BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002196
(954 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 133/567 (23%), Positives = 232/567 (40%), Gaps = 79/567 (13%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+++SV V +SPDG A V L+ +G +L L H SV +AFS P+
Sbjct: 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDG 110
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
Q ++ + +D+ +K+W+ G GH S V+ + + Q I S + D +K W
Sbjct: 111 Q-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW 166
Query: 537 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
N ++ GHSS++ +A+S DG + S +K + WN G + +T
Sbjct: 167 ---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
G SV V F +A D+ +K W+ N LL ++ G + + F +G
Sbjct: 219 GH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVNGVAFRPDG 274
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAAIVKAPAIGTFGSANA 710
+A +++D +K L N +G +LL+T+ + VA I A T N
Sbjct: 275 QTIASASDDKTVK-LWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332
Query: 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQCRSLR 769
N G L T ++++ G++ F+ IA + +K+ ++W R+ +
Sbjct: 333 N-GQHLQTLTGHSSSVWGVA-----FSPDGQTIASASDDKTVKLWN----------RNGQ 376
Query: 770 LPDNLT--AMRVSRLIYTNSGLAILALASNAVHKLWKWPRN------------------- 808
L LT + V + ++ G I + + + KLW RN
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAF 434
Query: 809 --ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK- 865
+ + A+ ++ +LW +L T T +V A S + + SAS K
Sbjct: 435 SPDDQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 866 ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925
+ L+N D IA +D +++++N R ++ L G
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 547
Query: 926 HQKRITGLAFSNTLNVLVSSGADSQVR 952
H + G+AFS + S+ +D V+
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVK 574
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 133/567 (23%), Positives = 231/567 (40%), Gaps = 79/567 (13%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+++SV V +SPDG A V L+ +G +L L H SV +AFS P+
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTL--TGHSSSVWGVAFS-PDG 69
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
Q ++ + +D+ +K+W+ G GH S V + + Q I S + D +K W
Sbjct: 70 Q-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLW 125
Query: 537 LYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
N ++ GHSS++ +A+S DG + S +K + WN G + +T
Sbjct: 126 ---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 177
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
G SV V F +A D+ +K W+ N LL ++ G + + F+ +G
Sbjct: 178 GH-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--TGHSSSVRGVAFSPDG 233
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAAIVKAPAIGTFGSANA 710
+A +++D +K L N +G +LL+T+ + + VA I A T N
Sbjct: 234 QTIASASDDKTVK-LWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQCRSLR 769
N G L T ++++ G++ F+ IA + +K+ ++W R+ +
Sbjct: 292 N-GQLLQTLTGHSSSVWGVA-----FSPDGQTIASASDDKTVKLWN----------RNGQ 335
Query: 770 LPDNLTAMRVS--RLIYTNSGLAILALASNAVHKLWKWPRN------------------- 808
LT S + ++ G I + + + KLW RN
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAF 393
Query: 809 --ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK- 865
+ + A+ ++ +LW +L T T +V A S +D + SAS K
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQLLQTL----TGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 866 ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925
+ L+N D IA +D +++++N R ++ L G
Sbjct: 450 VKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 506
Query: 926 HQKRITGLAFSNTLNVLVSSGADSQVR 952
H + G+AFS + S+ D V+
Sbjct: 507 HSSSVRGVAFSPDGQTIASASDDKTVK 533
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 100
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 101 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 157 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 210
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 39/228 (17%)
Query: 325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFH--PVQQI-------LLVVG 375
+ + PQS S S D+ + + + G +K++ H PV + L+V
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 376 TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435
+ G +W+ S G C +L D V+ V +SP+G
Sbjct: 190 SYDGLCRIWDTAS--------------GQC----LKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKV 491
A + + L+ Y G L+ + G N+ + N ++ +V+ ED ++ +
Sbjct: 232 ATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
W+ T +GH V S H ENI + D IK W D
Sbjct: 286 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946
I G ED+ + I+N++ E+ KL+GH + A T N++ S+
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 102
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 103 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 159 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 212
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 213 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 272
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 39/228 (17%)
Query: 325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFH--PVQQI-------LLVVG 375
+ + PQS S S D+ + + + G +K++ H PV + L+V
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 376 TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435
+ G +W+ S G C +L D V+ V +SP+G
Sbjct: 192 SYDGLCRIWDTAS--------------GQC----LKTLIDDDNPPVSFVKFSPNGKYILA 233
Query: 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKV 491
A + + L+ Y G L+ + G N+ + N ++ +V+ ED ++ +
Sbjct: 234 ATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
W+ T +GH V S H ENI + D IK W D
Sbjct: 288 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946
I G ED+ + I+N++ E+ KL+GH + A T N++ S+
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 85 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 39/228 (17%)
Query: 325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFH--PVQQI-------LLVVG 375
+ + PQS S S D+ + + + G +K++ H PV + L+V
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 376 TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435
+ G +W+ S G C +L D V+ V +SP+G
Sbjct: 174 SYDGLCRIWDTAS--------------GQC----LKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKV 491
A + + L+ Y G L+ + G N+ + N ++ +V+ ED ++ +
Sbjct: 216 ATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
W+ T +GH V S H ENI + D IK W D
Sbjct: 270 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 49/317 (15%)
Query: 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAA 695
G +A ++F+ G LA S+ D IKI DG + +T+ S VA S
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 85
Query: 696 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS-R 752
+V A T + + G L + G SN NF I + ++S R
Sbjct: 86 LVSASDDKTLKIWDVSSGKCL-------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 753 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812
IW + + +C LP + + VS + + G I++ + + + ++W
Sbjct: 139 IWDV----KTGKCLK-TLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIW--------- 182
Query: 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLF 869
SG + I D NP V S N Y+++A+ K+ +
Sbjct: 183 -------------DTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 870 NXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 929
+ I G ED+ + I+N++ E+ KL+GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 930 ITGLAFSNTLNVLVSSG 946
+ A T N++ S+
Sbjct: 288 VISTACHPTENIIASAA 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 77
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 78 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 134 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 187
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
V V+F LAA + +K WD
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 238
Query: 472 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 239 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 298
Query: 528 ATDGKIKAWLYD 539
D IK W D
Sbjct: 299 ENDKTIKLWKSD 310
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ ++
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 300
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 74
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 75 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 131 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 184
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
V V+F LAA + +K WD
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 235
Query: 472 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 236 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 295
Query: 528 ATDGKIKAWLYD 539
D IK W D
Sbjct: 296 ENDKTIKLWKSD 307
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ ++
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 297
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 78
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 79 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 135 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 188
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
V V+F LAA + +K WD
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 239
Query: 472 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299
Query: 528 ATDGKIKAWLYD 539
D IK W D
Sbjct: 300 ENDKTIKLWKSD 311
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ ++
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 79
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 80 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 136 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 189
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
V V+F LAA + +K WD
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 240
Query: 472 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 241 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 300
Query: 528 ATDGKIKAWLYD 539
D IK W D
Sbjct: 301 ENDKTIKLWKSD 312
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ ++
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 302
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 78
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 79 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 135 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 188
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
V V+F LAA + +K WD
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
+L D V+ V +SP+G A + + L+ Y G L+ + G N+
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------TGHKNEKYC 239
Query: 472 SYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
+ N ++ +V+ ED ++ +W+ T +GH V S H ENI +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299
Query: 528 ATDGKIKAWLYD 539
D IK W D
Sbjct: 300 ENDKTIKLWKSD 311
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949
I G ED+ + I+N++ E+ KL+GH + A T N++ S+ ++
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 85 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
++W+ S +L D V+ V +SP+G A + + L+ Y G L+
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 234
Query: 458 EIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
+ G N+ + N ++ +V+ ED ++ +W+ T +GH V S
Sbjct: 235 ---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 514 CPHHKENIQFIFSTATDGKIKAWLYD 539
H ENI + D IK W D
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKSD 317
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945
I G ED+ + I+N++ E+ KL+GH + A T N++ S+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 84
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 85 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 141 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 194
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS- 479
V+ V +SP+G A + + L+ Y G L+ + G N+ + N ++
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTG 254
Query: 480 ---VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+V+ ED ++ +W+ T +GH V S H ENI + D IK W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 537 LYD 539
D
Sbjct: 315 KSD 317
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945
I G ED+ + I+N++ E+ KL+GH + A T N++ S+
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 83
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 84 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 140 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 193
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 253
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS- 479
V+ V +SP+G A + + L+ Y G L+ + G N+ + N ++
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTG 253
Query: 480 ---VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+V+ ED ++ +W+ T +GH V S H ENI + D IK W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 537 LYD 539
D
Sbjct: 314 KSD 316
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 879
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 179 RIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 880 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 940 NVLVSS 945
N++ S+
Sbjct: 297 NIIASA 302
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 95
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 96 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 152 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 205
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 265
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
++W+ S +L D V+ V +SP+G A + + L+ Y G L+
Sbjct: 191 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 245
Query: 458 EIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
+ G N+ + N ++ +V+ ED ++ +W+ T +GH V S
Sbjct: 246 ---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 514 CPHHKENIQFIFSTATDGKIKAWLYD 539
H ENI + D IK W D
Sbjct: 303 ACHPTENIIASAALENDKTIKLWKSD 328
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 879
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 191 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 880 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 940 NVLVSSG 946
N++ S+
Sbjct: 309 NIIASAA 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516
L++ H G V L +++ +V+ DR ++VWD G ++FEGH S V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAP-----------------GHSST 555
+NI++I + + D + W S D +D P GH ++
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615
+ S G + S + L+ W+ ++ G R + +D + R ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNT----LIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 616 AGDEFMIKFWDMDNVNLLASIDADGGL 642
A + I+ WD++N L ++ L
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTAL 354
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
Y +++ ++ D I++WD G Y +GH + V + + + +F+ S A DG
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL----RLSDKFLVSAAADGS 373
Query: 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562
I+ W ++ + Y S+ Y +D
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 29/207 (14%)
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516
L++ H G V L +++ +V+ DR ++VWD G ++FEGH S V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAP-----------------GHSST 555
+NI++I + + D + W S D +D P GH ++
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615
+ S G + S + L+ W+ ++ G R + +D + R ++
Sbjct: 273 VRTVSGHGNIVVSGSYDNT----LIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 616 AGDEFMIKFWDMDNVNLLASIDADGGL 642
A + I+ WD++N L+ ++ L
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTAL 354
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
Y +++ ++ D I++WD G Y +GH + V + + + +F+ S A DG
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL----RLSDKFLVSAAADGS 373
Query: 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562
I+ W ++ + Y S+ Y +D
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
++W+ S +L D V+ V +SP+G A + + L+ Y G L+
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 231
Query: 458 EIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
+ G N+ + N ++ +V+ ED ++ +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 514 CPHHKENIQFIFSTATDGKIKAWLYD 539
H ENI + D IK W D
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKSD 314
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 116/316 (36%), Gaps = 49/316 (15%)
Query: 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA----SAA 695
G +A ++F+ G LA S+ D IKI DG + +T+ S VA S
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNL 82
Query: 696 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS-R 752
+V A T + + G L + G SN NF I + ++S R
Sbjct: 83 LVSASDDKTLKIWDVSSGKCL-------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 753 IWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812
IW + + +C LP + + VS + + G I++ + + +
Sbjct: 136 IWDV----KTGKCLK-TLPAH--SDPVSAVHFNRDGSLIVSSSYDGL------------- 175
Query: 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLF 869
++W SG + I D NP V S N Y+++A+ K+ +
Sbjct: 176 ---------CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 870 NXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 929
+ I G ED+ + I+N++ E+ KL+GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 930 ITGLAFSNTLNVLVSS 945
+ A T N++ S+
Sbjct: 285 VISTACHPTENIIASA 300
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 879
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 177 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 880 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 940 NVLVSS 945
N++ S+
Sbjct: 295 NIIASA 300
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
++W+ S +L D V+ V +SP+G A + + L+ Y G L+
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 231
Query: 458 EIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
+ G N+ + N ++ +V+ ED ++ +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 514 CPHHKENI 521
H ENI
Sbjct: 289 ACHPTENI 296
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 115/271 (42%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + V+ C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG---KISLFNXXXXXXXXX 879
++W SG + I D NP V S N Y+++A+ K+ ++
Sbjct: 177 RIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 880 XXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939
I G ED+ + I+N++ E+ KL+GH + A T
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 940 NVLVSS 945
N++ S+
Sbjct: 295 NIIASA 300
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
++W+ S +L D V+ V +SP+G A + + L+ Y G L+
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 231
Query: 458 EIEAHVGSVNDLAFSYPNKQLS----VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
+ G N+ + N ++ +V+ ED ++ +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 514 CPHHKENIQFIFSTATDGKIKAWLYD 539
H ENI + D IK + D
Sbjct: 289 ACHPTENIIASAALENDKTIKLYKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS- 479
V+ V +SP+G A + + L+ Y G L+ + G N+ + N ++
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTG 251
Query: 480 ---VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+V+ ED ++ +W+ T +GH V S H ENI + D IK W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 537 LYD 539
D
Sbjct: 312 KSD 314
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946
I G ED+ + I+N++ E+ KL+GH + A T N++ S+
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV-YSICPHHKE 519
H V +AFS N+Q +V+ DR IK+W+ + K I EG E + C
Sbjct: 470 GHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527
Query: 520 NI--QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577
N I S + D +K W N R + +A S DG+ S G K+G
Sbjct: 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVV 585
Query: 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI 636
L W+ +EG K+ Y + + F + NR+ L A E IK WD+++ +++ +
Sbjct: 586 LL--WDLAEG--KKLYSLEANSVIHALCF--SPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Query: 637 DAD 639
D
Sbjct: 640 KVD 642
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 454
K+ KVW L C L+++L+ +T V+ V SPDG+L +V L+ G +L
Sbjct: 541 KTVKVWNLSNCK--LRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597
Query: 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
+ +EA+ ++ L FS PN+ + + IK+WD
Sbjct: 598 S---LEAN-SVIHALCFS-PNRYW--LCAATEHGIKIWD 629
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V+ V +SP+G + + ++ ++ + G + I H ++D+A+S +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSN 81
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L V+ +D+ +K+WD +G +GH + Y C + I S + D ++ W
Sbjct: 82 LL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D P HS + A ++ DG+ + S ++ +G + W+ + G +T
Sbjct: 138 --DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLI 191
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
V V+F LAA + +K WD L + + F+ G
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRT 685
VS +++ + + N +++ ++ T
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS- 479
V+ V +SP+G A + + L+ Y G L+ + G N+ + N ++
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK------TYTGHKNEKYCIFANFSVTG 251
Query: 480 ---VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+V+ ED ++ +W+ T +GH V S H ENI + D IK W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 537 LYD 539
D
Sbjct: 312 KSD 314
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D+N++ +D +++I++V + LKGH + F+ N++VS D VR
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946
I G ED+ + I+N++ E+ KL+GH + A T N++ S+
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
VV+ D ++VWD TG ++ GH + V + + + + + S A D +K W D
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV----QYDGRRVVSGAYDFMVKVW--D 265
Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599
+ GH++ + + DG + S ++ + W+ G T G
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSL----DTSIRVWDVETGNCIHTLTGHQSL 321
Query: 600 SVGVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQ-ASPCIRFNKEGILL 657
+ G+ K+ L +G+ + +K WD+ L ++ Q A C++FNK ++
Sbjct: 322 TSGM----ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI- 376
Query: 658 AVSTNDNGIKI--LANADGIRLLRTVES 683
S++D +K+ L + IR L T+ES
Sbjct: 377 -TSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
+V+ +D +KVW AVTG GH V+S ++NI I S +TD +K W +
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTLKVWNAE 187
Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599
+ GH+ST+ R+ S G+ ++ L W+ G G
Sbjct: 188 T--GECIHTLYGHTSTVRCMHLHEKRVVS-GSR---DATLRVWDIETGQCLHVLMG-HVA 240
Query: 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
+V VQ+D R ++ +FM+K WD + L ++
Sbjct: 241 AVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQG 277
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 25/210 (11%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520
HV +V Y ++ VV+ D ++KVWD T T + +GH + VYS
Sbjct: 237 GHVAAVR--CVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-------- 284
Query: 521 IQF----IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576
+QF + S + D I+ W D + GH S L S +
Sbjct: 285 LQFDGIHVVSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNILVS----GNAD 338
Query: 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN---VNLL 633
S + W+ G +T G K V KN + + D+ +K WD+ + L
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Query: 634 ASIDADGGLQASPCIRFNKEGILLAVSTND 663
++++ G IR + ++ AV + +
Sbjct: 399 VTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
+ G D+SI++++V L GHQ +G+ + N+LVS ADS V+
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVK 342
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQVR 952
+NI+ G DS+++I++++ + L+G HQ +T L F+ N +++S D V+
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVK 385
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
++ H V L F + VV+ D I+VWD TG + GH+S + K
Sbjct: 275 LQGHTNRVYSLQFD----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELK 328
Query: 519 ENIQFIFSTATDGKIKAW 536
+NI + S D +K W
Sbjct: 329 DNI--LVSGNADSTVKIW 344
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 23/186 (12%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
+H ++D Y +L+ TC DR +K++D G + I GHE PV+ + H
Sbjct: 11 SHEDMIHDAQMDYYGTRLA--TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP 68
Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS---ADGARLFSCGTNKEG 575
+ S + D K+ W +N ++ GH S++ + D + +CG++
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 576 ESYLVEWNESEGAVKR--TYHGLGKRSV----GVV----------QFDTTKNRFLAAGDE 619
S L E + VK+ H +G +V VV Q RF + G +
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 620 FMIKFW 625
+IK W
Sbjct: 189 NLIKLW 194
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489
GT S V ++ G ++ ++ H G V +A+++P + +C DR +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 490 KVWDAVTGT--KQYIFEGHESPVYSIC--PH 516
+W GT K + GH+S V S+C PH
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V +S DG + + ++ G++L L+I+AH V AFS +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS 677
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++ TC D+ +K+WD+ TG + ++ H V +K N + + + D +K W
Sbjct: 678 YIA--TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
+ R +S +S D L SC +
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+ +V + ++ DG + ++ ++ + GD ++ ++AH +V D ++
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQDSR 1064
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
LS D +KVW+ +TG + F H+ V S C + +F ST+ D K W
Sbjct: 1065 LLSW---SFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIW 1119
Query: 537 LYDNLGSRVDYDAPGHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEGAV 589
+D L ++ GH+ + A+S DG L + N E + WN S+G +
Sbjct: 1120 SFDLLSPL--HELKGHNGCVRCSAFSLDGILLATGDDNGE----IRIWNVSDGQL 1168
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 843 EDAVPCFALSKNDSYVMSASGG-KISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNN-II 900
ED V C A S +DSY+ + S K+ +++ + N+ ++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
A G D ++++++ E + + GH + FS +L S AD +R
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 129/357 (36%), Gaps = 77/357 (21%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA-VKSFKVWELGACSMPLQASLSS 415
S ++ DF P L V+ + V LW + SR ++A + W
Sbjct: 848 STIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSW--------------- 891
Query: 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475
V+ VM+SPDG+ F A + ++ E + + A V ++ +
Sbjct: 892 -----VHGVMFSPDGSSFLTASDDQTIRVW------ETKKVCKNSAIVLK-QEIDVVFQE 939
Query: 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535
+ V+ R +++ TG Y+ E S + PH ++++ DG IK
Sbjct: 940 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC-CLSPH----LEYVAFGDEDGAIKI 994
Query: 536 WLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTN--------KEGESYLVE---- 581
N +RV GH + + ++ADG L S + + G+ ++
Sbjct: 995 IELPN--NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1052
Query: 582 ------------------------WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617
WN G ++R + + +V + +F +
Sbjct: 1053 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTS 1111
Query: 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674
+ K W D ++ L + G C F+ +GILLA ++ I+I +DG
Sbjct: 1112 ADKTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617
+S DG R+ SCG +K + + E E +K + V F + +
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFSSDDSYIATCS 683
Query: 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKI 668
+ +K WD L+ + D + Q + C NK +LLA +ND +K+
Sbjct: 684 ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
QD IA D ++Q++ E +K H+ + AFS+ + + + AD +V+
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
+A G ED +I+I + + V + GH+K + + F+ L+SS DS ++
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1035
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 5/156 (3%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V +S DG + + ++ G++L L+I+AH V AFS +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDS 670
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++ TC D+ +K+WD+ TG + ++ H V +K N + + + D +K W
Sbjct: 671 YIA--TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
+ R +S +S D L SC +
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+ +V + ++ DG + ++ ++ + GD ++ ++AH +V D ++
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQDSR 1057
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
LS D +KVW+ +TG + F H+ V S C + +F ST+ D K W
Sbjct: 1058 LLSW---SFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIW 1112
Query: 537 LYDNLGSRVDYDAPGHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEGAV 589
+D L ++ GH+ + A+S DG L + N E + WN S+G +
Sbjct: 1113 SFDLLSPL--HELKGHNGCVRCSAFSLDGILLATGDDNGE----IRIWNVSDGQL 1161
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 843 EDAVPCFALSKNDSYVMSASGG-KISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNN-II 900
ED V C A S +DSY+ + S K+ +++ + N+ ++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
A G D ++++++ E + + GH + FS +L S AD +R
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 129/357 (36%), Gaps = 77/357 (21%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA-VKSFKVWELGACSMPLQASLSS 415
S ++ DF P L V+ + V LW + SR ++A + W
Sbjct: 841 STIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSW--------------- 884
Query: 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475
V+ VM+SPDG+ F A + ++ E + + A V ++ +
Sbjct: 885 -----VHGVMFSPDGSSFLTASDDQTIRVW------ETKKVCKNSAIVLK-QEIDVVFQE 932
Query: 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535
+ V+ R +++ TG Y+ E S + PH ++++ DG IK
Sbjct: 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC-CLSPH----LEYVAFGDEDGAIKI 987
Query: 536 WLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTN--------KEGESYLVE---- 581
N +RV GH + + ++ADG L S + + G+ ++
Sbjct: 988 IELPN--NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045
Query: 582 ------------------------WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617
WN G ++R + + +V + +F +
Sbjct: 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTS 1104
Query: 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674
+ K W D ++ L + G C F+ +GILLA ++ I+I +DG
Sbjct: 1105 ADKTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617
+S DG R+ SCG +K + + E E +K + V F + +
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-----HEDEVLCCAFSSDDSYIATCS 676
Query: 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKI 668
+ +K WD L+ + D + Q + C NK +LLA +ND +K+
Sbjct: 677 ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
QD IA D ++Q++ E +K H+ + AFS+ + + + AD +V+
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
+A G ED +I+I + + V + GH+K + + F+ L+SS DS ++
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 122/309 (39%), Gaps = 71/309 (22%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T +V +S DG + + ++ G++L LEI+AH V AFS ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL---LEIKAHEDEVLCCAFSTDDR 676
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV----YSICPHH--------------- 517
+ TC D+ +K+W+++TG + ++ H V ++ HH
Sbjct: 677 --FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 518 ----KENIQFIF-------------------STATDGKIKAWLYDNLGSR---------V 545
KE +F S + DG +K W + R +
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFL 794
Query: 546 DYDAPGHSSTMM----AYSADGARLFSCGTNKEGESYLVEWNESE--GAVKRTYHGLGKR 599
+ + P ++ ++SADGAR+ NK +L + + S G + +H
Sbjct: 795 NLEDPQEDMEVIVKCCSWSADGARIMVAAKNK---IFLFDIHTSGLLGEIHTGHHS---- 847
Query: 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659
++ F + + A ++ ++ W+ D+ + +A D G L + F+ +G
Sbjct: 848 TIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVA--DCRGHLSWVHGVMFSPDGSSFLT 905
Query: 660 STNDNGIKI 668
S++D I++
Sbjct: 906 SSDDQTIRL 914
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV 545
D +KVW+ +TG K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPL- 1126
Query: 546 DYDAPGHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEGAV 589
++ GH+ + A+S D L + N E + WN S G +
Sbjct: 1127 -HELRGHNGCVRCSAFSVDSTLLATGDDNGE----IRIWNVSNGEL 1167
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 50/330 (15%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW--ELGACSMPLQASLS 414
S V + FHPV +++ + + KVW E G L+
Sbjct: 109 SPVTRVIFHPVFSVMVSASEDA-----------------TIKVWDYETGDFERTLKG--- 148
Query: 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474
+T SV + + G L + + L+ + G + +R + +V SV+ + P
Sbjct: 149 --HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM----P 202
Query: 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK 534
N +V+ D+ IK+W+ TG F GH V + P+ ++ I S + D ++
Sbjct: 203 NGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVR 259
Query: 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADG-----ARLFSCGTNKEG-----------ESY 578
W+ + + H ++++ + + T K G +
Sbjct: 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
+ W+ S G T G GV+ F + L+ D+ ++ WD N + +++A
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
S + F+K + + D +K+
Sbjct: 379 HEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 31/55 (56%)
Query: 898 NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
+++ ED++I++++ + + LKGH + ++F ++ +L S AD ++
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 52/254 (20%)
Query: 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQ-ASL 413
Q A+ S+DF P + ++ G++ V ++E P + S
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------------------GPPFKFKST 185
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGS 465
++T V+ V ++PDG+LF + LY G D L+N AH GS
Sbjct: 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN----VAHSGS 241
Query: 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI---- 521
V L +S +++ + D+ IK+W+ T + PV + + I
Sbjct: 242 VFGLTWSPDGTKIA--SASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTK 294
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYL 579
Q + S + +G I ++ LGS +D GH+ T ++ SADG LFS + E ++
Sbjct: 295 QALVSISANGFIN-FVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSA----DAEGHI 348
Query: 580 VEWNESEGAVKRTY 593
W+ S G R +
Sbjct: 349 NSWDISTGISNRVF 362
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 896 DNNIIAIGMEDSSIQIYNV---RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQV 951
D +A+G +DS + +Y + V EVKT + H IT +AFSN LV++ +V
Sbjct: 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 43/238 (18%)
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
N S+VK++ F+ Q +L G N G++ +W++ K E + PL
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN----------KCTESPSNYTPLTPGQ 160
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
S +SV+ V+ +A+++ + H++ G + +++A V L+++
Sbjct: 161 S---MSSVDEVI--------SLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVIHLSYTS 208
Query: 474 PN----KQLSVVT--------------CGEDRVIKVWDAVTGTK--QYIFEGHESPVYSI 513
PN +QLSVV D I +WD Q + +GH+ + S+
Sbjct: 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268
Query: 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571
H++ + S+ D + W ++ + A G+ ++ + LF+C +
Sbjct: 269 DWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC- 514
H + H V+DLA S N ++ D+ +++WD TGT F GH+S VYS+
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 515 -PHHKENIQFIFSTATDGKIKAW 536
P +++ I S + +IK W
Sbjct: 127 SPDNRQ----ILSAGAEREIKLW 145
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
Q+N D +++++++R + GHQ + +AFS ++S+GA+ +++
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424
HP + + G +L G RI ++W S ++ LS + +V +V
Sbjct: 14 HPDSRCWFLAWNPAG-TLLASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484
WSP G A ++ D+ +E H V +A++ P+ L + TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWA-PSGNL-LATCS 124
Query: 485 EDRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
D+ + VW+ V +Y + H V + H + + + S + D +K + +
Sbjct: 125 RDKSVWVWE-VDEEDEYECVSVLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEE 181
Query: 541 LGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNK 573
GH ST+ +A+ G RL SC ++
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 454
KS VWE+ S+ + +T V V+W P L A V LY D+
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWV 185
Query: 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502
+E H +V LAF ++L+ +C +DR +++W +QY+
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLA--SCSDDRTVRIW------RQYL 225
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
VV+ D I++WD G + EGHE V I +K I S A DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW--- 361
Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLF 567
+L + +D AP + + R+F
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVF 389
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
+V+ D IK+WD T + I GH V +C + E + I + ++D ++ W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDV- 200
Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN---ESEGAVKRTYHGL 596
N G ++ H ++ + + +C ++ + W+ ++ ++R G
Sbjct: 201 NTGEMLN-TLIHHCEAVLHLRFNNGMMVTCSKDRS----IAVWDMASPTDITLRRVLVG- 254
Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656
+ +V VV FD K A+GD IK W+ + ++ +G + C+++ L
Sbjct: 255 HRAAVNVVDFD-DKYIVSASGDR-TIKVWNTSTCEFVRTL--NGHKRGIACLQYRDR--L 308
Query: 657 LAVSTNDNGIKILANADG--IRLL----RTVESRTFDASRVASAA 695
+ ++DN I++ G +R+L V FD R+ S A
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 353
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 418 TASVNRVMWSPDGTLFGVAYSKHI---------VHLYTYHGGDELRNHLEIEAHVGSVND 468
T R++ G++ + Y + + V ++ + G+ L + H +V
Sbjct: 162 TLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH---HCEAVLH 218
Query: 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSICPHHKENIQFIF 525
L F+ N + VTC +DR I VWD + T + + GH + V + + ++I
Sbjct: 219 LRFN--NGMM--VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIV 270
Query: 526 STATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585
S + D IK W + + Y RL G++ ++ + W+
Sbjct: 271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNTIRLWDIE 324
Query: 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627
GA R G + V ++FD R ++ + IK WD+
Sbjct: 325 CGACLRVLEG-HEELVRCIRFD--NKRIVSGAYDGKIKVWDL 363
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944
D +I G DS++++++V E+ L H + + L F+N + V S
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS 230
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
AH ++D Y K+L+ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 519 ENIQFIFSTATDGKIKAWLYDN 540
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVLIWKEEN 86
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 40/196 (20%)
Query: 365 HPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422
HP +L + G V++W E G +IAV + ++ASVN
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-------------------HSASVN 103
Query: 423 RVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-------- 472
V W+P G L VA S V + + + + I+AH VN +++
Sbjct: 104 SVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 473 ---YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVYSICPHHKENIQ-FI 524
+ VT G D ++K+W DA T + EGH V + ++ ++
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222
Query: 525 FSTATDGKIKAWLYDN 540
S + D W DN
Sbjct: 223 ASVSQDRTCIIWTQDN 238
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
AH ++D Y K+L+ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 9 AHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 66
Query: 519 ENIQFIFSTATDGKIKAWLYDN 540
+ + S + DGK+ W +N
Sbjct: 67 KFGTILASCSYDGKVLIWKEEN 88
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 40/210 (19%)
Query: 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMP 408
+T ++G + HP +L + G V++W E G +IAV +
Sbjct: 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV----------- 99
Query: 409 LQASLSSDYTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
++ASVN V W+P G L VA S V + + + + + I+AH V
Sbjct: 100 --------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGV 150
Query: 467 NDLAFS-----------YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVY 511
N +++ + VT G D ++K+W DA T + EGH V
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 210
Query: 512 SICPHHKENIQ-FIFSTATDGKIKAWLYDN 540
+ ++ ++ S + D W DN
Sbjct: 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSICPHHKENIQFIFSTATDG 531
+PN+Q V T G+D ++ +WD GT + + HE+ ++ + H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 532 KIKAW 536
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
AH ++D Y K+L+ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 519 ENIQFIFSTATDGKIKAWLYDN 540
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVLIWKEEN 86
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMP 408
+T ++G + HP +L + G V++W E G +IAV +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV----------- 97
Query: 409 LQASLSSDYTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
++ASVN V W+P G L VA S V + + + + + I+AH V
Sbjct: 98 --------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGV 148
Query: 467 NDLAFS-----------YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVY 511
N +++ + VT G D ++K+W DA T + EGH V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 512 SIC 514
+
Sbjct: 209 DVA 211
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
AH ++D Y K+++ TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 519 ENIQFIFSTATDGKIKAWLYDN 540
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVMIWKEEN 86
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW--EVGSRERIAVKSFKVWELGACSMP 408
+T ++G + HP +L + G VM+W E G +IAV +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV----------- 97
Query: 409 LQASLSSDYTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
++ASVN V W+P G + VA S V + + + + + I+AH V
Sbjct: 98 --------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGV 148
Query: 467 NDLAFS-----------YPNKQLSVVTCGEDRVIKVW----DAVTGTKQYIFEGHESPVY 511
N +++ + VT G D ++K+W DA T + EGH V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 512 SIC 514
+
Sbjct: 209 DVA 211
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
N+ VK +DFHP + +L + G V LW + ++ V+S +V E P++A
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYET--QVEVRSIQVTE-----TPVRA-- 60
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
+ A N ++ V + ++ Y+ G+++ ++ EAH + +A +
Sbjct: 61 -GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIAV-H 106
Query: 474 PNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
P K V++ +D +K+W+ + FEGHE V + + K+ F S D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 533 IKAW 536
+K W
Sbjct: 165 VKVW 168
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++T +D IK+WD T + EGH S V H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
N+ VK +DFHP + +L + G V LW + ++ V+S +V E P++A
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYET--QVEVRSIQVTE-----TPVRA-- 60
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
+ A N ++ V + ++ Y+ G+++ ++ EAH + +A +
Sbjct: 61 -GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIAV-H 106
Query: 474 PNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
P K V++ +D +K+W+ + FEGHE V + + K+ F S D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 533 IKAW 536
+K W
Sbjct: 165 VKVW 168
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++T +D IK+WD T + EGH S V H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIW 255
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 32/155 (20%)
Query: 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY-------TY 447
K+ KVW+ G+ LQA +S + A V V +S + F A + + L+ T+
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKV--VSFSENK--FLTASADKTIKLWQNDKVIKTF 179
Query: 448 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507
G H ++ H+ V+D F ++C D +IK+ D TG +EGHE
Sbjct: 180 SG-----IHNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 508 SPVYSI--CPHHKENIQFIFSTATDGKIKAWLYDN 540
S VY I P+ I S D ++ W +N
Sbjct: 226 SFVYCIKLLPNGD-----IVSCGEDRTVRIWSKEN 255
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K 499
++ L H GD LR + E+ V + L PN +V+CGEDR +++W G+ K
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLL----PNG--DIVSCGEDRTVRIWSKENGSLK 259
Query: 500 QYI 502
Q I
Sbjct: 260 QVI 262
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHK 518
AH ++D Y K+ + TC D+ IK+++ T + I GHE PV+ + H
Sbjct: 7 AHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 519 ENIQFIFSTATDGKIKAWLYDN 540
+ + S + DGK+ W +N
Sbjct: 65 KFGTILASCSYDGKVXIWKEEN 86
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 372 LVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPL------------------- 409
L VGT+ +V LW+V ++R+ S +V L S L
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 410 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE-IEAHVGSVND 468
+ S ++ V + W+PDG + ++V+++ G+ L+ H G+V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 469 LAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFI 524
+A+ P + + T G DR I++W+ +G + H S V SI PH+KE I
Sbjct: 293 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS-- 348
Query: 525 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY--SADGARLFSCGTNK 573
++ W Y + + GH+S +++ S DGA + S ++
Sbjct: 349 GHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADE 397
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 518
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
N+ VK +DFHP + +L G V LW ++ V+S +V E P++A
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTT-LYSGRVELWNY--ETQVEVRSIQVTE-----TPVRA-- 60
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
+ A N ++ V + ++ Y+ G+++ ++ EAH + +A +
Sbjct: 61 -GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIAV-H 106
Query: 474 PNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
P K V++ +D +K+W+ + FEGHE V + + K+ F S D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 533 IKAW 536
+K W
Sbjct: 165 VKVW 168
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++T +D IK+WD T + EGH S V S H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHP-TLPIIISGSEDGTLKIW 255
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 518
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 518
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 372 LVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPL------------------- 409
L VGT+ +V LW+V ++R+ S +V L S L
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 410 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE-IEAHVGSVND 468
+ S ++ V + W+PDG + ++V+++ G+ L+ H G+V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 469 LAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFI 524
+A+ P + + T G DR I++W+ +G + H S V SI PH+KE I
Sbjct: 282 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS-- 337
Query: 525 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNK 573
++ W Y + + GH+S +++ S DGA + S ++
Sbjct: 338 GHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADE 386
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 518
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 518
VG +D+ +K+ S++ G D+ IKVW + G GH V + P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 212
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 213 EIML--WNL---AAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 260
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D+ +++WD TG F GH+S V S+ K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 128
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
N+ VK +DFHP + +L G V +W ++ V+S +V E P++A
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTT-LYSGRVEIWNY--ETQVEVRSIQVTE-----TPVRA-- 60
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
+ A N ++ V + ++ Y+ G+++ ++ EAH + +A +
Sbjct: 61 -GKFIARKNWII---------VGSDDFRIRVFNYNTGEKV---VDFEAHPDYIRSIAV-H 106
Query: 474 PNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
P K V++ +D +K+W+ + FEGHE V + + K+ F S D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 533 IKAW 536
+K W
Sbjct: 165 VKVW 168
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++T +D IK+WD T + EGH S V S H + I S + DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNV-SFAVFHP-TLPIIISGSEDGTLKIW 255
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHK- 518
VG +D+ +K+ S + G D+ IKVW + G GH V + P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
++ I S D +KAW + +++ D GH+S + + S DG + S G K+G
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAG--KDG 218
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628
E L WN A K+ + L + V + NR+ LAA IK + +D
Sbjct: 219 EIXL--WNL---AAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLD 266
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D+ +++WD TG F GH+S V S+ K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW 134
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485
W+ D T + + H VH+Y G ++ H E++ H G V + ++ + + +VTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 486 DRVIKVW 492
DR VW
Sbjct: 73 DRNAYVW 79
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520
H G ++ L F+ NK L ++ +D +++W G Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-ADGARLFSCGTNKEGESYL 579
+ S + DG ++ W +T++A S DG +F+ +++G+ Y
Sbjct: 303 ---VISCSMDGSVRLWSL-------------KQNTLLALSIVDGVPIFAGRISQDGQKYA 346
Query: 580 V 580
V
Sbjct: 347 V 347
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485
W+ D T + + H VH+Y G ++ H E++ H G V + ++ + + +VTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 486 DRVIKVW 492
DR VW
Sbjct: 73 DRNAYVW 79
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 663
N+ A G F+I WDM N++ LL +I ADG + A P + R KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 664 NG 665
+G
Sbjct: 107 SG 108
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 387 GSRERIAVKSFKVWE-LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY 445
GSR+ K+ K+W LG C +Q S++ + V S + + + K +V ++
Sbjct: 123 GSRD----KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVW 177
Query: 446 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505
NH+ H G +N + S P+ L + G+D +WD G Y +G
Sbjct: 178 NLANCKLKTNHI---GHTGYLNTVTVS-PDGSL-CASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 506 HESPVYSIC--PHHKENIQFIFSTATDGKIKAW------LYDNLGSRV---DYDAPGHSS 554
+ + ++C P+ ++ AT IK W + D L V A
Sbjct: 233 GD-IINALCFSPN-----RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 286
Query: 555 TMMAYSADGARLFS 568
T +A+SADG LF+
Sbjct: 287 TSLAWSADGQTLFA 300
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SR 544
D +++WD TGT F GH V S+ +N Q I S + D IK W + LG +
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 545 VDYDAPGHSS--TMMAYSADGAR--LFSCGTNKEGESYLVE-WNESEGAVKRTYHGLGKR 599
HS + + +S + + + SCG +K LV+ WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG-HTG 193
Query: 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
+ V + + G + WD++ L ++D G + + C N+ + A
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAA 251
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 387 GSRERIAVKSFKVWE-LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLY 445
GSR+ K+ K+W LG C +Q S++ + V S + + + K +V ++
Sbjct: 146 GSRD----KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-LVKVW 200
Query: 446 TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505
NH+ H G +N + S P+ L + G+D +WD G Y +G
Sbjct: 201 NLANCKLKTNHI---GHTGYLNTVTVS-PDGSL-CASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 506 HESPVYSIC--PHHKENIQFIFSTATDGKIKAW------LYDNLGSRV---DYDAPGHSS 554
+ + ++C P+ ++ AT IK W + D L V A
Sbjct: 256 GD-IINALCFSPN-----RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 309
Query: 555 TMMAYSADGARLFS 568
T +A+SADG LF+
Sbjct: 310 TSLAWSADGQTLFA 323
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SR 544
D +++WD TGT F GH V S+ +N Q I S + D IK W + LG +
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 545 VDYDAPGHSS--TMMAYSADGAR--LFSCGTNKEGESYLVE-WNESEGAVKRTYHGLGKR 599
HS + + +S + + + SCG +K LV+ WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG-HTG 216
Query: 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
+ V + + G + WD++ L ++D G + + C N+ + A
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAA 274
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 50/279 (17%)
Query: 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 454
++ VW A S + A +D + V V WS DG+ V +V +Y +LR
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 455 NHLEIEAHVG------------------------------------SVNDLAFSYPNKQL 478
+A VG S ++ + L
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFIFSTATDGKIKAW 536
+ + G D V+++WDA + ++ H + V ++ CP + N+ D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
G+RV+ G T + +S + S T+ ++ L W+ S + +
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIP 346
Query: 597 GKRSVGVVQFDTTKNRFL--AAGDEFMIKFW---DMDNV 630
+ + + R L AA DE +KFW D D+V
Sbjct: 347 AHDTRVLYSALSPDGRILSTAASDE-NLKFWRVYDGDHV 384
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 663
N+ A G F+I WDM N++ LL +I ADG + A P + + KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGA 106
Query: 664 NG 665
+G
Sbjct: 107 SG 108
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 333 QSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER- 391
Q L QS T D + + S+ +HP + VG+ GD+MLW G +++
Sbjct: 96 QGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP 155
Query: 392 --------------IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GT 431
+ + A SM L D+ ++ RV S D +
Sbjct: 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL-QDFKGNILRVFASSDTINIWFCS 214
Query: 432 LFGVAYSKHIVH-------LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484
L A S+ +V + G EL N + H V +A + P + T
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWN---LRMHKKKVTHVALN-PCCDWFLATAS 270
Query: 485 EDRVIKVWD--AVTGTKQYIFE-GHESPVYSIC 514
D+ +K+WD V G +++ H PV + C
Sbjct: 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 372 LVVGTNMGDVMLWEVGSRERI---AVKSFKVWELGACSMPL------------------- 409
L VGT+ +V LW+V ++R+ S +V L S L
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 410 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE-IEAHVGSVND 468
+ S ++ V + W+PDG + ++V+++ G+ L+ H G+V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 469 LAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFI 524
+A+ P + + T G DR I++W+ +G + H S V SI PH+KE I
Sbjct: 202 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS-- 257
Query: 525 FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY--SADGARLFSCGTNK 573
++ W Y + + GH+S +++ S DGA + S ++
Sbjct: 258 GHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADE 306
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 333 QSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER- 391
Q L QS T D + + S+ +HP + VG+ GD+MLW G +++
Sbjct: 97 QGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP 156
Query: 392 --------------IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GT 431
+ + A SM L D+ ++ RV S D +
Sbjct: 157 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL-QDFKGNILRVFASSDTINIWFCS 215
Query: 432 LFGVAYSKHIVH-------LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484
L A S+ +V + G EL N + H V +A + P + T
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNMDGKELWN---LRMHKKKVTHVALN-PCCDWFLATAS 271
Query: 485 EDRVIKVWD--AVTGTKQYIFE-GHESPVYSIC 514
D+ +K+WD V G +++ H PV + C
Sbjct: 272 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 304
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 333 QSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER- 391
Q L QS T D + + S+ +HP + VG+ GD+MLW G +++
Sbjct: 96 QGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP 155
Query: 392 --------------IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------GT 431
+ + A SM L D+ ++ RV S D +
Sbjct: 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL-QDFKGNILRVFASSDTINIWFCS 214
Query: 432 LFGVAYSKHIVH-------LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484
L A S+ +V + G EL N + H V +A + P + T
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNMDGKELWN---LRMHKKKVTHVALN-PCCDWFLATAS 270
Query: 485 EDRVIKVWD--AVTGTKQYIFE-GHESPVYSIC 514
D+ +K+WD V G +++ H PV + C
Sbjct: 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF 525
+ + FS K L+ T EDR+I++WD I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 526 STATDGKIKAW----------LYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKE 574
S + D ++ W L G +PG + A S D A R++ T
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--- 238
Query: 575 GESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631
+LVE +SE G G K SV V F ++ + +K W++ N N
Sbjct: 239 --GFLVERLDSENE-----SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D +A G ED I+I+++ ++ L+GH++ I L + + + LVS D VR
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 67/264 (25%)
Query: 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI---- 513
+E H V+D+A S N V+ D +++W+ G QY F GH V S+
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 514 ----------------------CPH------HKENIQ-----------FIFSTATDGKIK 534
C H H + + I S D +K
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 535 AWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592
W D R+ D GH++ T + S DG+ S ++K+G + L W+ ++G
Sbjct: 180 VW--DLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL--WDLTKG----- 228
Query: 593 YHGLGKRSVG--VVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI--DADGGLQASP- 646
L + + G + Q + NR+ + A E I+ +D++N +++ + + G + P
Sbjct: 229 -EALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 647 C--IRFNKEGILLAVSTNDNGIKI 668
C I ++ +G L DN I++
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRV 311
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 396 SFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 453
S ++W L G C +T V V +SPD + + ++ G E
Sbjct: 90 SLRLWNLQNGQCQYKFLG-----HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG--EC 142
Query: 454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
+ L AH V+ + FS +V+ G D ++KVWD TG +GH + V S+
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 906 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952
D S++++N++ + + K GH K + +AFS +VS G D+ +R
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKG-HQKRITGLAFSNTLN--VLVSSGADSQVR 952
DN I G D++++++NV+ + + T +G H ++ + FS +L+ V+VS G D+ V+
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 663
N+ A G F+I WDM N++ LL +I ADG + A P + + KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGA 106
Query: 664 NG 665
+G
Sbjct: 107 SG 108
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581
F+T +D L+D R D + +M YS D CG
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 283
Query: 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 638
+ V F + LA D+F WD D +LA D
Sbjct: 284 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 323
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
C+ +G+ +A + D+ +KI
Sbjct: 324 ----NRVSCLGVTDDGMAVATGSWDSFLKI 349
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCI----RFNKEGILLAVSTND 663
N+ A G F+I W +MD + LL +I ADG + A P + R KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + R KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 638
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 638
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I WDM N++ LL +I ADG + A P + KE I+ A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGA 106
Query: 664 NG 665
+G
Sbjct: 107 SG 108
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 638
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 57/210 (27%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
H G V L+ + P+ +L V+ D K+WD G + F GHES + +IC N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581
F+T +D L+D R D + +M YS D CG
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDN---IICG----------- 272
Query: 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD---MDNVNLLASIDA 638
+ V F + LA D+F WD D +LA D
Sbjct: 273 -------------------ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
C+ +G+ +A + D+ +KI
Sbjct: 313 ----NRVSCLGVTDDGMAVATGSWDSFLKI 338
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 23/225 (10%)
Query: 320 NLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGS---AVKSMDFHPVQQILLVVGT 376
+ S IL T + + S DD T++ L++ + A++S+ + P LL G+
Sbjct: 21 DFSQGILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRP-HTSLLAAGS 77
Query: 377 NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436
V +W ++E A ++F+ M L A + + V V WS DG
Sbjct: 78 FDSTVSIW---AKEESADRTFE--------MDLLAIIEG-HENEVKGVAWSNDGYYLATC 125
Query: 437 YSKHIVHLY-TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495
V ++ T G+E ++ H V + + +P++ L + + D +++W
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEAL-LASSSYDDTVRIWKDY 183
Query: 496 TGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
+ + GHE V+S E + + S + D ++ W Y
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 535 AWLYDNLG--SRVDYDAP---GHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEG 587
A+L LG RVD + P GH++ ++ A+ + + G+ + ++ W +G
Sbjct: 58 AFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSE---DCTVMVWEIPDG 114
Query: 588 AVKR-------TYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639
+ T G KR VG+V + T +N L+AG + +I WD+ + ++ D
Sbjct: 115 GLVLPLREPVITLEGHTKR-VGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD 173
Query: 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 699
+ ++++G L+ S D ++++ G + + R + +R A V
Sbjct: 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE--KDRPHEGTRPVHAVFVSE 231
Query: 700 PAIGTFG 706
I T G
Sbjct: 232 GKILTTG 238
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPVYSI 513
+ +E H V +A+ +P Q +++ G D VI VWD TG + H +YS+
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 535 AWLYDNLG--SRVDYDAP---GHSSTMM--AYSADGARLFSCGTNKEGESYLVEWNESEG 587
A+L LG RVD + P GH++ ++ A+ + + G+ + ++ W +G
Sbjct: 58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEIPDG 114
Query: 588 AVKR-------TYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639
+ T G KR VG+V + T +N L+AG + +I WD+ + ++ D
Sbjct: 115 GLVLPLREPVITLEGHTKR-VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173
Query: 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 699
+ ++++G L+ S D ++++ G + + R + +R A V
Sbjct: 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE--KDRPHEGTRPVHAVFVSE 231
Query: 700 PAIGTFG 706
I T G
Sbjct: 232 GKILTTG 238
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPVYSI 513
+ +E H V +A+ +P Q +++ G D VI VWD TG + H +YS+
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPC----IRFNKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 104
Query: 664 NG 665
+G
Sbjct: 105 SG 106
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 104
Query: 664 NG 665
+G
Sbjct: 105 SG 106
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 101
Query: 664 NG 665
+G
Sbjct: 102 SG 103
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRF----NKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFW---DMDNVNLLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W +MD + LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 99
Query: 664 NG 665
+G
Sbjct: 100 SG 101
>pdb|2B1X|B Chain B, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|D Chain D, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|F Chain F, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|D Chain D, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|F Chain F, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 172
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDN 66
E +++ + LD K++E + + +D + +R E + V + G T +DD+
Sbjct: 17 EWLYMEAELLDAGKYREWLALVTEDLSYVVPIR------VTREREAVTDVVEGMTHMDDD 70
Query: 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119
SM++ + +Y A D R++ V +++V + +ED FK + LL
Sbjct: 71 ADSMEMRVLRLETEYAWAEDPPSRSRH---FVTNVRVATGDSEDEFKVTSNLL 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 33.1 bits (74), Expect = 0.77, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCI----RFNKEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE I+ A
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGA 99
Query: 664 NG 665
+G
Sbjct: 100 SG 101
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667
N+ A G F+I W+M N++ LL +I ADG + A P +++ + IK
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPV-------LMVTAEADAENIK 96
Query: 668 ILANA 672
LA A
Sbjct: 97 ALAQA 101
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 395 KSFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE 452
K VW++ G C + + + VN V + P G F LY E
Sbjct: 220 KKAMVWDMRSGQCVQAFET-----HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 453 LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512
+ + + E+ + + + FS + L D I VWD + G++ I GHE+ V +
Sbjct: 275 VAIYSK-ESIIFGASSVDFSLSGRLLFAGY--NDYTINVWDVLKGSRVSILFGHENRVST 331
Query: 513 I 513
+
Sbjct: 332 L 332
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 470 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 529
A S+ N + ++T D +WD +G F GH + V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 530 DGKIKAW 536
D K W
Sbjct: 219 DKKAMVW 225
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 61/242 (25%)
Query: 344 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV--------- 394
++P + V+T ++G A S + P Q+ L+ G+ +LW+V + +RI++
Sbjct: 146 NMPVSRVLTGHKGYA-SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204
Query: 395 -----------------------KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431
+ ++W+L S ++ + +N V + PDG
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT--YHGHEGDINSVKFFPDGQ 262
Query: 432 LFGVAYSKHIVHLYTYHGGDEL--------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTC 483
FG L+ G +L RN E+ V +AFS + L
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI----VTSVAFSISGRLLFAGYS 318
Query: 484 GEDRVIKVWDAV-------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
D VWD + GT Q EG S C + + + + D +K W
Sbjct: 319 NGD--CYVWDTLLAEMVLNLGTLQNSHEGRIS-----CLGLSSDGSALCTGSWDKNLKIW 371
Query: 537 LY 538
+
Sbjct: 372 AF 373
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519
+AHV + L F +P+ + ++++ +D +K+W G+ GH + V I +
Sbjct: 133 QAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 520 NIQFIFSTATDGKIKAW 536
+ + S + DG I+ W
Sbjct: 191 --RNVLSASLDGTIRLW 205
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 24/149 (16%)
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
++D +Q ++GT GD+ + + + LQ + + +
Sbjct: 98 AVDTAKLQMRRFILGTTEGDIKVLD-------------------SNFNLQREIDQAHVSE 138
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
+ ++ + P G + + +++ G R + H +V D+A ++ +V
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAI--IDRGRNV 193
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
++ D I++W+ TGT + F E+P
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENP 222
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I ADG + A P + KE ++ A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519
+AHV + L F +P+ + ++++ +D +K+W G+ GH + V I +
Sbjct: 136 QAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 520 NIQFIFSTATDGKIKAW 536
+ + S + DG I+ W
Sbjct: 194 --RNVLSASLDGTIRLW 208
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 24/149 (16%)
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
++D +Q ++GT GD+ + + + LQ + + +
Sbjct: 101 AVDTAKLQMRRFILGTTEGDIKVLD-------------------SNFNLQREIDQAHVSE 141
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
+ ++ + P G + + +++ G R + H +V D+A ++ +V
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAI--IDRGRNV 196
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
++ D I++W+ TGT + F E+P
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENP 225
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC 405
P + T + D V + ++V ++ G V LWE+ +E + V F +E
Sbjct: 82 PNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDI 141
Query: 406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 465
L S+ SD T +V+ G +S V ++ L+++ AH
Sbjct: 142 VKTL--SVFSDGTQAVSG----------GKDFS---VKVWDLSQKAVLKSY---NAHSSE 183
Query: 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
VN +A + P K ++CGED I +WD
Sbjct: 184 VNCVA-ACPGKDTIFLSCGEDGRILLWD 210
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 893 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936
HP+ ++ A G E ++ + N++ + H + ITGLA+S
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI--CPHHKENIQFIFSTATDGKIKAW-- 536
V+ G+D +KVWD + H S V + CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570
+R+D+ A T + + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|1JHL|A Chain A, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 129
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 405 CSMPLQASLSSDYTASVN---RVMWSPDGTLFGVAYSKH 440
C +P A LSSD TASVN +++ DG VA+ KH
Sbjct: 76 CHIPCSALLSSDITASVNCAKKIVSDGDGMNAWVAWRKH 114
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I AD + A P + KE I+ A
Sbjct: 44 NKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGA 103
Query: 664 NG 665
+G
Sbjct: 104 SG 105
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 611 NRFLAAGDEFMIKFWDMDNVN---LLASIDADGGLQASPCIRFN----KEGILLAVSTND 663
N+ A G F+I W+M N++ LL +I AD + A P + KE I+ A
Sbjct: 43 NKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGA 102
Query: 664 NG 665
+G
Sbjct: 103 SG 104
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/148 (17%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
+ V + F+P + +L G+ V LW++ + ++ + SF+
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFE-----------------S 319
Query: 417 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVG 464
+ + +V WSP + T+ + + +H++ E ++ + E H
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Query: 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVW 492
++D +++ PN+ + + ED +++VW
Sbjct: 380 KISDFSWN-PNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/148 (17%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
+ V + F+P + +L G+ V LW++ + ++ + SF+
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFE-----------------S 321
Query: 417 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVG 464
+ + +V WSP + T+ + + +H++ E ++ + E H
Sbjct: 322 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Query: 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVW 492
++D +++ PN+ + + ED +++VW
Sbjct: 382 KISDFSWN-PNEPWIICSVSEDNIMQVW 408
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWE 385
V S+++HP + VG+ GD++LW+
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWE 385
V S+++HP + VG+ GD++LW+
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/148 (18%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
+ V + F+P + +L G+ A K+ +W+L + L + S
Sbjct: 282 AEVNCLSFNPYSEFILATGS----------------ADKTVALWDLRNLKLKLHSFES-- 323
Query: 417 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVG 464
+ + +V WSP + T+ + + +H++ E ++ + E H
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Query: 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVW 492
++D +++ PN+ + + ED +++VW
Sbjct: 384 KISDFSWN-PNEPWIICSVSEDNIMQVW 410
>pdb|1WTJ|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|1WTJ|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Pvar.Tomato
pdb|2CWF|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWF|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
pdb|2CWH|A Chain A, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
pdb|2CWH|B Chain B, Crystal Structure Of Delta1-Piperideine-2-Carboxylate
Reductase From Pseudomonas Syringae Complexed With Nadph
And Pyrrole-2-Carboxylate
Length = 343
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 203 TCGQPNGARAPSPVTNPLMGAVPKAGAFP 231
TC P+GAR P TNP+ P+AG P
Sbjct: 152 TCVVPHGARQPLFGTNPIAFGAPRAGGEP 180
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQV 951
II++ + D ++ Y + DEV + GH K IT L T+N L+S D ++
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRI 359
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQV 951
II++ + D ++ Y + DEV + GH K IT L T+N L+S D ++
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRI 359
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 41 FEDMVTNGEWDEVEKYLSGFTKVDDN--RYSMKIFFEIRKQKYLEALDKRDR------AK 92
F + +G ++ YL F + + + S K+ + +LEAL R +K
Sbjct: 78 FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISK 137
Query: 93 AVEILVKDLKVFSAFNEDLFKEITQL 118
A E K KVF FN DL +E+ L
Sbjct: 138 AEEEFQKAQKVFEEFNVDLQEELPSL 163
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 65 DNRYSMKIFFE----IRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL- 119
D + +KIF+ +R + LEA RDR EIL++D + S +++I Q+L
Sbjct: 411 DLTHRIKIFYLWPRILRXEWNLEAYISRDRKVLEEILIRDPRTKS------YEQIVQVLD 464
Query: 120 TLENFRDNEQLSKYGDTK 137
+ N NE+L +Y K
Sbjct: 465 EIFNLPFNEELRRYYKEK 482
>pdb|1GHL|A Chain A, The Three-Dimensional Structure Of Pheasant And
Guinea-Fowl Egg Lysozymes
pdb|1GHL|B Chain B, The Three-Dimensional Structure Of Pheasant And
Guinea-Fowl Egg Lysozymes
Length = 130
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 405 CSMPLQASLSSDYTASVN---RVMWSPDGTLFGVAYSKH 440
C +P A LSSD TASVN +++ +G VA+ KH
Sbjct: 77 CHIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRKH 115
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 463 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQ 522
+ +VN +AF + L+ V G D WD TK E + P+ + C +H NI
Sbjct: 273 IYAVNGIAFHPVHGTLATV--GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI- 329
Query: 523 FIFSTATD 530
F ++++ D
Sbjct: 330 FAYASSYD 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,734,309
Number of Sequences: 62578
Number of extensions: 1149539
Number of successful extensions: 3142
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2635
Number of HSP's gapped (non-prelim): 407
length of query: 954
length of database: 14,973,337
effective HSP length: 108
effective length of query: 846
effective length of database: 8,214,913
effective search space: 6949816398
effective search space used: 6949816398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)