Query 002195
Match_columns 954
No_of_seqs 426 out of 1931
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1246 ArgA N-acetylglutamate 99.2 2.9E-11 6.3E-16 120.8 6.5 104 818-925 38-143 (153)
2 KOG0956 PHD finger protein AF1 99.1 5.9E-11 1.3E-15 137.9 4.4 150 576-731 6-187 (900)
3 PRK07757 acetyltransferase; Pr 99.0 9E-10 1.9E-14 107.4 9.3 98 826-926 45-143 (152)
4 PRK10314 putative acyltransfer 99.0 1.4E-09 3.1E-14 108.6 9.8 116 779-907 15-135 (153)
5 PF13508 Acetyltransf_7: Acety 99.0 4.4E-09 9.6E-14 92.5 10.9 77 822-903 3-79 (79)
6 KOG1244 Predicted transcriptio 99.0 9.6E-11 2.1E-15 124.6 0.4 90 576-722 225-329 (336)
7 PF00583 Acetyltransf_1: Acety 98.9 7.1E-09 1.5E-13 90.3 9.7 74 828-902 2-83 (83)
8 KOG1512 PHD Zn-finger protein 98.9 3.6E-10 7.9E-15 120.8 1.0 89 576-722 259-361 (381)
9 PF13673 Acetyltransf_10: Acet 98.8 1.8E-08 3.9E-13 93.1 10.3 74 822-901 44-117 (117)
10 PTZ00330 acetyltransferase; Pr 98.7 8.8E-08 1.9E-12 92.3 10.5 83 823-906 53-141 (147)
11 KOG4323 Polycomb-like PHD Zn-f 98.7 1.2E-08 2.5E-13 117.2 5.0 195 584-793 97-301 (464)
12 KOG1244 Predicted transcriptio 98.7 3.8E-09 8.2E-14 112.7 0.4 78 544-621 244-332 (336)
13 PRK10146 aminoalkylphosphonic 98.6 9.1E-08 2E-12 91.8 8.7 80 825-905 50-137 (144)
14 PLN02706 glucosamine 6-phospha 98.6 1.7E-07 3.7E-12 91.3 10.3 82 823-905 54-143 (150)
15 PLN02825 amino-acid N-acetyltr 98.6 1.4E-07 3E-12 111.2 11.4 89 825-915 410-499 (515)
16 cd02169 Citrate_lyase_ligase C 98.6 1.2E-07 2.5E-12 105.0 9.5 74 826-905 10-83 (297)
17 PRK07922 N-acetylglutamate syn 98.6 1.6E-07 3.5E-12 95.1 9.7 80 825-907 48-128 (169)
18 COG5141 PHD zinc finger-contai 98.6 1.4E-08 3E-13 115.1 1.9 123 572-708 190-342 (669)
19 PF13527 Acetyltransf_9: Acety 98.6 3.2E-07 6.9E-12 86.6 10.8 111 781-904 10-127 (127)
20 PRK03624 putative acetyltransf 98.6 2.3E-07 5.1E-12 87.3 8.6 83 823-907 46-131 (140)
21 TIGR01890 N-Ac-Glu-synth amino 98.5 3.1E-07 6.7E-12 106.1 10.9 84 826-911 326-410 (429)
22 KOG1512 PHD Zn-finger protein 98.5 3.3E-08 7.2E-13 106.1 1.8 78 541-618 274-361 (381)
23 PRK12308 bifunctional arginino 98.5 4.8E-07 1E-11 109.0 10.1 89 825-916 506-595 (614)
24 TIGR01575 rimI ribosomal-prote 98.5 8.8E-07 1.9E-11 82.6 9.6 80 825-906 34-116 (131)
25 TIGR00124 cit_ly_ligase [citra 98.5 5.1E-07 1.1E-11 101.4 9.4 80 822-907 31-110 (332)
26 KOG0955 PHD finger protein BR1 98.4 9.3E-08 2E-12 118.8 3.6 126 572-705 216-366 (1051)
27 PRK10975 TDP-fucosamine acetyl 98.4 8.2E-07 1.8E-11 91.1 9.8 84 822-906 102-188 (194)
28 TIGR02382 wecD_rffC TDP-D-fuco 98.4 8.6E-07 1.9E-11 91.0 9.6 80 826-906 103-185 (191)
29 KOG4299 PHD Zn-finger protein 98.4 1.3E-07 2.8E-12 110.9 3.9 46 575-620 253-305 (613)
30 PRK05279 N-acetylglutamate syn 98.4 7.5E-07 1.6E-11 103.1 10.0 84 825-910 337-421 (441)
31 COG2153 ElaA Predicted acyltra 98.4 6.6E-07 1.4E-11 88.9 8.1 87 822-909 50-139 (155)
32 KOG0825 PHD Zn-finger protein 98.4 8E-08 1.7E-12 113.6 1.4 135 574-724 122-266 (1134)
33 PRK09491 rimI ribosomal-protei 98.4 2.3E-06 4.9E-11 83.2 10.5 84 821-906 39-125 (146)
34 TIGR03827 GNAT_ablB putative b 98.3 1.7E-06 3.7E-11 93.7 9.2 84 822-906 158-245 (266)
35 PF15446 zf-PHD-like: PHD/FYVE 98.3 4.1E-07 8.8E-12 92.1 3.9 124 577-703 1-143 (175)
36 KOG4299 PHD Zn-finger protein 98.3 4.9E-07 1.1E-11 106.2 4.5 50 665-723 255-304 (613)
37 KOG0383 Predicted helicase [Ge 98.3 3.1E-07 6.6E-12 110.6 2.5 156 592-789 1-163 (696)
38 KOG4443 Putative transcription 98.3 3.3E-07 7.1E-12 107.7 2.1 90 574-719 17-114 (694)
39 PRK10140 putative acetyltransf 98.3 4.9E-06 1.1E-10 81.2 9.9 85 822-908 51-143 (162)
40 PRK13688 hypothetical protein; 98.2 3.7E-06 8.1E-11 85.0 9.0 75 827-907 50-134 (156)
41 PRK09831 putative acyltransfer 98.2 3.2E-06 6.9E-11 82.8 8.1 73 825-908 56-128 (147)
42 PHA00673 acetyltransferase dom 98.2 8.6E-06 1.9E-10 82.5 10.5 83 822-905 55-145 (154)
43 KOG3396 Glucosamine-phosphate 98.2 4.5E-06 9.7E-11 82.3 7.4 84 822-906 53-144 (150)
44 KOG0954 PHD finger protein [Ge 98.1 8.5E-07 1.8E-11 105.0 2.3 141 573-725 269-440 (893)
45 TIGR03448 mycothiol_MshD mycot 98.1 1.8E-05 3.8E-10 85.8 10.7 81 823-906 47-128 (292)
46 KOG3139 N-acetyltransferase [G 98.1 1.9E-05 4.2E-10 80.0 9.8 73 833-906 68-146 (165)
47 TIGR03448 mycothiol_MshD mycot 98.1 1.5E-05 3.2E-10 86.3 9.7 85 821-906 199-288 (292)
48 PF13420 Acetyltransf_4: Acety 98.0 3.5E-05 7.7E-10 75.0 10.5 76 829-906 58-139 (155)
49 TIGR02406 ectoine_EctA L-2,4-d 98.0 2.1E-05 4.6E-10 78.6 8.9 83 823-906 40-128 (157)
50 COG0456 RimI Acetyltransferase 98.0 1.8E-05 3.9E-10 78.4 7.9 76 832-908 72-156 (177)
51 TIGR03103 trio_acet_GNAT GNAT- 98.0 2.7E-05 5.8E-10 93.0 10.0 85 821-906 122-217 (547)
52 cd04301 NAT_SF N-Acyltransfera 97.9 3.8E-05 8.3E-10 61.1 7.7 61 825-885 2-64 (65)
53 PF08445 FR47: FR47-like prote 97.9 4.9E-05 1.1E-09 69.4 8.7 75 830-906 6-82 (86)
54 PHA01807 hypothetical protein 97.9 3.1E-05 6.7E-10 78.3 7.9 74 824-897 55-135 (153)
55 KOG0383 Predicted helicase [Ge 97.9 6.4E-06 1.4E-10 99.5 3.4 49 572-620 44-94 (696)
56 PRK01346 hypothetical protein; 97.9 4.7E-05 1E-09 87.0 9.8 80 824-906 49-136 (411)
57 PRK10562 putative acetyltransf 97.8 6.6E-05 1.4E-09 73.1 8.5 76 825-907 51-126 (145)
58 KOG4442 Clathrin coat binding 97.8 9.2E-06 2E-10 96.5 2.7 58 490-549 195-260 (729)
59 PRK15130 spermidine N1-acetylt 97.8 0.0001 2.3E-09 74.6 9.9 81 824-906 59-145 (186)
60 PRK10514 putative acetyltransf 97.8 9.1E-05 2E-09 71.5 8.7 73 828-908 56-128 (145)
61 PF13523 Acetyltransf_8: Acety 97.8 0.00017 3.7E-09 70.5 10.3 87 820-907 46-142 (152)
62 PF00628 PHD: PHD-finger; Int 97.7 4.7E-06 1E-10 68.5 -0.7 48 666-722 2-49 (51)
63 COG3393 Predicted acetyltransf 97.7 8.4E-05 1.8E-09 80.6 8.4 84 822-906 177-262 (268)
64 KOG4443 Putative transcription 97.7 1E-05 2.2E-10 95.6 1.4 158 545-722 34-200 (694)
65 smart00249 PHD PHD zinc finger 97.7 2.8E-05 6.1E-10 61.2 3.4 44 666-718 2-45 (47)
66 TIGR01686 FkbH FkbH-like domai 97.7 0.00013 2.7E-09 81.5 9.7 82 821-904 230-319 (320)
67 KOG1473 Nucleosome remodeling 97.7 7.5E-06 1.6E-10 100.6 -0.1 129 572-725 341-480 (1414)
68 TIGR01211 ELP3 histone acetylt 97.7 0.00011 2.3E-09 87.4 9.3 77 829-906 421-516 (522)
69 TIGR03585 PseH pseudaminic aci 97.7 0.00027 5.8E-09 68.8 10.2 79 826-907 55-139 (156)
70 PF13718 GNAT_acetyltr_2: GNAT 97.7 0.00028 6.2E-09 74.2 10.7 88 820-908 25-178 (196)
71 PF00628 PHD: PHD-finger; Int 97.6 1.5E-05 3.3E-10 65.4 0.5 43 577-619 1-50 (51)
72 smart00249 PHD PHD zinc finger 97.5 5.5E-05 1.2E-09 59.5 2.6 41 577-617 1-47 (47)
73 COG3153 Predicted acetyltransf 97.5 0.00027 5.9E-09 72.9 8.3 139 779-937 12-155 (171)
74 PRK10809 ribosomal-protein-S5- 97.5 0.00043 9.2E-09 70.7 9.6 83 822-906 77-166 (194)
75 PF13302 Acetyltransf_3: Acety 97.4 0.0015 3.3E-08 62.2 11.1 80 821-902 55-142 (142)
76 KOG3397 Acetyltransferases [Ge 97.4 0.00034 7.5E-09 71.7 6.8 77 830-908 65-143 (225)
77 PRK10151 ribosomal-protein-L7/ 97.4 0.0012 2.6E-08 66.5 10.3 80 826-907 71-156 (179)
78 KOG0825 PHD Zn-finger protein 97.2 0.00014 3.1E-09 86.9 1.8 44 576-619 216-265 (1134)
79 COG5034 TNG2 Chromatin remodel 97.0 0.00029 6.2E-09 75.8 2.1 47 662-723 220-269 (271)
80 KOG0957 PHD finger protein [Ge 97.0 0.00033 7.2E-09 80.7 2.1 124 576-704 120-277 (707)
81 KOG1973 Chromatin remodeling p 96.9 0.00033 7.2E-09 77.1 1.5 39 581-619 226-267 (274)
82 COG5034 TNG2 Chromatin remodel 96.9 0.00039 8.5E-09 74.8 1.7 43 576-619 222-269 (271)
83 COG1247 Sortase and related ac 96.7 0.0068 1.5E-07 62.6 9.3 115 814-934 44-166 (169)
84 KOG1973 Chromatin remodeling p 96.7 0.00058 1.2E-08 75.3 1.6 35 682-723 230-267 (274)
85 KOG3216 Diamine acetyltransfer 96.6 0.023 5E-07 57.7 11.4 124 775-906 14-146 (163)
86 KOG0957 PHD finger protein [Ge 96.5 0.00092 2E-08 77.2 1.4 59 663-732 544-608 (707)
87 PF12746 GNAT_acetyltran: GNAT 96.1 0.03 6.6E-07 61.7 10.1 77 828-906 171-247 (265)
88 PF08444 Gly_acyl_tr_C: Aralky 96.1 0.011 2.4E-07 55.1 5.5 74 827-905 4-79 (89)
89 PF14542 Acetyltransf_CG: GCN5 95.9 0.034 7.4E-07 50.3 8.0 57 826-883 3-59 (78)
90 PF12568 DUF3749: Acetyltransf 95.9 0.058 1.3E-06 53.5 10.0 80 822-906 40-125 (128)
91 KOG4144 Arylalkylamine N-acety 95.9 0.006 1.3E-07 61.9 3.2 60 846-906 101-161 (190)
92 COG0454 WecD Histone acetyltra 95.8 0.011 2.3E-07 49.8 4.1 44 852-901 87-130 (156)
93 PF13831 PHD_2: PHD-finger; PD 95.8 0.0015 3.2E-08 51.1 -1.2 34 585-618 2-36 (36)
94 COG3053 CitC Citrate lyase syn 95.8 0.031 6.7E-07 62.0 8.2 80 822-907 37-116 (352)
95 KOG0955 PHD finger protein BR1 95.6 0.0077 1.7E-07 76.3 3.3 55 662-727 218-272 (1051)
96 COG2388 Predicted acetyltransf 95.6 0.028 6.1E-07 53.5 6.3 61 820-882 15-75 (99)
97 COG1444 Predicted P-loop ATPas 95.6 0.013 2.9E-07 72.1 5.1 58 847-906 532-591 (758)
98 cd04718 BAH_plant_2 BAH, or Br 95.5 0.0064 1.4E-07 61.4 1.8 26 693-723 1-26 (148)
99 cd04718 BAH_plant_2 BAH, or Br 95.5 0.0078 1.7E-07 60.8 2.1 25 596-620 1-27 (148)
100 COG1670 RimL Acetyltransferase 95.4 0.088 1.9E-06 51.7 9.5 87 821-909 65-161 (187)
101 KOG0956 PHD finger protein AF1 95.4 0.008 1.7E-07 72.0 2.2 51 662-723 4-56 (900)
102 KOG2488 Acetyltransferase (GNA 95.4 0.048 1E-06 57.2 7.5 84 822-906 93-182 (202)
103 KOG1245 Chromatin remodeling c 95.2 0.0059 1.3E-07 79.8 0.3 55 661-726 1106-1160(1404)
104 KOG1083 Putative transcription 94.5 0.025 5.4E-07 70.6 3.3 44 490-535 1252-1296(1306)
105 KOG3138 Predicted N-acetyltran 94.3 0.038 8.3E-07 58.0 3.6 62 846-908 89-154 (187)
106 KOG1245 Chromatin remodeling c 93.4 0.02 4.4E-07 75.1 -0.4 49 572-620 1105-1158(1404)
107 KOG3235 Subunit of the major N 93.3 0.22 4.7E-06 51.2 6.8 81 826-906 45-135 (193)
108 COG5141 PHD zinc finger-contai 92.8 0.04 8.7E-07 64.1 0.9 47 664-721 194-240 (669)
109 KOG3234 Acetyltransferase, (GN 92.8 0.14 3E-06 52.5 4.5 59 845-904 68-129 (173)
110 PF13480 Acetyltransf_6: Acety 92.6 0.83 1.8E-05 43.3 9.4 66 822-888 71-136 (142)
111 TIGR03694 exosort_acyl putativ 92.1 1 2.3E-05 48.9 10.6 124 778-906 16-200 (241)
112 COG4552 Eis Predicted acetyltr 92.1 0.17 3.7E-06 57.5 4.6 84 816-906 35-127 (389)
113 COG1243 ELP3 Histone acetyltra 92.0 0.12 2.7E-06 60.4 3.5 51 855-906 459-509 (515)
114 KOG0954 PHD finger protein [Ge 91.8 0.08 1.7E-06 64.4 1.7 49 664-723 272-320 (893)
115 smart00258 SAND SAND domain. 91.7 0.14 2.9E-06 46.4 2.7 50 260-311 19-69 (73)
116 PF06852 DUF1248: Protein of u 91.3 1.1 2.3E-05 47.2 9.1 83 822-906 47-137 (181)
117 KOG1080 Histone H3 (Lys4) meth 91.3 0.11 2.4E-06 66.2 2.3 59 488-548 939-1004(1005)
118 PF13831 PHD_2: PHD-finger; PD 90.6 0.045 9.8E-07 42.9 -1.2 33 682-721 2-35 (36)
119 KOG4323 Polycomb-like PHD Zn-f 90.1 0.095 2.1E-06 61.5 0.2 45 576-620 169-224 (464)
120 PF01342 SAND: SAND domain; I 89.9 0.11 2.4E-06 47.8 0.5 55 255-311 18-78 (82)
121 PF00765 Autoind_synth: Autoin 87.5 3.3 7.2E-05 43.4 9.5 118 778-903 7-152 (182)
122 smart00317 SET SET (Su(var)3-9 87.2 0.34 7.3E-06 44.5 1.8 41 490-532 75-116 (116)
123 COG3981 Predicted acetyltransf 86.7 1.3 2.7E-05 46.3 5.7 68 821-890 69-141 (174)
124 PRK13834 putative autoinducer 86.3 3.8 8.3E-05 43.7 9.3 119 778-903 15-162 (207)
125 PF07897 DUF1675: Protein of u 85.9 1.1 2.5E-05 50.0 5.3 71 223-297 206-283 (284)
126 KOG1081 Transcription factor N 85.2 0.38 8.2E-06 57.1 1.3 45 489-535 372-417 (463)
127 cd04264 DUF619-NAGS DUF619 dom 84.1 2.3 5E-05 40.6 5.7 48 828-875 14-63 (99)
128 PF13832 zf-HC5HC2H_2: PHD-zin 76.2 1.1 2.4E-05 42.5 0.8 33 664-704 56-90 (110)
129 TIGR03019 pepcterm_femAB FemAB 75.6 8.4 0.00018 43.3 7.7 80 825-905 198-280 (330)
130 cd04265 DUF619-NAGS-U DUF619 d 75.1 5.9 0.00013 37.9 5.3 48 828-875 15-63 (99)
131 KOG1428 Inhibitor of type V ad 74.6 1.7 3.7E-05 56.5 2.0 52 570-621 3481-3543(3738)
132 PF02474 NodA: Nodulation prot 74.5 4.5 9.8E-05 42.4 4.7 51 846-897 85-135 (196)
133 KOG1081 Transcription factor N 73.0 2.8 6.1E-05 50.0 3.3 61 558-619 72-132 (463)
134 PF12861 zf-Apc11: Anaphase-pr 72.6 1.3 2.8E-05 41.3 0.3 30 592-621 51-81 (85)
135 PF13771 zf-HC5HC2H: PHD-like 72.1 1.6 3.6E-05 39.7 0.8 31 665-703 38-70 (90)
136 PF07227 DUF1423: Protein of u 68.2 5.7 0.00012 46.9 4.2 55 666-724 131-192 (446)
137 KOG4628 Predicted E3 ubiquitin 66.6 2.9 6.4E-05 48.0 1.5 43 576-621 230-277 (348)
138 PF11793 FANCL_C: FANCL C-term 64.7 4 8.6E-05 36.5 1.7 46 576-621 3-65 (70)
139 PF13639 zf-RING_2: Ring finge 64.7 0.53 1.1E-05 37.6 -3.5 39 576-618 1-44 (44)
140 PF12678 zf-rbx1: RING-H2 zinc 63.7 0.95 2.1E-05 40.6 -2.4 26 591-618 48-73 (73)
141 PF01853 MOZ_SAS: MOZ/SAS fami 63.2 15 0.00033 39.0 5.9 84 779-877 26-111 (188)
142 COG3818 Predicted acetyltransf 62.2 20 0.00044 36.3 6.2 60 851-910 89-152 (167)
143 PF14446 Prok-RING_1: Prokaryo 59.9 6.2 0.00013 34.0 1.9 35 664-703 6-40 (54)
144 COG5628 Predicted acetyltransf 59.2 30 0.00064 34.7 6.6 82 824-910 39-128 (143)
145 KOG1082 Histone H3 (Lys9) meth 57.9 5 0.00011 46.3 1.4 47 488-534 272-321 (364)
146 PF14446 Prok-RING_1: Prokaryo 57.4 5.2 0.00011 34.5 1.0 28 576-603 6-37 (54)
147 PF13444 Acetyltransf_5: Acety 57.2 20 0.00043 33.6 5.1 25 844-868 76-100 (101)
148 PF01233 NMT: Myristoyl-CoA:pr 56.2 80 0.0017 33.0 9.5 110 762-882 23-146 (162)
149 KOG4135 Predicted phosphogluco 53.9 27 0.00058 36.2 5.5 58 846-904 107-168 (185)
150 KOG1473 Nucleosome remodeling 53.8 7.2 0.00016 50.3 1.9 45 664-722 345-389 (1414)
151 PF13880 Acetyltransf_13: ESCO 52.8 10 0.00022 34.3 2.2 27 849-875 8-34 (70)
152 KOG2036 Predicted P-loop ATPas 52.5 14 0.0003 46.0 3.8 28 847-874 615-642 (1011)
153 KOG2535 RNA polymerase II elon 52.0 17 0.00038 41.8 4.3 51 856-907 497-548 (554)
154 PLN03238 probable histone acet 50.8 22 0.00048 40.1 4.8 33 847-879 156-188 (290)
155 PRK00756 acyltransferase NodA; 49.8 25 0.00054 36.9 4.6 39 845-884 84-122 (196)
156 PF15446 zf-PHD-like: PHD/FYVE 48.4 10 0.00022 39.7 1.6 34 666-702 2-35 (175)
157 PHA02929 N1R/p28-like protein; 47.0 6.3 0.00014 43.3 -0.0 47 573-621 172-226 (238)
158 PF13901 DUF4206: Domain of un 46.6 23 0.00049 37.8 4.1 70 292-365 102-197 (202)
159 COG0143 MetG Methionyl-tRNA sy 45.5 29 0.00063 42.6 5.2 94 664-767 143-243 (558)
160 KOG1493 Anaphase-promoting com 44.9 1.9 4.1E-05 39.5 -3.6 53 568-621 13-80 (84)
161 cd00162 RING RING-finger (Real 44.7 7 0.00015 29.7 -0.1 40 578-619 2-43 (45)
162 PRK14852 hypothetical protein; 44.3 63 0.0014 42.2 8.0 64 844-907 119-182 (989)
163 KOG1701 Focal adhesion adaptor 44.3 9.8 0.00021 44.7 0.9 25 576-602 335-361 (468)
164 KOG2779 N-myristoyl transferas 43.9 61 0.0013 37.7 7.0 134 762-906 80-241 (421)
165 PF12261 T_hemolysin: Thermost 42.9 64 0.0014 34.2 6.5 55 844-903 85-139 (179)
166 PF04377 ATE_C: Arginine-tRNA- 41.7 1E+02 0.0022 30.9 7.4 57 827-884 44-100 (128)
167 PF00856 SET: SET domain; Int 40.9 8.2 0.00018 36.8 -0.3 42 489-532 119-161 (162)
168 PTZ00064 histone acetyltransfe 40.9 31 0.00068 41.6 4.3 28 848-875 386-413 (552)
169 PF04958 AstA: Arginine N-succ 40.1 41 0.00088 39.0 5.0 48 822-869 59-144 (342)
170 PLN03239 histone acetyltransfe 39.7 38 0.00083 39.2 4.7 30 848-877 215-244 (351)
171 PF11793 FANCL_C: FANCL C-term 38.3 16 0.00036 32.6 1.2 34 665-701 4-39 (70)
172 KOG2747 Histone acetyltransfer 37.7 34 0.00074 40.2 3.9 74 779-870 208-284 (396)
173 KOG1298 Squalene monooxygenase 37.1 22 0.00047 41.9 2.2 182 21-240 97-309 (509)
174 COG5574 PEX10 RING-finger-cont 35.8 9.6 0.00021 42.3 -0.8 50 573-623 213-263 (271)
175 KOG0317 Predicted E3 ubiquitin 35.8 13 0.00028 41.8 0.2 51 572-624 236-286 (293)
176 TIGR03244 arg_catab_AstA argin 35.5 60 0.0013 37.6 5.4 49 821-869 54-140 (336)
177 KOG1079 Transcriptional repres 35.0 20 0.00043 44.4 1.5 42 490-533 667-709 (739)
178 PLN00104 MYST -like histone ac 34.8 39 0.00085 40.4 3.9 26 848-873 308-333 (450)
179 TIGR03245 arg_AOST_alph argini 34.4 61 0.0013 37.5 5.2 49 821-869 55-141 (336)
180 PF13832 zf-HC5HC2H_2: PHD-zin 33.8 18 0.0004 34.3 0.8 29 574-602 54-85 (110)
181 TIGR03243 arg_catab_AOST argin 33.8 64 0.0014 37.3 5.2 49 821-869 54-140 (335)
182 KOG1734 Predicted RING-contain 33.7 12 0.00026 41.7 -0.5 49 572-621 221-280 (328)
183 PRK10456 arginine succinyltran 33.2 62 0.0014 37.5 5.0 49 821-869 56-142 (344)
184 COG3916 LasI N-acyl-L-homoseri 32.2 1.9E+02 0.0042 31.4 8.2 81 820-901 51-158 (209)
185 KOG1246 DNA-binding protein ju 30.9 32 0.0007 44.5 2.6 46 575-620 155-204 (904)
186 smart00184 RING Ring finger. E 30.8 9.1 0.0002 28.0 -1.4 38 578-617 1-39 (39)
187 KOG2752 Uncharacterized conser 30.2 28 0.0006 39.7 1.6 23 680-702 144-167 (345)
188 PRK14559 putative protein seri 29.1 42 0.00091 41.9 3.1 38 573-620 13-50 (645)
189 TIGR02174 CXXU_selWTH selT/sel 28.8 38 0.00082 30.3 2.0 29 40-69 39-67 (72)
190 KOG0804 Cytoplasmic Zn-finger 28.8 19 0.00041 42.7 0.1 41 575-619 175-219 (493)
191 KOG0827 Predicted E3 ubiquitin 28.6 11 0.00024 43.9 -1.9 42 576-619 5-53 (465)
192 COG5194 APC11 Component of SCF 28.1 11 0.00025 34.9 -1.5 28 592-621 53-80 (88)
193 KOG1632 Uncharacterized PHD Zn 26.8 35 0.00076 39.5 1.7 44 683-730 74-119 (345)
194 PF13771 zf-HC5HC2H: PHD-like 26.7 27 0.00058 31.8 0.6 31 573-603 34-67 (90)
195 PRK01305 arginyl-tRNA-protein 26.3 3E+02 0.0065 30.5 8.6 112 762-884 94-205 (240)
196 PF10497 zf-4CXXC_R1: Zinc-fin 26.2 30 0.00065 33.5 0.9 31 589-619 32-69 (105)
197 KOG0823 Predicted E3 ubiquitin 25.5 26 0.00057 38.3 0.4 54 572-625 44-98 (230)
198 COG4357 Zinc finger domain con 25.0 30 0.00066 33.2 0.7 57 546-602 26-95 (105)
199 KOG1246 DNA-binding protein ju 25.0 50 0.0011 42.8 2.8 48 665-724 157-204 (904)
200 KOG2589 Histone tail methylase 24.7 58 0.0013 38.0 2.9 55 490-553 198-252 (453)
201 PF10262 Rdx: Rdx family; Int 24.6 21 0.00046 32.0 -0.4 27 41-68 42-68 (76)
202 PLN03208 E3 ubiquitin-protein 23.2 25 0.00053 37.7 -0.3 49 574-622 17-79 (193)
203 PF07649 C1_3: C1-like domain; 23.2 28 0.00061 26.0 0.1 28 666-699 3-30 (30)
204 COG5027 SAS2 Histone acetyltra 22.7 45 0.00098 38.6 1.5 23 847-869 263-285 (395)
205 KOG3612 PHD Zn-finger protein 22.4 55 0.0012 39.8 2.2 47 573-619 58-107 (588)
206 COG5243 HRD1 HRD ubiquitin lig 22.1 18 0.00039 41.9 -1.7 46 573-620 285-343 (491)
207 KOG1044 Actin-binding LIM Zn-f 21.2 92 0.002 38.3 3.7 57 852-908 429-489 (670)
208 PHA02926 zinc finger-like prot 21.2 39 0.00084 37.0 0.6 49 573-621 168-229 (242)
209 KOG1141 Predicted histone meth 21.1 56 0.0012 41.5 2.0 45 489-533 1190-1237(1262)
210 KOG1829 Uncharacterized conser 20.7 38 0.00081 41.7 0.5 37 679-727 526-562 (580)
211 PF13901 DUF4206: Domain of un 20.7 76 0.0016 33.9 2.7 35 666-701 155-189 (202)
No 1
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.18 E-value=2.9e-11 Score=120.82 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=88.8
Q ss_pred eEecEEEEEEeeCCeEEEEEEEE-EeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002195 818 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 896 (954)
Q Consensus 818 df~GfY~~VL~~~~~vVsaA~lr-i~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~ 896 (954)
++..|+.+ +.+|.+||||.++ +.+.+++||.-|||+|+|||+|+|..|++.|+..++.+|++++++.+. . .+-|.
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 34445554 8899999999999 789999999999999999999999999999999999999999999985 2 44566
Q ss_pred hccCcEEcChhHHH-HHHHhcCceeeecCc
Q 002195 897 DKFGFKKIDPELLS-IYRKRCSQLVTFKGT 925 (954)
Q Consensus 897 ~kfGF~~i~~~el~-~~~~~c~~ll~F~gt 925 (954)
.++||+.++..+++ .+|..|...-.|+.+
T Consensus 114 ~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~ 143 (153)
T COG1246 114 AERGFTRVDKDELPEEVWSSYNFCERRSKC 143 (153)
T ss_pred HHcCCeECccccCCHHHHHHHHhhhhhhhH
Confidence 66999999998888 788886665566655
No 2
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.08 E-value=5.9e-11 Score=137.94 Aligned_cols=150 Identities=25% Similarity=0.537 Sum_probs=97.9
Q ss_pred cccccccccC-----CeeccCC--CCCccCcccCcCCCCCCCCccccccccc---------c--ccccccccccccccc-
Q 002195 576 DLCTICADGG-----NLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM---------F--ERKRFLQHDANAVEA- 636 (954)
Q Consensus 576 d~C~vC~dgG-----~Ll~CD~--CprafH~~CL~l~~vP~g~W~C~~C~~~---------~--~~e~~v~~n~na~a~- 636 (954)
.-|.||.|.. -|++||+ |..+.|+.|+++-++|.|.|||+.|... + ++++++++..+.-.+
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 4588998753 3999997 9999999999999999999999999542 1 234555544442111
Q ss_pred ---------ccccccCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCC--CcCcccCccccCcccCC
Q 002195 637 ---------GRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMA 705 (954)
Q Consensus 637 ---------g~~~gvd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~~~~~ 705 (954)
-++..|..+|.|.-. .+.+ +.-...||||.+-+- ......+..|.|+ .|.++|||.|.+..++.
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq---~VP~-dRfnKtCYIC~E~Gr-pnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLL 160 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQ---DVPH-DRFNKTCYICNEEGR-PNKAAKGACMTCNKSGCKQAFHVTCAQRAGLL 160 (900)
T ss_pred EEEEeeccceeecccccccceeec---cCch-hhhcceeeeecccCC-ccccccccceecccccchhhhhhhHhhhhccc
Confidence 133334444443210 1111 111234999997652 2223456789998 79999999999987764
Q ss_pred cccCC--CCCcceecCCchhhHHHHHHH
Q 002195 706 DLREL--PKGKWFCCMDCSRINSVLQNL 731 (954)
Q Consensus 706 ~Lkel--P~g~WfC~~~C~~i~~~LqkL 731 (954)
.-++. -+---|| ..|+..+.+|.+-
T Consensus 161 CEE~gn~~dNVKYC-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 161 CEEEGNISDNVKYC-GYCKYHFSKLKKS 187 (900)
T ss_pred eeccccccccceec-hhHHHHHHHhhcC
Confidence 43331 1122478 7999999988764
No 3
>PRK07757 acetyltransferase; Provisional
Probab=99.02 E-value=9e-10 Score=107.43 Aligned_cols=98 Identities=19% Similarity=0.302 Sum_probs=87.7
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcC
Q 002195 826 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 905 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~ 905 (954)
++..++++||.+.+.+.+.+.+++-.++|.++|||+|+|+.||..+++.+...|+.++++-.. +..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHH-CCCEEcc
Confidence 446789999999999989899999999999999999999999999999999999999876443 5689998 9999999
Q ss_pred hhHHH-HHHHhcCceeeecCcc
Q 002195 906 PELLS-IYRKRCSQLVTFKGTS 926 (954)
Q Consensus 906 ~~el~-~~~~~c~~ll~F~gt~ 926 (954)
..+++ ++|..|.-+..|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ 143 (152)
T PRK07757 122 KEALPQKVWADCIKCPKFPNCD 143 (152)
T ss_pred cccCChhHHhcCccCCCCCCcc
Confidence 96665 8999999999999993
No 4
>PRK10314 putative acyltransferase; Provisional
Probab=99.00 E-value=1.4e-09 Score=108.56 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceE--ecEEEEEEeeCCeEEEEEEEEEeCC--eeEEeeeeEe
Q 002195 779 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF--GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVAT 854 (954)
Q Consensus 779 skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df--~GfY~~VL~~~~~vVsaA~lri~g~--~vAEiplVAT 854 (954)
..+..|+.+=++-|..- -+.+ |. ++.+.|. ..++. ++..++++||+|+++..+. ..++|..|||
T Consensus 15 ~~~~~~~~lR~~VF~~e----q~~~------~~-e~D~~d~~~~~~h~-~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V 82 (153)
T PRK10314 15 SQLYALLQLRCAVFVVE----QNCP------YQ-DIDGDDLTGDNRHI-LGWKNDELVAYARILKSDDDLEPVVIGRVIV 82 (153)
T ss_pred HHHHHHHHHHHHHhhhh----cCCC------cc-ccCCCCCCCCcEEE-EEEECCEEEEEEEEecCCCCCCCEEEEEEEE
Confidence 34678888878877422 1111 11 2222232 12333 4467899999999987543 3689999999
Q ss_pred ecCcccCChhHHHHHHHHHHhhhc-CccEEEecchhhhHHHHHhccCcEEcChh
Q 002195 855 SKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDPE 907 (954)
Q Consensus 855 ~~~yRgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 907 (954)
+++|||+|+|++||+.+++.++.. +...++|.|...|++||++ |||..+++.
T Consensus 83 ~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~~ 135 (153)
T PRK10314 83 SEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTEV 135 (153)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCCc
Confidence 999999999999999999988775 7889999999999999999 999999873
No 5
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.98 E-value=4.4e-09 Score=92.50 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=67.0
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 901 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 901 (954)
-+.++++.++++||++.+...++ .+.|..+||+++|||||+|+.||..+++.+.. ..+++.+.+.+.+||++ +||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTE
T ss_pred cEEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcC
Confidence 35677899999999999977665 89999999999999999999999999888854 56778888999999999 999
Q ss_pred EE
Q 002195 902 KK 903 (954)
Q Consensus 902 ~~ 903 (954)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.97 E-value=9.6e-11 Score=124.57 Aligned_cols=90 Identities=30% Similarity=0.875 Sum_probs=74.4
Q ss_pred ccccccccc----------CCeeccCCCCCccCcccCcCC-----CCCCCCccccccccccccccccccccccccccccc
Q 002195 576 DLCTICADG----------GNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 640 (954)
Q Consensus 576 d~C~vC~dg----------G~Ll~CD~CprafH~~CL~l~-----~vP~g~W~C~~C~~~~~~e~~v~~n~na~a~g~~~ 640 (954)
.+|..|..+ .+|+-|..|+++-|..||.++ .+-...|+|..|+.
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~--------------------- 283 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY--------------------- 283 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce---------------------
Confidence 567777633 469999999999999999643 45567899999984
Q ss_pred ccCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCC
Q 002195 641 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMD 720 (954)
Q Consensus 641 gvd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~ 720 (954)
|.+|+.++ ++++||+||-|++.||++||.| +|.+.|+|.|-| .-
T Consensus 284 -------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegswsc-~K 327 (336)
T KOG1244|consen 284 -------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HL 327 (336)
T ss_pred -------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HH
Confidence 88999765 5679999999999999999998 567789999999 55
Q ss_pred ch
Q 002195 721 CS 722 (954)
Q Consensus 721 C~ 722 (954)
|-
T Consensus 328 OG 329 (336)
T KOG1244|consen 328 CL 329 (336)
T ss_pred HH
Confidence 63
No 7
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.91 E-value=7.1e-09 Score=90.35 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.8
Q ss_pred eeCCeEEEEEEEEEeCC-----eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh---hHHHHHhcc
Q 002195 828 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 899 (954)
Q Consensus 828 ~~~~~vVsaA~lri~g~-----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e---A~~~w~~kf 899 (954)
+.+|++||++.+++... ..+.|..++|+++|||+|+|+.||+.+++.++..|+..|.+....+ +..||++ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 67999999999999886 5999999999999999999999999999999999999998877655 5589998 9
Q ss_pred CcE
Q 002195 900 GFK 902 (954)
Q Consensus 900 GF~ 902 (954)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 8
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.89 E-value=3.6e-10 Score=120.81 Aligned_cols=89 Identities=29% Similarity=0.684 Sum_probs=72.3
Q ss_pred ccccccccc---------CCeeccCCCCCccCcccCcCC-----CCCCCCcccccccccccccccccccccccccccccc
Q 002195 576 DLCTICADG---------GNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSG 641 (954)
Q Consensus 576 d~C~vC~dg---------G~Ll~CD~CprafH~~CL~l~-----~vP~g~W~C~~C~~~~~~e~~v~~n~na~a~g~~~g 641 (954)
..|.+|.++ ..+++|..|..++|+.|+++. .+-...|.|..|+-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l---------------------- 316 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL---------------------- 316 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh----------------------
Confidence 356667655 349999999999999999742 23347899999972
Q ss_pred cCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCc
Q 002195 642 VDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 721 (954)
Q Consensus 642 vd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C 721 (954)
|.||++.. .+..+++||.|++.||..|+ +|..+|.|.|.|-..|
T Consensus 317 ------------------------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 317 ------------------------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRC 360 (381)
T ss_pred ------------------------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHH
Confidence 88999764 45689999999999999999 6889999999996667
Q ss_pred h
Q 002195 722 S 722 (954)
Q Consensus 722 ~ 722 (954)
.
T Consensus 361 ~ 361 (381)
T KOG1512|consen 361 R 361 (381)
T ss_pred H
Confidence 4
No 9
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.84 E-value=1.8e-08 Score=93.14 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=64.8
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 901 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 901 (954)
...+|++.+|++||.+.++ .-++|..+.|+++|||+|+|++||..+++.++. |++.+.+.+...|.+||++ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 4566778999999999986 235599999999999999999999999999988 9999999999999999999 998
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.70 E-value=8.8e-08 Score=92.28 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.2
Q ss_pred EEEEEeeCCeEEEEEEEEEeC------CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002195 823 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 896 (954)
Q Consensus 823 Y~~VL~~~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~ 896 (954)
+.++...+|++||.+.+.... ..+++|-.+.|+++|||+|+|+.||..+++.++..|+.++++.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 344556789999999886532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCh
Q 002195 897 DKFGFKKIDP 906 (954)
Q Consensus 897 ~kfGF~~i~~ 906 (954)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998774
No 11
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.70 E-value=1.2e-08 Score=117.16 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=124.1
Q ss_pred cCCeeccCCCCCccCcccCcCCCCCCCCcccccccccccccccccccccccccccc--cccCccccchhhhhhhhccccc
Q 002195 584 GGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRV--SGVDSVEQITKRCIRIVKNLEA 661 (954)
Q Consensus 584 gG~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~~~~e~~v~~n~na~a~g~~--~gvd~ieqi~kRc~R~vkd~e~ 661 (954)
+.++..|+.|.++||+.|.-......+.|.+..|.........++......+. .. .+....+-. ... ..
T Consensus 97 ~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~-~~l~y~~~~l~wD----~~~----~~ 167 (464)
T KOG4323|consen 97 ENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLAR-PSLPYPEASLDWD----SGH----KV 167 (464)
T ss_pred chhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccccccccccc-ccccCcccccccC----ccc----cc
Confidence 45688999999999999986544445779898887653211111110000000 00 000000000 000 00
Q ss_pred cCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchhhHHHHHHHhhhccccCch
Q 002195 662 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNLLVQEAEKLPE 741 (954)
Q Consensus 662 e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~i~~~LqkLla~g~e~lp~ 741 (954)
...|.+|....+. ..+.||+|+.|..|||..|.++....-+-.-|...||| ..|..-...+..+-.+|++.++.
T Consensus 168 -n~qc~vC~~g~~~----~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~r~t~~~~dv~~l 241 (464)
T KOG4323|consen 168 -NLQCSVCYCGGPG----AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVPRLTLRWADVLHL 241 (464)
T ss_pred -cceeeeeecCCcC----ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhccccccccccccch
Confidence 1229999865422 23489999999999999999886433344447789999 79999999999888899998876
Q ss_pred hHHH--Hhh--hhhcCcccccccccceeeEcC-CCCCC---hhhHHHHHHHHHHhhhcCC
Q 002195 742 FHLN--AIK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHDCFD 793 (954)
Q Consensus 742 sll~--~Ik--k~~e~gle~~~~~~ikW~lLs-gk~~s---~e~~skLa~AL~If~EcFd 793 (954)
.+.+ .+. +++..-++.....+-.|..|. |...+ .+..+.+..|++-....|.
T Consensus 242 al~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~~f~ 301 (464)
T KOG4323|consen 242 ALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKSRFV 301 (464)
T ss_pred hhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhccccccc
Confidence 6633 333 666665566666777888775 55444 4567788888888887664
No 12
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.68 E-value=3.8e-09 Score=112.66 Aligned_cols=78 Identities=29% Similarity=0.694 Sum_probs=66.6
Q ss_pred CCCccccCCCCccCCcccccccC-----CCCCccccc-cccccccc---cCCeeccCCCCCccCcccCc--CCCCCCCCc
Q 002195 544 GLGIICHCCNSEVSPSQFEAHAG-----RQYPGKDND-DLCTICAD---GGNLLPCDGCPRAFHKECAS--LSSIPQGDW 612 (954)
Q Consensus 544 ~~GI~C~cC~~~vsPs~FE~hag-----~k~~~~~nd-d~C~vC~d---gG~Ll~CD~CprafH~~CL~--l~~vP~g~W 612 (954)
...+-|+.|++.-|||+....+. +.|.|++-+ ..|.+|+. .++|++||.|+++||++||. +.+.|+|.|
T Consensus 244 eelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegsw 323 (336)
T KOG1244|consen 244 EELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSW 323 (336)
T ss_pred hhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCch
Confidence 46799999999999998776654 678898877 88999994 36799999999999999996 668899999
Q ss_pred ccccccccc
Q 002195 613 YCKYCQNMF 621 (954)
Q Consensus 613 ~C~~C~~~~ 621 (954)
.|..|...+
T Consensus 324 sc~KOG~~~ 332 (336)
T KOG1244|consen 324 SCHLCLEEL 332 (336)
T ss_pred hHHHHHHHH
Confidence 999997644
No 13
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.64 E-value=9.1e-08 Score=91.83 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=68.7
Q ss_pred EEEeeCCeEEEEEEEEEeC-----CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHH
Q 002195 825 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 896 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g-----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~ 896 (954)
+|++.++++||.+.++... ...++|..++|+++|||||+|+.||..+++.++..|...+.|.+. ..|..||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567889999999987642 235789999999999999999999999999999999999988765 47999999
Q ss_pred hccCcEEcC
Q 002195 897 DKFGFKKID 905 (954)
Q Consensus 897 ~kfGF~~i~ 905 (954)
+ +||....
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 14
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.63 E-value=1.7e-07 Score=91.27 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=69.2
Q ss_pred EEEEEee--CCeEEEEEEEEEeC------CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHH
Q 002195 823 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 894 (954)
Q Consensus 823 Y~~VL~~--~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~ 894 (954)
|.++.+. ++++||.+.+++.. ..++.+.-++|.++|||||+|+.|++.+++.+..+|+++|++....+...|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999885432 246677789999999999999999999999999999999999998888999
Q ss_pred HHhccCcEEcC
Q 002195 895 WTDKFGFKKID 905 (954)
Q Consensus 895 w~~kfGF~~i~ 905 (954)
|.+ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999765
No 15
>PLN02825 amino-acid N-acetyltransferase
Probab=98.63 E-value=1.4e-07 Score=111.16 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=78.6
Q ss_pred EEEeeCCeEEEEEEEEEeCC-eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002195 825 AILTVNSSVVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 903 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g~-~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 903 (954)
+|++.+|++||+|.+..+.. +.+||-.+||+++|||+|+|++||+.+|+.++++|+++|++.+ ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 35689999999999877654 6899999999999999999999999999999999999999876 467788888 99999
Q ss_pred cChhHHHHHHHh
Q 002195 904 IDPELLSIYRKR 915 (954)
Q Consensus 904 i~~~el~~~~~~ 915 (954)
.+.++++.-++.
T Consensus 488 ~~~~~lp~~~~~ 499 (515)
T PLN02825 488 CSIESLPEARRK 499 (515)
T ss_pred eChhhCCHHHHh
Confidence 999988866555
No 16
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.61 E-value=1.2e-07 Score=105.01 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=67.6
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcC
Q 002195 826 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 905 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~ 905 (954)
|...++++||++++.. .+|..|||+++|||||+|++||+.+++.++..|+.+++|.+..++.+||++ +||..++
T Consensus 10 v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 10 IFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 3456799999998842 368999999999999999999999999999999999999999999999997 9999998
No 17
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.61 E-value=1.6e-07 Score=95.11 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=71.4
Q ss_pred EEEe-eCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002195 825 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 903 (954)
Q Consensus 825 ~VL~-~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 903 (954)
++++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.||+.+++.++..|++++++... +..||++ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 4556 789999999998878889999999999999999999999999999999999999987654 4789999 99999
Q ss_pred cChh
Q 002195 904 IDPE 907 (954)
Q Consensus 904 i~~~ 907 (954)
++..
T Consensus 125 ~~~~ 128 (169)
T PRK07922 125 IDGT 128 (169)
T ss_pred Cccc
Confidence 8753
No 18
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.60 E-value=1.4e-08 Score=115.10 Aligned_cols=123 Identities=28% Similarity=0.664 Sum_probs=81.3
Q ss_pred ccccccccccccc-----CCeeccCCCCCccCcccCcCCCCCCCCccccccccc--------cc--ccccccccccccc-
Q 002195 572 KDNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM--------FE--RKRFLQHDANAVE- 635 (954)
Q Consensus 572 ~~ndd~C~vC~dg-----G~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~--------~~--~e~~v~~n~na~a- 635 (954)
+.-|+.|.+|... ..+++||+|.-+.|+.|+++.-+|+|.|+|..|... ++ ..+++.....+.-
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~ 269 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWG 269 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchH
Confidence 3456788888743 349999999999999999999999999999999542 22 1233322222111
Q ss_pred ------------cccccccCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCC--CcCcccCccccCc
Q 002195 636 ------------AGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 701 (954)
Q Consensus 636 ------------~g~~~gvd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~ 701 (954)
-+.....++++.+. -+. ...+..+|.+|+.. .++.++|. .|-++||++|.+.
T Consensus 270 H~iCA~~~pelsF~~l~~~dpI~~i~-----sVs-~srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArr 335 (669)
T COG5141 270 HVICAMFNPELSFGHLLSKDPIDNIA-----SVS-SSRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARR 335 (669)
T ss_pred hHhHHHhcchhccccccccchhhhhc-----ccc-hhhHhheeeEEccc--------Ccceeeecccchhhhhhhhhhhh
Confidence 11222233333221 111 12233469999974 37999999 5999999999998
Q ss_pred ccCCccc
Q 002195 702 HKMADLR 708 (954)
Q Consensus 702 ~~~~~Lk 708 (954)
.+...++
T Consensus 336 ag~f~~~ 342 (669)
T COG5141 336 AGYFDLN 342 (669)
T ss_pred cchhhhh
Confidence 8776664
No 19
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.60 E-value=3.2e-07 Score=86.58 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=80.0
Q ss_pred HHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEeeCCeEEEEEEEEEe-----CC--eeEEeeeeE
Q 002195 781 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 853 (954)
Q Consensus 781 La~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~~~~vVsaA~lri~-----g~--~vAEiplVA 853 (954)
..+...++.++|.+-..+. ..+-|..+.-. .-++++.+.++++||.+.+... |. .++.|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNLYG----PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHHHH----TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcccC----cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4566778888885543332 22333222211 1156777889999998877554 43 589999999
Q ss_pred eecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002195 854 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 854 T~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 904 (954)
|.++|||||++++||+++++.++..|+.-+++-+ ...++|.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999877 34789988 999864
No 20
>PRK03624 putative acetyltransferase; Provisional
Probab=98.55 E-value=2.3e-07 Score=87.26 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=68.9
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhcc
Q 002195 823 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 899 (954)
Q Consensus 823 Y~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kf 899 (954)
+.+++..++++||.+.+...+ ..+.+..++|+++|||||+|+.|+..+++.+...|++++.+.+. ..+..+|.+ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667789999999876543 45678889999999999999999999999999999999877654 458889988 9
Q ss_pred CcEEcChh
Q 002195 900 GFKKIDPE 907 (954)
Q Consensus 900 GF~~i~~~ 907 (954)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99976643
No 21
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.54 E-value=3.1e-07 Score=106.09 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=74.2
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002195 826 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 904 (954)
|++.++++||++.+..+. ...++|-.++|+++|||||+|++||+.+|+.+++.|.+++++.+. .+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHHH-CCCEEC
Confidence 457899999999998874 468999999999999999999999999999999999999887654 57789987 999999
Q ss_pred ChhHHHH
Q 002195 905 DPELLSI 911 (954)
Q Consensus 905 ~~~el~~ 911 (954)
+..+++.
T Consensus 404 g~~~l~~ 410 (429)
T TIGR01890 404 SVDELPE 410 (429)
T ss_pred ChhhCCH
Confidence 9977663
No 22
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.51 E-value=3.3e-08 Score=106.07 Aligned_cols=78 Identities=29% Similarity=0.684 Sum_probs=67.6
Q ss_pred cccCCCccccCCCCccCCcccccccC-----CCCCccccc-ccccccccc---CCeeccCCCCCccCcccCcCCCCCCCC
Q 002195 541 YKNGLGIICHCCNSEVSPSQFEAHAG-----RQYPGKDND-DLCTICADG---GNLLPCDGCPRAFHKECASLSSIPQGD 611 (954)
Q Consensus 541 ~~~~~GI~C~cC~~~vsPs~FE~hag-----~k~~~~~nd-d~C~vC~dg---G~Ll~CD~CprafH~~CL~l~~vP~g~ 611 (954)
.+..+.|+|.-|..-.||++.+.... ..|.|.+.+ ..|.||+.+ .++++||.|+++||.+|.+|..+|.|.
T Consensus 274 ~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~ 353 (381)
T KOG1512|consen 274 SRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGE 353 (381)
T ss_pred hhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccccCCCCccccccccccCcc
Confidence 35678899999999999999987643 457888877 889999965 679999999999999999999999999
Q ss_pred cccc-ccc
Q 002195 612 WYCK-YCQ 618 (954)
Q Consensus 612 W~C~-~C~ 618 (954)
|.|. .|.
T Consensus 354 WICD~~C~ 361 (381)
T KOG1512|consen 354 WICDMRCR 361 (381)
T ss_pred chhhhHHH
Confidence 9998 454
No 23
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.46 E-value=4.8e-07 Score=109.01 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=77.8
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002195 825 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 904 (954)
+|++.+|++||.+.+.....+.++|..++|+++|||||+|+.||+.+++.++..|++.+++.+ .+..||++ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHHH-CCCEEC
Confidence 456789999999999887777899999999999999999999999999999999999998865 35789998 999999
Q ss_pred ChhHHH-HHHHhc
Q 002195 905 DPELLS-IYRKRC 916 (954)
Q Consensus 905 ~~~el~-~~~~~c 916 (954)
+..+++ .+...|
T Consensus 583 ~~~~~~~~~~~~~ 595 (614)
T PRK12308 583 SKSLLPEKVLKDC 595 (614)
T ss_pred CcccCChHHHHhh
Confidence 987765 555554
No 24
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.45 E-value=8.8e-07 Score=82.60 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.2
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec---chhhhHHHHHhccCc
Q 002195 825 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGF 901 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~eA~~~w~~kfGF 901 (954)
++.+.++++||.+.++... ....+-.++|+++|||||+|+.|++.+++.+...|..++++. ....+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 3445689999999987644 457788899999999999999999999999999999999884 45668899999 999
Q ss_pred EEcCh
Q 002195 902 KKIDP 906 (954)
Q Consensus 902 ~~i~~ 906 (954)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98765
No 25
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.45 E-value=5.1e-07 Score=101.39 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=72.4
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 901 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 901 (954)
.|+++++.+|++||+|++ .|. .|..|||+++|||+|+|+.||..+++.+...|+..++|.+.+.+..||++ +||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cCC
Confidence 567778899999999997 342 48899999999999999999999999999999999999999999999988 999
Q ss_pred EEcChh
Q 002195 902 KKIDPE 907 (954)
Q Consensus 902 ~~i~~~ 907 (954)
..+...
T Consensus 105 ~~i~~~ 110 (332)
T TIGR00124 105 KTLAEA 110 (332)
T ss_pred EEeeee
Confidence 999864
No 26
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.45 E-value=9.3e-08 Score=118.79 Aligned_cols=126 Identities=27% Similarity=0.575 Sum_probs=80.0
Q ss_pred cccccccccccccC-----CeeccCCCCCccCcccCcCCCCCCCCcccccccccccc----------ccccccccccccc
Q 002195 572 KDNDDLCTICADGG-----NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER----------KRFLQHDANAVEA 636 (954)
Q Consensus 572 ~~ndd~C~vC~dgG-----~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~~~~----------e~~v~~n~na~a~ 636 (954)
.+.|..|.||.++. .+++||+|+.++|+.|++..-+|+|.|.|..|...-++ ++++..+.....+
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~ 295 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWA 295 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCcee
Confidence 45678999999763 48999999999999999999999999999999764321 2222222221111
Q ss_pred --------ccccccCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCC--CcCcccCccccCcccCC
Q 002195 637 --------GRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMA 705 (954)
Q Consensus 637 --------g~~~gvd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~~~~~ 705 (954)
+.+...+..-......++.+.. ......|++|+..+ .+..++|. .|-.+||++|.+..|+.
T Consensus 296 Hv~caiwipev~F~nt~~~E~I~~i~~i~~-aRwkL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~~agl~ 366 (1051)
T KOG0955|consen 296 HVVCAIWIPEVSFANTVFLEPIDSIENIPP-ARWKLTCYICKQKG-------LGACIQCSKANCYTAFHVTCARRAGLY 366 (1051)
T ss_pred eeehhhcccccccccchhhccccchhcCcH-hhhhceeeeeccCC-------CCcceecchhhhhhhhhhhhHhhcCce
Confidence 1110000000000111222221 12345699999753 57889998 69999999999887654
No 27
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.44 E-value=8.2e-07 Score=91.10 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=71.1
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDK 898 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~k 898 (954)
++.++...++++||.+.+...+...++|-.+++.++|||||+|+.|+..+++.+...|+.++++... ..+..+|++
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 3333444578999999998777677999999999999999999999999999999999999987644 468899988
Q ss_pred cCcEEcCh
Q 002195 899 FGFKKIDP 906 (954)
Q Consensus 899 fGF~~i~~ 906 (954)
+||+..+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99998653
No 28
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.43 E-value=8.6e-07 Score=90.97 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=70.0
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhccCcE
Q 002195 826 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFK 902 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kfGF~ 902 (954)
+...++++||.+.++......+++-.+++.++|||||+|+.|+..+++.+..+|+.+|.+... ..|..||.+ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 345688999999998776677899999999999999999999999999999999999998743 458999998 9998
Q ss_pred EcCh
Q 002195 903 KIDP 906 (954)
Q Consensus 903 ~i~~ 906 (954)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 29
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.43 E-value=1.3e-07 Score=110.88 Aligned_cols=46 Identities=41% Similarity=1.193 Sum_probs=41.4
Q ss_pred ccccccccccCCe---eccCCCCCccCcccCc----CCCCCCCCccccccccc
Q 002195 575 DDLCTICADGGNL---LPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 575 dd~C~vC~dgG~L---l~CD~CprafH~~CL~----l~~vP~g~W~C~~C~~~ 620 (954)
+++|+.|...|.. +|||+||++||+.||+ ...+|.|.|+|+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999998876 9999999999999996 45789999999999875
No 30
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.42 E-value=7.5e-07 Score=103.15 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=73.5
Q ss_pred EEEeeCCeEEEEEEEEEeC-CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002195 825 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 903 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 903 (954)
++++.++++||.+.+..+. ...++|..++|+++|||||+|++||+.+++.++..|+.++++.+ ..|..||.+ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 3557899999999887654 36899999999999999999999999999999999999998765 468899988 99999
Q ss_pred cChhHHH
Q 002195 904 IDPELLS 910 (954)
Q Consensus 904 i~~~el~ 910 (954)
++..+++
T Consensus 415 ~g~~~~~ 421 (441)
T PRK05279 415 VDVDDLP 421 (441)
T ss_pred CChhhCc
Confidence 9986655
No 31
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.42 E-value=6.6e-07 Score=88.93 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=73.6
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEE--eeeeEeecCcccCChhHHHHHHHHHHhhhcC-ccEEEecchhhhHHHHHhc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDK 898 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAE--iplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~~eA~~~w~~k 898 (954)
..-+++..+|++|+.|+|-..+....+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.|+..++.||..
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~- 128 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS- 128 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-
Confidence 444555569999999999887776666 9999999999999999999987777666554 667999999999999999
Q ss_pred cCcEEcChhHH
Q 002195 899 FGFKKIDPELL 909 (954)
Q Consensus 899 fGF~~i~~~el 909 (954)
|||.+.+++-+
T Consensus 129 ~GFv~~~e~yl 139 (155)
T COG2153 129 FGFVRVGEEYL 139 (155)
T ss_pred hCcEEcCchhh
Confidence 99999998543
No 32
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.40 E-value=8e-08 Score=113.56 Aligned_cols=135 Identities=26% Similarity=0.518 Sum_probs=80.2
Q ss_pred ccccccccccc--CCeec-cCCCCCccCcccCcCCCCCCCCccccccccccccccccccccc--ccccccccccCccccc
Q 002195 574 NDDLCTICADG--GNLLP-CDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDAN--AVEAGRVSGVDSVEQI 648 (954)
Q Consensus 574 ndd~C~vC~dg--G~Ll~-CD~CprafH~~CL~l~~vP~g~W~C~~C~~~~~~e~~v~~n~n--a~a~g~~~gvd~ieqi 648 (954)
....|.+|... .+|+- =..|.+-||..|++ .|..-.--||.|+..|..-.......+ ....-+ ++..+++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~--sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP---~EEs~~~ 196 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVG--SWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLP---SEESENI 196 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhh--hhhhhcccCchhhhhhheeeeeccccccceeEecc---hhhhhhh
Confidence 34678888732 22322 23588889999985 233345579999887643322211111 000000 0000000
Q ss_pred hh----hhhhhhccccccCCcceecccCCCCCCCCCCCceeeCCCcCcc-cCccccCcccCCcccCCCCCcceecCCchh
Q 002195 649 TK----RCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 649 ~k----Rc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCera-yHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
+. .......+...+...|.+|..+| .+..||+||.|... ||++||++ +|.++|-+.||| .+|.-
T Consensus 197 ~e~~~d~~~d~~~~~~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~d 265 (1134)
T KOG0825|consen 197 LEKGGDEKQDQISGLSQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSL 265 (1134)
T ss_pred hhhccccccccccCcccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchh
Confidence 00 00000112234455699999887 56789999999998 99999998 788999999999 89964
Q ss_pred h
Q 002195 724 I 724 (954)
Q Consensus 724 i 724 (954)
+
T Consensus 266 L 266 (1134)
T KOG0825|consen 266 L 266 (1134)
T ss_pred h
Confidence 3
No 33
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.37 E-value=2.3e-06 Score=83.19 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=70.4
Q ss_pred cEEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec---chhhhHHHHHh
Q 002195 821 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTD 897 (954)
Q Consensus 821 GfY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~eA~~~w~~ 897 (954)
+++.+++..++++||.+.++.... .+++-.++|.++|||+|+|+.|+..+++.+...|+..+++. .-..+..+|++
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455556678899999999876654 46677899999999999999999999999999999988875 34568899999
Q ss_pred ccCcEEcCh
Q 002195 898 KFGFKKIDP 906 (954)
Q Consensus 898 kfGF~~i~~ 906 (954)
+||+..+.
T Consensus 118 -~Gf~~~~~ 125 (146)
T PRK09491 118 -LGFNEVTI 125 (146)
T ss_pred -cCCEEeee
Confidence 99997765
No 34
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.32 E-value=1.7e-06 Score=93.72 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=70.4
Q ss_pred EEEEEEeeCCeEEEEEEEEEe-CCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh---hHHHHHh
Q 002195 822 MYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTD 897 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~-g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e---A~~~w~~ 897 (954)
.+.++++.++++||.+++.+. +...+||--++|+++|||||+|+.||..+++.++..|+.++++.+... +..+|.+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k 237 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR 237 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH
Confidence 344566779999999998543 346799999999999999999999999999999999999999887655 3567877
Q ss_pred ccCcEEcCh
Q 002195 898 KFGFKKIDP 906 (954)
Q Consensus 898 kfGF~~i~~ 906 (954)
+||+..+.
T Consensus 238 -~GF~~~G~ 245 (266)
T TIGR03827 238 -LGYAYGGT 245 (266)
T ss_pred -cCCccccE
Confidence 99997665
No 35
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.31 E-value=4.1e-07 Score=92.08 Aligned_cols=124 Identities=19% Similarity=0.392 Sum_probs=63.7
Q ss_pred ccccccc------cCCeeccCCCCCccCcccCcC--------CCCCCCC--ccccccccccccccccccccccccccccc
Q 002195 577 LCTICAD------GGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHDANAVEAGRVS 640 (954)
Q Consensus 577 ~C~vC~d------gG~Ll~CD~CprafH~~CL~l--------~~vP~g~--W~C~~C~~~~~~e~~v~~n~na~a~g~~~ 640 (954)
.|.+|+. .|.|++|.||..+||..||+. +++.++. .+|..|....+.+...++....-..-...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 3677742 367999999999999999973 3444444 68999977655544443322211111111
Q ss_pred ccC--cc-ccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCccc
Q 002195 641 GVD--SV-EQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 703 (954)
Q Consensus 641 gvd--~i-eqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~ 703 (954)
|.. |. +..+.+..... ..+.++=.-.-..+....+..++.|+.|..|.++||...|++.+
T Consensus 81 G~~c~pfr~r~T~kQEe~~---ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKL---REENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCcccCCCCCcHHHHHH---HHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 110 00 00000000000 00000000000001111223456799999999999999998853
No 36
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.29 E-value=4.9e-07 Score=106.16 Aligned_cols=50 Identities=38% Similarity=0.969 Sum_probs=42.2
Q ss_pred cceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchh
Q 002195 665 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 665 ~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
+|..|++.+ .| ..+|.||.|++.||.+||.|+ ...+.+|.|.||| +.|..
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C-~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFC-PECKI 304 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCcccc-CCCee
Confidence 799999865 34 578999999999999999985 2467899999999 78863
No 37
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.28 E-value=3.1e-07 Score=110.59 Aligned_cols=156 Identities=25% Similarity=0.472 Sum_probs=100.6
Q ss_pred CCCCccCcccCc--CCCCCCCCcccccccccccccccccccccccccccccccCccccchhhhhhhhccccccCCcceec
Q 002195 592 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 669 (954)
Q Consensus 592 ~CprafH~~CL~--l~~vP~g~W~C~~C~~~~~~e~~v~~n~na~a~g~~~gvd~ieqi~kRc~R~vkd~e~e~~~C~IC 669 (954)
.|+|+||..|++ +..-|+++|.|+.|....... .+.++. -...+..+|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~------------------~~~~~~---------~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQV------------------EAKDDD---------WDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccc------------------ccccCC---------cchhhhhhhhhh
Confidence 489999999996 556668999999997531100 000000 013345679999
Q ss_pred ccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCch--hhHHHHHHHhhhc--cccCc-hhHH
Q 002195 670 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS--RINSVLQNLLVQE--AEKLP-EFHL 744 (954)
Q Consensus 670 ~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~--~i~~~LqkLla~g--~e~lp-~sll 744 (954)
... ++++.||.|..+||..|+.+ ++...|.+.|.|+ .|. ....+.++++.+. +...| ...-
T Consensus 54 ~~~---------g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 ADG---------GELLWCDTCPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cCC---------CcEEEeccccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 954 47889999999999999987 6777888889995 883 2222445554432 22223 1111
Q ss_pred HHhhhhhcCcccccccccceeeEcCCCCCChhhHHHHHHHHHHhh
Q 002195 745 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIFH 789 (954)
Q Consensus 745 ~~Ikk~~e~gle~~~~~~ikW~lLsgk~~s~e~~skLa~AL~If~ 789 (954)
+.+. +....+...+++.++|+.+++.++.|....++...+..+-
T Consensus 120 ~~~~-~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~ 163 (696)
T KOG0383|consen 120 GVIS-PRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP 163 (696)
T ss_pred CccC-CcccccchhhhcccccccCCccchhHHHHHHhhhhcccch
Confidence 1121 1112223356789999999999999988888866555553
No 38
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.26 E-value=3.3e-07 Score=107.73 Aligned_cols=90 Identities=30% Similarity=0.862 Sum_probs=71.6
Q ss_pred ccccccccccc-----CCeeccCCCCCccCcccCc-C-CCC-CCCCcccccccccccccccccccccccccccccccCcc
Q 002195 574 NDDLCTICADG-----GNLLPCDGCPRAFHKECAS-L-SSI-PQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSV 645 (954)
Q Consensus 574 ndd~C~vC~dg-----G~Ll~CD~CprafH~~CL~-l-~~v-P~g~W~C~~C~~~~~~e~~v~~n~na~a~g~~~gvd~i 645 (954)
...+|.+|+.. |.|+-|..|...||.+|+. + ... -.+-|.|+.|+.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-------------------------- 70 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-------------------------- 70 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee--------------------------
Confidence 45678888855 4589999999999999996 2 111 134499999973
Q ss_pred ccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecC
Q 002195 646 EQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCM 719 (954)
Q Consensus 646 eqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~ 719 (954)
|..|+..+ ++...++|+.|+-.||.+|..| .++.+|.+.|+|+.
T Consensus 71 --------------------Ce~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 71 --------------------CEACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLCKK 114 (694)
T ss_pred --------------------eeeccccC------CcccccccccccccccccccCC----ccccccCcccccHH
Confidence 77777543 6788999999999999999988 67889999999943
No 39
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.25 E-value=4.9e-06 Score=81.16 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=68.6
Q ss_pred EEEEEEeeCCeEEEEEEEEEeC----CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecch---hhhHH
Q 002195 822 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAA---EEAES 893 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~---~eA~~ 893 (954)
.+.++...++++||.+.+.... ...+++. +++.++|||+|+|+.|++.+++.+.. +|..++.+... ..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3556667889999999987542 3456665 89999999999999999999999888 79888776653 56888
Q ss_pred HHHhccCcEEcChhH
Q 002195 894 IWTDKFGFKKIDPEL 908 (954)
Q Consensus 894 ~w~~kfGF~~i~~~e 908 (954)
+|++ +||...+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9998 9999877633
No 40
>PRK13688 hypothetical protein; Provisional
Probab=98.24 E-value=3.7e-06 Score=84.96 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=59.2
Q ss_pred EeeCCeEEEEEEEEEe----------CCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002195 827 LTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 896 (954)
Q Consensus 827 L~~~~~vVsaA~lri~----------g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~ 896 (954)
++.++++||.+.+... ..+.++|-.++|+++|||||+|++||+.+++. ++. +.+.+...|..||.
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~ 124 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL 124 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH
Confidence 4578899998877442 24678999999999999999999999876553 433 34456678899999
Q ss_pred hccCcEEcChh
Q 002195 897 DKFGFKKIDPE 907 (954)
Q Consensus 897 ~kfGF~~i~~~ 907 (954)
+ +||..++..
T Consensus 125 k-~GF~~~~~~ 134 (156)
T PRK13688 125 K-LGFTPVEYK 134 (156)
T ss_pred h-CCCEEeEEe
Confidence 9 999988765
No 41
>PRK09831 putative acyltransferase; Provisional
Probab=98.23 E-value=3.2e-06 Score=82.80 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002195 825 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 904 (954)
+|...+|++||.+.+.. +.+..++|.++|||||+|++||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 34568899999988742 4677899999999999999999999998766 455666789999999 999999
Q ss_pred ChhH
Q 002195 905 DPEL 908 (954)
Q Consensus 905 ~~~e 908 (954)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8865
No 42
>PHA00673 acetyltransferase domain containing protein
Probab=98.20 E-value=8.6e-06 Score=82.48 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=72.4
Q ss_pred EEEEEEeeCCeEEEEEEEEEeC------CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh--hHH
Q 002195 822 MYCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AES 893 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e--A~~ 893 (954)
-..+|.+.+|++||++.+.+.. ...+.|-.|-|++++||||+|++||..+|+.++..|...|.+.|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3444567799999999987765 35778999999999999999999999999999999999999999977 689
Q ss_pred HHHhccCcEEcC
Q 002195 894 IWTDKFGFKKID 905 (954)
Q Consensus 894 ~w~~kfGF~~i~ 905 (954)
||.+ .|++...
T Consensus 135 fy~~-~g~~~~~ 145 (154)
T PHA00673 135 LLPA-AGYRETN 145 (154)
T ss_pred HHHh-CCchhhc
Confidence 9999 9998654
No 43
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.16 E-value=4.5e-06 Score=82.27 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=75.2
Q ss_pred EEEEEEee--CCeEEEEEEEEEeC------CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHH
Q 002195 822 MYCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 893 (954)
Q Consensus 822 fY~~VL~~--~~~vVsaA~lri~g------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~ 893 (954)
+|.+|+++ .++||++|+|.|.- ..-.+|.=|+|+++||||++|+.|+..+-.++.++|+-.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78888885 48999999997643 23467888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcCh
Q 002195 894 IWTDKFGFKKIDP 906 (954)
Q Consensus 894 ~w~~kfGF~~i~~ 906 (954)
||.+ |||+..+.
T Consensus 133 FYeK-cG~s~~~~ 144 (150)
T KOG3396|consen 133 FYEK-CGYSNAGN 144 (150)
T ss_pred HHHH-cCccccch
Confidence 9999 99997763
No 44
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.14 E-value=8.5e-07 Score=104.98 Aligned_cols=141 Identities=24% Similarity=0.517 Sum_probs=86.2
Q ss_pred cccccccccccc-----CCeeccCCCCCccCcccCcCCCCCCCCcccccccccccc--------cccccccccccc--c-
Q 002195 573 DNDDLCTICADG-----GNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER--------KRFLQHDANAVE--A- 636 (954)
Q Consensus 573 ~ndd~C~vC~dg-----G~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~~~~--------e~~v~~n~na~a--~- 636 (954)
.+|-.|.+|..+ .++++||.|.-..|+.|+++.++|+|.|.|..|.-.+++ ++.++++..... .
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 367788888844 579999999999999999999999999999999654332 334444333210 0
Q ss_pred ------cc--ccccCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCC--CcCcccCccccCcccCCc
Q 002195 637 ------GR--VSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMAD 706 (954)
Q Consensus 637 ------g~--~~gvd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~~~~~~ 706 (954)
.. ++-.+-++.|++. ..++. ......|.+|+.. .+..|+|. .|..+||+.|...+|+..
T Consensus 349 sCALwIPEVsie~~ekmePItkf--s~Ipe-sRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~~ 417 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKF--SHIPE-SRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLEM 417 (893)
T ss_pred eeeeccceeeccCHhhcCccccc--CCCcH-HHHHHHHHHhccc--------CcceEEecccchhhhccchhhhhcCCee
Confidence 00 0001111112110 00000 1122349999863 35789998 899999999999987632
Q ss_pred ---ccCCC--CCcceecCCchhhH
Q 002195 707 ---LRELP--KGKWFCCMDCSRIN 725 (954)
Q Consensus 707 ---LkelP--~g~WfC~~~C~~i~ 725 (954)
+.+.. ...-|| ..|..+.
T Consensus 418 ~~~~~~~D~v~~~s~c-~khs~~~ 440 (893)
T KOG0954|consen 418 KTILKENDEVKFKSYC-SKHSDHR 440 (893)
T ss_pred eeeeccCCchhheeec-ccccccc
Confidence 11211 245688 4555444
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.08 E-value=1.8e-05 Score=85.75 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=64.7
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch-hhhHHHHHhccCc
Q 002195 823 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGF 901 (954)
Q Consensus 823 Y~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~-~eA~~~w~~kfGF 901 (954)
+.+|...++++||.+.+.......+++-.++|+++|||+|+|++||+.+++.+. +--.|++... ..|+.||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 344556789999999988875556788899999999999999999999999865 2234555543 568999998 999
Q ss_pred EEcCh
Q 002195 902 KKIDP 906 (954)
Q Consensus 902 ~~i~~ 906 (954)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 87765
No 46
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.07 E-value=1.9e-05 Score=79.95 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=62.5
Q ss_pred EEEEEEEEEeCC---eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHHHhccCcEEcCh
Q 002195 833 VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 833 vVsaA~lri~g~---~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w~~kfGF~~i~~ 906 (954)
.|||........ .-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.+. ..|..+|++ |||.....
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 577776654332 35999999999999999999999999999999999999999865 458899999 99998654
No 47
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.06 E-value=1.5e-05 Score=86.35 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=67.7
Q ss_pred cEEEEEEeeCCeEEEEEEEEEeCC--eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch---hhhHHHH
Q 002195 821 GMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIW 895 (954)
Q Consensus 821 GfY~~VL~~~~~vVsaA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~---~eA~~~w 895 (954)
++|.++-..++++||.+.+.+... ..+++-.++|+++|||||+|+.||..+++.+...|+.++.+... ..|..||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 454433222689999876666542 46888889999999999999999999999999999998887654 4689999
Q ss_pred HhccCcEEcCh
Q 002195 896 TDKFGFKKIDP 906 (954)
Q Consensus 896 ~~kfGF~~i~~ 906 (954)
.+ +||+....
T Consensus 279 ~k-~GF~~~~~ 288 (292)
T TIGR03448 279 EK-LGFTVAEV 288 (292)
T ss_pred HH-cCCEEccc
Confidence 98 99997653
No 48
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.01 E-value=3.5e-05 Score=75.02 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=63.6
Q ss_pred eCCeEEEEEEEEEeCC--eeEEeeeeEeecCcccCChhHHHHHHHHHHh-hhcCccEEEecch---hhhHHHHHhccCcE
Q 002195 829 VNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAA---EEAESIWTDKFGFK 902 (954)
Q Consensus 829 ~~~~vVsaA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l-~~lgV~~LvLpA~---~eA~~~w~~kfGF~ 902 (954)
.+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..+++.+ ..+|+++|.+... ..++.||++ +||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~-~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK-LGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH-TTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh-CCCE
Confidence 5999999999986553 578887 455599999999999999999999 9999999876433 558899999 9999
Q ss_pred EcCh
Q 002195 903 KIDP 906 (954)
Q Consensus 903 ~i~~ 906 (954)
..+.
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 49
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.01 E-value=2.1e-05 Score=78.60 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=65.9
Q ss_pred EEEEEe-eCCeEEEEEEEEE--eCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecc---hhhhHHHHH
Q 002195 823 YCAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWT 896 (954)
Q Consensus 823 Y~~VL~-~~~~vVsaA~lri--~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA---~~eA~~~w~ 896 (954)
+++|.+ .++++||.+.+.. ...+.+.+-.+||+++|||||+|+.|++.+++.+...++.++.+.. -..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 345556 4679999876533 2345788999999999999999999999999999988888877654 456788998
Q ss_pred hccCcEEcCh
Q 002195 897 DKFGFKKIDP 906 (954)
Q Consensus 897 ~kfGF~~i~~ 906 (954)
+ +||+...+
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99987444
No 50
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.98 E-value=1.8e-05 Score=78.42 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=62.8
Q ss_pred eEEEEEEEE-EeCC----eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCc-cEEEecchh---hhHHHHHhccCcE
Q 002195 832 SVVSAGILR-VFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 902 (954)
Q Consensus 832 ~vVsaA~lr-i~g~----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV-~~LvLpA~~---eA~~~w~~kfGF~ 902 (954)
+++|....+ +.+. ..++|-.+||+++|||+|+|++|+..+++.+...+. ..++|-... .|+.+|.+ +||.
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 477777774 3332 279999999999999999999999999999999986 777777663 48999999 9999
Q ss_pred EcChhH
Q 002195 903 KIDPEL 908 (954)
Q Consensus 903 ~i~~~e 908 (954)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 887644
No 51
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.95 E-value=2.7e-05 Score=93.04 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=67.8
Q ss_pred cEEEEEEee--CCeEEEEEEEEEe------CCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecc---hh
Q 002195 821 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AE 889 (954)
Q Consensus 821 GfY~~VL~~--~~~vVsaA~lri~------g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA---~~ 889 (954)
+.+.+|.+. +|++||.+....+ +...++|-.++|+++|||||+|++||..+++.++..|+.++.|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 344455553 6999999875332 123478889999999999999999999999999999999987654 36
Q ss_pred hhHHHHHhccCcEEcCh
Q 002195 890 EAESIWTDKFGFKKIDP 906 (954)
Q Consensus 890 eA~~~w~~kfGF~~i~~ 906 (954)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 78999998 99988754
No 52
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=97.94 E-value=3.8e-05 Score=61.08 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=54.9
Q ss_pred EEEeeCCeEEEEEEEEEeC--CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEe
Q 002195 825 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 885 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvL 885 (954)
++++.++++||.+.+.... ...+++-.++|+++|||+|+++.|+..+.+.+...|..++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999988876 478999999999999999999999999999999999999875
No 53
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.91 E-value=4.9e-05 Score=69.37 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=55.6
Q ss_pred CCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE-ec-chhhhHHHHHhccCcEEcCh
Q 002195 830 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV-LP-AAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 830 ~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv-Lp-A~~eA~~~w~~kfGF~~i~~ 906 (954)
+++.+..+.-.+..+. ++|..|.|.++|||+|+|+.|+.++.+.+..-|..-+. +. .-..|..+|++ +||+.+.+
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3455555555555555 99999999999999999999999999998888876533 22 33457899999 99998754
No 54
>PHA01807 hypothetical protein
Probab=97.90 E-value=3.1e-05 Score=78.27 Aligned_cols=74 Identities=7% Similarity=-0.014 Sum_probs=59.9
Q ss_pred EEEEeeCCeEEEEEEEEEeCC----eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh---hHHHHH
Q 002195 824 CAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWT 896 (954)
Q Consensus 824 ~~VL~~~~~vVsaA~lri~g~----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e---A~~~w~ 896 (954)
.++++.++++||.+.+..... .+.+|..+.|.++|||+|+|+.||+.+++.++..|+..|++-.... |..+|.
T Consensus 55 ~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~ 134 (153)
T PHA01807 55 ELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYR 134 (153)
T ss_pred EEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHH
Confidence 355678999999999865432 2344555799999999999999999999999999999998876644 677888
Q ss_pred h
Q 002195 897 D 897 (954)
Q Consensus 897 ~ 897 (954)
+
T Consensus 135 ~ 135 (153)
T PHA01807 135 R 135 (153)
T ss_pred h
Confidence 7
No 55
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.90 E-value=6.4e-06 Score=99.51 Aligned_cols=49 Identities=43% Similarity=1.026 Sum_probs=42.7
Q ss_pred cccccccccccccCCeeccCCCCCccCcccCc--CCCCCCCCccccccccc
Q 002195 572 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 572 ~~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~--l~~vP~g~W~C~~C~~~ 620 (954)
..+...|.+|+++|++++||.|+.+||..|++ +...|.++|.|+.|.+.
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 34568899999999999999999999999996 66778888999999554
No 56
>PRK01346 hypothetical protein; Provisional
Probab=97.87 E-value=4.7e-05 Score=87.02 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=67.3
Q ss_pred EEEEeeCCeEEEEEEEEEe------CC--eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHH
Q 002195 824 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 895 (954)
Q Consensus 824 ~~VL~~~~~vVsaA~lri~------g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w 895 (954)
.++.+.++++||.+.+..+ |. ..+.|-.|||.++|||+|+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3556788999999887543 22 478999999999999999999999999999999999988887664 4689
Q ss_pred HhccCcEEcCh
Q 002195 896 TDKFGFKKIDP 906 (954)
Q Consensus 896 ~~kfGF~~i~~ 906 (954)
.+ |||.....
T Consensus 127 ~r-~Gf~~~~~ 136 (411)
T PRK01346 127 GR-FGYGPATY 136 (411)
T ss_pred hh-CCCeeccc
Confidence 98 99987765
No 57
>PRK10562 putative acetyltransferase; Provisional
Probab=97.82 E-value=6.6e-05 Score=73.13 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=59.0
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEc
Q 002195 825 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 825 ~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i 904 (954)
+++..++++||.+.+... ..+..+++.++|||+|+|+.||+.+++.+..+.+ .+...-..+..||++ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 355677899999887432 4677899999999999999999999997654332 233445678999999 999998
Q ss_pred Chh
Q 002195 905 DPE 907 (954)
Q Consensus 905 ~~~ 907 (954)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 864
No 58
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=9.2e-06 Score=96.50 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeecC-------CeeeccCcccCCCccc
Q 002195 490 NASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYAC-------GQKLLEGYKNGLGIIC 549 (954)
Q Consensus 490 ~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~~-------gq~ll~G~~~~~GI~C 549 (954)
.|+||||.|||+++||+ ++..|+| +|....|+.|+||||.|+ .|.|.||...|.|.+-
T Consensus 195 RFiNHSC~PNa~~~KWtV~~~lRvG--iFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IG 260 (729)
T KOG4442|consen 195 RFINHSCDPNAEVQKWTVPDELRVG--IFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIG 260 (729)
T ss_pred HhhcCCCCCCceeeeeeeCCeeEEE--EeEecccCCCceeeEecccccccccccccccCCcccccccC
Confidence 57999999999999999 8999999 999999999999999986 4799999999999883
No 59
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.80 E-value=0.0001 Score=74.57 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=66.5
Q ss_pred EEEEeeCCeEEEEEEEEEeC--CeeEEeeeeEeecCcccCChhHHHHHHHHHHhh-hcCccEEEecch---hhhHHHHHh
Q 002195 824 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAA---EEAESIWTD 897 (954)
Q Consensus 824 ~~VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~-~lgV~~LvLpA~---~eA~~~w~~ 897 (954)
.++++.+|++||.+.+.... ...+++. +++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..+..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 44567799999999886553 3467775 8999999999999999999999875 689999988643 468899999
Q ss_pred ccCcEEcCh
Q 002195 898 KFGFKKIDP 906 (954)
Q Consensus 898 kfGF~~i~~ 906 (954)
+||+..+.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998765
No 60
>PRK10514 putative acetyltransferase; Provisional
Probab=97.78 E-value=9.1e-05 Score=71.49 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=57.5
Q ss_pred eeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcChh
Q 002195 828 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 907 (954)
Q Consensus 828 ~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 907 (954)
..++++||.+.+.- .++..+++.++|||||+|++||+.+++.+.. +...+...-..+..+|++ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 45789999887642 3455799999999999999999999997643 344445555779999998 999998764
Q ss_pred H
Q 002195 908 L 908 (954)
Q Consensus 908 e 908 (954)
.
T Consensus 128 ~ 128 (145)
T PRK10514 128 E 128 (145)
T ss_pred c
Confidence 4
No 61
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.75 E-value=0.00017 Score=70.53 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=68.3
Q ss_pred ecEEEEEEeeCCeEEEEEEEEE------eCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhc-CccEEEecchh---
Q 002195 820 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE--- 889 (954)
Q Consensus 820 ~GfY~~VL~~~~~vVsaA~lri------~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~--- 889 (954)
.+.+.+|++.+|++||.+.+.- .....+.+-.+++.++|||||+|+.+|.++.+.+..- +++++++....
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4577888899999999887642 1345777999999999999999999999999887765 89999998765
Q ss_pred hhHHHHHhccCcEEcChh
Q 002195 890 EAESIWTDKFGFKKIDPE 907 (954)
Q Consensus 890 eA~~~w~~kfGF~~i~~~ 907 (954)
-++..+++ +||+.+++-
T Consensus 126 ~~~~~~~k-~GF~~~g~~ 142 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGEF 142 (152)
T ss_dssp HHHHHHHH-TT-EEEEEE
T ss_pred HHHHHHHH-cCCEEeeEE
Confidence 47888887 999987653
No 62
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.75 E-value=4.7e-06 Score=68.45 Aligned_cols=48 Identities=31% Similarity=0.958 Sum_probs=36.2
Q ss_pred ceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCch
Q 002195 666 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 722 (954)
Q Consensus 666 C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~ 722 (954)
|.+|++.+ ..+.||.|+.|+++||..|+.++.. ....+.+.|+| ..|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 78888743 5678999999999999999987531 12334459999 5674
No 63
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.74 E-value=8.4e-05 Score=80.62 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=68.9
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcC-ccEEEecch-hhhHHHHHhcc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA-EEAESIWTDKF 899 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA~-~eA~~~w~~kf 899 (954)
+.++.+..+|+||+.|...-.+..+|+|-.|.|.|+|||+||+.+|+..+-..+-.-| ..-|+..+. +-|-.+|.+ +
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 4455556777999999999999999999999999999999999999999877655555 445665444 557789999 9
Q ss_pred CcEEcCh
Q 002195 900 GFKKIDP 906 (954)
Q Consensus 900 GF~~i~~ 906 (954)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998874
No 64
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.73 E-value=1e-05 Score=95.55 Aligned_cols=158 Identities=22% Similarity=0.434 Sum_probs=95.5
Q ss_pred CCccccCCCCccCCcccccccC---CCCCccccc-ccccccc---ccCCeeccCCCCCccCcccCc--CCCCCCCCcccc
Q 002195 545 LGIICHCCNSEVSPSQFEAHAG---RQYPGKDND-DLCTICA---DGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCK 615 (954)
Q Consensus 545 ~GI~C~cC~~~vsPs~FE~hag---~k~~~~~nd-d~C~vC~---dgG~Ll~CD~CprafH~~CL~--l~~vP~g~W~C~ 615 (954)
....|.+|.+.+||.+...-+- -...|.+.+ -.|..|+ |...+++|+.|+-+||-+|+. ...+|.|.|+|+
T Consensus 34 ~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 34 RLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCK 113 (694)
T ss_pred cchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCcccccccccccccccccccCCccccccCcccccH
Confidence 4578999999999998873321 112255554 5677777 445699999999999999996 678999999999
Q ss_pred cccccccccccccccccccccccccccCccccchhhhhhhhccccccCCcceecccCCCCCCCCCCCceeeCCCcCcccC
Q 002195 616 YCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH 695 (954)
Q Consensus 616 ~C~~~~~~e~~v~~n~na~a~g~~~gvd~ieqi~kRc~R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayH 695 (954)
.|..+.+.+..+ .| ...+. ..-...|+. .....+|++|....... ..-.++.|++|.+|-|
T Consensus 114 k~~~c~qc~~~l--------pg--~s~~~-~~~~~~~~~-----c~s~~~cPvc~~~Y~~~---e~~~~~~c~~c~rwsh 174 (694)
T KOG4443|consen 114 KCTRCRQCDSTL--------PG--LSLDL-QEGYLQCAP-----CASLSYCPVCLIVYQDS---ESLPMVCCSICQRWSH 174 (694)
T ss_pred HHHhhhhccccc--------cc--cchhh-hccCccccc-----ccccccCchHHHhhhhc---cchhhHHHHHhccccc
Confidence 997654333211 11 00010 000011111 12245688887654211 1224689999999999
Q ss_pred ccccCcccCCcccCCCCCcceecCCch
Q 002195 696 VGCLKKHKMADLRELPKGKWFCCMDCS 722 (954)
Q Consensus 696 v~CL~~~~~~~LkelP~g~WfC~~~C~ 722 (954)
-.|-.-..+......-.-.+.| ..|.
T Consensus 175 ~~c~~~sdd~~~q~~vD~~~~C-S~CR 200 (694)
T KOG4443|consen 175 GGCDGISDDKYMQAQVDLQYKC-STCR 200 (694)
T ss_pred CCCCccchHHHHHHhhhhhccc-ceee
Confidence 9997654321111111135667 6775
No 65
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.71 E-value=0.00013 Score=81.49 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=68.7
Q ss_pred cEEEEEEee---CCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch-----hhhH
Q 002195 821 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-----EEAE 892 (954)
Q Consensus 821 GfY~~VL~~---~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~-----~eA~ 892 (954)
..|++.+.. ++.+||.+.++.. .+.++|-.+++++.|||+|+|++||..+++.++..|+.+|+|... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKK-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEec-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555543 5789999998764 467899999999999999999999999999999999999988543 5689
Q ss_pred HHHHhccCcEEc
Q 002195 893 SIWTDKFGFKKI 904 (954)
Q Consensus 893 ~~w~~kfGF~~i 904 (954)
.||.+ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 67
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.71 E-value=7.5e-06 Score=100.57 Aligned_cols=129 Identities=26% Similarity=0.423 Sum_probs=83.6
Q ss_pred cccccccccccccCCeeccCCCCCccCcccCc--CCCCCCCCcccccccccccccccccccccccccccccccCccc-cc
Q 002195 572 KDNDDLCTICADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVE-QI 648 (954)
Q Consensus 572 ~~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~--l~~vP~g~W~C~~C~~~~~~e~~v~~n~na~a~g~~~gvd~ie-qi 648 (954)
..-+|.|.+|.|.|+++||..||+.||..|.. ...+|+..|.|-.|.... .+ |.+.++.+.+ ++
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk---------vn----gvvd~vl~~~K~~ 407 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK---------VN----GVVDCVLPPSKNV 407 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhc---------cC----cccccccChhhcc
Confidence 45678999999999999999999999999996 557888999999997421 01 0111111110 00
Q ss_pred h-hhhh-----hhhccccccCCcceecccCCCCCCCCCCCceeeCCC-cCcccCc-cccCcccCCcccCCCCCcceecCC
Q 002195 649 T-KRCI-----RIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADLRELPKGKWFCCMD 720 (954)
Q Consensus 649 ~-kRc~-----R~vkd~e~e~~~C~IC~~~dfs~sgf~~~~LL~CDq-CerayHv-~CL~~~~~~~LkelP~g~WfC~~~ 720 (954)
. .|+. |.-.+.......|.||+. +++++-|+. |++.||. .||+... --..++.+-|+| .+
T Consensus 408 ~~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~-~e 475 (1414)
T KOG1473|consen 408 DSIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWER-RE 475 (1414)
T ss_pred cceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhh-HH
Confidence 0 0110 001111222234899984 358888997 9999998 9998532 123578899999 67
Q ss_pred chhhH
Q 002195 721 CSRIN 725 (954)
Q Consensus 721 C~~i~ 725 (954)
|-.-.
T Consensus 476 e~~rq 480 (1414)
T KOG1473|consen 476 EIIRQ 480 (1414)
T ss_pred HHHHh
Confidence 75433
No 68
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.70 E-value=0.00011 Score=87.41 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=64.8
Q ss_pred eCCeEEEEEEEEEeCCeeE-----------EeeeeEe--------ecCcccCChhHHHHHHHHHHhhhcCccEEEecchh
Q 002195 829 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 889 (954)
Q Consensus 829 ~~~~vVsaA~lri~g~~vA-----------EiplVAT--------~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~ 889 (954)
.++.+||-.+||....+.. |+-..++ .++|||+|+|+.||+++|+.++..|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4578888888887664322 5555544 68999999999999999999999999999999999
Q ss_pred hhHHHHHhccCcEEcCh
Q 002195 890 EAESIWTDKFGFKKIDP 906 (954)
Q Consensus 890 eA~~~w~~kfGF~~i~~ 906 (954)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998765
No 69
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.67 E-value=0.00027 Score=68.79 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=65.4
Q ss_pred EEeeCCeEEEEEEEEEeC--CeeEEeeeeEeecCcccCChhHHHHHHHHHHhh-hcCccEEEec---chhhhHHHHHhcc
Q 002195 826 ILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLP---AAEEAESIWTDKF 899 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~-~lgV~~LvLp---A~~eA~~~w~~kf 899 (954)
+++.+|++||.+.+.... ...+++... +.+.+| +|+|+.++.++++.+. .+|+.+|.+. .-..+..+|.+ +
T Consensus 55 ~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k-~ 131 (156)
T TIGR03585 55 IVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK-F 131 (156)
T ss_pred EEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-c
Confidence 446789999999997665 457788766 889999 9999999999999987 5899999864 45568899999 9
Q ss_pred CcEEcChh
Q 002195 900 GFKKIDPE 907 (954)
Q Consensus 900 GF~~i~~~ 907 (954)
||+.++..
T Consensus 132 Gf~~~g~~ 139 (156)
T TIGR03585 132 GFEREGVF 139 (156)
T ss_pred CCeEeeee
Confidence 99987754
No 70
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.66 E-value=0.00028 Score=74.16 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=63.7
Q ss_pred ecEEEEEEeeCC--eEEEEEEEEEeC-------------------------------------CeeEEeeeeEeecCccc
Q 002195 820 GGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKINHG 860 (954)
Q Consensus 820 ~GfY~~VL~~~~--~vVsaA~lri~g-------------------------------------~~vAEiplVAT~~~yRg 860 (954)
-+...++|..++ ++++|+.+-..| -.-+.|-+|||.+++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 446677888888 999999987777 24688999999999999
Q ss_pred CChhHHHHHHHHHHh-------------------------hhcCccEEEe--cchhhhHHHHHhccCcEEcChhH
Q 002195 861 KGYFQLLFACIEKLL-------------------------SFLRVKSIVL--PAAEEAESIWTDKFGFKKIDPEL 908 (954)
Q Consensus 861 qG~gr~L~~~IE~~l-------------------------~~lgV~~LvL--pA~~eA~~~w~~kfGF~~i~~~e 908 (954)
+|||++|++.+++.+ ..-+|..|=. .+.++...||.+ .||.++-=.+
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l~~ 178 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYLGQ 178 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE-S
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEEec
Confidence 999999999999999 4667776544 367889999999 9999875443
No 71
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.62 E-value=1.5e-05 Score=65.45 Aligned_cols=43 Identities=42% Similarity=1.265 Sum_probs=35.1
Q ss_pred ccccccc---cCCeeccCCCCCccCcccCcCC----CCCCCCcccccccc
Q 002195 577 LCTICAD---GGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 619 (954)
Q Consensus 577 ~C~vC~d---gG~Ll~CD~CprafH~~CL~l~----~vP~g~W~C~~C~~ 619 (954)
+|.+|+. .++++.||.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4777875 6789999999999999999865 33456899999974
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.53 E-value=0.00027 Score=72.88 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEeeCCeEEEEEEEEEe--C---CeeEEeeeeE
Q 002195 779 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF--G---QEVAELPLVA 853 (954)
Q Consensus 779 skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~~~~vVsaA~lri~--g---~~vAEiplVA 853 (954)
.-.....++.++.|.|-.. .+++..+ |...+.++. ..+|...+|++|+-.++--. | ..+.-|..+|
T Consensus 12 ~d~~~i~~~~~~aF~~~~e----~~~v~~l---R~~~~~~~~--LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLa 82 (171)
T COG3153 12 ADIPAIEALTREAFGPGRE----AKLVDKL---REGGRPDLT--LSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLA 82 (171)
T ss_pred hhHHHHHHHHHHHhhcchH----HHHHHHH---HhcCCcccc--eeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEE
Confidence 3345566677788863322 2333322 222222222 23455778999998776532 2 2566788999
Q ss_pred eecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcChhHHHHHHHhcCceeeecCcceeeeecc
Q 002195 854 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVP 933 (954)
Q Consensus 854 T~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~~el~~~~~~c~~ll~F~gt~~L~K~l~ 933 (954)
|+++|||||+|++||...++.|+.+|...+++--. -.+| .+|||.......+. . +.. +|.+..|.+.|.
T Consensus 83 V~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY-~rfGF~~~~~~~l~---~---p~~-~~~~~fl~~~L~ 151 (171)
T COG3153 83 VDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYY-SRFGFEPAAGAKLY---A---PGP-VPDERFLALELG 151 (171)
T ss_pred EchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---cccc-cccCcEEccccccc---c---CCC-CCCceEEEEEcc
Confidence 99999999999999999999999999999988766 4466 45999998876642 1 233 677888888886
Q ss_pred cCcc
Q 002195 934 ACRI 937 (954)
Q Consensus 934 ~~~~ 937 (954)
....
T Consensus 152 ~~~l 155 (171)
T COG3153 152 DGAL 155 (171)
T ss_pred CCcc
Confidence 6433
No 74
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.52 E-value=0.00043 Score=70.73 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=65.6
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCC---eeEEeeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecchh---hhHHH
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 894 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~---~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~---eA~~~ 894 (954)
.|.++...++++||.+.|..... ..+||. +.+.++|||||+|+.++..+.+.+.. +|+.+|.+.... -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 44444445789999999876543 456766 46799999999999999999999865 899999988764 46778
Q ss_pred HHhccCcEEcCh
Q 002195 895 WTDKFGFKKIDP 906 (954)
Q Consensus 895 w~~kfGF~~i~~ 906 (954)
+++ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 888 99997654
No 75
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.40 E-value=0.0015 Score=62.16 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=62.3
Q ss_pred cEEEEEEee--CCeEEEEEEEEEe--CCeeEEeeeeEeecCcccCChhHHHHHHHHHHh-hhcCccEEEecchhh---hH
Q 002195 821 GMYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAEE---AE 892 (954)
Q Consensus 821 GfY~~VL~~--~~~vVsaA~lri~--g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l-~~lgV~~LvLpA~~e---A~ 892 (954)
|++.+++.. ++++||...++.. ....+||. +.+.++|||+|+|+.++..+.+.+ ..+|+.++......+ +.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 355555554 4579999998544 46899999 668999999999999999999998 799999998776654 45
Q ss_pred HHHHhccCcE
Q 002195 893 SIWTDKFGFK 902 (954)
Q Consensus 893 ~~w~~kfGF~ 902 (954)
.++.+ +||+
T Consensus 134 ~~~~k-~GF~ 142 (142)
T PF13302_consen 134 RLLEK-LGFE 142 (142)
T ss_dssp HHHHH-TT-E
T ss_pred HHHHH-cCCC
Confidence 56666 9985
No 76
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.39 E-value=0.00034 Score=71.69 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=63.5
Q ss_pred CCeEEEEEEEEEeC--CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcChh
Q 002195 830 NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 907 (954)
Q Consensus 830 ~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 907 (954)
+.+|||-++|--.. +..--+-.|.|.+.+||||+|+.||+..|..++..|++++.|.+.++ ..||++ +||+.-+.-
T Consensus 65 ~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-lGYe~c~Pi 142 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-LGYEKCDPI 142 (225)
T ss_pred ccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-hcccccCce
Confidence 46777777664333 35667889999999999999999999999999999999999988765 579999 999976664
Q ss_pred H
Q 002195 908 L 908 (954)
Q Consensus 908 e 908 (954)
+
T Consensus 143 ~ 143 (225)
T KOG3397|consen 143 V 143 (225)
T ss_pred e
Confidence 3
No 77
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.35 E-value=0.0012 Score=66.45 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=63.5
Q ss_pred EEeeCCeEEEEEEEEEeCC--eeEEeeeeEeecCcccCChhHHHHHHHHHHhh-hcCccEEEecchh---hhHHHHHhcc
Q 002195 826 ILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTDKF 899 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~-~lgV~~LvLpA~~---eA~~~w~~kf 899 (954)
++..++++||.+.++.... ..+|+.. .+.++|||||||+.++.++.+.+. .+|+++|.+.+.. .+..++++ +
T Consensus 71 ~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek-~ 148 (179)
T PRK10151 71 MIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR-N 148 (179)
T ss_pred EEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-C
Confidence 3346899999999876543 5688876 589999999999999999988775 5789998876543 36678887 9
Q ss_pred CcEEcChh
Q 002195 900 GFKKIDPE 907 (954)
Q Consensus 900 GF~~i~~~ 907 (954)
||+..+..
T Consensus 149 Gf~~~g~~ 156 (179)
T PRK10151 149 GFTLEGCL 156 (179)
T ss_pred CCEEEeEe
Confidence 99987653
No 78
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.18 E-value=0.00014 Score=86.95 Aligned_cols=44 Identities=39% Similarity=0.939 Sum_probs=37.1
Q ss_pred ccccccccc---CCeeccCCCCCc-cCcccCc--CCCCCCCCcccccccc
Q 002195 576 DLCTICADG---GNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 619 (954)
Q Consensus 576 d~C~vC~dg---G~Ll~CD~Cpra-fH~~CL~--l~~vP~g~W~C~~C~~ 619 (954)
--|.||.-. .-||+||.|..+ ||.+||+ +.++|-+.|||++|.-
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 449999843 349999999999 9999997 5679999999999953
No 79
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.03 E-value=0.00029 Score=75.79 Aligned_cols=47 Identities=40% Similarity=1.128 Sum_probs=37.7
Q ss_pred cCCcceecccCCCCCCCCCCCceeeCC--CcCc-ccCccccCcccCCcccCCCCCcceecCCchh
Q 002195 662 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCER-EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 662 e~~~C~IC~~~dfs~sgf~~~~LL~CD--qCer-ayHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
+..+| +|++..| +.|+.|| .|++ |||..|+ +|++.|+|.||| ++|..
T Consensus 220 e~lYC-fCqqvSy-------GqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 220 EELYC-FCQQVSY-------GQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred ceeEE-Eeccccc-------ccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 34456 5876542 5899999 7996 8899999 789999999999 78964
No 80
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.98 E-value=0.00033 Score=80.68 Aligned_cols=124 Identities=28% Similarity=0.638 Sum_probs=74.9
Q ss_pred ccccccc-----ccCCeeccCCCCCccCcccCcCC---CCCC-------CCccccccccccc-------c--ccccccc-
Q 002195 576 DLCTICA-----DGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFE-------R--KRFLQHD- 630 (954)
Q Consensus 576 d~C~vC~-----dgG~Ll~CD~CprafH~~CL~l~---~vP~-------g~W~C~~C~~~~~-------~--e~~v~~n- 630 (954)
.+|.||. |.|+++-||.|+...|-.|++.. ++|. ..|||.-|++.+. + .+.++..
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 3799997 45889999999999999999732 3333 4699999987532 1 1111110
Q ss_pred cc----ccccccccccCccccchhhhhhhhcccccc---CCcceecccCCCCCCCCCCCceeeCC--CcCcccCccccCc
Q 002195 631 AN----AVEAGRVSGVDSVEQITKRCIRIVKNLEAE---LSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 701 (954)
Q Consensus 631 ~n----a~a~g~~~gvd~ieqi~kRc~R~vkd~e~e---~~~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~ 701 (954)
.. ++.+--+.||. +.++.++|.-.+.++... ...|..|...-|.+.| ..+.|| .|..+|||+|.+.
T Consensus 200 igrWvH~iCALYvpGVa-fg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtG----vci~CdaGMCk~YfHVTCAQk 274 (707)
T KOG0957|consen 200 IGRWVHAICALYVPGVA-FGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTG----VCIRCDAGMCKEYFHVTCAQK 274 (707)
T ss_pred hhhHHHHHHHhhcCccc-cccccccccccHHHhhhhhhccchhccccchhhhhcc----eeeeccchhhhhhhhhhHHhh
Confidence 00 01111222322 123333333222223221 1239999988777654 678899 7999999999987
Q ss_pred ccC
Q 002195 702 HKM 704 (954)
Q Consensus 702 ~~~ 704 (954)
.|+
T Consensus 275 ~Gl 277 (707)
T KOG0957|consen 275 LGL 277 (707)
T ss_pred hcc
Confidence 653
No 81
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.92 E-value=0.00033 Score=77.13 Aligned_cols=39 Identities=38% Similarity=1.052 Sum_probs=36.0
Q ss_pred ccccCCeeccCC--CC-CccCcccCcCCCCCCCCcccccccc
Q 002195 581 CADGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQN 619 (954)
Q Consensus 581 C~dgG~Ll~CD~--Cp-rafH~~CL~l~~vP~g~W~C~~C~~ 619 (954)
|...|+++-||. |+ .=||..|++|...|.|.|||+.|+.
T Consensus 226 qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 226 QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 557899999997 99 7799999999999999999999985
No 82
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.89 E-value=0.00039 Score=74.77 Aligned_cols=43 Identities=42% Similarity=1.133 Sum_probs=36.4
Q ss_pred cccccccc--cCCeeccCC--CCCc-cCcccCcCCCCCCCCcccccccc
Q 002195 576 DLCTICAD--GGNLLPCDG--CPRA-FHKECASLSSIPQGDWYCKYCQN 619 (954)
Q Consensus 576 d~C~vC~d--gG~Ll~CD~--Cpra-fH~~CL~l~~vP~g~W~C~~C~~ 619 (954)
-+|+ |.. -|+++-||+ |.+- ||+.|++|...|.|.|||+.|+.
T Consensus 222 lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 222 LYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred eEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 3444 554 489999996 9877 99999999999999999999974
No 83
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.0068 Score=62.64 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred CCCceEecEEEEEEeeC-CeEEEEEEEEEeCC-----eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec-
Q 002195 814 LRGQEFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP- 886 (954)
Q Consensus 814 ~~r~df~GfY~~VL~~~-~~vVsaA~lri~g~-----~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp- 886 (954)
|....=.||+.+|++.+ |+++|=|.+-.|.. .++|. .|=+++.+||+|+|++|++++.+.+..+|++.++-.
T Consensus 44 ~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I 122 (169)
T COG1247 44 FSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGI 122 (169)
T ss_pred HHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 33333356899988765 99999998877763 34554 455899999999999999999999999999887643
Q ss_pred -chhhhHHHHHhccCcEEcChhHHHHHHHhcCceeeecCcceeeeeccc
Q 002195 887 -AAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 934 (954)
Q Consensus 887 -A~~eA~~~w~~kfGF~~i~~~el~~~~~~c~~ll~F~gt~~L~K~l~~ 934 (954)
+...|.--...+|||...+....-- ...-.|-.+..||+.|..
T Consensus 123 ~~~n~aSi~lh~~~GF~~~G~~~~vg-----~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 123 ESDNLASIALHEKLGFEEVGTFPEVG-----DKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred cCCCcHhHHHHHHCCCEEeccccccc-----cccceEEeeeeeehhhcc
Confidence 2233444455569999998844321 123445566777777644
No 84
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.74 E-value=0.00058 Score=75.25 Aligned_cols=35 Identities=40% Similarity=1.074 Sum_probs=30.8
Q ss_pred CceeeCCC--cC-cccCccccCcccCCcccCCCCCcceecCCchh
Q 002195 682 RTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 682 ~~LL~CDq--Ce-rayHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
+.|+.||. |+ .|||..|+ +|+..|.|+|||+ .|..
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYCP-RCKA 267 (274)
T ss_pred ccccccCCCCCCcceEEEecc------ccccCCCCcccch-hhhh
Confidence 58999997 99 99999999 6888899999995 8853
No 85
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.58 E-value=0.023 Score=57.72 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEee-CCeEEEEEEEEEeC-----CeeEE
Q 002195 775 PETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVFG-----QEVAE 848 (954)
Q Consensus 775 ~e~~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~-~~~vVsaA~lri~g-----~~vAE 848 (954)
.+.-.+|-.-++.|.++=+|.+- |..+|..+- |..-.|.-.+.+.++. +++++|-|.+..+= .+.--
T Consensus 14 ~~~i~rLikela~Fek~~~~v~~--te~~l~~~~-----F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iY 86 (163)
T KOG3216|consen 14 CEDILRLIKELAEFEKLEDQVEA--TEENLARDG-----FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIY 86 (163)
T ss_pred HHHHHHHHHHHHHHHHhccchhh--chhhhhhhh-----ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEE
Confidence 34445566777788887777644 444444432 3333444455555555 88999999876543 35566
Q ss_pred eeeeEeecCcccCChhHHHHHHHHHHhhhcCccEE---EecchhhhHHHHHhccCcEEcCh
Q 002195 849 LPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI---VLPAAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 849 iplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~L---vLpA~~eA~~~w~~kfGF~~i~~ 906 (954)
|-=+=++++|||+|+|+.|++.+-+.+..+|..++ ++.--.-|+.+|++ .|++..+.
T Consensus 87 leDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 87 LEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 77788999999999999999999999999998874 56666789999999 99987776
No 86
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.54 E-value=0.00092 Score=77.16 Aligned_cols=59 Identities=29% Similarity=0.750 Sum_probs=44.6
Q ss_pred CCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCC----CcceecCCc--hhhHHHHHHHh
Q 002195 663 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPK----GKWFCCMDC--SRINSVLQNLL 732 (954)
Q Consensus 663 ~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~----g~WfC~~~C--~~i~~~LqkLl 732 (954)
.-.|.||++.. +...+++||.|..-||++||.| +|..+|+ ..|.| ..| .......++++
T Consensus 544 ~ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sECdk~esSD~e~ei~ 608 (707)
T KOG0957|consen 544 NYSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SECDKNESSDSEQEII 608 (707)
T ss_pred ceeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-cccccccCcchhhhhc
Confidence 34599999864 5568899999999999999998 6777776 46999 799 33334444443
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.10 E-value=0.03 Score=61.69 Aligned_cols=77 Identities=16% Similarity=-0.016 Sum_probs=54.8
Q ss_pred eeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCh
Q 002195 828 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 828 ~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 906 (954)
..+++|||.|+-....++.+||- |+|.++|||||+++++-.++......-|+.-.|=- ...+-----.|+||+...+
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc-~N~~S~~lA~kLGf~~~~~ 247 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDC-HNLASIALAEKLGFHFDFE 247 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EE-SSHHHHHHHHHCT--EEEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeC-CCHHHHHHHHHcCCcccce
Confidence 56899999887666677788986 79999999999999999999999888888777743 2333223334699986543
No 88
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.06 E-value=0.011 Score=55.12 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=56.2
Q ss_pred EeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccE-EEec-chhhhHHHHHhccCcEEc
Q 002195 827 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS-IVLP-AAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 827 L~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~-LvLp-A~~eA~~~w~~kfGF~~i 904 (954)
|--+|.+||=.. -+..+||+.-.|.++|||||+.+.++....+.|..+|+.- ..+. +-+..+.+-.+ +||..+
T Consensus 4 lgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~~ 78 (89)
T PF08444_consen 4 LGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIFM 78 (89)
T ss_pred cCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCeec
Confidence 345688888554 4678999999999999999999999999999999999983 2222 22333444444 898877
Q ss_pred C
Q 002195 905 D 905 (954)
Q Consensus 905 ~ 905 (954)
+
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 5
No 89
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=95.95 E-value=0.034 Score=50.26 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=49.3
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEE
Q 002195 826 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI 883 (954)
Q Consensus 826 VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~L 883 (954)
.+..+|+.+|...++. ..++..|--.-|.+++||||+++.||+++.+.++.-|.+-+
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 4567788999999977 77899999999999999999999999999999999997644
No 90
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=95.91 E-value=0.058 Score=53.47 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=56.2
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch------hhhHHHH
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA------EEAESIW 895 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~------~eA~~~w 895 (954)
+|++ .-|+.++||+.+.+.|. -|+|--+.|++.=||.|+|..|++.+.+.+.. |....+.+. ..+..-+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~--i~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLPD--IKHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCCC--CcEEEEecCCCcccchHHHHHH
Confidence 6665 78999999999999775 79999999999999999999999999999954 445444433 2233344
Q ss_pred HhccCcEEcCh
Q 002195 896 TDKFGFKKIDP 906 (954)
Q Consensus 896 ~~kfGF~~i~~ 906 (954)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 44499987654
No 91
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.89 E-value=0.006 Score=61.88 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=51.4
Q ss_pred eEEeeeeEeecCcccCChhHHHHHH-HHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCh
Q 002195 846 VAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 846 vAEiplVAT~~~yRgqG~gr~L~~~-IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 906 (954)
-+.|-.+|+.++||.||++..|+.. |..+-..-=+++++|=+-+.+++||++ |||+.+++
T Consensus 101 ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 101 NIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred ceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 3788899999999999999999987 444444455678999999999999999 99999998
No 92
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=95.83 E-value=0.011 Score=49.84 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.2
Q ss_pred eEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002195 852 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 901 (954)
Q Consensus 852 VAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 901 (954)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 55566778888 888
No 93
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.79 E-value=0.0015 Score=51.10 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=20.5
Q ss_pred CCeeccCCCCCccCcccCcCCCCCCC-Cccccccc
Q 002195 585 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 618 (954)
Q Consensus 585 G~Ll~CD~CprafH~~CL~l~~vP~g-~W~C~~C~ 618 (954)
..|+.|+.|.-..|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 35899999999999999999988887 79999884
No 94
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.77 E-value=0.031 Score=61.95 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=69.7
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCc
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 901 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 901 (954)
.++++.-.++++|+|+++ .|.- |.-|||++.+||-|+.-.|+..+...+-++|...||+-+-++-..++.. +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGnv---ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGNV---IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccce---eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 344444456999999995 5643 8899999999999999999999999999999999999999999999998 999
Q ss_pred EEcChh
Q 002195 902 KKIDPE 907 (954)
Q Consensus 902 ~~i~~~ 907 (954)
..+...
T Consensus 111 ~~i~~~ 116 (352)
T COG3053 111 SEIASA 116 (352)
T ss_pred eEeecc
Confidence 999873
No 95
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.61 E-value=0.0077 Score=76.30 Aligned_cols=55 Identities=25% Similarity=0.715 Sum_probs=43.2
Q ss_pred cCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchhhHHH
Q 002195 662 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 727 (954)
Q Consensus 662 e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~i~~~ 727 (954)
+...|.||.+++.. ..+.+++||.|+.++|.+|.. .+-+|+|.|+| ..|......
T Consensus 218 ~D~~C~iC~~~~~~----n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~ 272 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQ----NSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQR 272 (1051)
T ss_pred CCccceeecccccC----CCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCc
Confidence 44679999998733 346899999999999999994 45678999999 888544433
No 96
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.60 E-value=0.028 Score=53.46 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=55.4
Q ss_pred ecEEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccE
Q 002195 820 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 882 (954)
Q Consensus 820 ~GfY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~ 882 (954)
.++|++ ..+|+.++.++..-.|.+..-|.-.-|..++||||+++.|+....+.++.-|.+-
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~ki 75 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKI 75 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeE
Confidence 457765 8899999999998889999999999999999999999999999999999999753
No 97
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.56 E-value=0.013 Score=72.10 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=48.4
Q ss_pred EEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE--ecchhhhHHHHHhccCcEEcCh
Q 002195 847 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV--LPAAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 847 AEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv--LpA~~eA~~~w~~kfGF~~i~~ 906 (954)
+.|-+|||+|++|++|||++|++.+++++. .|+..|- --+.++...||.+ -||.++-=
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 667889999999999999999999999985 3444443 3478899999999 99998754
No 98
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.52 E-value=0.0064 Score=61.41 Aligned_cols=26 Identities=42% Similarity=1.106 Sum_probs=23.1
Q ss_pred ccCccccCcccCCcccCCCCCcceecCCchh
Q 002195 693 EFHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 693 ayHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
.||+.||+| +|+++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 499999998 789999999999 68963
No 99
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.45 E-value=0.0078 Score=60.81 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.7
Q ss_pred ccCcccCc--CCCCCCCCccccccccc
Q 002195 596 AFHKECAS--LSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 596 afH~~CL~--l~~vP~g~W~C~~C~~~ 620 (954)
+||+.||+ |+.+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999996 88999999999999864
No 100
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.088 Score=51.73 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=65.9
Q ss_pred cEEEEEEeeC--CeEEEEEEEEEeC----CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecchhh---
Q 002195 821 GMYCAILTVN--SSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE--- 890 (954)
Q Consensus 821 GfY~~VL~~~--~~vVsaA~lri~g----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA~~e--- 890 (954)
+.|.++...+ +++||...+.... .+.+|+...- .+.|+|||++...+.++.+.+-. +++.++++-....
T Consensus 65 ~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~ 143 (187)
T COG1670 65 GAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEA 143 (187)
T ss_pred ceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHH
Confidence 4555555554 4999999998655 5678887766 99999999999999999888655 9999998776655
Q ss_pred hHHHHHhccCcEEcChhHH
Q 002195 891 AESIWTDKFGFKKIDPELL 909 (954)
Q Consensus 891 A~~~w~~kfGF~~i~~~el 909 (954)
+...+.+ +||+..+....
T Consensus 144 S~rv~ek-~Gf~~eg~~~~ 161 (187)
T COG1670 144 SIRVYEK-LGFRLEGELRQ 161 (187)
T ss_pred HHHHHHH-cCChhhhhhhh
Confidence 3445556 99997776443
No 101
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.38 E-value=0.008 Score=71.96 Aligned_cols=51 Identities=29% Similarity=0.983 Sum_probs=43.3
Q ss_pred cCCcceecccCCCCCCCCCCCceeeCC--CcCcccCccccCcccCCcccCCCCCcceecCCchh
Q 002195 662 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 662 e~~~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
.+++|-+|.+ .-|..++.|+.|| .|..+.|..|. .+.++|.|.||| ..|..
T Consensus 4 MVGGCCVCSD----ErGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSD----ERGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecC----cCCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 3578999985 3467788999999 79999999998 567899999999 88853
No 102
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.36 E-value=0.048 Score=57.23 Aligned_cols=84 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred EEEEEEeeCCeEEEEEEEEEeC---CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec---chhhhHHHH
Q 002195 822 MYCAILTVNSSVVSAGILRVFG---QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIW 895 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g---~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp---A~~eA~~~w 895 (954)
-|...+...+++||-+.+|.-- ..++=.-=|-+.+.|||+|+|+.|++.+|.++...+.+.++|- .-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 4555555556899999988643 3344444455667899999999999999999998888866554 445689999
Q ss_pred HhccCcEEcCh
Q 002195 896 TDKFGFKKIDP 906 (954)
Q Consensus 896 ~~kfGF~~i~~ 906 (954)
.+ +||-+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99987765
No 103
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.16 E-value=0.0059 Score=79.84 Aligned_cols=55 Identities=35% Similarity=0.834 Sum_probs=46.5
Q ss_pred ccCCcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchhhHH
Q 002195 661 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINS 726 (954)
Q Consensus 661 ~e~~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~i~~ 726 (954)
.....|.+|+..+ +...|+.|+.|..+||..|+++ .+..+|.+.||| +.|..-+.
T Consensus 1106 ~~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~ 1160 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHR 1160 (1404)
T ss_pred cchhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhh
Confidence 3446699999764 5678999999999999999998 678899999999 79987665
No 104
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=94.52 E-value=0.025 Score=70.62 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeecCCe
Q 002195 490 NASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYACGQ 535 (954)
Q Consensus 490 ~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~~gq 535 (954)
++.||+|-|||+-|+|. ||.-|++ ||+..+|+.|+||+|.|++.
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~--L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVG--LFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccCCCCccccccccceeeee--eeecCCCCCCceEEEecccc
Confidence 67889999999999999 9999999 99999999999999999874
No 105
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.30 E-value=0.038 Score=58.04 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=51.5
Q ss_pred eEEeeeeEeecCcccCChhHHHHHHHHHHhhhcC-ccEEEecc---hhhhHHHHHhccCcEEcChhH
Q 002195 846 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPA---AEEAESIWTDKFGFKKIDPEL 908 (954)
Q Consensus 846 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg-V~~LvLpA---~~eA~~~w~~kfGF~~i~~~e 908 (954)
+.-|-.++|.+.||.+|+|+.|++.+.+.+...+ .+++.|-+ -..|..||++ +||+.+....
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~~ 154 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERLK 154 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeeccc
Confidence 5778999999999999999999999999999888 66555543 3567888888 9999887633
No 106
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.39 E-value=0.02 Score=75.07 Aligned_cols=49 Identities=39% Similarity=0.944 Sum_probs=41.5
Q ss_pred cccccccccccccC---CeeccCCCCCccCcccCc--CCCCCCCCccccccccc
Q 002195 572 KDNDDLCTICADGG---NLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 572 ~~ndd~C~vC~dgG---~Ll~CD~CprafH~~CL~--l~~vP~g~W~C~~C~~~ 620 (954)
....-.|.+|...+ .++.||.|..+||.+|+. +..+|.++|+|+.|+..
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 34457799998543 589999999999999995 78999999999999864
No 107
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=93.34 E-value=0.22 Score=51.20 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=63.1
Q ss_pred EEe-eCCeEEEEEEEEEeC-----CeeEEeeeeEeecCcccCChhHHHHHHHHH-HhhhcCccEEEecch---hhhHHHH
Q 002195 826 ILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAA---EEAESIW 895 (954)
Q Consensus 826 VL~-~~~~vVsaA~lri~g-----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~-~l~~lgV~~LvLpA~---~eA~~~w 895 (954)
|.+ .+|+|||-.....+. +.-.+|-.+||...||+.|+++.||..-.+ ++...+.+.+-|... ..|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 446 578999987776665 225789999999999999999999987554 455566677777655 4589999
Q ss_pred HhccCcEEcCh
Q 002195 896 TDKFGFKKIDP 906 (954)
Q Consensus 896 ~~kfGF~~i~~ 906 (954)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 99999998765
No 108
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.81 E-value=0.04 Score=64.12 Aligned_cols=47 Identities=32% Similarity=0.839 Sum_probs=37.4
Q ss_pred CcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCc
Q 002195 664 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 721 (954)
Q Consensus 664 ~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C 721 (954)
+.|++|...+.. +.++++.||.|+-+.|..|. +..-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~~e----N~naiVfCdgC~i~VHq~CY------GI~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNE----NSNAIVFCDGCEICVHQSCY------GIQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccC----CcceEEEecCcchhhhhhcc------cceecCcchhhh-hhh
Confidence 458899876532 34689999999999999998 455679999998 555
No 109
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=92.80 E-value=0.14 Score=52.55 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=47.2
Q ss_pred eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE---ecchhhhHHHHHhccCcEEc
Q 002195 845 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV---LPAAEEAESIWTDKFGFKKI 904 (954)
Q Consensus 845 ~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv---LpA~~eA~~~w~~kfGF~~i 904 (954)
.=+++--+++.+.||++|++..||+.+|+.....+.--+. .-.-.-|+.+|++ |||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 3467788899999999999999999999998777544433 3344569999999 999763
No 110
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=92.58 E-value=0.83 Score=43.28 Aligned_cols=66 Identities=8% Similarity=-0.162 Sum_probs=56.9
Q ss_pred EEEEEEeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecch
Q 002195 822 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA 888 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~ 888 (954)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+...
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5566677899999999776655 57889999999999999999999999999999999998876553
No 111
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=92.11 E-value=1 Score=48.94 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEee-CCeEEEEEEEEEe--------------
Q 002195 778 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVF-------------- 842 (954)
Q Consensus 778 ~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~-~~~vVsaA~lri~-------------- 842 (954)
...+..|..+=++-|. +. -|.++..+---+.++...|-..-|.++... +|++||+++|...
T Consensus 16 ~~~~~~~~~lR~~VFv---~e-~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~ 91 (241)
T TIGR03694 16 PELLEEAFRLRYQVYC---EE-LGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKH 91 (241)
T ss_pred HHHHHHHHHHHHHHHH---Hh-cCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHH
Confidence 3456777777777772 11 122211100023345555555566655543 5899999998642
Q ss_pred ----------------CCeeEEeeeeEeecCcccC-C---------------------------hhHHHHHHHHHHhhhc
Q 002195 843 ----------------GQEVAELPLVATSKINHGK-G---------------------------YFQLLFACIEKLLSFL 878 (954)
Q Consensus 843 ----------------g~~vAEiplVAT~~~yRgq-G---------------------------~gr~L~~~IE~~l~~l 878 (954)
+..++|+-++|+.++||+. | +...|+.++-+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~ 171 (241)
T TIGR03694 92 CSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN 171 (241)
T ss_pred hccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHC
Confidence 1369999999999999974 2 4567999999999999
Q ss_pred CccEEEecchhhhHHHHHhccCc--EEcCh
Q 002195 879 RVKSIVLPAAEEAESIWTDKFGF--KKIDP 906 (954)
Q Consensus 879 gV~~LvLpA~~eA~~~w~~kfGF--~~i~~ 906 (954)
|+++++.-+.+....++.+ +|| +.+++
T Consensus 172 Gi~~~~~v~~~~l~r~l~r-~G~~~~~lG~ 200 (241)
T TIGR03694 172 GITHWYAIMEPRLARLLSR-FGIQFRQVGP 200 (241)
T ss_pred CCcEEEEEeCHHHHHHHHH-hCCceEEcCC
Confidence 9999998888877777765 885 45554
No 112
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=92.06 E-value=0.17 Score=57.53 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred CceEecEEEEEEeeCCeEEEEEEEEEe------CC---eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec
Q 002195 816 GQEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP 886 (954)
Q Consensus 816 r~df~GfY~~VL~~~~~vVsaA~lri~------g~---~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp 886 (954)
.+++.++|.. +.+.++++- |++. |. ..|-|-.||+.+.|||+|+-|+|+....+..++-|+.-.+|-
T Consensus 35 il~~~n~~vi--~~nqkl~s~--L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSYVI--YMNQKLASR--LHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcceEE--eehhhhhhc--ccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 3456666654 677777553 3333 33 356678899999999999999999999999999999988876
Q ss_pred chhhhHHHHHhccCcEEcCh
Q 002195 887 AAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 887 A~~eA~~~w~~kfGF~~i~~ 906 (954)
+. ..+||.+ |||..-+.
T Consensus 111 P~--s~~iYrK-fGye~asn 127 (389)
T COG4552 111 PF--SGGIYRK-FGYEYASN 127 (389)
T ss_pred cC--chhhHhh-ccccccce
Confidence 55 3678998 99987665
No 113
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.05 E-value=0.12 Score=60.43 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=45.6
Q ss_pred ecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcCh
Q 002195 855 SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 906 (954)
Q Consensus 855 ~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~ 906 (954)
...+|++|||+.||+..|+.+++-|.+++.+-+-..+..-|.+ |||...+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 5889999999999999999999999999888888788888886 99987664
No 114
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=91.80 E-value=0.08 Score=64.35 Aligned_cols=49 Identities=31% Similarity=0.815 Sum_probs=40.8
Q ss_pred CcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchh
Q 002195 664 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 723 (954)
Q Consensus 664 ~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~ 723 (954)
..|.+|+..|. ...+.|++||.|.-..|..|. ++.++|.+.|.| ..|..
T Consensus 272 viCDvCrspD~----e~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 272 VICDVCRSPDS----EEANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ceeceecCCCc----cccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhccc
Confidence 44999998762 245789999999999999998 677899999999 77753
No 115
>smart00258 SAND SAND domain.
Probab=91.71 E-value=0.14 Score=46.37 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=40.8
Q ss_pred eCCeEEeeCcCCCCceecCcchhhhcccc-ccCCccccccccCCccHHHHHHH
Q 002195 260 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (954)
Q Consensus 260 ~~~GilC~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 311 (954)
..+|+.+-|..+++ +-+||++||.|||. ++++=-..|.. ||.+|+.+++.
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 44589999998887 89999999999995 56665666654 68999998875
No 116
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=91.28 E-value=1.1 Score=47.23 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=58.8
Q ss_pred EEEEEEeeCCeEEEEEEEEEeC-------CeeEEeeeeEeecCcccCChhHHHHHHHHH-HhhhcCccEEEecchhhhHH
Q 002195 822 MYCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAAEEAES 893 (954)
Q Consensus 822 fY~~VL~~~~~vVsaA~lri~g-------~~vAEiplVAT~~~yRgqG~gr~L~~~IE~-~l~~lgV~~LvLpA~~eA~~ 893 (954)
||.+++.--+.+|++..+-.+- ..+--+.+.=+.++|||+|+++ |+..+.. .+.. +=...++-+...+..
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~ 124 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSN 124 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHH
Confidence 3444444446688776664322 2377788888999999999996 5555554 4444 335567778889999
Q ss_pred HHHhccCcEEcCh
Q 002195 894 IWTDKFGFKKIDP 906 (954)
Q Consensus 894 ~w~~kfGF~~i~~ 906 (954)
+|.+-|||..++.
T Consensus 125 ~w~k~~G~~~~~h 137 (181)
T PF06852_consen 125 FWHKMFGFDDYGH 137 (181)
T ss_pred HHHHHhCCCCCcc
Confidence 9999999988887
No 117
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=91.26 E-value=0.11 Score=66.17 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeecCC------eeeccCcccCCCcc
Q 002195 488 FENASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYACG------QKLLEGYKNGLGII 548 (954)
Q Consensus 488 ~~~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~~g------q~ll~G~~~~~GI~ 548 (954)
+-.+.||+|.|||...=++ .+|.++. +|+-..|..|+||||.|+= -.|+||..++.|++
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~Iv--Iyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIV--IYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFL 1004 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEE--EEEecccccCceeeeeccccccccccccccCCCcccccc
Confidence 4467899999999988887 8888888 9999999999999999972 26889988877653
No 118
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=90.57 E-value=0.045 Score=42.88 Aligned_cols=33 Identities=36% Similarity=1.110 Sum_probs=17.3
Q ss_pred CceeeCCCcCcccCccccCcccCCcccCCCCC-cceecCCc
Q 002195 682 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 721 (954)
Q Consensus 682 ~~LL~CDqCerayHv~CL~~~~~~~LkelP~g-~WfC~~~C 721 (954)
+.|+.|+.|.-..|..|.. ....|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4799999999999999984 3344444 7999 444
No 119
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=90.07 E-value=0.095 Score=61.54 Aligned_cols=45 Identities=31% Similarity=0.905 Sum_probs=36.0
Q ss_pred ccccccccc-----CCeeccCCCCCccCcccCc------CCCCCCCCccccccccc
Q 002195 576 DLCTICADG-----GNLLPCDGCPRAFHKECAS------LSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 576 d~C~vC~dg-----G~Ll~CD~CprafH~~CL~------l~~vP~g~W~C~~C~~~ 620 (954)
-.|.+|..| .++|.|++|..-||+.|+. +..-|.+.|||..|...
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 449999854 3699999999999999995 22346788999999864
No 120
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=89.87 E-value=0.11 Score=47.76 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.4
Q ss_pred eeEEEe-----CCeEEeeCcCCCCceecCcchhhhccccc-cCCccccccccCCccHHHHHHH
Q 002195 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQYICFENGKSLLEVLRA 311 (954)
Q Consensus 255 l~G~i~-----~~GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~~I~lenG~sL~~v~~~ 311 (954)
++|++. ..|+...|-.++ .+-+||.+||.|||.. +|+=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 356655 445566677777 5799999999999985 4556667777 89999998875
No 121
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=87.54 E-value=3.3 Score=43.39 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceE-ecEEEEEEeeCCeEEEEEEEEEeC-------------
Q 002195 778 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILRVFG------------- 843 (954)
Q Consensus 778 ~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df-~GfY~~VL~~~~~vVsaA~lri~g------------- 843 (954)
...|.+....=|+.|. | +=|=|+ + ..-|.++...|- .-.|.+++. +|+++|+++|....
T Consensus 7 ~~~l~~~~rlR~~vFv---~-rlgW~v-~-~~dg~E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll 79 (182)
T PF00765_consen 7 RRLLEEMFRLRHRVFV---D-RLGWDV-P-CEDGMEIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLL 79 (182)
T ss_dssp HHHHHHHHHHHHHHHT---T-CSCCCH-H-CCTSEE--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGH
T ss_pred HHHHHHHHHHHHHHHH---H-hhCCCC-c-CCCCcEeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHh
Confidence 3445555555566662 1 112231 2 112344444442 347877665 59999999987544
Q ss_pred --------CeeEEeeeeEeecCccc------CChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002195 844 --------QEVAELPLVATSKINHG------KGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 903 (954)
Q Consensus 844 --------~~vAEiplVAT~~~yRg------qG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 903 (954)
.+++|+-+++++++.++ .-+...|+.++-+.+.+.|+++++.-+..-.+.++.+ +||..
T Consensus 80 ~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~ 152 (182)
T PF00765_consen 80 PDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRR-AGWPV 152 (182)
T ss_dssp TTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHH-CT-EE
T ss_pred CCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHH-cCCce
Confidence 57999999999988542 2367899999999999999999998887777777777 88874
No 122
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=87.19 E-value=0.34 Score=44.50 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeec
Q 002195 490 NASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYA 532 (954)
Q Consensus 490 ~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~ 532 (954)
.++||+|.||+....+. .++.++. +++..+|+.|+||++.|
T Consensus 75 ~~iNHsc~pN~~~~~~~~~~~~~~~--~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 75 RFINHSCEPNCELLFVEVNGDSRIV--IFALRDIKPGEELTIDY 116 (116)
T ss_pred HeeCCCCCCCEEEEEEEECCCcEEE--EEECCCcCCCCEEeecC
Confidence 57899999999966554 3333566 89999999999998764
No 123
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=86.70 E-value=1.3 Score=46.28 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=54.0
Q ss_pred cEEEEEEeeCCeEEEEEEEEEeCCe-----eEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh
Q 002195 821 GMYCAILTVNSSVVSAGILRVFGQE-----VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 890 (954)
Q Consensus 821 GfY~~VL~~~~~vVsaA~lri~g~~-----vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e 890 (954)
-.|-+|-+ ++++||.-.||-.=.+ ..+|. -+|+|+.||+||++..+.-..+.++.+|++.+.+-+..+
T Consensus 69 ~~y~~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 69 STYWAVDE-DGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred eeEEEEec-CCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 35666656 8999999999864432 12221 359999999999999999999999999999999887754
No 124
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=86.32 E-value=3.8 Score=43.72 Aligned_cols=119 Identities=18% Similarity=0.088 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEe-cEEEEEEeeCCeEEEEEEEEEe--------------
Q 002195 778 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFG-GMYCAILTVNSSVVSAGILRVF-------------- 842 (954)
Q Consensus 778 ~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~-GfY~~VL~~~~~vVsaA~lri~-------------- 842 (954)
...+.++...=|+.|. + +=|=++ +. --|.++..+|.. -.|.+....+|++||+++|-..
T Consensus 15 ~~~l~~~~rLR~~VF~---~-elgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~ 88 (207)
T PRK13834 15 ASLLKQMHRLRARVFG---G-RLGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLL 88 (207)
T ss_pred HHHHHHHHHHHHHHhc---c-ccCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhc
Confidence 3456777777777773 1 112222 11 123344445433 3566666678899999987221
Q ss_pred -------CCeeEEeeeeEeecCcc---cCC----hhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002195 843 -------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 903 (954)
Q Consensus 843 -------g~~vAEiplVAT~~~yR---gqG----~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 903 (954)
..+++|+-++|++++++ +.+ +...|+..+-+.+...|+++++.-...-...++.+ +||..
T Consensus 89 ~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 89 PAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 25799999999999863 222 55789999999999999999987777666666655 88653
No 125
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=85.91 E-value=1.1 Score=49.97 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=48.3
Q ss_pred CCCchhhhhhhcCCCCCceEEEecCCcccccceeEEEeCC------eEEeeCcCCCCceecCcchhhhccccc-cCCccc
Q 002195 223 KKPMTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRDG------GILCSCSLCNGCRVIPPSKFEIHACKQ-YRRASQ 295 (954)
Q Consensus 223 ~~p~~vk~Ll~tGlleg~~V~Y~~~~~~~~~~l~G~i~~~------GilC~C~~C~~~~v~s~s~FE~HAG~~-~~~p~~ 295 (954)
..+++...-..+.+++.+|-.+-.+..-++....|+.+.- -|+|-|- -.-+||.+|=.|||.. .-||-.
T Consensus 206 ~~~~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~ 281 (284)
T PF07897_consen 206 SPRTNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLR 281 (284)
T ss_pred cccccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchh
Confidence 3445555556666777777666543222344556766544 2888886 4589999999999985 568999
Q ss_pred cc
Q 002195 296 YI 297 (954)
Q Consensus 296 ~I 297 (954)
||
T Consensus 282 hi 283 (284)
T PF07897_consen 282 HI 283 (284)
T ss_pred cc
Confidence 98
No 126
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=85.23 E-value=0.38 Score=57.13 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeecCCe
Q 002195 489 ENASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYACGQ 535 (954)
Q Consensus 489 ~~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~~gq 535 (954)
..++||+|+|++++++|+ .+|+++. +|++..+|+|+|++|.+++.
T Consensus 372 sr~~nh~~~~~v~~~k~~~~~~t~~~--~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 372 SRFLNHSCQPNVETEKWQVIGDTRVG--LFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred hhhhcccCCCceeechhheecccccc--cccccccccchhhhheeecc
Confidence 357899999999999999 9999999 99999999999999999874
No 127
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=84.08 E-value=2.3 Score=40.62 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.5
Q ss_pred eeCCeEEEEEEEEEeC--CeeEEeeeeEeecCcccCChhHHHHHHHHHHh
Q 002195 828 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 875 (954)
Q Consensus 828 ~~~~~vVsaA~lri~g--~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l 875 (954)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+++|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5567788888887655 58999999999999999999999999998773
No 128
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=76.18 E-value=1.1 Score=42.50 Aligned_cols=33 Identities=24% Similarity=0.687 Sum_probs=27.4
Q ss_pred CcceecccCCCCCCCCCCCceeeCCC--cCcccCccccCcccC
Q 002195 664 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHKM 704 (954)
Q Consensus 664 ~~C~IC~~~dfs~sgf~~~~LL~CDq--CerayHv~CL~~~~~ 704 (954)
..|.+|+.. .+..+.|.. |.++||+.|....+.
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 459999974 357999998 999999999987653
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=75.58 E-value=8.4 Score=43.28 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=62.2
Q ss_pred EEEe-eCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHH--HHHhccCc
Q 002195 825 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES--IWTDKFGF 901 (954)
Q Consensus 825 ~VL~-~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~--~w~~kfGF 901 (954)
++++ .+|++|+++.+..+++. +.....|+.++||+.+-.-.|+-.+.+.+.+.|++++-+.....-.+ .++++|||
T Consensus 198 ~~a~~~~g~~va~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~ 276 (330)
T TIGR03019 198 LTVRLGDGVVASAVLSFYFRDE-VLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGF 276 (330)
T ss_pred EEEEeCCCCEEEEEEEEEeCCE-EEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCC
Confidence 4456 68999998887666654 44557889999999999999999999999999999999876533223 36667899
Q ss_pred EEcC
Q 002195 902 KKID 905 (954)
Q Consensus 902 ~~i~ 905 (954)
++..
T Consensus 277 ~~~~ 280 (330)
T TIGR03019 277 EPQP 280 (330)
T ss_pred eecc
Confidence 8654
No 130
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=75.09 E-value=5.9 Score=37.92 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=38.6
Q ss_pred eeCCeEEEEEEEEEeC-CeeEEeeeeEeecCcccCChhHHHHHHHHHHh
Q 002195 828 TVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLL 875 (954)
Q Consensus 828 ~~~~~vVsaA~lri~g-~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l 875 (954)
+.++..=++|.+..-. .+++-|-.+|+.+..||+|+++.|+++|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 3445556666665443 47999999999999999999999999998874
No 131
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=74.56 E-value=1.7 Score=56.53 Aligned_cols=52 Identities=33% Similarity=0.709 Sum_probs=34.5
Q ss_pred CccccccccccccccC-CeeccC--CCCCccCcccCc--C------CCCCCCCcccccccccc
Q 002195 570 PGKDNDDLCTICADGG-NLLPCD--GCPRAFHKECAS--L------SSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 570 ~~~~ndd~C~vC~dgG-~Ll~CD--~CprafH~~CL~--l------~~vP~g~W~C~~C~~~~ 621 (954)
..++.||+|.+|-... ..--|- +|.+.||+.|.. + +.+.-|--.||.|++++
T Consensus 3481 tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 4567889999997431 111222 699999999973 2 22333456899999875
No 132
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=74.48 E-value=4.5 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=43.7
Q ss_pred eEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHh
Q 002195 846 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 897 (954)
Q Consensus 846 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~ 897 (954)
+||+.+.|++++.+|.|++..+ ..+--.|+.|||.--|--.........++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 8999999999999999999976 68888999999997776666666666666
No 133
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=72.96 E-value=2.8 Score=49.96 Aligned_cols=61 Identities=23% Similarity=0.549 Sum_probs=46.0
Q ss_pred CcccccccCCCCCccccccccccccccCCeeccCCCCCccCcccCcCCCCCCCCcccccccc
Q 002195 558 PSQFEAHAGRQYPGKDNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 619 (954)
Q Consensus 558 Ps~FE~hag~k~~~~~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~ 619 (954)
|..+....+-+.-...+.++|++|.+||.+++|+.|..++|..|... ..|+..|.|..|..
T Consensus 72 p~~~~~~~~~~~~~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 72 PNHVSPEPGSRRHPKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred ccccCCCCCchhccCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 45554444433344567799999999999999999999999999864 46677788777764
No 134
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=72.62 E-value=1.3 Score=41.34 Aligned_cols=30 Identities=23% Similarity=0.570 Sum_probs=21.9
Q ss_pred CCCCccCcccCc-CCCCCCCCcccccccccc
Q 002195 592 GCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 592 ~CprafH~~CL~-l~~vP~g~W~C~~C~~~~ 621 (954)
.|.+.||.-|+. +.+-....-.||.|+..+
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 499999999995 333333456999999754
No 135
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=72.05 E-value=1.6 Score=39.72 Aligned_cols=31 Identities=32% Similarity=0.813 Sum_probs=25.6
Q ss_pred cceecccCCCCCCCCCCCceeeCCC--cCcccCccccCccc
Q 002195 665 GCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 703 (954)
Q Consensus 665 ~C~IC~~~dfs~sgf~~~~LL~CDq--CerayHv~CL~~~~ 703 (954)
.|.+|+.. .+..+.|.. |.+.||+.|....+
T Consensus 38 ~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 38 KCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 49999964 147899995 99999999998764
No 136
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=68.21 E-value=5.7 Score=46.93 Aligned_cols=55 Identities=22% Similarity=0.533 Sum_probs=35.6
Q ss_pred ceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCc---ccCC----CCCcceecCCchhh
Q 002195 666 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD---LREL----PKGKWFCCMDCSRI 724 (954)
Q Consensus 666 C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~---Lkel----P~g~WfC~~~C~~i 724 (954)
|.+|++.|++. ++=..+.||.|..|.|++|.=.+.+.. ...- .+..++| ..|.+.
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~ 192 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKT 192 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCCh
Confidence 78888876543 344689999999999999965544321 1111 1235666 889654
No 137
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.64 E-value=2.9 Score=47.99 Aligned_cols=43 Identities=30% Similarity=0.765 Sum_probs=31.7
Q ss_pred ccccccccc---CCeeccCCCCCccCcccCc--CCCCCCCCcccccccccc
Q 002195 576 DLCTICADG---GNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 576 d~C~vC~dg---G~Ll~CD~CprafH~~CL~--l~~vP~g~W~C~~C~~~~ 621 (954)
+.|.||.+. |+.+.-=-|.+.||..|++ +.+. .-+||.|+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 699999964 5555446799999999997 2222 34799999754
No 138
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=64.66 E-value=4 Score=36.45 Aligned_cols=46 Identities=30% Similarity=0.592 Sum_probs=18.2
Q ss_pred cccccccc----cCC--eeccC--CCCCccCcccCc-----CCC----CCCCCcccccccccc
Q 002195 576 DLCTICAD----GGN--LLPCD--GCPRAFHKECAS-----LSS----IPQGDWYCKYCQNMF 621 (954)
Q Consensus 576 d~C~vC~d----gG~--Ll~CD--~CprafH~~CL~-----l~~----vP~g~W~C~~C~~~~ 621 (954)
..|.||.. .++ .+.|+ .|...||..||. ++. ..--.+.||.|...+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 46888873 233 47898 799999999993 111 111236799998754
No 139
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=64.65 E-value=0.53 Score=37.65 Aligned_cols=39 Identities=28% Similarity=0.790 Sum_probs=24.3
Q ss_pred ccccccccc---C-CeeccCCCCCccCcccCc-CCCCCCCCccccccc
Q 002195 576 DLCTICADG---G-NLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQ 618 (954)
Q Consensus 576 d~C~vC~dg---G-~Ll~CD~CprafH~~CL~-l~~vP~g~W~C~~C~ 618 (954)
|.|.||.+. + .++... |.+.||..|+. +- .....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~---~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWL---KRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHH---HHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHH---HhCCcCCccC
Confidence 468888853 3 344444 99999999995 21 1134888885
No 140
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=63.70 E-value=0.95 Score=40.57 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=17.5
Q ss_pred CCCCCccCcccCcCCCCCCCCccccccc
Q 002195 591 DGCPRAFHKECASLSSIPQGDWYCKYCQ 618 (954)
Q Consensus 591 D~CprafH~~CL~l~~vP~g~W~C~~C~ 618 (954)
..|++.||..|+. ++-.....||.|+
T Consensus 48 ~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred cccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 3599999999995 1222344899985
No 141
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=63.17 E-value=15 Score=39.04 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEeeCCe--EEEEEEEEEeCCeeEEeeeeEeec
Q 002195 779 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSS--VVSAGILRVFGQEVAELPLVATSK 856 (954)
Q Consensus 779 skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~~~~--vVsaA~lri~g~~vAEiplVAT~~ 856 (954)
....+-|-.|-..| +|++|=- |. .+---||++.-.+++. +||-=+=--...+--.|--|-|.|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Ktly-------yd-----v~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~lP 90 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKTLY-------YD-----VDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILTLP 90 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGCCT-------T------STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE-G
T ss_pred chHHHHHHHHHHHH---hhCeEEE-------ee-----cCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhhcc
Confidence 55688888888999 3443321 11 1112255554444433 222222111112234677788999
Q ss_pred CcccCChhHHHHHHHHHHhhh
Q 002195 857 INHGKGYFQLLFACIEKLLSF 877 (954)
Q Consensus 857 ~yRgqG~gr~L~~~IE~~l~~ 877 (954)
.||++|||+.|++.-=.+.+.
T Consensus 91 ~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 91 PYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp GGTTSSHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhhhhHHHHhhc
Confidence 999999999999875555443
No 142
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=62.19 E-value=20 Score=36.25 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=45.5
Q ss_pred eeEeecCcccCChhHHHHHHHHHHhhhcCccEEEec----chhhhHHHHHhccCcEEcChhHHH
Q 002195 851 LVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPELLS 910 (954)
Q Consensus 851 lVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLp----A~~eA~~~w~~kfGF~~i~~~el~ 910 (954)
+|.|-...||.|.+|+|.+.+-..+..-|-.+|++- --.+|...+...|||+++++.++.
T Consensus 89 RvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 89 RVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 333444569999999999999999999988887753 233456667777999999986543
No 143
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=59.92 E-value=6.2 Score=34.00 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=27.4
Q ss_pred CcceecccCCCCCCCCCCCceeeCCCcCcccCccccCccc
Q 002195 664 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHK 703 (954)
Q Consensus 664 ~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~ 703 (954)
..|.+|++.= ...+.++.|..|...||-.|....+
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCC
Confidence 4599999752 1356899999999999999986643
No 144
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=59.24 E-value=30 Score=34.68 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=55.0
Q ss_pred EEEEeeCCeEEEEEEEE--EeC-----CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHH
Q 002195 824 CAILTVNSSVVSAGILR--VFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 896 (954)
Q Consensus 824 ~~VL~~~~~vVsaA~lr--i~g-----~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~ 896 (954)
.++...+|.+||-|.+- ++. -.++|+ -+...|||+||||+..++|-.+...+ -+-.+++--..|..||+
T Consensus 39 ~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~ef---FIi~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 39 AWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEF---FIVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK 114 (143)
T ss_pred eeEEEECCceeeeeeeecccCCCCcccccchhe---EeeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH
Confidence 34456789999988752 221 234444 34557999999999999998875433 34567888888999999
Q ss_pred hccCcE-EcChhHHH
Q 002195 897 DKFGFK-KIDPELLS 910 (954)
Q Consensus 897 ~kfGF~-~i~~~el~ 910 (954)
+ +-+. .+..++..
T Consensus 115 ~-~~~t~~i~~E~r~ 128 (143)
T COG5628 115 R-VAETYPVVEEDRQ 128 (143)
T ss_pred h-hhcccccchhhhh
Confidence 9 5333 33444443
No 145
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=57.86 E-value=5 Score=46.26 Aligned_cols=47 Identities=13% Similarity=-0.089 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCCCCCccc---cCccccchhhcccCCCCCCCeeeeecCC
Q 002195 488 FENASPPLSFPNKSRWNIT---PKDQRLHKLVFDESGLPDGTEVGYYACG 534 (954)
Q Consensus 488 ~~~~~~~~~~pn~~~~k~t---~~D~rlhklLF~~~~LpdGtel~Y~~~g 534 (954)
+..++||+|+||-.-+... ..-.-+|-.+|+...|+.++||||.+..
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~ 321 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK 321 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence 3468999999999855443 4455677789999999999999998864
No 146
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=57.42 E-value=5.2 Score=34.47 Aligned_cols=28 Identities=29% Similarity=0.975 Sum_probs=24.0
Q ss_pred ccccccc----ccCCeeccCCCCCccCcccCc
Q 002195 576 DLCTICA----DGGNLLPCDGCPRAFHKECAS 603 (954)
Q Consensus 576 d~C~vC~----dgG~Ll~CD~CprafH~~CL~ 603 (954)
..|.+|+ ++++++.|..|...||..|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4588888 478899999999999999983
No 147
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=57.21 E-value=20 Score=33.63 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred CeeEEeeeeEeecCcccCChhHHHH
Q 002195 844 QEVAELPLVATSKINHGKGYFQLLF 868 (954)
Q Consensus 844 ~~vAEiplVAT~~~yRgqG~gr~L~ 868 (954)
..++||.++|+.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 4789999999999999998877764
No 148
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=56.17 E-value=80 Score=33.02 Aligned_cols=110 Identities=14% Similarity=0.234 Sum_probs=70.3
Q ss_pred cceeeEcCCCCCChhhHHHHHHHHHHhhhcCCCcccCCCCCCccccccccccC-----CCceEecEEEEEEee--CCeEE
Q 002195 762 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSVV 834 (954)
Q Consensus 762 ~ikW~lLsgk~~s~e~~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~-----~r~df~GfY~~VL~~--~~~vV 834 (954)
.|.|..+.= ++...|.+.-..+.+-+.- | .|-.-..-|+.+| .--+|.-.|.+.+.. .+++|
T Consensus 23 gF~W~~~dl-----~d~~~l~ely~lL~~nYVE--D----dd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLv 91 (162)
T PF01233_consen 23 GFEWSTLDL-----NDDEELKELYELLNENYVE--D----DDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLV 91 (162)
T ss_dssp TEEEEE--T-----TSHHHHHHHHHHHHHHSSB--T----TTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEE
T ss_pred CCEEEecCC-----CCHHHHHHHHHHHHhcCcc--C----CcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEE
Confidence 689998642 2345567777777777722 1 1222235566554 333444455555553 57777
Q ss_pred E-----EEEEEEeCC--eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccE
Q 002195 835 S-----AGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 882 (954)
Q Consensus 835 s-----aA~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~ 882 (954)
| -+.+||.+. ..+||=++.+++.+|.+++.=.|+.+|=+.+-..||-.
T Consensus 92 gfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 92 GFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 6 357888875 79999999999999999999999999999988888754
No 149
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=53.88 E-value=27 Score=36.16 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=38.5
Q ss_pred eEEeeeeEeecCcccCChhHHHHHHHHHHhhh-cCccEEEecc--hhhh-HHHHHhccCcEEc
Q 002195 846 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA--AEEA-ESIWTDKFGFKKI 904 (954)
Q Consensus 846 vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~-lgV~~LvLpA--~~eA-~~~w~~kfGF~~i 904 (954)
++|+.+.---|..||+|||+..|.++...+.+ +++....+-. +..+ ..++. ||+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheee
Confidence 45666666779999999999999998887544 4555544443 2222 33444 4888754
No 150
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=53.79 E-value=7.2 Score=50.34 Aligned_cols=45 Identities=27% Similarity=0.748 Sum_probs=38.2
Q ss_pred CcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCch
Q 002195 664 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 722 (954)
Q Consensus 664 ~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~ 722 (954)
.+|.+|++. +.++.|..|++-||..|+.+ ++.+.|...|-| ..|.
T Consensus 345 dhcrf~~d~---------~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHDL---------GDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCcc---------cceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 459999854 47899999999999999987 677889999999 6774
No 151
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=52.83 E-value=10 Score=34.26 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.2
Q ss_pred eeeeEeecCcccCChhHHHHHHHHHHh
Q 002195 849 LPLVATSKINHGKGYFQLLFACIEKLL 875 (954)
Q Consensus 849 iplVAT~~~yRgqG~gr~L~~~IE~~l 875 (954)
|.+|=|.+.+||+|++++||+++-+..
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 566778999999999999999987753
No 152
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=52.52 E-value=14 Score=46.05 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.2
Q ss_pred EEeeeeEeecCcccCChhHHHHHHHHHH
Q 002195 847 AELPLVATSKINHGKGYFQLLFACIEKL 874 (954)
Q Consensus 847 AEiplVAT~~~yRgqG~gr~L~~~IE~~ 874 (954)
|.|-+|||+|+|++-|||.+-++-+.+.
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y 642 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDY 642 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHH
Confidence 6678899999999999999888777764
No 153
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=52.05 E-value=17 Score=41.77 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred cCcccCChhHHHHHHHHHHhhhc-CccEEEecchhhhHHHHHhccCcEEcChh
Q 002195 856 KINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDPE 907 (954)
Q Consensus 856 ~~yRgqG~gr~L~~~IE~~l~~l-gV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 907 (954)
..||.||||..||++.|+.+++- |-..+-+-+-......|.+ |||..-++-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecChh
Confidence 36999999999999999998865 4456665556666677777 999876653
No 154
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=50.76 E-value=22 Score=40.12 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=25.3
Q ss_pred EEeeeeEeecCcccCChhHHHHHHHHHHhhhcC
Q 002195 847 AELPLVATSKINHGKGYFQLLFACIEKLLSFLR 879 (954)
Q Consensus 847 AEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lg 879 (954)
-.|--|-|.|.||++|||+.|++.-=++.+.-|
T Consensus 156 nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 156 YNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 347778899999999999999986555444333
No 155
>PRK00756 acyltransferase NodA; Provisional
Probab=49.82 E-value=25 Score=36.92 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=34.2
Q ss_pred eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002195 845 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 884 (954)
Q Consensus 845 ~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 884 (954)
=+||+.+.|++++..|.|++..+ ..+--.|++|||.--|
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 38999999999999999999876 6888899999998544
No 156
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=48.41 E-value=10 Score=39.68 Aligned_cols=34 Identities=21% Similarity=0.521 Sum_probs=25.3
Q ss_pred ceecccCCCCCCCCCCCceeeCCCcCcccCccccCcc
Q 002195 666 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 702 (954)
Q Consensus 666 C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~ 702 (954)
|..|...+. +...+.|+.|..|..+||..||-+.
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCc
Confidence 777864321 1235689999999999999999764
No 157
>PHA02929 N1R/p28-like protein; Provisional
Probab=47.02 E-value=6.3 Score=43.26 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=31.5
Q ss_pred ccccccccccccCC--------eeccCCCCCccCcccCcCCCCCCCCcccccccccc
Q 002195 573 DNDDLCTICADGGN--------LLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 573 ~ndd~C~vC~dgG~--------Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~~ 621 (954)
..+..|.+|.+.-. ...-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 34678999987521 12234799999999995 1222345799999754
No 158
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=46.61 E-value=23 Score=37.81 Aligned_cols=70 Identities=20% Similarity=0.431 Sum_probs=46.5
Q ss_pred CccccccccCCc-cHHHHHHHccCCCchhHHHHHhh-------------------------hhcCCCccCceeecccCCc
Q 002195 292 RASQYICFENGK-SLLEVLRACRSVPLPMLKATLQS-------------------------ALSSLPEEKSFACVRCKGT 345 (954)
Q Consensus 292 ~p~~~I~lenG~-sL~~v~~~~k~~~l~~l~~~I~~-------------------------~ig~~~~~~~~~C~~Ck~s 345 (954)
.+.+|++-+... ||.|+++--.+.=+..|+.+++. +|=+.-....++|.+|++-
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v 181 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVKSGQLLPQLEKLVQFAEKHVYSCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSV 181 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHhhchHHHHHHHHHHHHHHHHHHhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccc
Confidence 567887655444 99999888766655556555443 2212222367788888888
Q ss_pred ccccccCCCCCCCCCCcccc
Q 002195 346 FPITCVGKTGPGPLCNSCVK 365 (954)
Q Consensus 346 ~~~~~~~~~~~~~~C~~C~~ 365 (954)
||..|.... .|+.|.-
T Consensus 182 ~H~~C~~~~----~CpkC~R 197 (202)
T PF13901_consen 182 FHKSCFRKK----SCPKCAR 197 (202)
T ss_pred cchhhcCCC----CCCCcHh
Confidence 888888752 3888865
No 159
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.51 E-value=29 Score=42.61 Aligned_cols=94 Identities=17% Similarity=0.337 Sum_probs=48.7
Q ss_pred CcceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCC----cccCCCCCcceecCCchhhHHHHHHHhhhccc-c
Q 002195 664 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMA----DLRELPKGKWFCCMDCSRINSVLQNLLVQEAE-K 738 (954)
Q Consensus 664 ~~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~----~LkelP~g~WfC~~~C~~i~~~LqkLla~g~e-~ 738 (954)
+.|..|+..+ .++ =.|+.|++.|+..+|..+.-. ...-.++..||= .=......|.+.+...++ .
T Consensus 143 g~cp~cg~~~-----arG---D~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf--~L~~~~~~L~~~~~~~~~~~ 212 (558)
T COG0143 143 GTCPKCGGED-----ARG---DQCENCGRTLDPTELINPVCVISGATPEVREEEHYFF--RLSKFQDKLLEWYESNPDFI 212 (558)
T ss_pred ccCCCcCccc-----cCc---chhhhccCcCCchhcCCCeeEeeCCCcccccceeEEE--EHHHhHHHHHHHHHhCcccc
Confidence 4588888543 111 269999999999887442100 000111344554 233445555555554442 3
Q ss_pred CchhHHHHhhhhhcCcccc--cccccceeeE
Q 002195 739 LPEFHLNAIKKYAGNSLET--VSDIDVRWRL 767 (954)
Q Consensus 739 lp~sll~~Ikk~~e~gle~--~~~~~ikW~l 767 (954)
.|.+..+.+.+..+.|+.. .++.++.|=+
T Consensus 213 ~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 213 WPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 5666655554444455543 2333566654
No 160
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.93 E-value=1.9 Score=39.46 Aligned_cols=53 Identities=26% Similarity=0.561 Sum_probs=35.5
Q ss_pred CCCcccccccccccccc-----------CC---eeccCCCCCccCcccCc-CCCCCCCCcccccccccc
Q 002195 568 QYPGKDNDDLCTICADG-----------GN---LLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 568 k~~~~~ndd~C~vC~dg-----------G~---Ll~CD~CprafH~~CL~-l~~vP~g~W~C~~C~~~~ 621 (954)
.+.|+.+++.|.+|+-. |+ |++- .|.++||.-|+. +-..|...-.||.|+..+
T Consensus 13 ~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 13 WWTWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred EEEEcCCCCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 35667777788888732 21 2221 355789999984 555666678999999764
No 161
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=44.68 E-value=7 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.567 Sum_probs=27.1
Q ss_pred cccccccC-CeeccCCCCCccCcccCc-CCCCCCCCcccccccc
Q 002195 578 CTICADGG-NLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQN 619 (954)
Q Consensus 578 C~vC~dgG-~Ll~CD~CprafH~~CL~-l~~vP~g~W~C~~C~~ 619 (954)
|.+|.+.- +......|.+.||..|+. +.. .+...||.|+.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~--~~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLK--SGKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHH--hCcCCCCCCCC
Confidence 77787654 444445699999999995 211 14677999974
No 162
>PRK14852 hypothetical protein; Provisional
Probab=44.33 E-value=63 Score=42.25 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=53.7
Q ss_pred CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEEcChh
Q 002195 844 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 907 (954)
Q Consensus 844 ~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~i~~~ 907 (954)
..++|+-.+|+++..|.+-+--.|+..+-+.+...++..+++---+.=..||++-|||+.+++.
T Consensus 119 r~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 119 RNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 5799999999988777766555666766565667899999999999999999999999999863
No 163
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=44.32 E-value=9.8 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.692 Sum_probs=15.0
Q ss_pred ccccccccc--CCeeccCCCCCccCcccC
Q 002195 576 DLCTICADG--GNLLPCDGCPRAFHKECA 602 (954)
Q Consensus 576 d~C~vC~dg--G~Ll~CD~CprafH~~CL 602 (954)
+.|.+|+.. +.+| .-|+++||..|.
T Consensus 335 ekC~~Cg~~I~d~iL--rA~GkayHp~CF 361 (468)
T KOG1701|consen 335 EKCNKCGEPIMDRIL--RALGKAYHPGCF 361 (468)
T ss_pred HHHhhhhhHHHHHHH--HhcccccCCCce
Confidence 446666543 1122 347899999986
No 164
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=43.93 E-value=61 Score=37.72 Aligned_cols=134 Identities=17% Similarity=0.301 Sum_probs=92.1
Q ss_pred cceeeEcCCCCCChhhHHHHHHHHHHhhhcCCCcccCCCCCCcccccccccc-----CCCceEecEEEEEEeeC--CeEE
Q 002195 762 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRN-----LRGQEFGGMYCAILTVN--SSVV 834 (954)
Q Consensus 762 ~ikW~lLsgk~~s~e~~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~-----~~r~df~GfY~~VL~~~--~~vV 834 (954)
.+.|..+- ..+...|.+..+.+.|-+.- | +|..-..-|..+ +..-++.--|++.+... .++|
T Consensus 80 gf~W~tld-----v~~~~~l~el~~lL~enyVE--d----~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLV 148 (421)
T KOG2779|consen 80 GFRWETLD-----VSDFKDLEELYNLLNENYVE--D----DDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLV 148 (421)
T ss_pred CceeeccC-----CccHhHHHHHHhhcccCCCC--c----cccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceE
Confidence 57888763 22334466666677776522 2 233333345444 34555666777777764 4666
Q ss_pred EE-----EEEEEeCC--eeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCcc------EEEecchhhhHHHHHhcc--
Q 002195 835 SA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDKF-- 899 (954)
Q Consensus 835 sa-----A~lri~g~--~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~------~LvLpA~~eA~~~w~~kf-- 899 (954)
+- ++|||.+. ..+||-++.+++..|++++.=.|+.+|-+...--||- -++||+-...-.-|.+.+
T Consensus 149 aFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsLNp 228 (421)
T KOG2779|consen 149 AFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSLNP 228 (421)
T ss_pred EEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccCCh
Confidence 63 57888886 6899999999999999999999999998876655553 478888877777887743
Q ss_pred ------CcEEcCh
Q 002195 900 ------GFKKIDP 906 (954)
Q Consensus 900 ------GF~~i~~ 906 (954)
||+.++.
T Consensus 229 kKL~dv~Fs~l~~ 241 (421)
T KOG2779|consen 229 KKLIDVGFSHLSR 241 (421)
T ss_pred hHeeEeccccccc
Confidence 7776665
No 165
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=42.87 E-value=64 Score=34.16 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=47.7
Q ss_pred CeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhhhHHHHHhccCcEE
Q 002195 844 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 903 (954)
Q Consensus 844 ~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~eA~~~w~~kfGF~~ 903 (954)
..++||.=+|.. +.|.++.|+..+-..|...|.+-++.-|......+..+ +|+..
T Consensus 85 ~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~ 139 (179)
T PF12261_consen 85 SQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPP 139 (179)
T ss_pred hheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCc
Confidence 457888877765 58999999999999999999999999999999999887 77654
No 166
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=41.69 E-value=1e+02 Score=30.95 Aligned_cols=57 Identities=4% Similarity=-0.003 Sum_probs=47.7
Q ss_pred EeeCCeEEEEEEEEEeCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002195 827 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 884 (954)
Q Consensus 827 L~~~~~vVsaA~lri~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 884 (954)
...+|++|++|.+.+..+.+.-|-.+= +|++....+|...+-.-.+.++.+|.+.+-
T Consensus 44 ~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 44 YRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 358999999999998877765554443 789999999998888888899999999998
No 167
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=40.89 E-value=8.2 Score=36.75 Aligned_cols=42 Identities=14% Similarity=-0.087 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeec
Q 002195 489 ENASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYA 532 (954)
Q Consensus 489 ~~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~ 532 (954)
-.+.||+|.|||...-.. .....+. +.+...|+.|+||+..|
T Consensus 119 ~d~~NHsc~pn~~~~~~~~~~~~~~~--~~a~r~I~~GeEi~isY 161 (162)
T PF00856_consen 119 ADMLNHSCDPNCEVSFDFDGDGGCLV--VRATRDIKKGEEIFISY 161 (162)
T ss_dssp GGGSEEESSTSEEEEEEEETTTTEEE--EEESS-B-TTSBEEEES
T ss_pred hHheccccccccceeeEeecccceEE--EEECCccCCCCEEEEEE
Confidence 368999999999844432 4677777 88999999999997765
No 168
>PTZ00064 histone acetyltransferase; Provisional
Probab=40.88 E-value=31 Score=41.58 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=23.0
Q ss_pred EeeeeEeecCcccCChhHHHHHHHHHHh
Q 002195 848 ELPLVATSKINHGKGYFQLLFACIEKLL 875 (954)
Q Consensus 848 EiplVAT~~~yRgqG~gr~L~~~IE~~l 875 (954)
-|--|-|.|.|||+|||+.||+.==.+.
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeLS 413 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKLS 413 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhhh
Confidence 5777889999999999999998654443
No 169
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=40.08 E-value=41 Score=38.98 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=35.8
Q ss_pred EEEEEEee--CCeEEEEEEEEEeC------------------------------------CeeEEeeeeEeecCcccCCh
Q 002195 822 MYCAILTV--NSSVVSAGILRVFG------------------------------------QEVAELPLVATSKINHGKGY 863 (954)
Q Consensus 822 fY~~VL~~--~~~vVsaA~lri~g------------------------------------~~vAEiplVAT~~~yRgqG~ 863 (954)
.|.+|||+ .|+|||++.|..-- ++-.||.-+=.+++||+-|.
T Consensus 59 ~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~ 138 (342)
T PF04958_consen 59 GYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGN 138 (342)
T ss_dssp EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHH
T ss_pred ceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCch
Confidence 69999995 59999999654211 56788999999999999999
Q ss_pred hHHHHH
Q 002195 864 FQLLFA 869 (954)
Q Consensus 864 gr~L~~ 869 (954)
|+.|-.
T Consensus 139 G~lLSr 144 (342)
T PF04958_consen 139 GRLLSR 144 (342)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 170
>PLN03239 histone acetyltransferase; Provisional
Probab=39.69 E-value=38 Score=39.21 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=23.8
Q ss_pred EeeeeEeecCcccCChhHHHHHHHHHHhhh
Q 002195 848 ELPLVATSKINHGKGYFQLLFACIEKLLSF 877 (954)
Q Consensus 848 EiplVAT~~~yRgqG~gr~L~~~IE~~l~~ 877 (954)
.|--|-|.|.||++|||+.||+.==++.+.
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~ 244 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKK 244 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhh
Confidence 477788999999999999999865444433
No 171
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=38.30 E-value=16 Score=32.56 Aligned_cols=34 Identities=26% Similarity=0.710 Sum_probs=13.1
Q ss_pred cceecccCCCCCCCCCCCceeeCC--CcCcccCccccCc
Q 002195 665 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKK 701 (954)
Q Consensus 665 ~C~IC~~~dfs~sgf~~~~LL~CD--qCerayHv~CL~~ 701 (954)
.|.||...-. ..+....+.|+ .|.+.||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 3889986421 11234568898 9999999999965
No 172
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=37.71 E-value=34 Score=40.20 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEeeCCeEEEEEEEEEeC---CeeEEeeeeEee
Q 002195 779 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFG---QEVAELPLVATS 855 (954)
Q Consensus 779 skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~~~~vVsaA~lri~g---~~vAEiplVAT~ 855 (954)
....+-|=.|-..| +|++| +| +|...|.=+||...|..= ++-++--. .+--.|--|=|.
T Consensus 208 k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G-~VGYFSKEK~s~~~yNlaCILtL 269 (396)
T KOG2747|consen 208 KLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYG-CVGYFSKEKESSENYNLACILTL 269 (396)
T ss_pred hHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcc-eeeeeccccccccccceeeeeec
Confidence 44467777777777 33322 22 244445555555543321 12211111 122337778899
Q ss_pred cCcccCChhHHHHHH
Q 002195 856 KINHGKGYFQLLFAC 870 (954)
Q Consensus 856 ~~yRgqG~gr~L~~~ 870 (954)
|.||++|||+.|++.
T Consensus 270 PpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 270 PPYQRKGYGKLLIDF 284 (396)
T ss_pred Chhhhcccchhhhhh
Confidence 999999999999874
No 173
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=37.10 E-value=22 Score=41.90 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=92.4
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCccccchhhhhhhhhcccccchHHHHHHHhhhccc
Q 002195 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (954)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (954)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-+-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 888643 3456899999964333332222222345543 44689999999887732
Q ss_pred chhhhHHhhh-hhhcchHHHHHHHHhhCCCCCCccCCCCCccceeecCCCCcccc--cCCcc-----cccccccccCCCC
Q 002195 101 ILESVVEEEN-QLVQMTVENVIEETVKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNK-----KCLKRPSAMKPKV 172 (954)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~trs~lk~k~ 172 (954)
..++| ++.|=||..++| ||+.-+- |-..|.+|-+.. +++.- --+|+||+-++||
T Consensus 158 -----~slpNV~~eeGtV~sLle------------e~gvvkG-V~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v 219 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLE------------EEGVVKG-VTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKV 219 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHh------------ccCeEEe-EEEecCCCceEEEecceEEEecchhHHHHHHhcCCcc
Confidence 12222 222335544443 3332111 223333333333 34432 1578899999999
Q ss_pred Ccccceeccc--cCCCCC-----cc---------------chhhHhhhhcCCCCCCCCcccccccc-cccccCCCCchhh
Q 002195 173 EPVEVLVTQS--EGFGNE-----SM---------------SLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMTVT 229 (954)
Q Consensus 173 e~~~~~~~~~--e~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~~k~~-kk~~~~~~p~~vk 229 (954)
+++.+.-.+. ++-+.. -+ ++++-.. +-++..-|+-.+.|||.. |+...-.+|..+|
T Consensus 220 ~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~-~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR 298 (509)
T KOG1298|consen 220 EEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLV-DVPGQKLPSIANGEMATYMKESVAPQIPEKLR 298 (509)
T ss_pred cccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEE-ecCcccCCcccchhHHHHHHHhhCcCCCHHHH
Confidence 9765533222 111000 00 0000000 012333455567676543 4444556899999
Q ss_pred hhhhcCCCCCc
Q 002195 230 ELFETGLLDGV 240 (954)
Q Consensus 230 ~Ll~tGlleg~ 240 (954)
+-+-.++=+|.
T Consensus 299 ~~F~~av~~g~ 309 (509)
T KOG1298|consen 299 ESFLEAVDEGN 309 (509)
T ss_pred HHHHHHhhccc
Confidence 98877666665
No 174
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=9.6 Score=42.31 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=38.7
Q ss_pred ccccccccccccCCeeccCCCCCccCcccCcCCCCCC-CCcccccccccccc
Q 002195 573 DNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQ-GDWYCKYCQNMFER 623 (954)
Q Consensus 573 ~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~l~~vP~-g~W~C~~C~~~~~~ 623 (954)
..|..|.+|.+.-+-..|-.|++.|...|+-.. |.. ..-+||.|+...++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~-~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLIS-WTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHH-HHhhccccCchhhhhccc
Confidence 567889999999988899999999999998532 222 23469999976543
No 175
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=13 Score=41.82 Aligned_cols=51 Identities=16% Similarity=0.415 Sum_probs=38.1
Q ss_pred cccccccccccccCCeeccCCCCCccCcccCcCCCCCCCCccccccccccccc
Q 002195 572 KDNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 624 (954)
Q Consensus 572 ~~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~~~~e 624 (954)
++++..|.+|.+.-+-.-|.-|++-|.-.|+. +|-...--||.|+..+++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~--~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCIL--EWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHH--HHHccccCCCcccccCCCc
Confidence 45678899999998878889999999999984 1212222399999876654
No 176
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=35.49 E-value=60 Score=37.57 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=38.5
Q ss_pred cEEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEeeeeEeecCcccCC
Q 002195 821 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 862 (954)
Q Consensus 821 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 862 (954)
..|.+||+. .|+|||++.|..- | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 468999996 5899999866432 1 4678888899999999999
Q ss_pred hhHHHHH
Q 002195 863 YFQLLFA 869 (954)
Q Consensus 863 ~gr~L~~ 869 (954)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (336)
T TIGR03244 134 NGRLLSK 140 (336)
T ss_pred chhhHHH
Confidence 9977643
No 177
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=35.00 E-value=20 Score=44.41 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCCCccc-cCccccchhhcccCCCCCCCeeeeecC
Q 002195 490 NASPPLSFPNKSRWNIT-PKDQRLHKLVFDESGLPDGTEVGYYAC 533 (954)
Q Consensus 490 ~~~~~~~~pn~~~~k~t-~~D~rlhklLF~~~~LpdGtel~Y~~~ 533 (954)
.+-||+-.|||-..=.. +||.|++ +|+...|..|+||+|.|+
T Consensus 667 rFANHS~nPNCYAkvm~V~GdhRIG--ifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 667 RFANHSFNPNCYAKVMMVAGDHRIG--IFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhccCCCCCCcEEEEEEecCCccee--eeehhhcccCceeeeeec
Confidence 46799999999865554 9999999 999999999999999875
No 178
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=34.84 E-value=39 Score=40.38 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.7
Q ss_pred EeeeeEeecCcccCChhHHHHHHHHH
Q 002195 848 ELPLVATSKINHGKGYFQLLFACIEK 873 (954)
Q Consensus 848 EiplVAT~~~yRgqG~gr~L~~~IE~ 873 (954)
.|--|-|.|.||++|||+.||+.-=+
T Consensus 308 NLaCIltlP~yQrkGyG~~LI~~SYe 333 (450)
T PLN00104 308 NLACILTLPPYQRKGYGKFLIAFSYE 333 (450)
T ss_pred ceEEEEecchhhhcchhheehhheeh
Confidence 47778899999999999999875433
No 179
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=34.37 E-value=61 Score=37.51 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=38.5
Q ss_pred cEEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEeeeeEeecCcccCC
Q 002195 821 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 862 (954)
Q Consensus 821 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 862 (954)
..|.+||++ .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 378999995 6899999866432 1 4678888999999999999
Q ss_pred hhHHHHH
Q 002195 863 YFQLLFA 869 (954)
Q Consensus 863 ~gr~L~~ 869 (954)
.|+.|-.
T Consensus 135 ~G~lLSr 141 (336)
T TIGR03245 135 AAELLSR 141 (336)
T ss_pred chhHHHH
Confidence 9977643
No 180
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=33.77 E-value=18 Score=34.26 Aligned_cols=29 Identities=41% Similarity=0.980 Sum_probs=24.7
Q ss_pred cccccccccc-cCCeeccCC--CCCccCcccC
Q 002195 574 NDDLCTICAD-GGNLLPCDG--CPRAFHKECA 602 (954)
Q Consensus 574 ndd~C~vC~d-gG~Ll~CD~--CprafH~~CL 602 (954)
....|.+|+. +|-.+-|.. |..+||..|.
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA 85 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCA 85 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHH
Confidence 3567999997 577888987 9999999998
No 181
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=33.76 E-value=64 Score=37.32 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=38.6
Q ss_pred cEEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEeeeeEeecCcccCC
Q 002195 821 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 862 (954)
Q Consensus 821 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 862 (954)
..|.+|||+ .|+|||++.|..- | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 479999995 5899999866432 1 4678888999999999999
Q ss_pred hhHHHHH
Q 002195 863 YFQLLFA 869 (954)
Q Consensus 863 ~gr~L~~ 869 (954)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (335)
T TIGR03243 134 NGRLLSR 140 (335)
T ss_pred chhhHHH
Confidence 9977643
No 182
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.65 E-value=12 Score=41.72 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=31.4
Q ss_pred cccccccccccccCC-------e---eccCCCCCccCcccCc-CCCCCCCCcccccccccc
Q 002195 572 KDNDDLCTICADGGN-------L---LPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 572 ~~ndd~C~vC~dgG~-------L---l~CD~CprafH~~CL~-l~~vP~g~W~C~~C~~~~ 621 (954)
..+|..|++|+..-+ + ..=-.|.+.||.+|+. +--+ -..-.||.|+.++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHHh
Confidence 456789999994311 1 1112499999999994 3222 2246799998754
No 183
>PRK10456 arginine succinyltransferase; Provisional
Probab=33.17 E-value=62 Score=37.53 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=38.3
Q ss_pred cEEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEeeeeEeecCcccCC
Q 002195 821 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 862 (954)
Q Consensus 821 GfY~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAEiplVAT~~~yRgqG 862 (954)
..|.+||+. .|+|||++.|..- | ++..||--+-.+++||+-|
T Consensus 56 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~ 135 (344)
T PRK10456 56 QGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEG 135 (344)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCC
Confidence 478999995 5899999866432 1 4678888889999999999
Q ss_pred hhHHHHH
Q 002195 863 YFQLLFA 869 (954)
Q Consensus 863 ~gr~L~~ 869 (954)
.|+.|-.
T Consensus 136 ~G~LLSr 142 (344)
T PRK10456 136 NGYLLSK 142 (344)
T ss_pred chhHHHH
Confidence 9977643
No 184
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.21 E-value=1.9e+02 Score=31.45 Aligned_cols=81 Identities=22% Similarity=0.151 Sum_probs=60.1
Q ss_pred ecEEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEeeeeEeec--CcccCCh----hHHHHHHHH
Q 002195 820 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKGY----FQLLFACIE 872 (954)
Q Consensus 820 ~GfY~~VL~~~~~vVsaA~lri~g---------------------~~vAEiplVAT~~--~yRgqG~----gr~L~~~IE 872 (954)
.-.|.+.+..+|+|+|+++|=... .+++|.-++|++. .-+.+|= ...||..+-
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 347888778899999999874322 4899999999987 5555543 567999999
Q ss_pred HHhhhcCccEEEecchhhhHHHHHhccCc
Q 002195 873 KLLSFLRVKSIVLPAAEEAESIWTDKFGF 901 (954)
Q Consensus 873 ~~l~~lgV~~LvLpA~~eA~~~w~~kfGF 901 (954)
+.+...|+.+|+.=...-.+.+... .||
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 9999999999986555444444444 444
No 185
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=30.88 E-value=32 Score=44.45 Aligned_cols=46 Identities=37% Similarity=0.983 Sum_probs=37.4
Q ss_pred ccccccccccCC--eeccCCCCCccCcccCc--CCCCCCCCccccccccc
Q 002195 575 DDLCTICADGGN--LLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 575 dd~C~vC~dgG~--Ll~CD~CprafH~~CL~--l~~vP~g~W~C~~C~~~ 620 (954)
...|..|..+.. ++.|++|...||..|.. ++.+++++|.|+.|...
T Consensus 155 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 155 YPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred chhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 366788886552 33999999999999996 77889999999999754
No 186
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=30.85 E-value=9.1 Score=27.98 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=23.4
Q ss_pred cccccccCCeeccCCCCCccCcccCc-CCCCCCCCcccccc
Q 002195 578 CTICADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYC 617 (954)
Q Consensus 578 C~vC~dgG~Ll~CD~CprafH~~CL~-l~~vP~g~W~C~~C 617 (954)
|.+|.+......-..|.+.||..|+. +.. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 56777665544445689999999985 211 233456655
No 187
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=30.20 E-value=28 Score=39.69 Aligned_cols=23 Identities=35% Similarity=0.774 Sum_probs=20.0
Q ss_pred CCCceeeCCCcCcccC-ccccCcc
Q 002195 680 GPRTILLCDQCEREFH-VGCLKKH 702 (954)
Q Consensus 680 ~~~~LL~CDqCerayH-v~CL~~~ 702 (954)
.++.|++|-.|+-||| -+|++..
T Consensus 144 ~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 144 EEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ccceeeeEEeccchhcccccCccc
Confidence 4578999999999999 8998764
No 188
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=29.10 E-value=42 Score=41.95 Aligned_cols=38 Identities=24% Similarity=0.658 Sum_probs=24.9
Q ss_pred ccccccccccccCCeeccCCCCCccCcccCcCCCCCCCCccccccccc
Q 002195 573 DNDDLCTICADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 573 ~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~~ 620 (954)
.+..+|..|+..-....|-.|+. .+|.+.-||+.|...
T Consensus 13 ~~akFC~~CG~~l~~~~Cp~CG~----------~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 13 NNNRFCQKCGTSLTHKPCPQCGT----------EVPVDEAHCPNCGAE 50 (645)
T ss_pred CCCccccccCCCCCCCcCCCCCC----------CCCcccccccccCCc
Confidence 34567888876543334555543 467788899999765
No 189
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=28.85 E-value=38 Score=30.32 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 002195 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (954)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (954)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999998876654
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.82 E-value=19 Score=42.68 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=28.7
Q ss_pred ccccccccccC----CeeccCCCCCccCcccCcCCCCCCCCcccccccc
Q 002195 575 DDLCTICADGG----NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 619 (954)
Q Consensus 575 dd~C~vC~dgG----~Ll~CD~CprafH~~CL~l~~vP~g~W~C~~C~~ 619 (954)
-..|.||...- ..+.---|.++||-.|+. .| ++-.||.|+.
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~--~w--~~~scpvcR~ 219 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLM--KW--WDSSCPVCRY 219 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHh--hc--ccCcChhhhh
Confidence 36799998432 244555699999999994 22 2456888885
No 191
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.61 E-value=11 Score=43.86 Aligned_cols=42 Identities=36% Similarity=0.715 Sum_probs=29.4
Q ss_pred cccccccccC----CeeccCCCCCccCcccCcCCCCCCC-Cc--ccccccc
Q 002195 576 DLCTICADGG----NLLPCDGCPRAFHKECASLSSIPQG-DW--YCKYCQN 619 (954)
Q Consensus 576 d~C~vC~dgG----~Ll~CD~CprafH~~CL~l~~vP~g-~W--~C~~C~~ 619 (954)
-.|.||.|+- +|.--..|++.||..|+. .|-++ .| -||.|+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~--qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLT--QWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHH--HHHccCCccCCCCceee
Confidence 3699998763 355556699999999994 23232 24 6999984
No 192
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=28.13 E-value=11 Score=34.89 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=19.6
Q ss_pred CCCCccCcccCcCCCCCCCCcccccccccc
Q 002195 592 GCPRAFHKECASLSSIPQGDWYCKYCQNMF 621 (954)
Q Consensus 592 ~CprafH~~CL~l~~vP~g~W~C~~C~~~~ 621 (954)
.|.++||.-|+. .+-+..-.||.++..+
T Consensus 53 ~CnHaFH~HCI~--rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIY--RWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHH--HHHhhCCCCCCCCcee
Confidence 488999999995 1112256799888754
No 193
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=26.78 E-value=35 Score=39.49 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=33.8
Q ss_pred ceeeCCCcCcccCccc--cCcccCCcccCCCCCcceecCCchhhHHHHHH
Q 002195 683 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 730 (954)
Q Consensus 683 ~LL~CDqCerayHv~C--L~~~~~~~LkelP~g~WfC~~~C~~i~~~Lqk 730 (954)
.++.|+.|..|||..| ++. +.....+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 6789999999999999 654 3444556688999 899877655543
No 194
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=26.75 E-value=27 Score=31.80 Aligned_cols=31 Identities=35% Similarity=0.867 Sum_probs=25.6
Q ss_pred cccccccccccc-CCeeccCC--CCCccCcccCc
Q 002195 573 DNDDLCTICADG-GNLLPCDG--CPRAFHKECAS 603 (954)
Q Consensus 573 ~ndd~C~vC~dg-G~Ll~CD~--CprafH~~CL~ 603 (954)
.....|.+|... |-.+-|.. |...||..|.-
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 344689999988 88888874 99999999983
No 195
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=26.31 E-value=3e+02 Score=30.54 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=67.7
Q ss_pred cceeeEcCCCCCChhhHHHHHHHHHHhhhcCCCcccCCCCCCccccccccccCCCceEecEEEEEEeeCCeEEEEEEEEE
Q 002195 762 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRV 841 (954)
Q Consensus 762 ~ikW~lLsgk~~s~e~~skLa~AL~If~EcFdPIvD~~SGrDLIp~MVy~r~~~r~df~GfY~~VL~~~~~vVsaA~lri 841 (954)
++.+.+.. ...+.|...+...=+...|.--+ .++.+ .+--..+|.+.... ++ .+-...+|++||+|.+-+
T Consensus 94 dl~v~~~~-~~~~~E~~~Ly~rY~~~rH~dg~--m~~~~-~~~y~~Fl~~~~~~-----t~-~~ey~~~g~LiaVav~D~ 163 (240)
T PRK01305 94 DLVVRVLP-PEFTEEHYALYRRYLRARHADGG--MDPPS-RDQYAQFLEDSWVN-----TR-FIEFRGDGKLVAVAVTDV 163 (240)
T ss_pred CeEEEEcC-CCCCHHHHHHHHHHHHHhcCCCC--CCCCC-HHHHHHHHhcCCCC-----cE-EEEEEeCCeEEEEEEEec
Confidence 44555433 22345666666666666663221 01111 11122344443321 11 122236899999999999
Q ss_pred eCCeeEEeeeeEeecCcccCChhHHHHHHHHHHhhhcCccEEE
Q 002195 842 FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 884 (954)
Q Consensus 842 ~g~~vAEiplVAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~Lv 884 (954)
..+.+.-|-.+ =+++|-..++|...+-.-.+.++.+|.+.+-
T Consensus 164 l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 164 LDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred cCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 88877666433 4788878888888777778888999999888
No 196
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.19 E-value=30 Score=33.48 Aligned_cols=31 Identities=26% Similarity=0.864 Sum_probs=20.5
Q ss_pred ccCCCCCccCcccCc------C-CCCCCCCcccccccc
Q 002195 589 PCDGCPRAFHKECAS------L-SSIPQGDWYCKYCQN 619 (954)
Q Consensus 589 ~CD~CprafH~~CL~------l-~~vP~g~W~C~~C~~ 619 (954)
-|..|...|-..||- + +-+.+++|.||.|+.
T Consensus 32 ~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 32 SCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 344457777777772 1 223467899999985
No 197
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.50 E-value=26 Score=38.30 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=36.1
Q ss_pred cccccccccccccCCeeccCCCCCccCcccC-cCCCCCCCCcccccccccccccc
Q 002195 572 KDNDDLCTICADGGNLLPCDGCPRAFHKECA-SLSSIPQGDWYCKYCQNMFERKR 625 (954)
Q Consensus 572 ~~ndd~C~vC~dgG~Ll~CD~CprafH~~CL-~l~~vP~g~W~C~~C~~~~~~e~ 625 (954)
+.+...|.||.|.-+--.-.-|++-|.-.|| .|..+....-.||-|+..+..++
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 4566789999986542112236666777777 46666667788999998765443
No 198
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=25.00 E-value=30 Score=33.18 Aligned_cols=57 Identities=21% Similarity=0.580 Sum_probs=31.1
Q ss_pred CccccCCCCccCC----cccccccCCCCCcccccc---cccccccc------CCeeccCCCCCccCcccC
Q 002195 546 GIICHCCNSEVSP----SQFEAHAGRQYPGKDNDD---LCTICADG------GNLLPCDGCPRAFHKECA 602 (954)
Q Consensus 546 GI~C~cC~~~vsP----s~FE~hag~k~~~~~ndd---~C~vC~dg------G~Ll~CD~CprafH~~CL 602 (954)
+|.|.||++-+-. .+++.|+=.+++.+.-.+ .|.+|... +....|..|.+.|...|-
T Consensus 26 alkc~~C~kyYaCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~Ck 95 (105)
T COG4357 26 ALKCKCCQKYYACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPGCK 95 (105)
T ss_pred eeeechhhhhhhHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcccc
Confidence 4778899876543 346666654444433333 45555532 334455556565555554
No 199
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=24.96 E-value=50 Score=42.81 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=37.6
Q ss_pred cceecccCCCCCCCCCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchhh
Q 002195 665 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 724 (954)
Q Consensus 665 ~C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~i 724 (954)
.|..|.+.. .+..+ .|+.|.+.||..|+.+ +++.++.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 377787653 23345 9999999999999987 678899999997 677554
No 200
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=24.70 E-value=58 Score=38.00 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCccccCccccchhhcccCCCCCCCeeeeecCCeeeccCcccCCCccccCCC
Q 002195 490 NASPPLSFPNKSRWNITPKDQRLHKLVFDESGLPDGTEVGYYACGQKLLEGYKNGLGIICHCCN 553 (954)
Q Consensus 490 ~~~~~~~~pn~~~~k~t~~D~rlhklLF~~~~LpdGtel~Y~~~gq~ll~G~~~~~GI~C~cC~ 553 (954)
.+.||-|-|||+... +.||+---|.| .+|..|.|+|.+|.. |+--.+.+.|.||.
T Consensus 198 afINHDCrpnCkFvs-~g~~tacvkvl---RDIePGeEITcFYgs-----~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 198 AFINHDCRPNCKFVS-TGRDTACVKVL---RDIEPGEEITCFYGS-----GFFGENNEECECVT 252 (453)
T ss_pred HhhcCCCCCCceeec-CCCceeeeehh---hcCCCCceeEEeecc-----cccCCCCceeEEee
Confidence 568999999999544 23344333333 499999999877643 23333445566543
No 201
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.56 E-value=21 Score=32.00 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=21.0
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 002195 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (954)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (954)
=-+|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999998887655
No 202
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=23.23 E-value=25 Score=37.65 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=33.1
Q ss_pred cccccccccccCCeeccCCCCCccCcccCc-CCC-------------CCCCCccccccccccc
Q 002195 574 NDDLCTICADGGNLLPCDGCPRAFHKECAS-LSS-------------IPQGDWYCKYCQNMFE 622 (954)
Q Consensus 574 ndd~C~vC~dgG~Ll~CD~CprafH~~CL~-l~~-------------vP~g~W~C~~C~~~~~ 622 (954)
.+..|.||.+.-+-.....|.+.|+..|+. +.. ...+...||.|+..+.
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 457799999865433335699999999984 211 0224578999997653
No 203
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.22 E-value=28 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=12.1
Q ss_pred ceecccCCCCCCCCCCCceeeCCCcCcccCcccc
Q 002195 666 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCL 699 (954)
Q Consensus 666 C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL 699 (954)
|.+|+... +......|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 77788653 22478999999999999883
No 204
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=22.65 E-value=45 Score=38.62 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.9
Q ss_pred EEeeeeEeecCcccCChhHHHHH
Q 002195 847 AELPLVATSKINHGKGYFQLLFA 869 (954)
Q Consensus 847 AEiplVAT~~~yRgqG~gr~L~~ 869 (954)
-.+--|-|.|.|||.|||..||+
T Consensus 263 yNLaCILtLP~yQRrGYG~lLId 285 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLID 285 (395)
T ss_pred CceEEEEecChhHhcccceEeee
Confidence 45677889999999999999876
No 205
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.44 E-value=55 Score=39.83 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=36.9
Q ss_pred ccccccccccccCCeeccCCCCCccCcccCcC-CCCC--CCCcccccccc
Q 002195 573 DNDDLCTICADGGNLLPCDGCPRAFHKECASL-SSIP--QGDWYCKYCQN 619 (954)
Q Consensus 573 ~ndd~C~vC~dgG~Ll~CD~CprafH~~CL~l-~~vP--~g~W~C~~C~~ 619 (954)
..+.+|+-|.-.|..+.|+.|-+.||..|+.. .+.+ +..|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 45678999999999999999999999999952 2233 24588988864
No 206
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=22.08 E-value=18 Score=41.95 Aligned_cols=46 Identities=26% Similarity=0.611 Sum_probs=30.5
Q ss_pred cccccccccccc----CC------e-eccC--CCCCccCcccCcCCCCCCCCccccccccc
Q 002195 573 DNDDLCTICADG----GN------L-LPCD--GCPRAFHKECASLSSIPQGDWYCKYCQNM 620 (954)
Q Consensus 573 ~ndd~C~vC~dg----G~------L-l~CD--~CprafH~~CL~l~~vP~g~W~C~~C~~~ 620 (954)
..|..|.+|.|+ ++ + .-=. -|++.+|..||. .|-+..--||.|+..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLk--nW~ERqQTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLK--NWLERQQTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHH--HHHHhccCCCcccCc
Confidence 456789999986 21 0 0001 388999999994 333445679999976
No 207
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=21.23 E-value=92 Score=38.32 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=30.0
Q ss_pred eEeecCcccCChhHHHHHHHHHHhhhcCccEEEecchhh----hHHHHHhccCcEEcChhH
Q 002195 852 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE----AESIWTDKFGFKKIDPEL 908 (954)
Q Consensus 852 VAT~~~yRgqG~gr~L~~~IE~~l~~lgV~~LvLpA~~e----A~~~w~~kfGF~~i~~~e 908 (954)
+-+-+-|..-++-+.-...+|+.-+.-...-.+-|--.+ -...|.-++-|.+...++
T Consensus 429 yrKPPiYkq~~~~~~~~~s~eDi~k~sk~p~~~~pdpas~~~~e~~~w~~~ps~~V~~~~~ 489 (670)
T KOG1044|consen 429 YRKPPIYKQHAILRADSKSSEDIIKFSKFPAAQAPDPASTPEIETDHWPGKPSFAVPGPEM 489 (670)
T ss_pred ccCCCcccchhhhhcccccccchhhhhcCCcccCCCCCCCCcccccCCCCCCcccccCchh
Confidence 334455666666666666666555444444433332211 344677777777774433
No 208
>PHA02926 zinc finger-like protein; Provisional
Probab=21.18 E-value=39 Score=37.04 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=31.5
Q ss_pred ccccccccccccC-------C--eeccCCCCCccCcccCc-CCCC---CCCCcccccccccc
Q 002195 573 DNDDLCTICADGG-------N--LLPCDGCPRAFHKECAS-LSSI---PQGDWYCKYCQNMF 621 (954)
Q Consensus 573 ~ndd~C~vC~dgG-------~--Ll~CD~CprafH~~CL~-l~~v---P~g~W~C~~C~~~~ 621 (954)
..+..|.+|.+.- + ...=+.|.+.|+..|+. |... ......||.|+..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 3467899998531 1 12335788999999984 3321 12357899999754
No 209
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=21.14 E-value=56 Score=41.54 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCCCccc--cCccccchh-hcccCCCCCCCeeeeecC
Q 002195 489 ENASPPLSFPNKSRWNIT--PKDQRLHKL-VFDESGLPDGTEVGYYAC 533 (954)
Q Consensus 489 ~~~~~~~~~pn~~~~k~t--~~D~rlhkl-LF~~~~LpdGtel~Y~~~ 533 (954)
-.+.||||+||=--|..- .-|.|+-.. .|+..-+.+|||||+.|+
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~ 1237 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQ 1237 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecc
Confidence 456899999997766554 566666543 568889999999998875
No 210
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.74 E-value=38 Score=41.75 Aligned_cols=37 Identities=32% Similarity=0.765 Sum_probs=26.8
Q ss_pred CCCCceeeCCCcCcccCccccCcccCCcccCCCCCcceecCCchhhHHH
Q 002195 679 FGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSV 727 (954)
Q Consensus 679 f~~~~LL~CDqCerayHv~CL~~~~~~~LkelP~g~WfC~~~C~~i~~~ 727 (954)
|..++...|+.|...||..|++... + -| +.|.++..+
T Consensus 526 F~~~~~~rC~~C~avfH~~C~~r~s-------~----~C-PrC~R~q~r 562 (580)
T KOG1829|consen 526 FETRNTRRCSTCLAVFHKKCLRRKS-------P----CC-PRCERRQKR 562 (580)
T ss_pred cccccceeHHHHHHHHHHHHHhccC-------C----CC-CchHHHHHH
Confidence 3456788999999999999997632 1 15 788766543
No 211
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=20.66 E-value=76 Score=33.91 Aligned_cols=35 Identities=31% Similarity=0.719 Sum_probs=26.4
Q ss_pred ceecccCCCCCCCCCCCceeeCCCcCcccCccccCc
Q 002195 666 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 701 (954)
Q Consensus 666 C~IC~~~dfs~sgf~~~~LL~CDqCerayHv~CL~~ 701 (954)
|.+|+..+ -.=.|...+...|..|..-||..|...
T Consensus 155 Ce~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 155 CEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCC
Confidence 88887653 122355568899999999999999963
Done!