceeeccCCCCceEE
Q 002194 347 LISSIHRPYSFIVPCGRFPRQVGVWTT--DGIFVREL-CDL-PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (954)
Q Consensus 347 ~~~s~~~~~~~~~~~~~~~~~l~l~d~--~g~~~~~l-~~~-~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~ 416 (954)
+....... ..+|++--+ +++..+.| +.. ... .....+.++.|..|++ |+..
T Consensus 432 Avi~~~~g----------~~~V~va~V~R~~~~P~~L~~~p~~l~--------~~l~~v~sl~W~~~~~-laVl 486 (557)
T PRK13615 432 LVQLETGA----------GPQLLVASIVRDGGVPTSLTTTPLELL--------ASPGTPLDATWVDELD-VATL 486 (557)
T ss_pred EEEEecCC----------CCEEEEEEEEeCCCcceEeeeccEEcc--------cCcCcceeeEEcCCCE-EEEE
Confidence 99864322 124554333 34444555 321 000 0112456789999888 4444
No 471
>PLN02209 serine carboxypeptidase
Probab=92.69 E-value=0.61 Score=52.76 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=79.3
Q ss_pred EEEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCcc--------cHHHHHHHHC
Q 002194 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG--------STSVLLWLAR 711 (954)
Q Consensus 640 ~~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~la~~ 711 (954)
..+.+....+..+..+++.... ++. ..|+|+|+-|||.++.-......-+|.....-. ......|...
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~---~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQ---EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCC---CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 4455554456667777765432 222 379999999999776544333334443332110 0011133443
Q ss_pred CcEEEEcCCCCCCCCCCcccch--hhHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHHh----C----
Q 002194 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAH----A---- 780 (954)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~av~~l~-~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~---- 780 (954)
- .++..+..-.+|+....... ..-....+|+..++.... ..+.....++.|+|.||||..+-.++.. .
T Consensus 118 a-nllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 A-NIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred C-cEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 3 34442322233433221111 111233466666665443 3444445689999999999866665532 1
Q ss_pred -C-CcccEEEEeccCCC
Q 002194 781 -P-HLFCCGIARSGAYN 795 (954)
Q Consensus 781 -p-~~~~a~v~~~~~~~ 795 (954)
+ =.++++++..|..+
T Consensus 197 ~~~inl~Gi~igng~td 213 (437)
T PLN02209 197 NPPINLQGYVLGNPITH 213 (437)
T ss_pred CCceeeeeEEecCcccC
Confidence 0 13678888888655
No 472
>PRK13613 lipoprotein LpqB; Provisional
Probab=92.63 E-value=3.8 Score=48.26 Aligned_cols=107 Identities=13% Similarity=0.225 Sum_probs=62.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCc-eeeeecCCCC
Q 002194 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDG 188 (954)
Q Consensus 110 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~-~~~lt~~~~~ 188 (954)
...++++|+||+.+|++..+ . ..+++-.+...++... .+.+. .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~-----------------------~---------~~l~vg~~~~~~~~~~~~~~~~---~~ 408 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD-----------------------G---------DSVYVGSLTPGASIGVHSWGVT---AD 408 (599)
T ss_pred CccceEEcCCCceEEEEcCC-----------------------C---------cEEEEeccCCCCccccccceee---cc
Confidence 45678999999999998653 0 2466655533221000 12221 23
Q ss_pred CcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccc-cccceeEecCCeEEEEE
Q 002194 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 189 ~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~-~~~~~~wspDG~~l~~~ 261 (954)
.....|+|.++| +|... +. +.++..-|+++.. +|+...+.. + ++.+ .|..+.-|+||-++++.
T Consensus 409 ~~Lt~PS~d~~g-~vWtv-d~----~~~~~~vl~v~~~-~G~~~~V~~-~--~l~g~~I~~lrvSrDG~RvAvv 472 (599)
T PRK13613 409 GRLTSPSWDGRG-DLWVV-DR----DPADPRLLWLLQG-DGEPVEVRT-P--ELDGHRVVAVRVARDGVRVALI 472 (599)
T ss_pred CcccCCcCcCCC-CEEEe-cC----CCCCceEEEEEcC-CCcEEEeec-c--ccCCCEeEEEEECCCccEEEEE
Confidence 457889999998 65543 21 1222333666654 555544432 1 2222 47899999999999987
No 473
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=92.56 E-value=0.35 Score=48.02 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCCCCc----ccchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 002194 713 FAILGGPTTPIIGEGDE----EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~----~~~~~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~ 780 (954)
..|+++.|+-..-+... ..........+.|+.+|.++-+++.. +..+++|+|||.|+.+...++-..
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHH
Confidence 55666666544322211 11233455679999999998887742 235799999999999999998653
No 474
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.51 E-value=9.9 Score=44.29 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=73.9
Q ss_pred CCceeEcCCCccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccC
Q 002194 322 DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKG 400 (954)
Q Consensus 322 ~G~~~~l~~~~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~g 400 (954)
.+..+.+........|+|+++| ++....+.. ...+.... .++...+.. +... ...
T Consensus 363 ~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-------------~~~l~~~~~~G~~~~v~v-~~~~---------~~~ 418 (557)
T PRK13615 363 DRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-------------PRGLVAWGPDGVGHPVAV-SWTA---------TGR 418 (557)
T ss_pred CCcceeeccCCccccCcCcCCC-CEEEEeCCC-------------ceEEEEecCCCceEEeec-cccC---------CCe
Confidence 4455555555668899999999 666554222 11122221 122222211 1111 123
Q ss_pred ccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEE-ee------cccccCceeeccCCceEEEE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HK------LDLRYGGISWCDDSLALVYE 473 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l-~~------~~~~~~~~~~spDg~~l~~~ 473 (954)
+..+..|+||-+++..++. .+.++|++-.+.- +++.++.| +. ....+.++.|..|++.++..
T Consensus 419 I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 419 VVSLEVARDGARVLVQLET----------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred eEEEEeCCCccEEEEEEec----------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 5678999999999998543 2234565544311 34444455 32 22356678999998866665
Q ss_pred EeccccceEEEEEcCCCC
Q 002194 474 SWYKTRRTRTWVISPGSK 491 (954)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~ 491 (954)
.... ....++++.++++
T Consensus 488 ~~~~-~~~~v~~v~v~g~ 504 (557)
T PRK13615 488 LAPD-GERQVELHQVGGP 504 (557)
T ss_pred ccCC-CCceEEEEECCCc
Confidence 3322 2356788888764
No 475
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=92.49 E-value=20 Score=39.70 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=80.2
Q ss_pred EEEEEe-C-C-ceeEcCCC-ccccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCc-eEEEeccCCCcccC
Q 002194 316 LVLVSL-D-G-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDI 390 (954)
Q Consensus 316 l~~~~~-~-G-~~~~l~~~-~~~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~-~~~~l~~~~~~~~~ 390 (954)
+..++. . + ....+... ..+..+.|+|+++.++.... ....+.+|++..+ ....+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~------- 196 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------------LDGTIKLWDLRTGKPLSTLAG------- 196 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------------CCCceEEEEcCCCceEEeecc-------
Confidence 445555 3 2 33334333 66678999999996666542 1237889998853 3333332
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceE--EeecccccCceeeccCCc
Q 002194 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSL 468 (954)
Q Consensus 391 p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~--l~~~~~~~~~~~~spDg~ 468 (954)
....+..++|+|+++. ++.. . +....+.+|+. ..+.... +..+.... ...|+|++.
T Consensus 197 ------~~~~v~~~~~~~~~~~-~~~~-~----------~~d~~i~~wd~---~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 197 ------HTDPVSSLAFSPDGGL-LIAS-G----------SSDGTIRLWDL---STGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred ------CCCceEEEEEcCCcce-EEEE-e----------cCCCcEEEEEC---CCCcEEeeecCCCCcce-eEeECCCCC
Confidence 1134567889999982 2221 0 12334556664 2222222 22222221 227999996
Q ss_pred eEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEE
Q 002194 469 ALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 527 (954)
.++... .++ ..++|.+.... ........+...+.. +.|+|++..++..
T Consensus 255 ~~~~~~-~d~-~~~~~~~~~~~---~~~~~~~~~~~~v~~------~~~~~~~~~~~~~ 302 (466)
T COG2319 255 LLASGS-SDG-TIRLWDLRSSS---SLLRTLSGHSSSVLS------VAFSPDGKLLASG 302 (466)
T ss_pred EEEEec-CCC-cEEEeeecCCC---cEEEEEecCCccEEE------EEECCCCCEEEEe
Confidence 555332 222 24555544333 112222222222222 5688888777663
No 476
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=92.44 E-value=0.3 Score=45.85 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 002194 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 738 ~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
.....+...++.+.++.. +.+|.++|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 344556666666665543 3689999999999999988875
No 477
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=92.42 E-value=24 Score=41.14 Aligned_cols=104 Identities=10% Similarity=0.046 Sum_probs=56.7
Q ss_pred cCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeec---ccccCceeeccCCceEEEEEe
Q 002194 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL---DLRYGGISWCDDSLALVYESW 475 (954)
Q Consensus 399 ~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~---~~~~~~~~~spDg~~l~~~~~ 475 (954)
+.+..+.++|=+..++.. .++-.+.+|.- +-....+... ...+..++|||---.+++..+
T Consensus 399 g~v~~v~~nPF~~k~fls-------------~gDW~vriWs~----~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLS-------------VGDWTVRIWSE----DVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred cceEeeecCCCccceeee-------------eccceeEeccc----cCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 345667888877765544 12224555542 2122334322 223677999999888888776
Q ss_pred ccccceEEEEEcCCCCCCCcEEEecCCCCCccCCCCCCCeeeccCCcEEEEEE
Q 002194 476 YKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (954)
Q Consensus 476 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 528 (954)
.++ +..||.+-.+. ..|...-... .+..+.+.|++.|+.|+...
T Consensus 462 ~~G-~l~iWDLl~~~--~~Pv~s~~~~------~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 462 GDG-NLDIWDLLQDD--EEPVLSQKVC------SPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred CCC-ceehhhhhccc--cCCccccccc------ccccceeecCCCCcEEEEec
Confidence 654 24455444333 2333221111 11223378999999988876
No 478
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=18 Score=44.36 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=37.2
Q ss_pred eecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEe
Q 002194 195 TWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (954)
Q Consensus 195 ~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~ 262 (954)
..|||.+.+++..+.....-.......++.+..++. .......+. ..+..+.|+|.|+.++|+.
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~wsp~~~~l~yv~ 166 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLHPPEYEG---SKIQYASWSPLGNDLAYVL 166 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-cccCcccCC---CeeEEEEEcCCCCEEEEEE
Confidence 778999999997653211112223445666666665 111111111 1145788999998888873
No 479
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.29 E-value=4.5 Score=43.64 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
+....++...|.-|+.+ |.-.-||.++.+++.+..++...++.--...+.+...++| .|+|+....
T Consensus 116 RPLGl~f~~~ggdL~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSs---- 181 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSS---- 181 (376)
T ss_pred CcceEEeccCCCeEEEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEecccc----
Confidence 45567888888666553 2467899999999998888765443211113466677755 566661100
Q ss_pred CCCCCCCCCCceeeccCCceeeech-hhhhccCccccccccccccceEEEEEe-CCceeEcCCC-ccccccccCCCCcEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRT-FQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~-~~d~l~~~~d~~~~~~~~~~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l 346 (954)
.++.|. ..+.+..+ ..++++++|. +...+.|-.+ ....+++.|||+.++
T Consensus 182 -------------------k~~~rd~~~a~l~g~---------~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 182 -------------------KYDRRDFVFAALEGD---------PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred -------------------ccchhheEEeeecCC---------CccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 011111 01111111 3467899998 7777777776 777889999999999
Q ss_pred EEEeec
Q 002194 347 LISSIH 352 (954)
Q Consensus 347 ~~~s~~ 352 (954)
++....
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 998743
No 480
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.16 E-value=0.43 Score=45.67 Aligned_cols=52 Identities=15% Similarity=0.053 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC----cccEEEEecc
Q 002194 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSG 792 (954)
Q Consensus 739 ~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~ 792 (954)
....+...++....+ ....+|.++|||+||.+|..++..... ....+++.++
T Consensus 10 ~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 10 LANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 344444444444433 234689999999999999998876543 3344444444
No 481
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.13 E-value=5.4 Score=44.45 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=25.1
Q ss_pred ceEEEEEe-CCceeEcCCC-ccccccccCCCCcEEE
Q 002194 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~~-~~~~~~~~SpDGk~l~ 347 (954)
..|++++. +++.+.+..+ .....++|+|+|+.++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEE
Confidence 46999999 5566666655 5567899999997743
No 482
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.98 E-value=3.6 Score=45.83 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=39.1
Q ss_pred ccceeeccCCCCceEEEEeccCCC---c----cccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceE
Q 002194 401 MRSINWRSDKPSTLYWAETQDGGD---A----KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (954)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l 470 (954)
...+.|.|||+ |++......+.. . .......+.++.++. ++++.+.+..+-.....++|+|+|+.+
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEecCcCCCccceECCCCCEE
Confidence 45789999996 444322110000 0 001122357888885 666677776665566789999998754
No 483
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=12 Score=38.86 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeeeeeecCCCCCCcceeeEeceEEEEccCCCCCCceeeeec-C-CCC
Q 002194 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG-F-PDG 188 (954)
Q Consensus 111 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~~~~~lt~-~-~~~ 188 (954)
+..++|.+-|+++|..+.+ ..+.||+...+. +. ..+|. - .++
T Consensus 16 ihdVs~D~~GRRmAtCSsD---------------------------------q~vkI~d~~~~s--~~-W~~Ts~Wrah~ 59 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSD---------------------------------QTVKIWDSTSDS--GT-WSCTSSWRAHD 59 (361)
T ss_pred eeeeeecccCceeeeccCC---------------------------------CcEEEEeccCCC--Cc-eEEeeeEEecC
Confidence 4568899999999998876 478888864322 22 22221 0 133
Q ss_pred CcccceeecC--CCCeEEEEEeeccccCCCCceEEEEE
Q 002194 189 AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVA 224 (954)
Q Consensus 189 ~~~~~~~wSP--DG~~iaf~~~~~~~~~~~~~~~l~~~ 224 (954)
+.+-.+.|.+ =|+-||.++. +....||-=
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~-------Drtv~iWEE 90 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSY-------DRTVSIWEE 90 (361)
T ss_pred CcEEEEEecCccccceEEEEec-------CCceeeeee
Confidence 4677788865 5788888763 335566643
No 484
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.79 E-value=10 Score=42.34 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcccEEEEeccCCCCCCC--------CCCCcc
Q 002194 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--------PFGFQN 805 (954)
Q Consensus 734 ~~~~~~~~D~~~av~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~~~~~~--------~~~~~~ 805 (954)
.+-....+=+..++++| ..+.+.+.+.|.|||-+-|+..++.-. -.|+|..-|+.+.... +-.|..
T Consensus 336 eyE~~I~~~I~~~L~~L----gF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL~NLGtiA~n~rL~RP~~F~T 409 (511)
T TIGR03712 336 EYEQGIINVIQEKLDYL----GFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPLVNLGTIASRMRLDRPDEFGT 409 (511)
T ss_pred HHHHHHHHHHHHHHHHh----CCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcccchhhhhccccccCCCCCch
Confidence 34333444444444444 357789999999999999999998752 3677777787664321 111111
Q ss_pred c--------cchhhhc----HHHHHhcCcccccCCCCCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002194 806 E--------DRTLWEA----TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (954)
Q Consensus 806 ~--------~~~~~~~----~~~~~~~sp~~~~~~~~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (954)
. ...-.++ .+.+++ -+.+.+--++.+.+..=.+|..- ...-.++...|...++++--.-+||
T Consensus 410 slDvl~~~~g~~s~~~i~~ln~~fW~--~f~~~d~S~T~F~i~YM~~DDYD---~~A~~~L~~~l~~~~~~v~~kG~~G- 483 (511)
T TIGR03712 410 ALDILLLNTGGTSSEDVVKLDNRFWK--KFKKSDLSKTTFAIAYMKNDDYD---PTAFQDLLPYLSKQGAQVMSKGIPG- 483 (511)
T ss_pred HHHhHHhhcCCCCHHHHHHHHHHHHH--HHhhcCcccceEEEEeeccccCC---HHHHHHHHHHHHhcCCEEEecCCCC-
Confidence 0 0000000 011111 11222222455555555555543 3455678888887777665555665
Q ss_pred CCcCCCcccHHHHHHHHHHHHHHh
Q 002194 874 SHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.|.-. ...|..||-.+
T Consensus 484 RHNDd--------s~~i~~WF~n~ 499 (511)
T TIGR03712 484 RHNDD--------SPTVNSWFINF 499 (511)
T ss_pred CCCCC--------chHHHHHHHHH
Confidence 56532 13456666544
No 485
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=91.55 E-value=0.17 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.6
Q ss_pred CCcEEEEeeChHHHHHHHHHHh
Q 002194 758 PSKIAVGGHSYGAFMTANLLAH 779 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~ 779 (954)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877663
No 486
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.32 E-value=0.52 Score=51.04 Aligned_cols=191 Identities=9% Similarity=0.072 Sum_probs=110.1
Q ss_pred cccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEEecCCCCCC
Q 002194 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (954)
Q Consensus 190 ~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~~~~~~~~~ 269 (954)
......++-+|++|++.. -..+|-.+|-.++....=....+ .+.++.|-.+.++++++
T Consensus 131 GPY~~~ytrnGrhlllgG---------rKGHlAa~Dw~t~~L~~Ei~v~E-----tv~Dv~~LHneq~~AVA-------- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGG---------RKGHLAAFDWVTKKLHFEINVME-----TVRDVTFLHNEQFFAVA-------- 188 (545)
T ss_pred CCeeeeecCCccEEEecC---------Cccceeeeecccceeeeeeehhh-----hhhhhhhhcchHHHHhh--------
Confidence 356678899999999943 35677777766665532222222 26788898888888766
Q ss_pred CCCCCCCCCCceeeccCCceeeechhhhhccCccccccccccccceEEEEEeCC-ceeEcCCCccccccccCCCCcEEEE
Q 002194 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILI 348 (954)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~r~~~d~l~~~~d~~~~~~~~~~~l~~~~~~G-~~~~l~~~~~~~~~~~SpDGk~l~~ 348 (954)
....+|+||-.| +..-|-....+....|-|-- +|+.
T Consensus 189 ------------------------------------------QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyH-fLL~ 225 (545)
T KOG1272|consen 189 ------------------------------------------QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYH-FLLV 225 (545)
T ss_pred ------------------------------------------hhceEEEecCCCcEEeehhhcCchhhhcccchh-heee
Confidence 334588888855 56666555667778888864 4444
Q ss_pred EeecCCcccccccCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002194 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (954)
Q Consensus 349 ~s~~~~~~~~~~~~~~~~~l~l~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (954)
+.+..+ -+...|+..++ +..+....+.. ..+.=.|-.. ++-. |
T Consensus 226 ~~~~~G------------~L~Y~DVS~GklVa~~~t~~G~~-------------~vm~qNP~Na-Vih~-----G----- 269 (545)
T KOG1272|consen 226 AASEAG------------FLKYQDVSTGKLVASIRTGAGRT-------------DVMKQNPYNA-VIHL-----G----- 269 (545)
T ss_pred ecccCC------------ceEEEeechhhhhHHHHccCCcc-------------chhhcCCccc-eEEE-----c-----
Confidence 443322 44555666433 22222211110 0111111110 1111 0
Q ss_pred cccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEc
Q 002194 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (954)
Q Consensus 428 ~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d 487 (954)
..++.|-+|. |........+..+.+.+.++++.++|++++.+.-+. ...||.+.
T Consensus 270 --hsnGtVSlWS--P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr--~~kIWDlR 323 (545)
T KOG1272|consen 270 --HSNGTVSLWS--PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR--KVKIWDLR 323 (545)
T ss_pred --CCCceEEecC--CCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc--ceeEeeec
Confidence 2245666776 233333345566788899999999999999875443 25566554
No 487
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=91.32 E-value=2.2 Score=42.85 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=25.9
Q ss_pred CCcEEEEeeChHHHHHHHHHHh---CCCcccEEEEecc
Q 002194 758 PSKIAVGGHSYGAFMTANLLAH---APHLFCCGIARSG 792 (954)
Q Consensus 758 ~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~~ 792 (954)
..++.++|||+||.++..++.+ .+..+..++.+.+
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 3578999999999999888775 3345666665543
No 488
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=91.17 E-value=0.91 Score=51.40 Aligned_cols=150 Identities=14% Similarity=0.068 Sum_probs=76.4
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCC-----C---cccHHHHHHHHCC
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-----R---IGSTSVLLWLARG 712 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~la~~G 712 (954)
.+++....+..+..|++.... ++. ..|+|+|+-|||.++.-......-+|.... . .-....-.|....
T Consensus 41 y~~v~~~~~~~lfy~f~es~~-~~~---~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 116 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSEN-NPK---EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMA 116 (433)
T ss_pred EEEecCCCCeEEEEEEEecCC-Ccc---cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcC
Confidence 344443445677777775432 222 379999999998776533223333332211 0 0000112334433
Q ss_pred cEEEEcCCCCCCCCCCcccchhhH--HHHHHHHHHHHHH-HHHcCCCCCCcEEEEeeChHHHHHHHHHHh----C-----
Q 002194 713 FAILGGPTTPIIGEGDEEANDRFV--EQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----- 780 (954)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~--~~~~~D~~~av~~-l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~----- 780 (954)
- ++..+..-.+|+.......... ....+|+..++.. +...+..-..++.|+|.||||..+-.+|.. .
T Consensus 117 n-llfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 N-IIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred c-EEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 3 3332322223332211111110 1223566655553 344454455689999999999876665542 1
Q ss_pred -CCcccEEEEeccCCC
Q 002194 781 -PHLFCCGIARSGAYN 795 (954)
Q Consensus 781 -p~~~~a~v~~~~~~~ 795 (954)
+=.++++++..|..+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 114788888888655
No 489
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=1.2 Score=44.93 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=38.4
Q ss_pred ccCCCCCC-----EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHh
Q 002194 825 SANKLKKP-----ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (954)
Q Consensus 825 ~~~~~~~P-----~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (954)
.+.+..+| +.++.+++|..+| -.....+.+.. .|..+++ .+ .||.-...-....+.+.|.+-|++.
T Consensus 296 ~v~~fp~Pvdpsl~ivv~A~~D~Yip--r~gv~~lQ~~W--Pg~eVr~--~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 296 HVANFPVPVDPSLIIVVQAKEDAYIP--RTGVRSLQEIW--PGCEVRY--LE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred hhhcCCCCCCCCeEEEEEecCCcccc--ccCcHHHHHhC--CCCEEEE--ee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 44454444 5667799999987 53334443332 3555554 44 4897543333455666788877764
No 490
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=91.01 E-value=6 Score=45.02 Aligned_cols=57 Identities=7% Similarity=0.103 Sum_probs=35.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceeecCCCCeEEEEEeeccccCCCCceEEEEEECCC
Q 002194 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT 228 (954)
Q Consensus 163 ~~l~l~~~~~~g~~~~~~~lt~~~~~~~~~~~~wSPDG~~iaf~~~~~~~~~~~~~~~l~~~d~~~ 228 (954)
..+..|++++.+-.|. +...+ +...+....|+|+..-+..+ +.+++..-||.+...+
T Consensus 122 sT~r~Wdvk~s~l~G~-~~~~G--H~~SvkS~cf~~~n~~vF~t------GgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGG-RLNLG--HTGSVKSECFMPTNPAVFCT------GGRDGEILLWDCRCNG 178 (720)
T ss_pred ceeeeeeeccceeecc-eeecc--cccccchhhhccCCCcceee------ccCCCcEEEEEEeccc
Confidence 5789999975321111 11222 22467888999998755443 4567888888877665
No 491
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=90.77 E-value=2.9 Score=44.80 Aligned_cols=39 Identities=8% Similarity=-0.106 Sum_probs=26.4
Q ss_pred CCceEEeecccccCceeeccCCceEEEEEeccccceEEEEEcC
Q 002194 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (954)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~ 488 (954)
+..+.+..+--.+..++||||++.|.++. ++. +|++...
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaD-RDE---kIRvs~y 180 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITAD-RDE---KIRVSRY 180 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEec-CCc---eEEEEec
Confidence 45556666666778899999999888874 332 3555443
No 492
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=6.1 Score=42.77 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=59.8
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHhcccC
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (954)
..+.|.+.+..|.++| ..+.+++.+..+..|..++-+-+.+..|.-........+.+...+|+.......
T Consensus 225 ~~~~ly~~s~~d~v~~--~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLP--ADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred cccceeecCCcccccc--HHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccccc
Confidence 4678888899999998 889999989999999999999999999987656667788899999999876543
No 493
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=90.38 E-value=9.5 Score=38.82 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=65.1
Q ss_pred ccccccCCCCcEEEEEeecCCcccccccCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002194 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (954)
Q Consensus 334 ~~~~~~SpDGk~l~~~s~~~~~~~~~~~~~~~~~l~l~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~wspDg~ 411 (954)
..+..+|+|++|++.+.... +++.|.++... ...++.-+.. .+....+||....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~-------------~Vf~y~id~~sey~~~~~~a~t~-----------D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSR-------------RVFRYAIDDESEYIENIYEAPTS-----------DHGFYNSFSENDL 216 (344)
T ss_pred eeeeEEcCCCceEEEecCCC-------------cceEEEeCCccceeeeeEecccC-----------CCceeeeeccCcc
Confidence 56788999999999887433 78888887432 2222211111 1223456776665
Q ss_pred CceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEE----eecccccCceeeccCCce-EEEEEeccccceEEEE
Q 002194 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EIL----HKLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWV 485 (954)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l----~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~l~~ 485 (954)
..+.. .+ .+.+-+||+ ..-+.+ ... ..+.+.+....||+-|-. |+|-++ +.+++.+
T Consensus 217 ~FAv~--~Q-----------dg~~~I~DV--R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv 278 (344)
T KOG4532|consen 217 QFAVV--FQ-----------DGTCAIYDV--RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHV 278 (344)
T ss_pred eEEEE--ec-----------CCcEEEEEe--cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEE
Confidence 44443 33 334555554 111111 111 235677788899986643 444432 3467888
Q ss_pred EcCCCC
Q 002194 486 ISPGSK 491 (954)
Q Consensus 486 ~d~~~~ 491 (954)
+|+.++
T Consensus 279 ~D~R~~ 284 (344)
T KOG4532|consen 279 VDTRNY 284 (344)
T ss_pred EEcccC
Confidence 998876
No 494
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=90.38 E-value=17 Score=42.74 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCeEEEEecCCCCCCCceEEeec-ccccCceeeccCCceEEEEEeccccceEEEEEcCCCCCCCcEEEecCCCCCccCCC
Q 002194 432 RDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (954)
Q Consensus 432 ~~~l~~~~~~~~~g~~~~~l~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 510 (954)
.++|-+..+ +|.+.+.|... -....++...+=++.|+|+.|... +-.|-..++++. +.+++.+.......+
T Consensus 1089 lD~IevA~L---dG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe-nPkIets~mDG~--NrRilin~DigLPNG-- 1160 (1289)
T KOG1214|consen 1089 LDKIEVALL---DGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE-NPKIETSSMDGE--NRRILINTDIGLPNG-- 1160 (1289)
T ss_pred cchhheeec---CCceeeEEEeecccCcceEEeecccCceeecccccc-CCcceeeccCCc--cceEEeecccCCCCC--
Confidence 345555543 77777777443 345577888888899999988654 366888888885 556665554433222
Q ss_pred CCCCeeeccCCcEEEEE
Q 002194 511 GSPMMRRTSTGTYVIAK 527 (954)
Q Consensus 511 ~~~~~~~spdG~~l~~~ 527 (954)
+.|.|..+.|-|.
T Consensus 1161 ----Ltfdpfs~~LCWv 1173 (1289)
T KOG1214|consen 1161 ----LTFDPFSKLLCWV 1173 (1289)
T ss_pred ----ceeCcccceeeEE
Confidence 4555555554444
No 495
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=90.33 E-value=5.1 Score=43.02 Aligned_cols=38 Identities=8% Similarity=0.288 Sum_probs=23.2
Q ss_pred eEEEEEECCCCceeecccCCCccccccccceeEecCCeEEEEE
Q 002194 219 LRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (954)
Q Consensus 219 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDG~~l~~~ 261 (954)
.++.++.++.+..+.+.-+-.. +..++||||+++|.++
T Consensus 132 ~~~di~s~~~~~~~~~lGhvSm-----l~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPILGHVSM-----LLDVAVSPDDQFIITA 169 (390)
T ss_pred eeeeeecccccCcchhhhhhhh-----hheeeecCCCCEEEEe
Confidence 3444444444555544332222 5689999999999876
No 496
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.19 E-value=15 Score=41.76 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=80.6
Q ss_pred ceEEEEEe-CCceeEcCC---CccccccccCCCCcEEEEEeecC-CcccccccCCCCcceEEEeccCceEEEeccCCCcc
Q 002194 314 TQLVLVSL-DGTVKEIGP---PAVYTSLDPSPDEKYILISSIHR-PYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE 388 (954)
Q Consensus 314 ~~l~~~~~-~G~~~~l~~---~~~~~~~~~SpDGk~l~~~s~~~-~~~~~~~~~~~~~~l~l~d~~g~~~~~l~~~~~~~ 388 (954)
.+|.++.. .++...+.- ......+.||-...+.+++-... +. .++..-+..+|+...++.+++.....
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~-----~g~~~~d~ciYE~~r~klqrvsvtsi-- 256 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISV-----KGEPSADSCIYECSRNKLQRVSVTSI-- 256 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCC-----CCCceeEEEEEEeecCceeEEEEEEE--
Confidence 45777777 445444432 13334566666444444432211 10 01112255677777666655432111
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCceEEeecccccCceeeccCCc
Q 002194 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL 468 (954)
Q Consensus 389 ~~p~~~~~~~~g~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~l~~~~~~~~~~~~spDg~ 468 (954)
| ....+...+++|+.++++.- -..+.|.+||. ......++........++|.|||.
T Consensus 257 --p-----L~s~v~~ca~sp~E~kLvlG-------------C~DgSiiLyD~----~~~~t~~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 257 --P-----LPSQVICCARSPSEDKLVLG-------------CEDGSIILYDT----TRGVTLLAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred --e-----cCCcceEEecCcccceEEEE-------------ecCCeEEEEEc----CCCeeeeeeecccceEEEEcCCCc
Confidence 1 12345678999999988876 23557889984 334555666666778899999999
Q ss_pred eEEEEEeccccceEEEEEcCC
Q 002194 469 ALVYESWYKTRRTRTWVISPG 489 (954)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~ 489 (954)
.++..+.. ++|..+|..
T Consensus 313 i~~V~s~q----GelQ~FD~A 329 (545)
T PF11768_consen 313 IFVVGSEQ----GELQCFDMA 329 (545)
T ss_pred EEEEEcCC----ceEEEEEee
Confidence 88877543 345555544
No 497
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=9.1 Score=38.70 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=30.6
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCCcCC
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (954)
..-+-+..|+.|.-|| ......+-+.+.+ .++++.. .+..|.|-
T Consensus 242 ~d~l~Fyygt~DgW~p--~~~~d~~kdd~~e--ed~~Lde-dki~HAFV 285 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVP--SHYYDYYKDDVPE--EDLKLDE-DKIPHAFV 285 (301)
T ss_pred CcEEEEEccCCCCCcc--hHHHHHHhhhcch--hceeecc-ccCCccee
Confidence 4668888999999998 6665555555443 3456655 66789874
No 498
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=89.90 E-value=2.8 Score=47.28 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=81.2
Q ss_pred EEEEEcCCCeEEEEEEEcCCCCCCCCCCCccEEEEECCCCCcCcccCccccCCCCCCCCccc---HHHHHHHHCCcEEEE
Q 002194 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAILG 717 (954)
Q Consensus 641 ~~~~~~~~g~~l~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~V~~ 717 (954)
-+.+....+..+..|++.-.. .|.. -|+|||+-|||.++.-.+....-+|-....-+. ...-.|.... .++.
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~~---dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~a-NiLf 122 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPET---DPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEA-NILF 122 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCCC---CCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccc-cEEE
Confidence 455655678889988885432 2333 699999999998876554443444422221111 0000122222 2222
Q ss_pred cCCCCCCCCCCcccch---hhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEeeChHHHHHHHHH----HhC-----C-Cc
Q 002194 718 GPTTPIIGEGDEEAND---RFVEQLVACAEAAV-EEVVRRGVAHPSKIAVGGHSYGAFMTANLL----AHA-----P-HL 783 (954)
Q Consensus 718 ~~~~~~~G~G~~~~~~---~~~~~~~~D~~~av-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a----~~~-----p-~~ 783 (954)
.+-.-.+|+..+.... .--....+|...++ +|+.+.+..-.+.+.|+|-||+|..+-.+| ..+ | =-
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 1111122332221111 11123345554444 577777776677899999999996554444 332 1 14
Q ss_pred ccEEEEeccCCC
Q 002194 784 FCCGIARSGAYN 795 (954)
Q Consensus 784 ~~a~v~~~~~~~ 795 (954)
+++.+...|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 789999888765
No 499
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=89.82 E-value=34 Score=40.25 Aligned_cols=66 Identities=8% Similarity=-0.073 Sum_probs=35.1
Q ss_pred ceeeccCCCCceEEEEeccCCCccccccCCCeEEEEecCCCCCCCc-eEEeecccccCceeeccCCce-EEEEEeccccc
Q 002194 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLA-LVYESWYKTRR 480 (954)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-~~l~~~~~~~~~~~~spDg~~-l~~~~~~~~~~ 480 (954)
.++|+|--+.++|..- ...++++|+ +-... ..+.-..+....+.|-||+++ .+|..-.+++
T Consensus 235 ~faf~p~~rn~lfi~~-------------prellv~dl---e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~- 297 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITF-------------PRELLVFDL---EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR- 297 (1062)
T ss_pred hhhcChhhhceEEEEe-------------ccceEEEcc---hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCe-
Confidence 4788998888888721 235777775 22221 111112233445778888765 4454433332
Q ss_pred eEEEE
Q 002194 481 TRTWV 485 (954)
Q Consensus 481 ~~l~~ 485 (954)
..||+
T Consensus 298 ltirv 302 (1062)
T KOG1912|consen 298 LTIRV 302 (1062)
T ss_pred EEEEE
Confidence 34444
No 500
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=89.61 E-value=0.45 Score=54.55 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCCCCCCCchHHHHHHHHHHHhCC--C------cEEEEEeCCCCCcCCCc-ccHHHHHHHHHHHHHHh
Q 002194 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG--A------LCRLVILPFESHGYAAR-ESIMHVLWETDRWLQKY 897 (954)
Q Consensus 830 ~~P~Lii~G~~D~~v~~~~~~~~~~~~~l~~~g--~------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~ 897 (954)
...+|+.||..|..|| +..+.++|+++...- . =++|...||++|..... ....+.+..+.+|.++=
T Consensus 353 GGKLI~~HG~aD~~I~--p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 353 GGKLILYHGWADPLIP--PQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENG 427 (474)
T ss_pred CCeEEEEecCCCCccC--CCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCC
Confidence 4689999999999999 999999999987652 1 36899999999987544 23446778888888763
Done!