Query 002196
Match_columns 954
No_of_seqs 971 out of 4199
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 18:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 7.7E-69 1.7E-73 520.9 35.3 491 5-674 17-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.4E-66 5.1E-71 487.5 31.9 489 4-670 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 1.7E-54 3.7E-59 452.1 39.9 529 325-953 65-615 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.2E-53 2.5E-58 445.8 41.8 530 328-953 25-573 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.3E-49 2.9E-54 399.2 54.0 531 353-953 56-598 (603)
6 KOG0291 WD40-repeat-containing 100.0 1.2E-48 2.6E-53 408.2 54.4 518 327-953 19-608 (893)
7 KOG0306 WD40-repeat-containing 100.0 6.7E-49 1.5E-53 409.9 47.3 495 355-953 64-660 (888)
8 KOG0291 WD40-repeat-containing 100.0 1.3E-47 2.9E-52 400.5 54.3 530 322-951 55-704 (893)
9 KOG0271 Notchless-like WD40 re 100.0 1.1E-50 2.4E-55 390.8 27.4 364 498-954 106-478 (480)
10 KOG0271 Notchless-like WD40 re 100.0 3.4E-50 7.5E-55 387.4 29.0 325 354-804 113-479 (480)
11 KOG0318 WD40 repeat stress pro 100.0 1.7E-46 3.8E-51 376.9 50.2 510 362-953 24-556 (603)
12 KOG0306 WD40-repeat-containing 100.0 7.6E-44 1.6E-48 372.2 43.8 486 367-952 33-617 (888)
13 KOG0273 Beta-transducin family 100.0 1.7E-42 3.7E-47 343.8 38.8 315 345-681 167-490 (524)
14 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-42 9.1E-47 336.7 22.9 284 353-670 172-458 (459)
15 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-42 1.8E-46 334.7 23.9 285 416-804 173-458 (459)
16 KOG1408 WD40 repeat protein [F 100.0 1.2E-39 2.5E-44 337.9 40.4 496 355-953 77-709 (1080)
17 KOG0276 Vesicle coat complex C 100.0 2.7E-38 5.8E-43 323.8 41.3 473 355-954 12-490 (794)
18 KOG0286 G-protein beta subunit 100.0 2.2E-38 4.8E-43 295.9 34.0 291 350-670 48-343 (343)
19 KOG0263 Transcription initiati 100.0 2.9E-38 6.3E-43 335.2 34.7 275 342-629 363-650 (707)
20 KOG0279 G protein beta subunit 100.0 5.4E-38 1.2E-42 291.7 32.0 297 349-672 7-313 (315)
21 KOG0286 G-protein beta subunit 100.0 1.4E-37 3.1E-42 290.5 33.3 249 413-674 50-305 (343)
22 KOG0315 G-protein beta subunit 100.0 5.9E-37 1.3E-41 279.6 31.3 295 522-936 11-309 (311)
23 KOG1408 WD40 repeat protein [F 100.0 3.3E-36 7E-41 312.4 37.5 502 318-916 74-714 (1080)
24 KOG0315 G-protein beta subunit 100.0 3E-36 6.5E-41 274.9 30.9 288 368-689 9-304 (311)
25 KOG1063 RNA polymerase II elon 100.0 1.3E-34 2.7E-39 301.2 42.9 542 337-953 36-644 (764)
26 KOG0273 Beta-transducin family 100.0 7.6E-36 1.6E-40 296.7 32.4 317 319-672 175-523 (524)
27 KOG0296 Angio-associated migra 100.0 3.1E-35 6.6E-40 283.5 34.3 335 458-953 59-394 (399)
28 KOG0292 Vesicle coat complex C 100.0 1.9E-34 4E-39 306.7 42.1 490 355-946 8-547 (1202)
29 KOG0279 G protein beta subunit 100.0 2.9E-35 6.4E-40 273.5 31.3 252 413-679 10-268 (315)
30 KOG0295 WD40 repeat-containing 100.0 7.3E-36 1.6E-40 287.5 26.4 292 347-671 99-405 (406)
31 KOG0296 Angio-associated migra 100.0 1.4E-34 3.1E-39 278.9 33.6 329 414-915 60-398 (399)
32 KOG1539 WD repeat protein [Gen 100.0 2.8E-33 6E-38 297.2 44.3 530 323-949 77-639 (910)
33 KOG0285 Pleiotropic regulator 100.0 3.7E-35 8.1E-40 281.2 26.4 293 347-673 141-440 (460)
34 KOG0645 WD40 repeat protein [G 100.0 1.5E-33 3.3E-38 260.9 33.5 291 350-672 7-311 (312)
35 KOG2106 Uncharacterized conser 100.0 3.4E-32 7.4E-37 272.5 44.6 475 321-952 103-621 (626)
36 KOG1539 WD repeat protein [Gen 100.0 1.7E-32 3.6E-37 291.3 44.5 484 414-953 110-602 (910)
37 KOG1063 RNA polymerase II elon 100.0 8.1E-33 1.8E-37 287.8 39.1 575 320-953 52-759 (764)
38 KOG0265 U5 snRNP-specific prot 100.0 7.2E-34 1.6E-38 267.0 28.1 287 351-669 42-335 (338)
39 KOG0284 Polyadenylation factor 100.0 2E-35 4.4E-40 288.3 17.3 284 355-672 95-380 (464)
40 KOG0265 U5 snRNP-specific prot 100.0 2.7E-33 6E-38 263.1 29.7 251 413-674 42-298 (338)
41 KOG0285 Pleiotropic regulator 100.0 9.8E-34 2.1E-38 271.5 25.6 246 413-674 146-391 (460)
42 KOG0295 WD40 repeat-containing 100.0 4.7E-34 1E-38 275.0 23.0 302 498-953 99-402 (406)
43 KOG0276 Vesicle coat complex C 100.0 8.4E-32 1.8E-36 276.4 39.6 457 324-914 15-489 (794)
44 KOG0266 WD40 repeat-containing 100.0 9.4E-33 2E-37 305.9 32.9 286 355-672 158-454 (456)
45 KOG0316 Conserved WD40 repeat- 100.0 1.4E-32 3E-37 248.8 25.3 290 345-671 5-298 (307)
46 KOG0284 Polyadenylation factor 100.0 7.7E-34 1.7E-38 277.4 18.1 284 417-806 95-380 (464)
47 KOG0282 mRNA splicing factor [ 100.0 1.3E-33 2.8E-38 282.3 17.2 294 345-670 202-503 (503)
48 KOG0292 Vesicle coat complex C 100.0 4.6E-31 1E-35 281.0 37.5 265 414-691 5-298 (1202)
49 KOG0263 Transcription initiati 100.0 6E-33 1.3E-37 294.9 23.1 247 417-674 377-651 (707)
50 KOG0293 WD40 repeat-containing 100.0 2.7E-32 5.9E-37 266.5 23.6 294 413-758 219-514 (519)
51 cd00200 WD40 WD40 domain, foun 100.0 9.2E-31 2E-35 278.1 37.6 283 354-670 7-289 (289)
52 KOG0281 Beta-TrCP (transducin 100.0 2.6E-33 5.6E-38 267.3 15.4 274 355-674 196-479 (499)
53 KOG0645 WD40 repeat protein [G 100.0 1.7E-30 3.8E-35 240.8 31.1 242 414-672 10-261 (312)
54 KOG2048 WD40 repeat protein [G 100.0 7.7E-29 1.7E-33 258.2 45.2 493 417-951 24-542 (691)
55 KOG0281 Beta-TrCP (transducin 100.0 3.2E-32 7E-37 259.8 16.7 232 417-674 196-430 (499)
56 KOG2106 Uncharacterized conser 100.0 1.7E-28 3.7E-33 246.1 43.4 429 361-951 70-515 (626)
57 KOG0266 WD40 repeat-containing 100.0 2E-30 4.4E-35 287.3 33.0 258 416-683 157-419 (456)
58 cd00200 WD40 WD40 domain, foun 100.0 2.2E-29 4.8E-34 267.4 37.8 247 414-674 5-251 (289)
59 KOG0278 Serine/threonine kinas 100.0 2.5E-31 5.5E-36 242.7 19.0 289 349-674 7-299 (334)
60 KOG0316 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 234.6 25.0 247 412-674 11-259 (307)
61 KOG0282 mRNA splicing factor [ 100.0 6.4E-32 1.4E-36 270.2 16.3 290 413-755 209-503 (503)
62 PLN00181 protein SPA1-RELATED; 100.0 2.8E-29 6E-34 300.8 40.7 292 354-671 481-792 (793)
63 KOG2048 WD40 repeat protein [G 100.0 2.6E-27 5.6E-32 246.9 49.5 519 319-940 22-584 (691)
64 PLN00181 protein SPA1-RELATED; 100.0 7.3E-29 1.6E-33 297.2 42.1 271 378-674 457-740 (793)
65 KOG0288 WD40 repeat protein Ti 100.0 2E-30 4.4E-35 254.0 17.5 292 345-669 163-458 (459)
66 KOG0640 mRNA cleavage stimulat 100.0 6.3E-29 1.4E-33 234.0 26.6 307 353-671 109-425 (430)
67 KOG0310 Conserved WD40 repeat- 100.0 4.4E-29 9.5E-34 250.6 27.2 284 354-671 24-308 (487)
68 KOG0313 Microtubule binding pr 100.0 6.6E-29 1.4E-33 241.0 27.1 290 345-671 94-417 (423)
69 KOG0641 WD40 repeat protein [G 100.0 7.9E-28 1.7E-32 216.3 32.1 312 347-672 23-349 (350)
70 KOG0643 Translation initiation 100.0 4.8E-29 1E-33 230.5 24.1 289 350-674 4-319 (327)
71 KOG0973 Histone transcription 100.0 1.2E-28 2.7E-33 271.6 29.2 306 355-674 12-357 (942)
72 KOG0278 Serine/threonine kinas 100.0 1.1E-29 2.3E-34 232.2 16.5 283 544-953 7-293 (334)
73 KOG0643 Translation initiation 100.0 7.2E-28 1.6E-32 222.7 28.6 300 413-806 5-317 (327)
74 KOG0275 Conserved WD40 repeat- 100.0 2.8E-29 6.1E-34 237.5 18.7 289 415-755 210-507 (508)
75 KOG1445 Tumor-specific antigen 100.0 8.9E-28 1.9E-32 246.7 29.8 217 349-587 71-295 (1012)
76 KOG1407 WD40 repeat protein [F 100.0 1.8E-27 3.9E-32 219.5 28.3 276 353-663 17-293 (313)
77 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-26 4.2E-31 220.0 34.1 283 355-673 13-304 (311)
78 PTZ00421 coronin; Provisional 100.0 1E-26 2.3E-31 255.5 37.2 289 355-654 19-315 (493)
79 KOG0313 Microtubule binding pr 100.0 8E-28 1.7E-32 233.5 24.6 303 549-954 103-415 (423)
80 KOG1407 WD40 repeat protein [F 100.0 2.2E-27 4.7E-32 218.9 25.9 249 413-674 15-263 (313)
81 KOG0277 Peroxisomal targeting 100.0 8.1E-28 1.7E-32 220.8 22.1 284 360-671 12-308 (311)
82 KOG0283 WD40 repeat-containing 100.0 7.1E-28 1.5E-32 259.0 24.9 249 416-674 265-578 (712)
83 KOG0647 mRNA export protein (c 100.0 5.3E-27 1.2E-31 221.1 26.5 274 355-661 26-312 (347)
84 KOG0640 mRNA cleavage stimulat 100.0 1.2E-27 2.7E-32 225.4 22.0 293 413-804 107-424 (430)
85 KOG0274 Cdc4 and related F-box 100.0 6.1E-27 1.3E-31 257.0 30.1 284 354-681 206-490 (537)
86 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-25 3.8E-30 213.5 34.4 248 414-674 10-264 (311)
87 KOG0288 WD40 repeat protein Ti 100.0 8.1E-28 1.7E-32 235.9 18.4 253 414-681 171-425 (459)
88 KOG0277 Peroxisomal targeting 100.0 4.3E-27 9.3E-32 216.1 21.3 252 348-627 52-308 (311)
89 KOG0305 Anaphase promoting com 100.0 2.1E-26 4.5E-31 242.0 28.5 278 360-674 181-463 (484)
90 KOG0308 Conserved WD40 repeat- 100.0 5.5E-27 1.2E-31 242.8 21.5 248 417-674 20-287 (735)
91 KOG0299 U3 snoRNP-associated p 100.0 5E-26 1.1E-30 226.8 26.6 297 352-670 138-454 (479)
92 PTZ00420 coronin; Provisional 100.0 4.5E-25 9.7E-30 243.0 36.8 256 375-654 50-318 (568)
93 PTZ00421 coronin; Provisional 99.9 3E-25 6.5E-30 244.0 34.3 255 417-680 19-297 (493)
94 KOG0772 Uncharacterized conser 99.9 3E-26 6.4E-31 230.7 23.7 296 545-953 161-483 (641)
95 KOG0305 Anaphase promoting com 99.9 7.4E-26 1.6E-30 237.9 27.8 244 356-630 217-463 (484)
96 KOG0283 WD40 repeat-containing 99.9 2.3E-26 5E-31 247.5 24.1 263 354-630 265-578 (712)
97 KOG0289 mRNA splicing factor [ 99.9 2E-25 4.3E-30 220.4 27.7 284 357-671 220-505 (506)
98 KOG0772 Uncharacterized conser 99.9 5.2E-26 1.1E-30 229.0 23.9 300 347-670 157-485 (641)
99 KOG0300 WD40 repeat-containing 99.9 3.8E-26 8.3E-31 215.8 21.0 296 347-674 138-478 (481)
100 KOG0294 WD40 repeat-containing 99.9 2.9E-25 6.3E-30 210.6 26.8 244 413-674 38-283 (362)
101 KOG0268 Sof1-like rRNA process 99.9 7.5E-27 1.6E-31 225.2 15.3 283 354-674 64-347 (433)
102 KOG0299 U3 snoRNP-associated p 99.9 2.3E-25 5.1E-30 222.1 26.3 252 414-676 138-414 (479)
103 KOG0274 Cdc4 and related F-box 99.9 3.9E-25 8.4E-30 242.9 29.8 245 416-683 206-451 (537)
104 KOG0268 Sof1-like rRNA process 99.9 1.2E-26 2.7E-31 223.7 15.8 287 458-876 61-349 (433)
105 KOG0310 Conserved WD40 repeat- 99.9 1.3E-25 2.7E-30 225.8 23.0 276 551-953 26-305 (487)
106 KOG0647 mRNA export protein (c 99.9 6.3E-25 1.4E-29 207.2 26.2 249 415-674 24-283 (347)
107 KOG2096 WD40 repeat protein [G 99.9 6.4E-25 1.4E-29 208.1 25.2 308 412-870 80-400 (420)
108 KOG0301 Phospholipase A2-activ 99.9 5.8E-25 1.3E-29 229.8 27.0 282 348-673 5-289 (745)
109 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.8E-29 214.7 26.7 240 418-670 219-460 (506)
110 KOG0973 Histone transcription 99.9 9.1E-25 2E-29 241.2 28.2 294 414-808 9-357 (942)
111 KOG2096 WD40 repeat protein [G 99.9 2.4E-24 5.1E-29 204.3 26.4 305 501-913 80-400 (420)
112 KOG0308 Conserved WD40 repeat- 99.9 5.1E-25 1.1E-29 228.4 23.6 288 361-673 29-328 (735)
113 KOG1036 Mitotic spindle checkp 99.9 3.7E-24 8E-29 203.1 27.3 271 355-662 12-294 (323)
114 PTZ00420 coronin; Provisional 99.9 9.4E-24 2E-28 232.6 34.2 228 436-674 50-295 (568)
115 KOG0639 Transducin-like enhanc 99.9 6.7E-25 1.4E-29 220.0 20.2 293 348-671 411-703 (705)
116 KOG0300 WD40 repeat-containing 99.9 9E-24 2E-28 199.9 24.9 245 414-674 144-430 (481)
117 KOG0641 WD40 repeat protein [G 99.9 9.9E-23 2.1E-27 183.6 29.9 278 323-628 33-349 (350)
118 KOG1332 Vesicle coat complex C 99.9 1.6E-24 3.5E-29 198.1 17.8 253 414-673 7-287 (299)
119 KOG0301 Phospholipase A2-activ 99.9 1.2E-23 2.7E-28 220.0 25.0 278 588-953 5-284 (745)
120 KOG1273 WD40 repeat protein [G 99.9 2.7E-23 5.9E-28 196.9 24.0 295 345-674 13-324 (405)
121 KOG0294 WD40 repeat-containing 99.9 3.9E-23 8.5E-28 196.3 25.1 270 433-758 4-282 (362)
122 KOG0264 Nucleosome remodeling 99.9 1.2E-23 2.6E-28 210.4 22.8 265 348-628 116-404 (422)
123 KOG4283 Transcription-coupled 99.9 5.5E-23 1.2E-27 192.9 25.7 302 354-671 41-364 (397)
124 KOG1036 Mitotic spindle checkp 99.9 1.2E-22 2.7E-27 192.9 27.9 241 417-674 12-264 (323)
125 KOG2055 WD40 repeat protein [G 99.9 2.8E-23 6.2E-28 207.0 24.4 290 506-915 212-512 (514)
126 KOG0264 Nucleosome remodeling 99.9 5.7E-23 1.2E-27 205.6 26.7 253 414-673 120-405 (422)
127 KOG2055 WD40 repeat protein [G 99.9 3.3E-23 7E-28 206.6 24.4 288 356-672 213-512 (514)
128 KOG0646 WD40 repeat protein [G 99.9 8.1E-24 1.8E-28 211.7 20.2 290 531-937 18-329 (476)
129 KOG0646 WD40 repeat protein [G 99.9 4.1E-23 8.9E-28 206.7 24.0 225 417-653 80-330 (476)
130 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-21 8.1E-26 205.8 38.8 293 522-937 2-300 (300)
131 KOG4328 WD40 protein [Function 99.9 9.9E-23 2.1E-27 203.1 23.9 294 355-672 185-495 (498)
132 KOG1332 Vesicle coat complex C 99.9 2.6E-23 5.6E-28 190.2 18.2 252 355-629 10-287 (299)
133 KOG1273 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 190.2 22.6 253 421-685 26-292 (405)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.9E-21 1.7E-25 203.3 36.9 277 371-683 3-289 (300)
135 KOG1445 Tumor-specific antigen 99.9 6.8E-22 1.5E-26 203.8 26.4 183 746-950 600-787 (1012)
136 KOG1963 WD40 repeat protein [G 99.9 7.1E-21 1.5E-25 205.9 35.4 484 361-921 21-589 (792)
137 KOG0639 Transducin-like enhanc 99.9 2.3E-22 4.9E-27 202.0 21.0 277 549-951 417-698 (705)
138 KOG0267 Microtubule severing p 99.9 6.1E-24 1.3E-28 223.0 10.1 236 414-663 24-259 (825)
139 KOG1963 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 204.2 35.3 462 423-953 21-534 (792)
140 KOG1274 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 209.5 30.0 279 353-669 10-297 (933)
141 KOG1538 Uncharacterized conser 99.9 7.8E-21 1.7E-25 197.1 31.0 273 358-673 14-294 (1081)
142 KOG2445 Nuclear pore complex c 99.9 4.3E-21 9.3E-26 181.9 25.9 258 598-953 13-314 (361)
143 KOG0650 WD40 repeat nucleolar 99.9 1.6E-21 3.5E-26 200.4 23.2 246 410-670 392-678 (733)
144 KOG1274 WD40 repeat protein [G 99.9 7.3E-21 1.6E-25 205.9 29.0 246 415-673 10-263 (933)
145 KOG0270 WD40 repeat-containing 99.9 3.5E-21 7.6E-26 191.7 23.9 243 429-677 191-454 (463)
146 KOG0321 WD40 repeat-containing 99.9 2E-21 4.4E-26 201.5 22.4 290 362-674 55-393 (720)
147 KOG0269 WD40 repeat-containing 99.9 8.5E-22 1.8E-26 208.8 20.0 298 355-674 38-342 (839)
148 KOG0321 WD40 repeat-containing 99.9 1.8E-21 3.8E-26 201.9 21.5 289 423-758 54-392 (720)
149 KOG4283 Transcription-coupled 99.9 2E-20 4.4E-25 175.9 25.9 215 414-633 39-281 (397)
150 KOG0269 WD40 repeat-containing 99.9 3.8E-22 8.2E-27 211.4 15.4 249 358-631 89-343 (839)
151 KOG0650 WD40 repeat nucleolar 99.9 2E-20 4.3E-25 192.5 24.9 292 346-669 389-732 (733)
152 KOG1009 Chromatin assembly com 99.9 6.1E-20 1.3E-24 180.8 25.1 302 355-674 12-374 (434)
153 KOG0307 Vesicle coat complex C 99.9 2.1E-21 4.5E-26 215.7 14.8 253 417-674 63-329 (1049)
154 KOG2445 Nuclear pore complex c 99.9 1.8E-19 3.9E-24 171.0 25.3 255 414-672 9-318 (361)
155 KOG0267 Microtubule severing p 99.9 7.9E-22 1.7E-26 207.3 10.1 233 355-619 27-259 (825)
156 KOG1034 Transcriptional repres 99.9 9.9E-20 2.1E-24 174.2 22.5 290 355-672 37-383 (385)
157 COG2319 FOG: WD40 repeat [Gene 99.9 5.2E-17 1.1E-21 184.2 49.0 391 414-948 61-463 (466)
158 KOG4328 WD40 protein [Function 99.8 1.9E-19 4.2E-24 179.9 23.8 209 458-672 181-399 (498)
159 COG2319 FOG: WD40 repeat [Gene 99.8 4.6E-17 1E-21 184.6 47.1 369 458-953 60-438 (466)
160 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-19 2.4E-24 182.6 21.8 289 378-695 11-303 (673)
161 KOG0302 Ribosome Assembly prot 99.8 1.4E-19 3E-24 176.3 21.3 272 345-669 140-435 (440)
162 KOG4497 Uncharacterized conser 99.8 2.3E-19 5E-24 171.4 22.3 408 423-949 13-424 (447)
163 KOG4378 Nuclear protein COP1 [ 99.8 2.3E-19 5E-24 180.4 22.7 291 524-939 5-305 (673)
164 KOG0302 Ribosome Assembly prot 99.8 1.3E-19 2.9E-24 176.4 19.8 175 346-540 200-379 (440)
165 KOG1034 Transcriptional repres 99.8 4.2E-19 9.1E-24 170.0 21.6 251 413-674 33-339 (385)
166 KOG2919 Guanine nucleotide-bin 99.8 4.1E-19 8.9E-24 169.5 21.4 288 359-663 52-361 (406)
167 KOG0303 Actin-binding protein 99.8 1.5E-18 3.2E-23 170.2 24.0 237 411-654 74-321 (472)
168 KOG2919 Guanine nucleotide-bin 99.8 2.5E-18 5.4E-23 164.2 21.6 280 553-948 51-361 (406)
169 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 173.9 19.3 262 357-633 174-454 (463)
170 KOG1538 Uncharacterized conser 99.8 2.3E-18 5E-23 179.0 21.4 270 552-952 13-288 (1081)
171 KOG0303 Actin-binding protein 99.8 6.2E-18 1.3E-22 165.8 23.2 246 429-681 43-303 (472)
172 KOG0307 Vesicle coat complex C 99.8 4.3E-19 9.3E-24 197.6 16.8 262 349-631 57-330 (1049)
173 KOG1009 Chromatin assembly com 99.8 6.4E-18 1.4E-22 166.7 22.9 317 507-920 13-377 (434)
174 KOG1334 WD40 repeat protein [G 99.8 3.5E-19 7.7E-24 179.3 14.0 299 349-674 134-468 (559)
175 KOG1188 WD40 repeat protein [G 99.8 2.5E-18 5.4E-23 165.8 17.2 293 479-805 42-345 (376)
176 KOG0649 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 146.6 25.4 281 358-669 12-313 (325)
177 KOG1188 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 160.9 19.5 275 370-672 41-346 (376)
178 KOG4227 WD40 repeat protein [G 99.8 2.7E-17 5.9E-22 160.6 21.5 296 353-672 53-387 (609)
179 KOG0642 Cell-cycle nuclear pro 99.8 4.7E-18 1E-22 174.7 15.1 250 414-674 290-563 (577)
180 KOG1310 WD40 repeat protein [G 99.8 6.7E-17 1.5E-21 164.9 23.2 242 413-683 45-314 (758)
181 KOG1912 WD40 repeat protein [G 99.8 8.5E-16 1.8E-20 163.2 31.3 462 357-876 16-555 (1062)
182 KOG4497 Uncharacterized conser 99.8 1.5E-16 3.2E-21 152.5 23.1 403 361-907 13-424 (447)
183 KOG0644 Uncharacterized conser 99.8 3.1E-18 6.8E-23 182.8 12.5 281 351-674 185-470 (1113)
184 KOG1007 WD repeat protein TSSC 99.8 1.2E-16 2.7E-21 150.3 21.1 306 323-672 40-361 (370)
185 PRK11028 6-phosphogluconolacto 99.8 2.1E-15 4.6E-20 162.5 34.0 285 524-915 5-304 (330)
186 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-17 3.2E-22 171.1 15.6 266 353-639 291-572 (577)
187 KOG0322 G-protein beta subunit 99.8 3.2E-17 7E-22 152.4 16.2 300 499-914 6-322 (323)
188 KOG0290 Conserved WD40 repeat- 99.7 4.9E-16 1.1E-20 146.5 23.9 292 347-668 35-361 (364)
189 KOG2110 Uncharacterized conser 99.7 8.9E-15 1.9E-19 143.2 33.2 241 417-674 4-250 (391)
190 KOG1524 WD40 repeat-containing 99.7 9.5E-16 2.1E-20 156.2 27.1 185 414-626 100-284 (737)
191 KOG0322 G-protein beta subunit 99.7 6.5E-17 1.4E-21 150.4 16.8 246 413-671 9-322 (323)
192 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.5E-19 156.7 36.5 273 371-672 4-304 (330)
193 KOG1587 Cytoplasmic dynein int 99.7 2.2E-15 4.7E-20 164.5 27.3 250 417-674 241-518 (555)
194 KOG0644 Uncharacterized conser 99.7 1.6E-17 3.5E-22 177.5 9.8 280 590-954 183-465 (1113)
195 KOG1587 Cytoplasmic dynein int 99.7 2E-15 4.3E-20 164.8 25.8 263 347-629 233-517 (555)
196 KOG1524 WD40 repeat-containing 99.7 2E-15 4.4E-20 153.8 23.9 341 416-886 12-362 (737)
197 KOG4227 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 147.0 23.6 255 412-674 50-324 (609)
198 KOG1007 WD repeat protein TSSC 99.7 8.2E-16 1.8E-20 144.8 19.1 237 313-569 61-348 (370)
199 KOG1310 WD40 repeat protein [G 99.7 6.6E-16 1.4E-20 157.7 18.7 165 354-539 48-231 (758)
200 PRK01742 tolB translocation pr 99.7 2.5E-15 5.4E-20 166.8 24.9 236 378-653 183-426 (429)
201 KOG1523 Actin-related protein 99.7 4.3E-15 9.3E-20 142.5 22.4 227 356-608 10-259 (361)
202 KOG1240 Protein kinase contain 99.7 9E-15 2E-19 163.6 28.0 255 414-674 1044-1336(1431)
203 KOG0290 Conserved WD40 repeat- 99.7 5.2E-15 1.1E-19 139.7 21.3 251 353-624 93-361 (364)
204 PRK01742 tolB translocation pr 99.7 9.2E-15 2E-19 162.2 27.2 235 576-938 183-426 (429)
205 KOG0771 Prolactin regulatory e 99.7 6.3E-15 1.4E-19 147.2 22.9 154 775-953 185-350 (398)
206 KOG1912 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 152.8 28.0 554 328-953 21-737 (1062)
207 KOG1832 HIV-1 Vpr-binding prot 99.7 1.1E-16 2.3E-21 172.0 9.3 299 170-616 1014-1319(1516)
208 KOG1517 Guanine nucleotide bin 99.7 2E-14 4.4E-19 158.1 26.0 291 358-674 1066-1383(1387)
209 PF02239 Cytochrom_D1: Cytochr 99.7 7.9E-13 1.7E-17 141.3 37.1 334 477-924 6-356 (369)
210 KOG1517 Guanine nucleotide bin 99.7 1.8E-14 4E-19 158.5 24.8 255 415-674 1061-1335(1387)
211 KOG1523 Actin-related protein 99.6 3E-14 6.6E-19 136.7 21.0 230 417-657 9-264 (361)
212 KOG0771 Prolactin regulatory e 99.6 2.4E-14 5.2E-19 143.1 20.9 197 422-628 148-354 (398)
213 KOG0649 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 127.1 22.6 235 419-672 11-274 (325)
214 KOG1240 Protein kinase contain 99.6 6.7E-14 1.5E-18 156.7 25.0 208 458-674 1043-1275(1431)
215 KOG2139 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 132.2 26.0 287 357-672 99-431 (445)
216 KOG2110 Uncharacterized conser 99.6 2E-12 4.3E-17 127.1 31.5 280 328-639 11-343 (391)
217 PF02239 Cytochrom_D1: Cytochr 99.6 9.8E-13 2.1E-17 140.6 32.5 272 371-674 8-304 (369)
218 KOG2111 Uncharacterized conser 99.6 3.2E-12 6.8E-17 123.1 31.1 238 420-674 7-258 (346)
219 KOG1334 WD40 repeat protein [G 99.6 8.5E-15 1.8E-19 148.1 14.2 295 414-758 138-467 (559)
220 PRK03629 tolB translocation pr 99.6 6.1E-13 1.3E-17 147.2 29.7 237 380-652 180-427 (429)
221 PF04762 IKI3: IKI3 family; I 99.6 8.7E-10 1.9E-14 130.9 57.3 421 417-916 74-565 (928)
222 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 3.8E-18 141.3 22.5 288 348-672 43-343 (703)
223 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 127.3 26.9 296 508-915 99-431 (445)
224 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.4E-19 146.3 11.6 280 358-676 131-413 (545)
225 PRK05137 tolB translocation pr 99.6 1.8E-12 3.8E-17 144.7 29.9 237 379-652 182-432 (435)
226 PRK04922 tolB translocation pr 99.6 1E-12 2.2E-17 146.3 27.8 238 379-652 184-432 (433)
227 KOG2111 Uncharacterized conser 99.6 5E-12 1.1E-16 121.8 27.8 239 553-916 7-257 (346)
228 KOG2041 WD40 repeat protein [G 99.5 4E-11 8.7E-16 126.9 35.6 519 324-941 16-603 (1189)
229 PRK02889 tolB translocation pr 99.5 1.6E-12 3.5E-17 144.1 26.4 224 415-653 192-425 (427)
230 COG5354 Uncharacterized protei 99.5 7.7E-12 1.7E-16 127.9 28.7 283 355-674 31-350 (561)
231 PRK03629 tolB translocation pr 99.5 4.9E-12 1.1E-16 140.0 28.8 237 337-608 181-427 (429)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 9.6E-13 2.1E-17 135.0 20.9 254 357-652 124-384 (636)
233 KOG2315 Predicted translation 99.5 3E-11 6.4E-16 125.4 32.0 282 356-674 34-346 (566)
234 PF10282 Lactonase: Lactonase, 99.5 1.4E-10 3.1E-15 124.7 38.2 308 524-935 2-345 (345)
235 KOG3881 Uncharacterized conser 99.5 2.8E-12 6.2E-17 126.8 22.4 272 356-652 55-341 (412)
236 KOG1272 WD40-repeat-containing 99.5 5.8E-14 1.3E-18 141.2 9.8 231 419-670 130-360 (545)
237 KOG2314 Translation initiation 99.5 8.6E-12 1.9E-16 128.5 25.4 315 326-672 214-573 (698)
238 PRK04922 tolB translocation pr 99.5 5.7E-12 1.2E-16 140.4 25.7 224 352-608 199-432 (433)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 6.5E-13 1.4E-17 136.2 16.3 154 356-516 219-383 (636)
240 PRK02889 tolB translocation pr 99.5 8.3E-12 1.8E-16 138.5 26.1 225 352-609 191-425 (427)
241 COG2706 3-carboxymuconate cycl 99.5 5.7E-10 1.2E-14 110.6 35.3 302 530-936 15-345 (346)
242 KOG2315 Predicted translation 99.5 4.5E-11 9.8E-16 124.1 28.8 328 551-954 34-381 (566)
243 COG5354 Uncharacterized protei 99.5 9.8E-11 2.1E-15 120.0 29.9 316 324-664 34-421 (561)
244 KOG0974 WD-repeat protein WDR6 99.4 1.7E-10 3.6E-15 128.7 32.4 194 358-586 89-289 (967)
245 KOG2041 WD40 repeat protein [G 99.4 5.6E-10 1.2E-14 118.5 34.0 485 355-943 13-559 (1189)
246 PRK05137 tolB translocation pr 99.4 5.9E-11 1.3E-15 132.5 28.6 223 353-608 198-432 (435)
247 KOG2321 WD40 repeat protein [G 99.4 3.9E-11 8.4E-16 124.4 24.4 285 461-807 49-344 (703)
248 PF10282 Lactonase: Lactonase, 99.4 4.3E-09 9.3E-14 113.3 40.3 247 418-672 36-322 (345)
249 KOG3881 Uncharacterized conser 99.4 2.5E-11 5.5E-16 120.2 20.4 245 417-674 54-322 (412)
250 KOG1354 Serine/threonine prote 99.4 4.1E-11 8.9E-16 116.4 21.4 250 418-686 25-315 (433)
251 KOG0974 WD-repeat protein WDR6 99.4 5.9E-10 1.3E-14 124.4 33.2 200 464-674 88-290 (967)
252 PRK04792 tolB translocation pr 99.4 2.1E-10 4.5E-15 127.6 28.9 222 415-652 214-446 (448)
253 COG4946 Uncharacterized protei 99.4 2.5E-09 5.4E-14 108.6 33.2 441 417-944 35-505 (668)
254 KOG1354 Serine/threonine prote 99.4 1.4E-10 3E-15 112.8 23.4 264 354-630 23-361 (433)
255 PRK00178 tolB translocation pr 99.4 3.4E-10 7.5E-15 126.7 30.6 222 415-652 195-427 (430)
256 PRK01029 tolB translocation pr 99.4 4.5E-10 9.9E-15 123.7 30.1 243 379-654 165-426 (428)
257 TIGR02800 propeller_TolB tol-p 99.4 3.6E-10 7.8E-15 126.7 29.1 221 414-650 185-416 (417)
258 PF08662 eIF2A: Eukaryotic tra 99.3 1.4E-10 3E-15 112.3 21.3 164 421-593 8-186 (194)
259 PRK00178 tolB translocation pr 99.3 3.3E-10 7.1E-15 126.9 27.4 226 350-608 192-427 (430)
260 PF08662 eIF2A: Eukaryotic tra 99.3 1.5E-10 3.3E-15 112.1 21.1 163 467-637 9-187 (194)
261 PRK04792 tolB translocation pr 99.3 3.2E-10 6.9E-15 126.1 26.6 223 353-608 214-446 (448)
262 KOG2314 Translation initiation 99.3 5.7E-10 1.2E-14 115.4 25.7 310 553-952 212-562 (698)
263 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.4E-08 3.1E-13 105.7 35.7 281 577-924 27-339 (352)
264 COG4946 Uncharacterized protei 99.3 7.9E-09 1.7E-13 105.0 31.8 230 364-617 274-507 (668)
265 PRK01029 tolB translocation pr 99.3 6E-10 1.3E-14 122.8 26.4 227 355-610 183-426 (428)
266 COG2706 3-carboxymuconate cycl 99.3 4.8E-08 1E-12 97.2 35.5 279 348-651 31-345 (346)
267 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.3E-13 105.5 33.8 265 379-681 27-338 (352)
268 TIGR02800 propeller_TolB tol-p 99.3 1.3E-09 2.8E-14 122.2 28.0 213 351-595 184-406 (417)
269 KOG1409 Uncharacterized conser 99.3 6.3E-10 1.4E-14 108.5 21.1 248 413-674 19-272 (404)
270 KOG4547 WD40 repeat-containing 99.3 7.6E-10 1.7E-14 116.2 23.0 194 427-629 2-221 (541)
271 KOG0280 Uncharacterized conser 99.3 4.4E-10 9.6E-15 107.3 19.2 253 355-629 68-334 (339)
272 PF04762 IKI3: IKI3 family; I 99.3 2.3E-07 5E-12 110.6 45.9 247 419-674 22-335 (928)
273 KOG2659 LisH motif-containing 99.3 7.4E-11 1.6E-15 110.6 12.9 168 3-182 24-204 (228)
274 TIGR03300 assembly_YfgL outer 99.2 8.5E-09 1.8E-13 113.5 29.8 302 522-952 66-374 (377)
275 KOG1409 Uncharacterized conser 99.2 1.7E-09 3.7E-14 105.5 20.1 244 355-628 23-270 (404)
276 KOG4547 WD40 repeat-containing 99.2 5.1E-09 1.1E-13 110.1 23.8 190 370-585 6-220 (541)
277 TIGR03300 assembly_YfgL outer 99.2 5.5E-08 1.2E-12 107.1 33.1 183 479-674 67-261 (377)
278 KOG0309 Conserved WD40 repeat- 99.1 2.2E-09 4.7E-14 114.7 14.2 280 326-629 28-340 (1081)
279 PRK04043 tolB translocation pr 99.0 1.1E-07 2.3E-12 104.2 27.6 216 336-587 170-402 (419)
280 KOG0280 Uncharacterized conser 99.0 3E-08 6.4E-13 95.0 19.9 271 379-674 46-335 (339)
281 KOG1064 RAVE (regulator of V-A 99.0 1.5E-09 3.2E-14 126.9 11.7 200 415-638 2205-2408(2439)
282 KOG0309 Conserved WD40 repeat- 99.0 6.9E-09 1.5E-13 111.0 14.1 298 417-758 23-340 (1081)
283 PLN02919 haloacid dehalogenase 99.0 7.9E-07 1.7E-11 108.4 33.1 245 422-674 571-890 (1057)
284 PLN02919 haloacid dehalogenase 98.9 1.1E-06 2.4E-11 107.1 33.8 259 360-632 571-892 (1057)
285 KOG4532 WD40-like repeat conta 98.9 1.9E-07 4.1E-12 88.4 19.9 226 653-949 83-324 (344)
286 PRK04043 tolB translocation pr 98.9 1.5E-06 3.3E-11 95.2 30.6 197 420-630 189-402 (419)
287 KOG4190 Uncharacterized conser 98.9 6E-09 1.3E-13 107.5 9.7 240 414-670 731-986 (1034)
288 KOG1064 RAVE (regulator of V-A 98.9 8.2E-09 1.8E-13 120.9 11.3 224 431-683 2181-2408(2439)
289 PF07433 DUF1513: Protein of u 98.9 2.4E-06 5.3E-11 85.7 26.5 253 359-662 7-276 (305)
290 KOG4190 Uncharacterized conser 98.8 2.7E-08 5.9E-13 102.7 12.4 288 354-668 733-1032(1034)
291 KOG1832 HIV-1 Vpr-binding prot 98.8 2.2E-09 4.8E-14 116.8 4.5 216 414-659 1097-1318(1516)
292 KOG4532 WD40-like repeat conta 98.8 5.6E-07 1.2E-11 85.2 19.7 148 421-570 161-321 (344)
293 PRK11138 outer membrane biogen 98.8 2.4E-06 5.2E-11 94.4 28.1 304 522-952 70-389 (394)
294 PF15492 Nbas_N: Neuroblastoma 98.8 6.3E-06 1.4E-10 80.0 26.7 247 361-639 2-270 (282)
295 PRK11138 outer membrane biogen 98.8 8.5E-06 1.8E-10 90.0 32.2 189 479-675 71-277 (394)
296 PF07433 DUF1513: Protein of u 98.8 5.6E-06 1.2E-10 83.1 26.9 257 555-904 8-275 (305)
297 PF15492 Nbas_N: Neuroblastoma 98.8 9.1E-06 2E-10 78.9 26.3 232 423-674 2-261 (282)
298 KOG3914 WD repeat protein WDR4 98.8 1.6E-07 3.4E-12 94.5 14.3 86 414-504 147-232 (390)
299 COG5170 CDC55 Serine/threonine 98.7 2.3E-07 4.9E-12 89.5 14.4 249 417-672 25-367 (460)
300 PF08450 SGL: SMP-30/Gluconola 98.7 1.5E-05 3.3E-10 81.7 29.0 218 423-660 4-243 (246)
301 KOG3914 WD repeat protein WDR4 98.7 1.4E-07 3.1E-12 94.8 12.4 164 358-547 64-231 (390)
302 KOG0882 Cyclophilin-related pe 98.7 3.9E-07 8.4E-12 92.6 15.0 268 600-924 11-314 (558)
303 KOG4714 Nucleoporin [Nuclear s 98.7 2.9E-07 6.3E-12 86.8 13.0 209 359-586 39-255 (319)
304 KOG4649 PQQ (pyrrolo-quinoline 98.7 4.8E-05 1E-09 72.2 27.2 146 364-537 18-163 (354)
305 PF08450 SGL: SMP-30/Gluconola 98.7 5E-05 1.1E-09 77.8 30.7 221 361-617 4-244 (246)
306 PF13360 PQQ_2: PQQ-like domai 98.7 1.5E-05 3.2E-10 81.6 26.6 222 378-635 2-237 (238)
307 PRK02888 nitrous-oxide reducta 98.6 7.2E-06 1.6E-10 90.0 23.9 102 843-946 320-450 (635)
308 PF13360 PQQ_2: PQQ-like domai 98.6 2.8E-05 6.2E-10 79.5 27.1 222 439-678 2-236 (238)
309 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.6E-12 92.9 8.6 166 361-550 216-387 (425)
310 KOG0396 Uncharacterized conser 98.6 6.4E-07 1.4E-11 89.2 13.6 173 5-189 115-298 (389)
311 PF00930 DPPIV_N: Dipeptidyl p 98.6 6E-05 1.3E-09 81.6 28.8 299 560-945 1-345 (353)
312 KOG1645 RING-finger-containing 98.6 2E-05 4.3E-10 79.5 22.4 249 413-672 188-461 (463)
313 COG5170 CDC55 Serine/threonine 98.6 4.4E-07 9.5E-12 87.5 10.4 107 840-946 169-299 (460)
314 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00015 3.3E-09 78.5 31.0 256 365-659 1-297 (353)
315 KOG0882 Cyclophilin-related pe 98.5 6.3E-06 1.4E-10 84.0 17.3 320 506-912 8-369 (558)
316 PF14583 Pectate_lyase22: Olig 98.5 0.00067 1.5E-08 70.7 32.4 280 362-671 41-380 (386)
317 PF06433 Me-amine-dh_H: Methyl 98.5 9.2E-05 2E-09 75.4 25.3 284 578-925 18-330 (342)
318 KOG3617 WD40 and TPR repeat-co 98.5 1.8E-05 3.9E-10 86.8 20.8 341 421-862 18-374 (1416)
319 PF00400 WD40: WD domain, G-be 98.5 4.3E-07 9.3E-12 62.0 5.7 39 874-913 1-39 (39)
320 KOG1920 IkappaB kinase complex 98.4 0.0001 2.2E-09 85.1 27.2 278 356-671 68-364 (1265)
321 KOG2695 WD40 repeat protein [G 98.4 8.8E-07 1.9E-11 87.0 9.2 163 468-639 216-387 (425)
322 KOG1897 Damage-specific DNA bi 98.4 0.0081 1.7E-07 68.5 41.9 544 353-951 303-892 (1096)
323 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0013 2.9E-08 62.8 28.8 150 470-629 17-166 (354)
324 PF06433 Me-amine-dh_H: Methyl 98.4 0.0013 2.9E-08 67.2 30.8 270 379-683 17-330 (342)
325 PF10607 CLTH: CTLH/CRA C-term 98.4 1.9E-06 4.1E-11 79.7 9.4 134 38-182 5-141 (145)
326 KOG1275 PAB-dependent poly(A) 98.3 2E-05 4.3E-10 87.6 17.9 183 429-627 146-341 (1118)
327 KOG4714 Nucleoporin [Nuclear s 98.3 1E-05 2.3E-10 76.6 13.2 200 466-673 39-255 (319)
328 cd00216 PQQ_DH Dehydrogenases 98.3 0.0011 2.4E-08 75.0 30.9 110 522-638 62-193 (488)
329 PF00400 WD40: WD domain, G-be 98.3 1.8E-06 3.8E-11 58.9 5.1 37 917-953 1-37 (39)
330 KOG3621 WD40 repeat-containing 98.2 0.00028 6E-09 76.9 23.1 141 355-516 32-179 (726)
331 KOG1920 IkappaB kinase complex 98.2 0.00014 3.1E-09 84.0 21.8 243 418-674 68-324 (1265)
332 KOG2114 Vacuolar assembly/sort 98.2 0.00018 4E-09 79.9 21.6 200 425-637 30-252 (933)
333 PF11768 DUF3312: Protein of u 98.2 3.5E-05 7.7E-10 82.6 15.6 139 337-498 186-332 (545)
334 KOG2114 Vacuolar assembly/sort 98.2 0.00034 7.5E-09 77.9 22.9 202 363-594 30-252 (933)
335 KOG3617 WD40 and TPR repeat-co 98.2 7.3E-05 1.6E-09 82.2 17.5 271 358-663 61-376 (1416)
336 KOG1645 RING-finger-containing 98.2 0.00012 2.7E-09 74.0 17.5 245 354-628 191-461 (463)
337 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.017 3.7E-07 65.7 37.1 76 864-941 441-517 (527)
338 KOG1275 PAB-dependent poly(A) 98.1 4.1E-05 8.8E-10 85.2 15.1 185 479-671 149-341 (1118)
339 PF14583 Pectate_lyase22: Olig 98.1 0.0067 1.5E-07 63.4 30.2 228 425-663 42-303 (386)
340 PF08513 LisH: LisH; InterPro 98.1 4.1E-06 8.9E-11 50.4 3.8 27 6-32 1-27 (27)
341 PF02897 Peptidase_S9_N: Proly 98.1 0.0078 1.7E-07 67.2 33.0 250 359-633 126-409 (414)
342 PRK02888 nitrous-oxide reducta 98.1 0.0021 4.5E-08 71.3 26.5 284 370-673 67-405 (635)
343 COG0823 TolB Periplasmic compo 98.0 0.00082 1.8E-08 73.3 22.4 192 415-618 189-389 (425)
344 PF11768 DUF3312: Protein of u 98.0 0.00013 2.9E-09 78.3 15.8 85 344-450 247-331 (545)
345 cd00216 PQQ_DH Dehydrogenases 98.0 0.0028 6.1E-08 71.8 27.7 275 372-679 64-431 (488)
346 KOG2066 Vacuolar assembly/sort 98.0 0.00034 7.3E-09 77.4 18.5 185 418-628 39-233 (846)
347 KOG2066 Vacuolar assembly/sort 98.0 0.00022 4.7E-09 78.8 16.9 183 355-585 38-233 (846)
348 smart00668 CTLH C-terminal to 98.0 5.8E-06 1.3E-10 62.2 3.4 52 38-90 5-56 (58)
349 smart00667 LisH Lissencephaly 97.9 1.6E-05 3.4E-10 52.1 4.1 32 4-35 2-33 (34)
350 COG0823 TolB Periplasmic compo 97.9 0.001 2.2E-08 72.6 20.3 196 459-663 188-390 (425)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0093 2E-07 64.5 27.0 242 420-671 3-334 (395)
352 PF04053 Coatomer_WDAD: Coatom 97.9 0.0039 8.4E-08 68.3 24.0 217 416-672 30-262 (443)
353 KOG1008 Uncharacterized conser 97.9 5.1E-06 1.1E-10 88.6 1.5 204 355-585 55-275 (783)
354 PF02897 Peptidase_S9_N: Proly 97.8 0.029 6.4E-07 62.6 31.5 245 419-675 124-407 (414)
355 PF08596 Lgl_C: Lethal giant l 97.8 0.0046 1E-07 66.8 23.7 253 358-617 3-325 (395)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.1 2.2E-06 59.4 34.8 194 479-678 71-338 (527)
357 COG3490 Uncharacterized protei 97.7 0.013 2.8E-07 57.2 22.1 237 587-922 58-317 (366)
358 PF06977 SdiA-regulated: SdiA- 97.7 0.012 2.5E-07 58.9 22.8 191 356-569 21-239 (248)
359 COG3490 Uncharacterized protei 97.7 0.032 7E-07 54.6 23.6 271 348-670 59-346 (366)
360 COG3391 Uncharacterized conser 97.7 0.12 2.5E-06 56.6 31.7 255 357-638 31-293 (381)
361 PF06977 SdiA-regulated: SdiA- 97.7 0.029 6.3E-07 56.1 24.3 213 593-945 17-239 (248)
362 PF00780 CNH: CNH domain; Int 97.6 0.069 1.5E-06 55.8 28.4 231 428-685 5-267 (275)
363 PF04841 Vps16_N: Vps16, N-ter 97.6 0.12 2.6E-06 56.9 30.4 235 419-687 81-328 (410)
364 KOG3621 WD40 repeat-containing 97.5 0.0055 1.2E-07 67.3 18.6 104 355-472 75-179 (726)
365 PF04053 Coatomer_WDAD: Coatom 97.5 0.026 5.5E-07 62.0 23.6 218 355-628 31-262 (443)
366 PF00780 CNH: CNH domain; Int 97.5 0.075 1.6E-06 55.5 26.8 226 371-639 9-266 (275)
367 COG3391 Uncharacterized conser 97.5 0.23 4.9E-06 54.3 30.9 247 420-681 32-291 (381)
368 COG3386 Gluconolactonase [Carb 97.4 0.085 1.8E-06 54.9 24.8 222 362-617 30-274 (307)
369 PF04841 Vps16_N: Vps16, N-ter 97.3 0.11 2.3E-06 57.3 25.5 211 424-654 34-271 (410)
370 PRK10115 protease 2; Provision 97.3 0.55 1.2E-05 55.5 32.8 243 419-674 127-396 (686)
371 PF03178 CPSF_A: CPSF A subuni 97.3 0.081 1.7E-06 56.6 23.9 217 379-624 2-261 (321)
372 PF03178 CPSF_A: CPSF A subuni 97.3 0.12 2.6E-06 55.3 25.1 219 440-670 2-263 (321)
373 KOG2817 Predicted E3 ubiquitin 97.2 0.0028 6.1E-08 64.9 11.0 112 5-118 116-240 (394)
374 COG3386 Gluconolactonase [Carb 97.2 0.19 4.1E-06 52.4 24.6 220 425-661 31-274 (307)
375 KOG1008 Uncharacterized conser 97.2 0.00013 2.7E-09 78.4 1.3 158 509-671 58-224 (783)
376 KOG4640 Anaphase-promoting com 97.1 0.0018 3.9E-08 69.9 9.2 92 843-936 20-114 (665)
377 KOG4640 Anaphase-promoting com 97.1 0.0022 4.7E-08 69.4 9.6 93 357-472 21-114 (665)
378 KOG1897 Damage-specific DNA bi 97.1 0.95 2.1E-05 52.6 49.3 427 464-952 488-937 (1096)
379 KOG4499 Ca2+-binding protein R 97.0 0.17 3.7E-06 48.2 19.9 99 780-894 161-263 (310)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.39 8.4E-06 52.0 25.6 83 553-639 309-409 (415)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.16 3.4E-06 54.9 21.9 83 842-924 306-407 (415)
382 smart00320 WD40 WD40 repeats. 97.0 0.0018 3.9E-08 43.2 5.1 39 874-913 2-40 (40)
383 PF08553 VID27: VID27 cytoplas 97.0 0.026 5.7E-07 65.4 17.0 146 475-627 492-646 (794)
384 PF08553 VID27: VID27 cytoplas 96.9 0.025 5.3E-07 65.6 16.2 70 776-871 577-646 (794)
385 TIGR03074 PQQ_membr_DH membran 96.9 1.6 3.5E-05 51.8 39.4 201 479-680 196-484 (764)
386 KOG4441 Proteins containing BT 96.9 0.096 2.1E-06 60.1 20.6 235 428-674 283-548 (571)
387 KOG2395 Protein involved in va 96.8 0.04 8.7E-07 58.7 15.4 144 429-584 344-499 (644)
388 PRK13616 lipoprotein LpqB; Pro 96.8 0.081 1.8E-06 60.6 19.3 171 357-561 350-550 (591)
389 KOG2395 Protein involved in va 96.8 0.039 8.4E-07 58.8 15.0 145 475-627 344-499 (644)
390 PRK13616 lipoprotein LpqB; Pro 96.8 0.02 4.4E-07 65.5 14.3 136 777-943 350-512 (591)
391 PF14727 PHTB1_N: PTHB1 N-term 96.7 1.2 2.6E-05 48.4 33.1 277 365-674 33-362 (418)
392 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.068 1.5E-06 45.0 13.0 98 363-490 9-109 (111)
393 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.061 1.3E-06 45.3 12.6 100 846-953 2-110 (111)
394 PF05694 SBP56: 56kDa selenium 96.7 1.2 2.6E-05 47.5 27.6 148 522-669 88-274 (461)
395 PF07995 GSDH: Glucose / Sorbo 96.6 1.3 2.8E-05 47.4 27.0 68 600-667 254-330 (331)
396 PRK10115 protease 2; Provision 96.6 2.4 5.3E-05 50.2 36.5 244 358-631 128-397 (686)
397 PHA02713 hypothetical protein; 96.5 0.18 3.9E-06 58.1 19.5 187 479-674 306-535 (557)
398 smart00320 WD40 WD40 repeats. 96.4 0.0068 1.5E-07 40.3 4.7 37 917-953 2-38 (40)
399 PHA02713 hypothetical protein; 96.3 0.32 6.9E-06 56.1 20.2 196 428-635 302-540 (557)
400 KOG1898 Splicing factor 3b, su 96.2 3.9 8.4E-05 48.2 32.0 99 849-952 939-1043(1205)
401 KOG4441 Proteins containing BT 96.1 0.83 1.8E-05 52.6 22.2 232 371-632 287-550 (571)
402 PF05096 Glu_cyclase_2: Glutam 96.1 1.7 3.8E-05 43.4 22.8 187 417-618 43-250 (264)
403 PF05694 SBP56: 56kDa selenium 96.0 2.8 6E-05 44.9 24.6 268 336-617 38-392 (461)
404 PF12894 Apc4_WD40: Anaphase-p 96.0 0.027 5.8E-07 39.4 5.9 34 355-390 10-43 (47)
405 KOG2079 Vacuolar assembly/sort 95.9 0.093 2E-06 60.9 13.0 103 429-537 98-201 (1206)
406 TIGR03074 PQQ_membr_DH membran 95.9 2.9 6.3E-05 49.6 25.4 159 479-638 262-487 (764)
407 PF12894 Apc4_WD40: Anaphase-p 95.7 0.039 8.5E-07 38.6 5.7 34 417-451 10-43 (47)
408 PF05096 Glu_cyclase_2: Glutam 95.6 2.7 5.9E-05 42.1 23.8 184 465-661 46-249 (264)
409 KOG2079 Vacuolar assembly/sort 95.6 0.036 7.7E-07 64.2 8.0 98 853-951 97-199 (1206)
410 PF10647 Gmad1: Lipoprotein Lp 95.5 1.9 4.1E-05 44.0 19.9 148 358-529 25-185 (253)
411 KOG4499 Ca2+-binding protein R 95.5 2.2 4.7E-05 41.1 18.0 138 463-609 108-264 (310)
412 PHA03098 kelch-like protein; P 95.3 1.1 2.4E-05 52.0 19.5 150 522-674 344-513 (534)
413 PF10647 Gmad1: Lipoprotein Lp 95.3 4.1 8.8E-05 41.6 23.2 66 600-670 25-93 (253)
414 COG3204 Uncharacterized protei 95.2 3.8 8.3E-05 41.2 21.7 168 415-592 82-269 (316)
415 KOG2444 WD40 repeat protein [G 95.2 0.031 6.7E-07 53.2 4.9 143 523-673 32-178 (238)
416 COG3204 Uncharacterized protei 95.0 4.6 9.9E-05 40.6 19.4 190 356-568 85-300 (316)
417 PF12234 Rav1p_C: RAVE protein 95.0 0.82 1.8E-05 52.0 16.2 112 465-584 31-155 (631)
418 PHA03098 kelch-like protein; P 94.6 1.7 3.6E-05 50.5 18.6 196 428-632 293-515 (534)
419 KOG2444 WD40 repeat protein [G 94.6 0.12 2.6E-06 49.3 7.1 102 371-495 72-177 (238)
420 PF10168 Nup88: Nuclear pore c 94.0 11 0.00024 44.6 23.1 97 418-541 84-181 (717)
421 PF15390 DUF4613: Domain of un 94.0 12 0.00026 41.5 29.1 125 353-495 53-186 (671)
422 TIGR03118 PEPCTERM_chp_1 conse 94.0 8.1 0.00017 39.3 22.9 212 465-683 24-289 (336)
423 PF07995 GSDH: Glucose / Sorbo 93.9 11 0.00023 40.4 28.8 68 842-910 251-330 (331)
424 PF12234 Rav1p_C: RAVE protein 93.6 1.1 2.4E-05 50.9 13.6 113 357-493 30-154 (631)
425 PHA02790 Kelch-like protein; P 93.5 3.9 8.5E-05 46.4 18.3 186 479-674 274-472 (480)
426 TIGR02604 Piru_Ver_Nterm putat 93.5 1.9 4.1E-05 47.0 15.1 100 844-947 72-203 (367)
427 KOG1916 Nuclear protein, conta 93.1 0.2 4.2E-06 57.1 6.7 146 749-920 153-328 (1283)
428 PF10168 Nup88: Nuclear pore c 93.0 8.4 0.00018 45.5 20.0 40 643-682 147-189 (717)
429 KOG1916 Nuclear protein, conta 93.0 0.05 1.1E-06 61.6 1.9 118 784-915 243-374 (1283)
430 TIGR03118 PEPCTERM_chp_1 conse 92.9 12 0.00026 38.1 26.3 85 863-948 221-324 (336)
431 PF10313 DUF2415: Uncharacteri 92.8 0.31 6.7E-06 33.0 4.7 33 885-917 1-35 (43)
432 KOG3630 Nuclear pore complex, 92.7 1.9 4.2E-05 51.0 13.7 99 844-945 156-261 (1405)
433 KOG3630 Nuclear pore complex, 92.7 1.1 2.4E-05 52.8 11.8 147 465-617 102-262 (1405)
434 COG1520 FOG: WD40-like repeat 92.6 18 0.0004 39.4 23.5 198 432-639 70-279 (370)
435 PF13449 Phytase-like: Esteras 92.6 7.7 0.00017 41.4 17.8 159 776-944 19-231 (326)
436 PHA02790 Kelch-like protein; P 92.3 5.3 0.00012 45.3 17.0 187 429-630 271-472 (480)
437 PF15390 DUF4613: Domain of un 92.0 4.8 0.0001 44.5 14.8 154 418-586 19-187 (671)
438 KOG2280 Vacuolar assembly/sort 91.9 19 0.0004 41.3 19.5 165 419-594 84-255 (829)
439 KOG2247 WD40 repeat-containing 91.8 0.031 6.7E-07 59.0 -1.4 145 777-951 35-182 (615)
440 PF10313 DUF2415: Uncharacteri 91.7 0.61 1.3E-05 31.6 5.0 32 357-388 1-34 (43)
441 COG3823 Glutamine cyclotransfe 91.5 13 0.00028 35.4 16.8 173 479-660 58-247 (262)
442 PRK14131 N-acetylneuraminic ac 91.1 27 0.00058 38.2 20.8 40 622-663 314-353 (376)
443 TIGR03548 mutarot_permut cycli 90.6 27 0.00058 37.3 22.0 109 479-590 75-199 (323)
444 KOG2280 Vacuolar assembly/sort 90.2 22 0.00048 40.8 18.1 183 439-638 63-256 (829)
445 PF14870 PSII_BNR: Photosynthe 90.1 26 0.00057 36.5 27.0 227 417-663 15-253 (302)
446 COG5167 VID27 Protein involved 89.9 18 0.0004 39.2 16.4 153 466-628 469-632 (776)
447 COG3823 Glutamine cyclotransfe 89.9 15 0.00032 35.0 14.0 175 429-617 55-247 (262)
448 PF08728 CRT10: CRT10; InterP 89.6 23 0.00049 41.3 18.3 164 371-538 51-245 (717)
449 PF03022 MRJP: Major royal jel 89.6 29 0.00062 36.2 19.0 166 488-659 35-252 (287)
450 COG3292 Predicted periplasmic 89.2 41 0.00089 37.4 18.8 277 353-668 161-443 (671)
451 KOG1900 Nuclear pore complex, 89.0 4.7 0.0001 48.9 12.7 170 346-541 68-274 (1311)
452 KOG2377 Uncharacterized conser 88.8 7.5 0.00016 41.4 12.6 154 328-501 38-191 (657)
453 TIGR02604 Piru_Ver_Nterm putat 88.7 11 0.00025 40.9 15.1 102 357-476 14-136 (367)
454 COG5276 Uncharacterized conser 88.5 30 0.00065 35.0 28.1 186 330-546 56-248 (370)
455 COG4590 ABC-type uncharacteriz 88.1 4.6 0.0001 42.8 10.5 164 414-589 216-390 (733)
456 COG4257 Vgb Streptogramin lyas 87.6 33 0.00071 34.4 20.8 233 419-674 62-307 (353)
457 PLN00033 photosystem II stabil 87.4 42 0.00092 36.7 18.1 152 356-536 238-396 (398)
458 PF14727 PHTB1_N: PTHB1 N-term 87.3 50 0.0011 36.2 27.3 99 851-954 249-357 (418)
459 PF07676 PD40: WD40-like Beta 87.3 2.6 5.5E-05 28.1 5.7 30 355-384 7-38 (39)
460 PF14761 HPS3_N: Hermansky-Pud 87.0 18 0.0004 34.9 13.1 163 740-915 29-214 (215)
461 PRK13684 Ycf48-like protein; P 86.6 49 0.0011 35.4 32.3 153 507-671 172-330 (334)
462 PF11725 AvrE: Pathogenicity f 86.5 1.1E+02 0.0023 39.2 22.7 149 355-540 361-517 (1774)
463 TIGR02276 beta_rpt_yvtn 40-res 86.5 2.5 5.5E-05 28.6 5.5 40 853-893 1-42 (42)
464 PF08728 CRT10: CRT10; InterP 85.7 3.8 8.2E-05 47.3 9.3 124 369-494 114-245 (717)
465 KOG2247 WD40 repeat-containing 85.7 0.17 3.7E-06 53.6 -1.1 140 329-493 41-186 (615)
466 KOG1983 Tomosyn and related SN 85.5 26 0.00057 43.3 16.9 34 358-392 37-70 (993)
467 TIGR03547 muta_rot_YjhT mutatr 85.1 60 0.0013 35.0 21.7 13 488-500 86-98 (346)
468 PF12657 TFIIIC_delta: Transcr 85.1 4.8 0.0001 38.2 8.5 31 419-449 86-122 (173)
469 PF14870 PSII_BNR: Photosynthe 84.9 53 0.0012 34.3 32.4 283 352-669 12-301 (302)
470 PF07569 Hira: TUP1-like enhan 84.7 5.3 0.00011 39.5 8.8 68 606-674 18-97 (219)
471 PLN02193 nitrile-specifier pro 83.9 83 0.0018 35.6 22.9 149 479-633 231-415 (470)
472 COG5276 Uncharacterized conser 83.3 55 0.0012 33.2 29.3 151 508-673 87-242 (370)
473 COG5290 IkappaB kinase complex 83.3 28 0.00061 40.0 14.1 102 423-528 251-357 (1243)
474 smart00036 CNH Domain found in 83.2 65 0.0014 33.9 29.3 236 371-638 15-280 (302)
475 PF07569 Hira: TUP1-like enhan 83.0 6.8 0.00015 38.8 8.8 72 426-500 18-100 (219)
476 TIGR03548 mutarot_permut cycli 82.9 70 0.0015 34.1 18.8 69 562-632 123-198 (323)
477 PLN02153 epithiospecifier prot 82.9 73 0.0016 34.3 21.5 54 578-632 218-288 (341)
478 cd08044 TAF5_NTD2 TAF5_NTD2 is 82.7 2.4 5.1E-05 38.1 5.0 58 72-129 29-86 (133)
479 KOG4460 Nuclear pore complex, 82.7 16 0.00035 39.7 11.6 95 775-877 102-203 (741)
480 PF12768 Rax2: Cortical protei 82.6 30 0.00065 35.7 13.4 104 487-592 16-130 (281)
481 PF11725 AvrE: Pathogenicity f 82.4 1.1E+02 0.0024 39.2 19.7 150 506-673 361-517 (1774)
482 PF14761 HPS3_N: Hermansky-Pud 82.1 51 0.0011 32.0 15.4 49 611-662 29-79 (215)
483 KOG4659 Uncharacterized conser 81.1 1.5E+02 0.0033 36.8 31.7 27 775-803 660-686 (1899)
484 PF07250 Glyoxal_oxid_N: Glyox 81.0 28 0.00061 34.9 12.2 146 534-683 49-207 (243)
485 PF04494 TFIID_90kDa: WD40 ass 80.6 2.8 6E-05 38.2 4.7 54 72-125 40-93 (142)
486 PRK14131 N-acetylneuraminic ac 80.2 97 0.0021 33.9 22.4 14 487-500 189-202 (376)
487 PF12657 TFIIIC_delta: Transcr 80.0 9.9 0.00021 36.1 8.5 29 844-873 5-33 (173)
488 PRK13684 Ycf48-like protein; P 80.0 89 0.0019 33.4 31.2 65 600-667 174-238 (334)
489 COG5167 VID27 Protein involved 80.0 30 0.00064 37.7 12.3 145 428-585 477-632 (776)
490 PF12768 Rax2: Cortical protei 79.1 63 0.0014 33.3 14.4 114 379-516 16-145 (281)
491 KOG4460 Nuclear pore complex, 78.4 56 0.0012 35.9 13.8 39 600-638 167-208 (741)
492 TIGR03606 non_repeat_PQQ dehyd 78.0 1.2E+02 0.0026 33.8 30.2 63 355-430 28-90 (454)
493 KOG1898 Splicing factor 3b, su 77.4 1.8E+02 0.0038 35.4 33.1 81 417-498 581-676 (1205)
494 KOG1900 Nuclear pore complex, 77.3 49 0.0011 40.8 14.5 162 462-629 77-273 (1311)
495 PF02333 Phytase: Phytase; In 76.9 1.1E+02 0.0025 32.9 25.7 197 479-681 70-299 (381)
496 PF09862 DUF2089: Protein of u 76.8 9.6 0.00021 32.5 6.3 79 2-98 32-113 (113)
497 PF11715 Nup160: Nucleoporin N 76.6 13 0.00027 43.3 9.8 76 428-506 156-259 (547)
498 PF05935 Arylsulfotrans: Aryls 76.1 1.4E+02 0.0031 33.7 19.0 198 478-687 67-315 (477)
499 TIGR02276 beta_rpt_yvtn 40-res 75.6 9.6 0.00021 25.7 5.3 40 896-936 2-42 (42)
500 PF11635 Med16: Mediator compl 74.9 2E+02 0.0044 34.8 20.2 68 600-667 261-345 (753)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-69 Score=520.86 Aligned_cols=491 Identities=22% Similarity=0.334 Sum_probs=403.9
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc---HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHH
Q 002196 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (954)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (954)
+.|++||++|+|..+||.+|+.+||.|+|+.++ .+.|.++++.|+|+.++..+......+ +....++.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 899999999999999999998885444 4445569999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccc-cccchhhcccCCChhHHHHHHHHHHhhcccCcccccc
Q 002196 82 LEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLEN-FRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDK 160 (954)
Q Consensus 82 ~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 160 (954)
||++..+...+|+.+||+.+.++.. +.++|++|..-|..++ ...++. ..-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 9999999999999999999888774 8999999988665543 333332 21223467899999999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCccceeeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 002196 161 LQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240 (954)
Q Consensus 161 ~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (954)
+|++||++||+||++||.++|.|||+ .+..|||.||.|++ . ++| ++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~-----------~----qip-------------~q 215 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR-----------L----QIP-------------SQ 215 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc-----------c----cCC-------------ch
Confidence 99999999999999999999999996 66689999999999 2 222 11
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCcccccCCchhhccCCCCCCCCCCCccccCCCChhhhhhcCCCCCCcccccc
Q 002196 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNN 320 (954)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 320 (954)
.- +++. .|+||||
T Consensus 216 t~-------------------------------------------------------------qil~-----~htdEVW- 228 (519)
T KOG0293|consen 216 TW-------------------------------------------------------------QILQ-----DHTDEVW- 228 (519)
T ss_pred hh-------------------------------------------------------------hhHh-----hCCCcEE-
Confidence 10 1111 6777777
Q ss_pred cccceeeeeeCCCCCcceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEE
Q 002196 321 LSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW 400 (954)
Q Consensus 321 ~~~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 400 (954)
.+.||++|+ +||++++|.+..||++.......
T Consensus 229 ----------------------------------------fl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k------- 260 (519)
T KOG0293|consen 229 ----------------------------------------FLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK------- 260 (519)
T ss_pred ----------------------------------------EEEEcCCCe-eEeeccCCceEEEEEEecCccee-------
Confidence 788999998 78999999999999987654321
Q ss_pred eccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEE
Q 002196 401 ELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480 (954)
Q Consensus 401 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l 480 (954)
....+.+|..+|..+.||||.++|++++.|..+.+||+.+|....... .+|...+.+++|.|||. .+
T Consensus 261 ---------l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~ 327 (519)
T KOG0293|consen 261 ---------LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RF 327 (519)
T ss_pred ---------eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--ee
Confidence 112367899999999999999999999999999999999998765321 23568899999999999 59
Q ss_pred EEEcCCCeEEEEECCCCceEEEeccCC-CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEE
Q 002196 481 VTCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559 (954)
Q Consensus 481 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 559 (954)
++|+.|+++..||++ |+.+...++-. ..|.++++.+++ +++++.+.|..|++++..+..... ......++++++.
T Consensus 328 V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg--k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~i 403 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG--KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSI 403 (519)
T ss_pred EecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCC--cEEEEEecccceeeechhhhhhhc-cccccCceeEEEE
Confidence 999999999999964 55566665533 558889887655 899999999999999987654443 2334568999999
Q ss_pred CCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCC-eEEEEEeC-CCCEEEEEECCCeEEEEECCCCceeEEEe
Q 002196 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS-VGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 560 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
|.|++++++.-.+. .+.+||++....++++.||.... +-.-||.. +..++++|++|+.|+||+..+|+++..+.
T Consensus 404 S~d~k~~LvnL~~q----ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQ----EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred cCCCcEEEEEcccC----eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 99999998876544 49999999999999999986532 22335554 44899999999999999999999999999
Q ss_pred cCCCCCCcceEEECC-CCCEEEEEeCCCcEEEEEccCC
Q 002196 638 ADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 638 ~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+| ...|+||+|+| +..++|++++||+||||.+...
T Consensus 480 GH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 480 GH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 77 66899999999 6678999999999999987643
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-66 Score=487.45 Aligned_cols=489 Identities=19% Similarity=0.297 Sum_probs=399.8
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc----HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHH
Q 002196 4 LSRELVFLILQFLDEEKFKETVHKLEQDSGFFFN----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (954)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (954)
-+.||+|||.|||+|+.|++++++||+|++++|| ++.|.+.|.+|+||.|++.+++|++++ +-+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHH
Confidence 4679999999999999999999999999999998 899999999999999999999995554 478999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHh--cccccccChHHHHHHHHhhcccccccchhhcccCCChhHHHHHHHHHHhhcccCccc
Q 002196 80 KYLEALDKRDRAKAVEILVKD--LKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLF 157 (954)
Q Consensus 80 ~~~ell~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~ 157 (954)
..+||+|.++...|..+||+. +..|+..+|+||.+|+.||..+.+++++.+.+ ...+.+|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 999999999999999999986 77778889999999999999999999998654 22344456666666655554
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHhhcCCCCCCCCc-cceeeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 002196 158 RDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDI-KTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH 236 (954)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~-~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (954)
+||+||+.||+|||+||.++.+.| |+. .+|
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDL-------------------------------------- 185 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDL-------------------------------------- 185 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCC---CCceeee--------------------------------------
Confidence 999999999999999999988765 211 122
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCCCCCcccccCCchhhccCCCCCCCCCCCccccCCCChhhhhhcCCCCCCcc
Q 002196 237 GPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISD 316 (954)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 316 (954)
|++.++ .+-...++.|+++...+
T Consensus 186 --FRGkAA-----------------------------------~K~~~Ee~~Pt~l~r~I-------------------- 208 (508)
T KOG0275|consen 186 --FRGKAA-----------------------------------MKDQEEERYPTQLARSI-------------------- 208 (508)
T ss_pred --ccchhh-----------------------------------hhhhHhhhchHHhhhhe--------------------
Confidence 222221 22222222232111111
Q ss_pred cccccccceeeeeeCCCCCcceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeee
Q 002196 317 EVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 396 (954)
Q Consensus 317 ~v~~~~~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~ 396 (954)
.++..+.+-|..|||||+ +|++|+.||.|.+|+..+|+......
T Consensus 209 -----------------------------------KFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLk 252 (508)
T KOG0275|consen 209 -----------------------------------KFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLK 252 (508)
T ss_pred -----------------------------------ecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhh
Confidence 122334577999999999 78999999999999999998765321
Q ss_pred eEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCC
Q 002196 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPN 475 (954)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~ 475 (954)
+. ...-+--+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++ .+. +|+..|+|+.|+.|+
T Consensus 253 YQ-----------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 253 YQ-----------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred hh-----------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence 11 112244588999999999999999999999999999999999998 454 899999999999999
Q ss_pred CceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC--c
Q 002196 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--S 553 (954)
Q Consensus 476 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~ 553 (954)
. .+++++.|.++++.-+.+|+++..|++|.+.|+...|.+++ ..+++++.||+|++|+..+.++...+...+. +
T Consensus 319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG--~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~ 394 (508)
T KOG0275|consen 319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG--HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP 394 (508)
T ss_pred c--hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC--CeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence 9 48999999999999999999999999999999999987655 8999999999999999999988877765443 7
Q ss_pred eEEEEECCCC-CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 554 STMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 554 v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
|+++..-|.. ..+++|.. ..++++.++. |+.++.+.... ++...+++++|.|.++++.++|+.++.+...+|
T Consensus 395 vnsv~~~PKnpeh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 395 VNSVILLPKNPEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred ceeEEEcCCCCceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 8888877754 56666654 3358888864 78888876542 234566789999999999999999999999999
Q ss_pred ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
+...++..| ...+..++-+|..+.+|+-+.||.+++|.
T Consensus 470 ~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeecc--cccccccccCcccchhhhhcccchhhhcC
Confidence 999999887 44788999999999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-54 Score=452.06 Aligned_cols=529 Identities=18% Similarity=0.263 Sum_probs=427.0
Q ss_pred eeeeeeCCCCCcceeecCCCC-------CcceEEEec--CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeee
Q 002196 325 ILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (954)
Q Consensus 325 i~~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~--h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~ 395 (954)
+++++.+||+.++.++..... .+.+++... |.+||.-++|+|.|. ++++|+.||.|+|||+..+.+...
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~th~- 142 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNGYCTHS- 142 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCCEEEEE-
Confidence 456788888887776655433 245556555 899999999999995 999999999999999999988875
Q ss_pred eeEEEeccCCCccccccccCCCCCCeEEEEEccCCC--EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec
Q 002196 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473 (954)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 473 (954)
+.||.+.|.++.|.|+-+ .|++|..|+.+++||+.++.. +...+..|...|++++|++
T Consensus 143 ------------------fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~ 202 (775)
T KOG0319|consen 143 ------------------FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSE 202 (775)
T ss_pred ------------------ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeecc
Confidence 899999999999999754 589999999999999996554 2336789999999999999
Q ss_pred CCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeecc---CCccEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 002196 474 PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (954)
Q Consensus 474 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 550 (954)
|+. .++++++|..+.+||+.+.++..++.- ...+.++.+.+. ..+.+++|++.+|.+++||.++..........
T Consensus 203 d~~--~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~ 279 (775)
T KOG0319|consen 203 DSL--ELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS 279 (775)
T ss_pred CCc--eEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccC
Confidence 988 689999999999999988777776653 333555555444 12369999999999999999887765544333
Q ss_pred -CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEE-eCCCCEEEEEECCCeEEEEECC
Q 002196 551 -GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-DTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 551 -~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
...+..+...+....++..+. +..+.++|.++.++.+.+.|.++ .|..++| .|+.++++.++..+.+++|+..
T Consensus 280 ~~~e~~~~~~~~~~~~~l~vta----eQnl~l~d~~~l~i~k~ivG~nd-EI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 280 DSEEIDHLLAIESMSQLLLVTA----EQNLFLYDEDELTIVKQIVGYND-EILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred CchhhhcceeccccCceEEEEc----cceEEEEEccccEEehhhcCCch-hheeeeecCCccceEEEEeCCCceEEEecC
Confidence 223555555444444444444 33499999999999999999888 7887765 5777999999999999999998
Q ss_pred CCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC---CeeEEEeccccccceecchhccccCCccccc
Q 002196 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG---IRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (954)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 705 (954)
+..+. .+.+| ...|.++....+|.+|++|+.|.++++|.++++ ..++....+|...+..++.+.
T Consensus 355 ~~~c~-ii~GH--~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~---------- 421 (775)
T KOG0319|consen 355 TSYCQ-IIPGH--TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK---------- 421 (775)
T ss_pred CCceE-EEeCc--hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc----------
Confidence 87776 55544 778999986677889999999999999988544 234455566776666543311
Q ss_pred cCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEE--ecCCCCCccceEEEE
Q 002196 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSL--RLPDNLTAMRVSRLI 783 (954)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~ 783 (954)
.....+++++.|.++++|++........+..+ ......|...|.+++
T Consensus 422 -------------------------------~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 422 -------------------------------LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred -------------------------------cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 12356889999999999999873322222221 223467999999999
Q ss_pred EecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-
Q 002196 784 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS- 862 (954)
Q Consensus 784 ~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s- 862 (954)
++|+.+.+++++.|++.+||+++. ... ...+.| |...|.|+.|+|..+.+|++|
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~----------------------~~l-~~vLsG--H~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQ----------------------LRL-LGVLSG--HTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred ecCCCceEEecccccceeeecccC----------------------ceE-EEEeeC--CccceEEEEeccccceeEeccC
Confidence 999999999999999999997652 122 223666 999999999999999999999
Q ss_pred CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeE
Q 002196 863 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVL 942 (954)
Q Consensus 863 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 942 (954)
|.+|+||.+.++.|+++|.||...|..+.|-. +|..|++++.||.+++|++++++|+.++.+|.+.|++++-+|++.++
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred CceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcccee
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEecCCcceec
Q 002196 943 VSSGADSQVRN 953 (954)
Q Consensus 943 ~s~s~Dg~I~i 953 (954)
+|||.||.|.+
T Consensus 605 ~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 605 VTGGGDGRIIF 615 (775)
T ss_pred EecCCCeEEEE
Confidence 99999998753
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-53 Score=445.82 Aligned_cols=530 Identities=15% Similarity=0.252 Sum_probs=432.2
Q ss_pred eeeCCCCCcceeecCCCC------Ccce-EEEec--CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeE
Q 002196 328 VAYTPQSLGQSSYSTDDL------PKTV-VMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (954)
Q Consensus 328 ~~~s~~g~~~~~~~~~~~------~~~~-~~~~~--h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~ 398 (954)
++|+++|+.+++...+.. +... +.... ....+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 579999999999877743 2222 22222 457899999999988 788999999999999999977653
Q ss_pred EEeccCCCccccccccCC-CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCc
Q 002196 399 VWELGACSMPLQASLSSD-YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477 (954)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 477 (954)
.+. |++||.-++|+|.|.+|++|+.|+.++|||+..+.+.. .+.||.+.|.++.|.|+-.+
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 333 99999999999999999999999999999999987776 89999999999999999876
Q ss_pred eEEEEEcCCCeEEEEECCCCce-EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEE
Q 002196 478 LSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (954)
Q Consensus 478 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 556 (954)
..|++|..|+++++||+.++.. +..+..|.+.|+++.+.+++ ..+++++.|..+.+||+...+....... ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 6789999999999999996654 88889999999999998875 7899999999999999966555444332 235666
Q ss_pred EEECCC-----CCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 557 MAYSAD-----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 557 ~~~s~~-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
+.+-++ |.+++++|.+ +.++.||.+++.+...........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~~----g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGGS----GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecCC----ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 777666 6688888754 4599999999988766554433346666666666777888888999999999999
Q ss_pred eeEEEecCCCCCCcceEEE-CCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCC
Q 002196 632 LLASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (954)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 710 (954)
....+-+. ...|..+.| .|+.++||+++..+.+|+|+..+. ..+.+.||.+.+.++..
T Consensus 315 i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vlSL~~----------------- 373 (775)
T KOG0319|consen 315 IVKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVLSLDV----------------- 373 (775)
T ss_pred EehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhheeeeee-----------------
Confidence 88888765 457888876 567799999999999999988776 33488999988776531
Q ss_pred CccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCC-c
Q 002196 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG-L 789 (954)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~ 789 (954)
..++..+++++.|.++++|.+++......+ .....+|.+.|.+++++..+ .
T Consensus 374 -------------------------~~~g~llat~sKD~svilWr~~~~~~~~~~---~a~~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 374 -------------------------WSSGDLLATGSKDKSVILWRLNNNCSKSLC---VAQANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred -------------------------cccCcEEEEecCCceEEEEEecCCcchhhh---hhhhcccccccceeeecccCcc
Confidence 123568999999999999999542222221 22346799999999998776 5
Q ss_pred eEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEE
Q 002196 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISL 868 (954)
Q Consensus 790 ~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~i 868 (954)
.+++++.|+++++|+++..... + ....+........|...|.+++++|+.+++|+|+ |.+.+|
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~------~----------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKET------A----------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred EEEEecCCceEEEecCCCcccc------c----------ccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 7889999999999998751110 0 0001100111223999999999999999999999 999999
Q ss_pred EEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCC
Q 002196 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (954)
Q Consensus 869 wd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~D 948 (954)
|+++.+....++.||...|.++.|+| ..+.+||+|.|++|+||.+++..|+.+|.||...|..+.|-.+|+.|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred cceec
Q 002196 949 SQVRN 953 (954)
Q Consensus 949 g~I~i 953 (954)
|-|||
T Consensus 569 GliKl 573 (775)
T KOG0319|consen 569 GLIKL 573 (775)
T ss_pred CcEEE
Confidence 99986
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-49 Score=399.22 Aligned_cols=531 Identities=15% Similarity=0.223 Sum_probs=392.3
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
-+|...++-..|||.|- ++|+|...|+|+|||....+.+....+ ..-.++|..++|++|++.
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-----------------~v~aG~I~Di~Wd~ds~R 117 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-----------------QVLAGPIKDISWDFDSKR 117 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee-----------------eecccccccceeCCCCcE
Confidence 34899999999999998 889999999999999988665544333 335689999999999999
Q ss_pred EEEEEcC--CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 433 FGVAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 433 l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
|++.+.. ...+++-.++|..+. .+.+|...|+++.|-|.... .++||+.|++|.+|+-.--+...++..|...|
T Consensus 118 I~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV 193 (603)
T KOG0318|consen 118 IAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFV 193 (603)
T ss_pred EEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccce
Confidence 9887553 334444444565555 78999999999999998776 79999999999999977677778888999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee---CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
+++.|+|++ .++++.+.||+|.+||-.+++....+. .|.+.|..++|+||+..+++++.|.. +++||..+.
T Consensus 194 ~~VRysPDG--~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt----~KIWdVs~~ 267 (603)
T KOG0318|consen 194 NCVRYSPDG--SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT----IKIWDVSTN 267 (603)
T ss_pred eeEEECCCC--CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce----EEEEEeecc
Confidence 999999875 899999999999999999998888777 77889999999999999999987654 999999999
Q ss_pred eEEEEEecCCC--CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCc
Q 002196 588 AVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (954)
Q Consensus 588 ~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 665 (954)
++++++..... .....+.|. ...|++.+.+|.|.+++......+..+.+| ...|++++.+|++.+|.+|+.||.
T Consensus 268 slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred ceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEeeccCce
Confidence 99998865432 122233454 678999999999999999999999999877 668999999999999999999999
Q ss_pred EEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCC-CCCccccc
Q 002196 666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF-TDVKPKIA 744 (954)
Q Consensus 666 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvs 744 (954)
|.-|+..++......-++|...+..+.......--....... ...++-................|.+... .++..++.
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~-l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT-LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe-EEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 999999988333222356666666543332100000000000 0000000000000000011111111111 11111111
Q ss_pred ccccccccccc-cccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCcc
Q 002196 745 DEAVEKSRIWK-LTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 823 (954)
Q Consensus 745 ~~~d~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~ 823 (954)
... ..|.+.. .. .+..+. -.....+++++|+++.+++|+.||.+++|.+..........
T Consensus 423 ~~~-~~iv~l~~~~------~~~~~~-----~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-------- 482 (603)
T KOG0318|consen 423 ACI-SDIVLLQDQT------KVSSIP-----IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-------- 482 (603)
T ss_pred Eec-CcEEEEecCC------cceeec-----cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee--------
Confidence 111 2222221 11 111111 23456789999999999999999999999887532211111
Q ss_pred ccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeC-CCCCCeeEEEecCCCCceEE
Q 002196 824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIA 901 (954)
Q Consensus 824 l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~d~~~la 901 (954)
+. .|..+|++++||||+.|||++. .+++.+||+.+.+.....- -|++.|.+++||| +..++|
T Consensus 483 -------------~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vA 546 (603)
T KOG0318|consen 483 -------------LL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVA 546 (603)
T ss_pred -------------ee--cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEE
Confidence 11 2899999999999999999999 8999999999888754433 3999999999999 999999
Q ss_pred EEecCccEEEEecccc-ceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 902 IGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 902 sgs~dg~i~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
+|+-|-+|.||+++.. +.+....+|...|+.|.|- |...|+|+|.|.+||+
T Consensus 547 TGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~ 598 (603)
T KOG0318|consen 547 TGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKV 598 (603)
T ss_pred eccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEE
Confidence 9999999999999875 4455566899999999998 5568999999999985
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-48 Score=408.18 Aligned_cols=518 Identities=16% Similarity=0.250 Sum_probs=413.8
Q ss_pred eeeeCCCCCcceeecCCCC-------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEE
Q 002196 327 PVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKV 399 (954)
Q Consensus 327 ~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~ 399 (954)
.+.|++||..+.+...+.. .+.....+.+...|.+++.||+|. +|++....|...+-++.....++...
T Consensus 19 nl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--- 94 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--- 94 (893)
T ss_pred cEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe---
Confidence 3567888777766655543 233445566899999999999998 67777788888888887776665422
Q ss_pred EeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcc-----eeeeeeeecccCCEEEEEEecC
Q 002196 400 WELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYP 474 (954)
Q Consensus 400 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~ 474 (954)
...+|.|+.|||||+++|.|. .+.+.||....... .....++.+|...|+++.|+.|
T Consensus 95 -----------------fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 95 -----------------FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred -----------------ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccC
Confidence 357999999999999999884 46799998754322 2233467789999999999999
Q ss_pred CCceEEEEEcCCCeEEEEECCCCce--EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC-----------
Q 002196 475 NKQLSVVTCGEDRVIKVWDAVTGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL----------- 541 (954)
Q Consensus 475 ~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------- 541 (954)
.+ +|++|+.|.++++|+++..+- .+.+.+|.+.|.++-|..+. ..+++.+.||.+.+|.....
T Consensus 157 Sr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~ 232 (893)
T KOG0291|consen 157 SR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDE 232 (893)
T ss_pred Cc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccc
Confidence 98 899999999999999887665 67789999999988887655 67999999999999977611
Q ss_pred ------------Cc-----e------eEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC
Q 002196 542 ------------GS-----R------VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598 (954)
Q Consensus 542 ------------~~-----~------~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 598 (954)
+. . ..+......+++.+|++.-+.|+++-.++ ...+|.+....+++.+.-...
T Consensus 233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG----~f~LyelP~f~lih~LSis~~ 308 (893)
T KOG0291|consen 233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG----EFGLYELPDFNLIHSLSISDQ 308 (893)
T ss_pred cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC----eeEEEecCCceEEEEeecccc
Confidence 11 0 01112235789999999988898887654 378999999999998887655
Q ss_pred CCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCee
Q 002196 599 RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (954)
Q Consensus 599 ~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 677 (954)
.|..++|+..|.+|+.|+ .=|.+-||+..+..-+...++| ...+++++++|||+++|+|++||.|+|||..++ -+
T Consensus 309 -~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC 384 (893)
T KOG0291|consen 309 -KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FC 384 (893)
T ss_pred -eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eE
Confidence 899999999999999998 4589999999987777666655 779999999999999999999999999999999 89
Q ss_pred EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 002196 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (954)
Q Consensus 678 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~ 757 (954)
..++..|...++.+.+. ..++.+++.+.||+|+.||+.
T Consensus 385 ~vTFteHts~Vt~v~f~------------------------------------------~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFT------------------------------------------ARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred EEEeccCCCceEEEEEE------------------------------------------ecCCEEEEeecCCeEEeeeec
Confidence 99999999988876443 447889999999999999997
Q ss_pred cccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecC-CeEEEeeccCCCCCCCCcccCCCCccccCCCCccccccc
Q 002196 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN-AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836 (954)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d-g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~ 836 (954)
. ....+.+..|. .....+++..|.|..+++|+.| =.|.+ |+.++|+++..
T Consensus 423 R---YrNfRTft~P~---p~QfscvavD~sGelV~AG~~d~F~Ifv----------------------WS~qTGqllDi- 473 (893)
T KOG0291|consen 423 R---YRNFRTFTSPE---PIQFSCVAVDPSGELVCAGAQDSFEIFV----------------------WSVQTGQLLDI- 473 (893)
T ss_pred c---cceeeeecCCC---ceeeeEEEEcCCCCEEEeeccceEEEEE----------------------EEeecCeeeeh-
Confidence 5 23334444332 4556788888999988888877 24444 55667776653
Q ss_pred CCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccc-cEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEec
Q 002196 837 ISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (954)
Q Consensus 837 ~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~ 914 (954)
+.| |.++|.+++|+|+|..||+++ |.+|++||+-.. ..+-++. +...+..++|+| ||+-||++..||.|.+||+
T Consensus 474 LsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 474 LSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDI 549 (893)
T ss_pred hcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEh
Confidence 666 999999999999999999999 999999998654 3444455 677899999999 9999999999999999999
Q ss_pred cccceEEEecC--------------------CccceeEEEEecCCCeEEEecCCcceec
Q 002196 915 RVDEVKTKLKG--------------------HQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 915 ~~~~~~~~~~~--------------------h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
+.+..+..+.| .....+.+++|+||+++++||..+.|+|
T Consensus 550 ~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred hhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 87655543332 2246899999999999999999999886
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-49 Score=409.92 Aligned_cols=495 Identities=15% Similarity=0.204 Sum_probs=394.6
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
...+|+|++-+|+.- +||+|..||.|+||+..++....+ +.+|..+|+++.|+..|..||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 345899999999987 899999999999999998866544 789999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 514 (954)
+||.|+.|.+||+-...-.. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+.+..|..+.-.|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999997654343 6899999999999998666 799999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCce------e-------EeeCCCCceEEEEECCCCCEEEEEEeCC--------
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSR------V-------DYDAPGHSSTMMAYSADGARLFSCGTNK-------- 573 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~-------- 573 (954)
+.+ +.+++++.|+.+++|++...... . ......+....+...++++++++-+.|.
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 876 57999999999999998211000 0 0000111122223333333333332100
Q ss_pred ----------------------------------------------------------C--------CceEEEEEeCCC-
Q 002196 574 ----------------------------------------------------------E--------GESYLVEWNESE- 586 (954)
Q Consensus 574 ----------------------------------------------------------~--------~~~~i~iwd~~~- 586 (954)
. .+..+..|.+..
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s 354 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS 354 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence 0 011233443332
Q ss_pred CeE--------EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEE
Q 002196 587 GAV--------KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (954)
Q Consensus 587 ~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (954)
+.. ...+.+|.. .|.+++++.+...+++|+ .+.+++|+..+.+++.++.. ..+.+..|-|.+++++
T Consensus 355 ~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~~Iv 428 (888)
T KOG0306|consen 355 GKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVPGDRYIV 428 (888)
T ss_pred CCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecCCCceEE
Confidence 111 123456655 899999998866665554 56899999999999999974 3788999999999999
Q ss_pred EEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCC
Q 002196 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (954)
Q Consensus 659 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (954)
+|...|.+.++|+.+. .++...+.|...++.+. ..+|
T Consensus 429 ~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~------------------------------------------~~pD 465 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASA-SLVETIRAHDGAIWSIS------------------------------------------LSPD 465 (888)
T ss_pred EeccCCceEEEEeehh-hhhhhhhccccceeeee------------------------------------------ecCC
Confidence 9999999999999998 78888888888877652 3467
Q ss_pred CcccccccccccccccccccccC--CCceeEEecCC---CCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCC
Q 002196 739 VKPKIADEAVEKSRIWKLTEITE--PSQCRSLRLPD---NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST 813 (954)
Q Consensus 739 ~~~lvs~~~d~~i~iw~~~~~~~--~~~~~~~~~~~---~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~ 813 (954)
+..+++++.|.+|++|+..-... ..+.+.+.+.. -.-...|.++.+||||++|+++--|.++++|-+++-.+
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--- 542 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--- 542 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---
Confidence 88999999999999999864332 11111111111 01356899999999999999999999999997664221
Q ss_pred CcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEe
Q 002196 814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAF 892 (954)
Q Consensus 814 g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 892 (954)
...+.| |.-+|.|+..|||++++++|+ |.+|+||-++-|.|.+.+-+|.+.|.++.|
T Consensus 543 --------------------flsLYG--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 543 --------------------FLSLYG--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred --------------------eeeecc--cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 112344 999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 893 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 893 sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
-| ...++.+++.|+.|+-||-..-++++.+.+|...|++++.+|+|.+++|+|.|.+||+
T Consensus 601 ~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 601 LP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 99 8999999999999999999999999999999999999999999999999999999986
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=400.48 Aligned_cols=530 Identities=15% Similarity=0.205 Sum_probs=421.1
Q ss_pred ccceeeeeeCCCCCcceeecCCCC-------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeee
Q 002196 322 SVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV 394 (954)
Q Consensus 322 ~~~i~~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~ 394 (954)
...|.+++.||+|..+.+....+. ....++.+.-..+|.|+.|||+|+ ++|+|. .+.+.||.......-..
T Consensus 55 ~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~ 132 (893)
T KOG0291|consen 55 RYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEF 132 (893)
T ss_pred CCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhccc
Confidence 457889999999998777665532 345566677789999999999999 555553 46799999766433111
Q ss_pred eeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC
Q 002196 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474 (954)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 474 (954)
.++ .....+.+|-..|+++.||.|.++|++|+.|-++++|.++..+.+.. ..+.+|.+.|.++-|..+
T Consensus 133 ~pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~ 200 (893)
T KOG0291|consen 133 NPF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGAN 200 (893)
T ss_pred Ccc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccC
Confidence 111 13345788999999999999999999999999999999988776433 368899999999999998
Q ss_pred CCceEEEEEcCCCeEEEEECCC-----------------------Cce-----------EEEeccCCCCeEEEeeeccCC
Q 002196 475 NKQLSVVTCGEDRVIKVWDAVT-----------------------GTK-----------QYIFEGHESPVYSICPHHKEN 520 (954)
Q Consensus 475 ~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~-----------~~~~~~~~~~v~~~~~~~~~~ 520 (954)
.. -+++.+.||.+.+|.... ++. ..-+......|++.+|++..
T Consensus 201 ~~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t- 277 (893)
T KOG0291|consen 201 SL--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT- 277 (893)
T ss_pred cc--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-
Confidence 88 589999999999997651 111 01122234678999998876
Q ss_pred ccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCC
Q 002196 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600 (954)
Q Consensus 521 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 600 (954)
..|++|-..|...+|.+.....+..+.....+|..++|+..|.+|+.++. .-+.+.+|+..+...+.+.++|-. .
T Consensus 278 -~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~ 352 (893)
T KOG0291|consen 278 -NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-R 352 (893)
T ss_pred -eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-c
Confidence 68999999999999999998888888888889999999999999999874 245699999999999999999877 8
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEE
Q 002196 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 680 (954)
Q Consensus 601 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 680 (954)
+.+++++|||+++++|++||+|+|||..++-++.++..| ...|+.+.|+..|+.+++++-||+|+.||+... +..++
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRT 429 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRT 429 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeee
Confidence 999999999999999999999999999999999999976 678999999999999999999999999999887 77777
Q ss_pred ecccccc-ceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccc-ccccccccc
Q 002196 681 VESRTFD-ASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE-KSRIWKLTE 758 (954)
Q Consensus 681 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~-~i~iw~~~~ 758 (954)
+...... ...+ ..-+.|..+.+|+.|. .|.+|++++
T Consensus 430 ft~P~p~Qfscv------------------------------------------avD~sGelV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 430 FTSPEPIQFSCV------------------------------------------AVDPSGELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred ecCCCceeeeEE------------------------------------------EEcCCCCEEEeeccceEEEEEEEeec
Confidence 7654321 1111 0113466777777776 799999986
Q ss_pred ccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCC
Q 002196 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (954)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~ 838 (954)
+... --..||.++|.+++|+|+|..|++++-|.+|++|++-.. .++.-. ++
T Consensus 468 Gqll-------DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s--------------------~~~vEt--l~ 518 (893)
T KOG0291|consen 468 GQLL-------DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS--------------------SGTVET--LE 518 (893)
T ss_pred Ceee-------ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc--------------------Cceeee--Ee
Confidence 3221 122579999999999999999999999999999986421 111111 11
Q ss_pred CCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCC--------------------CCCeeEEEecCCCC
Q 002196 839 DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP--------------------PPAATFLAFHPQDN 897 (954)
Q Consensus 839 ~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h--------------------~~~v~~l~~sp~d~ 897 (954)
+...+..++|+|||+.||++. ||.|.+||++.+..+..+.+. ....+.+++|+ ||
T Consensus 519 ---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG 594 (893)
T KOG0291|consen 519 ---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DG 594 (893)
T ss_pred ---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CC
Confidence 677899999999999999999 999999999877666544431 23589999999 99
Q ss_pred ceEEEEecCccEEEEeccccceEEEecC----------------------------------------------------
Q 002196 898 NIIAIGMEDSSIQIYNVRVDEVKTKLKG---------------------------------------------------- 925 (954)
Q Consensus 898 ~~lasgs~dg~i~iwd~~~~~~~~~~~~---------------------------------------------------- 925 (954)
..|++|+..+.|+||++.++-+++++.-
T Consensus 595 ~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlss 674 (893)
T KOG0291|consen 595 KCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSS 674 (893)
T ss_pred CEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccc
Confidence 9999999999999999987654443310
Q ss_pred ----CccceeEEEEecCCCeEEEecCCcce
Q 002196 926 ----HQKRITGLAFSNTLNVLVSSGADSQV 951 (954)
Q Consensus 926 ----h~~~V~~l~~s~dg~~l~s~s~Dg~I 951 (954)
..-.|.++.|||.|+-+|.++..|..
T Consensus 675 Rr~rpeIrv~sv~fsPtgraFAaatTEGl~ 704 (893)
T KOG0291|consen 675 RRFRPEIRVTSVQFSPTGRAFAAATTEGLL 704 (893)
T ss_pred cccCceEEEEEEEECCCcCeeeeecccceE
Confidence 01147899999999999999988843
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-50 Score=390.84 Aligned_cols=364 Identities=19% Similarity=0.300 Sum_probs=300.7
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
++...+.+|.++|.++.|+|++ ..|++|+.|.++++||+.+..+..+.+.|.+.|.|++|+|||+.|++++.++.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g--~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~--- 180 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTG--SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS--- 180 (480)
T ss_pred eeccccCCCCCcEEEEEecCCC--ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCe---
Confidence 3556788999999999999855 89999999999999999999999999999999999999999999999987654
Q ss_pred EEEEEeCCCCeEE-EEEecCCCCCeEEEEEeC-----CCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 578 YLVEWNESEGAVK-RTYHGLGKRSVGVVQFDT-----TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 578 ~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
|++||..+|+++ +.+.+|.. .|.+++|.| ..+++++++.||.|+|||+..+.++..+.+| ...|+|+.|-
T Consensus 181 -I~lwdpktg~~~g~~l~gH~K-~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwG 256 (480)
T KOG0271|consen 181 -IRLWDPKTGQQIGRALRGHKK-WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWG 256 (480)
T ss_pred -EEEecCCCCCcccccccCccc-ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEc
Confidence 999999998654 66888877 999999975 5679999999999999999999999999877 6799999997
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (954)
-+| +|++|+.|++|++|+...| .+.+.+++|...|..++.+.. ...+ .-+|.+
T Consensus 257 G~g-liySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTd-------------------y~LR------tgaf~~ 309 (480)
T KOG0271|consen 257 GEG-LIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTD-------------------YVLR------TGAFDH 309 (480)
T ss_pred CCc-eEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccch-------------------hhhh------cccccc
Confidence 665 9999999999999999998 899999999999887643311 1100 001111
Q ss_pred CCCCCCCCcccccccccc--cccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCC
Q 002196 732 DSRNFTDVKPKIADEAVE--KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE 809 (954)
Q Consensus 732 ~~~~~~~~~~lvs~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~ 809 (954)
.+... -+.+... .+.-|+ .+.-..+.+++++++|.++.+|+-.
T Consensus 310 t~~~~------~~~se~~~~Al~rY~--------------------------~~~~~~~erlVSgsDd~tlflW~p~--- 354 (480)
T KOG0271|consen 310 TGRKP------KSFSEEQKKALERYE--------------------------AVLKDSGERLVSGSDDFTLFLWNPF--- 354 (480)
T ss_pred ccccC------CChHHHHHHHHHHHH--------------------------HhhccCcceeEEecCCceEEEeccc---
Confidence 11000 0000000 000000 1112345789999999999999632
Q ss_pred CCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCee
Q 002196 810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT 888 (954)
Q Consensus 810 ~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~ 888 (954)
++.+++. ...+ |..-|..+.||||++++|+++ |..|++||..+|+.+.+|+||-+.|.
T Consensus 355 ------------------~~kkpi~-rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 355 ------------------KSKKPIT-RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred ------------------ccccchh-hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence 2222322 2344 999999999999999999999 99999999999999999999999999
Q ss_pred EEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceecC
Q 002196 889 FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 889 ~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i~ 954 (954)
.++||. |.++|++||.|.++++||+++.++...+.||.++|.++.|||||+.+++|+.|+.+|++
T Consensus 414 qvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 414 QVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred EEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999 99999999999999999999999999999999999999999999999999999999985
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-50 Score=387.42 Aligned_cols=325 Identities=22% Similarity=0.348 Sum_probs=289.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
+|.++|.|++|+|+|+ .||+|+.|.++++||+.+.....+ .++|...|.|++|||||+.|
T Consensus 113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchh
Confidence 4999999999999999 789999999999999999877664 78999999999999999999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec-----CCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 508 (954)
|+|+.||+|++||.++|+++.. .+.+|...|++++|.| ..+ .|++++.||+|+|||+..+.++..+.+|+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999987653 6899999999999976 344 699999999999999999999999999999
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEEC-----------CCCC-------------
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-----------ADGA------------- 564 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------~~g~------------- 564 (954)
+|+|++|-.. .++++||.|++|++|+...+.....+.+|.+.|+.++.+ |.++
T Consensus 249 ~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 9999998543 499999999999999999888888999999999998877 2233
Q ss_pred ------------EEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 565 ------------RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 565 ------------~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
.+++++.| .++.+|+.... +++..+.+|.. .|+.+.|+||++++++++-|..|++||.++|+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd----~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDD----FTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHHHhhccCcceeEEecCC----ceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 48888754 45999997654 57888889887 89999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCC
Q 002196 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (954)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 711 (954)
.+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+. ++...+.
T Consensus 401 ~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLp----------------------------- 448 (480)
T KOG0271|consen 401 FLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLP----------------------------- 448 (480)
T ss_pred hhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCC-----------------------------
Confidence 99999976 779999999999999999999999999999876 3332222
Q ss_pred ccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceE
Q 002196 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 791 (954)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 791 (954)
+|...|.++.|+|||.++
T Consensus 449 --------------------------------------------------------------Gh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 449 --------------------------------------------------------------GHADEVFAVDWSPDGQRV 466 (480)
T ss_pred --------------------------------------------------------------CCCceEEEEEecCCCcee
Confidence 377789999999999999
Q ss_pred EEeecCCeEEEee
Q 002196 792 LALASNAVHKLWK 804 (954)
Q Consensus 792 ~~~~~dg~v~lw~ 804 (954)
++++.|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999994
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-46 Score=376.87 Aligned_cols=510 Identities=16% Similarity=0.237 Sum_probs=395.9
Q ss_pred EEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCE
Q 002196 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI 441 (954)
Q Consensus 362 ~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 441 (954)
+.-.|.|..++.+.+ ..|.+-++++..... ++.+|..+++-..|||.|-|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 344566776776543 467788887765433 37899999999999999999999999999
Q ss_pred EEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEE-cCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCC
Q 002196 442 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520 (954)
Q Consensus 442 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 520 (954)
|||||....+.+.+ .+++.-.++|..++|+.|++++ +++| +.++-.+++-+++|..+..+.+|...|+++.|-|...
T Consensus 83 vRIWdtt~~~hiLK-nef~v~aG~I~Di~Wd~ds~RI-~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 83 VRIWDTTQKEHILK-NEFQVLAGPIKDISWDFDSKRI-AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEEEeccCcceeee-eeeeecccccccceeCCCCcEE-EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc
Confidence 99999876443322 2566778999999999999973 4443 3343344444457888999999999999999998876
Q ss_pred ccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe---cCC
Q 002196 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH---GLG 597 (954)
Q Consensus 521 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~~ 597 (954)
-+++||++|++|.+|+-.-.+-...+..|..-|+++.|+|||.++++++.|+. +.+||-.+|+.+..+. +|.
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk----i~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK----IYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc----EEEEcCCCccEEEEecCCCCcc
Confidence 78999999999999975555555556667779999999999999999998665 9999999999999998 666
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCC-CCcceEEECCCCCEEEEEeCCCcEEEEEccCCCe
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL-QASPCIRFNKEGILLAVSTNDNGIKILANADGIR 676 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 676 (954)
+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... .....+.|- +..|++.+.+|.|.+++...+ .
T Consensus 236 G-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~ 311 (603)
T KOG0318|consen 236 G-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-S 311 (603)
T ss_pred c-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-C
Confidence 6 9999999999999999999999999999999999998765321 223345564 668889999999999999999 5
Q ss_pred eEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 002196 677 LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKL 756 (954)
Q Consensus 677 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~ 756 (954)
..+.+.+|...++.+.. +++++.+.+++.||.|.-|+.
T Consensus 312 ~~~~i~GHnK~ITaLtv------------------------------------------~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTV------------------------------------------SPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred hhheecccccceeEEEE------------------------------------------cCCCCEEEeeccCceEEEEec
Confidence 99999999999887633 355789999999999999998
Q ss_pred ccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCC----------Cccc-CCCCcccc
Q 002196 757 TEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST----------GKAT-TNQAPQLW 825 (954)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~----------g~~~-~~~~i~l~ 825 (954)
...... ++...+|...|.+++.+..+. +++.+-|.++++-++........ +... .+..+.+.
T Consensus 350 ~~g~~~------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 350 GSGTSD------RLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred CCcccc------ccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 753222 233456999999999888776 77888888999987754422211 1111 11111111
Q ss_pred CCCCcccccccCC---CCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccE--EEeeCCCCCCeeEEEecCCCCce
Q 002196 826 QPPSGILMTNDIS---DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MTTFMPPPPAATFLAFHPQDNNI 899 (954)
Q Consensus 826 ~~~~~~~~~~~~~---~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~d~~~ 899 (954)
-..++..+..... ...-.....++|++|+++.+|+|+ |++|+||.+..+.. ...+..|.++|++++||| |+.+
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~y 501 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAY 501 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcE
Confidence 1111111110000 001345678999999999999999 99999999986553 334567999999999999 9999
Q ss_pred EEEEecCccEEEEeccccceEE-EecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 900 IAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 900 lasgs~dg~i~iwd~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
||+|...+.|-+||+.+.+... .+.-|.+.|.+|+|||+.+++||||-|.+|.|
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence 9999999999999999988744 34459999999999999999999999999875
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-44 Score=372.23 Aligned_cols=486 Identities=15% Similarity=0.244 Sum_probs=371.9
Q ss_pred CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEE
Q 002196 367 VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYT 446 (954)
Q Consensus 367 ~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd 446 (954)
.|+++. ++....|.+||+++|+..... ........|+|++-+||.-+||+|..||.|+||+
T Consensus 33 ~Gr~va--~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~ 93 (888)
T KOG0306|consen 33 KGRAVA--VSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFS 93 (888)
T ss_pred CCcEEE--EeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEeec
Confidence 477433 334457999999999554320 0123346899999999999999999999999999
Q ss_pred eeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEE
Q 002196 447 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526 (954)
Q Consensus 447 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 526 (954)
..++.... ++.+|...|+++.|...|. .|++||.|+.|.+||+-...-...+.+|...|+..-|.... .++++
T Consensus 94 ~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lvS 166 (888)
T KOG0306|consen 94 LESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLVS 166 (888)
T ss_pred cCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEEE
Confidence 99875444 7899999999999999999 69999999999999999888899999999999998876533 79999
Q ss_pred EecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-------e-----EEEEEe
Q 002196 527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-------A-----VKRTYH 594 (954)
Q Consensus 527 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-------~-----~~~~~~ 594 (954)
.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.+.. +.+|++... . ..-++.
T Consensus 167 ~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse----~~v~~L~~~~D~~~~~~~~s~~~~G~~~ 240 (888)
T KOG0306|consen 167 VSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSE----LKVWELAFEDDEKETNRYISTKLRGTFI 240 (888)
T ss_pred eccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCc----eEEEEeecccccccccccceeeccceee
Confidence 99999999999999999999999999999999987 67777765443 899988210 0 000000
Q ss_pred cC-CC---------------------------------------------------------------------------
Q 002196 595 GL-GK--------------------------------------------------------------------------- 598 (954)
Q Consensus 595 ~~-~~--------------------------------------------------------------------------- 598 (954)
.. .+
T Consensus 241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~ 320 (888)
T KOG0306|consen 241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS 320 (888)
T ss_pred eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence 00 00
Q ss_pred CCeEEEEEeCCCC---EEEEEECCCeEEEEECCC-Cc------eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEE
Q 002196 599 RSVGVVQFDTTKN---RFLAAGDEFMIKFWDMDN-VN------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (954)
Q Consensus 599 ~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~-~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 668 (954)
..+.++.+.|.++ .++. -.++.+..|.+.. +. .+..+...+|...|.+++++.+...+++|+ .+.+++
T Consensus 321 ~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Siki 398 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKI 398 (888)
T ss_pred hheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEE
Confidence 1233344444332 1222 3344555555543 11 122344445677899999999988887765 569999
Q ss_pred EEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccc
Q 002196 669 LANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV 748 (954)
Q Consensus 669 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d 748 (954)
|+..+. ++++++... .+. ...+.|.+++++.|...
T Consensus 399 Wn~~t~-kciRTi~~~--y~l------------------------------------------~~~Fvpgd~~Iv~G~k~ 433 (888)
T KOG0306|consen 399 WNRDTL-KCIRTITCG--YIL------------------------------------------ASKFVPGDRYIVLGTKN 433 (888)
T ss_pred EEccCc-ceeEEeccc--cEE------------------------------------------EEEecCCCceEEEeccC
Confidence 999988 777777533 111 12456678899999999
Q ss_pred ccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCC
Q 002196 749 EKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPP 828 (954)
Q Consensus 749 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~ 828 (954)
|.+.+||+.....-... ..|.+.+.+++.+||++.+++++.|.+|++||+....- ..|. +-++..+.
T Consensus 434 Gel~vfdlaS~~l~Eti-------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt-----~~k~lsl~ 500 (888)
T KOG0306|consen 434 GELQVFDLASASLVETI-------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGT-----QKKVLSLK 500 (888)
T ss_pred CceEEEEeehhhhhhhh-------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcc-----cceeeeec
Confidence 99999999753322221 24999999999999999999999999999999763211 0000 00001111
Q ss_pred CcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCc
Q 002196 829 SGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS 907 (954)
Q Consensus 829 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg 907 (954)
..+. +. -...|.|+.+||||++||++- |.+|+||-+++.+....+-||.-+|.||..|| |+.+++|||.|+
T Consensus 501 ~~rt----Le---l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADK 572 (888)
T KOG0306|consen 501 HTRT----LE---LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADK 572 (888)
T ss_pred cceE----Ee---ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCC
Confidence 1111 11 457899999999999999998 99999999999999999999999999999999 999999999999
Q ss_pred cEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCccee
Q 002196 908 SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 908 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
+|+||-++=|.|...+.+|.+.|.++.|-|+...++|+|.|+.||
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence 999999999999999999999999999999999999999999886
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-42 Score=343.85 Aligned_cols=315 Identities=19% Similarity=0.315 Sum_probs=264.3
Q ss_pred CCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
.+...++.+.|..+|.+++|+|-..-++++|+.|-+.++|++.......+.. .++..+...-. .-...+..|+++
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~~~~--~s~~~nkdVT~L 241 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIREGG--KSVPSNKDVTSL 241 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhhhhc--ccCCccCCcceE
Confidence 4556677788999999999999887789999999999999987521111000 00000000000 001134789999
Q ss_pred EEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 425 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
+|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 999999999999999999999987643 44 6888999999999999999 79999999999999999999999999
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
-|..+-.++.|-.. ..+++++.|+.|+++.+....+...+.+|.++|.++.|+|.|.+|++++.|+ ++++|..
T Consensus 316 ~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~----TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG----TLKIWSM 388 (524)
T ss_pred eccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC----eeEeeec
Confidence 99988677777543 4799999999999999999999999999999999999999999999998754 5999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEeCCC---------CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC
Q 002196 585 SEGAVKRTYHGLGKRSVGVVQFDTTK---------NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (954)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (954)
........+..|.. .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|+|+|+
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCCCc
Confidence 99999999999987 89999999975 47899999999999999999999999866 67999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEe
Q 002196 656 LLAVSTNDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 656 ~l~s~~~dg~i~iwd~~~~~~~~~~~ 681 (954)
++|+|+.||.|.+|+..++ ++.+..
T Consensus 466 ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred EEEecCCCCeeEeccccch-heeEee
Confidence 9999999999999999888 444443
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-42 Score=336.71 Aligned_cols=284 Identities=18% Similarity=0.246 Sum_probs=265.8
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC--C
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--G 430 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 430 (954)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+.+ +.+|...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 34567999999999999 899999999999999999877664 8899999999999996 6
Q ss_pred CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 431 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
..||+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876666 7899999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
.+++|++++ .+++||+.|..-++||++++.++..+.+|..+|.+++|+|+|..|++|+.|+ +++|||++....+
T Consensus 307 ~~iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn----t~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN----TCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC----cEEEeeecccccc
Confidence 999998876 7999999999999999999999999999999999999999999999998654 5999999999999
Q ss_pred EEEecCCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 591 RTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
.++.+|.+ -|..+.|+| .|.+|++++.|++++||...+..+++++.+| .+.|.++.+++|++.+++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 6789999999999999999999999999977 6689999999999999999999999999
Q ss_pred E
Q 002196 670 A 670 (954)
Q Consensus 670 d 670 (954)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-42 Score=334.71 Aligned_cols=285 Identities=19% Similarity=0.283 Sum_probs=260.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
+.+.+|..+.||+|++.||||+.+|.++||+..+...+. ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467899999999999999999999999999999886555 89999999999999998422269999999999999999
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
+..++..+.+|...|..++|+|++ ++|.|++.|.+-++||+++........+|...|.+++|.+||..+++|+.|.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~-- 325 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS-- 325 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc--
Confidence 999999999999999999999877 8999999999999999999999999999999999999999999999998754
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC-CC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EG 654 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 654 (954)
.-++||+++|+++..+.+|.. .|.++.|+|+|..+++||.|++++|||++....+.++..| ..-|+.|.|+| .|
T Consensus 326 --~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 326 --LGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEG 400 (459)
T ss_pred --hhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccCC
Confidence 478999999999999999887 9999999999999999999999999999999999999877 66899999999 88
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCC
Q 002196 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (954)
Q Consensus 655 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (954)
.+|++++.|++++||...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998777 55555543
Q ss_pred CCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 735 ~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
|.+.|.++++++|++.+++++-|.++++|.
T Consensus 429 ----------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 677888899999999999999999999984
No 16
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=337.86 Aligned_cols=496 Identities=14% Similarity=0.173 Sum_probs=362.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEEE--cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
+..+++|++||++|+ ++|+|- ..-.++||++.....+.+ +.+|.-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 677999999999999 778885 445799999988776654 6789999999999999999
Q ss_pred EEEEEcC--CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE---------
Q 002196 433 FGVAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 501 (954)
Q Consensus 433 l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------- 501 (954)
+++.+.. -.|.+||++.+.... -..-...|..++|+.||. |++|.+. ..|++|.+..++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeeee-eeEEEEEeeccccccCCccccchh
Confidence 9987764 467888876543222 123456799999999999 6777765 699999887655210
Q ss_pred ----Ee------------------------ccC-----------------CCCeEEEeeeccCCccEEEEEecCCeEEEE
Q 002196 502 ----IF------------------------EGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (954)
Q Consensus 502 ----~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 536 (954)
.+ +|| +...+||+++ . .++++|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~--r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S--RLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c--ceEEEeeccceeeec
Confidence 00 011 1112344443 2 689999999999999
Q ss_pred eCCCCCceeEeeCC------------------------CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE--
Q 002196 537 LYDNLGSRVDYDAP------------------------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK-- 590 (954)
Q Consensus 537 d~~~~~~~~~~~~~------------------------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~-- 590 (954)
+-.+.....++... -.....+.|++....|.+...|. .+++||++.-..+
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh----SlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH----SLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc----eEEEEeccccccccc
Confidence 86654322211100 01235678999888888887644 4999999875432
Q ss_pred -EEEecCCCCCeEEEEEeCC-----------CCEEEEEECCCeEEEEECCCCceeEE-------------Ee--------
Q 002196 591 -RTYHGLGKRSVGVVQFDTT-----------KNRFLAAGDEFMIKFWDMDNVNLLAS-------------ID-------- 637 (954)
Q Consensus 591 -~~~~~~~~~~i~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~~-------- 637 (954)
..+-.|.. .|..+.--|- ...+++++.|++|++||+..+.--.. ..
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 22223333 4444433221 23589999999999999875211000 00
Q ss_pred --------------cCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccc
Q 002196 638 --------------ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 703 (954)
Q Consensus 638 --------------~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 703 (954)
.-.....+.+++.+|+|++||+|..-|.++||++.+- +....+..|...|..+.....
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~p------- 512 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSFP------- 512 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecCc-------
Confidence 0012346889999999999999999999999999887 677778888888776533211
Q ss_pred cccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEE
Q 002196 704 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLI 783 (954)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 783 (954)
....+++++++.|.-|.+||.... ..+.....+|...|+++.
T Consensus 513 --------------------------------~~~~kLLASasrdRlIHV~Dv~rn------y~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 513 --------------------------------VLTNKLLASASRDRLIHVYDVKRN------YDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred --------------------------------hhhhHhhhhccCCceEEEEecccc------cchhhhhcccccceeEEE
Confidence 012478899999999999998632 222223356999999999
Q ss_pred EecCC--ceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEe
Q 002196 784 YTNSG--LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 861 (954)
Q Consensus 784 ~spdg--~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 861 (954)
|.-.| ..+++++.|+.+.+-.... . .+|...... ........++.+++.|..++++++
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk---~----------------~~g~~f~r~-t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQK---A----------------SSGRLFPRH-TQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhcc---c----------------cCceecccc-ccccccceEEEeeeCCCcceEEEE
Confidence 99988 7789999997775532110 0 111111100 000134678899999999999999
Q ss_pred c-CCeEEEEEcccccEEEeeCC---CCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEec
Q 002196 862 S-GGKISLFNMMTFKTMTTFMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (954)
Q Consensus 862 s-dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 937 (954)
+ |..|+|||+.+|+..+.|++ |.+....+...| .|.|||+...|+++.++|+-+|+|++++.||+..|+.+.|++
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 9 99999999999999999986 556788899999 999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCcceec
Q 002196 938 TLNVLVSSGADSQVRN 953 (954)
Q Consensus 938 dg~~l~s~s~Dg~I~i 953 (954)
|-+.|++++.||+|.|
T Consensus 694 DCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFV 709 (1080)
T ss_pred cchhheeecCCceEEE
Confidence 9999999999999976
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-38 Score=323.84 Aligned_cols=473 Identities=16% Similarity=0.265 Sum_probs=356.0
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
++..|.++.|||... .+.++-.+|.|.||+.++...+.. +.-..-+|.+..|-+..++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 788999999999999 566778899999999999887765 233567899999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~ 513 (954)
+|+.|..|+||+..+++.+. .+.+|.+.|.+++.+|... +++|+|.|-.|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 8999999999999999999 7999999999999999865 6888999999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCC--CEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
+|+|..+ +.+++++.|++|++|.+....+..++.+|...|+|+.|-+-| .+|++++. +.++++||..+..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999776 799999999999999999999999999999999999998755 58888875 5569999999999999
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
++.+|.. .|..++|+|.-..+++|++||+++||+..+.+...++... ...+.|++-.+.+..++.|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999988 8999999999999999999999999999998888888755 568999999998889999998887765 33
Q ss_pred cCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccc
Q 002196 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (954)
Q Consensus 672 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i 751 (954)
... .+...+.....-+++..... .+..+...+.. ....||..+- +
T Consensus 298 gre-eP~vsMd~~gKIiwa~~~ei--~~~~~ks~~~~-------------------------~ev~DgErL~-------L 342 (794)
T KOG0276|consen 298 GRE-EPAVSMDSNGKIIWAVHSEI--QAVNLKSVGAQ-------------------------KEVTDGERLP-------L 342 (794)
T ss_pred cCC-CCceeecCCccEEEEcCcee--eeeeceeccCc-------------------------ccccCCcccc-------c
Confidence 322 22222222221111110000 00000000000 0001111100 0
Q ss_pred cccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcc
Q 002196 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 831 (954)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~ 831 (954)
.+=++. ...-....++-||+|+ +++.+.||...||..- -|..
T Consensus 343 svKeLg----------------s~eiyPq~L~hsPNGr-fV~VcgdGEyiIyTal-----------------a~Rn---- 384 (794)
T KOG0276|consen 343 SVKELG----------------SVEIYPQTLAHSPNGR-FVVVCGDGEYIIYTAL-----------------ALRN---- 384 (794)
T ss_pred hhhhcc----------------ccccchHHhccCCCCc-EEEEecCccEEEEEee-----------------ehhh----
Confidence 000000 0112234567799998 5555667888887410 0100
Q ss_pred cccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEE
Q 002196 832 LMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ 910 (954)
Q Consensus 832 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~ 910 (954)
...+.-..+.|++|....|+-. ++.|+++ +.++..+.+..... +-.+ - +|.+|...+ ++.++
T Consensus 385 ---------K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i-~-gg~Llg~~s-s~~~~ 447 (794)
T KOG0276|consen 385 ---------KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGI-F-GGPLLGVRS-SDFLC 447 (794)
T ss_pred ---------cccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc---eeee-c-CCceEEEEe-CCeEE
Confidence 1345566789999977777665 8999999 67787777763222 2222 2 566776655 56799
Q ss_pred EEeccccceEEEecCCccceeEEEEecCCCeEEEecCCc--ceecC
Q 002196 911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS--QVRNN 954 (954)
Q Consensus 911 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg--~I~i~ 954 (954)
+||.+++++++++.-. ...+.|+.+|.+++.++.|. .+++|
T Consensus 448 fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 448 FYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEcccceEEEEEeec---cceeEEecCCCEEEEEecCceeEEEec
Confidence 9999999999998844 34689999999999998887 55554
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=295.92 Aligned_cols=291 Identities=16% Similarity=0.274 Sum_probs=261.3
Q ss_pred EEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 350 ~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
.++|. |...|.++.|++|.+ .+++++.||.+.|||.-+....+. +.-....|..++|+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 36666 999999999999999 679999999999999888766653 333568899999999
Q ss_pred CCCEEEEEEcCCEEEEEEeeCC--c-ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGG--D-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
.|+++|+|+-|....||++.+. + ..+....+.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999854 1 2233447899999999999999876 99999999999999999999999999
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
|.+.|.++.+.|. +++.+++|+-|+..++||++.+.....+.+|...|+++.|.|+|.-+++|+.|+ +.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc----eeEEEeec
Confidence 9999999999985 458999999999999999999999999999999999999999999999998654 59999999
Q ss_pred CCeEEEEEecC-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 586 EGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 586 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
..+.+..+... ...+|++++|+..|++|++|..|..+.+||.-.++.+..+.+| ...|.|+..+|||.-+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecchhH
Confidence 99988888643 2247899999999999999999999999999999999999877 66999999999999999999999
Q ss_pred cEEEEE
Q 002196 665 GIKILA 670 (954)
Q Consensus 665 ~i~iwd 670 (954)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-38 Score=335.17 Aligned_cols=275 Identities=17% Similarity=0.294 Sum_probs=240.6
Q ss_pred CCCCCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeee---eeEE---------EeccCCCcc
Q 002196 342 TDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK---SFKV---------WELGACSMP 408 (954)
Q Consensus 342 ~~~~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~---~~~~---------~~~~~~~~~ 408 (954)
.+.+|..++.++. ....++|+.|++|+. ++|.|..|..|++|.+...+....+ .+.. -++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 5667788888887 457899999999999 9999999999999999864322110 0000 111122222
Q ss_pred ccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe
Q 002196 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (954)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~ 488 (954)
.....+.+|+++|..+.|+|+.++|++++.|+++|+|.+.+..++- .+.||..+|+++.|+|-|- +++|+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3334488999999999999999999999999999999999987665 7889999999999999998 7999999999
Q ss_pred EEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 489 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
.++|......+++.+.+|-+.|.|+.|+|+. .|+++||.|.+|++||+.++..+..+.+|..+|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 9999999999999999999999999999887 79999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
++.++ .|.+||+.++..+..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..
T Consensus 595 g~ed~----~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDEDG----LIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCC----cEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 98755 499999999999999999965 999999999999999999999999999865
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-38 Score=291.69 Aligned_cols=297 Identities=21% Similarity=0.290 Sum_probs=251.9
Q ss_pred eEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 349 ~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+..+++ |++.|+.++..+.+..++++++.|.++.+|++.......-. ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 344555 99999999999998889999999999999998765322211 112378999999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC-
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH- 506 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 506 (954)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .+++|+.|++|++||+.. .+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCC
Confidence 999999999999999999999997666 7899999999999999999 599999999999999654 445555433
Q ss_pred -CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 507 -ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 507 -~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
.+.|.+++|+|+....++++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.++ .+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg----~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG----EAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc----eEEEEEcc
Confidence 7899999999997668999999999999999999998889999999999999999999999987654 49999999
Q ss_pred CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCC-------CCCcceEEECCCCCEEE
Q 002196 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-------LQASPCIRFNKEGILLA 658 (954)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~ 658 (954)
.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++..+..+..... .....+++|++||+.|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988776644 89999999986555554 455699999999988887754321 22355789999999999
Q ss_pred EEeCCCcEEEEEcc
Q 002196 659 VSTNDNGIKILANA 672 (954)
Q Consensus 659 s~~~dg~i~iwd~~ 672 (954)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999874
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=290.48 Aligned_cols=249 Identities=17% Similarity=0.222 Sum_probs=229.1
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
++++|.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++++|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999998866554 5666778999999999999 79999999999999
Q ss_pred ECCCC------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECC-CCCE
Q 002196 493 DAVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR 565 (954)
Q Consensus 493 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 565 (954)
++.+. +..+.+.+|.+.+.++.|..+ ..|+|+|.|.++.+||++++.....+.+|.+.|.+++++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 355679999999999999763 5899999999999999999999999999999999999999 9999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
+++++-|+. .++||++.+..++.|.+|.. .|+++.|.|+|.-+++|++|++.++||++....+..+........|
T Consensus 202 FvSg~cD~~----aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDKS----AKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEecccccc----eeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999987554 89999999999999999988 9999999999999999999999999999999999999877777789
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++++||..|++|.+|..|..+.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999998666
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.9e-37 Score=279.57 Aligned_cols=295 Identities=14% Similarity=0.226 Sum_probs=251.1
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe--EEEEEecCCCC
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKR 599 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 599 (954)
-+|++++.|.+|++|...++.+...+......|+.+.+.|+++.|++++. ..|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-----qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-----QHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-----CeeEEEEccCCCCCceeEEeccCC-
Confidence 58999999999999999999999999998999999999999999999873 459999999874 6899999977
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEE
Q 002196 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 679 (954)
.|.++.|..+|+++++||+||+++|||++.-.+.+.++. ..+|+++..+|+...|++|..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999999666666643 468999999999999999999999999999765 1111
Q ss_pred EeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccc
Q 002196 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (954)
Q Consensus 680 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~ 759 (954)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCC
Q 002196 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (954)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~ 839 (954)
.|. ....|+++...|||+.++++..-|...+|++-.... .+...-...++
T Consensus 163 ----------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~- 212 (311)
T KOG0315|consen 163 ----------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQ- 212 (311)
T ss_pred ----------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhee-
Confidence 011 235688999999999999999999999999764211 01111111133
Q ss_pred CCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccc-cEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEecccc
Q 002196 840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (954)
Q Consensus 840 ~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~ 917 (954)
+|+..+..+.+|||+++||+++ |.+++||++++. +.-..+.+|...+..++||. ||+||++|+.|+.+++|++..+
T Consensus 213 -ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 213 -AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence 3999999999999999999999 999999999987 66778899999999999999 9999999999999999999999
Q ss_pred ceEEEecCCccceeEEEEe
Q 002196 918 EVKTKLKGHQKRITGLAFS 936 (954)
Q Consensus 918 ~~~~~~~~h~~~V~~l~~s 936 (954)
+.+..+.+|-....+++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999998888777654
No 23
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-36 Score=312.39 Aligned_cols=502 Identities=12% Similarity=0.152 Sum_probs=356.2
Q ss_pred ccccccceeeeeeCCCCCcceeecCCCCCcceEEEe----------cCCCCeeEEEEcCCCCeEEEEEEc-CCeEEEEeC
Q 002196 318 VNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTL----------NQGSAVKSMDFHPVQQILLVVGTN-MGDVMLWEV 386 (954)
Q Consensus 318 v~~~~~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~----------~h~~~V~~~~~sp~g~~ll~~g~~-dg~i~iwd~ 386 (954)
|..+...+++++||++|+|+|++.-...|..-+..+ .|.-.|+|++|+|.+++++.+|+. |-.|.+||+
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dW 153 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDW 153 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhh
Confidence 334455788999999999999997555544333333 367799999999999977767765 567889998
Q ss_pred CCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeee------
Q 002196 387 GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE------ 460 (954)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 460 (954)
+....... ..-...|..++|+.||.|+++++. ..|++|.++.++..+....+.
T Consensus 154 r~N~~~as--------------------nkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~l 212 (1080)
T KOG1408|consen 154 RVNSSGAS--------------------NKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFL 212 (1080)
T ss_pred hhcccccc--------------------cccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhc
Confidence 76654432 223578999999999999999854 569999998765322100000
Q ss_pred ----------------------------cc-----------------cCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 461 ----------------------------AH-----------------VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 461 ----------------------------~h-----------------~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
|| +....|++.+ .+ ++++|+.+|.|++|+..
T Consensus 213 g~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r--~I~cgCa~g~vrlFnp~ 288 (1080)
T KOG1408|consen 213 GNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SR--LIACGCAKGMVRLFNPE 288 (1080)
T ss_pred cccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cc--eEEEeeccceeeecCcc
Confidence 11 1112334443 34 79999999999999987
Q ss_pred CCceEEEecc-C-------------------CC--CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce---eEeeCC
Q 002196 496 TGTKQYIFEG-H-------------------ES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAP 550 (954)
Q Consensus 496 ~~~~~~~~~~-~-------------------~~--~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~ 550 (954)
+-....++.. | .. .--+++..+++....+.+...|..+++||++..... ..+..|
T Consensus 289 tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyH 368 (1080)
T KOG1408|consen 289 TLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYH 368 (1080)
T ss_pred hhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeec
Confidence 6544433320 0 00 011233333333368999999999999999876543 233445
Q ss_pred CCceEEEEECC------------CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe------------------------
Q 002196 551 GHSSTMMAYSA------------DGARLFSCGTNKEGESYLVEWNESEGAVKRTYH------------------------ 594 (954)
Q Consensus 551 ~~~v~~~~~s~------------~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~------------------------ 594 (954)
...|+.+.--| .+ .+++++.|+ +|++||+..+.--..+.
T Consensus 369 S~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~----TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 369 SACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDG----TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred cceeeeeccccccccCcccccCCcc-ceeEecCCC----cEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 55555554433 22 367777644 59999987532100000
Q ss_pred ------------cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC---CCCEEEE
Q 002196 595 ------------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---EGILLAV 659 (954)
Q Consensus 595 ------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s 659 (954)
......+.+++.+|+|++|++|..-|.++||++..-+....+..| ...|.|+.|+. ..++||+
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH--esEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH--ESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc--cceeEEEeecCchhhhHhhhh
Confidence 011136889999999999999999999999999998888888876 66899999986 4578999
Q ss_pred EeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCC
Q 002196 660 STNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV 739 (954)
Q Consensus 660 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (954)
++.|..|+|+|+.....+++++.+|...|+.+.+... | -.
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~---------g-------------------------------ln 561 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN---------G-------------------------------LN 561 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeec---------C-------------------------------Cc
Confidence 9999999999999888999999999999887644321 0 12
Q ss_pred cccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCC
Q 002196 740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN 819 (954)
Q Consensus 740 ~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~ 819 (954)
..+++++.|..|.+-..+.......... -........+..++..|..+++++++.|..|+||++..+
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r--~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg----------- 628 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPR--HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG----------- 628 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccc--cccccccceEEEeeeCCCcceEEEEecccceEEEecccc-----------
Confidence 4567777777766544332111111110 001113466889999999999999999999999976643
Q ss_pred CCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCc
Q 002196 820 QAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898 (954)
Q Consensus 820 ~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~ 898 (954)
+.....-...+|.+....+...|.|-|+|+.. |.++.++|..+|+++.+..||...|+.+.|++ |.+
T Consensus 629 -----------Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n-DCk 696 (1080)
T KOG1408|consen 629 -----------KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN-DCK 696 (1080)
T ss_pred -----------ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-cch
Confidence 32222111233667888899999999999887 99999999999999999999999999999999 999
Q ss_pred eEEEEecCccEEEEeccc
Q 002196 899 IIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 899 ~lasgs~dg~i~iwd~~~ 916 (954)
+|++++.||.|.||.+..
T Consensus 697 HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeecCCceEEEEECch
Confidence 999999999999999863
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-36 Score=274.93 Aligned_cols=288 Identities=17% Similarity=0.269 Sum_probs=245.3
Q ss_pred CCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEe
Q 002196 368 QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTY 447 (954)
Q Consensus 368 g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~ 447 (954)
..-+|++++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++. ..|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 345899999999999999999998875 3445689999999999999999865 45999999
Q ss_pred eCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEE
Q 002196 448 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527 (954)
Q Consensus 448 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 527 (954)
.++... +..++.+|...|+++.|..+|+ ++++||.||+++|||++...+.+.++ |..+|++++.+|+. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998754 4558999999999999999999 89999999999999999977777776 77999999999877 689999
Q ss_pred ecCCeEEEEeCCCCCceeEeeCC-CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC------eEEEEEecCCCCC
Q 002196 528 ATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------AVKRTYHGLGKRS 600 (954)
Q Consensus 528 s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~ 600 (954)
..+|.|++||+....+...+... ...+.++...|||.+++.+.. .+..++|++-+. +++.+++.|.+ .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-e
Confidence 99999999999987665544333 348999999999999998764 345999998654 45667888877 7
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCC-ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEE
Q 002196 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (954)
Q Consensus 601 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 679 (954)
+..+.+||++++|++++.|.+++||+.++. +....+. +|...+..++||.||++|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888899999999999999999999999987 3334444 44678999999999999999999999999999999 7777
Q ss_pred Eeccccccce
Q 002196 680 TVESRTFDAS 689 (954)
Q Consensus 680 ~~~~~~~~v~ 689 (954)
...+|.....
T Consensus 295 qy~gh~K~~v 304 (311)
T KOG0315|consen 295 QYQGHHKAAV 304 (311)
T ss_pred ecCCcccccE
Confidence 7888766543
No 25
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-34 Score=301.17 Aligned_cols=542 Identities=15% Similarity=0.159 Sum_probs=339.3
Q ss_pred ceeecCCCCCcceEEEec-CCCCeeEEEEcCCCC--eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccc
Q 002196 337 QSSYSTDDLPKTVVMTLN-QGSAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413 (954)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~-h~~~V~~~~~sp~g~--~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (954)
++.+...+ ...+.++. |..+|+|+.|-|+.+ ..+++|+.||.|.+|.++.........
T Consensus 36 Iav~dp~k--~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~----------------- 96 (764)
T KOG1063|consen 36 IAVADPEK--ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT----------------- 96 (764)
T ss_pred EEEeCccc--ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------
Confidence 44444333 23444444 999999999998876 247899999999999998544443221
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee--ecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI--EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
+.+|...+.| ++..-....+...|+.+.+||.+..+ +.....+ ....--..|+++.++.+.++++.|+.+..|.+
T Consensus 97 ~~g~~~~~~c--v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 97 IQGHCKECVC--VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred ecCcceeEEE--EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE
Confidence 3455555554 44433333344789999999995544 1111112 21222345777778666657888888889999
Q ss_pred EECCCC--ceEEEeccCCCCeEEEeeeccCC-ccEEEEEecCCeEEEEeCCCCC-----------------cee------
Q 002196 492 WDAVTG--TKQYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLG-----------------SRV------ 545 (954)
Q Consensus 492 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~-----------------~~~------ 545 (954)
+.-..+ +.+..+.||.+.|.+++|...+. .-+++++|.|..||+|.+.-.. ...
T Consensus 174 ~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 174 YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 865544 45678899999999999976554 4688999999999999764322 000
Q ss_pred --------EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC--eEEEEEe----cCCCCCeEEEEEeCCCC
Q 002196 546 --------DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYH----GLGKRSVGVVQFDTTKN 611 (954)
Q Consensus 546 --------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~i~~~~~~~~~~ 611 (954)
.+.+|...|+++.|+|.+..|++++.|.+ +.+|...+. --+.... ++.........|+|+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks----miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS----MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheecccCcc----eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 12367789999999999999999988665 999977654 3332222 12223577888999999
Q ss_pred EEEEEECCCeEEEEECCC-CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccccccee
Q 002196 612 RFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 690 (954)
.+++-+..|..++|.... ..........+|...|..++|+|.|.+|++.+.|.+-|++-.-..+.....+...+-.-+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy- 408 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY- 408 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc-
Confidence 999999999999998322 233333333466889999999999999999999999999865422222222211111000
Q ss_pred cchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEec
Q 002196 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (954)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~ 770 (954)
++.. ..+....-.+++|..+.-+|+|+.+.. ....+..
T Consensus 409 ----------Dl~c----------------------------~~~vn~~~~FVSgAdEKVlRvF~aPk~----fv~~l~~ 446 (764)
T KOG1063|consen 409 ----------DLTC----------------------------LSFVNEDLQFVSGADEKVLRVFEAPKS----FVKSLMA 446 (764)
T ss_pred ----------ccee----------------------------eehccCCceeeecccceeeeeecCcHH----HHHHHHH
Confidence 0000 011111223445555555555554310 0000000
Q ss_pred CCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCCCCCCCCccc--CCCCccccCCCCcc-cc-------cccCCC
Q 002196 771 PDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKAT--TNQAPQLWQPPSGI-LM-------TNDISD 839 (954)
Q Consensus 771 ~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~--~~~~i~l~~~~~~~-~~-------~~~~~~ 839 (954)
..+ ..-...+-.|+|..+-+-+ +++.+..-+.+++....+-... ...-..+..+.... +. ...+
T Consensus 447 -i~g--~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL-- 521 (764)
T KOG1063|consen 447 -ICG--KCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL-- 521 (764)
T ss_pred -HhC--ccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh--
Confidence 000 0000011122222111111 0100000000000000000000 00000111111110 00 1112
Q ss_pred CCCCCCccEEEeccCCCeEEEec-C-----CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEe
Q 002196 840 TNPEDAVPCFALSKNDSYVMSAS-G-----GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (954)
Q Consensus 840 ~~~~~~v~~~~~s~dg~~la~~s-d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd 913 (954)
.+|...|++++.||+|+++|+++ . ..|++|+..+...+..+.+|+-.|+.|+||| ||++|++++.|.++.+|.
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeee
Confidence 34999999999999999999997 2 3499999999999999999999999999999 999999999999999999
Q ss_pred ccccce----EEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 914 VRVDEV----KTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 914 ~~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
...+.. ....+.|+.-|++..|+||++++||+|.|++|+|
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 865422 3347789999999999999999999999999986
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.6e-36 Score=296.68 Aligned_cols=317 Identities=18% Similarity=0.239 Sum_probs=274.0
Q ss_pred cccccceeeeeeCCCCC-cceeecCCCCCc-----------ce-----------EEEecCCCCeeEEEEcCCCCeEEEEE
Q 002196 319 NNLSVNILPVAYTPQSL-GQSSYSTDDLPK-----------TV-----------VMTLNQGSAVKSMDFHPVQQILLVVG 375 (954)
Q Consensus 319 ~~~~~~i~~~~~s~~g~-~~~~~~~~~~~~-----------~~-----------~~~~~h~~~V~~~~~sp~g~~ll~~g 375 (954)
..|...|.+.+|.|-.. .+++++.+..-. .. .+.......|++++|+.+|. +||+|
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATG 253 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEe
Confidence 34556677899999877 667666554310 00 11122346899999999999 99999
Q ss_pred EcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceee
Q 002196 376 TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455 (954)
Q Consensus 376 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~ 455 (954)
+.||.++||+....... .+..|.++|.++.|+.+|+||++++.|+++.+||..++....
T Consensus 254 ~~~G~~riw~~~G~l~~--------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q- 312 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLIS--------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ- 312 (524)
T ss_pred ecCcEEEEEecCchhhh--------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence 99999999998765433 277899999999999999999999999999999999987665
Q ss_pred eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEE
Q 002196 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (954)
Q Consensus 456 ~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~i 535 (954)
.+.-|..+-..+.|-.+.. +++++.|+.|+++.+....++.++.+|.++|.++.|+|.+ .+|+++|.|+++++
T Consensus 313 --~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 313 --QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKI 385 (524)
T ss_pred --eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEe
Confidence 5666888878899987776 8999999999999999999999999999999999998876 89999999999999
Q ss_pred EeCCCCCceeEeeCCCCceEEEEECCCCC---------EEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEE
Q 002196 536 WLYDNLGSRVDYDAPGHSSTMMAYSADGA---------RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF 606 (954)
Q Consensus 536 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 606 (954)
|.+........+..|...|+.+.|+|+|. .+++++. +.++++||+..+.++..|..|.. +|++++|
T Consensus 386 Ws~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~gv~i~~f~kH~~-pVysvaf 460 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESGVPIHTLMKHQE-PVYSVAF 460 (524)
T ss_pred eecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCCceeEeeccCCC-ceEEEEe
Confidence 99988888888888999999999999653 5777776 44699999999999999999887 9999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 607 DTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 607 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
+|+|.++++|+.||.|.+|+.++++.++..... ..|..++|+.+|..|..+-.|+.+++.|+.
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~---~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT---GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeecCC---CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999999999654 458999999999999999999999998864
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.1e-35 Score=283.48 Aligned_cols=335 Identities=17% Similarity=0.247 Sum_probs=284.8
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEe
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 537 (954)
.|..|+..|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+.++ .+|+||+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEEEEE
Confidence 6889999999999999776 79999999999999999999999999999999999998665 8999999999999999
Q ss_pred CCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE
Q 002196 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
..++.....+......+.-+.|+|.+..|++|+.|+. +.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs----vWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS----VWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCc----EEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999888888767778899999999999999987665 99999999888899999877 899999999999999999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccc
Q 002196 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697 (954)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 697 (954)
.||+|++|+..++.++..+.... .....++.++..+..+..|+.++.+++-+..++ +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 99999999999999999987544 335688999999999999999999888766555 22211110
Q ss_pred cCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCcc
Q 002196 698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (954)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (954)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCe
Q 002196 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (954)
Q Consensus 778 ~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 857 (954)
.+..+... .. .....|.++.+|..-.+
T Consensus 274 ---------~~~~l~~~------------------------------------------~e--~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 274 ---------TVPELKPS------------------------------------------QE--ELDESVESIPSSSKLPL 300 (399)
T ss_pred ---------CCcccccc------------------------------------------ch--hhhhhhhhcccccccch
Confidence 00000000 00 01233444556666778
Q ss_pred EEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEe
Q 002196 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936 (954)
Q Consensus 858 la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 936 (954)
.|+|+ ||+|.|||+.....+..+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||..+|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 89999 9999999999888877777 888899999987 4688999999999999999999999999999999999999
Q ss_pred cCCCeEEEecCCcceec
Q 002196 937 NTLNVLVSSGADSQVRN 953 (954)
Q Consensus 937 ~dg~~l~s~s~Dg~I~i 953 (954)
|++++++|+|.|++.+|
T Consensus 378 ~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALV 394 (399)
T ss_pred CCCcEEEEecCCCeEEE
Confidence 99999999999999876
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=306.68 Aligned_cols=490 Identities=17% Similarity=0.247 Sum_probs=350.8
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
.+..|..++|+|... .+.++-.+|.|.+||.+-+.++.. +.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 456899999999999 667888999999999998887764 788999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 514 (954)
+|+.|-.|+||++++.+++. ++.||-+.|..+.|++.-. +++++|.|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987766 8999999999999999888 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCc-----------------------------eeEeeCCCCceEEEEECCCCCE
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGS-----------------------------RVDYDAPGHSSTMMAYSADGAR 565 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------------~~~~~~~~~~v~~~~~s~~g~~ 565 (954)
|+|.. ..++++|.|.+|++||+..... ...+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99987 5899999999999999752211 1134567778999999999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCe--EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCC
Q 002196 566 LFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
+++|+.|+ .|++|.+...+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|+|||+...+.++++... ..
T Consensus 221 iVSG~DDR----qVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--nd 293 (1202)
T KOG0292|consen 221 IVSGADDR----QVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--ND 293 (1202)
T ss_pred EEecCCcc----eeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CC
Confidence 99988654 49999876543 4556778877 8999999999999999999999999999999999999765 45
Q ss_pred CcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccc
Q 002196 644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723 (954)
Q Consensus 644 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (954)
....++.+|..++++.|- |+-+.+|.++.. ++...+.+
T Consensus 294 RFW~laahP~lNLfAAgH-DsGm~VFkleRE-rpa~~v~~---------------------------------------- 331 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGH-DSGMIVFKLERE-RPAYAVNG---------------------------------------- 331 (1202)
T ss_pred eEEEEEecCCcceeeeec-CCceEEEEEccc-CceEEEcC----------------------------------------
Confidence 789999999999998765 555667766533 12111111
Q ss_pred ccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEee--cCCeEE
Q 002196 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA--SNAVHK 801 (954)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~dg~v~ 801 (954)
+..+.. .|..|+-+|+.+.. ......++.+. ....++.++.|+|....++.++ ++|..-
T Consensus 332 ---------------n~LfYv--kd~~i~~~d~~t~~-d~~v~~lr~~g-~~~~~~~smsYNpae~~vlics~~~n~~y~ 392 (1202)
T KOG0292|consen 332 ---------------NGLFYV--KDRFIRSYDLRTQK-DTAVASLRRPG-TLWQPPRSLSYNPAENAVLICSNLDNGEYE 392 (1202)
T ss_pred ---------------CEEEEE--ccceEEeeeccccc-cceeEeccCCC-cccCCcceeeeccccCeEEEEeccCCCeEE
Confidence 111111 25778888887622 22222222221 1346788999999876555553 357777
Q ss_pred EeeccCCCCC-CCCc--ccCCCCccc---------cCCCCcccccccCCCC-----CCCCCccEEEeccCCCeEEEecCC
Q 002196 802 LWKWPRNERN-STGK--ATTNQAPQL---------WQPPSGILMTNDISDT-----NPEDAVPCFALSKNDSYVMSASGG 864 (954)
Q Consensus 802 lw~~~~~~~~-~~g~--~~~~~~i~l---------~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~la~~sdg 864 (954)
++.++..... .++. ....+.-.+ .+..+.......+... .....+..+-+.-.|.+|. .+..
T Consensus 393 L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll-~~~~ 471 (1202)
T KOG0292|consen 393 LVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLL-RSPD 471 (1202)
T ss_pred EEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEE-EcCC
Confidence 8877654111 1111 111111112 2221211111111100 0011233344444444333 3457
Q ss_pred eEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEE
Q 002196 865 KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944 (954)
Q Consensus 865 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 944 (954)
.|.+||++..+.+..++ ...|..+.||+ |..++|--+ ..+|.|.+.+ -+.+.++. ..-+|.+-+|..+|-+|.+
T Consensus 472 ~v~lfdvQq~~~~~si~--~s~vkyvvws~-dm~~vAll~-Kh~i~i~~kk-L~l~~sih-Etiriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 472 SVTLFDVQQKKKVGSIK--VSKVKYVVWSN-DMSRVALLS-KHTITIADKK-LELLCSIH-ETIRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred eEEEEEeecceEEEEEe--cCceeEEEEcC-ccchhhhcc-cceEEEEecc-hhheecch-heeEeeeceeccCceEEEE
Confidence 79999999888777775 66899999999 888777655 4578888743 33333333 2234666677777655555
Q ss_pred ec
Q 002196 945 SG 946 (954)
Q Consensus 945 ~s 946 (954)
..
T Consensus 546 T~ 547 (1202)
T KOG0292|consen 546 TL 547 (1202)
T ss_pred eh
Confidence 43
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-35 Score=273.54 Aligned_cols=252 Identities=18% Similarity=0.253 Sum_probs=216.5
Q ss_pred ccCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcce--eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 413 LSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
.+.+|++.|+.++..+. .+.+++++.|.++.+|++...... .....+.||...|..+..++||+ +.++++.|+++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~l 87 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGTL 87 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccceE
Confidence 47899999999999996 668899999999999998653211 11237899999999999999999 79999999999
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--CCceEEEEECCC--CCE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSAD--GAR 565 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~--g~~ 565 (954)
++||+.+|+..+.|.+|...|.+++|+++. ..+++|+.|.+|++|++... +....... ...|.++.|+|+ ...
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn--~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDN--RQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCC--ceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 999999999999999999999999999876 78999999999999998753 34333333 569999999998 567
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
|++++.|+ ++++||+++.+....+.+|.. .++.++++|||..+++|+.||.+.+||++.++.+..+.. ...|
T Consensus 165 Ivs~s~Dk----tvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v 236 (315)
T KOG0279|consen 165 IVSASWDK----TVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIV 236 (315)
T ss_pred EEEccCCc----eEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeE
Confidence 88887654 599999999999999999987 899999999999999999999999999999999888854 5689
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEE
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 679 (954)
.+++|+|+...|+.+. +..|+|||+.++ .++.
T Consensus 237 ~sl~fspnrywL~~at-~~sIkIwdl~~~-~~v~ 268 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAAT-ATSIKIWDLESK-AVVE 268 (315)
T ss_pred eeEEecCCceeEeecc-CCceEEEeccch-hhhh
Confidence 9999999987777665 446999999887 4443
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-36 Score=287.47 Aligned_cols=292 Identities=19% Similarity=0.316 Sum_probs=262.2
Q ss_pred cceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
....+..+|..+|+.+-|+|+-. +.++++.|++|++||..+|+.... +.+|++.|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 33444556999999999999988 889999999999999999987654 7899999999999
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 506 (954)
+..|++||+++.|-.+.+||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++.+|.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999863 233337889999999999999998 7999999999999999999999999999
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCC---------------CEEEEEEe
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---------------ARLFSCGT 571 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g---------------~~l~~~~~ 571 (954)
...|..+.++ .+|..+++++.|.++++|-+.+..+...+..|.++|.+++|.|.. .++.+++.
T Consensus 235 ~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 235 SEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred hHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 9999988876 555899999999999999999998889999999999999997632 36666665
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
+.+|++||+.+|.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||++++++...+..|.+ -++++.|+
T Consensus 313 ----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 313 ----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 44599999999999999999988 999999999999999999999999999999999999997744 79999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 002196 652 KEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~ 671 (954)
.+..++++|+-|..+++|.-
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999963
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=278.88 Aligned_cols=329 Identities=16% Similarity=0.199 Sum_probs=274.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+..|+..|.+++.+|+.+++++|+.|....+|++.++.... .+.+|...|+++.|+.||. +|+||+.+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 67899999999999999999999999999999999998555 7899999999999999999 899999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
..++.....+...-..+.-+.|+|.. ..|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+.++++..|+
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 99999988887667778889999866 7999999999999999999888888999999999999999999999998754
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC------CCCCC---
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQA--- 644 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~--- 644 (954)
+|++|++.+++++..+.........++.++..+..++.|+.++.+++-+..+|+.+...... .+...
T Consensus 213 ----ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 213 ----TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ----eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 59999999999999988766667788999999999999999999999998888887776521 01111
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccc
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (954)
|.++.|+..-.+.|+|+-||+|.|||+...
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 222223333344555555555555554322
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCC
Q 002196 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP 883 (954)
Q Consensus 805 ~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h 883 (954)
.+ .. .- .|...|+.+.|-+ ..+|++++ +|.|+.||..+|+++.++.||
T Consensus 319 ----~~----------------------R~--~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 319 ----TL----------------------RH--IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred ----hh----------------------he--ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 00 00 00 0667788888887 56777777 999999999999999999999
Q ss_pred CCCeeEEEecCCCCceEEEEecCccEEEEecc
Q 002196 884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 884 ~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~ 915 (954)
...|.+++++| +.++++|+|.|++.+||++.
T Consensus 368 ~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999999 99999999999999999875
No 32
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=297.22 Aligned_cols=530 Identities=12% Similarity=0.119 Sum_probs=381.2
Q ss_pred cceeeeeeCCCCCcceeecCCCC---CcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCcee-eeeee
Q 002196 323 VNILPVAYTPQSLGQSSYSTDDL---PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERI-AVKSF 397 (954)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~~---~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~-~~~~~ 397 (954)
..|.|++-..+-.++|++..=.. .+....+.. |...|.-+..- |. .+.++..++.+.||+..+++.. ..
T Consensus 77 ~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~a~v~~l~~f--Ge-~lia~d~~~~l~vw~~s~~~~e~~l--- 150 (910)
T KOG1539|consen 77 DKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHGAKVHLLLPF--GE-HLIAVDISNILFVWKTSSIQEELYL--- 150 (910)
T ss_pred CceEEEEecCceEEEecCcEEEEEEccceEEEEeccccceEEEEeee--cc-eEEEEEccCcEEEEEeccccccccc---
Confidence 34556655544444443322111 123333333 66666665443 44 4567788899999999885211 11
Q ss_pred EEEeccCCCccccccccCCCCCCeEEEEEccC--CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCC
Q 002196 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (954)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 475 (954)
+..++......|+++. +|. =+.++.|+.+|.+.+|++++++.+. ++.++...|+++.=+|-=
T Consensus 151 ------------~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~---~f~~~~s~IT~ieqsPaL 214 (910)
T KOG1539|consen 151 ------------QSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVY---TFQEFFSRITAIEQSPAL 214 (910)
T ss_pred ------------cceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEE---EecccccceeEeccCCcc
Confidence 1111222223377664 453 4578899999999999999998887 788899999999999987
Q ss_pred CceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-CCCCce
Q 002196 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSS 554 (954)
Q Consensus 476 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v 554 (954)
. +++.|..+|+|.+++++.++.+.+|+...+.|++++|..+++ ..+++|+..|.+.+||++..+...... .|.+.+
T Consensus 215 D--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~-p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv 291 (910)
T KOG1539|consen 215 D--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN-PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV 291 (910)
T ss_pred e--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC-eeEEeccCCceEEEEEcCCCeeeeeeeccccCCc
Confidence 7 899999999999999999999999995569999999987765 688888899999999999877665544 676789
Q ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC--eEEEEEecCCCCCeEEEEEe-CCCCEEEEEECCCeEEEEECCCCc
Q 002196 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 555 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
....|.|....+++.+.|. ...+.++|...| +.++.-.+|.. +..++.|. .+|.++.+++.|++++.+++....
T Consensus 292 ~~~~fl~~epVl~ta~~Dn--Slk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~ 368 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGADN--SLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISES 368 (910)
T ss_pred ccceecCCCceEeeccCCC--ceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence 9999999999999888764 445666776665 45566667766 88889887 678999999999999988865321
Q ss_pred eeEEE------e----------cCCCCCCcceEEECC-----CCCEEEEEeCCCcEEEEEccCCCeeEEEecccccccee
Q 002196 632 LLASI------D----------ADGGLQASPCIRFNK-----EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (954)
Q Consensus 632 ~~~~~------~----------~~~~~~~v~~v~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 690 (954)
.-+.+ . ......+|..+++.. ..+.+++.-.+...+.|+..+...=...++.....-
T Consensus 369 ~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~-- 446 (910)
T KOG1539|consen 369 QSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK-- 446 (910)
T ss_pred HhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc--
Confidence 11110 0 001123455555543 234666666778899999877521122232211100
Q ss_pred cchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEec
Q 002196 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (954)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~ 770 (954)
.......++.+. -|+..+.|...|.|.+|+++.........
T Consensus 447 -----------------------------~~~~~~av~vs~------CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---- 487 (910)
T KOG1539|consen 447 -----------------------------DDINATAVCVSF------CGNFVFIGYSKGTIDRFNMQSGIHRKSFG---- 487 (910)
T ss_pred -----------------------------cCcceEEEEEec------cCceEEEeccCCeEEEEEcccCeeecccc----
Confidence 000011122222 26677888888999999998643332221
Q ss_pred CCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEE
Q 002196 771 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (954)
Q Consensus 771 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~ 850 (954)
....|..+|++++...-++.+++++.+|.+++|++..... +. .+. -...+.++.
T Consensus 488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l----------------------~~-~l~---l~~~~~~iv 541 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL----------------------KK-SLR---LGSSITGIV 541 (910)
T ss_pred cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce----------------------ee-eec---cCCCcceee
Confidence 1234899999999998889999999999999998764321 10 011 345677888
Q ss_pred eccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccc
Q 002196 851 LSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 929 (954)
Q Consensus 851 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~ 929 (954)
.+.....+|.+. |-.|+++|+.+.+.++.|.||.+.|++++||| ||++|++++.|++|++||+.++.++..+. -..+
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~ 619 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSP 619 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCc
Confidence 888888888887 78899999999999999999999999999999 99999999999999999999999998776 4577
Q ss_pred eeEEEEecCCCeEEEecCCc
Q 002196 930 ITGLAFSNTLNVLVSSGADS 949 (954)
Q Consensus 930 V~~l~~s~dg~~l~s~s~Dg 949 (954)
.+++.|||+|.+|||+..|+
T Consensus 620 ~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred ceeeEECCCCCEEEEEEecC
Confidence 89999999999999999884
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=281.24 Aligned_cols=293 Identities=17% Similarity=0.267 Sum_probs=263.5
Q ss_pred cceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
.++.+.+. |.+-|.|+++.|-++ .+++|+.|++|+|||+.+|++..+ +.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 45566666 999999999999987 889999999999999999998775 789999999999
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
+|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-+ .|++|+.|.++++||+++...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999999888 7889999999999999988 799999999999999999999999999
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
|..+|.++.+.+.. ..+++||.|++|++||++.++.......|...+.+++.+|....+++++.|. |+.|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-----ik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-----IKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-----ceeccCC
Confidence 99999999988765 5799999999999999999999999999999999999999999999988654 9999999
Q ss_pred CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec---C---CCCCCcceEEECCCCCEEEE
Q 002196 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA---D---GGLQASPCIRFNKEGILLAV 659 (954)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~v~~v~~s~~~~~l~s 659 (954)
.|..+..+.+|.. .+.+++...| ..+++|+++|.+.+||.++|...+.... + .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999999887 8888888766 5899999999999999999876665522 1 12346889999999999999
Q ss_pred EeCCCcEEEEEccC
Q 002196 660 STNDNGIKILANAD 673 (954)
Q Consensus 660 ~~~dg~i~iwd~~~ 673 (954)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997543
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=260.93 Aligned_cols=291 Identities=20% Similarity=0.310 Sum_probs=236.2
Q ss_pred EEEec-CCCCeeEEEEcCC-CCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 350 VMTLN-QGSAVKSMDFHPV-QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 350 ~~~~~-h~~~V~~~~~sp~-g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
++++. |.++|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.+++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeec
Confidence 34444 8899999999999 76 999999999999999985432221 111235799999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC---ceEEEec
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFE 504 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~ 504 (954)
|.|++||+|+.|.++.||.-..++ +....++.||...|.+++|+++|. +|+++++|++|-||.+..+ .+...++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999999999877544 555668999999999999999999 8999999999999998754 5778999
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC---CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.|...|..+.|+|.. .+|+++|.|.+|++|+-... .+...+..+...|.+++|++.|..|++++.++ ++++
T Consensus 148 ~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~----tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG----TVSI 221 (312)
T ss_pred cccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc----ceEe
Confidence 999999999999987 69999999999999976632 34667778888999999999999999998644 4999
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE-----ecCCCCCCcceEEECCC-CC
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-----DADGGLQASPCIRFNKE-GI 655 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~v~~s~~-~~ 655 (954)
|-..+ .+...+...++.+.|. ...|++++.|+.|++|.-...-.-..+ ..+.|...|++++|+|. ..
T Consensus 222 w~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 222 WRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence 97552 2333344478889997 568999999999999986642111111 11234568999999994 67
Q ss_pred EEEEEeCCCcEEEEEcc
Q 002196 656 LLAVSTNDNGIKILANA 672 (954)
Q Consensus 656 ~l~s~~~dg~i~iwd~~ 672 (954)
+|+++++||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999864
No 35
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=272.50 Aligned_cols=475 Identities=16% Similarity=0.231 Sum_probs=346.8
Q ss_pred cccceeeeeeCCCCCcceeecCCCC---------------CcceEEEec-CCCCeeEEEEcCCC-CeEEEEE--EcCCeE
Q 002196 321 LSVNILPVAYTPQSLGQSSYSTDDL---------------PKTVVMTLN-QGSAVKSMDFHPVQ-QILLVVG--TNMGDV 381 (954)
Q Consensus 321 ~~~~i~~~~~s~~g~~~~~~~~~~~---------------~~~~~~~~~-h~~~V~~~~~sp~g-~~ll~~g--~~dg~i 381 (954)
|...|.|++..|+...+++...... .-..++.++ -...|+|++||+.. ..++..- +.+..+
T Consensus 103 H~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~l 182 (626)
T KOG2106|consen 103 HNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHML 182 (626)
T ss_pred CCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcccc
Confidence 3335668999999888887654332 223344444 56789999999842 2233332 234568
Q ss_pred EEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeec
Q 002196 382 MLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA 461 (954)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 461 (954)
.|||++.+..... .......|....|.|.+..|+.....+.+.+|+.+++...+....+..
T Consensus 183 SVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek 243 (626)
T KOG2106|consen 183 SVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK 243 (626)
T ss_pred chhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc
Confidence 8999988765542 233567889999999776666666778899999999887776666665
Q ss_pred cc-CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC
Q 002196 462 HV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 462 h~-~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 540 (954)
+. ..|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...++ .|++|+.|+.|..|| ..
T Consensus 244 ~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G---tllSGgKDRki~~Wd-~~ 316 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG---TLLSGGKDRKIILWD-DN 316 (626)
T ss_pred ccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc---cEeecCccceEEecc-cc
Confidence 54 5799999999998 8999999999999998888777777999999999987654 577799999999999 43
Q ss_pred CCceeEe--eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC
Q 002196 541 LGSRVDY--DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 541 ~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 618 (954)
.+..... ....+.+..++=...+ |+++.. .+.|..=.++++.. ....+|.+ ....++.+|+.+.+++++.
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeEEcCCChhheeeccC
Confidence 3333332 2233466666543222 666553 22344444544433 33455655 7889999999999999999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhcccc
Q 002196 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 698 (954)
|+.+++|+ ..+++.+... ..++.|+.|+|.| .+|.|+..|...+.|.++. .++..-.
T Consensus 389 dk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~---------------- 445 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT---------------- 445 (626)
T ss_pred cceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe----------------
Confidence 99999999 4455544433 3467899999999 9999999999999998774 2221110
Q ss_pred CCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccc
Q 002196 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (954)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (954)
.+.+
T Consensus 446 ----------------------------------------------------------------------------d~~~ 449 (626)
T KOG2106|consen 446 ----------------------------------------------------------------------------DNEQ 449 (626)
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 2457
Q ss_pred eEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeE
Q 002196 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (954)
Q Consensus 779 v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 858 (954)
++.+.|+|+|.+|++++.|+.|.||.++.. |..+...-+. +..+|+.+.||+|++++
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k~--~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGKC--SGSPITHLDWSSDSQFL 506 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeeee--cCceeEEeeecCCCceE
Confidence 889999999999999999999999987642 2222111111 44899999999999999
Q ss_pred EEec-CCeEEEEEcccccEEEee------------------CCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccc-
Q 002196 859 MSAS-GGKISLFNMMTFKTMTTF------------------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE- 918 (954)
Q Consensus 859 a~~s-dg~i~iwd~~~~~~~~~~------------------~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~- 918 (954)
.+.+ |..|-.|.....+.+... ..+...|..++-+. +..++|+|.+.|.|++|...--+
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~ 585 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHLFSYPCSSP 585 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEEEccccCCC
Confidence 9999 899999953322221111 12344577788888 88999999999999999986543
Q ss_pred --eEEEecCCccceeEEEEecCCCeEEEecCCccee
Q 002196 919 --VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 919 --~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
....+.+|++.|++++|+.+...|.+.+.|.+|.
T Consensus 586 rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~ 621 (626)
T KOG2106|consen 586 RAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIM 621 (626)
T ss_pred cccceeeccccceeEEEEEeeCCceEEecCCCceEE
Confidence 3456779999999999999999999988998874
No 36
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=291.30 Aligned_cols=484 Identities=16% Similarity=0.203 Sum_probs=352.7
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC-cceee-eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~-~~~~~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
+..|...|.-+. |-|.+++++..++.+.||+..++ +.... ...+....+.|+++. +|..--.-++.|+.+|.+.+
T Consensus 110 ~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql 186 (910)
T KOG1539|consen 110 TLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQL 186 (910)
T ss_pred eccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEE
Confidence 445666666554 56889999999999999999884 22111 111222223377664 45421114899999999999
Q ss_pred EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
|++++++.+++++++...|+++.-+|-- ..++.|..+|+|.+++++..+....+....+.|++++|..||..+++.+.
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence 9999999999999999999999877766 58999999999999999999999999887789999999999998777653
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--C--ceeEEEecCCCCCCcce
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--V--NLLASIDADGGLQASPC 647 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~ 647 (954)
. .+.+.+||++..+.+......+...+....|.|....+++++.|..+++|=.++ | ..++.-. +|..+..|
T Consensus 265 ~---~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~ 339 (910)
T KOG1539|consen 265 S---NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSC 339 (910)
T ss_pred C---CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchh
Confidence 2 345999999999888887754444888899999999999999999888885554 3 2333333 44678889
Q ss_pred EEEC-CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccc
Q 002196 648 IRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 726 (954)
Q Consensus 648 v~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (954)
+.|. .+|..+.+++.|++.+.+++.........-..|... .-...+.. .+. ....| ..
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~-------------~~kk~~~~----~~~--~~k~p--~i 398 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK-------------RAKKVNVF----STE--KLKLP--PI 398 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc-------------cccccccc----chh--hhcCC--cc
Confidence 9998 688999999999999998875421000000000000 00000000 000 00011 11
Q ss_pred cccCCC-CCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeec
Q 002196 727 VGMSND-SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKW 805 (954)
Q Consensus 727 ~~~~~~-~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~ 805 (954)
..|.-. .+.....+.+++.-.+..++.|+..+......... ..+.+.....+++++.++.|.+.+.|.+.|.|.+|++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 122111 12222334444555567889999886443222111 1111224578999999999999999999999999977
Q ss_pred cCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCC
Q 002196 806 PRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP 884 (954)
Q Consensus 806 ~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~ 884 (954)
+.+ ..........+|..+|+.++...-++.+++++ +|.+++||......+..++ -.
T Consensus 478 QSG----------------------i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~ 534 (910)
T KOG1539|consen 478 QSG----------------------IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LG 534 (910)
T ss_pred ccC----------------------eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cC
Confidence 643 22222222234999999999998899999988 9999999999888888777 45
Q ss_pred CCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
..++++.++. ...++|++.+|-.|+++|+.+.+.++.|.||.+.|++++|||||+||++++.|++||+
T Consensus 535 ~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 535 SSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred CCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 5788999998 7889999999999999999999999999999999999999999999999999999986
No 37
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.1e-33 Score=287.77 Aligned_cols=575 Identities=16% Similarity=0.230 Sum_probs=374.1
Q ss_pred ccccceeeeeeCCCCC---cceeecCCCC---------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCC
Q 002196 320 NLSVNILPVAYTPQSL---GQSSYSTDDL---------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVG 387 (954)
Q Consensus 320 ~~~~~i~~~~~s~~g~---~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~ 387 (954)
+|...|.|+.|-|... ++.++..|.. .-..+.++.+ ..+.|++++..-. ...+...|+.+.+||.+
T Consensus 52 GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~-~~~~~~ad~~v~vw~~~ 129 (764)
T KOG1063|consen 52 GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSS-VMTCKAADGTVSVWDKQ 129 (764)
T ss_pred CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeee-EEEeeccCceEEEeecC
Confidence 4555677999998887 5666666652 2234445554 4666666665544 33334689999999996
Q ss_pred CCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CC-EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCC
Q 002196 388 SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 465 (954)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 465 (954)
..+......++ +.-...--.|+++.|+ +. .+|.|+.+..|.++.-..+ .......+.||.+.
T Consensus 130 ~~e~~~~~~~r---------------f~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el~GH~DW 193 (764)
T KOG1063|consen 130 QDEVFLLAVLR---------------FEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAELEGHTDW 193 (764)
T ss_pred CCceeeehhee---------------hhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEeeccchh
Confidence 65532211111 1111122346666773 44 3456677777888876644 34555689999999
Q ss_pred EEEEEEecCCC-ceEEEEEcCCCeEEEEECCCCc---------------------eE----------EEeccCCCCeEEE
Q 002196 466 VNDLAFSYPNK-QLSVVTCGEDRVIKVWDAVTGT---------------------KQ----------YIFEGHESPVYSI 513 (954)
Q Consensus 466 v~~~~~s~~~~-~~~l~s~~~dg~i~iwd~~~~~---------------------~~----------~~~~~~~~~v~~~ 513 (954)
|.+++|...+. .++++++|.|..|+||.+.-+. .. ..+.||.+.|+++
T Consensus 194 Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv 273 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSV 273 (764)
T ss_pred hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEE
Confidence 99999998766 6789999999999999764222 11 1134999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeE----e---eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----Y---DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
.|+|.. ..|++++.|.++.+|.-++..-+.. + .+.........|+|++..+++-+..|. .++|....
T Consensus 274 ~W~p~~--~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg----~hlWkt~d 347 (764)
T KOG1063|consen 274 WWHPEG--LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG----FHLWKTKD 347 (764)
T ss_pred EEccch--hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc----EEEEeccC
Confidence 999876 6899999999999998765533221 1 122235889999999999988776544 89997322
Q ss_pred ---CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-C---ceeEEEecCCCCCCcceEEECCCCCEEEE
Q 002196 587 ---GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-V---NLLASIDADGGLQASPCIRFNKEGILLAV 659 (954)
Q Consensus 587 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 659 (954)
......+.+|.. .|..++|+|.|.++++.|.|.+-|++-.-. . ..+..-+.|+ ..++|+++-+....+++
T Consensus 348 ~~~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG--yDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG--YDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ccceeeccccccccc-cceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc--ccceeeehccCCceeee
Confidence 234445667766 899999999999999999999999986541 1 1222223343 47899999886678889
Q ss_pred EeCCCcEEEEEccCCC-eeEEEeccccccceecchhccccCCccccccCCCCCccc-------------------ccccc
Q 002196 660 STNDNGIKILANADGI-RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT-------------------SLGER 719 (954)
Q Consensus 660 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 719 (954)
|.+...+|+|+..... +.+..+.+.... .......++....+|-+.-.+.+ ..+..
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~----~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFK----GSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCcccc----CchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 9999999999875320 000111110000 00000011111111111111110 00100
Q ss_pred -ccccccc----------cccCCCCC------CCCCCcccccccccc-----cccccccccccCCCceeEEecCCCCCcc
Q 002196 720 -TAPAAAM----------VGMSNDSR------NFTDVKPKIADEAVE-----KSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (954)
Q Consensus 720 -~~~~~~~----------~~~~~~~~------~~~~~~~lvs~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (954)
.+|.+.. .-+.+++- ..++++.++++.... .|++|+.....+... ..+|.-
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~-------L~~HsL 573 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE-------LEGHSL 573 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe-------ecccce
Confidence 0111100 00112211 146678888776544 578998875433321 234999
Q ss_pred ceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCe
Q 002196 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (954)
Q Consensus 778 ~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 857 (954)
.|+.++|||||++|++.+.|.++.+|...... .....+.. .+ .|..-|.++.|+||+++
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~------------------~~e~~fa~-~k--~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI------------------KDEFRFAC-LK--AHTRIIWDCSWSPDEKY 632 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeeccc------------------chhhhhcc-cc--ccceEEEEcccCcccce
Confidence 99999999999999999999999999864321 11111111 22 39999999999999999
Q ss_pred EEEec-CCeEEEEEcccc--cEEEe--eCCCCCCeeEEEecCCCCc----eEEEEecCccEEEEecc------c-cc---
Q 002196 858 VMSAS-GGKISLFNMMTF--KTMTT--FMPPPPAATFLAFHPQDNN----IIAIGMEDSSIQIYNVR------V-DE--- 918 (954)
Q Consensus 858 la~~s-dg~i~iwd~~~~--~~~~~--~~~h~~~v~~l~~sp~d~~----~lasgs~dg~i~iwd~~------~-~~--- 918 (954)
+|++| |.+|++|..... +.+.. ...+...|+.++|.|-+.. .++.|-..|.|.+|... + +.
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~ 712 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNL 712 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeee
Confidence 99999 999999998876 44333 3347888999999885443 88999999999999965 1 11
Q ss_pred --eEEEecCCccceeEEEEecC--------C--CeEEEecCCcceec
Q 002196 919 --VKTKLKGHQKRITGLAFSNT--------L--NVLVSSGADSQVRN 953 (954)
Q Consensus 919 --~~~~~~~h~~~V~~l~~s~d--------g--~~l~s~s~Dg~I~i 953 (954)
.+...-+|.+.|+.+.|+|. . ..|++|++|.++||
T Consensus 713 ~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri 759 (764)
T KOG1063|consen 713 DTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRI 759 (764)
T ss_pred ccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEE
Confidence 11222367889999999975 2 35699999999997
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.2e-34 Score=267.03 Aligned_cols=287 Identities=16% Similarity=0.241 Sum_probs=249.0
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
...+|.+.|+.+.|+|+|. ++|+|+.|..|.+|++....... ..+++|+++|..+.|.+|+
T Consensus 42 ~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCC
Confidence 3455999999999999998 89999999999999976543221 1267999999999999999
Q ss_pred CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 431 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
+.|++++.|.+|+.||+++|++.+ .+++|...|+++.-+.-|.. ++.+++.|+++++||+++..+++++. ....+
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql 177 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL 177 (338)
T ss_pred CEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeE
Confidence 999999999999999999999887 68899999999996666776 68899999999999999998888875 45678
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC----
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE---- 586 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---- 586 (954)
+++.|.... ..+++|+-|+.|++||++.........+|...|+.+..+|+|.++.+-+.+. ++++||.+-
T Consensus 178 tAv~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~----tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 178 TAVGFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN----TVRVWDVRPFAPS 251 (338)
T ss_pred EEEEecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc----eEEEEEecccCCC
Confidence 888887655 6899999999999999999999999999999999999999999999988754 499999874
Q ss_pred CeEEEEEecCCC---CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 587 GAVKRTYHGLGK---RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 587 ~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
.+++..+.++.. .....++|+|++.++-+|+.|..+++||......+..+++| .+.|++++|+|...+|.+++.|
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccC
Confidence 355777777632 12345789999999999999999999999988888888876 6689999999999999999999
Q ss_pred CcEEEE
Q 002196 664 NGIKIL 669 (954)
Q Consensus 664 g~i~iw 669 (954)
.+|++=
T Consensus 330 k~i~lg 335 (338)
T KOG0265|consen 330 KTIYLG 335 (338)
T ss_pred ceeEee
Confidence 999863
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=288.34 Aligned_cols=284 Identities=19% Similarity=0.308 Sum_probs=248.8
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
-..+|..+.|.|+|++ |++|+..|.+.+|+..+-. -..++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEE
Confidence 3458999999999995 6799999999999974321 1113678999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeec-ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
+|+.+|.|++|+..-.... .+.+ |...|.+++|+|++. .|++++.||+|+|||....+....+.+|.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999998754322 3444 448999999999888 69999999999999999999989999999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 593 (954)
.|+|.. .+++++|.|..|++||.+++.++..+..|...|..+.|+|++.+|++++.|. .++++|+++.+.+..+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhHhHHHHHh
Confidence 999987 6999999999999999999999999999999999999999999999998754 4999999998999999
Q ss_pred ecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 594 HGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 594 ~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. +.|...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99988 89999999964 677788899999999998666666654 3557789999999999999999999999999753
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=263.11 Aligned_cols=251 Identities=18% Similarity=0.319 Sum_probs=218.3
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|.+.|..+.|.+|+. .+++++.|.+|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976432 22236789999999999999999 79999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
|+++|++++.+++|...|+++.....+. .++.+++.|+++++||+++......+. ...+++++.|..++..+++++-|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 9999999999999999999998554333 688899999999999999877666553 24589999999999999999986
Q ss_pred CCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC----CceeEEEecCCCCCC--cc
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN----VNLLASIDADGGLQA--SP 646 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v~ 646 (954)
++ |++||++.+.....+.+|.+ +|+.+..+|+|.++++-+.|.++++||++. ..++..+.++.|.-. ..
T Consensus 196 n~----ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 196 ND----IKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred Cc----eeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 65 99999999999999999988 999999999999999999999999999875 344667766544333 44
Q ss_pred eEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 647 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++|+|++..+..|+.|..+++||....
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc
Confidence 7899999999999999999999998664
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=271.53 Aligned_cols=246 Identities=18% Similarity=0.292 Sum_probs=228.5
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 578999999999999999999999999999999999998665 7899999999999999888 89999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
|+...+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-.-.+++++.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999999999999999999999999887 689999999999999999999999999999999999999988899999875
Q ss_pred CCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
. +|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..++.+.+| ..-|++++.+.
T Consensus 299 ~----tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~ns 370 (460)
T KOG0285|consen 299 S----TVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNS 370 (460)
T ss_pred c----eEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeecc
Confidence 5 499999999999999988877 89999999999999999877 6999999999999998766 66889999998
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 002196 653 EGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 653 ~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
|+ ++++|++.|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 87 7888999999999999988
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=275.05 Aligned_cols=302 Identities=18% Similarity=0.248 Sum_probs=261.7
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
...+.+.+|..+|+.+-++|.. ..+++++.|++|++||..+++....+.+|...+..+.|+..|+++++++.|-.
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~--- 173 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS--- 173 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc---
Confidence 4456677899999999999877 68899999999999999999998889999999999999999999999986533
Q ss_pred EEEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCE
Q 002196 578 YLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656 (954)
Q Consensus 578 ~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 656 (954)
+.+||..+ .++++.+.+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+| ...|..++.+.||.+
T Consensus 174 -~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h--~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 174 -AKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH--SEWVRMVRVNQDGTI 249 (406)
T ss_pred -hhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc--hHhEEEEEecCCeeE
Confidence 89999887 467777788766 8999999999999999999999999999999999999977 558999999999999
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCC
Q 002196 657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (954)
Q Consensus 657 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (954)
+|+++.|.++++|-+.++ ++...+
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~l------------------------------------------------------- 273 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAEL------------------------------------------------------- 273 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhh-------------------------------------------------------
Confidence 999999999999998876 222222
Q ss_pred CCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcc
Q 002196 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 816 (954)
Q Consensus 737 ~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~ 816 (954)
+.|.-+|.+++|.|...+ ....
T Consensus 274 ------------------------------------R~hEh~vEci~wap~~~~--~~i~-------------------- 295 (406)
T KOG0295|consen 274 ------------------------------------REHEHPVECIAWAPESSY--PSIS-------------------- 295 (406)
T ss_pred ------------------------------------hccccceEEEEecccccC--cchh--------------------
Confidence 126778888998886531 0000
Q ss_pred cCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCC
Q 002196 817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895 (954)
Q Consensus 817 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 895 (954)
... .+.. .++++++++ |++|++||+.+|.++.++.+|.+.|..++|+|
T Consensus 296 --------------------~at--~~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p- 344 (406)
T KOG0295|consen 296 --------------------EAT--GSTN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP- 344 (406)
T ss_pred --------------------hcc--CCCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-
Confidence 000 0010 578999999 99999999999999999999999999999999
Q ss_pred CCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 896 d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
+|+||+++.+|+++++||+++++|..++..|..-|+++.|..+-.+++||+-|.+++|
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999886
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-32 Score=276.38 Aligned_cols=457 Identities=14% Similarity=0.172 Sum_probs=332.8
Q ss_pred ceeeeeeCCCCCcceee-------cCCCCCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeee
Q 002196 324 NILPVAYTPQSLGQSSY-------STDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (954)
Q Consensus 324 ~i~~~~~s~~g~~~~~~-------~~~~~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~ 395 (954)
+|-++.|.|-..++... .++......++.++ ..-+|+++.|-+-.+ .+++|+.|..|+||+..+++.+..
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~ekV~~- 92 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGEKVKT- 92 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEEecccceeeEE-
Confidence 45566666655543222 23334567777887 678999999999887 789999999999999999998875
Q ss_pred eeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCC
Q 002196 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (954)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 475 (954)
+..|..-|.|++.+|...+++++|.|-+|++||.+.+ ..+..++.||...|.+++|.|.+
T Consensus 93 ------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 93 ------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred ------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCC
Confidence 7889999999999999999999999999999999875 34445899999999999999988
Q ss_pred CceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceE
Q 002196 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST 555 (954)
Q Consensus 476 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 555 (954)
.. .+++++-|++|++|.+.+..+..++.+|...|+++++.+.++..++++|+.|.+|++||..+..++.++.+|.+.|.
T Consensus 153 ~n-tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs 231 (794)
T KOG0276|consen 153 PN-TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS 231 (794)
T ss_pred cc-ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce
Confidence 77 69999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEE
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 635 (954)
.+.|+|.-..+++|+.|++ +++|...+-+....+.-.-. .+.+++-.+.++.++.|..+|.|.+ .+..+++..+
T Consensus 232 ~v~fhp~lpiiisgsEDGT----vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vs 305 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDGT----VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVS 305 (794)
T ss_pred EEEecCCCcEEEEecCCcc----EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCcee
Confidence 9999999999999987554 99999998888777765555 8999998888888888887776643 4444444333
Q ss_pred EecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE---------EccCCCeeEEEeccccccceecchhccccCCcccccc
Q 002196 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL---------ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706 (954)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw---------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 706 (954)
+ ++.|+++.+... .|.-- ++.+|.++--.. .-+|
T Consensus 306 M--------------d~~gKIiwa~~~--ei~~~~~ks~~~~~ev~DgErL~Lsv---------------------KeLg 348 (794)
T KOG0276|consen 306 M--------------DSNGKIIWAVHS--EIQAVNLKSVGAQKEVTDGERLPLSV---------------------KELG 348 (794)
T ss_pred e--------------cCCccEEEEcCc--eeeeeeceeccCcccccCCccccchh---------------------hhcc
Confidence 3 334443333221 11111 222221110000 0011
Q ss_pred CCCCCccccccccccccccccccCCCCC-CCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEe
Q 002196 707 SANANVGTSLGERTAPAAAMVGMSNDSR-NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (954)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 785 (954)
...+.|... .+|+|+.+ +...||.-.||..-. +. ...-+.-..++|+
T Consensus 349 -------------------s~eiyPq~L~hsPNGrfV-~VcgdGEyiIyTala-----------~R-nK~fG~~~eFvw~ 396 (794)
T KOG0276|consen 349 -------------------SVEIYPQTLAHSPNGRFV-VVCGDGEYIIYTALA-----------LR-NKAFGSGLEFVWA 396 (794)
T ss_pred -------------------ccccchHHhccCCCCcEE-EEecCccEEEEEeee-----------hh-hcccccceeEEEc
Confidence 111222222 23444444 444457766665321 11 1144566789999
Q ss_pred cCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCe
Q 002196 786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK 865 (954)
Q Consensus 786 pdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~ 865 (954)
+|....++-.+++.|+++. +.+..+.+. ... + ...--.|.+|.+.+++.
T Consensus 397 ~dsne~avRes~~~vki~k---------------------nfke~ksi~--~~~--~------~e~i~gg~Llg~~ss~~ 445 (794)
T KOG0276|consen 397 ADSNEFAVRESNGNVKIFK---------------------NFKEHKSIR--PDM--S------AEGIFGGPLLGVRSSDF 445 (794)
T ss_pred CCCCeEEEEecCCceEEEe---------------------cceeccccc--ccc--c------eeeecCCceEEEEeCCe
Confidence 9988788888888888872 111111110 000 1 12223577888888999
Q ss_pred EEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEec
Q 002196 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (954)
Q Consensus 866 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~ 914 (954)
+++||..+++.++.+.- ....+.|+. +|.+++.++.|. .+|+.+
T Consensus 446 ~~fydW~~~~lVrrI~v---~~k~v~w~d-~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 446 LCFYDWESGELVRRIEV---TSKHVYWSD-NGELVAIAGDDS-FYILKF 489 (794)
T ss_pred EEEEEcccceEEEEEee---ccceeEEec-CCCEEEEEecCc-eeEEEe
Confidence 99999999999999863 346789998 899999888664 444443
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.4e-33 Score=305.88 Aligned_cols=286 Identities=20% Similarity=0.348 Sum_probs=250.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCc--eeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
+...|.|+.|+|+|+ .+++++.++.+++|+..+++ ... .+.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 478999999999999 58999999999999997665 222 14789999999999999999
Q ss_pred EEEEEcCCEEEEEEe-eCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 433 l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+++ .+++|+.|++|++||+++++++..+.+|...|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 8899999999999999996 799999999999999999999999999999999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCc--eeEeeCCCC--ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
+++|.+++ .++++++.|+.|++||+.++.. ...+..+.. .++++.|+|++.++++++.++ .+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEEEEccCC
Confidence 99998766 7999999999999999999883 344444333 589999999999999998654 4999999999
Q ss_pred eEEEEEecCCCC--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEe--CC
Q 002196 588 AVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND 663 (954)
Q Consensus 588 ~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--~d 663 (954)
.....+.+|... .+.+...++.+.++++|+.|+.|++||..++..+..+.+|. ...+..+.++|...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999998774 34445567889999999999999999999999999888775 56789999999999999998 78
Q ss_pred CcEEEEEcc
Q 002196 664 NGIKILANA 672 (954)
Q Consensus 664 g~i~iwd~~ 672 (954)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=248.84 Aligned_cols=290 Identities=17% Similarity=0.242 Sum_probs=248.5
Q ss_pred CCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEE
Q 002196 345 LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (954)
Q Consensus 345 ~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (954)
+|...++++. +.++|..+.|+-||+ +.++++.|.+|++|+...|.++.+ +.+|...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeee
Confidence 3444556666 889999999999999 667888999999999999998886 8899999999
Q ss_pred EEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC--ceEE
Q 002196 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG--TKQY 501 (954)
Q Consensus 424 l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~ 501 (954)
++.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. ++++|+.|.++++||.++. ++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999888 7899999999999999888 8999999999999998764 6788
Q ss_pred EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 502 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.+......|.++.+.. ..+++|+.||+++.||++.+.....+ -+++|++++|++|++..++++.+. ++++
T Consensus 140 ildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~s----tlrL 209 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDS----TLRL 209 (307)
T ss_pred hhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccc----eeee
Confidence 8888889999998754 57999999999999999987655444 356899999999999999988754 5999
Q ss_pred EeCCCCeEEEEEecCCCCC-eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE
Q 002196 582 WNESEGAVKRTYHGLGKRS-VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 660 (954)
.|-.+|+++..+.+|.... -..+++......+++|++||.|++||+.....+..+..+.. ..|.+++++|....++++
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEe
Confidence 9999999999999997632 22456777778999999999999999999999999887642 247899999987777776
Q ss_pred eCCCcEEEEEc
Q 002196 661 TNDNGIKILAN 671 (954)
Q Consensus 661 ~~dg~i~iwd~ 671 (954)
.. +.+..|--
T Consensus 289 ~~-~~~~~~~~ 298 (307)
T KOG0316|consen 289 TG-HGDLFWYQ 298 (307)
T ss_pred cC-Cceeceee
Confidence 53 45666643
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.7e-34 Score=277.35 Aligned_cols=284 Identities=15% Similarity=0.244 Sum_probs=245.7
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+- .....+..|..+|.++.|++++. ++++|+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 3468999999999999999999999999997542 22235678999999999999999 799999999999999655
Q ss_pred CceEEEecc-CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 497 GTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 497 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
.. ++.+.+ |...|.+++|+|.. ..+++++.||+|+|||....+....+.+|+-.|.++.|+|....+++++.|.
T Consensus 170 nn-Vk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-- 244 (464)
T KOG0284|consen 170 NN-VKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-- 244 (464)
T ss_pred hh-hHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--
Confidence 44 444555 45999999999854 7899999999999999999988888899999999999999999999998643
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC-CC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EG 654 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 654 (954)
.|++||.+++.++.++.+|.. .|..+.|.|++++|+++|.|..++++|+++.+.+.++++| ...|+++.|+| ..
T Consensus 245 --lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 245 --LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE 319 (464)
T ss_pred --eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccc
Confidence 699999999999999999988 9999999999999999999999999999988888888876 66899999999 66
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCC
Q 002196 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (954)
Q Consensus 655 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (954)
.+|.+|+.||.|..|.+... ..+
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~-~p~-------------------------------------------------------- 342 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLE-EPL-------------------------------------------------------- 342 (464)
T ss_pred cceeeccCCCceEEEecccc-ccc--------------------------------------------------------
Confidence 78999999999999987522 100
Q ss_pred CCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeecc
Q 002196 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (954)
Q Consensus 735 ~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~ 806 (954)
.....+|...|.+++|+|=|..|++++.|.++++|.-.
T Consensus 343 ----------------------------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 343 ----------------------------------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ----------------------------------cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 01112388899999999999999999999999999643
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=282.32 Aligned_cols=294 Identities=19% Similarity=0.286 Sum_probs=248.7
Q ss_pred CCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCC-CceeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 345 LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 345 ~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
+|+..++++. |...|+++.|.|-.-.||++|+.|+.|+||++.. ++++.+ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3677788877 9999999999995445999999999999999877 666654 789999999
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 502 (954)
.++|+++|..+++++.|+.|++||+++|+++.. +. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987752 22 3446899999999966 799999999999999999999999
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
+..|-+.|..+.|.+.+ .++++.+.|+++++|+.+..-.... .....+...++..+|++.++++-+.+ .+|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d----N~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD----NYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC----ceEEE
Confidence 99999999999998765 8999999999999999987654433 33345578899999999999987653 45888
Q ss_pred EeCCCC---eEEEEEecCCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC-CCCE
Q 002196 582 WNESEG---AVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGIL 656 (954)
Q Consensus 582 wd~~~~---~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 656 (954)
+..... .....+.+|.. +.-..+.|||||.+|++|+.||.+.+||.++.+.+..+..| ...+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecCCCcce
Confidence 875433 23345666643 13456899999999999999999999999999999999877 56899999999 4568
Q ss_pred EEEEeCCCcEEEEE
Q 002196 657 LAVSTNDNGIKILA 670 (954)
Q Consensus 657 l~s~~~dg~i~iwd 670 (954)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-31 Score=281.00 Aligned_cols=265 Identities=18% Similarity=0.301 Sum_probs=232.6
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+...+..|..++|+|...+++++-..|.|++||.+-+..+. .+..|.++|..++|+|++. ++++||.|-.|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34567899999999999999999999999999999988877 7889999999999999999 899999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
..+.+++.++.||-+.|..+.|++.- .+++++|.|.+|+||++.+.+++..+.+|.+.|.|..|+|....+++++-|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 99999999999999999999999876 6999999999999999999999999999999999999999999999998755
Q ss_pred CCceEEEEEeCCCCe-----------------------------EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 002196 574 EGESYLVEWNESEGA-----------------------------VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 624 (954)
+|++||+..-+ ....+.+|.. .|+-++|+|.-..|++|+.|+.|++
T Consensus 158 ----TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 158 ----TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ----eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 49999985211 1234567776 8999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceec
Q 002196 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (954)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 691 (954)
|.+...+.-..-...+|.+.|.++-|+|...++++.+.|+.|+|||+... ..++.++...+..+-+
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWIL 298 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEE
Confidence 99976554433333456889999999999999999999999999999887 7777776655554443
No 49
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-33 Score=294.92 Aligned_cols=247 Identities=17% Similarity=0.339 Sum_probs=226.9
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcc--------e--------------------eeeeeeecccCCEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--------L--------------------RNHLEIEAHVGSVND 468 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~--------~--------------------~~~~~~~~h~~~v~~ 468 (954)
-...++|..||+|++.||.|..|..|++|.+...+. + ....++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 347899999999999999999999999999874210 0 012357899999999
Q ss_pred EEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee
Q 002196 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD 548 (954)
Q Consensus 469 ~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 548 (954)
+.|+|+.+ +|++++.|+++++|.+.+..++..++||..+|+++.|+|.+ .+++|+|.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 79999999999999999999999999999999999999765 899999999999999999988999999
Q ss_pred CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
+|-..|.|+.|+|+..++++|+.| .++++||..+|..++.|.+|.+ +|.+++|+|+|.+|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSD----RTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCCC----ceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 999999999999999999999764 4699999999999999999988 99999999999999999999999999999
Q ss_pred CCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+++.+..+..| .+.|.++.|+.+|..||+|+.|..|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999877 779999999999999999999999999998754
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=266.50 Aligned_cols=294 Identities=15% Similarity=0.173 Sum_probs=245.8
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
++..|++.|+-+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4788999999999999999999999999999999987666666678999999999999999999 79999999999999
Q ss_pred ECCCCceEEEecc-CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 493 DAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 493 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
|+.+|.+.+.+.. +...+.+++|.|++ ..+++|+.|++|..||++......-.......|.+++.++||+++++.+.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999998887753 46889999999877 78999999999999998854322211122346999999999999999886
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
|. .|++++..+...+.....++ +|+++++|.+++++++.-.+..+.+||++..+.+..+.+|.....+..-+|.
T Consensus 375 d~----~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 375 DK----KIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred cc----ceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 54 49999987766554444443 8999999999999999999999999999988888888877554445555565
Q ss_pred C-CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccC
Q 002196 652 K-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMS 730 (954)
Q Consensus 652 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (954)
- +..++++|++|+.|+||+..++ .++..+.||...+..++.++.
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~---------------------------------- 493 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPA---------------------------------- 493 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCC----------------------------------
Confidence 4 5589999999999999999999 899999999988877644432
Q ss_pred CCCCCCCCCccccccccccccccccccc
Q 002196 731 NDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 731 ~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
+-.++++++.||+||||....
T Consensus 494 -------~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 -------DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -------CHHHhhccCCCCeEEEecCCc
Confidence 356789999999999998763
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.2e-31 Score=278.10 Aligned_cols=283 Identities=24% Similarity=0.412 Sum_probs=250.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.|.++|++++|+|+++ ++++|+.+|.|++|++.+++.... +..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 4889999999999998 788899999999999998764432 45788999999999999999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
++++.+|.|++|++.+++... .+..|...+.++.|+++++ ++++++.|+.|++||+.+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5778888999999999977 68888889999999999999999999999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 593 (954)
+|++.+ .++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++.++ .+.+||+++++.+..+
T Consensus 142 ~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG----TIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC----cEEEEECCCCceecch
Confidence 998864 6888888899999999998777777777777999999999999998887643 4999999999888888
Q ss_pred ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 594 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
..+.. .+.++.|+|++.++++++.||.|++||+.+++....+..+ ...+.+++|+|++.+|++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 8999999999888888888999999999998888888754 55899999999999999999999999995
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=267.27 Aligned_cols=274 Identities=21% Similarity=0.337 Sum_probs=234.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
....|+|+.+..+ .+++|..|++|+|||..+-.+... +.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence 4568999999754 579999999999999988776653 88999999999995 56999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc---eEEEeccCCCCeE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQYIFEGHESPVY 511 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~ 511 (954)
+|+.|.+|+|||+++|+++. ++.+|...|..+.|+. | ++++++.|.++.+||+.... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n-g---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN-G---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC-C---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 7889999999999983 3 79999999999999988754 3456789999999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
.+.|.. +++++++.|.+|++|++.+.+....+.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++
T Consensus 325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 998753 69999999999999999999999999999889988877 6888888876 4459999999999999
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE-------ecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-------DADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
.+++|.. -|.++.|. .+.+++|+.||+|++||+..+...... ....+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999987 89999995 678999999999999999876533211 11234667888888 466888899999
Q ss_pred cEEEEEccCC
Q 002196 665 GIKILANADG 674 (954)
Q Consensus 665 ~i~iwd~~~~ 674 (954)
+|.|||+.++
T Consensus 470 tILiWdFl~~ 479 (499)
T KOG0281|consen 470 TILIWDFLNG 479 (499)
T ss_pred eEEEEEcCCC
Confidence 9999999887
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-30 Score=240.77 Aligned_cols=242 Identities=17% Similarity=0.322 Sum_probs=205.2
Q ss_pred cCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeee-ecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
+.+|.+.|..++|+|- |..||+|+.|+.|+||+...+........+ .+|+..|.+++|+|.|+ +|++++.|.++.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEE
Confidence 6789999999999998 999999999999999999865444433333 47999999999999999 8999999999999
Q ss_pred EECCCC--ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC---ceeEeeCCCCceEEEEECCCCCEE
Q 002196 492 WDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 492 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
|.-..+ +++.++.||...|.+++|+.++ .+|++++.|+.|-+|.+.... +...+..|...|..+.|+|...+|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 975543 6788999999999999998766 799999999999999987443 345677888899999999999999
Q ss_pred EEEEeCCCCceEEEEEeCC---CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCC
Q 002196 567 FSCGTNKEGESYLVEWNES---EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
++++.|. +|++|+-. ...++.++.+|.. .|.+++|++.|..|++++.|++++||...+ .+. ..+..
T Consensus 166 ~S~SYDn----TIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~-~~~sr 234 (312)
T KOG0645|consen 166 FSCSYDN----TIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLS-GMHSR 234 (312)
T ss_pred EEeccCC----eEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeecc-----Ccc-hhccc
Confidence 9999855 49999755 3478999999988 899999999999999999999999998652 121 12355
Q ss_pred CcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 644 ASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 644 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
.++.+.|. ...|++++.|+.|+++.-.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEec
Confidence 78889998 4589999999999998654
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.7e-29 Score=258.23 Aligned_cols=493 Identities=13% Similarity=0.132 Sum_probs=336.8
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecc-cCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
-..+|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++ ...|.+++|++.++ |++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 458999999999999999999999999999998643332 45554 45799999997665 8999999999999999
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE--eeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+++....+....+.|++++.+|.. ..++.|+.||.+..++......... +....+.+.+++|+|++..++.|+.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D- 175 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID- 175 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-
Confidence 999999999999999999999877 6899999999777777665544332 33445689999999999999999864
Q ss_pred CCceEEEEEeCCCCeEEEEEe----c-C--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcc
Q 002196 574 EGESYLVEWNESEGAVKRTYH----G-L--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~----~-~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (954)
+.|++||..++..+.... + . ...-|.++.|-.+ ..|++|..-|+|.+||...+.+++.+..| ...|.
T Consensus 176 ---g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 176 ---GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ---ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 459999999987665221 1 1 1224666777644 58999999999999999999999999877 56899
Q ss_pred eEEECCCCCEEEEEeCCCcEEEEEccCCCe---eEEEeccccccceecchhccccCCccccccCCCCC--cccccc-ccc
Q 002196 647 CIRFNKEGILLAVSTNDNGIKILANADGIR---LLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN--VGTSLG-ERT 720 (954)
Q Consensus 647 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 720 (954)
+++.++++..+++++.|+.|.-+...++.. .......|...+..++.... ....|+.... +.+-.+ ...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----~l~sgG~d~~l~i~~s~~~~~~ 324 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----ALISGGRDFTLAICSSREFKNM 324 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----eEEecceeeEEEEccccccCch
Confidence 999999999999999999999998877633 22233445545444433222 1111111110 000000 000
Q ss_pred cccccccccCCCCCCCCCCcccccccccccccccccccccCCC---ceeEEecCCCCCccceEEEEEecCCceEEEeecC
Q 002196 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPS---QCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN 797 (954)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d 797 (954)
...........+....+..+.+..--....+.+|.+......+ ...-+.+..+ ....|.+.+.||+|++++.+.-.
T Consensus 325 ~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k-~~~nIs~~aiSPdg~~Ia~st~~ 403 (691)
T KOG2048|consen 325 DHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK-EKENISCAAISPDGNLIAISTVS 403 (691)
T ss_pred hhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecC-CccceeeeccCCCCCEEEEeecc
Confidence 0000001111111122223333333345667777776542221 1111111111 34678999999999977776644
Q ss_pred CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcccc-
Q 002196 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF- 874 (954)
Q Consensus 798 g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~- 874 (954)
..++|.++.. +. +++-.++. .+. .......+.|+-|+..++.++ +..+.+++..+.
T Consensus 404 -~~~iy~L~~~-----~~------vk~~~v~~-------~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps 462 (691)
T KOG2048|consen 404 -RTKIYRLQPD-----PN------VKVINVDD-------VPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS 462 (691)
T ss_pred -ceEEEEeccC-----cc------eeEEEecc-------chh--hhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence 6788876531 10 11111111 110 234567788888888877776 578888887653
Q ss_pred -cEEEeeC--CCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecC-CCeEEEecCCcc
Q 002196 875 -KTMTTFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT-LNVLVSSGADSQ 950 (954)
Q Consensus 875 -~~~~~~~--~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d-g~~l~s~s~Dg~ 950 (954)
+.+..+. +-...|..+..|| +|++||+.+.+|.|.+|++++++.......-...|++++|+|. ...|+.+..|+.
T Consensus 463 ~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQ 541 (691)
T KOG2048|consen 463 FKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQ 541 (691)
T ss_pred hhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCe
Confidence 3333222 2356799999999 9999999999999999999998755544344588999999964 567888888876
Q ss_pred e
Q 002196 951 V 951 (954)
Q Consensus 951 I 951 (954)
|
T Consensus 542 v 542 (691)
T KOG2048|consen 542 V 542 (691)
T ss_pred E
Confidence 5
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=259.82 Aligned_cols=232 Identities=16% Similarity=0.319 Sum_probs=203.8
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
....|+|+.+ |...+++|..|.+|+|||..+-.+.+ .+.||++.|.|+.|. .+ ++++|+.|.+|++||+.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4578999998 56789999999999999999887776 789999999999985 44 799999999999999999
Q ss_pred CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce---eEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence 999999999999999999863 58999999999999999876532 3456777799999985 558888875
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
+.+|++|++.+++.++++.+|.. .|.++.+ .++++++|+.|.+|++||+..|.++..+++| ..-|.|+.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd-- 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD-- 409 (499)
T ss_pred --CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--
Confidence 45699999999999999999987 7776665 5889999999999999999999999999977 6689999995
Q ss_pred CCEEEEEeCCCcEEEEEccCC
Q 002196 654 GILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 654 ~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.+.+++|+.||+|++||+..+
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 678999999999999999876
No 56
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-28 Score=246.11 Aligned_cols=429 Identities=18% Similarity=0.229 Sum_probs=313.5
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
.+-+-|.|..+...+ +.+.+++++..... .+.+|+..|.|++.+||.-.+++|-..|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCcccc
Confidence 456667776333333 34666776553222 2789999999999999999999874444
Q ss_pred --------EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCc--eEEEEEcCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 441 --------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ--LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 441 --------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
.++|||..+-..+. .+......|+|++|++-+.. +..+--+.+..+.+||+..+......+.....|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999977655444 55566778999999985432 223334567789999999998888888788889
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE---eeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
....|+|... +++++++ .+.+.+|+.+.+..... +.. ....|.|++|.++|..+ ++- .++.|.+|+..+
T Consensus 204 ~~a~FHPtd~-nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgD----S~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-NLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGD----SGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-cEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-eec----CCceEEEEeCCC
Confidence 9999999875 4555555 58999999887654433 222 22479999999999754 443 245699999998
Q ss_pred CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 587 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
.+..+....|.+ .|.+++...+|.. ++|+.|+.|..|| .+-+.++..+.+...+.|+.++-...+ |+.|..-+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888888887776 9999999988854 5599999999999 555666666666666677776654333 5556555444
Q ss_pred EEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccc
Q 002196 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (954)
Q Consensus 667 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~ 746 (954)
..=.++++..+.
T Consensus 352 L~Gt~~~~f~~~-------------------------------------------------------------------- 363 (626)
T KOG2106|consen 352 LQGTLENGFTLT-------------------------------------------------------------------- 363 (626)
T ss_pred EEeeecCCceEE--------------------------------------------------------------------
Confidence 332333221000
Q ss_pred ccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccC
Q 002196 747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826 (954)
Q Consensus 747 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~ 826 (954)
..+|......++..|+...+++++.|+.+++|+-
T Consensus 364 -------------------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--------------------- 397 (626)
T KOG2106|consen 364 -------------------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--------------------- 397 (626)
T ss_pred -------------------------EEecccceeeEEcCCChhheeeccCcceEEEccC---------------------
Confidence 0125556677888999999999999999999961
Q ss_pred CCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEec
Q 002196 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (954)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~ 905 (954)
.++..... -.+++.|++|+|.| .+|.|. .|...+.|..+...+..-.. ..++++++|+| +|.+||.|+.
T Consensus 398 ---~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~ 467 (626)
T KOG2106|consen 398 ---HKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSH 467 (626)
T ss_pred ---CceeEEEE----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecC
Confidence 11111111 35678899999999 999998 89999999998666655554 88899999999 9999999999
Q ss_pred CccEEEEecccc-ceEEEe-cCCccceeEEEEecCCCeEEEecCCcce
Q 002196 906 DSSIQIYNVRVD-EVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQV 951 (954)
Q Consensus 906 dg~i~iwd~~~~-~~~~~~-~~h~~~V~~l~~s~dg~~l~s~s~Dg~I 951 (954)
|+.|+||.+..+ ....+. +.|.++|+.|.||+|+++|++-+.|-.|
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 999999999864 333222 2344899999999999999999988654
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-30 Score=287.31 Aligned_cols=258 Identities=21% Similarity=0.376 Sum_probs=226.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC-
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA- 494 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~- 494 (954)
.|...|.++.|+++|+++++++.++.+++|+..+++. .....+.+|...|.+++|+|+++ ++++++.|++|++||+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3588999999999999999999999999999977662 12225689999999999999999 7999999999999999
Q ss_pred CCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCC
Q 002196 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 574 (954)
..+..++++.+|...|++++|++.+ +++++|+.|++|++||+++++....+..|...|++++|++++++|++++.|
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d-- 309 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD-- 309 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC--
Confidence 5668999999999999999999877 799999999999999999999999999999999999999999999999754
Q ss_pred CceEEEEEeCCCCe--EEEEEecCCCC-CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCC-CCcceEEE
Q 002196 575 GESYLVEWNESEGA--VKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL-QASPCIRF 650 (954)
Q Consensus 575 ~~~~i~iwd~~~~~--~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~ 650 (954)
+.|++||+.++. +...+..+... .+.++.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...
T Consensus 310 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 310 --GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred --ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 459999999999 56777777664 6899999999999999999999999999999999998877543 24445556
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 651 NKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
++.+.++++|+.|+.|++|++.++ ..+..+.+
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 789999999999999999999886 44444443
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=2.2e-29 Score=267.45 Aligned_cols=247 Identities=24% Similarity=0.398 Sum_probs=218.7
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|.++|++++|+|++++|++++.||.+++|++.+++... .+..|...+..+.|+|+++ .+++++.||.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876544 5778999999999999997 689999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.+++.+..+..|...+.++.|++.. .++++++.|+.|++||+++.+....+..+...+.++.|+|++.++++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 99988889999999999999998763 6888888899999999997777777777777899999999988888876433
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
.+.+||+++++.+..+..+.. .+.++.|+|+++.+++++.+|.|++||+.+++.+..+..+ ...+.++.|+|+
T Consensus 158 ----~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 158 ----TIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred ----cEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 499999999988888887765 8999999999999999999999999999998888877654 458999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCC
Q 002196 654 GILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 654 ~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.++++++.||.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 989998888999999998765
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=2.5e-31 Score=242.72 Aligned_cols=289 Identities=20% Similarity=0.310 Sum_probs=253.8
Q ss_pred eEEEecCCCCeeEEEEcC---CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 349 VVMTLNQGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp---~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
.+.--+|..+|..++||| +| ++|++++.||.-.+-+-++|..+.+ +.+|.+.|++..
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~ 66 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSAT 66 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeee
Confidence 344456999999999987 55 5899999999999999999998876 889999999999
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eEEEec
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFE 504 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~ 504 (954)
.+.+...-|+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.+..++|||++..+ +...+.
T Consensus 67 l~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 67 LNKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred cCchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhc
Confidence 99999999999999999999999998776 33 4888899999999999 69999999999999987654 567889
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
+|.+.|..+.|.... +.+++.+.|++||+||.+++.....+.. .+.|+++.++++|++|.++... .|.+||.
T Consensus 141 ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs-----sV~Fwda 212 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS-----SVKFWDA 212 (334)
T ss_pred CCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc-----eeEEecc
Confidence 999999999998655 6889999999999999999888777664 5689999999999988876532 3999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
.+...++.+...- .|.+..++|+...+++|++|..++.||..+++.+..+ ..+|.++|.|+.|+|+|...++|+.||
T Consensus 213 ksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 213 KSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCc
Confidence 9999988887654 5888999999999999999999999999999999886 224477999999999999999999999
Q ss_pred cEEEEEccCC
Q 002196 665 GIKILANADG 674 (954)
Q Consensus 665 ~i~iwd~~~~ 674 (954)
+|++|....+
T Consensus 290 TirlWQt~~~ 299 (334)
T KOG0278|consen 290 TIRLWQTTPG 299 (334)
T ss_pred eEEEEEecCC
Confidence 9999998766
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.3e-30 Score=234.55 Aligned_cols=247 Identities=19% Similarity=0.279 Sum_probs=219.6
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
..+..|.++|..+.|+-||+|.++++.|.+|++|+...|..++ ++.+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3467899999999999999999999999999999999998887 8999999999999999988 4999999999999
Q ss_pred EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC--ceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
||+.+|+.++.|.+|.+.|+.+.|+... ..+++|+.|.++++||.+... ++..+......|.++..+ +..|+++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999998665 799999999999999988654 344455555678888774 5678888
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEE
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (954)
+.|+. ++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+.+..+.+|.....=..++
T Consensus 162 S~DGt----vRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDGT----VRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCCc----EEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 77554 999999999988777765 89999999999999999999999999999999999999886665556777
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 650 FNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 650 ~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++.....+++|++||.|++||+.+.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 8888889999999999999999877
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=6.4e-32 Score=270.19 Aligned_cols=290 Identities=17% Similarity=0.231 Sum_probs=249.1
Q ss_pred ccCCCCCCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeC-CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
.+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++ ++.+|..+|.+++|+++|. .+++++.|+.++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4789999999999999 899999999999999999987 66666 8999999999999999999 599999999999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
+||+++|+++..|. ....++++.|+|++. +.+++|+.|+.|+.||+++++....+..|-+.+..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~-n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQ-NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCC-cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999987 456678999999874 7999999999999999999998888888889999999999999999998
Q ss_pred eCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC---ceeEEEecCCCCCCcce
Q 002196 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV---NLLASIDADGGLQASPC 647 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~ 647 (954)
.++ .+++|+.+.+..+............++..+|+++++++-+.|+.|.++.+... .....+.+|.-.+.-..
T Consensus 362 Ddk----s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 362 DDK----SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred cCc----cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 755 49999999988877666555557788999999999999999999999986542 22344555554556678
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccccc
Q 002196 648 IRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMV 727 (954)
Q Consensus 648 v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (954)
+.|||||.+|++|+.||.+.+||..+- +++..++.|...+..+...+.
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~------------------------------- 485 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPV------------------------------- 485 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCC-------------------------------
Confidence 999999999999999999999999988 788888888776665433221
Q ss_pred ccCCCCCCCCCCcccccccccccccccc
Q 002196 728 GMSNDSRNFTDVKPKIADEAVEKSRIWK 755 (954)
Q Consensus 728 ~~~~~~~~~~~~~~lvs~~~d~~i~iw~ 755 (954)
....+|+++.+|.|++|+
T Consensus 486 ----------e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 ----------EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------CcceeEecccCceeEecC
Confidence 135678999999999996
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.8e-29 Score=300.76 Aligned_cols=292 Identities=12% Similarity=0.165 Sum_probs=235.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (954)
.|.+.|++++|+|+|+ ++|+|+.|+.|+||+......... ...... ....+...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~-~~~~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPV-VELASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccce-EEecccCceeeEEeccCCCCE
Confidence 3889999999999998 789999999999999764211000 000000 0112346899999998 5789
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec-CCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
|++++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|+.|++||+.++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887655 6789999999999997 566 7999999999999999999998888754 6788
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC---
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--- 587 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--- 587 (954)
++.|.+ .++.++++|+.||.|++||+++.. ....+..|...|.++.|. ++..+++++.|+ .|++||+..+
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~----~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN----TLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC----EEEEEeCCCCccc
Confidence 888864 345899999999999999998765 345566788899999997 778899888644 4999999743
Q ss_pred ---eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec-----------CCCCCCcceEEECCC
Q 002196 588 ---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----------DGGLQASPCIRFNKE 653 (954)
Q Consensus 588 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~s~~ 653 (954)
..+..+.+|.. .+..++|+|++.+|++|+.|+.|++|+......+..+.. ..+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 56778888876 888999999999999999999999999876654433221 123346899999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 002196 654 GILLAVSTNDNGIKILAN 671 (954)
Q Consensus 654 ~~~l~s~~~dg~i~iwd~ 671 (954)
+..|++|+.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 63
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.6e-27 Score=246.91 Aligned_cols=519 Identities=13% Similarity=0.194 Sum_probs=347.9
Q ss_pred cccccceeeeeeCCCCCcceeecCCCC-------Cc-ceEEEe--cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCC
Q 002196 319 NNLSVNILPVAYTPQSLGQSSYSTDDL-------PK-TVVMTL--NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS 388 (954)
Q Consensus 319 ~~~~~~i~~~~~s~~g~~~~~~~~~~~-------~~-~~~~~~--~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~ 388 (954)
....+.|.++|||.+...+|....++. +. -+...+ +..+.|-+++|++.++ |.+.+.+|.|.-||+.+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEeccc
Confidence 344567899999999999888877654 11 122222 3567899999998887 56777899999999999
Q ss_pred CceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEE
Q 002196 389 RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVND 468 (954)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 468 (954)
++.... +....++|++++.+|.+..++.|+.||.+..++...++.. ....+...++.|.+
T Consensus 100 lk~~~~-------------------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 100 LKQKYN-------------------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-YKRSLMRQKSRVLS 159 (691)
T ss_pred CceeEE-------------------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE-EEeecccccceEEE
Confidence 987764 4456789999999999999999999997777777766533 33356667789999
Q ss_pred EEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec-------c-CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC
Q 002196 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-------G-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 469 ~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 540 (954)
++|+|++. .+++|+.||.|++||+.++..++... . ...-|+++.+..+ ..+++|..-|+|.+||...
T Consensus 160 lsw~~~~~--~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 160 LSWNPTGT--KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred EEecCCcc--EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccC
Confidence 99999998 59999999999999999998776221 1 2334677777643 4799999999999999999
Q ss_pred CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE---EEEEecCCCCCeEEEEEeCCCCEEEEEE
Q 002196 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 541 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
+.....+..+...|.+++..+++.+++++|.|+. +..|...+... ......++...+.+++..++ .+++|+
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~----ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK----IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc----eEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 9988889999999999999999999999998654 66666655432 22222333347899988765 899999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCCCcc-eEEECCCCCEEEEEeCCCcEEEEEccCCC--------eeEEEeccccccc
Q 002196 618 DEFMIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGILLAVSTNDNGIKILANADGI--------RLLRTVESRTFDA 688 (954)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v 688 (954)
.|..+.+-.....+...-.. +. ...-. -+...|. ++|..--.+..+.+|.+.+.. .+++........+
T Consensus 309 ~d~~l~i~~s~~~~~~~h~~-~~-~~p~~~~v~~a~~-~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nI 385 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNMDHRQ-KN-LFPASDRVSVAPE-NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENI 385 (691)
T ss_pred eeeEEEEccccccCchhhhc-cc-cccccceeecCcc-ceEEEEeccccccceeccCcccccccChhhheeeecCCccce
Confidence 99999886654311110000 00 00001 1222222 233333344556666554430 0111111000000
Q ss_pred eecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEE
Q 002196 689 SRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSL 768 (954)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~ 768 (954)
.+...+|+++.++.+.- ...++|.+.... .....
T Consensus 386 ------------------------------------------s~~aiSPdg~~Ia~st~-~~~~iy~L~~~~---~vk~~ 419 (691)
T KOG2048|consen 386 ------------------------------------------SCAAISPDGNLIAISTV-SRTKIYRLQPDP---NVKVI 419 (691)
T ss_pred ------------------------------------------eeeccCCCCCEEEEeec-cceEEEEeccCc---ceeEE
Confidence 11123456666665543 566777776311 11111
Q ss_pred ec-CCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCc
Q 002196 769 RL-PDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAV 846 (954)
Q Consensus 769 ~~-~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v 846 (954)
.. ......-.+..+.|+-|+..++..+ .+..+.+.++..+.+. .+ .. +...+....|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k----el---------------~~--~~~~~~~~~I 478 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK----EL---------------KS--IQSQAKCPSI 478 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh----hh---------------hc--cccccCCCcc
Confidence 11 1111334567788999998888777 5677777766543221 11 00 1111245789
Q ss_pred cEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceE-----
Q 002196 847 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK----- 920 (954)
Q Consensus 847 ~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~----- 920 (954)
..++.||||+|+|+.+ +|.|.+|++++++.......-...|+.++|+|.+...|+.+..++.+.-||++..+.-
T Consensus 479 ~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 479 SRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred eeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhc
Confidence 9999999999999998 9999999999877665554455789999999767888999999999999999543211
Q ss_pred ------EEecCCccceeEEEEecCCC
Q 002196 921 ------TKLKGHQKRITGLAFSNTLN 940 (954)
Q Consensus 921 ------~~~~~h~~~V~~l~~s~dg~ 940 (954)
..+..-...+..+.|.|..+
T Consensus 559 nt~nlpk~~~~l~~~~~gisfd~~n~ 584 (691)
T KOG2048|consen 559 NTRNLPKEPKTLIPGIPGISFDPKNS 584 (691)
T ss_pred cccccccChhhcCCCCceEEeCCCCc
Confidence 01112234577777776543
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.3e-29 Score=297.16 Aligned_cols=271 Identities=15% Similarity=0.202 Sum_probs=216.6
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC----cce
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG----DEL 453 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~----~~~ 453 (954)
+|.+++|+....+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888887765543210 11113459999999999999999999999999999997542 111
Q ss_pred e-eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCe
Q 002196 454 R-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532 (954)
Q Consensus 454 ~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~ 532 (954)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++.. +.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~-~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD-PTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCC-CCEEEEEcCCCE
Confidence 1 111222 4567999999986444 69999999999999999999999999999999999998633 379999999999
Q ss_pred EEEEeCCCCCceeEeeCCCCceEEEEEC-CCCCEEEEEEeCCCCceEEEEEeCCCCe-EEEEEecCCCCCeEEEEEeCCC
Q 002196 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTK 610 (954)
Q Consensus 533 i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 610 (954)
|++||+++......+..+ ..+.++.|+ ++|.++++++.++ .|++||++++. .+..+.+|.. .|..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg----~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADH----KVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCC----eEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999987776666543 578899995 5789999987644 59999998865 4667777776 89999997 67
Q ss_pred CEEEEEECCCeEEEEECCCC------ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 611 NRFLAAGDEFMIKFWDMDNV------NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++++++.|+.|++||+..+ .++..+.+| ...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 566677655 567889999999999999999999999997655
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2e-30 Score=254.04 Aligned_cols=292 Identities=17% Similarity=0.227 Sum_probs=249.2
Q ss_pred CCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEE
Q 002196 345 LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (954)
Q Consensus 345 ~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (954)
+|......+. |.+.|..+.|-++.. .|++|+.|..|++|++..++.. ....+.+..++|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~-----------------~~~tLaGs~g~it~ 224 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSE-----------------LISTLAGSLGNITS 224 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhh-----------------hhhhhhccCCCcce
Confidence 3445555666 899999999999966 6899999999999999887622 11236778899999
Q ss_pred EEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 424 l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
+.|.++++++++++.|+.+++|++...+... ++.+|++.|+++.|..... .+++|+.|.+|++||+....|..++
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccc
Confidence 9999999999999999999999999987666 8999999999999998776 3899999999999999998888776
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
. ....+.+|+..+ ..+++|-.|+.|++||.+..........++ .|+++..+++|..+++++.|. ++.+.|
T Consensus 300 l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd----tl~viD 369 (459)
T KOG0288|consen 300 L-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD----TLKVID 369 (459)
T ss_pred c-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC----ceeeee
Confidence 5 344566666542 568999999999999999988888877755 999999999999999997654 499999
Q ss_pred CCCCeEEEEEecCC---CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE
Q 002196 584 ESEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (954)
Q Consensus 584 ~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 660 (954)
+++......+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..|+++
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 99998888776532 224677899999999999999999999999999999999876555579999999999999999
Q ss_pred eCCCcEEEE
Q 002196 661 TNDNGIKIL 669 (954)
Q Consensus 661 ~~dg~i~iw 669 (954)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=6.3e-29 Score=234.05 Aligned_cols=307 Identities=15% Similarity=0.209 Sum_probs=237.8
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
-.|.+++.+.+|||||. ++|+|+.|..|+|.|++..-... ....+..-...........+.+|..+|+++.|+|....
T Consensus 109 t~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred eecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 34999999999999999 99999999999999987321100 00000000000000122346789999999999999999
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe---ccCCCC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGHESP 509 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~ 509 (954)
|++|+.|++|+++|+......+....+ ....+|.++.|+|.|. +++.|....++++||+.+-++...- .+|.+.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999764433322222 3556899999999999 7899999999999999998876543 468999
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-CCC-CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
|+++.+++.+ .+.++++.||.|++||--..+++..+. .|+ ..|.+..|..+|+++++.+. +..+++|.+.++
T Consensus 264 i~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 264 ITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEISTG 337 (430)
T ss_pred eeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeeecCC
Confidence 9999987665 799999999999999987777766543 333 48999999999999999886 456999999999
Q ss_pred eEEEEEecCCC----CCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 588 AVKRTYHGLGK----RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 588 ~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
+.+..+.+... .--+...|.....+++.-. ..+.+.-||.+++.....+.. +|.+.+..+.-+|.+.-++++++
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceeeecc
Confidence 99999987521 0112345777777777765 457899999999887766653 55778999999999999999999
Q ss_pred CCcEEEEEc
Q 002196 663 DNGIKILAN 671 (954)
Q Consensus 663 dg~i~iwd~ 671 (954)
|..+|+|--
T Consensus 417 D~raRFWyr 425 (430)
T KOG0640|consen 417 DFRARFWYR 425 (430)
T ss_pred cceeeeeee
Confidence 999999953
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=250.58 Aligned_cols=284 Identities=20% Similarity=0.280 Sum_probs=242.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
+....|.+++|||..++=+|+.+. -.+.||+..+.....+ +......|.++.|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEE
Confidence 345789999999977654554433 4689999887765542 34466899999999999999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
|+|...|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. ++++|+.|+.+++||+.+......+.+|++.|.+.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999977655555 68899999999999999887 79999999999999999998877899999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE-EEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRT 592 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~ 592 (954)
+++|..+ ..++|||.||.|++||++.......-..|+.+|..+.+-|.|..+++++.+ .+++||+.+|.. +..
T Consensus 160 ~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-----~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-----SVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-----eEEEEEecCCceehhh
Confidence 9998654 799999999999999999986666666788899999999999999998743 399999996654 444
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
+..|+. .|+|+++..++..|++++-|+.|++||+.+.+.+..+.. .++|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 234 ~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 234 MFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hhcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence 444666 999999999999999999999999999999999998876 457999999999999999999998877643
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.6e-29 Score=240.97 Aligned_cols=290 Identities=20% Similarity=0.334 Sum_probs=240.9
Q ss_pred CCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
++.+.+..+.|.+-|.++... ++ .+.+|+.||.+++||........ +.+|.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~~~~--------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKSIKT--------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCceEEE--------------------EecCCcceeee
Confidence 346677788899999999998 44 67899999999999987654332 67999999988
Q ss_pred EEccCC---CEEEEEEcCCEEEEEEeeCCccee-eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC----
Q 002196 425 MWSPDG---TLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---- 496 (954)
Q Consensus 425 ~~spdg---~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~---- 496 (954)
+|--.. ..+++++.|.++++|.++.++... ......||...|.++...++|. .+++|+.|.+|++|+..+
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 886533 359999999999999998775432 2223459999999999999999 699999999999999321
Q ss_pred ---------------------CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceE
Q 002196 497 ---------------------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST 555 (954)
Q Consensus 497 ---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 555 (954)
+.++..+.+|..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. ...+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 2255678899999999999873 5899999999999999999888776654 45889
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe---EEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCc
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGA---VKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 631 (954)
++.++|..++|++++.++ .+++||++++. ...++.+|.. .|.++.|+|.. ..|++++.|+++++||+++.+
T Consensus 305 ~i~~~~~~~Ll~~gssdr----~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSSDR----HIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCCCC----ceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999999999999998755 49999999863 5667889888 99999999976 457778899999999999877
Q ss_pred -eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 632 -LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 632 -~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
++..+..| ...|.++.|+ ++..+++|+.|.+|+|+.-
T Consensus 380 ~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccC--CceEEEEecc-CCceEEeccCcceEEEecc
Confidence 88888876 6689999998 4569999999999999864
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.9e-28 Score=216.31 Aligned_cols=312 Identities=17% Similarity=0.247 Sum_probs=240.4
Q ss_pred cceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
.+.+.+++....|.+++|+|.|. +.++|+...+++|.....-..+... .+...-.+.....--+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 35677888899999999999999 8899999999998865432211100 000000000111124568999999999
Q ss_pred ccCCCEEEEEEcCCEEEEEEee--CCcceeeeeeeecccCCEEEEEEecC---CCceEEEEEc-CCCeEEEEECCCCceE
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCG-EDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~~l~s~~-~dg~i~iwd~~~~~~~ 500 (954)
||+|++||+|+.|.+|++.... +.........+.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999987654 33334444468889999999999765 333 466554 5778888899999999
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC--C-----CCceEEEEECCCCCEEEEEEeCC
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--P-----GHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.+.+|.+.|.++. ++++ -.+++|+.|.+|++||++-..++..+.. + ...|.+++..|.|++|+++..|.
T Consensus 177 ~a~sghtghilaly-swn~--~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SWNG--AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred eeecCCcccEEEEE-EecC--cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 99999999998875 2333 7899999999999999997776655332 1 24789999999999999987644
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC--ceeEEEecCCCCCCcceEEEC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s 651 (954)
...+||++.++.++.+..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...|...+..+.|+
T Consensus 254 ----sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 254 ----SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred ----ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 388999999999999999987 8999999999999999999999999998642 122222222446678899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcc
Q 002196 652 KEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~ 672 (954)
|..--+++.+.|.++.+|.+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 998889999999999999753
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.8e-29 Score=230.49 Aligned_cols=289 Identities=12% Similarity=0.139 Sum_probs=240.6
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 350 ~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
+...+|..+++.+.++.+|. ||.++++|.++.||-..+|+.+.+ +.||++.|+|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44556999999999999999 999999999999999999998876 8899999999999999
Q ss_pred CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEE-----cCCCeEEEEECC-------CC
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-----GEDRVIKVWDAV-------TG 497 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~-----~~dg~i~iwd~~-------~~ 497 (954)
.+++++|+.|.++++||+++|+++. .+ ....+|..+.|+++|.. ++.. +..+.|.++|++ ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la---~~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLA---TW-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEE---Ee-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 9999999999999999999999876 33 35678999999999984 3332 234689999988 45
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
.+...+..+...++.+.|.+.+ ++|++|..||.|.+||++++..... ...|...|+.+.+++|..++++++.|.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt--- 212 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT--- 212 (327)
T ss_pred CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc---
Confidence 5678888889999999998877 7999999999999999999765544 466778999999999999999998754
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEE--EECCCC------------ceeEEEecCCCC
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF--WDMDNV------------NLLASIDADGGL 642 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~------------~~~~~~~~~~~~ 642 (954)
+-++||..+-+.++++.... ++++.+++|-..+++.|+.....-| =+.+.| +.+..+++ |.
T Consensus 213 -takl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--HF 287 (327)
T KOG0643|consen 213 -TAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--HF 287 (327)
T ss_pred -cceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--cc
Confidence 48999999999999998754 8999999998888888774322222 122222 34444554 47
Q ss_pred CCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 643 QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 643 ~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++|++++|+|+|+..++|+.||.|++.-+...
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 89999999999999999999999999866543
No 71
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.2e-28 Score=271.56 Aligned_cols=306 Identities=19% Similarity=0.274 Sum_probs=248.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEE--cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
++..|.++..+|||. .+|||+ .||.++||+.+.--.-. ..++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 446799999999999 789999 89999999975421000 001110 12222335679999999999999999
Q ss_pred EEEEEcCCEEEEEEeeC----------C-----cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 433 FGVAYSKHIVHLYTYHG----------G-----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
||+|+.|+.|.||+... | +..+....+.+|...|..++|+|++. ++++++.|++|.+||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234457889999999999999999 8999999999999999999
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC------CCceEEEEECCCCCEEEEEEe
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~ 571 (954)
+.+..+.+|.+.|..+.|.|.+ +|+++-+.|++|++|++.+.+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998876 89999999999999997765555444332 225788999999999999876
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCC-------------CC----EEEEEECCCeEEEEECCCCceeE
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-------------KN----RFLAAGDEFMIKFWDMDNVNLLA 634 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 634 (954)
-+.+...+.+.+-.+.+.-..+-+|.. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666778899999888888899999988 9999999872 11 56778899999999998777776
Q ss_pred EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.+..-. ...|..++|+|||..|+.++.||+|.++.++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 654322 347999999999999999999999999988653
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=232.19 Aligned_cols=283 Identities=17% Similarity=0.270 Sum_probs=240.3
Q ss_pred eeEeeCCCCceEEEEECC---CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC
Q 002196 544 RVDYDAPGHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF 620 (954)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 620 (954)
.....+|..+|..++||| +|-+|++++.|+. -.+-+-.+|..+-+|.+|.+ .|.+.++..+....++++.|=
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~----pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGK----PMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCC----chhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 344556777999999984 8989999887554 55667778999999999988 899998888888888899999
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCC
Q 002196 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 700 (954)
+-++||.-+|..+..+.. ..-|..++|+.|..+|++|+.+..+||||++..+.....+
T Consensus 82 takvw~a~tgdelhsf~h---khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~------------------- 139 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH---KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI------------------- 139 (334)
T ss_pred hhhhhhhhhhhhhhhhhh---hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh-------------------
Confidence 999999999999998853 4478999999999999999999999999987653221111
Q ss_pred ccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceE
Q 002196 701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780 (954)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~ 780 (954)
.+|.+.|.
T Consensus 140 ------------------------------------------------------------------------~ghtg~Ir 147 (334)
T KOG0278|consen 140 ------------------------------------------------------------------------SGHTGGIR 147 (334)
T ss_pred ------------------------------------------------------------------------cCCCCcce
Confidence 23778888
Q ss_pred EEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEE
Q 002196 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 860 (954)
Q Consensus 781 ~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 860 (954)
.+.|....+.++++++|++||+||.. ++..+.... .+.+|+++.+++||++|.+
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~r----------------------Tgt~v~sL~----~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHR----------------------TGTEVQSLE----FNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEec----------------------cCcEEEEEe----cCCCCcceeeccCCCEEEE
Confidence 99999999999999999999999654 444433322 5678999999999999999
Q ss_pred ecCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEe-cCCccceeEEEEecCC
Q 002196 861 ASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTL 939 (954)
Q Consensus 861 ~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~dg 939 (954)
+..+.|.+||.++...++.++.+ -.|.+...+| +...+++|+.|+.++.||+.+|+.+..+ ++|-++|-+|.|||||
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred ecCceeEEeccccccceeeccCc-cccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 99999999999999999888743 4589999999 8889999999999999999999999986 8999999999999999
Q ss_pred CeEEEecCCcceec
Q 002196 940 NVLVSSGADSQVRN 953 (954)
Q Consensus 940 ~~l~s~s~Dg~I~i 953 (954)
...++||+||+|||
T Consensus 280 E~yAsGSEDGTirl 293 (334)
T KOG0278|consen 280 ELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCCCceEEE
Confidence 99999999999996
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-28 Score=222.72 Aligned_cols=300 Identities=12% Similarity=0.175 Sum_probs=238.9
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
.+.+|..+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.+|.+.|+|+....+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998898777 8999999999999999988 69999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-----CCeEEEEeCC-------CCCceeEeeCCCCceEEEEEC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYD-------NLGSRVDYDAPGHSSTMMAYS 560 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s 560 (954)
|+.+|+++..++ ...+|..+.|++.+ ++++.+.. .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999998 57789999998877 45544433 4669999988 344566677777899999999
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCCCeEEE-EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
|-++.|++|..++. |..||.++|.... .-..|.. .|+.++++++..++++++.|.+-++||+.+-+.++++..
T Consensus 157 ~l~~~ii~Ghe~G~----is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDGS----ISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred ccCCEEEEecCCCc----EEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeee-
Confidence 99999999987655 9999999985544 4455555 899999999999999999999999999999999988865
Q ss_pred CCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccc
Q 002196 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (954)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (954)
..+|++.+++|-...++.|+..... |+.+-....-.
T Consensus 231 --e~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r~GK--------------------------------------- 266 (327)
T KOG0643|consen 231 --ERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTRAGK--------------------------------------- 266 (327)
T ss_pred --cccccceecccccceEEecCCceee---eeeeecccccc---------------------------------------
Confidence 3579999999977777766533211 11111000000
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCe
Q 002196 720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 799 (954)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~ 799 (954)
=..++|++...++.+ ..++|-++|.+++|+|+|+..++|++||.
T Consensus 267 -----------------------------FEArFyh~i~eEEig-------rvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 267 -----------------------------FEARFYHLIFEEEIG-------RVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred -----------------------------hhhhHHHHHHHHHhc-------cccccccCcceeEECCCCcccccCCCCce
Confidence 012333332211111 12468999999999999999999999999
Q ss_pred EEEeecc
Q 002196 800 HKLWKWP 806 (954)
Q Consensus 800 v~lw~~~ 806 (954)
|++.-+.
T Consensus 311 VR~h~Fd 317 (327)
T KOG0643|consen 311 VRLHHFD 317 (327)
T ss_pred EEEEEec
Confidence 9998654
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=237.46 Aligned_cols=289 Identities=15% Similarity=0.202 Sum_probs=245.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeee-----eeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH-----LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
.+..+-+.|..|||||++|++|+.||.|.+|+..+|+..+.. ..+.-+..+|.|+.|+.|.. ++++|+.||.|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkI 287 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKI 287 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcE
Confidence 356678899999999999999999999999999998754321 13445788999999999999 79999999999
Q ss_pred EEEECCCCceEEEec-cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 490 KVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
++|.+.+|.|++.|. +|...|+++.|+.++ ..+++++.|.++++.-+.+++....+.+|...|+...|++||.++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~--SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDN--SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCc--chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 999999999999997 899999999998765 78999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecC-CCCCCc
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQAS 645 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 645 (954)
++.|+. +++|+..+.+++.+|+.. .+.+|.++-.-|.+ ..++++...++|+|.++. |+.+..+... ...+..
T Consensus 366 aSsDgt----vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 366 ASSDGT----VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred ecCCcc----EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 987654 999999999999988754 34467777766654 678888889999999984 5777777533 223456
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccc
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (954)
.+++.+|.|.++.+.+.|+.++.+.+.+| .+.+.+.-|...+..+...
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HH------------------------------- 488 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHH------------------------------- 488 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccC-------------------------------
Confidence 78899999999999999999999999999 7888888777765544222
Q ss_pred ccccCCCCCCCCCCcccccccccccccccc
Q 002196 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWK 755 (954)
Q Consensus 726 ~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~ 755 (954)
|-.+.+++.+.||.+++|.
T Consensus 489 -----------PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 -----------PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -----------cccchhhhhcccchhhhcC
Confidence 3367788999999999995
No 75
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=8.9e-28 Score=246.69 Aligned_cols=217 Identities=17% Similarity=0.205 Sum_probs=160.0
Q ss_pred eEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 349 ~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.+..+. |++.|+.+.|+|-...|||+|+.|..|+||.+..|-...- ......+.+..-.|.|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecc
Confidence 344444 9999999999998777999999999999999985432210 00111244456688999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC-CceEEEeccC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGH 506 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 506 (954)
|...-|+..+..|+++|||+.+++.+. .+.+|...|.++.|+.||+ ++++++.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 977666666788999999999987665 7899999999999999999 899999999999999875 5778888888
Q ss_pred CCCeEEEeeeccCCccEEEEEecC----CeEEEEeCCCCCcee-EeeCC-CCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 507 ESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRV-DYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
.+. ..-.+.+-++-..|++.+.+ ..|++||.+...... .+... ...+.---|.||.++++.++ .|+..+.
T Consensus 213 ~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l~ 288 (1012)
T KOG1445|consen 213 GGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKLF 288 (1012)
T ss_pred ccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceEE
Confidence 765 33222233444567777665 468999998765432 22221 22556667899999988876 4466677
Q ss_pred EEeCCCC
Q 002196 581 EWNESEG 587 (954)
Q Consensus 581 iwd~~~~ 587 (954)
.+.+...
T Consensus 289 ~lE~~d~ 295 (1012)
T KOG1445|consen 289 MLEMQDR 295 (1012)
T ss_pred EEEecCC
Confidence 7776544
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=219.50 Aligned_cols=276 Identities=17% Similarity=0.234 Sum_probs=236.1
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCC
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT 431 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 431 (954)
.+|...|.+++|+.+|. -|++|+.|+++.+|++...+.... ....+|.+.|-.++|+| ...
T Consensus 17 ~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCc
Confidence 34788999999999999 679999999999999988754432 12678999999999999 577
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
.+++++.|.+|++||+..+++.. .... .+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.....+ ....+.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~---~i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTA---RIET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEE---Eeec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceee
Confidence 99999999999999999998776 3332 33344689999999 79999999999999999888776655 455678
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
-++|+.++ .+++.....|+|.|..+...+++..+..|.....|+.|+|+|+++++|+.|. .+.+||+..--+++
T Consensus 152 e~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA----lvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA----LVSLWDVDELICER 225 (313)
T ss_pred eeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc----eeeccChhHhhhhe
Confidence 88888544 5666666679999999998899999999999999999999999999998754 59999999998889
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
.+..+.- +|+.+.|+.+|++|+++++|..|-|=++++|..+..++.. ++...|+|+|...+||.+++|
T Consensus 226 ~isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~---~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE---GPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc---CCceeEEecCCCceeeEEecC
Confidence 8888765 9999999999999999999999999999999999999754 467899999999999988876
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-26 Score=219.97 Aligned_cols=283 Identities=15% Similarity=0.262 Sum_probs=233.2
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
-.+.|.++.|+++|. ++++++.|.+++|||..+++.+.+ ...+.-.|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 357899999999999 667788999999999999998875 344667889999988888777
Q ss_pred EEEc--CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 435 VAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 435 s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
.++. |.+|+..++.+.+.++ -+.||...|++++.+|-+. .+++++.|++|++||++..++...+.....++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999998888 7999999999999999998 79999999999999999988888776554444
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCC--ceeEeeCC---CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAP---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
++|.|.+ -++|++.....|++||++... +...+... ....+.+.|||||+.++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 4555554 678888877799999999763 23333333 447899999999999998875 335899999999
Q ss_pred eEEEEEecCCCCC--eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCc
Q 002196 588 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (954)
Q Consensus 588 ~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 665 (954)
....++..+.... -...+|+||++++++|+.||+|.+|+++++..+..+.+. +...+.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999988775422 246789999999999999999999999999999999875 35688999999987777765 457
Q ss_pred EEEEEccC
Q 002196 666 IKILANAD 673 (954)
Q Consensus 666 i~iwd~~~ 673 (954)
+.+|-+..
T Consensus 297 l~fw~p~~ 304 (311)
T KOG1446|consen 297 LVFWLPDE 304 (311)
T ss_pred EEEEeccc
Confidence 88886653
No 78
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=255.51 Aligned_cols=289 Identities=12% Similarity=0.098 Sum_probs=223.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 433 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 433 (954)
+-..|.....++|+. .+++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 345677777888876 35677777888889876654221 11111111112234789999999999999 89999
Q ss_pred EEEEcCCEEEEEEeeCCcc----eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCC
Q 002196 434 GVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 509 (954)
++|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|++||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999976532 1223368899999999999998754 6999999999999999999999999999999
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC-ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
|.+++|++++ .+|++++.|+.|++||+++......+..|.+ ....+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 9999998865 7999999999999999999887777776665 345788999998998887665557789999998754
Q ss_pred -EEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC
Q 002196 589 -VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (954)
Q Consensus 589 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (954)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+...... ....+..++|.|.-
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 33333333333555667899999999888 5999999999999887766442 24467888898853
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8e-28 Score=233.49 Aligned_cols=303 Identities=14% Similarity=0.214 Sum_probs=230.3
Q ss_pred CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC---CEEEEEECCCeEEEE
Q 002196 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFW 625 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iw 625 (954)
.|...|.++... +++|++++.|+. +++||. .|+....+.+|.+ ++.++++.-.. ..+++++.|.++++|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~----~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGT----SRIWDL-KGKSIKTIVGHTG-PIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCe----eEEEec-CCceEEEEecCCc-ceeeeEEEecCCccceEEEecCCceEEEE
Confidence 356677777776 789999998665 999995 5888999999988 88877665433 359999999999999
Q ss_pred ECCCCceeEEEec--CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccc
Q 002196 626 DMDNVNLLASIDA--DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 703 (954)
Q Consensus 626 d~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 703 (954)
..+.++....... .+|...|.+++..++|..+++|+.|..|.||+..+. ....+......-..
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E~~s~~rrk------------- 239 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELESSSNRRRK------------- 239 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC--ccccccccchhhhh-------------
Confidence 9887754433221 256789999999999999999999999999994332 11111111000000
Q ss_pred cccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEE
Q 002196 704 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLI 783 (954)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 783 (954)
..........+.-.....||..+|.++.
T Consensus 240 ----------------------------------------------------~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 240 ----------------------------------------------------KQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ----------------------------------------------------hhhhhhcccccCceEEecccccceeeEE
Confidence 0000000000111112246999999999
Q ss_pred EecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-
Q 002196 784 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS- 862 (954)
Q Consensus 784 ~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s- 862 (954)
|++ ...+++++.|.+|+.||+..+ ....... -...+.++.++|..++||+|+
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDletg----------------------~~~~~~~----~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLETG----------------------GLKSTLT----TNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred EcC-CCceEeecccceEEEEEeecc----------------------cceeeee----cCcceeEeecccccceeeecCC
Confidence 998 556899999999999987643 2222211 457889999999999999999
Q ss_pred CCeEEEEEccccc---EEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccc-eEEEecCCccceeEEEEecC
Q 002196 863 GGKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-VKTKLKGHQKRITGLAFSNT 938 (954)
Q Consensus 863 dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d 938 (954)
|..+++||..++. ...+|.+|.+.|.++.|+|.+..+|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|. +
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-E 399 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-C
Confidence 9999999987643 4567899999999999999888899999999999999999877 899999999999999998 6
Q ss_pred CCeEEEecCCcceecC
Q 002196 939 LNVLVSSGADSQVRNN 954 (954)
Q Consensus 939 g~~l~s~s~Dg~I~i~ 954 (954)
+..++|||.|++||||
T Consensus 400 ~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIF 415 (423)
T ss_pred CceEEeccCcceEEEe
Confidence 7799999999999996
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=218.92 Aligned_cols=249 Identities=16% Similarity=0.222 Sum_probs=211.9
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+.. ......+|.+.|-.++|.|.... .+++++.|.+|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence 36789999999999999999999999999999999987533 33357899999999999998877 69999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
|++++++........+.+. +.|+|++ .+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~-- 166 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN-- 166 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEEcCCC--CEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec--
Confidence 9999999998876555554 5666655 7999999999999999987665554432 34677889987777766653
Q ss_pred CCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
|.+.|.|.....-+++..+..|.. ...++.|+|+|+++++|+.|-.+.+||+..--+.+.+... .-+|+.+.|+.
T Consensus 167 --GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 167 --GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSH 241 (313)
T ss_pred --CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEecc
Confidence 245588888888999999999987 7888999999999999999999999999988888888755 55899999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 002196 653 EGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 653 ~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
||++||++++|..|-|=++++|
T Consensus 242 dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred CcceeeccCccceEEeEecccC
Confidence 9999999999999988888887
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-28 Score=220.81 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=226.8
Q ss_pred eEEEEcCC--CCeEEEEEE-----cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CC
Q 002196 360 KSMDFHPV--QQILLVVGT-----NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GT 431 (954)
Q Consensus 360 ~~~~~sp~--g~~ll~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 431 (954)
.++.|||- ++..+|++. ..|.+.|-++..++-+.+ +. -..-...+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 46777773 332233332 257899999875444432 11 1124578999999995 66
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
.+++++.||++++||+... -.++..++.|...|.++.|++..++ .+++++.|++|++|+...++.+.+|.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 8889999999999995432 2344478899999999999998777 588889999999999999999999999999999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCC-EEEEEEeCCCCceEEEEEeCCCC-eE
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESEG-AV 589 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~-~~ 589 (954)
...|+|... +.++++|.|+++++||++..+....+..|..++.++.|+.-.. .+++++. +..|+.||++.- .+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 999999766 7999999999999999999888888999999999999998555 4555554 456999999875 46
Q ss_pred EEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCC-ceeEEEecCCCCCCcceEEECC-CCCEEEEEeCCCcE
Q 002196 590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGI 666 (954)
Q Consensus 590 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i 666 (954)
+..+.+|.- .|+.+.|||.. ..|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+++.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 777777765 89999999975 67888999999999998853 455555544 55788899998 77899999999999
Q ss_pred EEEEc
Q 002196 667 KILAN 671 (954)
Q Consensus 667 ~iwd~ 671 (954)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99985
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.1e-28 Score=258.98 Aligned_cols=249 Identities=16% Similarity=0.263 Sum_probs=209.1
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc----------------------------c---------------
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD----------------------------E--------------- 452 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~----------------------------~--------------- 452 (954)
.|.+.|+++.||+||+|||+||.|+.|+||.+...+ .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999999999999999999999886500 0
Q ss_pred --------------eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeecc
Q 002196 453 --------------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518 (954)
Q Consensus 453 --------------~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 518 (954)
-+++..+.||.+.|.++.||.++ +|++++.|.+|++|++....++..|. |.+.|+|++|+|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 00123567999999999999876 69999999999999999999999998 9999999999998
Q ss_pred CCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC--
Q 002196 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-- 596 (954)
Q Consensus 519 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-- 596 (954)
.+ +|+++|+.||.|++|++...+...-... ..-|++++|.|||+..++|+.+| ..++|+....+....+.-+
T Consensus 421 DD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G----~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 421 DD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG----YCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred CC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEecc----EEEEEEccCCeEEEeeeEeec
Confidence 77 8999999999999999986544443333 36899999999999999999855 4999999887766554321
Q ss_pred -----CCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 597 -----GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 597 -----~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
....|+.+.|.|.. ..+++.+.|..|+|+|.+...++..+.+......-....|+.||++|+++++|..|++|+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 12269999998754 468888999999999999999999998765555567889999999999999999999999
Q ss_pred ccCC
Q 002196 671 NADG 674 (954)
Q Consensus 671 ~~~~ 674 (954)
....
T Consensus 575 ~~~~ 578 (712)
T KOG0283|consen 575 NDSF 578 (712)
T ss_pred CCCC
Confidence 8554
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.3e-27 Score=221.06 Aligned_cols=274 Identities=18% Similarity=0.270 Sum_probs=219.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCC-ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
..+.|.+++|||....++++|+-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 56789999999977778889999999999999873 3221 2346799999999999999999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+.....+|+|||.|++|+.||.+...++.++. -.+.++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999999644 47789999999999987665579999999999999999999988887 46677777
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEe--eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC--eE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AV 589 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~ 589 (954)
..-. .+++.+..++.|.+|++++....... ......+.|++..+|....+.|+..| .+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG----rv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG----RVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc----eEEEEecCCCCccC
Confidence 6532 47889999999999999865543322 11233788999988888888887633 3666665554 44
Q ss_pred EEEEecCCC--------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 590 KRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 590 ~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
-..|+.|.. ..|++++|+|....|+++|.||+..+||-.....+...+.+ ..+|+|++|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence 445565542 24677899999999999999999999998877777776655 66899999999999988653
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=225.40 Aligned_cols=293 Identities=17% Similarity=0.281 Sum_probs=232.6
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeC------------Ccce---eeeeeeecccCCEEEEEEecCCCc
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG------------GDEL---RNHLEIEAHVGSVNDLAFSYPNKQ 477 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~------------~~~~---~~~~~~~~h~~~v~~~~~s~~~~~ 477 (954)
.+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |... ..+.++-.|...|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3677999999999999999999999999999999862 1110 12336778999999999999988
Q ss_pred eEEEEEcCCCeEEEEECCCCceEEEec--cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe---eCCCC
Q 002196 478 LSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGH 552 (954)
Q Consensus 478 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~ 552 (954)
+|++|+.|++|++||+..-...+.++ ....+|.++.|+|.+ .+++.|....++++||+++.++.... ..|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 89999999999999987654333222 246789999999887 79999999999999999988776543 33556
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe-cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
.|+++.+++.|+..++++.||. |++||--+++++.++. .|.+..|.+..|..+++++++.|.|..+++|.+.++.
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~----IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGA----IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEeccCCc----EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999987665 9999999999988875 4566689999999999999999999999999999999
Q ss_pred eeEEEecCCCCC---CcceEEECCCCCEEEEEeC-CCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccC
Q 002196 632 LLASIDADGGLQ---ASPCIRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 707 (954)
Q Consensus 632 ~~~~~~~~~~~~---~v~~v~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 707 (954)
++..+.+-+..+ .-+...|+....+++.-.+ .+.+.-||..+.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta--------------------------------- 385 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA--------------------------------- 385 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch---------------------------------
Confidence 999987653221 2234556666666554432 355666766554
Q ss_pred CCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecC
Q 002196 708 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 787 (954)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 787 (954)
..+.+|.+ +|++.++.+.-||.
T Consensus 386 -----------------------------------------dr~~l~sl-----------------gHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 386 -----------------------------------------DRVALLSL-----------------GHNGAVRWIVHSPV 407 (430)
T ss_pred -----------------------------------------hhhhhccc-----------------CCCCCceEEEeCCC
Confidence 12223332 38899999999999
Q ss_pred CceEEEeecCCeEEEee
Q 002196 788 GLAILALASNAVHKLWK 804 (954)
Q Consensus 788 g~~l~~~~~dg~v~lw~ 804 (954)
+..+++++.|-..++|-
T Consensus 408 ~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCceeeecccceeeeee
Confidence 99999999999999994
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.1e-27 Score=257.02 Aligned_cols=284 Identities=18% Similarity=0.302 Sum_probs=247.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.+...+.|..|+ ++ .+++|+.+++|++||..++..+.. -+.+|.+.|++++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 356789999999 44 578999999999999999887653 167999999999999889999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
++|+.|.+++|||..+|++.. .+.+|...|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 88999999999987532 57899999999999999999999999999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRT 592 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 592 (954)
..+ . .++++|+.|++|++||+.+.++...+.+|.+.|+++.+.+. ..+++++.|+ .|++||+++. +++..
T Consensus 338 ~~~--~--~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~----~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD--E--PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT----TIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec--C--CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc----ceEeecCCchhhhhhh
Confidence 876 2 69999999999999999999999999999999999988765 8899998864 4999999999 99999
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
+.+|.. .+..+. ..++++++++.|++|++||..++++++.+... +...|..+++. ...+++++.||.+++||+.
T Consensus 409 l~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 999876 555444 45789999999999999999999999999874 34567777775 4688889999999999999
Q ss_pred CCCeeEEEe
Q 002196 673 DGIRLLRTV 681 (954)
Q Consensus 673 ~~~~~~~~~ 681 (954)
++ ...+.+
T Consensus 483 ~~-~~~~~l 490 (537)
T KOG0274|consen 483 SG-TLIRTL 490 (537)
T ss_pred cC-chhhhh
Confidence 98 444443
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-25 Score=213.48 Aligned_cols=248 Identities=14% Similarity=0.202 Sum_probs=209.9
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC--CCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~--dg~i~i 491 (954)
+..-...|.++.|+++|.+|++++.|.++++||..++++++ ++..+...+..++|...... ++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceEE
Confidence 45567899999999999999999999999999999998887 67778888999999988874 555555 889999
Q ss_pred EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
.++.+.+.++-|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....+ .++|+|.|-.++++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 9999999999999999999999999877 68999999999999999987777666554444 5789999998888764
Q ss_pred CCCCceEEEEEeCCCC--eEEEEEec--CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc-c
Q 002196 572 NKEGESYLVEWNESEG--AVKRTYHG--LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS-P 646 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~--~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 646 (954)
. ..|++||++.- .+..++.- ........+.|+|+|++|+.+...+.+++.|.-+|..+.++..+.....+ -
T Consensus 161 ~----~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 S----ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred C----CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 3 25999999863 33333332 22337888999999999999999999999999999999999876443322 4
Q ss_pred eEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 647 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
..+|+||++++++|+.||+|.+|+++++
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 7889999999999999999999999988
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.1e-28 Score=235.92 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=215.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+..+.|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998766 223347888889999999999999 689999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+...+...++.+|.+.|+++.|.... ..+++|+.|.+|+.||+....+..... ....+..++.+ ...++++..|+
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccccc
Confidence 99999999999999999999987655 349999999999999999865554432 34455666665 45566666554
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC--CCCCcceEEEC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCIRFN 651 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~~s 651 (954)
.|++||.+++.+......+. .|+++..++++..+++++.|.++.+.|+++.+....+...+ .....+.+.||
T Consensus 323 ----kvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 323 ----KVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ----ceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 39999999999999888765 79999999999999999999999999999998888886542 22357899999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCeeEEEe
Q 002196 652 KEGILLAVSTNDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 681 (954)
|++.|+++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 555444
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.3e-27 Score=216.05 Aligned_cols=252 Identities=13% Similarity=0.223 Sum_probs=207.9
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.....+.-.+.+..++|++.....+++++.||+++|||+..... +...++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34555667889999999999988999999999999999543321 222478899999999999
Q ss_pred c-CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC
Q 002196 428 P-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (954)
Q Consensus 428 p-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 506 (954)
+ +++.+++++.|++|++|+...++.+. ++.+|...|...+|+|.... ++++++.|+.+++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 67778888999999999998877776 79999999999999998887 6999999999999999875555558999
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCceEEEEECCCCC-EEEEEEeCCCCceEEEEEeC
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~ 584 (954)
...|.++.|+.... ..++||+.|+.|+.||+++.+. +..+.+|+-.|..+.|||... .|++++. +-++++||.
T Consensus 190 ~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~ 264 (311)
T KOG0277|consen 190 NSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDP 264 (311)
T ss_pred cceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEeccc
Confidence 99999999987554 7999999999999999998664 456777888999999999754 5666765 445999998
Q ss_pred CCCe-EEEEEecCCCCCeEEEEEeC-CCCEEEEEECCCeEEEEEC
Q 002196 585 SEGA-VKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 585 ~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~ 627 (954)
..+. .+.+...|.. -+..+.|++ ++.++++++-|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 8554 4445555544 788888887 4578999999999999984
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-26 Score=242.03 Aligned_cols=278 Identities=18% Similarity=0.268 Sum_probs=238.5
Q ss_pred eEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC
Q 002196 360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 439 (954)
Q Consensus 360 ~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d 439 (954)
+-+.|+..+ +||+|. ...|++|+..+++.... ...+...|+++.|+++|++||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 356788554 566664 35799999999985542 22237899999999999999999999
Q ss_pred CEEEEEEeeCCcceeeeeeeec-ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE-eccCCCCeEEEeeec
Q 002196 440 HIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHH 517 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~ 517 (954)
|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877666 6677 99999999998 44 589999999999999998876655 889999999999987
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC
Q 002196 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 518 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
+. .++++|+.|+.+.|||.........+..|...|..++|+|-. ..|++|+ |..+.+|++||..++..+..+...
T Consensus 312 d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 DG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GSADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CCcccEEEEEEcCCCcEecccccC
Confidence 76 799999999999999998888899999999999999999965 4566665 456888999999999999888765
Q ss_pred CCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 597 GKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
. .|.++.|++..+.|+++. .++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 799999999998777754 6779999999999999999877 668999999999999999999999999998764
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.5e-27 Score=242.81 Aligned_cols=248 Identities=19% Similarity=0.246 Sum_probs=208.4
Q ss_pred CCCCeE---EEEEcc-CCCEEEEEEcCCEEEEEEeeCCcce---eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 417 YTASVN---RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 417 h~~~V~---~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
|...|. .+..+. ++++|.+||+||.|++|++...... .....+..|...|+.++...+++ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 445555 444544 6778999999999999998654321 12336788999999999999998 59999999999
Q ss_pred EEEECCCC--ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee----------Eee-CCCCceEE
Q 002196 490 KVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----------DYD-APGHSSTM 556 (954)
Q Consensus 490 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~-~~~~~v~~ 556 (954)
++|+...+ -+..++..|.+.|.|+++-. .+...+++|+.|+.|.+||++++.... ... ++...+++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 99999887 57888999999999999843 233799999999999999999763311 111 44558999
Q ss_pred EEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE
Q 002196 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 636 (954)
++.++.|..+++|+..+. +++||.++++.+..+.+|.. .|..+..++||..+++++.||+|++||+...+++.++
T Consensus 177 LA~N~t~t~ivsGgtek~----lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKD----LRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eecCCcceEEEecCcccc----eEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 999999988888876554 99999999999999999988 8999999999999999999999999999999999999
Q ss_pred ecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 637 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
..| ...|.++..+|+-..+.+|+.||.|..=|+.+.
T Consensus 252 ~vH--~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 252 IVH--KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred Eec--cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 887 556999999999999999999999998888765
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5e-26 Score=226.80 Aligned_cols=297 Identities=16% Similarity=0.234 Sum_probs=235.5
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEec----cCCCccccccccCCCCCCeEEEEEc
Q 002196 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL----GACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.-.|.-+|.||+++||++ ..++++.+|+|.-|++.+++.... +|.- .....+....- .+|...|.+++.|
T Consensus 138 ~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS 211 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVS 211 (479)
T ss_pred eccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEc
Confidence 344999999999999999 678999999999999999985521 1211 10111222221 4899999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
+||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|++.....+.++.+|+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 999999999999999999999988777 7899999999999987666 48999999999999999999999999999
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
+.|.++...... ..+-.|+.|+++++|++. ......+..+...+.|++|-.+ .++++|+.+|. |.+|++.+.
T Consensus 287 d~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~----IaLWs~~KK 358 (479)
T KOG0299|consen 287 DGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS----IALWSLLKK 358 (479)
T ss_pred cceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCce----EEEeeeccc
Confidence 999999866544 455566699999999994 3455667777778999999855 56788876554 999999988
Q ss_pred eEEEEEecCCC-----------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----ceeEEEecCCCCCCcceEEECC
Q 002196 588 AVKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 588 ~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
+++.+....++ ..|++++..|..+.+++|+.+|.|++|-+..+ .++..+.. .+.|++++|++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~ 435 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSN 435 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEcc
Confidence 88776643221 16788999999999999999999999998876 44455543 45799999999
Q ss_pred CCCEEEEE-eCCCcEEEEE
Q 002196 653 EGILLAVS-TNDNGIKILA 670 (954)
Q Consensus 653 ~~~~l~s~-~~dg~i~iwd 670 (954)
+|+.+++| +....+--|-
T Consensus 436 sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 436 SGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCEEEEecccccccceee
Confidence 99955544 4455554453
No 92
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.5e-25 Score=243.02 Aligned_cols=256 Identities=10% Similarity=0.125 Sum_probs=196.2
Q ss_pred EEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcc-
Q 002196 375 GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDE- 452 (954)
Q Consensus 375 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~- 452 (954)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4456677777765543322 26789999999999996 88999999999999999986432
Q ss_pred e----eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe
Q 002196 453 L----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528 (954)
Q Consensus 453 ~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 528 (954)
. .....+.+|...|.+++|+|++.. ++++++.|++|++||+++++.+..+. |...|.+++|++++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122357889999999999999885 46899999999999999998887776 66789999998765 7899999
Q ss_pred cCCeEEEEeCCCCCceeEeeCCCCceE-----EEEECCCCCEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecCCCC-Ce
Q 002196 529 TDGKIKAWLYDNLGSRVDYDAPGHSST-----MMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKR-SV 601 (954)
Q Consensus 529 ~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~-~i 601 (954)
.|+.|++||+++......+..|.+.+. ...|++++.++++++.++..+..|++||+++ +.++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999888777777766433 2345689999999988765566799999985 5566555433221 22
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC
Q 002196 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (954)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (954)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 233334558889999999999999998764 4444443445678899999964
No 93
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3e-25 Score=244.05 Aligned_cols=255 Identities=16% Similarity=0.199 Sum_probs=203.1
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcce----------eeeeeeecccCCEEEEEEec-CCCceEEEEEcC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL----------RNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGE 485 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~ 485 (954)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|.+++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4456677777888777788877777777876544322 11224778999999999999 666 6999999
Q ss_pred CCeEEEEECCCC-------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 486 DRVIKVWDAVTG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 486 dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
|++|++||+.++ .++..+.+|...|.+++|+|..+ .+|++++.|++|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998653 6899999999999999998887777888888999999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE----CCCeEEEEECCCCc-ee
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN-LL 633 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 633 (954)
|+|+|..|++++.|+ .|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~Dg----~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSKDK----KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecCCC----EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 999999999998654 5999999999999999888764556678889888888765 47899999998754 33
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEccCCCeeEEE
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRT 680 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 680 (954)
.....+ ....+....|++++.+|++++ .|+.|++||+.++ .....
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~ 297 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFC 297 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEE
Confidence 333322 233455678999999999887 5999999999987 44433
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3e-26 Score=230.73 Aligned_cols=296 Identities=13% Similarity=0.222 Sum_probs=228.2
Q ss_pred eEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC----eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC
Q 002196 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF 620 (954)
Q Consensus 545 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 620 (954)
..+..+...|..+++.|.|..+++|+. +.+|++||.... +..+.+.......|.++.|++.|..|++.+...
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 345555668999999999999999987 445999998643 223344444445899999999999999999999
Q ss_pred eEEEEECCCCceeEEEec----------CCCCCCcceEEECCCC-CEEEEEeCCCcEEEEEccCCCeeEEEeccccccce
Q 002196 621 MIKFWDMDNVNLLASIDA----------DGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS 689 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~----------~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 689 (954)
..+|+|....+......+ .+|...++|.+|+|+. ..+++++.||++||||+.......+.++...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~---- 312 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP---- 312 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc----
Confidence 999999876655554432 3567789999999954 5788999999999999987654444443211
Q ss_pred ecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEe
Q 002196 690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769 (954)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~ 769 (954)
T Consensus 313 -------------------------------------------------------------------------------- 312 (641)
T KOG0772|consen 313 -------------------------------------------------------------------------------- 312 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCC--Ccc
Q 002196 770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED--AVP 847 (954)
Q Consensus 770 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~v~ 847 (954)
..+....++..+|++||++|++++.||.|.+|+.......+.. . -..+|.. .|+
T Consensus 313 --~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-----------------~-----vk~AH~~g~~It 368 (641)
T KOG0772|consen 313 --AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-----------------K-----VKDAHLPGQDIT 368 (641)
T ss_pred --CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-----------------E-----eeeccCCCCcee
Confidence 1123456888999999999999999999999986432111111 1 1123655 899
Q ss_pred EEEeccCCCeEEEec-CCeEEEEEcccc-cEEEeeCCC--CCCeeEEEecCCCCceEEEEec------CccEEEEecccc
Q 002196 848 CFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPP--PPAATFLAFHPQDNNIIAIGME------DSSIQIYNVRVD 917 (954)
Q Consensus 848 ~~~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~h--~~~v~~l~~sp~d~~~lasgs~------dg~i~iwd~~~~ 917 (954)
|+.||+||++|++-+ |+++++||+... +++.+..+- .-+-+.++||| +.++|++|.. .|++.+||..+-
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccce
Confidence 999999999999999 999999999754 344444332 23468899999 8999999863 468999999999
Q ss_pred ceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 918 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
+.++++.-....|..+.|+|--..|+.|+.||++.|
T Consensus 448 d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 448 DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 999999888889999999999888999999999876
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-26 Score=237.86 Aligned_cols=244 Identities=16% Similarity=0.300 Sum_probs=216.2
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCC-CCCCeEEEEEccCCCEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD-YTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~ 434 (954)
...|+++.|+++|. .||+|..+|.|.|||....+.+.. +.+ |...|-+++|+ +..+.
T Consensus 217 ~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW~--~~~ls 274 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAWN--SSVLS 274 (484)
T ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEecc--CceEE
Confidence 88999999999999 889999999999999988876654 455 99999999999 77899
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 514 (954)
+|+.|+.|..+|+...+.... .+.+|...|..++|++|+. ++++|+.|+.+.|||.....++..+..|.+.|.+++
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred EecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 999999999999998775543 3789999999999999999 699999999999999988889999999999999999
Q ss_pred eeccCCccEEEEEe--cCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 515 PHHKENIQFIFSTA--TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 515 ~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
|+|... ..||+|+ .|++|++||..++....... .+..|.++.|++..+.|+++.... +..|.+|+..+.+.+..
T Consensus 351 wcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s--~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 351 WCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS--ENQITLWKYPSMKLVAE 426 (484)
T ss_pred eCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC--CCcEEEEeccccceeee
Confidence 999877 5888875 59999999999766555443 467999999999998888876433 44699999999999999
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 427 l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999988 8999999999999999999999999998764
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=247.46 Aligned_cols=263 Identities=14% Similarity=0.218 Sum_probs=202.7
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeee------------------------------------eee
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV------------------------------------KSF 397 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~------------------------------------~~~ 397 (954)
.|.+.|+++.||+||+ +||+|+.||.|+||.+...+.... +..
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 4999999999999999 889999999999999877221100 000
Q ss_pred ----EEEec-cCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEe
Q 002196 398 ----KVWEL-GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472 (954)
Q Consensus 398 ----~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s 472 (954)
..... .-...+.+...+.||.+.|..+.||.+ ++|++++.|.+|++|++....+++ ...|...|+|++|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 00000 000011222357899999999999975 588999999999999999988887 34599999999999
Q ss_pred cCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC---
Q 002196 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--- 549 (954)
Q Consensus 473 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--- 549 (954)
|-+.+ +|++|+-||.|+||++...+.+.-... ..-|+++||.|++ ++.+.|+.+|.+++|+....+.......
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdG--k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDG--KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCC--ceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 98887 899999999999999988776655443 4789999999875 8999999999999999887655443221
Q ss_pred -----CCCceEEEEECCCCC-EEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCC-CeEEEEEeCCCCEEEEEECCCeE
Q 002196 550 -----PGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMI 622 (954)
Q Consensus 550 -----~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i 622 (954)
.+..|+.+.|.|... .+++.+. |..|+|+|.++..++.+|++.... .-....|+.||++|+++++|..|
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSn----DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSN----DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecC----CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 133799999987543 3555443 445999999999999999876542 33457899999999999999999
Q ss_pred EEEECCCC
Q 002196 623 KFWDMDNV 630 (954)
Q Consensus 623 ~iwd~~~~ 630 (954)
++|+....
T Consensus 571 YiW~~~~~ 578 (712)
T KOG0283|consen 571 YIWKNDSF 578 (712)
T ss_pred EEEeCCCC
Confidence 99998543
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2e-25 Score=220.42 Aligned_cols=284 Identities=15% Similarity=0.206 Sum_probs=244.4
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
..+.++...|... .+.+|+.|..+.++|..+++.+.. +.||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3688888888744 788999999999999999887764 89999999999999999999999
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc--CCCCeEEEe
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSIC 514 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 514 (954)
+.|..|+||......... ....|..+|+.+..+|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999987765443 5778999999999999999 899999999999999999998876654 234578999
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 594 (954)
|+|++ ..+.+|..|+.+++||+........|.+|.++|..++|+.+|-+|+++..|+. |++||++.-+...++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~----V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS----VKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe----EEEEEehhhcccceee
Confidence 99876 79999999999999999999988899999999999999999999999986543 9999999988888888
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 595 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
......+.++.|.+.|.+++.++.|=.|++++-.+.........+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77666899999999999999998887777777555443333333344567889999999999999999999888754
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.2e-26 Score=228.99 Aligned_cols=300 Identities=18% Similarity=0.240 Sum_probs=230.4
Q ss_pred cceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
..+-..+. |+..|.++++.|.|- -+++|+.|.+|++||......... .++. +.......|.+++
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~sl~ 221 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINSLQ 221 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccch-hhhc-------------cCcccccccceee
Confidence 34444455 678899999999999 578999999999999987653321 1221 1233456899999
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCccee---------eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELR---------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
||+.|..|++.+.....+|+|-+..+... ....-+||...++|.+|+|+.+. .++|++.||++++||+..
T Consensus 222 ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 222 YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCC
Confidence 99999999999999999999976544322 22345689999999999999888 699999999999999876
Q ss_pred Cc-eEEEec-----cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce---eEeeCCCC--ceEEEEECCCCCE
Q 002196 497 GT-KQYIFE-----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGH--SSTMMAYSADGAR 565 (954)
Q Consensus 497 ~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~--~v~~~~~s~~g~~ 565 (954)
-+ .+..++ +..-+++.++|++++ ..+++|+.||.|.+|+....... .....|.. .|+|+.||+||++
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY 378 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch
Confidence 54 233332 234567888887766 78999999999999998654432 22344444 8999999999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCe-EEEEEecCC-CCCeEEEEEeCCCCEEEEEE------CCCeEEEEECCCCceeEEEe
Q 002196 566 LFSCGTNKEGESYLVEWNESEGA-VKRTYHGLG-KRSVGVVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 637 (954)
|++-+.|+. +++||++..+ ++....+.. ...-+.++|||+.+.|++|. ..|.+++||..+...+..+.
T Consensus 379 LlSRg~D~t----LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 379 LLSRGFDDT----LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred hhhccCCCc----eeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 999887554 9999998764 444444332 22456789999999999986 35789999999999999887
Q ss_pred cCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 638 ~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
.. ...|..+.|+|.-+.|..|+.||.+++|=
T Consensus 455 i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 455 IS--TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CC--CceEEEEeecchhhheeeecCCCceEEEE
Confidence 66 55788999999888888899999999874
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=215.81 Aligned_cols=296 Identities=16% Similarity=0.248 Sum_probs=242.6
Q ss_pred cceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
..+++.+. |.+.|+.++-..... ++.+++.|.+.+||.+++|.++.+ +.||.+.|+++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 34555555 999999999988777 899999999999999999999876 889999999999
Q ss_pred EccCCCEEEEEEcCCEEEEEEe------eC--------Cc----------------------ce-eeeeeeecccCCEEE
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTY------HG--------GD----------------------EL-RNHLEIEAHVGSVND 468 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~------~~--------~~----------------------~~-~~~~~~~~h~~~v~~ 468 (954)
|++.+.++++++.|++..||.. .. ++ .+ .+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 00 01 123467899999999
Q ss_pred EEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC-ceeEe
Q 002196 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDY 547 (954)
Q Consensus 469 ~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~ 547 (954)
..|...|+ .+++++.|.+..+||+++|..+..+.||....+.++-+|.. .++++.+.|.+.++||++..- ....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999998 58999999999999999999999999999999999988876 799999999999999998533 34568
Q ss_pred eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe-EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 002196 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (954)
Q Consensus 548 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 626 (954)
.+|...|+++.|..+. .+++++. +.+|++||+++.+ ++.++.... +++.++.+..+..|+.--.+..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 8899999999998765 4666664 4569999998764 556665543 788899988888888888899999999
Q ss_pred CCCCceeEEEe---cCCCCCCcceEEECCCC--CEEEEEeCCCcEEEEEccCC
Q 002196 627 MDNVNLLASID---ADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 627 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~--~~l~s~~~dg~i~iwd~~~~ 674 (954)
++.... ..++ ..+|...|.|++|..+- .-|++++.|..+.-|.+...
T Consensus 427 lnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 965443 3332 23456679999998654 34778999999999998754
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-25 Score=210.65 Aligned_cols=244 Identities=19% Similarity=0.247 Sum_probs=206.6
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
.+..|.++|++++.+ +.++|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999985 8999999999999999999887666 67789999999999988642249999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
+.....++..+++|.+.|+.++++|++ ++.++.+.|+.++.||+-.++.-....... ....+.|+|.|.+++.++.+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc
Confidence 999999999999999999999999987 799999999999999998877666554433 44559999999998888754
Q ss_pred CCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEE--
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF-- 650 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 650 (954)
+ |-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||..+..+...+.+| ...|..+.+
T Consensus 190 ~-----i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~ 259 (362)
T KOG0294|consen 190 K-----IDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYT 259 (362)
T ss_pred E-----EEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEe
Confidence 3 8899888776655554432 46666664 5679999999999999999999999988877 668888874
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCC
Q 002196 651 NKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 567899999999999999998765
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.5e-27 Score=225.18 Aligned_cols=283 Identities=14% Similarity=0.214 Sum_probs=230.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
+|.+.|.|++=+|..-..+++|+.||.|+|||+...++..+ +..|.+.|..|++.. ..+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cce
Confidence 49999999999999856889999999999999998876654 678999999999988 778
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
++++.|.+|+.|.++.. ..+ ++. -...+..+.-+..+. .++|+|. .|.|||.....++..+.-....|.++
T Consensus 123 ~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred EEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 89999999999998863 333 333 234456666655555 5888886 69999999999999999888999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRT 592 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 592 (954)
.|+|... ..|++|+.|+.|.+||++...+...... ...-+.++|+|.+-.++++.. +..++.||++.- +++..
T Consensus 194 kfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhhhcccchh
Confidence 9999776 6888999999999999998877655432 335678999996666666654 455999999875 56667
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
+.+|.. .|..+.|+|.|+.+++||.|.+|+||..+.+........ .....|.|+.||.|.+++++||+|+.|++|...
T Consensus 268 ~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 268 HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 777766 899999999999999999999999999987765443322 224578999999999999999999999999875
Q ss_pred CC
Q 002196 673 DG 674 (954)
Q Consensus 673 ~~ 674 (954)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 44
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=222.06 Aligned_cols=252 Identities=21% Similarity=0.259 Sum_probs=212.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeee--------------eee-ecccCCEEEEEEecCCCce
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------------LEI-EAHVGSVNDLAFSYPNKQL 478 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~~~~s~~~~~~ 478 (954)
...|.-+|.|++++||+++.++++.+++|.=|++.+++..+.. ..- .+|...+.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4669999999999999999999999999999999887633110 001 37888999999999999
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999998665 5799999999999999998888888888999999999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
...-++.+-+++.| .++++|++... ....+.++.+ .+.+++|-. ...+++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgrD----rT~rlwKi~ee-sqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGRD----RTVRLWKIPEE-SQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEecccc----ceeEEEecccc-ceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 88888777777664 45999999433 3344566655 788998875 47899999999999999999998877643
Q ss_pred CC----------CCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCe
Q 002196 639 DG----------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIR 676 (954)
Q Consensus 639 ~~----------~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 676 (954)
.. +...|++++..|...++|+|+.+|.|++|.+.++.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 21 112688999999999999999999999999988843
No 103
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=242.86 Aligned_cols=245 Identities=21% Similarity=0.319 Sum_probs=213.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
.+...+.+..|. +.++++++.+.+|++|+..++..+.. .+.+|.+.|+++++..-+. .+++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 366788899988 77899999999999999999876652 3899999999999987444 69999999999999999
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
+|.+.+.+.+|.+.|.++...+ ..+++|+.|.+|++|++.++.....+.+|..+|.++..+ +.++++++.++
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~-- 351 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG-- 351 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc--
Confidence 9999999999999999997654 578889999999999999988888888899999999997 78999998755
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-ceeEEEecCCCCCCcceEEECCCC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEG 654 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~ 654 (954)
.|.+||+.+++++..+.+|.. .|.++.+.+. ..+++|+.|+.|++||+.+. +++.++..| ...+..+.+ .+
T Consensus 352 --~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 352 --TVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLLL--RD 423 (537)
T ss_pred --eEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC--ccccccccc--cc
Confidence 499999999999999999887 8999977654 89999999999999999999 899999877 445544444 57
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 655 ILLAVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 655 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
++|++++.|+.|++||..++ ++++.+.+
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~ 451 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEG-ECLRTLEG 451 (537)
T ss_pred ceeEeccccccEEEeecccC-ceeeeecc
Confidence 89999999999999999988 66666654
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=223.67 Aligned_cols=287 Identities=16% Similarity=0.249 Sum_probs=228.0
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEe
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 537 (954)
.+.+|...|.+++=+|..-. .+++|+.||.|++||+.+..+..++.+|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 57899999999999998733 589999999999999999999999999999999999876 4699999999999998
Q ss_pred CCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEE-EEE
Q 002196 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAA 616 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~ 616 (954)
++.. ....+. ....+..+.-+..+..++++|.+ |.+||.....++..+.-... .|.++.|+|-...+ +++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe~------i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGEQ------IDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCce------eeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 222222 23356666666677788888742 99999998889988887665 89999999987555 455
Q ss_pred ECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhcc
Q 002196 617 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI 696 (954)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 696 (954)
++|+.|.+||++.+.+++.+... ..-+.++|+|.+-.+++|++|..++.+|+......+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~--------------- 268 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH--------------- 268 (433)
T ss_pred ccCCceEEEecccCCccceeeee---ccccceecCccccceeeccccccceehhhhhhcccchhh---------------
Confidence 59999999999999999887653 245789999988889999999999999987553222211
Q ss_pred ccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCc
Q 002196 697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776 (954)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 776 (954)
.+|.
T Consensus 269 ----------------------------------------------------------------------------~dhv 272 (433)
T KOG0268|consen 269 ----------------------------------------------------------------------------KDHV 272 (433)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 1277
Q ss_pred cceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCC
Q 002196 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (954)
Q Consensus 777 ~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 856 (954)
+.|.+++|||-|+-+++++-|.+|+||....+ .+..... . .....|.|+.||.|.+
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-------------------~SRdiYh---t--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-------------------HSRDIYH---T--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCC-------------------cchhhhh---H--hhhheeeEEEEecccc
Confidence 88999999999999999999999999976532 1111111 0 1346789999999999
Q ss_pred eEEEec-CCeEEEEEcccccE
Q 002196 857 YVMSAS-GGKISLFNMMTFKT 876 (954)
Q Consensus 857 ~la~~s-dg~i~iwd~~~~~~ 876 (954)
++++|| |+.|++|.....+.
T Consensus 329 yi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEEecCCCcceeeeecchhhh
Confidence 999999 79999998654433
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=225.85 Aligned_cols=276 Identities=14% Similarity=0.187 Sum_probs=224.2
Q ss_pred CCceEEEEECCCCCE-EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 551 GHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
...|.+++|+|..-+ +++.+ ...+.+|+..+....+++..... .+++++|-.||+++++|...|.|+|||+.+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhHHhhcc-ceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 458999999996543 34333 22489999888877777766665 899999999999999999999999999877
Q ss_pred CceeEEEecCCCCCCcceEEECC-CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCC
Q 002196 630 VNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 708 (954)
...+..+..| ..++..+.|+| ++.++++|++|+.+++||+.+.. ....+.
T Consensus 100 r~iLR~~~ah--~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~-------------------------- 150 (487)
T KOG0310|consen 100 RVILRQLYAH--QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELS-------------------------- 150 (487)
T ss_pred HHHHHHHhhc--cCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEec--------------------------
Confidence 6677777766 66899999999 56788899999999999998762 221222
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCC
Q 002196 709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG 788 (954)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 788 (954)
+|...|++.+|+|-.
T Consensus 151 -----------------------------------------------------------------~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 151 -----------------------------------------------------------------GHTDYVRCGDISPAN 165 (487)
T ss_pred -----------------------------------------------------------------CCcceeEeeccccCC
Confidence 267778888888864
Q ss_pred -ceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEE
Q 002196 789 -LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKIS 867 (954)
Q Consensus 789 -~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~ 867 (954)
..+++|+-||+|++||+... +.... .+ +|..+|..+.+-|.|..+|+++...|+
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~--------------------~~~v~--el---nhg~pVe~vl~lpsgs~iasAgGn~vk 220 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSL--------------------TSRVV--EL---NHGCPVESVLALPSGSLIASAGGNSVK 220 (487)
T ss_pred CeEEEecCCCceEEEEEeccC--------------------CceeE--Ee---cCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence 46788889999999986531 10111 12 389999999999999999999999999
Q ss_pred EEEcccc-cEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEec
Q 002196 868 LFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 868 iwd~~~~-~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
|||+.+| +.+..+..|...|||+++.. +++.|.+|+-|+.|++||+.+-+.+..+. -.++|-+++.|||++.++.|.
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEec
Confidence 9999854 55555555999999999999 89999999999999999999899998887 568999999999999999999
Q ss_pred CCcceec
Q 002196 947 ADSQVRN 953 (954)
Q Consensus 947 ~Dg~I~i 953 (954)
.||.+-+
T Consensus 299 snGlv~~ 305 (487)
T KOG0310|consen 299 SNGLVSI 305 (487)
T ss_pred ccceeee
Confidence 9997643
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.3e-25 Score=207.16 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=194.3
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 415 ~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
......|.+++||| ...++++++.|++||+|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34668999999999 566777999999999999987422222 24567999999999999998 689999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.++ .+..+..|.++|..+.|-+..+...|+|||.|++|+.||.+...+...+..+. .++++..- ..+++++..++
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata~r 176 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATAER 176 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEecCC
Confidence 9999 45677789999999999887766789999999999999999887777766543 55555443 33555555443
Q ss_pred CCceEEEEEeCCCCeEE-EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC--ceeEEEecCCC-------CC
Q 002196 574 EGESYLVEWNESEGAVK-RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGG-------LQ 643 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 643 (954)
.|.+|+++.+... +.....-...++++++.++....+.|+-+|.+.|..+..+ +.-..++.|.. ..
T Consensus 177 ----~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 177 ----HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ----cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 4999999776433 2333333447889999999888899999999999998876 33334444431 23
Q ss_pred CcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 644 ASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 644 ~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5789999998889999999999999997554
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.4e-25 Score=208.08 Aligned_cols=308 Identities=15% Similarity=0.166 Sum_probs=203.7
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeee-eeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
..+++|...|++++||.||++||+++.|++|+||+++........ ....-.-+..+.+.|+||-+. +++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce-EEEEEccCCEEE
Confidence 348899999999999999999999999999999999764321100 001112235688999999887 566777778999
Q ss_pred EEECCC---CceEE---------EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 491 VWDAVT---GTKQY---------IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 491 iwd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
+|.+.. |.... --+.|...|..+-.. +++.++++++.|..|.+|+++ ++...........-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 997643 22111 112355556555544 455899999999999999998 455555555455566777
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
.||+|+++++++...+ +.+|. +.|..+|.+ . +..+.+..
T Consensus 236 vSP~GRFia~~gFTpD----VkVwE--------------------~~f~kdG~f---------------q--ev~rvf~L 274 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPD----VKVWE--------------------PIFTKDGTF---------------Q--EVKRVFSL 274 (420)
T ss_pred eCCCCcEEEEecCCCC----ceEEE--------------------EEeccCcch---------------h--hhhhhhee
Confidence 8888888888876544 66665 224333321 0 11222333
Q ss_pred CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccc
Q 002196 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718 (954)
Q Consensus 639 ~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (954)
.+|...|..++|+++...+++.+.||.+++||..-..+ .+...
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~-----~~qDp-------------------------------- 317 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE-----AGQDP-------------------------------- 317 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe-----cCCCc--------------------------------
Confidence 35577999999999999999999999999999753210 00000
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCC
Q 002196 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA 798 (954)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg 798 (954)
..++... .+.....+....++.+|+|+.|+++. ..
T Consensus 318 ------------------------------k~Lk~g~--------------~pl~aag~~p~RL~lsP~g~~lA~s~-gs 352 (420)
T KOG2096|consen 318 ------------------------------KILKEGS--------------APLHAAGSEPVRLELSPSGDSLAVSF-GS 352 (420)
T ss_pred ------------------------------hHhhcCC--------------cchhhcCCCceEEEeCCCCcEEEeec-CC
Confidence 0000000 01111223334789999999666554 44
Q ss_pred eEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEE
Q 002196 799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN 870 (954)
Q Consensus 799 ~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd 870 (954)
.+++|.. ++|+.....-. .|...|.+++|+++|+++|+++|..+++..
T Consensus 353 ~l~~~~s----------------------e~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 353 DLKVFAS----------------------EDGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ceEEEEc----------------------ccCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 6776643 33333322222 289999999999999999999999999886
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=5.8e-25 Score=229.80 Aligned_cols=282 Identities=15% Similarity=0.293 Sum_probs=236.3
Q ss_pred ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEE-EE
Q 002196 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR-VM 425 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 425 (954)
++.+.++ |...|..+++.+.. .+++++.||++++|+-..++.+.. ..+.+|.+-|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccce
Confidence 3445555 99999999988876 578999999999999877765542 235678788877 88
Q ss_pred Ecc-CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 426 WSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 426 ~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
+-+ ++-.|++|+.|++|.+|...+..++. .+.+|...|.++....++. +++||.|.++++|- .+++...+.
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~ 137 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ 137 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence 886 55579999999999999999988776 8999999999999877775 89999999999995 466777899
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
+|+..|+++...+.. .++|||.|.+|++|.- ++....+.+|...|..+++-+++. +++++. ++.|+.|++
T Consensus 138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~ 207 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL 207 (745)
T ss_pred CcchheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec
Confidence 999999999887654 7999999999999954 567778889999999999998765 556655 445999998
Q ss_pred CCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
+|+.+..+.+|.. -++++...+++..++++++|++++||+.. ++.+.+..+ ...|.++.+-++|.+ ++|+.||
T Consensus 208 -~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgDI-vvg~SDG 280 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGDI-VVGGSDG 280 (745)
T ss_pred -cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCCE-EEeccCc
Confidence 7899999999988 89999988888999999999999999976 788888766 347889988888865 5688899
Q ss_pred cEEEEEccC
Q 002196 665 GIKILANAD 673 (954)
Q Consensus 665 ~i~iwd~~~ 673 (954)
.||||....
T Consensus 281 ~VrVfT~~k 289 (745)
T KOG0301|consen 281 RVRVFTVDK 289 (745)
T ss_pred eEEEEEecc
Confidence 999998764
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=214.69 Aligned_cols=240 Identities=17% Similarity=0.275 Sum_probs=213.2
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
...+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|++|.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeeccccc
Confidence 4578888888888899999999999999999988777 8999999999999999998 6899999999999999888
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--CCceEEEEECCCCCEEEEEEeCCCC
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
........|..+|+.+..++++ .||++++.|++..+.|++++......... .-.+++.+|+|||..+.++..|
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d--- 368 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD--- 368 (506)
T ss_pred cCccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC---
Confidence 8888889999999999998877 79999999999999999998877766553 3368999999999998888764
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (954)
+.+++||+.++..+..|.+|.+ +|..++|+.+|-+++++++|+.|++||++..+.+.++...... .+.++.|.+.|.
T Consensus 369 -~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt 445 (506)
T KOG0289|consen 369 -GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGT 445 (506)
T ss_pred -ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCC
Confidence 4599999999999999999887 9999999999999999999999999999999988888776543 799999999999
Q ss_pred EEEEEeCCCcEEEEE
Q 002196 656 LLAVSTNDNGIKILA 670 (954)
Q Consensus 656 ~l~s~~~dg~i~iwd 670 (954)
+|+.++.|=.|++++
T Consensus 446 ~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICK 460 (506)
T ss_pred eEEeecceeEEEEEe
Confidence 999997765555554
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=9.1e-25 Score=241.24 Aligned_cols=294 Identities=15% Similarity=0.223 Sum_probs=233.9
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEE--cCCEEEEEEeeCC--------c-ceeeeeeeecccCCEEEEEEecCCCceEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAY--SKHIVHLYTYHGG--------D-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT 482 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~--~dg~i~iwd~~~~--------~-~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s 482 (954)
...+...|.++..+|||..+|+|+ .|+.++||+.+.- . ..+.......|.+.|+|+.|+|||+ +|++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~--~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS--YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC--eEee
Confidence 344567899999999999999999 8999999987531 1 1222335678999999999999999 7999
Q ss_pred EcCCCeEEEEECCC------------------CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce
Q 002196 483 CGEDRVIKVWDAVT------------------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR 544 (954)
Q Consensus 483 ~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 544 (954)
|+.|+.|.||+... .+....+.+|.+.|..++|+|++ .++++++.|++|.+|+..+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceee
Confidence 99999999998662 12567889999999999999855 89999999999999999999888
Q ss_pred eEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC-----CCeEEEEEeCCCCEEEEEE--
Q 002196 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK-----RSVGVVQFDTTKNRFLAAG-- 617 (954)
Q Consensus 545 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-- 617 (954)
..+..|...|-.+.|.|-|+++++-+.|+ .|++|...+....+.+..+-+ ..+..+.|+|||.+|++..
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDr----tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDR----TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCc----eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 89999999999999999999999987654 599999888777776655422 2466789999999999864
Q ss_pred --CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC-----CC------------EEEEEeCCCcEEEEEccCCCeeE
Q 002196 618 --DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE-----GI------------LLAVSTNDNGIKILANADGIRLL 678 (954)
Q Consensus 618 --~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~ 678 (954)
.-.++.|.+..+.+.-..+-+| ..++.+++|+|. .. .+|+|+.|+.|-||..... +++
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl 317 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPL 317 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-Cch
Confidence 3347888888777766677665 668999999982 11 5667777777777765433 111
Q ss_pred EEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 679 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
-.. .
T Consensus 318 ~vi------------------------------------------------------------------------~---- 321 (942)
T KOG0973|consen 318 FVI------------------------------------------------------------------------H---- 321 (942)
T ss_pred hhh------------------------------------------------------------------------h----
Confidence 000 0
Q ss_pred ccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCC
Q 002196 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN 808 (954)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~ 808 (954)
+-....|..++|+|||..|++++.||+|.+..++..
T Consensus 322 --------------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 322 --------------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --------------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 113567899999999999999999999999998765
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=204.28 Aligned_cols=305 Identities=14% Similarity=0.212 Sum_probs=218.7
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee----EeeCCCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
..+++|...|++++|+.+ |++|++++.|+.|++|+++...... .....-...+.+.|+||.+-+++....++
T Consensus 80 ~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~-- 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN-- 155 (420)
T ss_pred hhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC--
Confidence 357899999999999754 4899999999999999998754321 22233346788999999988877765443
Q ss_pred eEEEEEeCCC---CeEEE--------EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 577 SYLVEWNESE---GAVKR--------TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 577 ~~i~iwd~~~---~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
.+++|.+.. |.... .|...+.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-
T Consensus 156 -~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn--q~~n 231 (420)
T KOG2096|consen 156 -KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN--QSSN 231 (420)
T ss_pred -EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc--cccc
Confidence 477776532 21111 1111122245556666778999999999999999998 8998888754 4456
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccc
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (954)
+..+.||+|+++++++..-.|++|++--+ -+|.-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~------kdG~f---------------------------------------- 265 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFT------KDGTF---------------------------------------- 265 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEec------cCcch----------------------------------------
Confidence 78999999999999999999999985321 00000
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeec
Q 002196 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKW 805 (954)
Q Consensus 726 ~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~ 805 (954)
..-.+++.+ .||...|..++||++..++++.+.||++++||.
T Consensus 266 ----------------------qev~rvf~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 266 ----------------------QEVKRVFSL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ----------------------hhhhhhhee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 011233333 359999999999999999999999999999997
Q ss_pred cCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeC-CCC
Q 002196 806 PRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM-PPP 884 (954)
Q Consensus 806 ~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~-~h~ 884 (954)
+-. +......++ ++.+. ..+. +.......+++||.|+.||.+....++++...+|+..-+++ .|.
T Consensus 308 dVr-------Y~~~qDpk~--Lk~g~---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 308 DVR-------YEAGQDPKI--LKEGS---APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred cce-------EecCCCchH--hhcCC---cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence 532 111110000 01110 1111 12333448999999999999989999999999988877765 588
Q ss_pred CCeeEEEecCCCCceEEEEecCccEEEEe
Q 002196 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~dg~i~iwd 913 (954)
..|++++|++ +|+++|+++ |..+++..
T Consensus 374 ~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 374 TTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 8999999999 999999886 77888876
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.1e-25 Score=228.36 Aligned_cols=288 Identities=20% Similarity=0.241 Sum_probs=234.4
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
.+..++.+.++|.+|+.||.|++|++........ .+ ....+..|...|+.++...+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5666666666899999999999999876433211 01 1122567999999999999999999999999
Q ss_pred EEEEEEeeCCcceeeeeeeecccCCEEEEEE-ecCCCceEEEEEcCCCeEEEEECCCCc--eEE--------Eec-cCCC
Q 002196 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-SYPNKQLSVVTCGEDRVIKVWDAVTGT--KQY--------IFE-GHES 508 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~--------~~~-~~~~ 508 (954)
+|++|+...+. ..+..++..|...|.|++. .++.. ++++||.|+.|.+||+.++. .+. .+. ++..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998774 2233378899999999999 66666 79999999999999999872 232 223 7888
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
.|++++.++.+ ..+++|+..+.+++||.++.+....+.+|...|..+..++||..+++++.|+ +|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg----tIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG----TIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc----eEEeeeccccc
Confidence 99999877655 7899999999999999999999999999999999999999999999998755 59999999999
Q ss_pred EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEE
Q 002196 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (954)
Q Consensus 589 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 668 (954)
++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+++......+-.. ..+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeecccccee
Confidence 9999999988 6999999999999999999999999999985333333222 336777777765545567788999999
Q ss_pred EEccC
Q 002196 669 LANAD 673 (954)
Q Consensus 669 wd~~~ 673 (954)
|...-
T Consensus 324 W~~~~ 328 (735)
T KOG0308|consen 324 WKLEP 328 (735)
T ss_pred cCCcc
Confidence 97643
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.7e-24 Score=203.15 Aligned_cols=271 Identities=18% Similarity=0.267 Sum_probs=214.6
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..+.|..|.|+|.+..| ++++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 45689999999998855 555699999999998875443 235899999999987 56789
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 514 (954)
+|+.||.|+.+|+.++... .+..|..+|.|+.+++-.. .+++||.|++|++||.+.......+.. ...|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEecccccccccccc-CceEEEEe
Confidence 9999999999999998755 4778999999999998766 699999999999999988666666653 44788876
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC--eEE
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVK 590 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~ 590 (954)
.. ++.|+.|+.|..+.+||+++.......... ...+.++++-|++.-.++++.+| ...+-.+|.... ...
T Consensus 143 v~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG--RVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 143 VS----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG--RVAVEYFDDSEEAQSKK 216 (323)
T ss_pred cc----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc--eEEEEccCCchHHhhhc
Confidence 54 268999999999999999987765533222 33789999999887777777644 434444554411 233
Q ss_pred EEEecCCC--------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 591 RTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 591 ~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
..|+.|.. .+|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||+++.
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 44555532 36889999999999999999999999999999988888654 557999999999999999874
No 114
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=9.4e-24 Score=232.63 Aligned_cols=228 Identities=16% Similarity=0.221 Sum_probs=181.3
Q ss_pred EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc--------eEEEeccCC
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--------KQYIFEGHE 507 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~ 507 (954)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+... +|++|+.|++|++||+.++. ++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 5667889999987654333 78899999999999997433 79999999999999998642 345678999
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
..|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.++ .|++||++++
T Consensus 126 ~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~----~IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK----HMHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC----EEEEEECCCC
Confidence 9999999998763 456899999999999999887666554 456899999999999999887544 4999999999
Q ss_pred eEEEEEecCCCCCeEE-----EEEeCCCCEEEEEECCC----eEEEEECCC-CceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 588 AVKRTYHGLGKRSVGV-----VQFDTTKNRFLAAGDEF----MIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
+.+..+.+|.+ .+.. ..|++++.++++++.|+ .|+|||+++ ++++..+..+.+...+......++|.++
T Consensus 200 ~~i~tl~gH~g-~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 200 EIASSFHIHDG-GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred cEEEEEecccC-CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999998876 3322 23568889999988664 799999995 6677766655444333334445568899
Q ss_pred EEEeCCCcEEEEEccCC
Q 002196 658 AVSTNDNGIKILANADG 674 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~ 674 (954)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=6.7e-25 Score=219.97 Aligned_cols=293 Identities=15% Similarity=0.201 Sum_probs=233.9
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+.+.+|.|+.-|.++.+|...+ .+.||+. |.|+|||+....... . ..+.. .....+-|.++...
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--P-----------vsqLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--P-----------VSQLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--c-----------ccccc-ccCcccceeeeEec
Confidence 3467788999999999999998 5677764 889999987642110 0 00101 12245779999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
|||+.|++|+.-.++.|||+...... ....+..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|++|.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 99999999999999999999865422 1113444445678899999999 78999999999999999999999999999
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
+.+.||.++.++ ..|.||+.|.+|+.||++.......... ...|.++.++|++.++++|-.+.. +.+.... +
T Consensus 552 DGascIdis~dG--tklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~----vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISKDG--TKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSN----VEVLHTS-K 623 (705)
T ss_pred CCceeEEecCCC--ceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccCc----EEEEecC-C
Confidence 999999988655 7899999999999999998776655443 348999999999999999876432 5554433 3
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEE
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 667 (954)
.....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+...+. ...|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 34455556655 899999999999999999999999999998887776643 45799999999999999999999888
Q ss_pred EEEc
Q 002196 668 ILAN 671 (954)
Q Consensus 668 iwd~ 671 (954)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9e-24 Score=199.86 Aligned_cols=245 Identities=17% Similarity=0.273 Sum_probs=212.7
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.||...|+.++.......+.+++.|.+.+||.+++|.++. .+.||.+.|++++|++.+. ++++++.|++..||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~---~Y~GH~GSVNsikfh~s~~--L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA---TYTGHTGSVNSIKFHNSGL--LLLTASGDETAHIWK 218 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecccccee---eecccccceeeEEeccccc--eEEEccCCcchHHHH
Confidence 78999999999998888899999999999999999999887 7899999999999999888 799999999999996
Q ss_pred C------CC-----C-----------------------------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeE
Q 002196 494 A------VT-----G-----------------------------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKI 533 (954)
Q Consensus 494 ~------~~-----~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (954)
. .. + .++..+.+|.+.|.+..|...+ +.+++++.|.+.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccc
Confidence 2 11 0 1345678999999998887655 789999999999
Q ss_pred EEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCCCE
Q 002196 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNR 612 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 612 (954)
.+||++++.....+.+|....+.++-+|..+++++.+.| .+.++||.+.. ..+..|++|.. .|+++.|..+ ..
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD----tTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~d-d~ 370 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD----TTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTD-DR 370 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccC----ceeEeccchhhcceeeeeccccc-ceeEEEEecC-Cc
Confidence 999999999999999999999999999999998888764 45999999854 46778999988 8999999865 57
Q ss_pred EEEEECCCeEEEEECCCC-ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 613 FLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 613 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+++|+.|.+|++||+++. .++.++.. ..+++.++.+..+++++.--++..|++||++..
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 899999999999999885 46677764 347889999998889999999999999998754
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.9e-23 Score=183.63 Aligned_cols=278 Identities=12% Similarity=0.196 Sum_probs=216.3
Q ss_pred cceeeeeeCCCCCcceeecCCCC---------------------CcceEEE--ecCCCCeeEEEEcCCCCeEEEEEEcCC
Q 002196 323 VNILPVAYTPQSLGQSSYSTDDL---------------------PKTVVMT--LNQGSAVKSMDFHPVQQILLVVGTNMG 379 (954)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~~---------------------~~~~~~~--~~h~~~V~~~~~sp~g~~ll~~g~~dg 379 (954)
..|-+|+|.|.|...|+.+..++ |..++.. -.|.+.|+|.+|||+|+ ++++|+.|.
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk 111 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDK 111 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCc
Confidence 34668999999998888876653 2222222 23889999999999999 999999999
Q ss_pred eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC----CCEEEEEEc-CCEEEEEEeeCCccee
Q 002196 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTLFGVAYS-KHIVHLYTYHGGDELR 454 (954)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l~s~~~-dg~i~iwd~~~~~~~~ 454 (954)
+|++.-........+. ..-.+.-|.+.|..++|-.+ |..|++++. |..|++-|...|+.+.
T Consensus 112 ~ik~l~fn~dt~~~~g--------------~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATG--------------HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred eEEEEecccccccccC--------------cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 9999776544332210 11115669999999999764 557777643 5677777888887766
Q ss_pred eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc--C-----CCCeEEEeeeccCCccEEEEE
Q 002196 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--H-----ESPVYSICPHHKENIQFIFST 527 (954)
Q Consensus 455 ~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~l~s~ 527 (954)
.+.+|++.|.++- +-++- ++++|+.|.+|++||++-..++.++.. | ...|.++++.|.+ .+|++|
T Consensus 178 ---a~sghtghilaly-swn~~--m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg 249 (350)
T KOG0641|consen 178 ---ALSGHTGHILALY-SWNGA--MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASG 249 (350)
T ss_pred ---eecCCcccEEEEE-EecCc--EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc--ceeeec
Confidence 7899999998763 23466 799999999999999998888877642 2 3568888887766 899999
Q ss_pred ecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC----eEEEEEecCCCCCeEE
Q 002196 528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG----AVKRTYHGLGKRSVGV 603 (954)
Q Consensus 528 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~ 603 (954)
-.|....+||++.+..+..+..|...|.++.|+|...++++++.|.. |++-|+... -++.....|.. .+..
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~----ikltdlqgdla~el~~~vv~ehkd-k~i~ 324 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK----IKLTDLQGDLAHELPIMVVAEHKD-KAIQ 324 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce----EEEeecccchhhcCceEEEEeccC-ceEE
Confidence 99999999999999999999999999999999999999999987554 888887632 22333444555 6677
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECC
Q 002196 604 VQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 604 ~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
+.|+|..-.+++.+.|.++.+|-+.
T Consensus 325 ~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecCccceeeeccCcceEEEeccC
Confidence 8999999899999999999999764
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=198.07 Aligned_cols=253 Identities=18% Similarity=0.262 Sum_probs=207.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec--CCCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~~dg~i~i 491 (954)
...|...|..+...--|+.||+++.|++|+|+.++.+.....+.+|.+|.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 467999999999888999999999999999999998776666778999999999999986 566 8999999999999
Q ss_pred EECCCCc--eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCceEEEEECCC---C
Q 002196 492 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSAD---G 563 (954)
Q Consensus 492 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~---g 563 (954)
|.-..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9977774 345677899999999999999999999999999999999887622 2345567778999999986 4
Q ss_pred -----------CEEEEEEeCCCCceEEEEEeCCCCe--EEEEEecCCCCCeEEEEEeCCC----CEEEEEECCCeEEEEE
Q 002196 564 -----------ARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFMIKFWD 626 (954)
Q Consensus 564 -----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd 626 (954)
+.|++++.|. .+++|+..+++ ..+++.+|.+ .|+.++|.|.- .+|++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn----~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDN----LVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCCcc----ceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 5688887644 49999988763 4455788877 89999999964 5899999999999998
Q ss_pred CCCCce-eEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 627 MDNVNL-LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 627 ~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.+.... -...-.+.-...+..+.||..|.+|++++.|+.|.+|.-..
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 764211 11111122245789999999999999999999999997543
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.2e-23 Score=219.95 Aligned_cols=278 Identities=15% Similarity=0.211 Sum_probs=224.9
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcce-EEECC-CCCEEEEEeCCCc
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC-IRFNK-EGILLAVSTNDNG 665 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~s~-~~~~l~s~~~dg~ 665 (954)
++.+.+.+|.. .+..+++.+ +..++++|.||++++|+-..++.+......++.+.|.. +++-+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45567788877 777777654 45899999999999999877776665444444555655 77775 5567999999999
Q ss_pred EEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccc
Q 002196 666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (954)
Q Consensus 666 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~ 745 (954)
|.+|..... .++..+.+|...|-.+... . ...+++|
T Consensus 83 i~v~~~~~~-~P~~~LkgH~snVC~ls~~------------------------------------------~-~~~~iSg 118 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTLKGHKSNVCSLSIG------------------------------------------E-DGTLISG 118 (745)
T ss_pred EEEEecCCC-CchhhhhccccceeeeecC------------------------------------------C-cCceEec
Confidence 999999888 8899999999876654221 1 2237999
Q ss_pred cccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCcccc
Q 002196 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (954)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~ 825 (954)
++|.++++|........ ..+|...|.++++-|++ .+++|+.|++|++|.-
T Consensus 119 SWD~TakvW~~~~l~~~---------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-------------------- 168 (745)
T KOG0301|consen 119 SWDSTAKVWRIGELVYS---------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-------------------- 168 (745)
T ss_pred ccccceEEecchhhhcc---------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--------------------
Confidence 99999999998642211 34699999999999999 6999999999999951
Q ss_pred CCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEec
Q 002196 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (954)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~ 905 (954)
++.+ ..+.+ |.+.|+.+++-+++.++-++.||.|+.|++ +|+++.++.+|...|.++...+ ++..++++++
T Consensus 169 ----~~~l-~tf~g--HtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Ivs~gE 239 (745)
T KOG0301|consen 169 ----GTLL-KTFSG--HTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIVSTGE 239 (745)
T ss_pred ----Cchh-hhhcc--chhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEEEecC
Confidence 2222 23666 999999999998877776666999999999 7999999999999999999888 7889999999
Q ss_pred CccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 906 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 906 dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.|||
T Consensus 240 DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 240 DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred CceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence 9999999987 88888886666899999988875 788999999997
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=196.92 Aligned_cols=295 Identities=14% Similarity=0.192 Sum_probs=223.3
Q ss_pred CCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
.|.++..++.+.. ..|+.|++.|. +||+|+.||.|.|||+.+-..- ..+.+|..+|+++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEE
Confidence 4567778888777 89999999998 8999999999999999886533 2478999999999
Q ss_pred EEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 425 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
+||+||+.|++++.|..|.+||+..|.+++.. ....+|+.+.|+|...+. ++..-.+..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCe-EEEEEecCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999877633 256789999999987774 444444445556665543211 121
Q ss_pred c-CCCCe----EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC-CceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 505 G-HESPV----YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 505 ~-~~~~v----~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
. ..+.. .+..|. ..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++..+. +..
T Consensus 146 ~d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCcccccccccccccc--CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 1 11111 111233 445899999999999999999988887776655 68899999999999999876 446
Q ss_pred EEEEeCCC-------CeE--EEEEecC-CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 579 LVEWNESE-------GAV--KRTYHGL-GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 579 i~iwd~~~-------~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
|+.|+++. +++ .++++.- +...-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence 99998762 111 1122110 112455789999999999887 556899999999999999987643 35678
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 648 IRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 648 v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.|+|-...+++- ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 9999988888887 6789999987543
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.9e-23 Score=196.29 Aligned_cols=270 Identities=18% Similarity=0.269 Sum_probs=219.3
Q ss_pred EEEEEcCCEEEEEEeeCCc---------ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 433 FGVAYSKHIVHLYTYHGGD---------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
|++|+....|.=+++.-.. .+.+...+..|.+.+++++.+ +. ++++||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 5667777766666553221 122344678899999999996 77 7999999999999999999999999
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
-.|.+.|+++.|.+......|++|+.||.|.+|+.........+..|.+.|+.++.+|.|+..++.+.| ..++.||
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D----~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD----QVLRTWN 155 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCC----ceeeeeh
Confidence 999999999999887654589999999999999999998888999999999999999999999998864 4599999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
+-+|+.-....-.+ ....+.|+|.|.+++.++.+ .|-+|.+.+......+..+ ..+.|+.|. ++..|++|++|
T Consensus 156 LV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred hhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCC
Confidence 99987665555433 34558999999998888865 6899999988777776543 346666665 56688899999
Q ss_pred CcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccc
Q 002196 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 743 (954)
Q Consensus 664 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 743 (954)
+.|.+||..+. .+...+.+|...|..+.... .+++.+++
T Consensus 229 ~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~----------------------------------------~~~~~~lv 267 (362)
T KOG0294|consen 229 EWISLKDTDSD-TPLTEFLAHENRVKDIASYT----------------------------------------NPEHEYLV 267 (362)
T ss_pred ceEEEeccCCC-ccceeeecchhheeeeEEEe----------------------------------------cCCceEEE
Confidence 99999999886 88889999998887653221 13467899
Q ss_pred ccccccccccccccc
Q 002196 744 ADEAVEKSRIWKLTE 758 (954)
Q Consensus 744 s~~~d~~i~iw~~~~ 758 (954)
+++.||.|++||+..
T Consensus 268 TaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 268 TASSDGFIKVWDIDM 282 (362)
T ss_pred EeccCceEEEEEccc
Confidence 999999999999975
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.2e-23 Score=210.36 Aligned_cols=265 Identities=14% Similarity=0.271 Sum_probs=212.2
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+....+.|.+.|+.+.+-|....++|+++..+.|.|||..+..-..... ..+. ..-.+.+|...=+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~~---Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GECR---PDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccCC---CceEEEeecccccccccc
Confidence 4456677999999999999999999999999999999987654322100 0011 112367899888899999
Q ss_pred cC-CCEEEEEEcCCEEEEEEeeCCcc----eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC--CCceE
Q 002196 428 PD-GTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV--TGTKQ 500 (954)
Q Consensus 428 pd-g~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~--~~~~~ 500 (954)
+. .-+|++++.|++|++||+..... +.....+.+|...|..++|++-... +|.+++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 95 45889999999999999975433 4555678999999999999998887 69999999999999999 56677
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCceEEEEECCCCCEEEE-EEeCCCCceE
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFS-CGTNKEGESY 578 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~~~~~~ 578 (954)
....+|.+.|+|++|+|..+ ..|+|||.|++|.+||+++... ...+..|...|..+.|+|....+++ ++. ++.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r 340 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR 340 (422)
T ss_pred ccccccCCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence 78889999999999999764 7999999999999999998765 4568888899999999998765554 443 455
Q ss_pred EEEEeCCCC--------------eEEEEEecCCCCCeEEEEEeCCCCEE-EEEECCCeEEEEECC
Q 002196 579 LVEWNESEG--------------AVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628 (954)
Q Consensus 579 i~iwd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~ 628 (954)
+.+||+..- +++..-.||.. .|..+.|+|...++ ++.++|+.+.||.+.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999998642 22344456655 89999999998765 556799999999976
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.5e-23 Score=192.93 Aligned_cols=302 Identities=14% Similarity=0.238 Sum_probs=228.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (954)
.|.+.|+++...+...+++++|+.||.|.|||++.........+. .+ ..|. .......+|.-.|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AK-HKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eh-eeee--ccccCCccceeeeeeeEEeeecCce
Confidence 488999999999987779999999999999999875421110000 00 0011 11223567999999999999 7778
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCC-ceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
+.+++.|.+++|||..+-+... .+. -.+.|.+-+|||-.. ..++++|..|-.|++-|+.+|.+.+++.+|...|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8999999999999999866443 332 556788888988643 33678888999999999999999999999999999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCC-CceeEe--------------eCCCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDY--------------DAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.++.++|+.+|.++++++.+.
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~--- 268 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD--- 268 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc---
Confidence 999999876 67899999999999999865 333222 23445789999999999999998754
Q ss_pred eEEEEEeCCCCeEEEE-Ee--cCCC--CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 577 SYLVEWNESEGAVKRT-YH--GLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~-~~--~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
.+++|+..+|+-... +- .+.. ..-..+. +.+...++.--.++.+.++++-.+..+..+..| ...|.|.++.
T Consensus 269 -r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~~ 344 (397)
T KOG4283|consen 269 -RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAYR 344 (397)
T ss_pred -ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEeec
Confidence 499999988753221 11 1111 0111122 333444555556789999999999999999987 5589999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 002196 652 KEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~ 671 (954)
|+-+...++..|+.|..|-+
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999976
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-22 Score=192.86 Aligned_cols=241 Identities=17% Similarity=0.131 Sum_probs=188.7
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
....|+.+.|+|.++.|++++.||++++||+....... .-.|..++.+++|.++.. +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46889999999999999999999999999998874332 335899999999998665 89999999999999988
Q ss_pred CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
+... .+..|..+|.++...+.. ..+++||.|++|++||.+.......+.. ...|.++.. .|..|++++.+.
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r--- 155 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDR--- 155 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCc---
Confidence 8754 445699999999998665 5799999999999999997444444433 337888776 466788876543
Q ss_pred eEEEEEeCCCCeEEEEE-ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----ceeEEEecCC-------CCCC
Q 002196 577 SYLVEWNESEGAVKRTY-HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADG-------GLQA 644 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~-------~~~~ 644 (954)
.+.+||+++.....+. ...-...++++++-|++.-+++++-||.|.+=.++.. +.-..++.|. ...+
T Consensus 156 -~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 156 -KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred -eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 4999999986543322 2222347889999999889999999999988666554 2333343331 1236
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
|++++|+|--..||+|+.||.|.+||+.+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcch
Confidence 899999999889999999999999999776
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=207.05 Aligned_cols=290 Identities=13% Similarity=0.233 Sum_probs=227.7
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCCC-EEEEEEeCCCCceEEEEE
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iw 582 (954)
..+.|+++.|+|.. ..+++++.|+++++|.++.... +..+.....++.+.+|.|+|. .+++++. ..+++.|
T Consensus 212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysy 285 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSY 285 (514)
T ss_pred CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEe
Confidence 35679999999987 7999999999999998875443 344555667999999999999 6666654 5579999
Q ss_pred eCCCCeEEE--EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE
Q 002196 583 NESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (954)
Q Consensus 583 d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 660 (954)
|+.+.+... ...++....+.....++++++|+..|..|.|.+....+++.+..+... +.|..++|+.|++.|+++
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLAS 362 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEE
Confidence 998876543 344555446778889999999999999999999999999999999764 468999999999999999
Q ss_pred eCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCc
Q 002196 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (954)
Q Consensus 661 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (954)
+.+|.|.+||+... .+++.+...
T Consensus 363 ~~~GeV~v~nl~~~-~~~~rf~D~-------------------------------------------------------- 385 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN-SCLHRFVDD-------------------------------------------------------- 385 (514)
T ss_pred cCCceEEEEecCCc-ceEEEEeec--------------------------------------------------------
Confidence 99999999999877 444433210
Q ss_pred ccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCC
Q 002196 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 820 (954)
Q Consensus 741 ~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~ 820 (954)
| .-.-++++.|++|.++++|+..|.|-|||.+..-.
T Consensus 386 --------G--------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~---------- 421 (514)
T KOG2055|consen 386 --------G--------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA---------- 421 (514)
T ss_pred --------C--------------------------ccceeeeeecCCCceEEeccCcceEEEeccchhhc----------
Confidence 0 11235688899999999999999999998653211
Q ss_pred CccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec---CCeEEEEEcccccEEEeeCCCC---CCeeEEEecC
Q 002196 821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPP---PAATFLAFHP 894 (954)
Q Consensus 821 ~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~sp 894 (954)
-...+++.. +. .-...|+++.|+||++.||.+| ...+++--+.+......++... +.|+||+|||
T Consensus 422 ------s~~PkPik~-~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 422 ------STNPKPIKT-VD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred ------cCCCCchhh-hh--hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 011112211 11 1456899999999999999998 4779999999888777776443 4599999999
Q ss_pred CCCceEEEEecCccEEEEecc
Q 002196 895 QDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 895 ~d~~~lasgs~dg~i~iwd~~ 915 (954)
.+-++|.|..+|.|.+|.+.
T Consensus 493 -~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 -NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCceEEeecCCCceeeEeec
Confidence 88899999999999999874
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.7e-23 Score=205.59 Aligned_cols=253 Identities=17% Similarity=0.272 Sum_probs=203.4
Q ss_pred cCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcce-------eeeeeeecccCCEEEEEEecCCCceEEEEEcC
Q 002196 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL-------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~ 485 (954)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||....... ++...+.+|.+.-+.++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3469999999999995 556677788899999998653222 223368899998889999998776 6999999
Q ss_pred CCeEEEEECCCCc-------eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC--CCCceeEeeCCCCceEE
Q 002196 486 DRVIKVWDAVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSSTM 556 (954)
Q Consensus 486 dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~ 556 (954)
|+.|++||+.... +...+.+|...|..++|++... ..+.+++.|+.+.+||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987543 3567889999999999999776 789999999999999999 45555667788889999
Q ss_pred EEECCCCCEE-EEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCcee
Q 002196 557 MAYSADGARL-FSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 557 ~~~s~~g~~l-~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
++|+|-+.++ ++++.| .+|.+||+++- .++.++.+|.. .|..+.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S~D----~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSAD----KTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccCC----CcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999976654 555544 45999999975 56788888887 99999999976 56677789999999998752222
Q ss_pred E------------EEecCCCCCCcceEEECCCCC-EEEEEeCCCcEEEEEccC
Q 002196 634 A------------SIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANAD 673 (954)
Q Consensus 634 ~------------~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iwd~~~ 673 (954)
+ .+...+|...|..+.|+|+.. .++++++|+.+.||.+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1 233446688999999999665 588899999999998864
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=206.64 Aligned_cols=288 Identities=14% Similarity=0.214 Sum_probs=233.3
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC-EEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LFG 434 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~ 434 (954)
.+.|++|.|+|..+ +|.+++.||+++||.+.........+ +.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 47899999999998 88899999999999987654332111 112357999999999999 899
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeeccc-CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
+++.....+.||+.+.+..+ ...+.++. ..+.....+++++ +|+..|..|.|.+....+++.+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999877543 22344444 4577888999999 79999999999999999999998887 56789999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC-ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC------
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE------ 586 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~------ 586 (954)
+|+.+ ++.|+.++.+|.|.+||++...+...+...+. .-++++.+++|.++++|+. .+.|.|||..+
T Consensus 351 ~fsSd--sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSSD--SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEecC--CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 99844 48899999999999999999877777766554 5578888999999999875 44689999653
Q ss_pred CeEEEEEecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecC-CCCCCcceEEECCCCCEEEEEeCC
Q 002196 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 587 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
.+++..+..-.. .|.++.|+++.+.|+.++ .+..+++-.+.+......++.. ...+.|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666555444 799999999999998887 6778999999887777666543 234578999999999999999999
Q ss_pred CcEEEEEcc
Q 002196 664 NGIKILANA 672 (954)
Q Consensus 664 g~i~iwd~~ 672 (954)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.1e-24 Score=211.65 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=220.6
Q ss_pred CeEEEEeCCCCCceeEeeCCCC-ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCC
Q 002196 531 GKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (954)
Q Consensus 531 g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 609 (954)
..+.+||++++.....+..... .-.++..- .+.+++++... ...+.+|.+...........-.+ ++.+++-+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~---rp~l~vw~i~k~~~~~q~~v~Pg-~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLK---RPLLHVWEILKKDQVVQYIVLPG-PVHALASSNL 92 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeeccc---CccccccccCchhhhhhhccccc-ceeeeecCCC
Confidence 4489999999998888876522 11111111 33677777643 34699999876654443322333 7999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccce
Q 002196 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS 689 (954)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 689 (954)
|.+++.|+..|.|++|.+.+|.++..+..| -..|+|+.|+-||.+|++|+.||.|.+|.+.+- +.....+.-
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l---v~a~~~~~~--- 164 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL---VSADNDHSV--- 164 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEee---cccccCCCc---
Confidence 999999999999999999999999999766 669999999999999999999999999987532 111110000
Q ss_pred ecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEe
Q 002196 690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769 (954)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~ 769 (954)
.-++.|
T Consensus 165 -----------------------------------------------------------~p~~~f--------------- 170 (476)
T KOG0646|consen 165 -----------------------------------------------------------KPLHIF--------------- 170 (476)
T ss_pred -----------------------------------------------------------cceeee---------------
Confidence 011112
Q ss_pred cCCCCCccceEEEEEecCC--ceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCcc
Q 002196 770 LPDNLTAMRVSRLIYTNSG--LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP 847 (954)
Q Consensus 770 ~~~~~~~~~v~~~~~spdg--~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~ 847 (954)
..|.-.|+++...+.| .+|++++.|.++++||+.. |.++.... ....+.
T Consensus 171 ---~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~----fp~si~ 221 (476)
T KOG0646|consen 171 ---SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT----FPSSIK 221 (476)
T ss_pred ---ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----cCCcce
Confidence 2377888888887664 5799999999999998764 33322211 457899
Q ss_pred EEEeccCCCeEEEec-CCeEEEEEccc----------------ccEEEeeCCCCC--CeeEEEecCCCCceEEEEecCcc
Q 002196 848 CFALSKNDSYVMSAS-GGKISLFNMMT----------------FKTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSS 908 (954)
Q Consensus 848 ~~~~s~dg~~la~~s-dg~i~iwd~~~----------------~~~~~~~~~h~~--~v~~l~~sp~d~~~lasgs~dg~ 908 (954)
+++.+|-++.+.+|. +|.|.+.++.. +..+..+.||.+ .|+|++++- ||.+|++|+.||.
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGK 300 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCC
Confidence 999999999999998 99998887643 234567889998 899999999 9999999999999
Q ss_pred EEEEeccccceEEEecCCccceeEEEEec
Q 002196 909 IQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (954)
Q Consensus 909 i~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 937 (954)
|.|||+.+.++++++..-.++|+.+.+.|
T Consensus 301 VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 301 VCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999999999998886778899999855
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=206.67 Aligned_cols=225 Identities=14% Similarity=0.156 Sum_probs=191.9
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC-
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV- 495 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~- 495 (954)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 45789999999999999999999999999999999887 6789999999999999999 79999999999999763
Q ss_pred --------CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEE
Q 002196 496 --------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 496 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
+-++.+.|..|.-+|+++...+.+...+++|+|.|.++++||+..+.....+.. ...+.+++.+|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEE
Confidence 235788999999999999988776668999999999999999998766665543 55889999999999999
Q ss_pred EEEeCCCCceEEEEEeCCC----------------CeEEEEEecCCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 568 SCGTNKEGESYLVEWNESE----------------GAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
+|+.++. |.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||+|+|||+.+.
T Consensus 234 iGt~~G~----I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTEEGK----IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCCcce----EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9986543 66655432 234566677755 58999999999999999999999999999999
Q ss_pred ceeEEEecCCCCCCcceEEECCC
Q 002196 631 NLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
++++++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888643 568888888763
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.7e-21 Score=205.85 Aligned_cols=293 Identities=12% Similarity=0.146 Sum_probs=210.8
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCe
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i 601 (954)
..+++++.|+.+++||+.+.+....+..+ ..+..++|+|+++.+++++. .+..+++||..+++....+..+. .+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGP--DP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCC--Cc
Confidence 47889999999999999887766666543 34678999999998765542 14459999999998877776543 35
Q ss_pred EEEEEeCCCCEEEEE-ECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC-cEEEEEccCCCeeEE
Q 002196 602 GVVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLR 679 (954)
Q Consensus 602 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~ 679 (954)
..++|+|+++.++++ +.++.|++||+.+++.+..+... ..+.+++|+|+|.++++++.++ .+.+||..++ ....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-~~~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-EIVD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-eEEE
Confidence 678899999977665 46899999999998877777532 2467899999999999888765 4667787655 2211
Q ss_pred EeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccc
Q 002196 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (954)
Q Consensus 680 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~ 759 (954)
...
T Consensus 152 ~~~----------------------------------------------------------------------------- 154 (300)
T TIGR03866 152 NVL----------------------------------------------------------------------------- 154 (300)
T ss_pred EEE-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cCCCceeEEecCCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCC
Q 002196 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (954)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~ 838 (954)
....+..++|+|+|+.+++++ .++.+++||+.+... ++.++..... ..
T Consensus 155 ---------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-----------~~~~~~~~~~-----~~ 203 (300)
T TIGR03866 155 ---------------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-----------IKKITFEIPG-----VH 203 (300)
T ss_pred ---------------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-----------eeeeeecccc-----cc
Confidence 011234688999999886555 589999998764311 0000000000 00
Q ss_pred CCCCCCCccEEEeccCCCeEEEe--cCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEE-ecCccEEEEecc
Q 002196 839 DTNPEDAVPCFALSKNDSYVMSA--SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG-MEDSSIQIYNVR 915 (954)
Q Consensus 839 ~~~~~~~v~~~~~s~dg~~la~~--sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasg-s~dg~i~iwd~~ 915 (954)
. .......++|+||+++++++ +++.+.+||+.+++....+. +...+.+++|+| +|++|+++ ..+|.|.+||+.
T Consensus 204 ~--~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 204 P--EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred c--ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECC
Confidence 0 11234468899999986554 36789999999988876654 445789999999 88888876 468999999999
Q ss_pred ccceEEEecCCccceeEEEEec
Q 002196 916 VDEVKTKLKGHQKRITGLAFSN 937 (954)
Q Consensus 916 ~~~~~~~~~~h~~~V~~l~~s~ 937 (954)
+++++.++... ...+.++|+|
T Consensus 280 ~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 280 ALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEEcc-cccceeEeCC
Confidence 99999999865 5568898875
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=9.9e-23 Score=203.13 Aligned_cols=294 Identities=18% Similarity=0.223 Sum_probs=223.3
Q ss_pred CCCCeeEEEEcCCCC-eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCE
Q 002196 355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~-~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (954)
+.++|++++|+|... .++|+|...|+|-+||+.+.+.... ...++..|..+|.++.|+| +...
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 788999999999876 7999999999999999974433322 1123678999999999999 5678
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce-EEEeccCCCCeE
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVY 511 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~ 511 (954)
+++.+.||+|+.-|++++.. .....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999987642 22223433556788899998887 577777777999999998765 566777889999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCce----eEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC--
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-- 585 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-- 585 (954)
+++++|... .+++|++.|++.+|||++..... .....|...|.+..|||.+-.|++.+.|. .|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~----~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN----EIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC----ceEEeecccc
Confidence 999999876 79999999999999999875543 33445677999999999988888887644 59999973
Q ss_pred --CCeEEEEEecCCC--C--CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcce-EEECCCCC-EE
Q 002196 586 --EGAVKRTYHGLGK--R--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC-IRFNKEGI-LL 657 (954)
Q Consensus 586 --~~~~~~~~~~~~~--~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~s~~~~-~l 657 (954)
.-.+...+.-... . ......|.|+..++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2233333321111 1 1234579999999999998889999999998888776554322 3443 57999777 55
Q ss_pred EEEeCCCcEEEEEcc
Q 002196 658 AVSTNDNGIKILANA 672 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~ 672 (954)
+-++..|.|+||--.
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555567888888643
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.6e-23 Score=190.25 Aligned_cols=252 Identities=18% Similarity=0.247 Sum_probs=200.8
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCCE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 432 (954)
|.+-|..+...--|+ .|||++.|++|+|+.+....... ....+.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888888888888 68999999999999998765311 1112789999999999987 7999
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC---ceEEEeccCCCC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESP 509 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 509 (954)
||+++.||.|.||.-++++ ..+......|...|++++|.|.+-.+.|++++.||.|.|.+.++. ........|.-.
T Consensus 73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999998874 444456788999999999999988889999999999999987754 223456789999
Q ss_pred eEEEeeeccCC-c-----------cEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCC----CEEEEEEe
Q 002196 510 VYSICPHHKEN-I-----------QFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG----ARLFSCGT 571 (954)
Q Consensus 510 v~~~~~~~~~~-~-----------~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g----~~l~~~~~ 571 (954)
|++++|.|..- | +.|++|+.|..|++|+.++..- ...+..|...|..++|.|.- ..|++++.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988632 1 5699999999999999887532 23467788899999999964 46888887
Q ss_pred CCCCceEEEEEeCCCC--eEEEE-EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 572 NKEGESYLVEWNESEG--AVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
|+. +.||..+.. ....+ +..... .+..+.|+..|+.|+.++.|+.|.+|.-..
T Consensus 232 Dg~----viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 DGT----VIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCc----EEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 554 899976521 11122 222333 789999999999999999999999997543
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=190.18 Aligned_cols=253 Identities=13% Similarity=0.212 Sum_probs=195.9
Q ss_pred eEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 421 V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999977555 7889999999999999999 6999999999999999999999
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC----ceEEEEECCCCCEEEEEEeCCCCc
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----SSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
+.+. ..++|+.+.|+|......+++- .+..-.+-++........-..... ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9887 7889999999998775455444 333344455554322221111111 2234468999999999865 4
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-------cee--EEEecCCCCCCcce
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-------NLL--ASIDADGGLQASPC 647 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 647 (954)
+.+.++|..+.+++..++......|..+.++..|++++.-+.|+.|+.|+++.- ++. +.++.--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 569999999999998887766447889999999999999999999999997631 111 11111011223458
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEEccCCCeeEEEecccc
Q 002196 648 IRFNKEGILLAVSTN-DNGIKILANADGIRLLRTVESRT 685 (954)
Q Consensus 648 v~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~ 685 (954)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999887764 468999999999 8999998766
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=7.9e-21 Score=203.33 Aligned_cols=277 Identities=10% Similarity=0.058 Sum_probs=204.5
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE-EEEEcCCEEEEEEeeC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHG 449 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~~~dg~i~iwd~~~ 449 (954)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999998876543 2223 346789999999977 5667789999999998
Q ss_pred CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec
Q 002196 450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 529 (954)
Q Consensus 450 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 529 (954)
++... .+..+. .+..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++|++++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 87554 344333 3567899999985 345666789999999999888777763 3346778887755 68888877
Q ss_pred CC-eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC------CCCeE
Q 002196 530 DG-KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVG 602 (954)
Q Consensus 530 dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~ 602 (954)
++ .+.+||.++........ .......++|+|+|+.+++++. .++.+.+||+.+++.+..+..+. .....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765443332 2345678999999998876542 13459999999998777664321 11234
Q ss_pred EEEEeCCCCEEEEE-ECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE-eCCCcEEEEEccCCCeeEEE
Q 002196 603 VVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRT 680 (954)
Q Consensus 603 ~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 680 (954)
.++|+|++++++++ +.++.+.+||+.+++....+.. ...+.+++|+|+|++|+++ +.+|.|.+||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 67899999986554 4677899999998887766532 2368899999999999876 46899999999998 66665
Q ss_pred ecc
Q 002196 681 VES 683 (954)
Q Consensus 681 ~~~ 683 (954)
++.
T Consensus 287 ~~~ 289 (300)
T TIGR03866 287 IKV 289 (300)
T ss_pred EEc
Confidence 543
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=6.8e-22 Score=203.77 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=138.0
Q ss_pred cccccccccccccccCCCceeEEecCCCCCccceEEEEEec-CCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccc
Q 002196 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN-SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824 (954)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l 824 (954)
+..|.|-||++... +....-..+.-.....|+.+.|.| |..+|+++++||.|++|.+..+.....-.
T Consensus 600 g~gG~iai~el~~P---GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--------- 667 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEP---GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--------- 667 (1012)
T ss_pred CCCceEEEEEcCCC---CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC---------
Confidence 44589999999763 222221222333567899999999 77889999999999999987542211000
Q ss_pred cCCCCcccccccCCCCCCCCCccEEEeccC-CCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEE
Q 002196 825 WQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 902 (954)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~las 902 (954)
+ + ...+.. |...|+++.|+|- ...||+++ |-+|++||+.+++....+.+|.+.|..++||| ||+.+|+
T Consensus 668 ----t--P-e~~lt~--h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~At 737 (1012)
T KOG1445|consen 668 ----T--P-EKILTI--HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIAT 737 (1012)
T ss_pred ----C--c-ceeeec--ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceee
Confidence 0 0 011333 8999999999995 56788888 99999999999999999999999999999999 9999999
Q ss_pred EecCccEEEEeccccc-eEEEecCCc-cceeEEEEecCCCeEEEecCCcc
Q 002196 903 GMEDSSIQIYNVRVDE-VKTKLKGHQ-KRITGLAFSNTLNVLVSSGADSQ 950 (954)
Q Consensus 903 gs~dg~i~iwd~~~~~-~~~~~~~h~-~~V~~l~~s~dg~~l~s~s~Dg~ 950 (954)
.+.||+|++|+-.+++ .++.-.+.. .+-..+.|.-||++++..|.|+.
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 9999999999998874 333322211 23456889999999999998863
No 136
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.1e-21 Score=205.93 Aligned_cols=484 Identities=12% Similarity=0.139 Sum_probs=299.6
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC---CEEEEEE
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG---TLFGVAY 437 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~l~s~~ 437 (954)
...||+|++++++. .+..|.||...+|+++.. +.+|..++..+.+.|.. .++.+++
T Consensus 21 ~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC--TGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccccCCcEEEEe--eCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEEe
Confidence 45789999966543 457899999999998763 78999999999999854 4778999
Q ss_pred cCCEEEEEEeeCCcceeeeee-eeccc-------CC--------------------------------------------
Q 002196 438 SKHIVHLYTYHGGDELRNHLE-IEAHV-------GS-------------------------------------------- 465 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~-~~~h~-------~~-------------------------------------------- 465 (954)
.||.|++||...+..++.... +.-|. ..
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 999999999988765542100 00000 00
Q ss_pred ---EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE----eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeC
Q 002196 466 ---VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538 (954)
Q Consensus 466 ---v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 538 (954)
-.++.+++.|. +...-.+..+.+|+..++..... -..|...+++.+++|.+ .+++++..||.|.+|.-
T Consensus 160 ~~~~~~I~~~~~ge---~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~--~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGE---FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE--RYLAAGDSDGRILVWRD 234 (792)
T ss_pred hcCCccEEEcCCce---EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc--ceEEEeccCCcEEEEec
Confidence 11222333332 22333345666777766441110 12366668888888876 79999999999999953
Q ss_pred CC----CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEE
Q 002196 539 DN----LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 539 ~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 614 (954)
-. ......+..|...|.+++|+++|.+|++||. ++.+.+|.+.+++ ++|-..-+.+|..+.++||+...+
T Consensus 235 ~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~----E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR----EGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYS 308 (792)
T ss_pred cccccccccceEEEecccccceeEEecCCceEeeccc----ceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEE
Confidence 22 1123446667779999999999999999986 4569999999988 344333344899999999999999
Q ss_pred EEECCCeEEEEECCCCceeEEEecCC---------CCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccc
Q 002196 615 AAGDEFMIKFWDMDNVNLLASIDADG---------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT 685 (954)
Q Consensus 615 ~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 685 (954)
...+|..|.+....+.....++.+.. ...-.+.++++|.-+.++..+..|.|.+||+.+.... ..+..-.
T Consensus 309 l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~ 387 (792)
T KOG1963|consen 309 LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCD 387 (792)
T ss_pred EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEEe
Confidence 99999999999887665555554321 1233567889997778888899999999999877333 3332111
Q ss_pred ccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCC----cccccccccccccccccccccC
Q 002196 686 FDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV----KPKIADEAVEKSRIWKLTEITE 761 (954)
Q Consensus 686 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~lvs~~~d~~i~iw~~~~~~~ 761 (954)
........ ....+.. .....-.+.+++.. ...........+++|.......
T Consensus 388 ~n~~~~~~--------n~~v~it-----------------av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 388 ENYSDGDV--------NIQVGIT-----------------AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred ecccCCcc--------eeEEeee-----------------eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 10000000 0000000 00000001111110 1111222235788898876444
Q ss_pred CCceeEEecCCCCCccceEEEEEecC--CceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCC
Q 002196 762 PSQCRSLRLPDNLTAMRVSRLIYTNS--GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (954)
Q Consensus 762 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~ 839 (954)
.-...+.... .|...+...++.+. ..++++++.||.+++|.+....- ++...+.-.. ..-+
T Consensus 443 t~~L~T~I~~--PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n-------------~~k~~s~W~c--~~i~ 505 (792)
T KOG1963|consen 443 TFILNTKINN--PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN-------------IYKKSSNWTC--KAIG 505 (792)
T ss_pred eeEEEEEEec--CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc-------------cCcCccceEE--eeee
Confidence 3333322222 25555555555443 23789999999999998753211 0011111100 0111
Q ss_pred CCCCCCccEEEeccCCCeEEEecCCeEEEEEcccc-cEEEeeCCCCCCeeEEEecC---CCCceEEEEecCccEEEEecc
Q 002196 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF-KTMTTFMPPPPAATFLAFHP---QDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 840 ~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp---~d~~~lasgs~dg~i~iwd~~ 915 (954)
..|..++++++||.||..||++.+++|.+||..+. +...+......++..+.|.. .++. +.....+.+.+|++-
T Consensus 506 sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll 583 (792)
T KOG1963|consen 506 SYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLL 583 (792)
T ss_pred ccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc--eeeccCceEehHhhh
Confidence 23789999999999999999999999999999883 33333332233444444432 1222 233356788899988
Q ss_pred ccceEE
Q 002196 916 VDEVKT 921 (954)
Q Consensus 916 ~~~~~~ 921 (954)
+..+.-
T Consensus 584 ~~~l~w 589 (792)
T KOG1963|consen 584 SMSLIW 589 (792)
T ss_pred hhheec
Confidence 766544
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=2.3e-22 Score=201.95 Aligned_cols=277 Identities=9% Similarity=0.147 Sum_probs=224.9
Q ss_pred CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC---eEEEEEecC-CCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 002196 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i 624 (954)
.|+.-|..+++|...+++++|+ .+.|++||+... .++..+... .+..|+++.+.|||+.|++|++-.++.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 4566778889999999999987 456999998753 345555443 3447899999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCcccc
Q 002196 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (954)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 704 (954)
||+....+....+.......+..++.+||.++.+++..||.|.|||+.+. .+++.+++
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqG--------------------- 549 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQG--------------------- 549 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccC---------------------
Confidence 99987665444444333456788999999999999999999999999877 66666655
Q ss_pred ccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEE
Q 002196 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (954)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 784 (954)
|...+.|+.+
T Consensus 550 ----------------------------------------------------------------------htDGascIdi 559 (705)
T KOG0639|consen 550 ----------------------------------------------------------------------HTDGASCIDI 559 (705)
T ss_pred ----------------------------------------------------------------------CCCCceeEEe
Confidence 4556778999
Q ss_pred ecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-C
Q 002196 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 863 (954)
Q Consensus 785 spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d 863 (954)
++||..|-+|+-|.+||-||+.. ++.+.. ......|.++.++|.+.+||+|- +
T Consensus 560 s~dGtklWTGGlDntvRcWDlre----------------------grqlqq----hdF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLRE----------------------GRQLQQ----HDFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred cCCCceeecCCCccceeehhhhh----------------------hhhhhh----hhhhhhheecccCCCccceeeeccc
Confidence 99999999999999999997653 222111 11457889999999999999998 8
Q ss_pred CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEE
Q 002196 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV 943 (954)
Q Consensus 864 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 943 (954)
+.+.|.... +.....+.-|..-|.++.|++ -|+++++.+.|..+..|...-|..+...+ .++.|.++..|-|++++|
T Consensus 614 s~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 614 SNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIV 690 (705)
T ss_pred CcEEEEecC-CccceeecccccEEEEEEecc-cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEE
Confidence 889988874 555566777999999999999 99999999999999999999887776666 457899999999999999
Q ss_pred EecCCcce
Q 002196 944 SSGADSQV 951 (954)
Q Consensus 944 s~s~Dg~I 951 (954)
|||.|+.-
T Consensus 691 TGSGdkkA 698 (705)
T KOG0639|consen 691 TGSGDKKA 698 (705)
T ss_pred ecCCCcce
Confidence 99999753
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.1e-24 Score=222.99 Aligned_cols=236 Identities=17% Similarity=0.314 Sum_probs=212.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 35688999999987788999999999999999987654444 6899999999999999887 799999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+..++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||++..++...+..|...+.++.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999999877 78999999999999999999999999998889999999999999999875
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
+..+++||...|+....|..|.. .+..+.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 44699999999999999999887 8999999999989999999999999999988877776654 568999999999
Q ss_pred CCEEEEEeCC
Q 002196 654 GILLAVSTND 663 (954)
Q Consensus 654 ~~~l~s~~~d 663 (954)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999887654
No 139
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-20 Score=204.23 Aligned_cols=462 Identities=12% Similarity=0.112 Sum_probs=293.3
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCc-eEEEEEcCCCeEEEEECCCCceEE
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ-LSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
.-.||+|+++++.. .+..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+.
T Consensus 21 ~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-TGNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEe-eCCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 34689999998876 45679999999999887 78999999999999988764 468899999999999999999998
Q ss_pred EeccCCCCeEEEeeeccC--CccEEEEEecCCe------------EEEEeCCCCCce-eEeeCCCCceEEEEECCCCCEE
Q 002196 502 IFEGHESPVYSICPHHKE--NIQFIFSTATDGK------------IKAWLYDNLGSR-VDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 502 ~~~~~~~~v~~~~~~~~~--~~~~l~s~s~dg~------------i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l 566 (954)
++..+. ++..+.+.+.. ....+..+..|.. ++-+.+.+.... ..+......-.++.+++.|.+.
T Consensus 97 t~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 887433 23333221110 0011111222211 111111111100 0010111124678888888877
Q ss_pred EEEEeCCCCceEEEEEeCCCCeE---EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--CceeEEEecCCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLLASIDADGG 641 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~ 641 (954)
..+... .+.+|+..++.. .+....++...+.+.+++|.+++++++..||.|.+|.--. +.....-..|.|
T Consensus 176 ~i~~~~-----~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 176 GIVHMC-----KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEEee-----eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 776532 378888776541 1112223333578899999999999999999999997433 222222223445
Q ss_pred CCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccc
Q 002196 642 LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA 721 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (954)
...|.+++|+++|.+|.+|+..|.+.+|.+.++. .+-++.-...+..+
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i------------------------------ 298 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHI------------------------------ 298 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEE------------------------------
Confidence 7799999999999999999999999999999883 22233222222222
Q ss_pred ccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecC----CCCCccceEEEEEecCCceEEEeecC
Q 002196 722 PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP----DNLTAMRVSRLIYTNSGLAILALASN 797 (954)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~spdg~~l~~~~~d 797 (954)
..++|+........|+.|.+-...+.........+..+ .....+-.+.++++|.-+.++-.+..
T Consensus 299 ------------~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~ 366 (792)
T KOG1963|consen 299 ------------VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP 366 (792)
T ss_pred ------------EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence 22345666666666777777766543322222222211 12245667888999977778888899
Q ss_pred CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec---------CC--eE
Q 002196 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS---------GG--KI 866 (954)
Q Consensus 798 g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s---------dg--~i 866 (954)
|.|++||+.+...- ....+...+...+.. .+...+++++.+..|.++++.. || .+
T Consensus 367 g~vQ~ydl~td~~i------~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 367 GHVQFYDLYTDSTI------YKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred ceEEEEecccccee------eeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 99999997653211 000011111111111 1455688889999999999873 33 38
Q ss_pred EEEEccc----ccEEEee-CCCCCCeeEEEecCCCCc-eEEEEecCccEEEEeccc----------cceEEEecCCccce
Q 002196 867 SLFNMMT----FKTMTTF-MPPPPAATFLAFHPQDNN-IIAIGMEDSSIQIYNVRV----------DEVKTKLKGHQKRI 930 (954)
Q Consensus 867 ~iwd~~~----~~~~~~~-~~h~~~v~~l~~sp~d~~-~lasgs~dg~i~iwd~~~----------~~~~~~~~~h~~~V 930 (954)
++|-... ..+...+ ..|...+...+|.+.-.. ..++++.||.++||-+.. ..|...-..|..++
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i 512 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI 512 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence 8997543 3333333 357766555555442333 899999999999999842 23444434588999
Q ss_pred eEEEEecCCCeEEEecCCcceec
Q 002196 931 TGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 931 ~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
++++||.||. ++++|.|++|-|
T Consensus 513 ~a~~fs~dGs-lla~s~~~~Iti 534 (792)
T KOG1963|consen 513 TALCFSQDGS-LLAVSFDDTITI 534 (792)
T ss_pred cchhhcCCCc-EEEEecCCEEEE
Confidence 9999999995 555666666643
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-21 Score=209.48 Aligned_cols=279 Identities=15% Similarity=0.216 Sum_probs=222.5
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
..|...-+.++|.|+|. +|++++.||.|++|+....... +....-+...|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~------------------P~ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEE------------------PETIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccC------------------CchhhccCceeEEEeec--ccc
Confidence 35888899999999999 7889999999999997765211 00122266777777754 559
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
|++|+.+++|.+|.+.+++.-. .+...+-++.+++|+.+|+ +++.||.|-.|++-+..+......+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999876543 3445667899999999999 7999999999999999999999999999999999
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--------CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
+.++|.+ .+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..+++.+.++ .|.+|+.
T Consensus 144 l~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN----TVKVYSR 217 (933)
T ss_pred eeEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----eEEEEcc
Confidence 9998776 79999999999999999987665543321 23567899999977777766544 4999999
Q ss_pred CCCeEEEEEecCCCC-CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 585 SEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 585 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
.++.....+...... .+..+.|+|.|.||++++.||.|.|||..+.+. |.....|.+++|.|+..-+-.-...
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeec
Confidence 999888887664332 488899999999999999999999999988222 3335679999999988766555555
Q ss_pred CcEEEE
Q 002196 664 NGIKIL 669 (954)
Q Consensus 664 g~i~iw 669 (954)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 555544
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=7.8e-21 Score=197.12 Aligned_cols=273 Identities=13% Similarity=0.172 Sum_probs=200.6
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
.|..++|-|||..+++.+ +..+.+||...|..+.+ +++|...|+|++|+.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 799999999999776654 45799999999998875 899999999999999999999999
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 517 (954)
.|..|.+|.-.-...++ -.|.+.|.||.|+|-.. .+++++- ...-+|....... ..|...+.+++.++
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V----~K~kss~R~~~CsW 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSV----SKHKSSSRIICCSW 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhH----HhhhhheeEEEeee
Confidence 99999999876433332 35999999999999988 5788776 3667887654332 22333344444444
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCCceeEeeC---CCCceEEEEECCCCC-----EEEEEEeCCCCceEEEEEeCCCCeE
Q 002196 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGHSSTMMAYSADGA-----RLFSCGTNKEGESYLVEWNESEGAV 589 (954)
Q Consensus 518 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~-----~l~~~~~~~~~~~~i~iwd~~~~~~ 589 (954)
..+|++++.|-.+|+|.+-+-. ++....+.. ...+|.+++|+|... .+++...+ .++.++.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~----qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG----QTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc----ceeEEEEec-cee
Confidence 5666999999999999988643 344444443 345899999999643 23333221 124444432 443
Q ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 590 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
+.+-..-.- ...++.+.++|.+++.||.|+.+.+|.. .|-.+.++... ...|..++..|+++.++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehh
Confidence 332222222 4567888999999999999999999974 45566665433 4589999999999999999999999999
Q ss_pred EccC
Q 002196 670 ANAD 673 (954)
Q Consensus 670 d~~~ 673 (954)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8753
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.3e-21 Score=181.86 Aligned_cols=258 Identities=17% Similarity=0.292 Sum_probs=188.9
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC----ceeEEEecCCCCCCcceEEECC--CCCEEEEEeCCCcEEEEEc
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNK--EGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~--~~~~l~s~~~dg~i~iwd~ 671 (954)
..-|.++.|.+.|+.+++|+.|++|+|||.++. .+......| .+.|..+.|.+ -|+.+|+++.|+++.||+-
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah--~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH--DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec--CCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 347999999999999999999999999997543 234444544 66899999976 6899999999999999974
Q ss_pred cCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccc
Q 002196 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (954)
Q Consensus 672 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i 751 (954)
. ...+..+.
T Consensus 91 ~-----~~~~~~~~------------------------------------------------------------------ 99 (361)
T KOG2445|consen 91 Q-----EKSEEAHG------------------------------------------------------------------ 99 (361)
T ss_pred c-----cccccccc------------------------------------------------------------------
Confidence 2 11122111
Q ss_pred cccccccccCCCceeEEecCCCCCccceEEEEEecC--CceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCC
Q 002196 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS--GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (954)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~ 829 (954)
+-|... .. + ....+.|+.+.|.|. |-.+++++.||.+|||+.... ..++-|.+..
T Consensus 100 ~~Wv~~--------tt--l--~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp-----------~nLs~W~Lq~ 156 (361)
T KOG2445|consen 100 RRWVRR--------TT--L--VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP-----------MNLSQWTLQH 156 (361)
T ss_pred ceeEEE--------EE--e--ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc-----------cccccchhhh
Confidence 011110 00 1 114678999999986 667899999999999986532 1233343332
Q ss_pred cccccccCCCCCCCCCccEEEeccC---CCeEEEecCC------eEEEEEcccc----cEEEeeCCCCCCeeEEEecCCC
Q 002196 830 GILMTNDISDTNPEDAVPCFALSKN---DSYVMSASGG------KISLFNMMTF----KTMTTFMPPPPAATFLAFHPQD 896 (954)
Q Consensus 830 ~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~sdg------~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~d 896 (954)
........+ ..+.....|+.|+|. ..+||.|+|. .++||..... ..+.++.+|..+|+.++|.|.-
T Consensus 157 Ei~~~~~pp-~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 157 EIQNVIDPP-GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhccCCc-ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 221111111 136677889999874 5689999865 7999986543 3456788999999999999954
Q ss_pred C---ceEEEEecCccEEEEecccc--------------------ceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 897 N---NIIAIGMEDSSIQIYNVRVD--------------------EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 897 ~---~~lasgs~dg~i~iwd~~~~--------------------~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
| .+||+++.|| |+||.+... +.+..+.+|.+.|+.+.|.-.|..|+|+|.||+||+
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 4 4899999999 999998731 345667899999999999999999999999999986
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.6e-21 Score=200.42 Aligned_cols=246 Identities=11% Similarity=0.165 Sum_probs=195.4
Q ss_pred cccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 410 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
..-++.+|++.|.||...|.|.+||+|+.||+|+||.+.+|.+++... ..+.|.|++|+|.+...+|+++- +..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~-~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAV-GECV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEe-cCce
Confidence 334678999999999999999999999999999999999999987432 34579999999998864444433 3335
Q ss_pred EEEECCCCc-------------------------------------eEEEeccCCCCeEEEeeeccCCccEEEEEecC--
Q 002196 490 KVWDAVTGT-------------------------------------KQYIFEGHESPVYSICPHHKENIQFIFSTATD-- 530 (954)
Q Consensus 490 ~iwd~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-- 530 (954)
.|-+..-|. -++..-.|...|..+.|+..+ .||++...+
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG--DYlatV~~~~~ 544 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG--DYLATVMPDSG 544 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC--ceEEEeccCCC
Confidence 444432220 012223477889999998666 689887654
Q ss_pred -CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCC
Q 002196 531 -GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (954)
Q Consensus 531 -g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 609 (954)
..|.|+++.......-+....+.+.++.|+|...+|++++. ..|++||+...+.+.++..... .|.+++++|.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-----~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~ 618 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-----RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPN 618 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-----cceEEEehhHHHHHHHHhcCCe-eeeeeeecCC
Confidence 46889998876666666667778999999999999999873 3599999998887777766555 8899999999
Q ss_pred CCEEEEEECCCeEEEEECCCC-ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 610 KNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 610 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
|..|+.|+.|+.+..+|+.-. ++.+++..| ...+++|+|++.-.++++|++||.+.|+-
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999999999999999754 566677766 56899999999999999999999999885
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.3e-21 Score=205.87 Aligned_cols=246 Identities=14% Similarity=0.204 Sum_probs=211.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC-cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
..|+..-+.++|.|+|++|++++.||.|++|+.... +... .+..+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 469999999999999999999999999999987665 3222 333377778887765 44 499999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.++..-..+....-++.+++++.++ .+++.||.|-.|++-++.+......+..|..+|.++.|+|++.+|++.+.+|
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 99988777777778889999987544 8999999999999999999999999999999999999999999999988655
Q ss_pred CCceEEEEEeCCCCeEEEEEecCC-------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcc
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLG-------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (954)
.+++||+.++.+..++.+-. ...+..++|+|++..++..+.|+.|++|+..+.+....+....+...+.
T Consensus 161 ----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 161 ----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred ----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 49999999988776664421 2256678999999999999999999999999999999998766666699
Q ss_pred eEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 647 CIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 647 ~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
+++|+|+|++||+++.||.|.|||+.+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999999986
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.5e-21 Score=191.67 Aligned_cols=243 Identities=12% Similarity=0.168 Sum_probs=190.5
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeee------------------eecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLE------------------IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
-|+++|.|+.|..|.|||+.-...+.+... -.+|+..|.+++|+..-+. +|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 378999999999999999853222221111 2369999999999988777 799999999999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
+||+.+|++..++..|...|.++.|++... .+|++|+.|++|.+.|.+..........-.+.|-.++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999998765 8999999999999999995443333233355899999999887766665
Q ss_pred eCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceE
Q 002196 571 TNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (954)
.+ +++++-+|++.. +++.++..|.+ .|.++++++.- .++++++.|+.|++|++.....-.........+...|.
T Consensus 349 td---dG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 TD---DGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred cC---CceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 33 556999999975 89999999988 99999998754 57888899999999998764443222211113346677
Q ss_pred EECCCC-CEEEEEeCCCcEEEEEccCCCee
Q 002196 649 RFNKEG-ILLAVSTNDNGIKILANADGIRL 677 (954)
Q Consensus 649 ~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~ 677 (954)
++.|+- -+++.|+..+.++|||+.+....
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 888854 46788888889999999887433
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2e-21 Score=201.46 Aligned_cols=290 Identities=17% Similarity=0.241 Sum_probs=210.1
Q ss_pred EEEc--CCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC
Q 002196 362 MDFH--PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 439 (954)
Q Consensus 362 ~~~s--p~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d 439 (954)
+.|+ |..+.+|+.+..||.|.++|.....-..+ ++ +......|.+.|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e---------e~----~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE---------ER----QLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh---------hh----hhcccccccceeEeeccCCCceeEEEccCC
Confidence 4444 34566999999999999999876543211 00 112245799999999999977789999999
Q ss_pred CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc---------------------
Q 002196 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--------------------- 498 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------- 498 (954)
.++++||+++++..... .+.+|.+.|.+++|.|++.. +|++|+.||.|.|||++-..
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998876533 47899999999999999887 69999999999999986322
Q ss_pred ------eEEEeccCCCCeEE---EeeeccCCccEEEEEec-CCeEEEEeCCCCCceeE--------eeCC---CCceEEE
Q 002196 499 ------KQYIFEGHESPVYS---ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVD--------YDAP---GHSSTMM 557 (954)
Q Consensus 499 ------~~~~~~~~~~~v~~---~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~v~~~ 557 (954)
.+.....+...|.+ +.+..+. ..|++++. |+.|++||++....... +..+ ...+.++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEecc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 01112234444444 3333333 68898888 99999999987654332 1112 2367788
Q ss_pred EECCCCCEEEEEEeCCCCceEEEEEeCCCC--eEEEEEecCCCCCeE-EEEEeCCCCEEEEEECCCeEEEEECCCCcee-
Q 002196 558 AYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVG-VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL- 633 (954)
Q Consensus 558 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~- 633 (954)
.....|.+|++.+.|+. |++|++.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 278 ~lDssGt~L~AsCtD~s----Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNS----IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EecCCCCeEEEEecCCc----EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 88888899888776554 999999764 344445544332222 1257899999999999999999999875443
Q ss_pred EEEecCCCCCCcceEEECCC-CCEEEEEeCCCcEEEEEccCC
Q 002196 634 ASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iwd~~~~ 674 (954)
..+. +|...|++++|.|. -.-++++++|-.+++|++..+
T Consensus 354 ~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 ALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3333 34668999999883 234666799999999999765
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.5e-22 Score=208.79 Aligned_cols=298 Identities=12% Similarity=0.191 Sum_probs=226.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 433 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 433 (954)
-.....+++..++-..+++.|- ..+.||.+..........++ + .. -..-...+..+.|+. +.++|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~--~--------k~--kqn~~~S~~DVkW~~~~~NlI 103 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHR--F--------KT--KQNKFYSAADVKWGQLYSNLI 103 (839)
T ss_pred cccccceEeecCCcceeEEecc--cceeeEeeCcccCCcceeee--c--------cc--ccceeeehhhcccccchhhhh
Confidence 3456778888888776655553 35677766544322111110 0 00 001123455678876 68899
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
|+++..|.|.+||+.....-+....+..|...++++.|++.... +|++||.||+|++||++..+-..++.+....|.++
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999999999999863222223368899999999999998887 79999999999999999999999999999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
.|+|... ..++++...|.+++||++.... ...+..|.++|.++.|+|++.+|++||.|+ .|++||+.+++.-..
T Consensus 183 ~fsp~~~-~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK----~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 183 KFSPGYG-NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK----MVKIWDMTDSRAKPK 257 (839)
T ss_pred eeccCCC-ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc----cEEEEeccCCCccce
Confidence 9999764 8999999999999999997653 556888999999999999999999998654 499999987765555
Q ss_pred EecCCCCCeEEEEEeCCCCE-EEEEE--CCCeEEEEECCCC-ceeEEEecCCCCCCcceEEECC-CCCEEEEEeCCCcEE
Q 002196 593 YHGLGKRSVGVVQFDTTKNR-FLAAG--DEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIK 667 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~ 667 (954)
..-+...++..+.|-|...+ |++++ .|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||+|.
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHH
Confidence 55555568999999998755 55554 6889999999764 445566655 66889999976 566889999999887
Q ss_pred EEEccCC
Q 002196 668 ILANADG 674 (954)
Q Consensus 668 iwd~~~~ 674 (954)
.-.+.+.
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 6655544
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=201.88 Aligned_cols=289 Identities=17% Similarity=0.180 Sum_probs=211.9
Q ss_pred EEEEcc---CCCEEEEEEcCCEEEEEEeeCCcce---eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 423 RVMWSP---DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 423 ~l~~sp---dg~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
+..|++ ....|+.+..||.|.++|.....-. +.+.....|...|..+.|.| |+. .|++++.|.++++||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 366766 3457889999999999998753211 11235668999999999999 555 699999999999999999
Q ss_pred CceEEE--eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee---------------------------Ee
Q 002196 497 GTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---------------------------DY 547 (954)
Q Consensus 497 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---------------------------~~ 547 (954)
++++.. +.+|...|.++||.+... ..|++|+.||.|.+||++...... ..
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 998877 899999999999998765 789999999999999986433100 01
Q ss_pred eCCCCceEE---EEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE--------EEecCC--CCCeEEEEEeCCCCEEE
Q 002196 548 DAPGHSSTM---MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR--------TYHGLG--KRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 548 ~~~~~~v~~---~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~--------~~~~~~--~~~i~~~~~~~~~~~l~ 614 (954)
..+...+.+ +.+..|...|++++. .|+.|++||++...... .+..+. ...+.++.....|.+++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 112234444 566678889999875 35669999998754322 222221 12455666777789999
Q ss_pred EEECCCeEEEEECCCCc--eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecc
Q 002196 615 AAGDEFMIKFWDMDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692 (954)
Q Consensus 615 ~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 692 (954)
+.+.|+.|++|++.+.. ++..+.++.....-..-..+||+.++++|+.|...++|.+.+.......+.+|...|+.+.
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 99999999999997643 3333333221111223456899999999999999999999998888888999998888764
Q ss_pred hhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
..+. ....+++++.|.++++|++..
T Consensus 368 w~pS-----------------------------------------~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 368 WLPS-----------------------------------------ATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eccc-----------------------------------------cCCCceeeccCcceEEEeccC
Confidence 4321 123456779999999999853
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2e-20 Score=175.85 Aligned_cols=215 Identities=13% Similarity=0.169 Sum_probs=171.9
Q ss_pred cCCCCCCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeCCccee------e------eeeeecccCCEEEEEEecCCCceEE
Q 002196 414 SSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELR------N------HLEIEAHVGSVNDLAFSYPNKQLSV 480 (954)
Q Consensus 414 ~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~------~------~~~~~~h~~~v~~~~~s~~~~~~~l 480 (954)
...|.+.|+++...+ .|+++++|+.||.|.+||++.....+ + ...-.+|...|.++.|-|-+.. ++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 456999999999999 79999999999999999997643111 0 1113468889999999997666 79
Q ss_pred EEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCc-cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEE
Q 002196 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI-QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559 (954)
Q Consensus 481 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 559 (954)
.+++.|.++++||..+.+....|+ ..+.|++-+++|-... .++++|..|-.|++.|+..+.....+.+|...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999999988887776 5667777777765432 46777888889999999999999999999999999999
Q ss_pred CCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCC-------------CCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 560 SADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLG-------------KRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 560 s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
+|...+++..+ ..++.+++||++.. .+...+..|. ...+..++|+.++.++++++.|..+++|
T Consensus 197 sp~~e~vLatg---saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 197 SPSSEWVLATG---SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred ccCceeEEEec---CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 99998866543 23556999999864 3333333322 2368899999999999999999999999
Q ss_pred ECCCCcee
Q 002196 626 DMDNVNLL 633 (954)
Q Consensus 626 d~~~~~~~ 633 (954)
+..+|+-.
T Consensus 274 n~~~G~nt 281 (397)
T KOG4283|consen 274 NMESGRNT 281 (397)
T ss_pred ecccCccc
Confidence 99887643
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.8e-22 Score=211.44 Aligned_cols=249 Identities=11% Similarity=0.203 Sum_probs=198.0
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA 436 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~ 436 (954)
.+..|.|+.-...+|||++..|.|.+||+...... ....++..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----------------k~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN----------------KLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccc----------------hhhhHhhhhccceeeeeeccCCccEEEec
Confidence 46678888767779999999999999999762110 12224788999999999999 56788999
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeEEEee
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICP 515 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~ 515 (954)
+.||+|++||++..+... ++.+....|..++|+|.... .|+++...|.+.+||++.. ++...+.+|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999877655 67778889999999997665 7999999999999999864 567788999999999999
Q ss_pred eccCCccEEEEEecCCeEEEEeCCCCCceeEeeC-CCCceEEEEECCCCCE-EEEEEeCCCCceEEEEEeCCCCe-EEEE
Q 002196 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGA-VKRT 592 (954)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~-~~~~ 592 (954)
+|+. .+|+||+.|++|+|||+.+......... ...++.++.|-|...+ |++++.-. +..|++||++..- +..+
T Consensus 229 hPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~--dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV--DTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccc--cceEEEEeecccccccee
Confidence 9844 8999999999999999987665444333 3458999999998765 55555432 5569999998764 4566
Q ss_pred EecCCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCc
Q 002196 593 YHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
+..|.. .++.++|.. |...+.+++.||.|..-.++++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 777776 888899865 34677888888888766655543
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-20 Score=192.48 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=218.8
Q ss_pred CcceEEEe-cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 346 PKTVVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 346 ~~~~~~~~-~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
|..+-..+ +|.+.|.|+...|.|. .|++|+.||+|+||.+.+|.++.+.. ..+.|.|+
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~~v 447 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIRSV 447 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeEEE
Confidence 33444444 4999999999999998 88999999999999999999987532 33689999
Q ss_pred EEccCCC--EEEEEEcCCEEEEEEeeCCc---------------------------------cee-eeeeeecccCCEEE
Q 002196 425 MWSPDGT--LFGVAYSKHIVHLYTYHGGD---------------------------------ELR-NHLEIEAHVGSVND 468 (954)
Q Consensus 425 ~~spdg~--~l~s~~~dg~i~iwd~~~~~---------------------------------~~~-~~~~~~~h~~~v~~ 468 (954)
+|+|.++ .||++-... +.|-+..-|. ... .......|...|..
T Consensus 448 aw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred EecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 9999765 444443332 4443322110 000 01123357889999
Q ss_pred EEEecCCCceEEEEEcCC---CeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee
Q 002196 469 LAFSYPNKQLSVVTCGED---RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV 545 (954)
Q Consensus 469 ~~~s~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 545 (954)
+.|+..|. ||++...+ ..|.|+++...+...-|+...+.|.++.|+|.. .+++.++. ..|++||+.......
T Consensus 527 vtWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 527 VTWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVK 601 (733)
T ss_pred eeeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHH
Confidence 99999999 67766553 589999998887777777778889999999987 46666654 789999998755555
Q ss_pred EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 002196 546 DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (954)
Q Consensus 546 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 624 (954)
.+......+..++.+|.|..|+.++.++. +..+|+.-. ++.+++..|.. .+++++|++.-.++++|+.||++.|
T Consensus 602 kL~tg~kwiS~msihp~GDnli~gs~d~k----~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 602 KLLTGSKWISSMSIHPNGDNLILGSYDKK----MCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred HHhcCCeeeeeeeecCCCCeEEEecCCCe----eEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEE
Confidence 55555568999999999999999987554 888898765 45566666665 8999999999999999999999999
Q ss_pred EECCC------C---ceeEEEecCCCC--CCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 625 WDMDN------V---NLLASIDADGGL--QASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 625 wd~~~------~---~~~~~~~~~~~~--~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
+.-.- . -++..+.+|... ..|..+.|+|...+|++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 86321 1 234555555322 347788899999999999999999998
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=6.1e-20 Score=180.84 Aligned_cols=302 Identities=19% Similarity=0.197 Sum_probs=217.6
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeee-eeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV-KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
...+|..+.|.++....++||+.|..|+||.+..+..-.. ..+ .-...+..|..+|+++.|+|+|..|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V-----------~y~s~Ls~H~~aVN~vRf~p~gelL 80 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV-----------EYLSSLSRHTRAVNVVRFSPDGELL 80 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE-----------EEeecccCCcceeEEEEEcCCcCee
Confidence 4568999999999887899999999999999876543220 001 1223478899999999999999999
Q ss_pred EEEEcCCEEEEEEee--------C-----CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 434 GVAYSKHIVHLYTYH--------G-----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
|+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++.|.++++||+..|+..
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeE
Confidence 999999999999876 2 111223346788999999999999999 7999999999999999999999
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-------------------CCCC----ceEEE
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------------APGH----SSTMM 557 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~v~~~ 557 (954)
..+..|...|..++|.|-. +++++-+.|...+.+.+.......... .|.. -...+
T Consensus 159 ~~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eeccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 9999999999999998876 899999998876666654332211110 0111 24568
Q ss_pred EECCCCCEEEEEEeC----CCC-ceEEEEEeCCC-CeEEEEEecCCCCCeEEEEEeC------------------CCCEE
Q 002196 558 AYSADGARLFSCGTN----KEG-ESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDT------------------TKNRF 613 (954)
Q Consensus 558 ~~s~~g~~l~~~~~~----~~~-~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l 613 (954)
+|+|+|.++++...- +.- ....++|+-.. .++...+.+... ....+.|+| -+-.+
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEE
Confidence 899999998875320 110 12334454322 123333333322 333333332 22334
Q ss_pred EEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 614 LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.++ ...|++||..+-.++..... -|-..++.++|++||..|+..+.||...+..++..
T Consensus 316 aiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 316 AIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 4454 45899999998888877643 23568999999999999999999998888777654
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-21 Score=215.72 Aligned_cols=253 Identities=13% Similarity=0.218 Sum_probs=206.5
Q ss_pred CCCCeEEEEEccCCCE----EEEEEcCCEEEEEEeeC---CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 417 YTASVNRVMWSPDGTL----FGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 417 h~~~V~~l~~spdg~~----l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
-....+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++.... ++++|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3467889999998776 88899999999999865 3334444467889999999999999887 69999999999
Q ss_pred EEEECCCCceEEEec--cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCE
Q 002196 490 KVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR 565 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~ 565 (954)
.|||+..-+.-..+. ...+.|.+++|+..-. +.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhh-HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998755444442 2467799999986543 7899999999999999999877777665544 5789999999764
Q ss_pred EEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCC
Q 002196 566 LFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
-+....+.+....|.+||++.. ..++.+.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ..
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n 297 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN 297 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence 4433344456788999999865 56677778877 89999999877 88899999999999999999999999864 45
Q ss_pred CcceEEECCCCC-EEEEEeCCCcEEEEEccCC
Q 002196 644 ASPCIRFNKEGI-LLAVSTNDNGIKILANADG 674 (954)
Q Consensus 644 ~v~~v~~s~~~~-~l~s~~~dg~i~iwd~~~~ 674 (954)
.+..+.|+|... .+++++-||.|.|+.+...
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 889999999554 8899999999999998765
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.8e-19 Score=170.99 Aligned_cols=255 Identities=11% Similarity=0.164 Sum_probs=190.9
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC-cceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~ 490 (954)
-.+|..-|.|+.|.+-|+.+|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ ++++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4679999999999999999999999999999996443 234444567889999999999765 55 899999999999
Q ss_pred EEECC---------CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE------ee-------
Q 002196 491 VWDAV---------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD------YD------- 548 (954)
Q Consensus 491 iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------~~------- 548 (954)
||.=. ......++......|++++|.|..-|-.+++++.||.+|||+.-....... +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99641 112345667778899999999998889999999999999998654332221 11
Q ss_pred CCCCceEEEEECCC---CCEEEEEEeCC-CCceEEEEEeCCCC----eEEEEEecCCCCCeEEEEEeCCC----CEEEEE
Q 002196 549 APGHSSTMMAYSAD---GARLFSCGTNK-EGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTK----NRFLAA 616 (954)
Q Consensus 549 ~~~~~v~~~~~s~~---g~~l~~~~~~~-~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~ 616 (954)
.+.....|+.|+|. ..+|++++.+. .....++||....+ ..+.++.++.. +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 12336788999874 34677766431 11123666654332 34556777776 99999999963 578899
Q ss_pred ECCCeEEEEECCCCc-----------------eeEEEe-cCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 617 GDEFMIKFWDMDNVN-----------------LLASID-ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 617 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
+.|| |+||++.... .+..+. ...|...|..+.|+-.|.+|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 33557789999999999999999999999999753
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.9e-22 Score=207.27 Aligned_cols=233 Identities=13% Similarity=0.227 Sum_probs=208.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
|...|.|+..-..++ .+++|+.|..+-+|.+.....+.. +.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 777888888866666 889999999999999876544332 689999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 514 (954)
+|+.+|+|++||++.++.++ ++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988887 8999999999999999999 689999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 594 (954)
|.|++ .+++.+++|.++++||+..++....|..|...+..+.|+|..-.++.|+.++ ++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~----tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR----TVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc----eeeeeccceeEEeeccC
Confidence 98876 8999999999999999998888888998999999999999998888887754 59999999998888877
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECC
Q 002196 595 GLGKRSVGVVQFDTTKNRFLAAGDE 619 (954)
Q Consensus 595 ~~~~~~i~~~~~~~~~~~l~~~~~d 619 (954)
.... .|.+..|.|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 89999999999988888654
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=9.9e-20 Score=174.24 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=211.2
Q ss_pred CCCCeeEEEEcC----CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-
Q 002196 355 QGSAVKSMDFHP----VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD- 429 (954)
Q Consensus 355 h~~~V~~~~~sp----~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 429 (954)
|+.+|..++|++ +...++|+.+ ...+.+|.......+.. ++...-.+|......++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceee--------------eeeccCCCCCcceEEEEEEecC
Confidence 888999999985 3333555554 35788888765432211 111112358888899999875
Q ss_pred ---CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe---
Q 002196 430 ---GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--- 503 (954)
Q Consensus 430 ---g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--- 503 (954)
.-++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++||+++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3478999999999999999988776 78999999999999999988 6999999999999999999999887
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee----------------------------EeeCCCCceE
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----------------------------DYDAPGHSST 555 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----------------------------~~~~~~~~v~ 555 (954)
.+|.+.|.++.|+.++ .++++++.|.++++|++...+... ....|...|.
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 5699999999998776 699999999999999987322110 0111222344
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCC-CCe-------------EEEEEecCCCCCeEEE--EEeCCCCEEEEEECC
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNES-EGA-------------VKRTYHGLGKRSVGVV--QFDTTKNRFLAAGDE 619 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~-------------~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~d 619 (954)
|+.|- |.++++-+- ++.|..|... -++ .+..+.-... .+.-+ +|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 44442 456666443 3459999872 111 1222322222 34433 566778899999999
Q ss_pred CeEEEEECCCCcee--EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 620 FMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 620 g~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
|.|++||++..++. .++..+.....|...+|+.||.+|+...+|+.|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999987653 333334445679999999999999999999999999853
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=5.2e-17 Score=184.17 Aligned_cols=391 Identities=23% Similarity=0.394 Sum_probs=289.2
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc-ceeeeeeeeccc-CCEEEEEE-ecCCCceEEEE-EcCCCeE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHV-GSVNDLAF-SYPNKQLSVVT-CGEDRVI 489 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h~-~~v~~~~~-s~~~~~~~l~s-~~~dg~i 489 (954)
...|...+.++.|.+.+..++.++.|+.+.+|+...+. ... .+..+. ..+..+.+ ++++.. +++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999998875 333 445533 36777777 777773 2444 4559999
Q ss_pred EEEECCC-CceEEEeccCCCCeEEEeeeccCCccEEEEEec-CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEE
Q 002196 490 KVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 490 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
.+||... ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..+...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888999999999999998876 57888875 99999999998777777777888999999999998444
Q ss_pred EE-EeCCCCceEEEEEeCCCCeEEE-EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce-eEEEecCCCCCC
Q 002196 568 SC-GTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQA 644 (954)
Q Consensus 568 ~~-~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 644 (954)
.+ +. ++.+.+||...+.... .+.+|.. .. ...|+|++.++++++.|+.+++|+...... +..+. .+...
T Consensus 215 ~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 215 ASGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred EEecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCcc
Confidence 43 43 3348899998888877 6777765 33 337999998999999999999999987665 44443 33668
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccc
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (954)
+.++.|+|++..+++++.|+.+.+|+..+.. ......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee------------------------------------------
Confidence 9999999988888889999999999876652 111111
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEe-ecCCeEEEe
Q 002196 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLW 803 (954)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~dg~v~lw 803 (954)
...|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus 324 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 356 (466)
T COG2319 324 -----------------------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356 (466)
T ss_pred -----------------------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence 00133456667773333455555 567888888
Q ss_pred eccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEE-ec-CCeEEEEEcccccEEEeeC
Q 002196 804 KWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS-AS-GGKISLFNMMTFKTMTTFM 881 (954)
Q Consensus 804 ~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~s-dg~i~iwd~~~~~~~~~~~ 881 (954)
++... ..... .. ....+..+.+++ ...++. +. ++.+.+|+...........
T Consensus 357 ~~~~~----------------------~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 357 DLRTG----------------------KPLKT-LE---GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred ecCCC----------------------ceeEE-ec---CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc
Confidence 76531 10000 10 112278889988 544444 44 8999999999888877776
Q ss_pred CCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCC
Q 002196 882 PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (954)
Q Consensus 882 ~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~D 948 (954)
.+...+..+.+++ ++..+++++.++.+++|+..+ . ... ..+.++.........+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~----------~~~~~~~~~~~~~~~~ 463 (466)
T COG2319 410 GHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT-S-LKS----------VSFSPDGKVLASKSSD 463 (466)
T ss_pred CCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC-c-EEE----------EEECCCCcEEEecccc
Confidence 5547899999999 899999999999999999988 1 111 6677777666655443
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=1.9e-19 Score=179.85 Aligned_cols=209 Identities=15% Similarity=0.168 Sum_probs=166.6
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC----ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeE
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKI 533 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (954)
...-+.+.|++++|+|...+-++++|..-|.|-+||+.+. ..+..+..|..+|.++.|+|... ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4566889999999999877447999999999999999633 24567888999999999999776 689999999999
Q ss_pred EEEeCCCCCceeEeeC--CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE-EEEEecCCCCCeEEEEEeCCC
Q 002196 534 KAWLYDNLGSRVDYDA--PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTK 610 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 610 (954)
++-|++.......+.. ....+.++.|+.+...++.+..-+ .+.+||.+++.. ...+..|.. .|++++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G----~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG----NFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc----ceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987655444443 444778889998888777775422 488999998765 555566666 89999999976
Q ss_pred -CEEEEEECCCeEEEEECCCCceeE--EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 611 -NRFLAAGDEFMIKFWDMDNVNLLA--SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 611 -~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
.+++++|.|++++|||++.-.... .+..-.|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 578889999999999998633222 23333556789999999988779999999999999974
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=4.6e-17 Score=184.57 Aligned_cols=369 Identities=22% Similarity=0.376 Sum_probs=279.4
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eEEEeccCCC-CeEEEeeeccCCcc-EEEEEec-CCeE
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHES-PVYSICPHHKENIQ-FIFSTAT-DGKI 533 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~s~-dg~i 533 (954)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. ....+..+.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567889999999999998 68888899999999998887 6777776443 77777774 44444 5555445 9999
Q ss_pred EEEeCCC-CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-
Q 002196 534 KAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN- 611 (954)
Q Consensus 534 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 611 (954)
.+|+... .........+...+..++|+|++..+++++. .+..+.+|+...+..+..+.+|.. .+.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999987 6677778888889999999999997777753 244599999999888888888766 899999999998
Q ss_pred EEEEEECCCeEEEEECCCCceeE-EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccccccee
Q 002196 612 RFLAAGDEFMIKFWDMDNVNLLA-SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 690 (954)
.+++++.|+.|++||...+..+. .+..+.. .. ...|++++..+++++.|+.+++|+..........+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 55555899999999998777777 5655532 32 22899999899999999999999987652201000
Q ss_pred cchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEec
Q 002196 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (954)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~ 770 (954)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEE
Q 002196 771 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (954)
Q Consensus 771 ~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~ 850 (954)
.+|...+.++.|+|++..+++++.|+.+.+|++..... ..... ...|...+..+.
T Consensus 281 --~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~ 335 (466)
T COG2319 281 --SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLS 335 (466)
T ss_pred --ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEE
Confidence 11456788889999988888888888899997553211 00000 012566788888
Q ss_pred eccCCCeEEEe-c-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEE-EecCccEEEEeccccceEEEecCCc
Q 002196 851 LSKNDSYVMSA-S-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI-GMEDSSIQIYNVRVDEVKTKLKGHQ 927 (954)
Q Consensus 851 ~s~dg~~la~~-s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~las-gs~dg~i~iwd~~~~~~~~~~~~h~ 927 (954)
|.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..++. +..++.+.+|+............+.
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 84343566655 4 8889999998877333333222 289999999 7 55555 8899999999999998887777654
Q ss_pred cceeEEEEecCCCeEEEecCCcceec
Q 002196 928 KRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 928 ~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
..+....+++++..+++++.++++++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEE
Confidence 78999999999999999999888764
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=182.61 Aligned_cols=289 Identities=12% Similarity=0.160 Sum_probs=218.1
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE-EEEEEcCCEEEEEEeeCCcc-eee
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL-FGVAYSKHIVHLYTYHGGDE-LRN 455 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-l~s~~~dg~i~iwd~~~~~~-~~~ 455 (954)
...++|||....+.... + +-......+.++.|+....+ +++.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--------------~---~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--------------Y---VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--------------c---ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 34699999877654321 0 01112234999999987652 23335677899997543311 111
Q ss_pred eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEE
Q 002196 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (954)
Q Consensus 456 ~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~i 535 (954)
.....+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1112222 233333333334 79999999999999999888888999999999999988765 79999999999999
Q ss_pred EeCCCCCceeEeeCC-CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC-CEE
Q 002196 536 WLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRF 613 (954)
Q Consensus 536 wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 613 (954)
..+.+......+... +..|.-+.|+|..+++++...+ ++.|.+||.....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999987777777665 3466789999999888776543 45699999988888777665555588999999976 567
Q ss_pred EEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecch
Q 002196 614 LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVAS 693 (954)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 693 (954)
++.|.|..|++||.........+.. ..+...++|+++|.+|+.|...|.|..||+.....++..+..|...|..+++
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred EEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 7889999999999998777766654 3367899999999999999999999999999888999999999998888765
Q ss_pred hc
Q 002196 694 AA 695 (954)
Q Consensus 694 ~~ 695 (954)
..
T Consensus 302 q~ 303 (673)
T KOG4378|consen 302 QP 303 (673)
T ss_pred ee
Confidence 43
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=176.31 Aligned_cols=272 Identities=17% Similarity=0.271 Sum_probs=194.0
Q ss_pred CCcceEEEecCCCCeeEEEEcCCC-CeEEEEEEcCCeEEEEeCCCCceeee-eeeEEEeccCCCccccccccCCCCCCeE
Q 002196 345 LPKTVVMTLNQGSAVKSMDFHPVQ-QILLVVGTNMGDVMLWEVGSRERIAV-KSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g-~~ll~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
.|......+.|.+.|+-+.-++-+ ..+.|+=+..|.|.||++...-.... ....+-+ ........+.+|...=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 455556667788888888888875 33666667789999999864321110 0000000 00111223678999999
Q ss_pred EEEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC---c
Q 002196 423 RVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---T 498 (954)
Q Consensus 423 ~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~---~ 498 (954)
.++|||- ...|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||..+. +|++||.||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999993 335788877788999999887543333357789999999999999887 7999999999999999988 3
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
++.+ ++|.+.|+.|.|+... .+|++|+.||+++|||++..+
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~------------------------------------ 335 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFK------------------------------------ 335 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhcc------------------------------------
Confidence 3433 7899999999998765 489999999999999987421
Q ss_pred EEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCc----------------eeEEEecCCC
Q 002196 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN----------------LLASIDADGG 641 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~ 641 (954)
.++++..|+.|.. +|+++.|+|.. ..|+++|.|..|.+||+.-.. +.+.+-.|.+
T Consensus 336 -------~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG 407 (440)
T KOG0302|consen 336 -------SGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG 407 (440)
T ss_pred -------CCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc
Confidence 1234555666666 89999999865 567777899999999985321 1122334445
Q ss_pred CCCcceEEECCC-CCEEEEEeCCCcEEEE
Q 002196 642 LQASPCIRFNKE-GILLAVSTNDNGIKIL 669 (954)
Q Consensus 642 ~~~v~~v~~s~~-~~~l~s~~~dg~i~iw 669 (954)
...+..+.|++. ..++++.+.|| +.||
T Consensus 408 Qke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 408 QKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 567889999984 35777777776 3444
No 162
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.3e-19 Score=171.39 Aligned_cols=408 Identities=12% Similarity=0.124 Sum_probs=258.6
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 502 (954)
-+.|||+|+++|+++.- .+.|-|.++-+... +..--..|..+.|..|... .+.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 67788887765443 1122356888999988875 466778899999999999888888
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
+.....++.+++|+|++. ..+.+...|-.|.+|.+.+..... .......+..++|+|||++.+.++.- +-..++.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 988899999999998774 677788889999999998755433 33345567899999999998887642 222233333
Q ss_pred eCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 583 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
.-.....++.+..... ..+.+.|+|||+.+++ ||---.-.+..... .-.+..++|+|.+++|++|+.
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEeecc
Confidence 3333445555555444 5678899999988774 44222112112211 125778999999999999999
Q ss_pred CCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccc
Q 002196 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (954)
Q Consensus 663 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (954)
|+.+|+.+--+- +....+- |-..+.
T Consensus 231 D~~lrvlnh~tW-k~f~efl-hl~s~~----------------------------------------------------- 255 (447)
T KOG4497|consen 231 DQMLRVLNHFTW-KPFGEFL-HLCSYH----------------------------------------------------- 255 (447)
T ss_pred chhhhhhceeee-eehhhhc-cchhcc-----------------------------------------------------
Confidence 999998764332 1111110 110000
Q ss_pred cccccccc-ccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCC
Q 002196 743 IADEAVEK-SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQA 821 (954)
Q Consensus 743 vs~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~ 821 (954)
|-+ ..++.-.. . . ..-.-.++.|.|..- ...+|...... ......-
T Consensus 256 -----dp~~~~~~ke~~-------~---~----~ql~~~cLsf~p~~~---------~a~~~~~se~~-----YE~~~~p 302 (447)
T KOG4497|consen 256 -----DPTLHLLEKETF-------S---I----VQLLHHCLSFTPTDL---------EAHIWEESETI-----YEQQMTP 302 (447)
T ss_pred -----Cchhhhhhhhhc-------c---h----hhhcccccccCCCcc---------ccCccccchhh-----hhhhhcc
Confidence 011 01110000 0 0 000112333433221 01111100000 0000000
Q ss_pred ccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecC---CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCc
Q 002196 822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898 (954)
Q Consensus 822 i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sd---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~ 898 (954)
+++ ...++.. ..+. ..-.+.-++||+|..++|+-.| +.+.+||+...+....+. ...+|....|.| ...
T Consensus 303 v~~---~~lkp~t-D~pn--Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~p 374 (447)
T KOG4497|consen 303 VKV---HKLKPPT-DFPN--PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRP 374 (447)
T ss_pred eee---ecccCCC-CCCC--cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCc
Confidence 000 0000000 1111 3456778999999999999986 569999998877666655 567899999999 677
Q ss_pred eEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCc
Q 002196 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (954)
Q Consensus 899 ~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg 949 (954)
.|+.......+++|......++..- +..-.|..+.|.-+|..++-.|.|.
T Consensus 375 rL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 375 RLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred eEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCc
Confidence 7777777778999998765555532 2336799999999999999999885
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-19 Score=180.40 Aligned_cols=291 Identities=13% Similarity=0.177 Sum_probs=210.0
Q ss_pred EEEEecCCeEEEEeCCCCCceeEeeCC--CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC--CeE--EEEEecCC
Q 002196 524 IFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GAV--KRTYHGLG 597 (954)
Q Consensus 524 l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~ 597 (954)
+..++....+++||.........+..+ ...+.++.|+.... |++++..+ +..+++|.-.. ++. +....+.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~g--dk~~~~~~K~g~~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAG--DKVMRIKEKDGKTPEVPRVRKLTGD- 80 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCC--ceeEEEecccCCCCccceeeccccc-
Confidence 334444567899998876554443332 33688999987664 66665543 55688885332 222 2223333
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCee
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 677 (954)
.-.|++......++++||..+.|+|||++...+.+.+..| ...|+++.++-...+||+++..|.|.|..+.++. .
T Consensus 81 --~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh--~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~ 155 (673)
T KOG4378|consen 81 --NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDH--QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-K 155 (673)
T ss_pred --hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCC--cceeEEEEecCCcceeEEeccCCcEEEEecccCc-c
Confidence 2344444445589999999999999999976666777755 6799999999999999999999999999988772 1
Q ss_pred EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 002196 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (954)
Q Consensus 678 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~ 757 (954)
...+..
T Consensus 156 tt~f~~-------------------------------------------------------------------------- 161 (673)
T KOG4378|consen 156 TTTFTI-------------------------------------------------------------------------- 161 (673)
T ss_pred ccceec--------------------------------------------------------------------------
Confidence 111110
Q ss_pred cccCCCceeEEecCCCCCccceEEEEEecCCceEE-EeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCccccccc
Q 002196 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL-ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836 (954)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~ 836 (954)
+....|+-+.|+|..+.++ +++++|.|.+||+... .++...
T Consensus 162 ----------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~----------------------sp~~~~ 203 (673)
T KOG4378|consen 162 ----------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM----------------------SPIFHA 203 (673)
T ss_pred ----------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----------------------Ccccch
Confidence 0123345677888776654 5667799999986532 222222
Q ss_pred CCCCCCCCCccEEEeccCCC-eEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEec
Q 002196 837 ISDTNPEDAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (954)
Q Consensus 837 ~~~~~~~~~v~~~~~s~dg~-~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~ 914 (954)
... |..+...++|||... +||+.+ |.+|.+||+.+.+....+. ...+.+.++|++ +|.+|++|...|.|..||+
T Consensus 204 ~~~--HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 204 SEA--HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred hhh--ccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCceEEEEec
Confidence 222 999999999999654 566667 9999999998777766665 466889999999 9999999999999999999
Q ss_pred cc-cceEEEecCCccceeEEEEecCC
Q 002196 915 RV-DEVKTKLKGHQKRITGLAFSNTL 939 (954)
Q Consensus 915 ~~-~~~~~~~~~h~~~V~~l~~s~dg 939 (954)
+. ...+.++..|...|++++|-|.-
T Consensus 280 R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 280 RSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccCCCCceEeeecccceeEEEeeecc
Confidence 86 46788999999999999997654
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=176.41 Aligned_cols=175 Identities=21% Similarity=0.374 Sum_probs=146.1
Q ss_pred CcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 346 ~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
....+.+++ |.+.=+.++|||-..-.|++|..-+.|++|...+|..... ...+.+|+..|-.+
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDL 263 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhh
Confidence 345566666 9999999999994333467888889999999998765432 12256799999999
Q ss_pred EEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC---CceE
Q 002196 425 MWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQ 500 (954)
Q Consensus 425 ~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~---~~~~ 500 (954)
+|||. ...||+|+.||+|+|||++.+...... ..+.|.+.|+.+.|+.+-. +|++|+.||+++|||++. ++++
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence 99995 568999999999999999998544333 3488999999999998877 799999999999999875 6788
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 540 (954)
..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus 341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 99999999999999999877 6889999999999999864
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.2e-19 Score=169.98 Aligned_cols=251 Identities=20% Similarity=0.279 Sum_probs=181.0
Q ss_pred ccCCCCCCeEEEEEcc----C-CCEEEEEEcCCEEEEEEeeCCcceeeeeee--ecccCCEEEEEEecCCC--ceEEEEE
Q 002196 413 LSSDYTASVNRVMWSP----D-GTLFGVAYSKHIVHLYTYHGGDELRNHLEI--EAHVGSVNDLAFSYPNK--QLSVVTC 483 (954)
Q Consensus 413 ~~~~h~~~V~~l~~sp----d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~--~~~l~s~ 483 (954)
+..+|+.+|..++|++ + -+.+|++ ....+.+|.......++....+ ..|......++|+-|.. ..+++.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatv-G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATV-GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEe-CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4568999999999996 2 3345555 4456888987654423322122 24777888999987633 2378899
Q ss_pred cCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe---eCCCCceEEEEEC
Q 002196 484 GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYS 560 (954)
Q Consensus 484 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s 560 (954)
|.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|..|++|++++..++..+ .+|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999999766 79999999999999999999988875 4566799999999
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE----------------------------ecCCCCCeEEEEEeCCCCE
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTY----------------------------HGLGKRSVGVVQFDTTKNR 612 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~----------------------------~~~~~~~i~~~~~~~~~~~ 612 (954)
++|.+++++|.|. .+++|++...+....+ .-|. ..|.++.|- |++
T Consensus 191 ~~gd~i~ScGmDh----slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr-nyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 191 LDGDRIASCGMDH----SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR-NYVDCVRWF--GDF 263 (385)
T ss_pred CCCCeeeccCCcc----eEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc-chHHHHHHH--hhh
Confidence 9999999999855 4999999843211100 0111 133344443 578
Q ss_pred EEEEECCCeEEEEECC-CCcee-------------EEEecCCCCCCcceE--EECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 613 FLAAGDEFMIKFWDMD-NVNLL-------------ASIDADGGLQASPCI--RFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 613 l~~~~~dg~i~iwd~~-~~~~~-------------~~~~~~~~~~~v~~v--~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+++-+-++.|..|... -++.+ ..+..+ ...|.-+ +|.|-+++||.|...|.|.+||+...
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~--~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP--MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC--ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 9998988999999872 22221 222222 2233333 44556778888888888888888765
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.1e-19 Score=169.46 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=208.6
Q ss_pred eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc-------cCCC
Q 002196 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-------PDGT 431 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pdg~ 431 (954)
...+.|||||. -+.+-+.|..+.+|++...-.-....-. ...+....+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45789999999 5567788999999998643211100000 00000001111234677777775 5788
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccC---CEEEEEEecCCCceEEEEEcCCCeEEEEEC-CCCceEE--Ee--
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG---SVNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VTGTKQY--IF-- 503 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~--~~-- 503 (954)
++|+.+.+.-|++||.-+|+...... .-.|.. ...+++|+|||.+ |+ ++...+|+++|+ +.|+.-. ..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGeq--lf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGEQ--LF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCCe--Ee-ecccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999998554222 223433 4568999999994 44 456689999998 5554321 11
Q ss_pred ---ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 504 ---EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 504 ---~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
.+..+-+.+++|+|... ..++.++...++-+|.-....+...+..|++.|+.+.|.++|+.|+++..- +..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence 12366788899998765 689999999999999888888888888999999999999999999998743 44699
Q ss_pred EEeCCCC-eEEEEEecCCCCCeEEE--EEeCCCCEEEEEECCCeEEEEECCC-CceeEEEecCCCCCCcceEEECCCCCE
Q 002196 581 EWNESEG-AVKRTYHGLGKRSVGVV--QFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGIL 656 (954)
Q Consensus 581 iwd~~~~-~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 656 (954)
.||++.- .++..+..|....-..| ...|++++|++|+.||.|++||+++ +..+..+..+ ...++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccce
Confidence 9999864 55666666543222333 4568999999999999999999998 7766666654 668999999999888
Q ss_pred EEEEeCC
Q 002196 657 LAVSTND 663 (954)
Q Consensus 657 l~s~~~d 663 (954)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887643
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.5e-18 Score=170.16 Aligned_cols=237 Identities=15% Similarity=0.244 Sum_probs=187.9
Q ss_pred ccccCCCCCCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeCCcce----eeeeeeecccCCEEEEEEecCCCceEEEEEcC
Q 002196 411 ASLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (954)
Q Consensus 411 ~~~~~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~ 485 (954)
.....||+++|..++|+| +...||+||.|.+|.||.+..+... .....+.+|...|.-++|+|...+ +|++++.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~ 152 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGS 152 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccC
Confidence 345789999999999999 7889999999999999998755332 234478999999999999999888 7999999
Q ss_pred CCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC-ceEEEEECCCCC
Q 002196 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGA 564 (954)
Q Consensus 486 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~ 564 (954)
|.+|.+||+.+|+.+.++. |...|++++|+.++ .++++.+.|..|++||.++++....-..|.+ ....+.|-.+|.
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 9999999999999998888 99999999998665 7999999999999999999887776655544 566777888998
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCe---EEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCce-eEEEecC
Q 002196 565 RLFSCGTNKEGESYLVEWNESEGA---VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDAD 639 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~ 639 (954)
+++.+.++-.+..+-+||...-+ ....+.... .|.---+.+|.+.++.+| .|+.|+.|.+.+..+ ++-+...
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence 77777777778899999976543 233344333 465556788888887777 899999999987653 3333332
Q ss_pred CCCCCcceEEECCCC
Q 002196 640 GGLQASPCIRFNKEG 654 (954)
Q Consensus 640 ~~~~~v~~v~~s~~~ 654 (954)
....+-..+.|-|..
T Consensus 307 ~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 307 SSKEPQRGMGFMPKR 321 (472)
T ss_pred ccCCccccccccccc
Confidence 334455677777753
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=2.5e-18 Score=164.17 Aligned_cols=280 Identities=13% Similarity=0.168 Sum_probs=203.3
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC------------eEEEEEecCCCCCeEEEEEe-------CCCCEE
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------------AVKRTYHGLGKRSVGVVQFD-------TTKNRF 613 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~~~~~~~~~i~~~~~~-------~~~~~l 613 (954)
-...+.|+|||..|++.+.+. .+.+|++... .....++-..+..|...+|- |+..++
T Consensus 51 f~kgckWSPDGSciL~~sedn----~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDN----CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhccceeCCCCceEEeecccC----eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 445688999999999987644 4999987421 11122222233356666664 677899
Q ss_pred EEEECCCeEEEEECCCCceeEEEecCCCCCC---cceEEECCCCCEEEEEeCCCcEEEEEcc-CCCeeEEEeccccccce
Q 002196 614 LAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKILANA-DGIRLLRTVESRTFDAS 689 (954)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~ 689 (954)
++.+.+.-|++||.-+|+....+..-.+... ..+++|+|||..|++| ....|+++|+. .|.. . .+.
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~-c--------~vy 196 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD-C--------PVY 196 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC-C--------cch
Confidence 9999999999999999999888876544433 4589999999999865 56799999984 3310 0 000
Q ss_pred ecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEe
Q 002196 690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769 (954)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~ 769 (954)
....
T Consensus 197 -----------------------------------------------------------------~t~~----------- 200 (406)
T KOG2919|consen 197 -----------------------------------------------------------------TTVT----------- 200 (406)
T ss_pred -----------------------------------------------------------------hhhh-----------
Confidence 0000
Q ss_pred cCCCCCccceEEEEEecCCc-eEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccE
Q 002196 770 LPDNLTAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 848 (954)
Q Consensus 770 ~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~ 848 (954)
....+..+-+.+++|+|-.. .+++++-...+-||.. ..+.++.. +-+ |.+.|+.
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~----------------------~~~~pl~l-lgg--h~gGvTh 255 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND----------------------DGRRPLQL-LGG--HGGGVTH 255 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEec----------------------CCCCceee-ecc--cCCCeee
Confidence 00012356788999999654 7788877777777642 22333332 334 9999999
Q ss_pred EEeccCCCeEEEec--CCeEEEEEccc-ccEEEeeCCCCC-CeeEEE--ecCCCCceEEEEecCccEEEEeccc-cceEE
Q 002196 849 FALSKNDSYVMSAS--GGKISLFNMMT-FKTMTTFMPPPP-AATFLA--FHPQDNNIIAIGMEDSSIQIYNVRV-DEVKT 921 (954)
Q Consensus 849 ~~~s~dg~~la~~s--dg~i~iwd~~~-~~~~~~~~~h~~-~v~~l~--~sp~d~~~lasgs~dg~i~iwd~~~-~~~~~ 921 (954)
++|.+||+.|.+|. |.+|-.||+.. ..++..+..|.+ .=..|- ..| ++++||+|+.||.|++||+++ |..+.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCccc
Confidence 99999999999998 89999999864 566677777765 333444 467 899999999999999999998 78788
Q ss_pred EecCCccceeEEEEecCCCeEEEecCC
Q 002196 922 KLKGHQKRITGLAFSNTLNVLVSSGAD 948 (954)
Q Consensus 922 ~~~~h~~~V~~l~~s~dg~~l~s~s~D 948 (954)
.+..|+.-|+.+++.|--.+++|++.-
T Consensus 335 v~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccccccccceecCcccceeeeccCc
Confidence 888899999999999998888887753
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=173.89 Aligned_cols=262 Identities=12% Similarity=0.184 Sum_probs=188.5
Q ss_pred CCeeEEEEcCC-------CCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCc------cccccccCCCCCCeEE
Q 002196 357 SAVKSMDFHPV-------QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM------PLQASLSSDYTASVNR 423 (954)
Q Consensus 357 ~~V~~~~~sp~-------g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~ 423 (954)
..-.|++|... |+ ++|.|+.|..|.|||+.-...+.- ..-+..... ........+|+..|..
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P----~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP----CVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc----ceeechhhhhhhhhhcccccccccchHHHHH
Confidence 34456666543 34 899999999999999864322210 001110000 0011124579999999
Q ss_pred EEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE-E
Q 002196 424 VMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-Y 501 (954)
Q Consensus 424 l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~ 501 (954)
++|+.+ .+.||+||.|.+|++||+.++++.. ++..|.+.|.++.|+|.... +|++|+.|++|.+.|.+..... .
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCc
Confidence 999985 5688999999999999999998876 67789999999999998877 7999999999999999853222 2
Q ss_pred EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC-CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 502 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
.++ ..+.|..+.|.+... ..++++..||+++-+|++.. ++......|..+|.++++++.-..+++.+ ..+..+.
T Consensus 325 ~wk-~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vk 399 (463)
T KOG0270|consen 325 EWK-FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVK 399 (463)
T ss_pred eEE-eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEE
Confidence 222 457788999988776 67888899999999999987 56778899999999999998766554432 2255699
Q ss_pred EEeCCCCeE--EEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCcee
Q 002196 581 EWNESEGAV--KRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 581 iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
+|++..... +..-...-+ ...|.++.|+-. .++.||..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999765433 221111111 355667777764 4566777888999999876544
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=179.02 Aligned_cols=270 Identities=14% Similarity=0.198 Sum_probs=209.3
Q ss_pred CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 552 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
+.|..++|-|||..|+.+..+ .+.+||...|..+.++++|.+ .|++++++.+|+.+++|+.|..|.+|.-.-..
T Consensus 13 hci~d~afkPDGsqL~lAAg~-----rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-----RLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred cchheeEECCCCceEEEecCC-----EEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 378899999999998887643 399999999999999999988 99999999999999999999999999864322
Q ss_pred eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCC
Q 002196 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (954)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 711 (954)
.+ .. .|...|.|+.|+|-...|++++-. ..-+|..... .
T Consensus 87 ~L-kY---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~----------------------------------- 125 (1081)
T KOG1538|consen 87 IL-KY---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-S----------------------------------- 125 (1081)
T ss_pred ee-ee---ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-h-----------------------------------
Confidence 22 12 346689999999999999988754 4556654332 0
Q ss_pred ccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceE
Q 002196 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 791 (954)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 791 (954)
+.- ......+.+.+|..||+++
T Consensus 126 ---------------------------------------V~K-------------------~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 126 ---------------------------------------VSK-------------------HKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred ---------------------------------------HHh-------------------hhhheeEEEeeecCCCcEE
Confidence 000 0024568889999999999
Q ss_pred EEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCC-----CeEEEec-CCe
Q 002196 792 LALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND-----SYVMSAS-GGK 865 (954)
Q Consensus 792 ~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-----~~la~~s-dg~ 865 (954)
+.|-.||+|.+-+- .|......-...+.+.+|.+++|+|.. ..+++.. ..+
T Consensus 148 alG~~nGTIsiRNk-----------------------~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNK-----------------------NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred EEeccCceEEeecC-----------------------CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 99999999998531 122111111112478999999999964 3567777 677
Q ss_pred EEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEe
Q 002196 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (954)
Q Consensus 866 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 945 (954)
+.++.+. |+.+..-+.-.-...|+.+-+ +|.++..|+.|+.+++|- +.|-.+.++.....+|+.++..|++++++.|
T Consensus 205 LSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 205 LSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 8888874 565554443445578999999 999999999999999998 5577788887788899999999999999999
Q ss_pred cCCccee
Q 002196 946 GADSQVR 952 (954)
Q Consensus 946 s~Dg~I~ 952 (954)
..||+|.
T Consensus 282 CqDGTiA 288 (1081)
T KOG1538|consen 282 CQDGTIA 288 (1081)
T ss_pred EccCeee
Confidence 9999984
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=6.2e-18 Score=165.81 Aligned_cols=246 Identities=14% Similarity=0.167 Sum_probs=188.4
Q ss_pred CCCEEEEE---EcCCEEEEEEe-eCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-------
Q 002196 429 DGTLFGVA---YSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG------- 497 (954)
Q Consensus 429 dg~~l~s~---~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~------- 497 (954)
+.++||.. +..|...+.-+ ++|+.-.....+.+|+++|..++|+|-+.. .|++||.|.+|.||++-.+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45566543 22333333333 334433334457899999999999998877 7999999999999998754
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
+++..+.+|...|.-+.|+|... +.|++++.|.+|.+|++.+++....+. |...|+++.|+.||.++++.+.|+.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk--- 196 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK--- 196 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce---
Confidence 35678899999999999999876 799999999999999999999888877 8889999999999999999987664
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (954)
|++||.++++.+..-.+|.+..-..+.|-.++..+-+|- .+..+-+||..+-+....+..-.....|.---|.+|.
T Consensus 197 -vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 197 -VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred -eEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence 999999999999988888776667777888888444442 6789999998764433222222223456666788888
Q ss_pred CEEEEEe-CCCcEEEEEccCCCeeEEEe
Q 002196 655 ILLAVST-NDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 655 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 681 (954)
.++..++ .|+.||.|++.+....+..+
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEe
Confidence 8776554 58999999998764444444
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.3e-19 Score=197.56 Aligned_cols=262 Identities=13% Similarity=0.152 Sum_probs=203.2
Q ss_pred eEEEecCCCCeeEEEEcCCCCe---EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 349 VVMTLNQGSAVKSMDFHPVQQI---LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~---ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
.+..+.-..+-+.++|.+.|.. +||.|..||.|.+||...-..- ........+..|++.|..+.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-------------~~~~~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-------------ASEEVLATKSKHTGPVLGLD 123 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC-------------cchHHHhhhcccCCceeeee
Confidence 3344445668899999998876 6999999999999998762000 00001122567999999999
Q ss_pred EccCC-CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 426 WSPDG-TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 426 ~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
|++.. ++||+|+.||.|.|||+..-+...... -..-.+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+.
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccc
Confidence 99965 599999999999999998744332111 1224567999999988776 69999999999999999998888887
Q ss_pred cCCC--CeEEEeeeccCCccEEEEEecCC---eEEEEeCCCCCc-eeEeeCCCCceEEEEECCCC-CEEEEEEeCCCCce
Q 002196 505 GHES--PVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGES 577 (954)
Q Consensus 505 ~~~~--~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~ 577 (954)
.+.. .+..+.|+|+.. ..+++++.|. .|.+||++.... ...+..|...|.++.|++.+ +++++++.|+
T Consensus 202 ~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~---- 276 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN---- 276 (1049)
T ss_pred cCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC----
Confidence 6655 467899999876 4566665543 499999987654 44567888899999999977 7788887654
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCc
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 631 (954)
.|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 499999999999999988554 899999999876 77778899999999987644
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=6.4e-18 Score=166.71 Aligned_cols=317 Identities=14% Similarity=0.206 Sum_probs=210.5
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-----e----eEeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-----R----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
..+|.++.|..... ..++||+.|..|++|-+..... . ..+..|...|+++.|+|+|..|++|+.++
T Consensus 13 ~~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g---- 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG---- 87 (434)
T ss_pred CCceEEEEeccCcc-cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc----
Confidence 45678888876553 3899999999999998764322 1 13456777999999999999999998644
Q ss_pred EEEEEeCC--------C--------CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCC
Q 002196 578 YLVEWNES--------E--------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 578 ~i~iwd~~--------~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 641 (954)
.+.+|-.. + ....+.+.+|.. .+..++|+|++.++++++.|..+++||+..|.....+..|.
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~- 165 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE- 165 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-
Confidence 48999765 2 223445566655 89999999999999999999999999999999999998774
Q ss_pred CCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccc
Q 002196 642 LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA 721 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (954)
..+..++|.|-++++++-+.|...+.+.+... +..+.. ...+... .
T Consensus 166 -~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~-~~~~~~---~~~~m~~---------------~-------------- 211 (434)
T KOG1009|consen 166 -HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK-QVIKRH---GLDIMPA---------------K-------------- 211 (434)
T ss_pred -cccceeecchhhhhhhhhccCcccceeeeeee-eeeeee---eeeEeee---------------c--------------
Confidence 48999999999999999999987777766543 222211 1000000 0
Q ss_pred ccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec----C
Q 002196 722 PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS----N 797 (954)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----d 797 (954)
... .......+++.-.+ -..-...++|+|||..+++.+. +
T Consensus 212 ------~~~--------------~~e~~s~rLfhDeT----------------lksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 212 ------AFN--------------EREGKSTRLFHDET----------------LKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred ------ccC--------------CCCcceeeeeecCc----------------hhhhhhhcccCCCCcEEEcccceeeeC
Confidence 000 00001122222111 1233456889999998877553 2
Q ss_pred CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEec------------------cCCCeEE
Q 002196 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS------------------KNDSYVM 859 (954)
Q Consensus 798 g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s------------------~dg~~la 859 (954)
+.+... +..+++.+.-..-...+++ ...+...+.|+ |-+-.+|
T Consensus 256 ~~~~~n-----------------~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 256 GGVFRN-----------------TSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred Cceeec-----------------eeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 222110 0001111100000011222 33344444443 3344567
Q ss_pred EecCCeEEEEEcccccEEEeeC-CCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceE
Q 002196 860 SASGGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (954)
Q Consensus 860 ~~sdg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~ 920 (954)
.+.-+.|+|||.++..++.... -|-..++.++|++ ||..|+..|.||...+-.++..++-
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhcc
Confidence 7778999999999887776654 4888999999999 9999999999999888888776543
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.5e-19 Score=179.26 Aligned_cols=299 Identities=19% Similarity=0.281 Sum_probs=233.3
Q ss_pred eEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 349 ~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+...|. |.+.|+.|.|+..|. +|++|+.|..|.+||+..++.... ...+|...|....|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhcc
Confidence 334455 999999999999999 899999999999999998876532 356899999999999
Q ss_pred c--CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe--
Q 002196 428 P--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-- 503 (954)
Q Consensus 428 p--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 503 (954)
| +.+-+++++.||.+++=.+...........+..|.++|.-++.-|+... -|.+++.|+.+.-+|++.+.+...+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~c 273 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVC 273 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeee
Confidence 8 5678999999999999877654444444467789999999999999887 6999999999999999987654433
Q ss_pred -ccCCC---CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce------eEee------CCCCceEEEEECCCCCEEE
Q 002196 504 -EGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR------VDYD------APGHSSTMMAYSADGARLF 567 (954)
Q Consensus 504 -~~~~~---~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~s~~g~~l~ 567 (954)
..+.. ...+++..|... ..+++++.|..+++||.+..... ..+. ...-.|++++|+.++.-|+
T Consensus 274 r~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 22333 457788887654 58999999999999998754332 1111 1223789999998887777
Q ss_pred EEEeCCCCceEEEEEeCC--CC----------eEEEE-EecCCC-CCeEEE-EEeCCCCEEEEEECCCeEEEEECCCCce
Q 002196 568 SCGTNKEGESYLVEWNES--EG----------AVKRT-YHGLGK-RSVGVV-QFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~--~~----------~~~~~-~~~~~~-~~i~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (954)
+...+.. |+++... .| ..+.. +++|.. ..|..+ -|.|...++++|+.-|.|.||+-.+++.
T Consensus 353 aSYnDe~----IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 353 ASYNDED----IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eeecccc----eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 7665433 7887533 23 22333 777744 245555 4678889999999999999999999999
Q ss_pred eEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+..+.+..+ .|+|+.-+|--.+||+++-|..|+||...+.
T Consensus 429 i~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 429 IRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 999988755 8999999999999999999999999987543
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-18 Score=165.81 Aligned_cols=293 Identities=13% Similarity=0.143 Sum_probs=201.8
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--C-CceE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--G-HSST 555 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~-~~v~ 555 (954)
.++++...|+|++||..+++.+..|+++...++.+.|........+.+|+.||+|++||++.......+... . .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 588888899999999999999999999999999999987544578999999999999999987765544332 2 3567
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE-EEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCc--
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN-- 631 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 631 (954)
+++..-.++.++++..-...+..+.+||.+..+. ++.+...+...|+++.|+|.. +.|++|+.||.|.+||++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777767788888765555567899999998866 666554444499999999965 789999999999999997642
Q ss_pred --eeEEEecCCCCCCcceEEECCCC-CEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCC
Q 002196 632 --LLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (954)
Q Consensus 632 --~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 708 (954)
++.++ .+...|.++.|..++ +.|.+-+..+...+|+++.+... ..+..........
T Consensus 202 DaL~~vi---N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~-~~~~~~~~~~~d~----------------- 260 (376)
T KOG1188|consen 202 DALLHVI---NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE-TWLENPDVSADDL----------------- 260 (376)
T ss_pred hhHHHhh---cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh-hcccCccchhhhH-----------------
Confidence 22233 234568999999877 45777888999999999988422 2221110000000
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCcccccccc-cccccccccccccCCCceeEEecCCCCCccceEEEEEecC
Q 002196 709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA-VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 787 (954)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 787 (954)
...+.| -+--+.....+....+.++. -+...++.+.................+|..-|+++.|...
T Consensus 261 ---r~~~~~----------dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 261 ---RKEDNC----------DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred ---Hhhhhh----------hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 000000 00001111122333333322 4556666555322233333333444568888999999999
Q ss_pred CceEEEeecCCeEEEeec
Q 002196 788 GLAILALASNAVHKLWKW 805 (954)
Q Consensus 788 g~~l~~~~~dg~v~lw~~ 805 (954)
+..+.+|++||.+.+|..
T Consensus 328 ~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceeeccCCCceEEEEec
Confidence 999999999999999974
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=146.60 Aligned_cols=281 Identities=18% Similarity=0.231 Sum_probs=193.9
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
.|..-+|+|.++ +|++|..+|+|.+..+.+-..-.. .+..........+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 466778999998 789999999999999865321110 001111112247899999999998 55677764
Q ss_pred cCCEEEEEEeeCCcc-e--eee--eeeeccc-----CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 438 SKHIVHLYTYHGGDE-L--RNH--LEIEAHV-----GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~-~--~~~--~~~~~h~-----~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
||.|+=|....... . +.. .....|. -.|++|...|..+ -++.++.|+.++-||+++|+..+++++|+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998754322 0 000 0111222 3589999998877 46777799999999999999999999999
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC----------CceEEEEECCCCCEEEEEEeCCCCce
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG----------HSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
+.|.++.-.... ..+++|++||++++||.++.+....+.... ..|.+++. +..++++++..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp----- 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP----- 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-----
Confidence 999999863333 479999999999999999988776544322 23444444 56688887632
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC-CE
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-IL 656 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~ 656 (954)
.+.+|.++..++...|.-.. .+..+.|. .+.++++++.+.|.-|.+. |.....++.. .....+..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEE
Confidence 38999999998888776543 57777786 4578888888899999874 4444444433 2345555555433 34
Q ss_pred EEEEeCCCcEEEE
Q 002196 657 LAVSTNDNGIKIL 669 (954)
Q Consensus 657 l~s~~~dg~i~iw 669 (954)
|-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455556666554
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=160.90 Aligned_cols=275 Identities=13% Similarity=0.142 Sum_probs=195.7
Q ss_pred eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCCEEEEEEcCCEEEEEEe
Q 002196 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTY 447 (954)
Q Consensus 370 ~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~~~dg~i~iwd~ 447 (954)
..+|++...|.|++||..+++.+.. +++|...++.++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3788999999999999999887764 678899999999988 4678899999999999999
Q ss_pred eCCcceeeeeeeeccc-CCEEEEEEecCCCceEEEEEc----CCCeEEEEECCCCce-EEEe-ccCCCCeEEEeeeccCC
Q 002196 448 HGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCG----EDRVIKVWDAVTGTK-QYIF-EGHESPVYSICPHHKEN 520 (954)
Q Consensus 448 ~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~ 520 (954)
++......+ ...+|. .+..+++..-.++ ++++|. .|-.|.+||++..+. ++.+ ..|...|++++|+|+.+
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987655433 345555 4666777665555 566664 367899999998776 5544 56999999999999876
Q ss_pred ccEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC
Q 002196 521 IQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 521 ~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
+.|++||.||.|.+||+..... ......+...|.++.|..++ +.|.+.+..++ ..+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et----f~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET----FAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc----eeEEEccCCChhhcccCc
Confidence 7999999999999999876532 22333456679999999887 34666655433 899999888755544332
Q ss_pred CCC---------CeEEE-EEeC-CCCEEEEEEC-CCeEEEEECC---CC---ceeEEEecCCCCCCcceEEECCCCCEEE
Q 002196 597 GKR---------SVGVV-QFDT-TKNRFLAAGD-EFMIKFWDMD---NV---NLLASIDADGGLQASPCIRFNKEGILLA 658 (954)
Q Consensus 597 ~~~---------~i~~~-~~~~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (954)
.-. .-+-+ +.+| +...++.++. -++..++-+. ++ +.+..+.+ ++..-|+++.|...+.++.
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 100 00011 1223 3345555443 5555555443 22 33333433 2456788999999999999
Q ss_pred EEeCCCcEEEEEcc
Q 002196 659 VSTNDNGIKILANA 672 (954)
Q Consensus 659 s~~~dg~i~iwd~~ 672 (954)
+|+.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999864
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-17 Score=160.60 Aligned_cols=296 Identities=10% Similarity=0.138 Sum_probs=212.8
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
++|.+.|+++.||.+++ +||+|+.|..+++|.+...-...+ ..++.. .-..|.+.|.|++|....++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCee
Confidence 56999999999999988 889999999999999865322211 001110 12346799999999999999
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eE--EEeccCCCC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQ--YIFEGHESP 509 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~--~~~~~~~~~ 509 (954)
+.+|+.+++|...|+++.+.+... .-....+.|..+..+|..+ .+++.+.++.|.+||.+... .+ ..+......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred EecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 999999999999999998766521 1122334899999999977 79999999999999988654 22 222334455
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-------eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
...+.|+|... .+|++.+..+-+-+||.+........ ......-.++.|+|+|..+++.-... .-..|
T Consensus 197 F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~----~P~~~ 271 (609)
T KOG4227|consen 197 FYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK----CPLYF 271 (609)
T ss_pred ceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC----CCEEe
Confidence 67788888766 68999999999999999875543321 11111336788999999988864322 24567
Q ss_pred eCCCCeE-EEEEecCCC-----CCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-----------------------cee
Q 002196 583 NESEGAV-KRTYHGLGK-----RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-----------------------NLL 633 (954)
Q Consensus 583 d~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~ 633 (954)
|+.+.++ +.++..... ..+.+++|..+ ..+++|+.+-.|++|.+... +.+
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 8776443 333331111 13556777655 45999999999999987521 123
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
..+.+| ..-++.|.|+|...+|++.+-.+.+++|...
T Consensus 351 ~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 351 TVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 444544 6678999999999999999999999999754
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.7e-18 Score=174.75 Aligned_cols=250 Identities=14% Similarity=0.208 Sum_probs=190.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEee-----CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-----GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~ 488 (954)
+..|...|..++|.|....|++++.||++.+|+++ ....+.++.++.+|.++|.|++..++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56689999999999999999999999999999993 2334566778999999999999999999 6999999999
Q ss_pred EEEEECCC------C----ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--CCceEE
Q 002196 489 IKVWDAVT------G----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTM 556 (954)
Q Consensus 489 i~iwd~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~ 556 (954)
|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... .....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99995531 1 2345788999999999999877 5799999999999998766544 222221 223344
Q ss_pred EEECCCC-CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 557 MAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 557 ~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+.+-... .+.++... .++-.+++......+..+.... ...+..+..+|...+.+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 5543322 12222111 1112334444444444333211 12456678899999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++.+.....| ...++++++.|+|.+|++++.||.+++|.+...
T Consensus 521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999998876 668999999999999999999999999998665
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.7e-17 Score=164.89 Aligned_cols=242 Identities=14% Similarity=0.185 Sum_probs=165.8
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
.+.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+.+.. .-.+|...|.++.|.|....-++++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3789999999999999999999999999999999987665543 24689999999999997555479999999999999
Q ss_pred ECCCC----------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE----------eeCCCC
Q 002196 493 DAVTG----------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----------YDAPGH 552 (954)
Q Consensus 493 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~~~~ 552 (954)
|+... ...+.+..|...|..++..|.+. +.+.++++||+|+-+|++....... +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99842 34456678999999999877665 7899999999999999986432211 111112
Q ss_pred ceEEEEECCCCCE-EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC------CCeEEE-EEeCCCCEEEEEECCCeEEE
Q 002196 553 SSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVGVV-QFDTTKNRFLAAGDEFMIKF 624 (954)
Q Consensus 553 ~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~~~-~~~~~~~~l~~~~~dg~i~i 624 (954)
...++.++|...+ |++|+. +.+.++||.+.. +..+..... ....++ -|+|.+- ...+|.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~-- 269 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL-- 269 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCccccc--
Confidence 5678999997655 555443 556899995321 111111100 011112 1233221 1111110
Q ss_pred EECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
... ...++-++|+|+|.-|++.-....|+++|+..++.....+.+
T Consensus 270 --------~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 270 --------DRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred --------ccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 000 113567899999987776666678999999888655555443
No 181
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.5e-16 Score=163.24 Aligned_cols=462 Identities=11% Similarity=0.065 Sum_probs=273.9
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC------C
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------G 430 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g 430 (954)
..-.++.|+|.| ++|-|+. ..|.+-|..+-+.+.. +.-|...|+.+.|.|- +
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 346688999998 6777765 4688888887776654 5668999999999882 1
Q ss_pred ------CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC---CCceEEEEEcCCCeEEEEECCCCceEE
Q 002196 431 ------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 431 ------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
-.||++...|.|.+||...+..+. .+..|..++..++|-+. .+. +++.-.....+.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 257777888999999999887655 57788899999999763 334 56666677899999999999998
Q ss_pred EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC------CceeEeeCC-C------------C----------
Q 002196 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------GSRVDYDAP-G------------H---------- 552 (954)
Q Consensus 502 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~-~------------~---------- 552 (954)
..........|+.+.|-.. ..+..-+..|.+.+-+.-.. +....+... . .
T Consensus 150 k~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 8877677777788877655 34444455566655543211 111111111 0 0
Q ss_pred ---ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC--CEEEEEECCCeEEEEEC
Q 002196 553 ---SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 553 ---~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~ 627 (954)
....++|+|.-+.++.....+. +.++|++-..++....-..+ .+.-+.+-|++ ..+++.-.||.+.+|-.
T Consensus 229 fity~a~faf~p~~rn~lfi~~pre----llv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPRE----LLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEeccc----eEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 0123567887766665555443 99999988888777765544 55556676665 57888889999999976
Q ss_pred CC----------------CceeEEEecCCCCCCcceEEECCC-CCEEEEEeCCCcEEEEEccCCCeeEEEecccccccee
Q 002196 628 DN----------------VNLLASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (954)
Q Consensus 628 ~~----------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 690 (954)
+. ++....+...... ........|. ...++.--.+|.+.+|.+.++.-......+....+..
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~p 382 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLP 382 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccc
Confidence 54 2222222211111 1222333343 3444445567889999988662211111111111111
Q ss_pred cchhcc------ccCCccccccCCCCCccccccccc--cccccccccCCCCCCC-CCCcccccccccccccccccccccC
Q 002196 691 VASAAI------VKAPAIGTFGSANANVGTSLGERT--APAAAMVGMSNDSRNF-TDVKPKIADEAVEKSRIWKLTEITE 761 (954)
Q Consensus 691 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~lvs~~~d~~i~iw~~~~~~~ 761 (954)
..+... +.-..+...|+ .-+...|.+. .|......-.+.+... .....++.|...|+|.++|+.+...
T Consensus 383 f~f~~~~~~v~k~~l~~LS~dg~---h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v 459 (1062)
T KOG1912|consen 383 FDFNLSTKLVGKTSLISLSDDGS---HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAV 459 (1062)
T ss_pred ccccCceeehhhccccchhhcCC---CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhh
Confidence 111100 00011111110 1111112222 1222222222211111 2234567889999999999976433
Q ss_pred CCceeEEecCCCCCccceEEEEEecCCceEEEeecC--CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCC
Q 002196 762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (954)
Q Consensus 762 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d--g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~ 839 (954)
..... .|...|.++.|.-..+.+-.+.+. ....++ -..+.+-|..+|......-..
T Consensus 460 ~~~fs-------vht~~VkgleW~g~sslvSfsys~~n~~sg~v---------------rN~l~vtdLrtGlsk~fR~l~ 517 (1062)
T KOG1912|consen 460 AASFS-------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGV---------------RNDLVVTDLRTGLSKRFRGLQ 517 (1062)
T ss_pred hhhhc-------ccccceeeeeeccceeEEEeeeccccccccce---------------eeeEEEEEcccccccccccCC
Confidence 33222 388999999998777644333321 111111 012334466666544322111
Q ss_pred CCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccE
Q 002196 840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 876 (954)
Q Consensus 840 ~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~ 876 (954)
.....+|+.+..|..|+||+..- +.-+.+||+++..+
T Consensus 518 ~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred CCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 23678999999999999999998 88899999865443
No 182
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=152.45 Aligned_cols=403 Identities=11% Similarity=0.139 Sum_probs=236.3
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE-EcC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA-YSK 439 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-~~d 439 (954)
-++|||+|+ ++|+.+.. .+.|-|..+-+.... .---..|..+.|+.|.-+++.+ +.+
T Consensus 13 ~c~fSp~g~-yiAs~~~y-rlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGN-YIASLSRY-RLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCC-eeeeeeee-EEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 478999998 66776554 677777776554321 1123678889999998877665 678
Q ss_pred CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccC
Q 002196 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 519 (954)
+.|.+|++...+-.. .+.....++.+++|||||+. ++.+...|-.|.+|.+.+.+.... +-....+..++|++++
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDG 145 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCC
Confidence 899999998765444 45667788999999999987 688889999999999988765543 2223445778888765
Q ss_pred CccEEEEEecCCeEEEEeCCC---CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC
Q 002196 520 NIQFIFSTATDGKIKAWLYDN---LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 520 ~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
++.+.++.-.....+.+.. -.....+....-..+.+.|+|||..|++ ||.--.-.+..+..
T Consensus 146 --~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV-------------wd~~Leykv~aYe~- 209 (447)
T KOG4497|consen 146 --QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV-------------WDNVLEYKVYAYER- 209 (447)
T ss_pred --ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE-------------ecchhhheeeeeee-
Confidence 7777776532211111110 0111223333446678999999987765 44221112222222
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCe
Q 002196 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIR 676 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 676 (954)
+-.+..+.|+|.+++++.|+.|+.+++.+--+-+.+..+-. ...++ |-+..+...++. +
T Consensus 210 -~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh---l~s~~----------------dp~~~~~~ke~~-~ 268 (447)
T KOG4497|consen 210 -GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH---LCSYH----------------DPTLHLLEKETF-S 268 (447)
T ss_pred -ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc---chhcc----------------Cchhhhhhhhhc-c
Confidence 22678899999999999999999999877555444433311 11111 111000000000 0
Q ss_pred eEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccc
Q 002196 677 LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKL 756 (954)
Q Consensus 677 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~ 756 (954)
..+ +..|.-... +. +. .+...+ ..-.+|+.
T Consensus 269 ~~q-l~~~cLsf~-----p~----~~------~a~~~~----------------------------------~se~~YE~ 298 (447)
T KOG4497|consen 269 IVQ-LLHHCLSFT-----PT----DL------EAHIWE----------------------------------ESETIYEQ 298 (447)
T ss_pred hhh-hcccccccC-----CC----cc------ccCccc----------------------------------cchhhhhh
Confidence 000 000000000 00 00 000000 00000111
Q ss_pred ccccCCCceeEEecCC--CCCccceEEEEEecCCceEEEeecC--CeEEEeeccCCCCCCCCcccCCCCccccCCCCccc
Q 002196 757 TEITEPSQCRSLRLPD--NLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 832 (954)
Q Consensus 757 ~~~~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~~d--g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~ 832 (954)
.. .+.....++-+. ....-.+.-++||+|..++++-.+. ..+-+||+. .-++
T Consensus 299 ~~--~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq----------------------~l~l 354 (447)
T KOG4497|consen 299 QM--TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ----------------------NLKL 354 (447)
T ss_pred hh--cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech----------------------hhhh
Confidence 00 000001111000 0123456789999999998888775 455556544 3333
Q ss_pred ccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCc
Q 002196 833 MTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS 907 (954)
Q Consensus 833 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg 907 (954)
..... ...+|....|.|....|+.+. ...+++|......++. ..+..-.|..+.|.- +|..++..+.|.
T Consensus 355 ~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 355 HAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred hhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecC-CCcEEEEEcCCc
Confidence 33222 567899999999999888887 5679999986544443 333456799999998 899999888885
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=3.1e-18 Score=182.82 Aligned_cols=281 Identities=18% Similarity=0.296 Sum_probs=214.8
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
+.++|-..|+|+.|...|. .+++|+.|..|+||.+.++.++.. ..||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 4466999999999999998 678999999999999999988775 78999999999999999
Q ss_pred CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE---ecc-C
Q 002196 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI---FEG-H 506 (954)
Q Consensus 431 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~ 506 (954)
.++|+++.|..|++|.+..+..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +.. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998877 78999999999999984 4788999999999872111111 111 1
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
..-+.++.|. .++..++|++.|+.-..|.+..... +...+.-+.++.+-..+.... ..+..+.+|++.+
T Consensus 316 ~~~~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~a---r~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 316 KDLVDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTA---RNDHRLCVWNLYT 384 (1113)
T ss_pred ccceeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceee---eeeeEeeeeeccc
Confidence 2334445444 3446799999999988886542111 111111222222222222221 1255688999999
Q ss_pred CeEEEEEecCCCCCeEEEEEeCCCCEE-EEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCc
Q 002196 587 GAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (954)
Q Consensus 587 ~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 665 (954)
|...+.+.+|.. .+..+.++|-+..+ .+++.||...|||+-.|.+++..... ...+....||+||..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCc
Confidence 999999998877 89999999976554 56789999999999999888877633 456778899999999998888899
Q ss_pred EEEEEccCC
Q 002196 666 IKILANADG 674 (954)
Q Consensus 666 i~iwd~~~~ 674 (954)
++|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999876554
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=1.2e-16 Score=150.27 Aligned_cols=306 Identities=14% Similarity=0.178 Sum_probs=199.0
Q ss_pred cceeeeeeCCCCCcceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcC-------CeEEEEeCCCCceeeee
Q 002196 323 VNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNM-------GDVMLWEVGSRERIAVK 395 (954)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~d-------g~i~iwd~~~~~~~~~~ 395 (954)
++|.-+.|.+.+..+-+- ..+.|.++|+.++-+|-.+++|+++..+ ..+.||.+........
T Consensus 40 NqVhll~~d~e~s~l~sk----------vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~- 108 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSK----------VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN- 108 (370)
T ss_pred ceeEEEEecCccchhhhh----------hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc-
Confidence 355666777766443321 2244779999999999999999998763 2467887765432210
Q ss_pred eeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeee---eeecccCCEEEEEEe
Q 002196 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL---EIEAHVGSVNDLAFS 472 (954)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s 472 (954)
. ........+-..+-+.|.|+.|.|++..+++-. |..|.+|+++.+..+.... .-.+|....++-+|+
T Consensus 109 -~-------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 109 -S-------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred -c-------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence 0 000111122234567999999999999999875 7889999998876522111 111356678899999
Q ss_pred c--CCCceEEEEEcCCCeEEEEECCCCceEEEe-ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEee
Q 002196 473 Y--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYD 548 (954)
Q Consensus 473 ~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~ 548 (954)
| |+. -+....|+++..||+++.++...+ .+|...|..+.|+|+.. .+|++|+.||.|++||.+..+. +..+.
T Consensus 180 pHHdgn---qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 180 PHHDGN---QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred CCCccc---eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccC
Confidence 9 455 344556799999999998877665 46888899999998765 7899999999999999987664 55678
Q ss_pred CCCCceEEEEECCCCCE-EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002196 549 APGHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (954)
.|.+.|.++.|+|.... +++++. +..+.+|....-.....+....+ .. =.++. .+ ...++ -+
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~S----Ds~V~Lsca~svSSE~qi~~~~d--es---e~e~~-----ds-eer~k--pL 318 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGS----DSAVNLSCASSVSSEQQIEFEDD--ES---ESEDE-----DS-EERVK--PL 318 (370)
T ss_pred CCceEEEEEEecCccceEEEecCC----CceeEEEeccccccccccccccc--cc---cCcch-----hh-HHhcc--cc
Confidence 88899999999997654 555554 34477776543221111111110 00 00000 00 00111 11
Q ss_pred CCCceeEEEecCCCCCCcceEEECC-CCCEEEEEeCCCcEEEEEcc
Q 002196 628 DNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 628 ~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~ 672 (954)
. ...+.++..| ...|++++|+. |.-++|+-+.||++.|=.+.
T Consensus 319 ~-dg~l~tydeh--EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 319 Q-DGQLETYDEH--EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred c-cccccccccc--ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1 1233445544 66899999988 56678899999999885543
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=2.1e-15 Score=162.45 Aligned_cols=285 Identities=13% Similarity=0.177 Sum_probs=176.0
Q ss_pred EEEEecCCeEEEEeCCCCCcee--EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC-CCeE--EEEEecCCC
Q 002196 524 IFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAV--KRTYHGLGK 598 (954)
Q Consensus 524 l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~--~~~~~~~~~ 598 (954)
.++...++.|.+||+.+..... ...........++++|++++|++++.. ...|.+|++. ++.. +..... ..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~---~~~i~~~~~~~~g~l~~~~~~~~-~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP---EFRVLSYRIADDGALTFAAESPL-PG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC---CCcEEEEEECCCCceEEeeeecC-CC
Confidence 3444678999999997433211 222233567789999999999887643 3448889886 3433 222221 22
Q ss_pred CCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC-CceeEEEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEccCCC
Q 002196 599 RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGI 675 (954)
Q Consensus 599 ~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~~ 675 (954)
....++++|+++++++++ .++.|.+|++.+ +..........+.....+++++|+++++++++ .++.|.+||+.+..
T Consensus 81 -~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 -SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred -CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 456799999999999887 588999999964 32211111111123467889999998886554 56999999987631
Q ss_pred eeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccc
Q 002196 676 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK 755 (954)
Q Consensus 676 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~ 755 (954)
. +.......
T Consensus 160 ~-l~~~~~~~---------------------------------------------------------------------- 168 (330)
T PRK11028 160 H-LVAQEPAE---------------------------------------------------------------------- 168 (330)
T ss_pred c-ccccCCCc----------------------------------------------------------------------
Confidence 1 10000000
Q ss_pred cccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec-CCeEEEeeccCCCCCCCCcccCCCCccccCCCCccccc
Q 002196 756 LTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (954)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~ 834 (954)
...+ .......++|+|||++++++.. ++.+.+|++.... +. +++...-. ...
T Consensus 169 ------------~~~~---~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~----~~------~~~~~~~~--~~p 221 (330)
T PRK11028 169 ------------VTTV---EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH----GE------IECVQTLD--MMP 221 (330)
T ss_pred ------------eecC---CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC----CC------EEEEEEEe--cCC
Confidence 0000 0123456899999999988876 8999999986310 00 00000000 000
Q ss_pred ccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcccccEEEeeCCC---CCCeeEEEecCCCCceEEEEec-Ccc
Q 002196 835 NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPP---PPAATFLAFHPQDNNIIAIGME-DSS 908 (954)
Q Consensus 835 ~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~sp~d~~~lasgs~-dg~ 908 (954)
.... +......++++|||++++++. ++.|.+|++.......++.++ ......++|+| ||++|+++.. +++
T Consensus 222 ~~~~---~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~~~~~~ 297 (330)
T PRK11028 222 ADFS---DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAGQKSHH 297 (330)
T ss_pred CcCC---CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEEccCCc
Confidence 0001 122344689999999999886 688999998643322222222 12457899999 8888887765 899
Q ss_pred EEEEecc
Q 002196 909 IQIYNVR 915 (954)
Q Consensus 909 i~iwd~~ 915 (954)
|.+|+++
T Consensus 298 v~v~~~~ 304 (330)
T PRK11028 298 ISVYEID 304 (330)
T ss_pred EEEEEEc
Confidence 9999875
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-17 Score=171.14 Aligned_cols=266 Identities=12% Similarity=0.198 Sum_probs=189.2
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
..|.+.|+.++|+|... .|++++.||++.+|+++....-....++ +...+.+|.++|.|+++++++..
T Consensus 291 ~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~e-----------pi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVE-----------PILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred ecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccccee-----------eeEEEecccCceEEEEecCCceE
Confidence 34899999999999998 7899999999999999442211111111 22236789999999999999999
Q ss_pred EEEEEcCCEEEEEEeeCCc-------ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 433 FGVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||+++.|+.....+ .+|..
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCC
Confidence 9999999999999664211 1112236789999999999999888 489999999999999776655 34432
Q ss_pred CCC--CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC-------CCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 506 HES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------GHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 506 ~~~--~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
... .-.++.+..... ...++...-+.--++++........+... ...+..+.+.|.+...+++..++
T Consensus 436 ~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~--- 511 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDR--- 511 (577)
T ss_pred ccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCC---
Confidence 222 223333322111 11222222222223333333333332221 12567788999998888887654
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
.|+++|..++.++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....|
T Consensus 512 -~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 512 -SIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -ceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 499999999999999998877 8999999999999999999999999999877666555443
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.2e-17 Score=152.35 Aligned_cols=300 Identities=14% Similarity=0.173 Sum_probs=197.5
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-CCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
+...+++|.+.|+++.|..+ .+|++|..-|.|++|++.+......+. .+...|+.+..-|++ .+.+-+. +.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgR----d~ 77 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGR----DP 77 (323)
T ss_pred CeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCC----Cc
Confidence 45667799999999998654 479999999999999999988887777 445588888888874 4444443 45
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeC-----CCC----EEEEEECCC-eEEEEECCCCceeEEEec--CCCCCCc
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-----TKN----RFLAAGDEF-MIKFWDMDNVNLLASIDA--DGGLQAS 645 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~~--~~~~~~v 645 (954)
.+.+|++..+..+..-.- .++++.|.+ +++ .++.-++.. .+.+-|......+...+. ....+.+
T Consensus 78 ~L~lw~ia~s~~i~i~Si----~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSI----VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred eEEEEEccCcceEEEeee----eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 699999887654432211 233333332 221 111111100 122222222111211111 1223455
Q ss_pred ceEEECC-CC--CEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccc
Q 002196 646 PCIRFNK-EG--ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAP 722 (954)
Q Consensus 646 ~~v~~s~-~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (954)
.|..+.. ++ -+++.|.++|.+.+||+.++...+ .++..
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~-------------------------------------- 194 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQS-------------------------------------- 194 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceee-ccccc--------------------------------------
Confidence 6665433 23 256778889999999998873222 22110
Q ss_pred cccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEE
Q 002196 723 AAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKL 802 (954)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~l 802 (954)
|.. ..+...|..+|.++.|.+.-.+=++++.+..+..
T Consensus 195 -------------------------------~kv------------~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 195 -------------------------------SKV------------ESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred -------------------------------ccc------------ccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 000 0111237788999999887777788888888888
Q ss_pred eeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeC
Q 002196 803 WKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM 881 (954)
Q Consensus 803 w~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~ 881 (954)
|+++....+ . .-+..+. + .+-.|..+.+-||++.+|+++ |+.|+||+.+++.++..++
T Consensus 232 ~Sl~~s~gs----l-----------q~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 232 YSLNHSTGS----L-----------QIRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred eeeccccCc----c-----------cccceEE--e----cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh
Confidence 887632110 0 0001111 1 345577889999999999999 9999999999999999999
Q ss_pred CCCCCeeEEEecCCCCceEEEEecCccEEEEec
Q 002196 882 PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (954)
Q Consensus 882 ~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~ 914 (954)
-|.+.|.+++|+| |..++|.++.|+.|.+|++
T Consensus 291 yHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999 8899999999999999986
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=4.9e-16 Score=146.54 Aligned_cols=292 Identities=15% Similarity=0.273 Sum_probs=209.3
Q ss_pred cceEEEecCCCCeeEEEEc--CCCCeEEEEEEc----CCeEEEEeC--CCCceeeeeeeEEEeccCCCccccccccCCCC
Q 002196 347 KTVVMTLNQGSAVKSMDFH--PVQQILLVVGTN----MGDVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYT 418 (954)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~s--p~g~~ll~~g~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 418 (954)
.+.+..+...-.++++.|| |+.+..||.|+. .+.|.|-.+ .+++.+.. .-..|.
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~ 96 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHP 96 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCC
Confidence 3456667777789999999 566677888875 244555443 33333321 124699
Q ss_pred CCeEEEEEccCCC-----EEEEEEcCCEEEEEEeeCCc-ceeeeeee-----ecccCCEEEEEEecCCCceEEEEEcCCC
Q 002196 419 ASVNRVMWSPDGT-----LFGVAYSKHIVHLYTYHGGD-ELRNHLEI-----EAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (954)
Q Consensus 419 ~~V~~l~~spdg~-----~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~~~~s~~~~~~~l~s~~~dg 487 (954)
-+++.+.|.|+.. +||+. +..+|+|.+...+ .+.....+ ..+..++++..|..-..+ ++.+++-|-
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDT 173 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDT 173 (364)
T ss_pred CCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccC
Confidence 9999999999863 56654 3469999987421 12111112 245678999999987777 699999999
Q ss_pred eEEEEECCCCc---eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee-EeeCC--CCceEEEEECC
Q 002196 488 VIKVWDAVTGT---KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAP--GHSSTMMAYSA 561 (954)
Q Consensus 488 ~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~--~~~v~~~~~s~ 561 (954)
+..|||++++. ....+-+|...|..++|...+ .+.+++.+.||.+++||++..+... .+... ..+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 99999999873 355677899999999998744 3799999999999999999766433 33332 34778888887
Q ss_pred CC-CEEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCce------
Q 002196 562 DG-ARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL------ 632 (954)
Q Consensus 562 ~g-~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------ 632 (954)
.. +++++...+. ..|.+.|++.. .++..+.+|.. .|+.++|.|.. ..|+++|.|..+.+||+...-.
T Consensus 253 qDpnymATf~~dS---~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 253 QDPNYMATFAMDS---NKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CCchHHhhhhcCC---ceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 54 5666665543 24889999875 57788899887 99999999975 6889999999999999875321
Q ss_pred eEEEecCCCCCCcceEEECC-CCCEEEEEeCCCcEEE
Q 002196 633 LASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKI 668 (954)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~i 668 (954)
+..+. ....|+.+.|++ .+..++.+.. +.+.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22222 245799999997 5678877654 34433
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=8.9e-15 Score=143.25 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=184.5
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC--CCeEEEEEC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDA 494 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~--dg~i~iwd~ 494 (954)
....+..+.|+.|...|..|+.|| -++|+.+...... ........|..+-|+. . +++..+. -+.+++.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--S--LvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--S--LVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--c--eeEEEecCCCceEEEEEc
Confidence 345677888999999999999999 4788776543321 2222334577777774 3 3443333 346999999
Q ss_pred CCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC---CCceEEEEECCCCCEEEEEEe
Q 002196 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---GHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~ 571 (954)
+.+..+..+. ...+|.++.++. +.|+.+-.+. |+|||+++.+....+... ...+..+++++.+.+++.-+.
T Consensus 76 Kk~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 76 KKKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred ccCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 9888887776 567788888764 4566665544 999999998877765443 234556666666678887543
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCceeEEEecCCCCCCcceEEE
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRF 650 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (954)
-. .+.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ |||+.+.+|+.+..+........|.+++|
T Consensus 150 ~t--~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 150 TT--SGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred CC--CceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 32 34599999999999999999887 9999999999999999998885 79999999999999976544567899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCC
Q 002196 651 NKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+|++++|++.+..++|+++.+...
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999988754
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=9.5e-16 Score=156.16 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=145.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
...|.++|.|-.|+|||.-|++++.||.|++|.-... ++. ++.....+|.|++|.|+... ++++.+ +.+.|=-
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~g--~h~~IKp 172 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNS-IVFCQG--GHISIKP 172 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCc-eEEecC--CeEEEee
Confidence 5679999999999999999999999999999986543 221 34456678999999999986 355544 4666666
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.....+-..++|.+-|.++.|++.. +.+++|++|-..++||-. +........|..+|++++|.|+ +.++.++.+
T Consensus 173 L~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n- 247 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN- 247 (737)
T ss_pred cccccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-
Confidence 77777778889999999999999877 699999999999999954 3455566677889999999999 555555421
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEE
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 626 (954)
+++ +.....+.|..++|++||..+++|+..|.+.+-.
T Consensus 248 ----t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 248 ----TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ----eee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 122 3344444889999999999999999988876543
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=6.5e-17 Score=150.37 Aligned_cols=246 Identities=16% Similarity=0.207 Sum_probs=180.6
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+..... .+. .|...|+.+.-.|++. +.+-+.|..+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l 81 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL 81 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence 4678999999999998877 8889999999999999876554 455 5677899999999865 899999999999
Q ss_pred EECCCCceEE--------------Eec---------------------------------------cCCCCeEEEeeecc
Q 002196 492 WDAVTGTKQY--------------IFE---------------------------------------GHESPVYSICPHHK 518 (954)
Q Consensus 492 wd~~~~~~~~--------------~~~---------------------------------------~~~~~v~~~~~~~~ 518 (954)
|++.-+..+. .+. +..+.+.+..+...
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9987633211 000 11122333332111
Q ss_pred -CCccEEEEEecCCeEEEEeCCCCCceeE----------eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-
Q 002196 519 -ENIQFIFSTATDGKIKAWLYDNLGSRVD----------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE- 586 (954)
Q Consensus 519 -~~~~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~- 586 (954)
+..-+++.|.++|.+.+||+.++..... ...+..+|.++.|.+.-..=++++.+. .+..|++..
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d----kl~~~Sl~~s 237 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD----KLVMYSLNHS 237 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc----cceeeeeccc
Confidence 1113567788899999999998744333 334556888888876544444444332 366776543
Q ss_pred -CeE-EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 587 -GAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 587 -~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
+.+ ++....-....+..+.+-||++.++++|-|+.|+||+.++..++..+..| ...|++++|+|+..++|.++.|+
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCc
Confidence 221 12221122226788899999999999999999999999999999999977 57899999999999999999999
Q ss_pred cEEEEEc
Q 002196 665 GIKILAN 671 (954)
Q Consensus 665 ~i~iwd~ 671 (954)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.2e-14 Score=156.73 Aligned_cols=273 Identities=12% Similarity=0.167 Sum_probs=177.5
Q ss_pred EEEEEEcCCeEEEEeCCC-CceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE-cCCEEEEEEee
Q 002196 371 LLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYH 448 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~iwd~~ 448 (954)
+.++...++.|.+||+.+ ++...... + .+.+....++++||+++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 455667789999999964 33221111 1 1335677899999999987764 47889999997
Q ss_pred CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC-Cc---eEEEeccCCCCeEEEeeeccCCccEE
Q 002196 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GT---KQYIFEGHESPVYSICPHHKENIQFI 524 (954)
Q Consensus 449 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~l 524 (954)
....+...... ...+....++|+|+++. ++++...++.|.+|++.+ +. .+..+. +......++++|++ +++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~~-l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g--~~l 140 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGRF-LFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN--RTL 140 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCCE-EEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC--CEE
Confidence 32222211122 13345678999999995 344444589999999864 32 233333 22345667777655 566
Q ss_pred E-EEecCCeEEEEeCCCCCceeE------eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC--C--eEEEEE
Q 002196 525 F-STATDGKIKAWLYDNLGSRVD------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--G--AVKRTY 593 (954)
Q Consensus 525 ~-s~s~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~--~~~~~~ 593 (954)
+ +...++.|.+||+++.+.... ....+.....+.|+|+|++++++.. ....|.+||+.. + +.+..+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEEE
Confidence 4 555679999999986432211 1122445678999999999988764 244699999863 3 334443
Q ss_pred ecCCC-----CCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCc----eeEEEecCCCCCCcceEEECCCCCEEEEEeC-
Q 002196 594 HGLGK-----RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVSTN- 662 (954)
Q Consensus 594 ~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~- 662 (954)
..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEcc
Confidence 32111 1223588999999999986 57899999986533 22222211 24568999999999988775
Q ss_pred CCcEEEEEcc
Q 002196 663 DNGIKILANA 672 (954)
Q Consensus 663 dg~i~iwd~~ 672 (954)
++.|.+|++.
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999875
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=2.2e-15 Score=164.52 Aligned_cols=250 Identities=14% Similarity=0.134 Sum_probs=183.6
Q ss_pred CCCCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeCCcce--eee-eeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 417 YTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL--RNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 417 h~~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
-...|.|+.|+| +..++|.|..+|.|.+||+..+... ... .....|..+++.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 568999999999 6778888999999999999877542 111 123468899999999876442248999999999999
Q ss_pred ECCCCceE------EEec------cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc--------eeEeeCCCC
Q 002196 493 DAVTGTKQ------YIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--------RVDYDAPGH 552 (954)
Q Consensus 493 d~~~~~~~------~~~~------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~ 552 (954)
+++.-... .... .-...++++.|.+... ..++.|+.+|.|..-+-..... ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 87643321 1111 1234578888887665 6899999999987633222111 224556777
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC-CCeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCC
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 630 (954)
.|+++.++|-+..++..+. +.++++|... ...++..+..+.. .+++++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998876666553 4469999987 5666666666655 699999999874 5666668999999998754
Q ss_pred --ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 631 --NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 631 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++.+.... ....+.+.|++.|+.|++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 344444333 456778899999999999999999999998654
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=1.6e-17 Score=177.45 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=217.8
Q ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 590 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
++.+.+|.. .|+|+.|...|.++++|+.|..++||.+.++.++....+| .+.|+.++.+.+..++++++.|..|++|
T Consensus 183 ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh--s~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH--SGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCC--ccccchhccchhhhhhhhcccCceEEEE
Confidence 445567766 8999999999999999999999999999999999999877 6689999999999999999999999999
Q ss_pred EccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccc
Q 002196 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (954)
Q Consensus 670 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~ 749 (954)
.+.++ .++..+.+|...|+++++.+. .+.+.||
T Consensus 260 rl~~~-~pvsvLrghtgavtaiafsP~----------------------------------------------~sss~dg 292 (1113)
T KOG0644|consen 260 RLPDG-APVSVLRGHTGAVTAIAFSPR----------------------------------------------ASSSDDG 292 (1113)
T ss_pred ecCCC-chHHHHhccccceeeeccCcc----------------------------------------------ccCCCCC
Confidence 99999 899999999999888755432 3667789
Q ss_pred cccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCC
Q 002196 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (954)
Q Consensus 750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~ 829 (954)
++++||..-......++.... .....+.++.|-..+..+++++.|+....|.+... .|
T Consensus 293 t~~~wd~r~~~~~y~prp~~~---~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~---- 350 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRPLKF---TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW---- 350 (1113)
T ss_pred ceEeccccccccccCCCCCCc---ccccceeeeeccccccccccccCCcccccchhhHh---------------hh----
Confidence 999999872111111111111 12356677888888999999999998888865421 11
Q ss_pred cccccccCCCCCCCCCccEEEeccCC-CeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCc
Q 002196 830 GILMTNDISDTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS 907 (954)
Q Consensus 830 ~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg 907 (954)
+...+.-+.++.|- .+.+++- +-.+++|++.+|...+.+.+|...+..|.++|-+.+...+++.||
T Consensus 351 ------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 351 ------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred ------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 22222222233232 3445554 778999999999999999999999999999998888888999999
Q ss_pred cEEEEeccccceEEEe-cCCccceeEEEEecCCCeEEEecCCcceecC
Q 002196 908 SIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 908 ~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i~ 954 (954)
.+.|||+-.|..++.. .+| +.+..-+||+||+.++....-|.+.||
T Consensus 419 st~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 419 STIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 9999999998776654 465 456667999999998887777777664
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2e-15 Score=164.80 Aligned_cols=263 Identities=16% Similarity=0.201 Sum_probs=193.4
Q ss_pred cceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
...-..+.....|+|+.|+|....+++.|+.+|+|.+||+..+...... ........|..+|+.+.|
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEE
Confidence 4566777888999999999999999999999999999999987652100 011124569999999999
Q ss_pred ccCCCE--EEEEEcCCEEEEEEeeCCcceeeeeeee---------cccCCEEEEEEecCCCceEEEEEcCCCeEEEEE--
Q 002196 427 SPDGTL--FGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD-- 493 (954)
Q Consensus 427 spdg~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd-- 493 (954)
..+..- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|.-=+
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEecc
Confidence 886544 9999999999999876533211110011 12346899999998877 699999999998733
Q ss_pred -CCCCc-----eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC-CCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 494 -AVTGT-----KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 494 -~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
...+. .+..+..|.++|+++.++|-.. ..+.+++ |.++++|... ...+...+..+...+++++|||..-.+
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence 22222 2335667899999999988775 4455555 9999999887 555666666666779999999988766
Q ss_pred EEEEeCCCCceEEEEEeCCCC--eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 567 FSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+++. ++++.+.+||+... .++.+.... ......+.|++.|+.+++|...|.+.+|++..
T Consensus 457 F~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 457 FATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 6655 23556999998754 344444333 22667788899999999999999999999864
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2e-15 Score=153.82 Aligned_cols=341 Identities=13% Similarity=0.128 Sum_probs=224.7
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEE-EEEEe-----c-CCCceEEEEEcCCCe
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVN-DLAFS-----Y-PNKQLSVVTCGEDRV 488 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s-----~-~~~~~~l~s~~~dg~ 488 (954)
.|...|.|+.|+.+...+.+++.+..+.-|++.+... .. +.-....|. .+-.- . .+.. .++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d-~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSD-TLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcc-eEEEEcCCce
Confidence 4777888999999888777765555555556544321 11 110111111 00000 0 1122 5889999999
Q ss_pred EEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 489 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
+.+.+ +.++......+|.+.+.+-.|++++ .-|+++++||.|++|.-. +-...........|+|++|.|+...++.
T Consensus 87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 87 FVILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred EEEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEE
Confidence 99998 7888888899999999999998877 569999999999999743 2233333444568999999999988877
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceE
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (954)
+..+ .+.+=.+.....+...+.|++ -|.++.|++..+.+++||+|-..+|||... ..+..-..| ..+|+++
T Consensus 163 c~g~-----h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~ITSv 233 (737)
T KOG1524|consen 163 CQGG-----HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAITSV 233 (737)
T ss_pred ecCC-----eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChh--ccceeee
Confidence 7532 366666666667777888887 899999999999999999999999999754 444444444 5589999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccc
Q 002196 649 RFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG 728 (954)
Q Consensus 649 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (954)
+|+|+ ..++.++.. ++|+ +.
T Consensus 234 a~npd-~~~~v~S~n-t~R~---~~------------------------------------------------------- 253 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSYN-TARF---SS------------------------------------------------------- 253 (737)
T ss_pred eeccc-cceeeeeee-eeee---cC-------------------------------------------------------
Confidence 99999 566655532 3321 00
Q ss_pred cCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee-ccC
Q 002196 729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK-WPR 807 (954)
Q Consensus 729 ~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~-~~~ 807 (954)
...+.|..++||+||..++.++..|.+.+=- ++.
T Consensus 254 ---------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq 288 (737)
T KOG1524|consen 254 ---------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ 288 (737)
T ss_pred ---------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehh
Confidence 0245688899999999999999998876522 221
Q ss_pred CCCCCCCc--ccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCCC
Q 002196 808 NERNSTGK--ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPP 885 (954)
Q Consensus 808 ~~~~~~g~--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~ 885 (954)
.-....+. ......+.+-|+.++..-... ....+...+ -.-.+|+++....|++|.-+.......+.+...
T Consensus 289 ~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE-----~p~rv~k~s--L~Y~hLvvaTs~qvyiys~knwntpiiidgre~ 361 (737)
T KOG1524|consen 289 QLVSGNLKATSKSRKSITVRDVATGVQDILE-----FPQRVVKFS--LGYGHLVVATSLQVYIYSEKNWNTPIIIDGRED 361 (737)
T ss_pred hhhhccceeEeeccceEEeehhhhhHHHHhh-----Cccceeeee--eceeEEEEEeccEEEEEecCCccCcEEEecccc
Confidence 11111111 111223455566665543221 234454444 344567777778899998766555555554443
Q ss_pred C
Q 002196 886 A 886 (954)
Q Consensus 886 ~ 886 (954)
.
T Consensus 362 t 362 (737)
T KOG1524|consen 362 T 362 (737)
T ss_pred c
Confidence 3
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.5e-15 Score=147.04 Aligned_cols=255 Identities=11% Similarity=0.109 Sum_probs=180.7
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC---cceeeeeee-ecccCCEEEEEEecCCCceEEEEEcCCC
Q 002196 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG---DELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (954)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~h~~~v~~~~~s~~~~~~~l~s~~~dg 487 (954)
+-+.+|.+.|+++.||.++++|++|+.|..+++|+++.- +..+++... ..|...|.|++|...+. .+++|+.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcc
Confidence 346789999999999999999999999999999998642 111111111 23557899999997776 699999999
Q ss_pred eEEEEECCCCceEEEecc--CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCceEEEEECCC
Q 002196 488 VIKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSAD 562 (954)
Q Consensus 488 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~ 562 (954)
+|...|+.+.+.+..+.. ..+.|+.+..+|.. +.+++.+.++.|.+||.+.... .......+.....+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999998887763 23589999999885 6899999999999999986552 2333344557889999998
Q ss_pred CCEEEEEEeCCCCceEEEEEeCCCCe-EEEEEe---cCCC--CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE
Q 002196 563 GARLFSCGTNKEGESYLVEWNESEGA-VKRTYH---GLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~---~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 636 (954)
.-.|+.......| +-+||.+... .+.... +... ....++.|+|.|+.+++--....-.+||+-+..+...-
T Consensus 206 ~P~Li~~~~~~~G---~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 206 TPALILVNSETGG---PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CceeEEeccccCC---CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 7665554433332 7889987643 222211 1111 12356789999999888765555567787664433222
Q ss_pred ecCC-----CCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 637 DADG-----GLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 637 ~~~~-----~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
..|. ....+.+++|.-|- .+++|+++=.|++|.+...
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 1111 12345677776554 4899999999999987543
No 198
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=8.2e-16 Score=144.83 Aligned_cols=237 Identities=21% Similarity=0.377 Sum_probs=171.6
Q ss_pred CCcccccccc-----cceeeeeeCCCCC-----cceeecCCCC-------CcceEEEec--CCCCeeEEEEcCCCCeEEE
Q 002196 313 GISDEVNNLS-----VNILPVAYTPQSL-----GQSSYSTDDL-------PKTVVMTLN--QGSAVKSMDFHPVQQILLV 373 (954)
Q Consensus 313 ~~~d~v~~~~-----~~i~~~~~s~~g~-----~~~~~~~~~~-------~~~~~~~~~--h~~~V~~~~~sp~g~~ll~ 373 (954)
-|..|||... .+|++-.|+..+. ..|.|...+- +-+++..+. +-+.|.|+.|.|++..+++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 6677888763 3455556653221 2444443322 234555555 5679999999999986544
Q ss_pred EEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCCEEEEEEcCCEEEEEEeeCCc
Q 002196 374 VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGD 451 (954)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~~~dg~i~iwd~~~~~ 451 (954)
. .|..|.+|++..+..+.. . .....-.+|....++-+||| ||+.+++. .|+++..||+++..
T Consensus 141 m--~dn~i~l~~l~ess~~va-e------------v~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 141 M--DDNNIVLWSLDESSKIVA-E------------VLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMK 204 (370)
T ss_pred e--ccCceEEEEcccCcchhe-e------------ecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchh
Confidence 3 388999999998876321 1 11111234677888999999 88888876 78899999999876
Q ss_pred ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC-CceEEEeccCCCCeEEEeeeccCCccEEEEEecC
Q 002196 452 ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATD 530 (954)
Q Consensus 452 ~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d 530 (954)
+...+ -.+|...|..+.|+|+-+. +|++|+.||.|++||.+. ..++..+.+|...|+++.|++..+ +++++++.|
T Consensus 205 ~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-qLiLs~~SD 280 (370)
T KOG1007|consen 205 KNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-QLILSGGSD 280 (370)
T ss_pred hhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-eEEEecCCC
Confidence 65432 3578889999999999877 799999999999999975 457889999999999999999887 899999999
Q ss_pred CeEEEEeCCCCC-----------------------------ceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 531 GKIKAWLYDNLG-----------------------------SRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 531 g~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
..|.+|....-. ....+..|...|++++||.-.-++++.
T Consensus 281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 999999543211 111344556678888888766665543
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.6e-16 Score=157.72 Aligned_cols=165 Identities=12% Similarity=0.189 Sum_probs=132.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCC
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 431 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 431 (954)
+|.+.|+|++|+.+|. +|++|+.|-.+.|||.-..+.+.. +-++|...|.|+.|-| +.+
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCe
Confidence 4999999999999999 899999999999999987766553 2478999999999999 577
Q ss_pred EEEEEEcCCEEEEEEeeCCc-------ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-e----
Q 002196 432 LFGVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K---- 499 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~---- 499 (954)
.+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.+++.||+|+-+|++... +
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence 89999999999999997521 12222356779999999999999976 69999999999999998632 1
Q ss_pred --E---EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC
Q 002196 500 --Q---YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539 (954)
Q Consensus 500 --~---~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 539 (954)
. ..+...--...++.++|..+ .+|+.|+.|-..++||.+
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhh
Confidence 1 11112223457788888766 799999999999999943
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.5e-15 Score=166.76 Aligned_cols=236 Identities=13% Similarity=0.090 Sum_probs=162.8
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC---CEEEEEEeeCCccee
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELR 454 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~ 454 (954)
+..|.+||........ +..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654321 45678889999999999999988754 369999998875322
Q ss_pred eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE--EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEE-ecCC
Q 002196 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV--WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST-ATDG 531 (954)
Q Consensus 455 ~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-s~dg 531 (954)
...+.+| ...++|+|||+. ++++.+.+|.+.| ||+.++.. ..+..+...+....|+|++ +.++.+ ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~-La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR-LAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDG--QSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCCE-EEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCC--CEEEEEECCCC
Confidence 1223333 446899999995 2334456776555 57666654 4556677777888888765 555544 4678
Q ss_pred eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC
Q 002196 532 KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (954)
Q Consensus 532 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 611 (954)
...+|+++..........+.. ....|+|||+.++..+.+ .+.+||+.++......... ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 888888765333222222222 457899999999887642 2777999988765333222 234578999999
Q ss_pred EEEEEECCCeEEEEEC--CCCceeEEEecCCCCCCcceEEECCC
Q 002196 612 RFLAAGDEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
+|+.++.++.+.+|++ .+|..+..+..+ ...+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCCCcccCCC
Confidence 9999998888888875 357777777654 456788999984
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=4.3e-15 Score=142.47 Aligned_cols=227 Identities=15% Similarity=0.127 Sum_probs=173.1
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
..+|+|.+|++|+. .+|++.....|.||.......-. ....+..|...|+++.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 46899999999999 78888899999999988765221 22347889999999999999999999
Q ss_pred EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce----EEEeccCCCCeE
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK----QYIFEGHESPVY 511 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~ 511 (954)
++.|..-+||....+...++...+..|...++++.|+|.++ .|++|+.-..|.||-.+..+- .+.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999966666666667888999999999999999 599999999999997665432 123345678899
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeC-----CCCC-------------ceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLY-----DNLG-------------SRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~-----~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
++.|++++ -++++|+.|+..+++.. +... ....+...++.+..+.|+|+|..|+-.+.|.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds 228 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS 228 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence 99999876 78999999999999853 1111 0112334566899999999999999998754
Q ss_pred CCceEEEEEeCCCCe-EEEEEecCCCCCeEEEEEeC
Q 002196 574 EGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~ 608 (954)
.+.+-|..... .+........ +..++.|-.
T Consensus 229 ----~v~~~da~~p~~~v~~~~~~~l-P~ls~~~is 259 (361)
T KOG1523|consen 229 ----TVSFVDAAGPSERVQSVATAQL-PLLSVSWIS 259 (361)
T ss_pred ----ceEEeecCCCchhccchhhccC-CceeeEeec
Confidence 37787876654 2333322222 555665543
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=9e-15 Score=163.57 Aligned_cols=255 Identities=13% Similarity=0.078 Sum_probs=182.3
Q ss_pred cCCCCCCeEEEEEccCC-CEEEEEEcCCEEEEEEeeCC----cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe
Q 002196 414 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg-~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~ 488 (954)
+..|...|..++.+++. .++++||.||+|++|+...- ...+...++......+.++.+.+.+. .++.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66799999999998855 99999999999999998642 22333334544567899999999998 5899999999
Q ss_pred EEEEECCCC--c-----eEEEeccC-CCCeEEE-eeeccCCccEEEEEecCCeEEEEeCCCCCceeE--eeCCCCceEEE
Q 002196 489 IKVWDAVTG--T-----KQYIFEGH-ESPVYSI-CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMM 557 (954)
Q Consensus 489 i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~ 557 (954)
|.+.++... + +.+....+ .+.+.++ ++........++.+..-+.|..||+++...... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 12222222 2334443 343333223788888899999999987665443 34455689999
Q ss_pred EECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC---CEEEEEE--CCCeEEEEECCCCce
Q 002196 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAG--DEFMIKFWDMDNVNL 632 (954)
Q Consensus 558 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 632 (954)
+.+|.+.+++.|+.. +.+.+||++-+.++.........++..++.+|-. ...++++ ..+.|.+|++.+|.+
T Consensus 1202 ~idp~~~WlviGts~----G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSR----GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecCC----ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999998753 4599999999988887766555578888777643 3555544 578999999999877
Q ss_pred eEEEecCCC-----------------CCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 633 LASIDADGG-----------------LQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 633 ~~~~~~~~~-----------------~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
...+..... ........+...+.++.+|+.|+.|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 766643210 011122333445568899999999999998775
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=5.2e-15 Score=139.72 Aligned_cols=251 Identities=15% Similarity=0.245 Sum_probs=179.1
Q ss_pred ecCCCCeeEEEEcCCCC----eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 353 LNQGSAVKSMDFHPVQQ----ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~----~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
+.|.-+++.+.|.|+.. .+||+. +..+++|.+...+..... ...+....-..+..++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccccc
Confidence 57899999999999862 367765 347999998853221110 00011111345778999999998
Q ss_pred -CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe---c
Q 002196 429 -DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---E 504 (954)
Q Consensus 429 -dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~ 504 (954)
|-++|.+.+-|-+..|||++++........+.+|...|..++|...+.+ +|++.|.||+|++||++..+--..+ .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7889999999999999999998543333468899999999999998877 7999999999999999876533322 2
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecC-CeEEEEeCCCCCc-eeEeeCCCCceEEEEECCCCC-EEEEEEeCCCCceEEEE
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATD-GKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVE 581 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~i 581 (954)
....+...++|+.... +++++-..| ..|.+.|++.... ...+..|...|+.++|.|... .|.++|. +..+.+
T Consensus 240 ~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 2245677888887554 677776665 4589999997654 456788999999999999754 5666654 556999
Q ss_pred EeCCCCe------EEEEEecCCCCCeEEEEEeCC-CCEEEEEECCCeEEE
Q 002196 582 WNESEGA------VKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKF 624 (954)
Q Consensus 582 wd~~~~~------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i 624 (954)
||+.+.- ++..+.. +..|..+.|++. +.+++.+.. .++.+
T Consensus 315 WDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEec-CeeeE
Confidence 9987532 2233332 237899999964 456665543 34433
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.2e-15 Score=162.24 Aligned_cols=235 Identities=10% Similarity=0.065 Sum_probs=163.1
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
+..|++||..... .+.+..+.. .+....|+|||+.|+.++.+ ..|++||+.+++........ .....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeECC
Confidence 3569999986554 445555544 78899999999999987643 47999999887643332222 2345789999
Q ss_pred CCCEEEEEe-CCCcEEEEE--ccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccccccc
Q 002196 653 EGILLAVST-NDNGIKILA--NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (954)
Q Consensus 653 ~~~~l~s~~-~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (954)
||+.|+.++ .+|.+.||. +.++ . ...+.
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~-~-~~~lt----------------------------------------------- 288 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGG-T-PSQLT----------------------------------------------- 288 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCC-C-eEeec-----------------------------------------------
Confidence 999888765 577766664 3333 1 11110
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCC
Q 002196 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRN 808 (954)
Q Consensus 730 ~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~ 808 (954)
.+...+....|+|||+.|+.++ .+|..+||+++.
T Consensus 289 --------------------------------------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~- 323 (429)
T PRK01742 289 --------------------------------------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA- 323 (429)
T ss_pred --------------------------------------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-
Confidence 0223356688999999887665 468889987642
Q ss_pred CCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCCCCee
Q 002196 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAAT 888 (954)
Q Consensus 809 ~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~ 888 (954)
.++.... +. +.. .+.+|||||++|+..+...+.+||+.+++.......+ ...
T Consensus 324 -------------------~~~~~~~--l~---~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~ 375 (429)
T PRK01742 324 -------------------SGGGASL--VG---GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDE 375 (429)
T ss_pred -------------------CCCCeEE--ec---CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCC
Confidence 1111111 11 222 3578999999999888555667999888765433322 345
Q ss_pred EEEecCCCCceEEEEecCccEEEEecc--ccceEEEecCCccceeEEEEecC
Q 002196 889 FLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKTKLKGHQKRITGLAFSNT 938 (954)
Q Consensus 889 ~l~~sp~d~~~lasgs~dg~i~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d 938 (954)
.+.|+| ||++|++++.++.+.+|++. +|+.+.++.+|.+.+..++|||-
T Consensus 376 ~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 788999 99999999999999988864 58889999999999999999984
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6.3e-15 Score=147.22 Aligned_cols=154 Identities=18% Similarity=0.315 Sum_probs=114.3
Q ss_pred CccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccC
Q 002196 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (954)
Q Consensus 775 ~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 854 (954)
|...|.++.|||||+.|++.+.| ..+||+...+ ..+.. ............+.|+.|
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g----------------------~~~a~-~t~~~k~~~~~~cRF~~d 240 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG----------------------AALAR-KTPFSKDEMFSSCRFSVD 240 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEeccC----------------------chhhh-cCCcccchhhhhceeccc
Confidence 67889999999999999999999 8899976643 11111 000113455667788887
Q ss_pred C---CeEEEe--c-CCeEEEEEcccccE-----EEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEe
Q 002196 855 D---SYVMSA--S-GGKISLFNMMTFKT-----MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923 (954)
Q Consensus 855 g---~~la~~--s-dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~ 923 (954)
+ .+.+.+ . .+.|+.||+..+.- .++...-...|++++.|+ ||+++|.|+.||.|-|++..+-++++-.
T Consensus 241 ~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 241 NAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred CCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 7 333333 3 46677777654322 111112234799999999 9999999999999999999998888765
Q ss_pred c-CCccceeEEEEecCCCeEEEecCCcceec
Q 002196 924 K-GHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 924 ~-~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
+ .|..-|+.|.|+||.+++++.+.|..++|
T Consensus 320 k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 320 KEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred hhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 4 89999999999999999999999987664
No 206
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.1e-14 Score=152.81 Aligned_cols=554 Identities=13% Similarity=0.145 Sum_probs=305.6
Q ss_pred eeeCCCCCcceeec------CCCCCcceEEEec-CCCCeeEEEEcCC-----------CCeEEEEEEcCCeEEEEeCCCC
Q 002196 328 VAYTPQSLGQSSYS------TDDLPKTVVMTLN-QGSAVKSMDFHPV-----------QQILLVVGTNMGDVMLWEVGSR 389 (954)
Q Consensus 328 ~~~s~~g~~~~~~~------~~~~~~~~~~~~~-h~~~V~~~~~sp~-----------g~~ll~~g~~dg~i~iwd~~~~ 389 (954)
+.|++.|- +|.++ .|...-+.+..++ |...|+.+.|.|- ...+||++...|.|.+||...+
T Consensus 21 ~Dw~~~GL-iAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 21 ADWSPSGL-IAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred cccCccce-EEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 34666663 33332 2334556677777 8899999999873 3457888999999999999888
Q ss_pred ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc---CC-CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCC
Q 002196 390 ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP---DG-TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 465 (954)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 465 (954)
..+.. +..|..+|..++|-+ +. ..|++-....++.+|+..+|+.+. ....-...
T Consensus 100 s~~~~-------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~i 157 (1062)
T KOG1912|consen 100 SVINW-------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEI 157 (1062)
T ss_pred hhhhh-------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcc
Confidence 76543 667889999999987 34 466777778899999999998765 33444456
Q ss_pred EEEEEEecCCCceEEEEEcCCCeEEEEECCC-------CceEEEeccCCC----------------C-------eEE--E
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-------GTKQYIFEGHES----------------P-------VYS--I 513 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~----------------~-------v~~--~ 513 (954)
..|+.+.|-+.+ .+..-+..|.+.+-+.-. |+..+.-..|.+ . ..+ +
T Consensus 158 Ls~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 158 LSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred eeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 677888886655 344445556666655321 222222222222 0 011 2
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCC--EEEEEEeCCCCceEEEEEeCCC-----
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNESE----- 586 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~----- 586 (954)
+|+|.- +-++.......+.++|++-..+........+.+.-+.+-|+++ .|++...+| .+.+|--+.
T Consensus 237 af~p~~--rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG----~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 237 AFSPHW--RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG----RLTIRVRKEEPTEF 310 (1062)
T ss_pred hcChhh--hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCC----eEEEEEeeccCccc
Confidence 344444 3344455677899999998888777777777677777777764 566666544 366665433
Q ss_pred -----------CeEEEEEecCCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCceeE--------------------
Q 002196 587 -----------GAVKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVNLLA-------------------- 634 (954)
Q Consensus 587 -----------~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-------------------- 634 (954)
+.....+.......+......|. ...++.--.+|.+.+|.+.+|+.-.
T Consensus 311 ~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~ 390 (1062)
T KOG1912|consen 311 KKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTK 390 (1062)
T ss_pred cccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCcee
Confidence 12222221111112222233343 2233333356777888877543110
Q ss_pred --------EEec-CCCCCCcceEEECC-----------CC-------CEEEEEeCCCcEEEEEccCCCeeEEEecccccc
Q 002196 635 --------SIDA-DGGLQASPCIRFNK-----------EG-------ILLAVSTNDNGIKILANADGIRLLRTVESRTFD 687 (954)
Q Consensus 635 --------~~~~-~~~~~~v~~v~~s~-----------~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 687 (954)
.+.. .+|.....+....| .| .++|.|+..|+|.++|+.++ ...+.+..|+..
T Consensus 391 ~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~ 469 (1062)
T KOG1912|consen 391 LVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSL 469 (1062)
T ss_pred ehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccc
Confidence 0000 01222233332222 11 46889999999999999998 777777777776
Q ss_pred ceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeE
Q 002196 688 ASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRS 767 (954)
Q Consensus 688 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~ 767 (954)
|..+..... ...+.|+-. ...-.+++-.+.+.+-++.++- .+.
T Consensus 470 VkgleW~g~---------------------------sslvSfsys------~~n~~sg~vrN~l~vtdLrtGl----sk~ 512 (1062)
T KOG1912|consen 470 VKGLEWLGN---------------------------SSLVSFSYS------HVNSASGGVRNDLVVTDLRTGL----SKR 512 (1062)
T ss_pred eeeeeeccc---------------------------eeEEEeeec------cccccccceeeeEEEEEccccc----ccc
Confidence 665433221 011111000 0001123333455555555321 122
Q ss_pred EecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCC-CCCcccCCCCccccC--------------------
Q 002196 768 LRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN-STGKATTNQAPQLWQ-------------------- 826 (954)
Q Consensus 768 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~-~~g~~~~~~~i~l~~-------------------- 826 (954)
++........+|+.+..|.-|++++..-.+.-+.+||+.+...- .........++--|.
T Consensus 513 fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~ 592 (1062)
T KOG1912|consen 513 FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSE 592 (1062)
T ss_pred cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhh
Confidence 22122335788999999999999999999999999998543100 000000000000111
Q ss_pred ------CCCcccccccCCC----CC--CCC-------CccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeC--CCC
Q 002196 827 ------PPSGILMTNDISD----TN--PED-------AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFM--PPP 884 (954)
Q Consensus 827 ------~~~~~~~~~~~~~----~~--~~~-------~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~--~h~ 884 (954)
......+...+.+ .+ ... .+..+|| .+..++.|. +|.+.+||+...+...... .|.
T Consensus 593 n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~r 670 (1062)
T KOG1912|consen 593 NLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPR 670 (1062)
T ss_pred ceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCch
Confidence 0000000000000 00 000 1112333 466899999 9999999986543333322 233
Q ss_pred CCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
.......+.|+|+..++ --.| -+-+||.+....+..+.|-......+...-+++.=..-..|+++|+
T Consensus 671 a~~l~~~~ipG~~~~lv-l~~d-~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~d~~~Rf 737 (1062)
T KOG1912|consen 671 AHSLTFPQIPGDHTTLV-LELD-WLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPNDNKERF 737 (1062)
T ss_pred hhheecccCCCCceEEE-EecC-cceecccccceeeeeeccCCcceEEEEEEecccCceecCCCCceeE
Confidence 33555566775565554 3334 4899999988888888665554444444333432222233335553
No 207
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.1e-16 Score=171.95 Aligned_cols=299 Identities=17% Similarity=0.199 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccceeeccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 002196 170 RLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTS 249 (954)
Q Consensus 170 rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (954)
-|.+|+.|+++.||.+|++|.++++.+|||..|.|++|+-.+. +
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~-------------------------------a----- 1057 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLE-------------------------------A----- 1057 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhh-------------------------------c-----
Confidence 5999999999999999999999999999999999999331111 1
Q ss_pred ccccccCCCCCCCCCCCCCCcccccCCchhhccCCCCCCCCCCCccccCCCChhhhhhcCCCCCCcccccccccceeeee
Q 002196 250 LAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVA 329 (954)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~i~~~~ 329 (954)
+.|-+.++.+.+..+ .-+.|..+..|.+.++++||++
T Consensus 1058 -------------------------p~N~t~Rl~~rel~~-~y~gV~g~~~dr~~IFSRFr~w----------------- 1094 (1516)
T KOG1832|consen 1058 -------------------------PLNMTGRLGTRELQS-FYSGVHGNRRDRQFIFSRFRSW----------------- 1094 (1516)
T ss_pred -------------------------chhhhhcccchhhcC-cccccccCcccchhhHhhcccc-----------------
Confidence 111112222222222 1356777778888899988855
Q ss_pred eCCCCCcceeecCCCCCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCcc
Q 002196 330 YTPQSLGQSSYSTDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMP 408 (954)
Q Consensus 330 ~s~~g~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 408 (954)
+++. |....+|++|+-+.+ .|++|+..|.|+++++.+|.....
T Consensus 1095 ---------------------~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------- 1138 (1516)
T KOG1832|consen 1095 ---------------------RSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------- 1138 (1516)
T ss_pred ---------------------hhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc--------------
Confidence 2333 667889999999988 789999999999999999987654
Q ss_pred ccccccCCCCCCeEEEEEccCCCEEEEEEcCC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC
Q 002196 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (954)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d 486 (954)
...|.++|+.+.-|.||..+++.+.-. ...+|++.+- ......+. .-.++.|+..... -+.|...
T Consensus 1139 -----~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~ 1205 (1516)
T KOG1832|consen 1139 -----VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEA 1205 (1516)
T ss_pred -----ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccc
Confidence 567999999999999999887765443 4789998752 11111232 3567889876553 3445555
Q ss_pred CeEEEEECCCCceEEEe-cc---CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCC
Q 002196 487 RVIKVWDAVTGTKQYIF-EG---HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562 (954)
Q Consensus 487 g~i~iwd~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 562 (954)
..+.+||+.++..+.++ .+ ....-++..|+|.. .+++ .||. +||++....+..+..-. ..-.-.|+|.
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndGv--LWDvR~~~aIh~FD~ft-~~~~G~FHP~ 1277 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDGV--LWDVRIPEAIHRFDQFT-DYGGGGFHPS 1277 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCc--ceEe---eCce--eeeeccHHHHhhhhhhe-ecccccccCC
Confidence 68899999999877663 22 12222556677765 4444 3454 79999876665554332 1123358999
Q ss_pred CCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEE
Q 002196 563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 616 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 616 (954)
|..++..+ -+||+++.+.++....-.+ ..+.|...|+.++..
T Consensus 1278 g~eVIINS---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1278 GNEVIINS---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred CceEEeec---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 99988864 4799999988877766543 557788888766543
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2e-14 Score=158.13 Aligned_cols=291 Identities=13% Similarity=0.193 Sum_probs=204.4
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCCEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGV 435 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s 435 (954)
.-..+.|+|-.. .++++...-.|+|||.+.++..... +.. ......|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F-----~n~-----------~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGF-----DNG-----------AFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccc-----cCC-----------CCCCCccceeeeecccchhheee
Confidence 466788888887 5677766678999999999876431 110 12346788888876 5678999
Q ss_pred EEcCCEEEEEEee-CC-cceeee---eeeecc----cCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc-
Q 002196 436 AYSKHIVHLYTYH-GG-DELRNH---LEIEAH----VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG- 505 (954)
Q Consensus 436 ~~~dg~i~iwd~~-~~-~~~~~~---~~~~~h----~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 505 (954)
|+.||.|+||+-- .+ +..+.. ..+.++ .+.=.-+.|..... .|+++|.-..|+|||.....+...+..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 9999999999642 22 111111 112221 11113456776655 477777789999999998888776653
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCc--eEEEEECCCCCE-EEEEEeCCCCceEE
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHS--STMMAYSADGAR-LFSCGTNKEGESYL 579 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~--v~~~~~s~~g~~-l~~~~~~~~~~~~i 579 (954)
....|+++.-.... |+.++.|..||.|++||.+.... +.....|... |..+.+.+.|-. |++++.+|+ |
T Consensus 1207 s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~----I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD----I 1281 (1387)
T ss_pred CCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe----E
Confidence 44557777654433 58999999999999999987554 3344555554 889999887755 888887665 9
Q ss_pred EEEeCCCCeEEE--EEecCC--CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC-----CCCCCcceEEE
Q 002196 580 VEWNESEGAVKR--TYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRF 650 (954)
Q Consensus 580 ~iwd~~~~~~~~--~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~ 650 (954)
.+||++...... ....|. +...+++..+++...+++|+. +.|+||++.. +.+..+... ...+.+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999999752222 222222 224888999999999999988 9999999854 433333221 12456799999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCC
Q 002196 651 NKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+|..-++|+|+.|..|.||.....
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=7.9e-13 Score=141.30 Aligned_cols=334 Identities=13% Similarity=0.154 Sum_probs=198.3
Q ss_pred ceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEE
Q 002196 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (954)
Q Consensus 477 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 556 (954)
.+++++-..++.|.+.|..+.+.+..+......-..+.+++++ +++++++.||.|.++|+.+.+....... +.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 3456778889999999999999999998654443345565544 7899999999999999999887766654 446788
Q ss_pred EEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC------CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC
Q 002196 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN 629 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 629 (954)
+++|+||++++++... ...+.++|.++.+.++.+.... ...+..+..+|....++..- +.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999988653 3359999999999998876532 22466777788888665555 558898889877
Q ss_pred CceeEEEecCCCCCCcceEEECCCCCEEEEE-eCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCC
Q 002196 630 VNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 708 (954)
.+.+..-.... ........|+|++++++.+ ..+..|-++|..++ .....+...... ..
T Consensus 160 ~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p-~~------------------ 218 (369)
T PF02239_consen 160 PKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKP-HP------------------ 218 (369)
T ss_dssp SSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSB-EE------------------
T ss_pred ccccceeeecc-cccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccc-cc------------------
Confidence 65443222111 2245789999999987664 45678999998887 444433211000 00
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCC
Q 002196 709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG 788 (954)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 788 (954)
.+... +.-+ ..+.+. +.+..+
T Consensus 219 ------------------------------------------~~~~~------------~php---~~g~vw--~~~~~~ 239 (369)
T PF02239_consen 219 ------------------------------------------GPGAN------------FPHP---GFGPVW--ATSGLG 239 (369)
T ss_dssp ------------------------------------------TTEEE------------EEET---TTEEEE--EEEBSS
T ss_pred ------------------------------------------ccccc------------ccCC---CcceEE--eecccc
Confidence 00000 0000 000110 111122
Q ss_pred ceEE-EeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEe---c--
Q 002196 789 LAIL-ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA---S-- 862 (954)
Q Consensus 789 ~~l~-~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---s-- 862 (954)
...+ ..+.+ .+.+|+..+.+.+.. ++. .... .-+..+|+++++.+. +
T Consensus 240 ~~~~~~ig~~-----------------------~v~v~d~~~wkvv~~-I~~--~G~g-lFi~thP~s~~vwvd~~~~~~ 292 (369)
T PF02239_consen 240 YFAIPLIGTD-----------------------PVSVHDDYAWKVVKT-IPT--QGGG-LFIKTHPDSRYVWVDTFLNPD 292 (369)
T ss_dssp SSEEEEEE-------------------------TTT-STTTBTSEEEE-EE---SSSS---EE--TT-SEEEEE-TT-SS
T ss_pred ceecccccCC-----------------------ccccchhhcCeEEEE-EEC--CCCc-ceeecCCCCccEEeeccCCCC
Confidence 2221 11111 223345445444332 221 2233 667889999999988 3
Q ss_pred CCeEEEEEcccccEEEeeCCC-CCCeeEEEecCCCCceEEEEecC--ccEEEEeccccceEEEec
Q 002196 863 GGKISLFNMMTFKTMTTFMPP-PPAATFLAFHPQDNNIIAIGMED--SSIQIYNVRVDEVKTKLK 924 (954)
Q Consensus 863 dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~d~~~lasgs~d--g~i~iwd~~~~~~~~~~~ 924 (954)
.++|.++|.++.+.+.++... ...+..+.|++ ||+.+.....+ +.|.|||..|.+.+.++.
T Consensus 293 ~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 293 ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 378999999999888887532 23599999999 77755444333 379999999999998887
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.8e-14 Score=158.46 Aligned_cols=255 Identities=11% Similarity=0.123 Sum_probs=174.7
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~ 494 (954)
.+...+-..+.|+|-...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 44445677889999999999998888999999999887663322222345799999987655547999999999999963
Q ss_pred C-CC----ceEEEeccCCCC-----eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC-CceEEEEECC-C
Q 002196 495 V-TG----TKQYIFEGHESP-----VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA-D 562 (954)
Q Consensus 495 ~-~~----~~~~~~~~~~~~-----v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~-~ 562 (954)
- ++ +.+..+.+-.+. =..+.+.+.....+|++++.-..|+|||.............. ..++++.-+- .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 2 22 233322211110 011222333322467777778999999998766655544332 3566665443 4
Q ss_pred CCEEEEEEeCCCCceEEEEEeCCCCe---EEEEEecCCC-CCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCceeEEE-
Q 002196 563 GARLFSCGTNKEGESYLVEWNESEGA---VKRTYHGLGK-RSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLLASI- 636 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~- 636 (954)
|+.+++|..||. +++||.+... .+...+.|.. .+|..+.+.+.|- .+++|+.||.|++||++.......+
T Consensus 1221 gn~i~AGfaDGs----vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1221 GNIIAAGFADGS----VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred CceEEEeecCCc----eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 688888877554 9999988653 4566666655 1388888888764 5999999999999999874332222
Q ss_pred -ecCCCCC-CcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 637 -DADGGLQ-ASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 637 -~~~~~~~-~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
..+...+ ..+++..+++..++|+|+. +.|.||++...
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 2222123 4899999999999999998 89999998643
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=3e-14 Score=136.74 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=176.4
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
-..+|+|.+|++|+..+|.+.....|.||.....+......++..|...|+.++|+|..++ |++|+.|..-++|....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr--Ivtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR--IVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc--eeEccCCCCccccccCC
Confidence 4479999999999999999999999999999888766677789999999999999999984 99999999999999833
Q ss_pred -C--ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee----EeeCCCCceEEEEECCCCCEEEEE
Q 002196 497 -G--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 497 -~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
+ ++...+..+....+++.|+|.. +.+++|+.-..|.+|-++....-. ........|.++.|+|++-+|++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3 3455666788999999999887 589999999999999877654331 223345589999999999999998
Q ss_pred EeCCCCceEEEEEeC-----CC-------------CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 570 GTNKEGESYLVEWNE-----SE-------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
+.|+. .++|.. ++ |+++..+.. ..+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 165 s~D~k----~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~-~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGK----CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS-SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcc----eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc-CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 87654 555432 11 233444432 23489999999999999999999999999987654
Q ss_pred -eeEEEecCCCCCCcceEEECCCCCEE
Q 002196 632 -LLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 632 -~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
.+...... .-+..++.|-.+...+
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVV 264 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCcee
Confidence 23333222 2355666665544333
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.4e-14 Score=143.14 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=149.3
Q ss_pred EEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE
Q 002196 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 422 ~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
.+++|+++|..|++|+.||++|||++.+...+. ....|.+.|.++.|+|||+ +|++-+.| ..+||++++|.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhh
Confidence 899999999999999999999999987765544 5678999999999999999 79999999 99999999997776
Q ss_pred EeccC--CCCeEEEeeeccCCcc--EEEEE-ecCCeEEEEeCCCCCc-----eeEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 502 IFEGH--ESPVYSICPHHKENIQ--FIFST-ATDGKIKAWLYDNLGS-----RVDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 502 ~~~~~--~~~v~~~~~~~~~~~~--~l~s~-s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
..... ......+.|..++.+. ++++. ..-+.|+.||+..... ..........+++++.+++|++++.++.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 65522 2234455565544222 23322 2345566655543222 1222223348999999999999999998
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
+++ |.+++..+-+.++..+..+...|+.+.|+|+.+++++.+.+....+..+.
T Consensus 302 dGs----Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 DGS----VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCc----EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 766 99999998888877766566599999999999999998888877776654
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=127.06 Aligned_cols=235 Identities=11% Similarity=0.140 Sum_probs=174.1
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC---c----ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG---D----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~---~----~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
..|..-+|+|.+++|++|..+|.|.+..+.+- . -........+|.++|..++|. .. +|++|+. |.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~--~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DD--FLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hh--heeeccC-ceEEE
Confidence 45667789999999999999999999988541 1 011223457999999999998 22 4666654 99999
Q ss_pred EECCCCce------EEE--eccC-----CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 492 WDAVTGTK------QYI--FEGH-----ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 492 wd~~~~~~------~~~--~~~~-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
|.++.... +.. ..-| -..|+++...|..+ -+++++.|+.++.||+++++....+.+|...+.++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 98764321 111 1112 24578888888774 466667999999999999999999999999999998
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC---------CCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG---------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
--.....+++++.|+ ++++||.++++.+..+.... +..|.+++ -+..++++|+. ..+.+|+++.
T Consensus 164 ~R~~~~qilsG~EDG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrs 236 (325)
T KOG0649|consen 164 GRNANGQILSGAEDG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRS 236 (325)
T ss_pred ecccCcceeecCCCc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccC
Confidence 855566788887755 49999999999888775432 22344444 45668887764 4799999999
Q ss_pred CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
.++...++... .+..+.|.. ..+++++..+.|.-|.+.
T Consensus 237 se~t~vfpipa---~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 237 SESTCVFPIPA---RVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCceEEEeccc---ceeEeeeec--ceEEEeccccceeeeeec
Confidence 99999887653 467788854 467778888889888764
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=6.7e-14 Score=156.74 Aligned_cols=208 Identities=15% Similarity=0.161 Sum_probs=145.7
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-------ceEEEeccCCCCeEEEeeeccCCccEEEEEecC
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATD 530 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d 530 (954)
.+..|...|..++.+++... +++|||.||+|++||.+.- +...++......+.++...+.+ +.++.++.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s-~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTS-LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--DQFAVSTKD 1119 (1431)
T ss_pred hhhhccccccceeecCCCCc-eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--CeEEEEcCC
Confidence 56778999999999887633 7999999999999997642 2223344345667777666555 689999999
Q ss_pred CeEEEEeCCCCCcee-------EeeC--CCCceEEEEECCC-CC-EEEEEEeCCCCceEEEEEeCCCCeEEEEEec--CC
Q 002196 531 GKIKAWLYDNLGSRV-------DYDA--PGHSSTMMAYSAD-GA-RLFSCGTNKEGESYLVEWNESEGAVKRTYHG--LG 597 (954)
Q Consensus 531 g~i~iwd~~~~~~~~-------~~~~--~~~~v~~~~~s~~-g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~ 597 (954)
|.|++.+++...... .... .+.-+..-+|... +. .++.+.. .+.|..||.++......++. .+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~----~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD----LSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEe----ccceEEecchhhhhHHhhhcCccc
Confidence 999999987632111 1111 1122333334332 23 4444443 23489999987765544432 23
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC---CEEEEEe--CCCcEEEEEcc
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG---ILLAVST--NDNGIKILANA 672 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~s~~--~dg~i~iwd~~ 672 (954)
+ .|++++.+|.+.+++.|+..|.+.+||++=+.++..+..+.+ ..++.+..+|-. ...++++ ..+.|.+|++.
T Consensus 1196 G-~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1196 G-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred c-ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 3 799999999999999999999999999999999988876544 578888877732 4555444 46789999999
Q ss_pred CC
Q 002196 673 DG 674 (954)
Q Consensus 673 ~~ 674 (954)
+|
T Consensus 1274 ~g 1275 (1431)
T KOG1240|consen 1274 TG 1275 (1431)
T ss_pred cC
Confidence 98
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.7e-13 Score=132.17 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=188.8
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CCEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGV 435 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s 435 (954)
..+..++|++.-- -+|++..|-.|++||-....... +-......|+|++|-|. ++.|+.
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceeee
Confidence 4678899999554 56888899999999977632111 11234578999999995 567777
Q ss_pred EEcCCEEEEEEeeCCcce-e----------eeeeeecccCCEEEEEEecCCCceEEEEEcC-CCeEEEEECCCCceEEEe
Q 002196 436 AYSKHIVHLYTYHGGDEL-R----------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~-~----------~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 503 (954)
|+..| |.||..+..... + ......+| .+|++|+|.+||. .+++++. |..|.|||+.++..+...
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 77766 899976531110 0 11123344 6899999999999 4677664 679999999999877665
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE--
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE-- 581 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i-- 581 (954)
....+.+.-+.|+|++ .+++.++-|+..++|.....-.........+.|...+|+|+|++|+..... ...++-
T Consensus 235 ~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~ 309 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLT 309 (445)
T ss_pred ccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEe
Confidence 5556778889999877 699999999999999655433333333344589999999999988776532 111221
Q ss_pred EeCCCCe-----------EEEEEe------c--CCCCCeEEEEEeCCCCEEEEEECC--------CeEEEEECCCCceeE
Q 002196 582 WNESEGA-----------VKRTYH------G--LGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLLA 634 (954)
Q Consensus 582 wd~~~~~-----------~~~~~~------~--~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~ 634 (954)
++-+.+. ++..+. + .-.+.+.+++|.|.|.++++.-.. +.|.+||.+..-.+.
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 1111111 011110 1 012367889999999999986532 347778877654444
Q ss_pred EEe-cCCCCCCcceEEECC---CCCEEEEEeCCCcEEEEEcc
Q 002196 635 SID-ADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 635 ~~~-~~~~~~~v~~v~~s~---~~~~l~s~~~dg~i~iwd~~ 672 (954)
... +......-..++|+| ++.+|..+-..|.+.-|++.
T Consensus 390 ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 390 LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 331 111111235677776 67788888888888877653
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=2e-12 Score=127.06 Aligned_cols=280 Identities=11% Similarity=0.091 Sum_probs=190.2
Q ss_pred eeeCCCCCcceeecCCCCC-------cceEEEecCCCCeeEEEEcCCCCeEEEEEEcC--CeEEEEeCCCCceeeeeeeE
Q 002196 328 VAYTPQSLGQSSYSTDDLP-------KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFK 398 (954)
Q Consensus 328 ~~~s~~g~~~~~~~~~~~~-------~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~d--g~i~iwd~~~~~~~~~~~~~ 398 (954)
..|..++..+..++.++.. .++......+-.|.-+-||.. |+|..+.+ ..+++.+.+.+..+....
T Consensus 11 ~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-- 85 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF-- 85 (391)
T ss_pred eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe--
Confidence 3466666666666666541 112222234456778888876 55554443 358888888777665421
Q ss_pred EEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCce
Q 002196 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478 (954)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 478 (954)
...+|.++.++. +.|+++-.+. |+|||+++.+.+..+.+...+...+.++.+++.+..+
T Consensus 86 ------------------fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 86 ------------------FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred ------------------cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 346888888864 4566664444 9999999998887655555666778777777776632
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCe-EEEEeCCCCCceeEeeCCCC--ceE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGH--SST 555 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~--~v~ 555 (954)
.+=.....|.|.+||+.+-+.+..+..|.+.+-+++|++++ .+|+|+|..|+ ||++.+.++.....+..... .|+
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY 222 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE
Confidence 22234457899999999999999999999999999998766 89999999998 78999998888877765433 789
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE-------------------------------------EEEEecCCC
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-------------------------------------KRTYHGLGK 598 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-------------------------------------~~~~~~~~~ 598 (954)
+++|+|++++|.+.+.. .+|.+|.+..-.. ....+....
T Consensus 223 SL~Fs~ds~~L~~sS~T----eTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s 298 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNT----ETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPES 298 (391)
T ss_pred EEEECCCCCeEEEecCC----CeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCC
Confidence 99999999999888753 3488887653110 000011111
Q ss_pred CCeEEEEEe--CCCCEEEEEECCCeEEEEECCC--CceeEEEecC
Q 002196 599 RSVGVVQFD--TTKNRFLAAGDEFMIKFWDMDN--VNLLASIDAD 639 (954)
Q Consensus 599 ~~i~~~~~~--~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~ 639 (954)
..-..+.+. +....+..++.||.++.|.+.- |.....++.|
T Consensus 299 ~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 299 GRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred CccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 111223343 4668899999999999998754 4444444433
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=9.8e-13 Score=140.56 Aligned_cols=272 Identities=16% Similarity=0.131 Sum_probs=172.0
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~ 450 (954)
++++-..+|.|.|.|..+.+.+.+ +......-..+.|+|||+++++++.||.|.++|+.++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~-------------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVAR-------------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEE-------------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCCCeEEEE-------------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 445666789999999999887764 2222233445789999999999999999999999999
Q ss_pred cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC-------CCCeEEEeeeccCCccE
Q 002196 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH-------ESPVYSICPHHKENIQF 523 (954)
Q Consensus 451 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~ 523 (954)
+.++. +.. ......+++|+||+. ++++...++.+.++|.++.+.++.+... ...+.++..++..+ .+
T Consensus 69 ~~v~~---i~~-G~~~~~i~~s~DG~~-~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~f 142 (369)
T PF02239_consen 69 KVVAT---IKV-GGNPRGIAVSPDGKY-VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EF 142 (369)
T ss_dssp SEEEE---EE--SSEEEEEEE--TTTE-EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EE
T ss_pred cEEEE---Eec-CCCcceEEEcCCCCE-EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EE
Confidence 87763 332 334678999999995 3556667999999999999998877543 34566666555543 35
Q ss_pred EEEEecCCeEEEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC---C
Q 002196 524 IFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---R 599 (954)
Q Consensus 524 l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~ 599 (954)
+++.-..+.|.+.|......... ....+.......|+|++++++++... ...+.++|..+++.+..+..... .
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred EEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc---cceeEEEeeccceEEEEeecccccccc
Confidence 55555568888888876654432 33344567789999999999887643 33699999999988776643211 0
Q ss_pred CeEEEEEeCC----------CCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE----eCCCc
Q 002196 600 SVGVVQFDTT----------KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS----TNDNG 665 (954)
Q Consensus 600 ~i~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~----~~dg~ 665 (954)
+...+ .+|. +...++.-....+.+||..+.+.++.+...+. . ..+..+|+++++.+. ...+.
T Consensus 220 ~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~--g-lFi~thP~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 220 PGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG--G-LFIKTHPDSRYVWVDTFLNPDADT 295 (369)
T ss_dssp TEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS--S---EE--TT-SEEEEE-TT-SSHT-
T ss_pred ccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC--c-ceeecCCCCccEEeeccCCCCCce
Confidence 12211 1222 22332222333566789899999999987643 3 678889999999987 44578
Q ss_pred EEEEEccCC
Q 002196 666 IKILANADG 674 (954)
Q Consensus 666 i~iwd~~~~ 674 (954)
|.++|..+.
T Consensus 296 v~viD~~tl 304 (369)
T PF02239_consen 296 VQVIDKKTL 304 (369)
T ss_dssp EEEEECCGT
T ss_pred EEEEECcCc
Confidence 999998776
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=3.2e-12 Score=123.13 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=167.3
Q ss_pred CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccC--CEEEEEEecCCCceEEEEEcCC------CeEEE
Q 002196 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG--SVNDLAFSYPNKQLSVVTCGED------RVIKV 491 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~~l~s~~~d------g~i~i 491 (954)
...+++|+.|..-+++|..+| .+||+.+.-+... ....+.+ .+..|-|- .+. +.+.||.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEE
Confidence 445599999999999998777 7999987633211 1111222 23333332 332 23344433 58999
Q ss_pred EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC-CCCceeEeeCCCCceEEEEECC--CCCEEEE
Q 002196 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHSSTMMAYSA--DGARLFS 568 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~ 568 (954)
||=...+++.++. ...+|.++.+..+ .+++. ..+.|.+|... +.+....+.....+---++..| +...|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 9966777787776 6788999988753 34444 45889999887 4444444443332211333344 3333433
Q ss_pred EEeCCCCceEEEEEeCCCCeE--EEEEecCCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCceeEEEecCCCCCCc
Q 002196 569 CGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
-| ...+.|.+-|+...+. ...+..|.. .|.+++++-+|..++++|..|+ |||||..+|+.+..+........|
T Consensus 154 Pg---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PG---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CC---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 32 2346699999876554 466777877 9999999999999999998886 799999999999999876666789
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.+++|||+..+||++|+.|+++|+.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999988764
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.5e-15 Score=148.08 Aligned_cols=295 Identities=11% Similarity=0.138 Sum_probs=216.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+..|.+.|..+.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|.|.....-+++++.||.|++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 678999999999999999999999999999999998765432 245798899888898865433699999999999876
Q ss_pred CCC-Cce--EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC---CCC---ceEEEEECCCCC
Q 002196 494 AVT-GTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGH---SSTMMAYSADGA 564 (954)
Q Consensus 494 ~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~---~v~~~~~s~~g~ 564 (954)
+.. +.+ ...+..|.++|.-++..|... ..|.+++.|+.+.-+|++...+...+.. +.. ..+.++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 543 332 345667999999999888765 6899999999999999987665433221 222 567888888776
Q ss_pred -EEEEEEeCCCCceEEEEEeCCCCeE------EEEEecC-----CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--C
Q 002196 565 -RLFSCGTNKEGESYLVEWNESEGAV------KRTYHGL-----GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--V 630 (954)
Q Consensus 565 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~ 630 (954)
.+++++. +.++++||.+.-.. +.++..+ ..-.|++++++.++.-+++.-.|-.|+++.-.. |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5566654 44689999764321 2222222 223688999998888888877888899996432 2
Q ss_pred ----------ceeEE-EecCCCCCCcceEEE-CCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhcccc
Q 002196 631 ----------NLLAS-IDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (954)
Q Consensus 631 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 698 (954)
..... +++|.....|.++-| -|...++++|++=|.|.||+-.++ +.++.+.+....|..+...
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpH---- 445 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPH---- 445 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCC----
Confidence 12222 566766667888865 678899999999999999999888 7777776655544433221
Q ss_pred CCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
|--..|++++-|..|+||.-.+
T Consensus 446 --------------------------------------P~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 446 --------------------------------------PHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred --------------------------------------CCCchhhccCCccceeeecCCc
Confidence 2244678888999999998643
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.1e-13 Score=147.18 Aligned_cols=237 Identities=12% Similarity=0.112 Sum_probs=158.8
Q ss_pred eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc---CCEEEEEEeeCCcceeee
Q 002196 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNH 456 (954)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~---dg~i~iwd~~~~~~~~~~ 456 (954)
.|.+||........ +..+...+.+.+|||||+.|+..+. +..|.+|++.+++...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888887654322 3346678999999999999987653 3579999998876332
Q ss_pred eeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CCeE
Q 002196 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKI 533 (954)
Q Consensus 457 ~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i 533 (954)
+....+.+...+|+|||+.+ +++.+.+| .|++||+.+++.... ..+...+....|+|++ +.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG--~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDS--QNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCC--CEEEEEeCCCCCc
Confidence 22233445578999999963 33444454 599999988876544 3344566778888765 66766655 4444
Q ss_pred EEE--eCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC
Q 002196 534 KAW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (954)
Q Consensus 534 ~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 611 (954)
.+| |+.+... ..+...........|+|||++++..+.++ +...|.+||+.++.... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 454 5555433 33333444566789999999998876543 34568999998886443 33221 234578999999
Q ss_pred EEEEEECCC---eEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 612 RFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 612 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
.|+.++.++ .++++++ +|.....+..+ ...+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVST-DGRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEEC-CCCCeEECccC--CCCcCCcccCC
Confidence 999988665 3777887 45555556543 44678888887
No 221
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.59 E-value=8.7e-10 Score=130.94 Aligned_cols=421 Identities=10% Similarity=0.103 Sum_probs=246.7
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEE----EeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLY----TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +++....++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444332 22 2334567899999999999 56666667787776
Q ss_pred ECCCCceE------------------------EEeccCC------------------CCe----EEEeeeccCCccEEEE
Q 002196 493 DAVTGTKQ------------------------YIFEGHE------------------SPV----YSICPHHKENIQFIFS 526 (954)
Q Consensus 493 d~~~~~~~------------------------~~~~~~~------------------~~v----~~~~~~~~~~~~~l~s 526 (954)
+ ++...+ ..|.|.. +.+ ..+.+++.+||.++++
T Consensus 148 t-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred e-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 4 221111 1121110 001 2334555677899998
Q ss_pred Eec---C---CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec---CC
Q 002196 527 TAT---D---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LG 597 (954)
Q Consensus 527 ~s~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~ 597 (954)
.+. . +.+++|+-+ +..........+--.+++|-|.|++|++... ......|.+|. ++|-.-..|.. ..
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 875 2 469999854 2222222222233457899999999998875 23345577776 45544444433 23
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee--EEEecCCCCCCcceEEECCC-CCEEEEEeCCCcEEEEEccCC
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~s~~~dg~i~iwd~~~~ 674 (954)
...+..+.|++++..|+..-.|. |.+|...+.... +.+.... ...+..+.|+|. ...|...+.+|.+..++..-.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 44789999999999999987665 999999886533 3333222 234556999994 456777777788877654211
Q ss_pred CeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccc
Q 002196 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 754 (954)
Q Consensus 675 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw 754 (954)
...+... .+.....+..-...++.+-
T Consensus 382 -----v~~s~~~-------------------------------------------------~~~D~g~vaVIDG~~lllT 407 (928)
T PF04762_consen 382 -----VSRSPGS-------------------------------------------------SPNDNGTVAVIDGNKLLLT 407 (928)
T ss_pred -----EEecCCC-------------------------------------------------CccCceEEEEEeCCeEEEe
Confidence 0000000 0000011111111344444
Q ss_pred cccccc--CCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCccc
Q 002196 755 KLTEIT--EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGIL 832 (954)
Q Consensus 755 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~ 832 (954)
.+.... .+-....+. -...|.+++|++++..+++...||.+.+|.+................+ .....
T Consensus 408 pf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 477 (928)
T PF04762_consen 408 PFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI-----SLDSM 477 (928)
T ss_pred cccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc-----ccccc
Confidence 443322 222223333 346899999999999999999999999998765322210000000000 00000
Q ss_pred ccccCCCCCCCCCccEEEeccCCCeEEEec-C---CeEEEEEccccc---EEEeeCCCCCCeeEEEecCCCCceEEEEec
Q 002196 833 MTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (954)
Q Consensus 833 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d---g~i~iwd~~~~~---~~~~~~~h~~~v~~l~~sp~d~~~lasgs~ 905 (954)
...... .....+..++|..+...++... + ..+.++++...+ .......-.+.+..+...+ +...++.-..
T Consensus 478 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~ 554 (928)
T PF04762_consen 478 DISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTN 554 (928)
T ss_pred cccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEEC
Confidence 000000 1345678889988887777665 3 468888874332 2233332344566666665 4444666677
Q ss_pred CccEEEEeccc
Q 002196 906 DSSIQIYNVRV 916 (954)
Q Consensus 906 dg~i~iwd~~~ 916 (954)
||.+...+...
T Consensus 555 ~G~v~~~~~~~ 565 (928)
T PF04762_consen 555 DGKVFQLSSDG 565 (928)
T ss_pred CCEEEEeecCC
Confidence 88888666544
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.8e-13 Score=141.30 Aligned_cols=288 Identities=13% Similarity=0.141 Sum_probs=212.3
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
++++.|++...-+.+..+|||++++|+|...-.|++||+..-.+...+. -....|.-.-.|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 4567788999999999999999999999999999999998766543211 123455556666
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
.|-..++.-..|.+|.+..-- |.... +. -...-.+|+++.-... |+.++....|+-+++..|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy~----~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHYR----TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceeee----ee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 676777777778777665322 21111 11 1122345555544443 5556666789999999999999999888
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC------CCC-----ceEEEEECCCCCEEEEEEeCCCCc
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA------PGH-----SSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~-----~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
+.++++.+++.. .+|++|+.+|.|-.||.++......+.. +.. .|+++.|+.+|-.+++|+.+|
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G--- 250 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG--- 250 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC---
Confidence 999999988766 6899999999999999987665443322 111 589999999999999988654
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC--CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (954)
.+.+||+++.+++..-.....-+|..+.|.+.+ +.+++. ....++|||-.+|+....+.. ...++.+++-|++
T Consensus 251 -~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s 325 (703)
T KOG2321|consen 251 -SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS 325 (703)
T ss_pred -cEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence 499999999887765544444478888887653 445544 456899999999999988864 3458999999999
Q ss_pred CEEEEEeCCCcEEEEEcc
Q 002196 655 ILLAVSTNDNGIKILANA 672 (954)
Q Consensus 655 ~~l~s~~~dg~i~iwd~~ 672 (954)
.+++++-+++.+..|=+.
T Consensus 326 Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ceEEEecCCCcceeEEcc
Confidence 999999988877766543
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.4e-12 Score=127.28 Aligned_cols=296 Identities=16% Similarity=0.200 Sum_probs=191.0
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEeCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
..+..++|++.- ..++++..|-.|++||-...............|.+++|-|.+ +.|+++...+ |.+|....
T Consensus 99 ~dlr~~aWhqH~--~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-----IciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQHI--IAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-----ICIWSDSR 171 (445)
T ss_pred cceeeEeechhh--hhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-----eEEEEcCc
Confidence 345667777755 467888999999999977633333333344589999999975 4566665433 99997542
Q ss_pred C----eE----------EEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 587 G----AV----------KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 587 ~----~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
. +. +....+| .+|+++.|.+||..+++++ .|..|.|||..++..+..... +.+.+.-+.||
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwS 247 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWS 247 (445)
T ss_pred ccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEc
Confidence 1 11 1222333 4899999999999999998 788999999999887766532 24578899999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (954)
|||.+|.+++-|+..++|+........+
T Consensus 248 Pdgd~lfaAt~davfrlw~e~q~wt~er---------------------------------------------------- 275 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQENQSWTKER---------------------------------------------------- 275 (445)
T ss_pred CCCCEEEEecccceeeeehhcccceecc----------------------------------------------------
Confidence 9999999999999999996543311100
Q ss_pred CCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCC
Q 002196 732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN 811 (954)
Q Consensus 732 ~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~ 811 (954)
|-+ ..+.|...+|+|+|++|+.+... .-++|++.-....
T Consensus 276 ----------------------w~l------------------gsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~ 314 (445)
T KOG2139|consen 276 ----------------------WIL------------------GSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGED 314 (445)
T ss_pred ----------------------eec------------------cCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCC
Confidence 111 23478889999999988776643 5566776544333
Q ss_pred CCCcccCCC-C-ccccC-----CCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-C--------CeEEEEEccccc
Q 002196 812 STGKATTNQ-A-PQLWQ-----PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G--------GKISLFNMMTFK 875 (954)
Q Consensus 812 ~~g~~~~~~-~-i~l~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d--------g~i~iwd~~~~~ 875 (954)
+.+....+. . .-+-| ..+++.+ -.+.+.+++|.|.|.+||+.- . +.|.+||....-
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l--------~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRL--------CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCccc--------ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 332211110 0 00111 1122111 246788999999999999875 2 236778765433
Q ss_pred EEEee-CC--CCCCeeEEEecC--CCCceEEEEecCccEEEEecc
Q 002196 876 TMTTF-MP--PPPAATFLAFHP--QDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 876 ~~~~~-~~--h~~~v~~l~~sp--~d~~~lasgs~dg~i~iwd~~ 915 (954)
.+.-. -+ .......++|+| .++.+|.++-..|.+.-|++.
T Consensus 387 ~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 387 PVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 22211 01 112245666666 357788888888888877764
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=146.30 Aligned_cols=280 Identities=16% Similarity=0.168 Sum_probs=217.9
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
.-+.+.++.+|++ ++.|+..|.|..+|+.++++..+.. -...|..+.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence 3468899999995 5567788999999999998876522 33688999999999999988
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 517 (954)
....++|||-.. ..+. .+..| ..|..+.|.|..- +|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 667799999654 3344 23333 5689999999765 789999999999999999999999988888898888877
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC
Q 002196 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (954)
Q Consensus 518 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 597 (954)
.+ ..+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.|.|.. +.|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~----~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK----VKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc----eeEeeeccccccceeecCC
Confidence 65 68889999999999999998888889999999999999999999999988654 9999999888777666522
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEE-CCCCc--eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+...+++|..| +++.+....|.||. .-.+. .-..+-.|.-...|..+.|.|-..+|-.|...|.-.+.=+..|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 56778888654 45555556899995 22211 1112222333447999999998888888887776666555555
Q ss_pred Ce
Q 002196 675 IR 676 (954)
Q Consensus 675 ~~ 676 (954)
+.
T Consensus 412 eP 413 (545)
T KOG1272|consen 412 EP 413 (545)
T ss_pred CC
Confidence 33
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.8e-12 Score=144.67 Aligned_cols=237 Identities=12% Similarity=0.026 Sum_probs=162.2
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc---CCEEEEEEeeCCcceee
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRN 455 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~---dg~i~iwd~~~~~~~~~ 455 (954)
..|.+||........ +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 368888876554322 4567889999999999999998764 468999999887643
Q ss_pred eeeeecccCCEEEEEEecCCCceEEEEEcCCCe--EEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CC-
Q 002196 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG- 531 (954)
Q Consensus 456 ~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg- 531 (954)
.+..+.+.+...+|+|||+. ++++.+.++. |++||+.++.. ..+..+........|+|++ +.++..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCC
Confidence 34556677889999999996 3456666654 77789887765 4455566666677887765 66666653 33
Q ss_pred -eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC
Q 002196 532 -KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (954)
Q Consensus 532 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 610 (954)
.|++||+....... +......+....|+|||+.|+....+. +...|.+||+.++.. +.+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 57788876544333 333344566788999999998876433 346789999865543 333321 1 45678899999
Q ss_pred CEEEEEECC------CeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 611 NRFLAAGDE------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 611 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
+.|+..+.+ ..++++|+..+.. ..+.. ...+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccCcccCC
Confidence 998876532 3688888876554 34432 22456777876
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-12 Score=146.33 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=159.6
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC---CEEEEEEeeCCcceee
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRN 455 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~ 455 (954)
..|.+||........ +..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 368888886543322 34567789999999999999988743 469999998876432
Q ss_pred eeeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe-cCCe
Q 002196 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK 532 (954)
Q Consensus 456 ~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~dg~ 532 (954)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++.. .+..+.......+|++++ +.++..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 3334455668899999996 344555555 6999999888754 455555555667887765 6666665 4454
Q ss_pred --EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC
Q 002196 533 --IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (954)
Q Consensus 533 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 610 (954)
|.++|+.++... .+...+......+|+|||+.++....+ .+...|.+||+.+++.. .+... . ......|+|+|
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCC
Confidence 666666554432 222333445578999999999887643 33457999999888765 33221 1 33456899999
Q ss_pred CEEEEEEC---CCeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 611 NRFLAAGD---EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 611 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
++++..+. .+.|++++... .....+..+ ...+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccC--CCCCCCCccCC
Confidence 99888764 34688888854 444555433 34567778876
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=5e-12 Score=121.80 Aligned_cols=239 Identities=14% Similarity=0.214 Sum_probs=153.8
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEE-EECC------CeEEEE
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA-AGDE------FMIKFW 625 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d------g~i~iw 625 (954)
...+++|+.|..-++++..+| .++|+.+--+.......+.. .+.-+.+--..++++. ||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-----friyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-----FRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-----eEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 445699999999888887544 78888654222111111111 1111111112344444 3332 479999
Q ss_pred ECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccc
Q 002196 626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (954)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 705 (954)
|=....++.++.. ..+|.++.+.++ .|++.- .+.|+||...+..+.++.+....++
T Consensus 81 DD~k~~~i~el~f---~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP------------------ 136 (346)
T KOG2111|consen 81 DDLKERCIIELSF---NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP------------------ 136 (346)
T ss_pred ecccCcEEEEEEe---ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC------------------
Confidence 9777788888765 357899999866 454443 5799999998665555555432111
Q ss_pred cCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEe
Q 002196 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (954)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 785 (954)
....+++-+
T Consensus 137 -----------------------------------------------------------------------kGlC~~~~~ 145 (346)
T KOG2111|consen 137 -----------------------------------------------------------------------KGLCSLCPT 145 (346)
T ss_pred -----------------------------------------------------------------------CceEeecCC
Confidence 001111111
Q ss_pred cCCceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-C
Q 002196 786 NSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 863 (954)
Q Consensus 786 pdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d 863 (954)
.+...|+.=+ .-|.|+|-|+..... +.+ ..+. +|...|.|++++-+|.++|+++ .
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~-------------------~~p--~~I~--AH~s~Iacv~Ln~~Gt~vATaStk 202 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKP-------------------NAP--SIIN--AHDSDIACVALNLQGTLVATASTK 202 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCc-------------------CCc--eEEE--cccCceeEEEEcCCccEEEEeccC
Confidence 1122233222 237777776653211 101 1122 3999999999999999999999 7
Q ss_pred Ce-EEEEEcccccEEEeeCCCC--CCeeEEEecCCCCceEEEEecCccEEEEeccc
Q 002196 864 GK-ISLFNMMTFKTMTTFMPPP--PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 864 g~-i~iwd~~~~~~~~~~~~h~--~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~ 916 (954)
|+ |+|||..+|..+.+++-.. ..|.+|+||| ++.+||++|+.|+++|+.+..
T Consensus 203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 87 9999999999999987432 4599999999 999999999999999999875
No 228
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4e-11 Score=126.93 Aligned_cols=519 Identities=14% Similarity=0.172 Sum_probs=310.9
Q ss_pred ceeeeeeCCCCCcceeecCCCCCc----------------------ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCe
Q 002196 324 NILPVAYTPQSLGQSSYSTDDLPK----------------------TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGD 380 (954)
Q Consensus 324 ~i~~~~~s~~g~~~~~~~~~~~~~----------------------~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~ 380 (954)
+..|+.|.....++|.+..|++.+ ..-++++ |...|.-+.|+.+.+ -|.+...+|.
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~Gl 94 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGL 94 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCce
Confidence 456888999888999888776411 1123344 999999999999988 5788888999
Q ss_pred EEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeee
Q 002196 381 VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE 460 (954)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 460 (954)
|.||-+-.|....+ -+-....+.|.+++|+.||..++....||.|.|=.++.++...+ .++
T Consensus 95 IiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk 155 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK 155 (1189)
T ss_pred EEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc
Confidence 99999988865432 01233567899999999999999999999998888876553332 222
Q ss_pred cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-------ceEE----EeccCCCCeEEEeeecc------CCccE
Q 002196 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-------TKQY----IFEGHESPVYSICPHHK------ENIQF 523 (954)
Q Consensus 461 ~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~----~~~~~~~~v~~~~~~~~------~~~~~ 523 (954)
+ .-...+.|++|.+ .++.+-..|.+.++|.... .+.. .+......|-.++|... ++...
T Consensus 156 g--~~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 156 G--QLLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred h--heccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence 2 1245789999998 4677778899999995432 1111 12222233555554321 23368
Q ss_pred EEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC----c-eEEEEEeCCCCeEEEEEecCCC
Q 002196 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG----E-SYLVEWNESEGAVKRTYHGLGK 598 (954)
Q Consensus 524 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~----~-~~i~iwd~~~~~~~~~~~~~~~ 598 (954)
++.+-..|.+.+..-.+......+.. +-.+....|+++|..|++++.+.+. + ..|.+|. .-|..+.+++....
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~ 309 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS 309 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc
Confidence 99999999998876555555544443 3678899999999999999865432 1 2344444 45777888877665
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeE
Q 002196 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (954)
Q Consensus 599 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 678 (954)
.|++++|-..|-.++.+ .|+.|++=+++..-.-..+.. .+.|-..+.-+ -.-.|.+||..+.++.+
T Consensus 310 -~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~--------TvVy~y~~~e~----p~y~i~Fwdtk~nek~v 375 (1189)
T KOG2041|consen 310 -CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE--------TVVYVYQKEEL----PQYGIMFWDTKTNEKTV 375 (1189)
T ss_pred -eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee--------EEEEEEccCCC----cceEEEEEecccChhhh
Confidence 89999998776665554 478888877765332222210 11111111100 12357889998886666
Q ss_pred EEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccc-------
Q 002196 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS------- 751 (954)
Q Consensus 679 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i------- 751 (954)
+.+.+...-... ..+-. ++.-..++.+
T Consensus 376 K~V~~~~~~a~~---------~ehCv-------------------------------------L~~~~d~~~i~e~s~le 409 (1189)
T KOG2041|consen 376 KTVTHFENMAFY---------REHCV-------------------------------------LINRQDDGVIPEYSTLE 409 (1189)
T ss_pred hhhcceeehhee---------cccEE-------------------------------------EEeccccCCCcchhhhh
Confidence 555432221110 00000 0011111111
Q ss_pred ---cccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcc---cCCCCcccc
Q 002196 752 ---RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA---TTNQAPQLW 825 (954)
Q Consensus 752 ---~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~---~~~~~i~l~ 825 (954)
++|-+.- |..+..+....-..|.-.-..-++..++.++.+ .+.+|.+....+...-.. ...+...+=
T Consensus 410 ~~~~~~~l~L------CNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~D 482 (1189)
T KOG2041|consen 410 NRSRVYFLQL------CNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGD 482 (1189)
T ss_pred cccceEEEee------ecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCC
Confidence 1111110 011111110011112222223356666666665 778888765432110000 000011111
Q ss_pred CCCCcc----cc--cccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCc
Q 002196 826 QPPSGI----LM--TNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898 (954)
Q Consensus 826 ~~~~~~----~~--~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~ 898 (954)
|..+|. +- ...+.| ..++|.+++.| .++|..+- .|.|+-|.+.......... -+..|..++..- +..
T Consensus 483 dtp~ga~d~~l~ys~kt~~G--~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNC-nst 556 (1189)
T KOG2041|consen 483 DTPEGAQDRTLEYSTKTLLG--SKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNC-NST 556 (1189)
T ss_pred CCccchhhceeeccceeecc--CCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeecc-Ccc
Confidence 222221 00 112333 67888877775 57777777 8999999998877666554 456689999988 888
Q ss_pred eEEEEecCccEEEEecc---ccceEE-EecCCccceeEEEEecCCCe
Q 002196 899 IIAIGMEDSSIQIYNVR---VDEVKT-KLKGHQKRITGLAFSNTLNV 941 (954)
Q Consensus 899 ~lasgs~dg~i~iwd~~---~~~~~~-~~~~h~~~V~~l~~s~dg~~ 941 (954)
.+|+-.--|.+-+.|+. +|..+. .++.....|+.+.|..|+..
T Consensus 557 RlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~ 603 (1189)
T KOG2041|consen 557 RLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPN 603 (1189)
T ss_pred hhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCch
Confidence 89988888888888876 344333 44555667999999887643
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.6e-12 Score=144.10 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=148.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcC---CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 4567889999999999999987643 469999999886432 3334456678999999996 3456777877666
Q ss_pred E--ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CCeEEEEeCCCC-CceeEeeCCCCceEEEEECCCCCEEE
Q 002196 492 W--DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 492 w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
| |+..+. ...+..+........|++++ +.++..+. +|...+|.++.. .........+.......|+|||++++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 5 554444 45555555556667787765 66665553 566666755422 22222222333445678999999998
Q ss_pred EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCceeEEEecCCCCCC
Q 002196 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
..+..+ +...|.+||+.+++....... . ......|+|+|+.|+.++.++ .+++.++ ++.....+..+ .+.
T Consensus 344 ~~s~~~-g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g~ 416 (427)
T PRK02889 344 YISRVG-GAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GGD 416 (427)
T ss_pred EEEccC-CcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CCC
Confidence 776543 345799999988875433222 1 335678999999998887433 4666676 45555555543 345
Q ss_pred cceEEECCC
Q 002196 645 SPCIRFNKE 653 (954)
Q Consensus 645 v~~v~~s~~ 653 (954)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677888873
No 230
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.54 E-value=7.7e-12 Score=127.94 Aligned_cols=283 Identities=14% Similarity=0.108 Sum_probs=190.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..-++..++|||.|. +|++... ..|.+|.-..+..+.. --...|..+.|||+++||.
T Consensus 31 ~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~ 87 (561)
T COG5354 31 ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLV 87 (561)
T ss_pred cCcchhheeecCcch-heehhhc-cceEEccccchhheee---------------------eecCCceecccCcccceee
Confidence 344889999999999 5555544 4599999877664432 1236799999999999999
Q ss_pred EEEcCC---------------EEEEEEeeCCcceeeeeeeecccCC--EE-EEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 435 VAYSKH---------------IVHLYTYHGGDELRNHLEIEAHVGS--VN-DLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 435 s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
+=+..+ .+.+||+.+|..+. .+.+...+ .+ -+.|+-+++. ++-- ....++|+++ +
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t 160 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-T 160 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-C
Confidence 876543 48999999998766 44444443 45 6889988873 3322 3458999997 4
Q ss_pred CceE-EEeccC-CCCeEEEeeeccCCccEEEE-----EecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 497 GTKQ-YIFEGH-ESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 497 ~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
+... ..+..- ...|....++|.+++..|+. ...++++++|.+...............-..+.|.+.|+++++-
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence 4322 111111 34577778888766666554 3567889999988655554433333344568899999987764
Q ss_pred EeCC-------CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecCC
Q 002196 570 GTNK-------EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADG 640 (954)
Q Consensus 570 ~~~~-------~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 640 (954)
.... -|+..++++++....+.... ...+ +|...+|.|.++.+++.+ .+-.+.++|++.. ....+.
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~-pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--- 314 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD-PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--- 314 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccceec-cccc-cceeeeecccCCceeEEecccccceeecccccc-eEEecC---
Confidence 3211 12345788887743332222 3233 899999999998777655 7788999999875 433333
Q ss_pred CCCCcceEEECCCCCEEEEEeCC---CcEEEEEccCC
Q 002196 641 GLQASPCIRFNKEGILLAVSTND---NGIKILANADG 674 (954)
Q Consensus 641 ~~~~v~~v~~s~~~~~l~s~~~d---g~i~iwd~~~~ 674 (954)
...=+.+.|+|.+++++.++-| |.+-+||....
T Consensus 315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred -CcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 2234678999999999988766 67888887665
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.9e-12 Score=139.99 Aligned_cols=237 Identities=11% Similarity=0.075 Sum_probs=153.5
Q ss_pred ceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEc--CCeEEEEeCCCCceeeeeeeEEEeccCCCcccccccc
Q 002196 337 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 414 (954)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (954)
|+.+..+..... ....+...+.+.+|||||+.++.+... +..|.+|++.+++... +
T Consensus 181 l~~~d~dg~~~~--~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 181 LRVSDYDGYNQF--VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred EEEEcCCCCCCE--EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 555555543322 223466789999999999966655432 3579999998876433 1
Q ss_pred CCCCCCeEEEEEccCCCEEEEE-EcCC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VI 489 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i 489 (954)
....+.+...+|||||+.|+.. +.+| .|++||+++++.. .+..+...+....|+|||+. ++++...++ .|
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~-I~f~s~~~g~~~I 313 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN-LAYTSDQAGRPQV 313 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE-EEEEeCCCCCceE
Confidence 1223334568999999998865 3344 5888999887643 24445556789999999995 233433444 45
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecC---CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
+++|+.++... .+..+........|+|++ ++++..+.+ ..|.+||+.++.... +.. ........|+|||+.|
T Consensus 314 y~~d~~~g~~~-~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 314 YKVNINGGAPQ-RITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMV 388 (429)
T ss_pred EEEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEE
Confidence 55577766543 333334445567777655 667665543 358889988765433 222 2234567899999999
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 608 (954)
+..+.++. ...+.++++ +|.....+..+.. .+...+|+|
T Consensus 389 ~~~s~~~~-~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 389 IYSSSQGM-GSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEcCCC-ceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887543 456888887 4555566666554 677778876
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=9.6e-13 Score=134.98 Aligned_cols=254 Identities=10% Similarity=0.116 Sum_probs=166.0
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE-----ccCCC
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW-----SPDGT 431 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~ 431 (954)
+.+....++-.|.++.+-- ...+++|+...+..+.. ++....+.+- ...|-+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCC--CCceecccccccCCCCc
Confidence 3566666777777665433 34688898886543321 2222233332 2333344 34566
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeee--cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 509 (954)
-|+.|-..|.|.+.|....+ +....... -....|+|+.|-|.++. .++.+-.+|.++++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 78888888999998876532 21111111 13368999999998887 57888899999999861 1112
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 589 (954)
.+..++..-.++..+......+. .+..++..+......|...+|+|||++|++++.| ++++|||..+.++
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD----GfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD----GFLRIFDFDTQEL 324 (636)
T ss_pred CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecC----ceEEEeeccHHHH
Confidence 22222222222223322211110 1112333333344589999999999999999874 4699999998877
Q ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 590 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
+..++..-+ ...|++|+|||++|++|++|.-|.||.+...+.+..-+ +|...|..|+|.|
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeecc
Confidence 766665555 78899999999999999999999999999888877655 4588999999987
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3e-11 Score=125.43 Aligned_cols=282 Identities=12% Similarity=0.131 Sum_probs=183.6
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
..+.+..++|++|+ ++|.+ .+..++|++..++..+.+ .....+.++.|||-|++|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 44578899999998 55554 567899999998863322 12237899999999999875
Q ss_pred E-----EcC-----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 436 A-----YSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 436 ~-----~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
= ..+ -.+.+|+++++.... .+......-++..|++|.. ++.--..+.+.+|++..-+.+. -.-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 3 122 347799999843322 2222222226899999886 5555556789999987643222 123
Q ss_pred CCCCeEEEeeeccCCccEEEE-----EecCCeEEEEeCCCCCceeE---eeCCCCceEEEEECCCCCEEEEE-E--eCC-
Q 002196 506 HESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSC-G--TNK- 573 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~-~--~~~- 573 (954)
|...|..+.++|.+.-..+++ .+.-+.+++|.+.....-.. .......-..+.|++-|.-|++. + .|.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 577788888888754345544 34556799997762221111 01111233467788877644332 2 222
Q ss_pred ----CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 574 ----EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 574 ----~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
-|+..+++.++........+ ...++|+++.|+|+++.++++- .-.++.|+|++ +.++..+. .++=++
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~ 316 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNT 316 (566)
T ss_pred CccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccc
Confidence 13456888887733333333 3344999999999997766543 67789999985 45655554 335688
Q ss_pred EEECCCCCEEEEEeCC---CcEEEEEccCC
Q 002196 648 IRFNKEGILLAVSTND---NGIKILANADG 674 (954)
Q Consensus 648 v~~s~~~~~l~s~~~d---g~i~iwd~~~~ 674 (954)
+-|+|.|++++.++-+ |.|-|||+.+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 9999999999988875 78999998774
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=1.4e-10 Score=124.75 Aligned_cols=308 Identities=14% Similarity=0.217 Sum_probs=185.3
Q ss_pred EEEEecC----CeEEEEeCCCCCceeEe---eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC--CeE--EEE
Q 002196 524 IFSTATD----GKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GAV--KRT 592 (954)
Q Consensus 524 l~s~s~d----g~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~ 592 (954)
++.|+.. +.|.+|+++........ .........++++|++++|+++.......+.|..|++.. +.+ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455555 68888888443332221 123446677899999999999986531244566666544 443 333
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC-CceeEE---Eec--------CCCCCCcceEEECCCCCEEEE
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN-VNLLAS---IDA--------DGGLQASPCIRFNKEGILLAV 659 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~v~~v~~s~~~~~l~s 659 (954)
.... +.....++++|++++++++. .+|.|.++++.. +..... +.. ........++.++|+|+++++
T Consensus 82 ~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3322 22566799999999999998 689999999987 443333 211 011234678999999998877
Q ss_pred EeC-CCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCC
Q 002196 660 STN-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (954)
Q Consensus 660 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (954)
... ...|++|++......+....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~-------------------------------------------------------- 184 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVD-------------------------------------------------------- 184 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEE--------------------------------------------------------
T ss_pred EecCCCEEEEEEEeCCCceEEEee--------------------------------------------------------
Confidence 643 34788888866521111100
Q ss_pred CcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec-CCeEEEeeccCCCCCCCCccc
Q 002196 739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKAT 817 (954)
Q Consensus 739 ~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~v~lw~~~~~~~~~~g~~~ 817 (954)
.+..+ .....+.++|+|||+++.+..+ ++.|.++++... .|...
T Consensus 185 ----------------------------~~~~~---~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~----~g~~~ 229 (345)
T PF10282_consen 185 ----------------------------SIKVP---PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS----DGSLT 229 (345)
T ss_dssp ----------------------------EEECS---TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT----TTEEE
T ss_pred ----------------------------ccccc---cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc----CCcee
Confidence 00000 2455778999999999877776 688999987621 11100
Q ss_pred CCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcc--ccc--EEEeeCCCCCCeeEEE
Q 002196 818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMM--TFK--TMTTFMPPPPAATFLA 891 (954)
Q Consensus 818 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~--~~~--~~~~~~~h~~~v~~l~ 891 (954)
.. +.+.....+.........+++||||++|.++. .++|.+|++. ++. .+..+.......+.++
T Consensus 230 ~~-----------~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 230 EI-----------QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EE-----------EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred EE-----------EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 00 00000000101223677899999999998876 6889999993 333 3334443344589999
Q ss_pred ecCCCCceEEEEe-cCccEEEEecc--ccceEEEec-CCccceeEEEE
Q 002196 892 FHPQDNNIIAIGM-EDSSIQIYNVR--VDEVKTKLK-GHQKRITGLAF 935 (954)
Q Consensus 892 ~sp~d~~~lasgs-~dg~i~iwd~~--~~~~~~~~~-~h~~~V~~l~~ 935 (954)
++| +|++|+++. .++.|.+|+++ +|.+...-. .......||.|
T Consensus 299 ~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 299 FSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp E-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999 888888776 55689999774 666544332 23344566665
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.8e-12 Score=126.85 Aligned_cols=272 Identities=11% Similarity=0.111 Sum_probs=192.3
Q ss_pred CCCeeEEEEcCCCCeEEEEEE-cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGT-NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
...|..++|.-+++.-+..+. .+-.+..+.+........ .|++. .....+.+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 456778888777765444444 566677777666554432 12221 123345566666543 34677
Q ss_pred EEEcCCEEEEEEeeCCcceeee-eeeecccCCEEEEEEecCCCceEEEEEcCC--CeEEEEECCCCceEEEeccC-----
Q 002196 435 VAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEGH----- 506 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~----- 506 (954)
+|-.+|.+.+|..+.+..-... ..+. ....+..|.-++..+. ++++||.. ..+++||+...+.+..-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7889999999999854311111 1222 2255777777777776 57779998 89999999988655443211
Q ss_pred ----CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 507 ----ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 507 ----~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.-.++++.|.+..+...|++++.-+.+++||.+.... ...+....+.++++...|+|++++++...+ .+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g----~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG----QLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc----hhhe
Confidence 1234667777764457899999999999999987654 455777788999999999999999986544 4999
Q ss_pred EeCCCCeEEEE-EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 582 WNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 582 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
||.+.++.... +.+..+ .++++..+|.+++++++|-|+.|+|+|+.+.+++...... ..++++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK---s~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK---SRLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh---ccccEEEecC
Confidence 99999988877 666666 8999999999999999999999999999997777665442 2456666654
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=5.8e-14 Score=141.21 Aligned_cols=231 Identities=13% Similarity=0.153 Sum_probs=189.6
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
-.-..+.++.+|++|+.|+..|.|..+|..++.....+ . -...|.++.|..+.+ ++.......++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~-v~Etv~Dv~~LHneq---~~AVAQK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---N-VMETVRDVTFLHNEQ---FFAVAQKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee---e-hhhhhhhhhhhcchH---HHHhhhhceEEEec-CCCc
Confidence 45678999999999999999999999999998765422 2 345689999998877 45555668999999 7888
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. .++
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 88888855 458888998876 67888899999999999999888888777778888988998877777654 456
Q ss_pred EEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEE
Q 002196 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (954)
|.+|.+...+++..+..|.+ +|.++++.++|.+++|.|.|..++|||+++-..+.++.. ......+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-cee
Confidence 99999999999999999988 999999999999999999999999999999887777654 2356778888666 444
Q ss_pred EEeCCCcEEEEE
Q 002196 659 VSTNDNGIKILA 670 (954)
Q Consensus 659 s~~~dg~i~iwd 670 (954)
. +....|.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 4 3445899995
No 237
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.6e-12 Score=128.51 Aligned_cols=315 Identities=11% Similarity=0.169 Sum_probs=200.1
Q ss_pred eeeeeCCCCCcceeecCCCC------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEc-----------CCeEEEEeCCC
Q 002196 326 LPVAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN-----------MGDVMLWEVGS 388 (954)
Q Consensus 326 ~~~~~s~~g~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~-----------dg~i~iwd~~~ 388 (954)
+-+.|||-|.|+++.-..+. .-.-++.+.|. .|.-+.|||+.++ |+|=+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccc
Confidence 34689999999988854432 22334445554 6899999999994 555332 14799999999
Q ss_pred CceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEE
Q 002196 389 RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVND 468 (954)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 468 (954)
|.......+ +.+....-.-..||.|++++|--.. ..|.||+..+...+... .+ .-..|..
T Consensus 292 G~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K-sl--ki~gIr~ 351 (698)
T KOG2314|consen 292 GLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK-SL--KISGIRD 351 (698)
T ss_pred cchhcceec----------------cCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccc-cc--CCccccC
Confidence 987754221 1222222334789999999998766 45899987764332211 11 2346888
Q ss_pred EEEecCCCceEEEEEc--C---CCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-------C---CeE
Q 002196 469 LAFSYPNKQLSVVTCG--E---DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-------D---GKI 533 (954)
Q Consensus 469 ~~~s~~~~~~~l~s~~--~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-------d---g~i 533 (954)
..|+|.+. +|+--. . -..+.+-.+.+++.+++-.-|. |..+..+...+|.+|+.--. . ..+
T Consensus 352 FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 352 FSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 99999987 444221 1 2356667777777666554433 55555566666677764321 1 234
Q ss_pred EEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-C---eEEEEEecCCCCCeEEEEEeCC
Q 002196 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-G---AVKRTYHGLGKRSVGVVQFDTT 609 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~i~~~~~~~~ 609 (954)
-|+.++........-.-...|...+|-|.|..+++.+.+. ...++.+|.+.+ . +++..+.. ...+.+.|+|.
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPk 503 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT-VKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPK 503 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc-cccceeEEEeecCCCchhhhhhhcc---cccceEEEcCC
Confidence 5566655444333333345788899999999888776543 255688887763 2 33444433 25678999999
Q ss_pred CCEEEEEE---CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC------CcEEEEEcc
Q 002196 610 KNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND------NGIKILANA 672 (954)
Q Consensus 610 ~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d------g~i~iwd~~ 672 (954)
|++++.+. ..|.+.++|+.......+- ...| ...+.+.|.|.|+++++++.- .--++|++.
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 99999875 5789999998753332221 1122 246789999999999998764 344555554
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.7e-12 Score=140.35 Aligned_cols=224 Identities=13% Similarity=0.139 Sum_probs=146.6
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEEEc--CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 352 TLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~ll~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
...+...+.+.+|+|||+.++.+... ...|.+||+.+++... +..+.+...+.+||||
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFSPD 258 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceECCC
Confidence 34577789999999999965554433 3469999998876543 2223344567899999
Q ss_pred CCEEEE-EEcCC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe--EEEEECCCCceEEEec
Q 002196 430 GTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--IKVWDAVTGTKQYIFE 504 (954)
Q Consensus 430 g~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~ 504 (954)
|+.|+. .+.+| .|++||+.+++.. .+..+.......+|+|||+. ++++...+|. |+++|+.+++.... .
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~~dl~~g~~~~l-t 332 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYRVAASGGSAERL-T 332 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-e
Confidence 998864 45555 5999999887643 34555556678899999995 2334444554 77778777764332 2
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCC---eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.+.......+|+|++ ++++..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+...+.+
T Consensus 333 ~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~ 407 (433)
T PRK04922 333 FQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGVLAA 407 (433)
T ss_pred cCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCceEEEE
Confidence 233334457777765 6676654433 5899998776544 222 22244567999999998887764 34567889
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEeC
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~~ 608 (954)
++... .....+..+.+ .+...+|+|
T Consensus 408 ~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 408 VSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EECCC-CceEEcccCCC-CCCCCccCC
Confidence 99854 44455544333 456666765
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=6.5e-13 Score=136.22 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=118.2
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceee-----------eeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA-----------VKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
...|+|+.|-|.+..+++++..+|.+++||..---... ...+..|.-.....+... +.--.+.|...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~--w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR--WHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccce--eEeccccccce
Confidence 47899999999988888999999999999863211000 011111111111111111 11234589999
Q ss_pred EEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 425 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
+|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ +|++|+.|--|.||.+..++.+..=+
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 999999999999999999999999876655 3444557899999999999 89999999999999999999999999
Q ss_pred cCCCCeEEEeee
Q 002196 505 GHESPVYSICPH 516 (954)
Q Consensus 505 ~~~~~v~~~~~~ 516 (954)
+|...|..++|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999997
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.3e-12 Score=138.45 Aligned_cols=225 Identities=17% Similarity=0.205 Sum_probs=144.8
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEEEcC--CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 352 TLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~ll~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
...+...+.+.+|||||+.++++...+ ..|.+||+.+++... +....+.+.+.+||||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSPD 250 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECCC
Confidence 345778899999999999665554333 369999999886543 1223345678999999
Q ss_pred CCEEEE-EEcCCEEEEEEee--CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE--ECCCCceEEEec
Q 002196 430 GTLFGV-AYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW--DAVTGTKQYIFE 504 (954)
Q Consensus 430 g~~l~s-~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~ 504 (954)
|+.|+. .+.+|...||.++ ++. .. .+..+.+......|+|||+.+ ++++..++...+| ++.++..... .
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~~~g~~~~l-t 324 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPASGGAAQRV-T 324 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEECCCCceEEE-e
Confidence 998875 5677776676654 433 22 345555566778999999962 3344445655666 4445543322 2
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCC---eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.+........|+|++ ++++..+.++ .|.+||+.++....... ........|+|||+.|+..+..+ +...+.+
T Consensus 325 ~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~l~~ 399 (427)
T PRK02889 325 FTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSVLAA 399 (427)
T ss_pred cCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEEEEE
Confidence 222233456677655 6777766554 59999998765443222 23346789999999999887654 3556777
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEeCC
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~~~ 609 (954)
.+. ++.....+..+.+ .+...+|+|-
T Consensus 400 ~~~-~g~~~~~l~~~~g-~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGG-DVREPSWGPF 425 (427)
T ss_pred EEC-CCCceEEeecCCC-CCCCCccCCC
Confidence 777 4555555554433 5666677763
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=5.7e-10 Score=110.64 Aligned_cols=302 Identities=12% Similarity=0.140 Sum_probs=190.6
Q ss_pred CCeEEEEeCCCCCceeE---eeCCCCceEEEEECCCCCEEEEEEeCC-CCceEEEEEeCCCCeEEEEEec-CCCCCeEEE
Q 002196 530 DGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKRTYHG-LGKRSVGVV 604 (954)
Q Consensus 530 dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~-~~~~~i~~~ 604 (954)
+.-|++|++++...... .......++-++|+|++++|+++..++ .+....+-||.++|++...-.. ..+.+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46699999985443222 223445778899999999999988763 3333445566665765432211 122244779
Q ss_pred EEeCCCCEEEEEE-CCCeEEEEECCC-CceeEEEecCCCC----------CCcceEEECCCCCEEEEEeCC-CcEEEEEc
Q 002196 605 QFDTTKNRFLAAG-DEFMIKFWDMDN-VNLLASIDADGGL----------QASPCIRFNKEGILLAVSTND-NGIKILAN 671 (954)
Q Consensus 605 ~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~----------~~v~~v~~s~~~~~l~s~~~d-g~i~iwd~ 671 (954)
++++++++++++. ..|.|.++-++. |.+........|. ..+....+.|++++|++..-. -+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 9999999999998 668999999865 4433332211112 227889999999999887532 37888888
Q ss_pred cCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccc
Q 002196 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (954)
Q Consensus 672 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i 751 (954)
..+ .+...-.
T Consensus 175 ~dg-~L~~~~~--------------------------------------------------------------------- 184 (346)
T COG2706 175 DDG-KLTPADP--------------------------------------------------------------------- 184 (346)
T ss_pred ccC-ccccccc---------------------------------------------------------------------
Confidence 765 1110000
Q ss_pred cccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec-CCeEEEeeccCCCCCCCCcccCCCCccccCCCCc
Q 002196 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG 830 (954)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~ 830 (954)
..+ ......+.++|+|++++....++ +++|.+|.++.. .|+.. .+.+-
T Consensus 185 --------------~~v-----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----~g~~~--------~lQ~i 233 (346)
T COG2706 185 --------------AEV-----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----VGKFE--------ELQTI 233 (346)
T ss_pred --------------ccc-----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----CceEE--------Eeeee
Confidence 000 02345677999999998888876 899999987642 11110 11111
Q ss_pred ccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEccc--ccE--EEeeCCCCCCeeEEEecCCCCceEEEEe
Q 002196 831 ILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT--FKT--MTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (954)
Q Consensus 831 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~sp~d~~~lasgs 904 (954)
..+...+. ......++.++|||++|.++. ...|.+|.+.. +++ +.....+....+...|++ +|++|+++.
T Consensus 234 ~tlP~dF~---g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~ 309 (346)
T COG2706 234 DTLPEDFT---GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAAN 309 (346)
T ss_pred ccCccccC---CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEc
Confidence 11122222 355677889999999999987 46788888753 322 222333444578999999 888888887
Q ss_pred cCc-cEEEEecc--ccceEEEec-CCccceeEEEEe
Q 002196 905 EDS-SIQIYNVR--VDEVKTKLK-GHQKRITGLAFS 936 (954)
Q Consensus 905 ~dg-~i~iwd~~--~~~~~~~~~-~h~~~V~~l~~s 936 (954)
.++ .|.+|.++ +|++-.... .......||.|.
T Consensus 310 q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 310 QKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 664 78888765 566544333 344455667664
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.5e-11 Score=124.09 Aligned_cols=328 Identities=15% Similarity=0.155 Sum_probs=204.6
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-----C-----CC
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-----D-----EF 620 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~-----dg 620 (954)
...++..+++++|++++.+.. ..+.|++..++..+...... .+..+.|+|.+.++.+-- . .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-----~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-----QVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-----CeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 335778899999999988763 24899998888644443332 578899999999988731 1 23
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCC
Q 002196 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 700 (954)
.+.+|++.++.....+..... .-.+..|++|..+.|- -..+.+++|+..+.......+... .+...
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q--~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~--~i~~f--------- 171 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQ--NGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVS--GITML--------- 171 (566)
T ss_pred ceeeeeeccceehhheehhhh--cCcccccccchhhhhh-hhcceEEEEecCCccceeeeeecc--ceeeE---------
Confidence 577999999666655554322 2258889988755432 234689999987754444433321 11111
Q ss_pred ccccccCCCCCcccccccccccccccc-ccCCCCCCCCCCcccccccccccccccccccccC--CCceeEEecCCCCCcc
Q 002196 701 AIGTFGSANANVGTSLGERTAPAAAMV-GMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE--PSQCRSLRLPDNLTAM 777 (954)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~ 777 (954)
.+++. +....+ .|-+ -..+.-..+++|....... ....+.+ ...
T Consensus 172 ----------~lSpg------p~~~~vAvyvP-----------e~kGaPa~vri~~~~~~~~~~~~a~ksF------Fka 218 (566)
T KOG2315|consen 172 ----------SLSPG------PEPPFVAVYVP-----------EKKGAPASVRIYKYPEEGQHQPVANKSF------FKA 218 (566)
T ss_pred ----------EecCC------CCCceEEEEcc-----------CCCCCCcEEEEeccccccccchhhhccc------ccc
Confidence 01110 000001 1111 1334446788888762111 1111111 112
Q ss_pred ceEEEEEecCCceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCC
Q 002196 778 RVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (954)
Q Consensus 778 ~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 856 (954)
.-..+.|++-|.-|++.. .| ++. ....+....++.+.+.+..... ..+. ..++|.++.|+|+|+
T Consensus 219 dkvqm~WN~~gt~LLvLastd-------VDk----tn~SYYGEq~Lyll~t~g~s~~-V~L~---k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTD-------VDK----TNASYYGEQTLYLLATQGESVS-VPLL---KEGPVHDVTWSPSGR 283 (566)
T ss_pred ceeEEEeccCCceEEEEEEEe-------ecC----CCccccccceEEEEEecCceEE-EecC---CCCCceEEEECCCCC
Confidence 223577888877554332 21 110 1112333344555555522222 2232 478999999999999
Q ss_pred eEEEec---CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecC---ccEEEEeccccceEEEecCCccce
Q 002196 857 YVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVRVDEVKTKLKGHQKRI 930 (954)
Q Consensus 857 ~la~~s---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~d---g~i~iwd~~~~~~~~~~~~h~~~V 930 (954)
-++++. =.++.|||++ +.++..+. .++=+++-|+| .|++|+.++-+ |.+.|||+.+.+++.++..-..
T Consensus 284 EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-- 357 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-- 357 (566)
T ss_pred EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--
Confidence 887765 3789999985 67776664 77789999999 89998887754 7999999999999999886543
Q ss_pred eEEEEecCCCeEEEecCCcceecC
Q 002196 931 TGLAFSNTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 931 ~~l~~s~dg~~l~s~s~Dg~I~i~ 954 (954)
+-+.|+|||++++|+..-=.+||+
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEec
Confidence 457999999999999887666664
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=9.8e-11 Score=120.00 Aligned_cols=316 Identities=13% Similarity=0.168 Sum_probs=209.7
Q ss_pred ceeeeeeCCCCCcceeecCCCC------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcC---------------CeEE
Q 002196 324 NILPVAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNM---------------GDVM 382 (954)
Q Consensus 324 ~i~~~~~s~~g~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~d---------------g~i~ 382 (954)
.+..++|||-|+++++...... ....+..+.| ..|..+.|||.++ +|++=+.. ..+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeec-CCceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 4556789999999888744322 2223334444 3799999999999 66765433 3599
Q ss_pred EEeCCCCceeee----------------------------eeeEEEeccCCCccccccccCCCCCCeEEEEEccCC--CE
Q 002196 383 LWEVGSRERIAV----------------------------KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG--TL 432 (954)
Q Consensus 383 iwd~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg--~~ 432 (954)
+||+.+|..+.. ..+.++++...........+. ...|....|||.| ..
T Consensus 112 vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 112 VWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDE 189 (561)
T ss_pred EEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCce
Confidence 999999988765 222333332211111111111 3678889999964 34
Q ss_pred EEE-----EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEc---------CCCeEEEEECCCCc
Q 002196 433 FGV-----AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG---------EDRVIKVWDAVTGT 498 (954)
Q Consensus 433 l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~---------~dg~i~iwd~~~~~ 498 (954)
||. .+..+.++||.+..+..+... .+.. ..=..+.|.+.|+.+++.+-. ....++++++....
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCeeeee-eeEe--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 443 356788999999876655432 2221 123467899999864333221 12578888877444
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
+... ....++|...+|.|.+++--+++|-.+-.+.++|++.. ..+......-+.+.|+|.+++++.++.+.. .+.
T Consensus 267 i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl-~gn 341 (561)
T COG5354 267 IPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNL-QGN 341 (561)
T ss_pred ccee-ccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCcc-ccc
Confidence 3333 35689999999999887555666678889999998864 444445556677889999999999887654 566
Q ss_pred EEEEeCCCCeEEE-EEecCCCCCeEEEEEeCCCCEEEEEE------CCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 579 LVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 579 i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
+.+||......+. .+.+.. ..-+.|+|+++++.+.. .|..|.|||+...... ..+.+.|.
T Consensus 342 i~i~~~~~rf~~~~~~~~~n---~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~ 408 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLN---TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWD 408 (561)
T ss_pred eEEeccCCceEEEEEeecCC---ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhcccc
Confidence 9999987765544 666543 45578999999988864 4778999998654332 34568888
Q ss_pred CCCCEEEEEeCCC
Q 002196 652 KEGILLAVSTNDN 664 (954)
Q Consensus 652 ~~~~~l~s~~~dg 664 (954)
|.|++.-+.+.+.
T Consensus 409 p~~~~~ttsSs~~ 421 (561)
T COG5354 409 PSGQYVTTSSSCP 421 (561)
T ss_pred CCcccceeeccCC
Confidence 8888776666553
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=1.7e-10 Score=128.66 Aligned_cols=194 Identities=13% Similarity=0.181 Sum_probs=149.4
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCC-----CeEEEEEccCCCE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-----SVNRVMWSPDGTL 432 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 432 (954)
.|....+.-+.+ .++.++.+..+.+||...+..... ..+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 344455555555 677888899999999988766542 11221 2233456777789
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE-EeccCCCCeE
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVY 511 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~ 511 (954)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|.|.++++|++++++... ..-+|+..|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999987332211 4889999999999999999 79999999999999999988776 6678999999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC-CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
.++|.+. .+++++.|.+.++|+.+..... .+..| ...+..++..++...+++++.|+. +++||...
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~----lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDST----LKLWDLNG 289 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcc----hhhhhhhc
Confidence 9999874 7999999999999976643333 44444 347899999998888888886544 89998754
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=5.6e-10 Score=118.47 Aligned_cols=485 Identities=11% Similarity=0.115 Sum_probs=279.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
......|++|+.... ++|+|+.||.++|-.+.+...-.... -+.....-.....+.||++.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445788999999888 78999999999999887643221100 0001111112234789999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE-EEeccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~ 513 (954)
+...+|.|.||-+-.|.-.... .-......|.+++|..||.+ +...-.||.|.+=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999999877643321 12234567899999999995 777788888877654432211 122221 12245
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCC-------cee----EeeCCCCceEEEEEC--------CCCCEEEEEEeCCC
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLG-------SRV----DYDAPGHSSTMMAYS--------ADGARLFSCGTNKE 574 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~~~----~~~~~~~~v~~~~~s--------~~g~~l~~~~~~~~ 574 (954)
.|+++. ..++.+-.+|.+.+||....- +.. .+...+..+..+.|. ||...++++..+|.
T Consensus 163 ~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 666654 667777788999999865321 111 112222345555553 46667777765432
Q ss_pred CceEEEEEeC-CCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC---------eEEEEECCCCceeEEEecCCCCCC
Q 002196 575 GESYLVEWNE-SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---------MIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 575 ~~~~i~iwd~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
+.+..- ....++..-.+ ..+..+.|+++|..++.+|.+. .|.+|.. -|+.+.+++.++ ..
T Consensus 241 ----~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg--~~ 310 (1189)
T KOG2041|consen 241 ----MQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPG--SC 310 (1189)
T ss_pred ----ehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCC--ce
Confidence 333322 22223222222 2577889999999999988532 4555543 467777777663 47
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccc
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (954)
|++++|-..|-.+|.+ .|+.|++=++... -.+..+.. .|..+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~-ykWgy~e~---TvVy~--------------------------------- 352 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPE-YKWGYIEE---TVVYV--------------------------------- 352 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeeccc-ceEEEeee---EEEEE---------------------------------
Confidence 9999998888777765 4678887666543 11111110 00000
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
+... . .-.-.|.+||..+.+.... .-....+++|..+--.|+.-..+|.+.-++
T Consensus 353 ----y~~~--e----------~p~y~i~Fwdtk~nek~vK----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s 406 (1189)
T KOG2041|consen 353 ----YQKE--E----------LPQYGIMFWDTKTNEKTVK----------TVTHFENMAFYREHCVLINRQDDGVIPEYS 406 (1189)
T ss_pred ----EccC--C----------CcceEEEEEecccChhhhh----------hhcceeehheecccEEEEeccccCCCcchh
Confidence 0000 0 0013567888765332211 112345677777777777777777776552
Q ss_pred ccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccE--------
Q 002196 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT-------- 876 (954)
Q Consensus 805 ~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~-------- 876 (954)
.-. .++ ++|-..--..+...+.. .-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 407 ~le-~~~-----------~~~~l~LCNSIGT~lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k 472 (1189)
T KOG2041|consen 407 TLE-NRS-----------RVYFLQLCNSIGTSLDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVK 472 (1189)
T ss_pred hhh-ccc-----------ceEEEeeecccCCcCCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhh
Confidence 110 000 00000000000000100 11122222223467788888877888886321110
Q ss_pred ------------------------EEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeE
Q 002196 877 ------------------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932 (954)
Q Consensus 877 ------------------------~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~ 932 (954)
.+++.|..++|.+++.|. ++|..|-..|.|+-|.+.++-+..+.. -+..|.+
T Consensus 473 ~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~ 548 (1189)
T KOG2041|consen 473 IRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYS 548 (1189)
T ss_pred hcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchhee
Confidence 123445566788888864 688889999999999998876555443 2344555
Q ss_pred EEEecCCCeEE
Q 002196 933 LAFSNTLNVLV 943 (954)
Q Consensus 933 l~~s~dg~~l~ 943 (954)
++..-+...++
T Consensus 549 ~~lNCnstRlA 559 (1189)
T KOG2041|consen 549 IKLNCNSTRLA 559 (1189)
T ss_pred EeeccCcchhh
Confidence 55554444333
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=5.9e-11 Score=132.48 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=146.8
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEc--CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
..|...+.+.+|||||+.++.+... +..|.+||+.+++... +..+.+.+.+.+|||||
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSPDG 257 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECCCC
Confidence 3577899999999999966555433 4689999998886542 33455677889999999
Q ss_pred CEEEE-EEcCCE--EEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEecc
Q 002196 431 TLFGV-AYSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 431 ~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~ 505 (954)
+.|+. .+.++. |.+||+.++... .+..+........|+|||+.+ +++...+| .|++||+.++.... +..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~i-~f~s~~~g~~~Iy~~d~~g~~~~~-lt~ 331 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQI-VFESDRSGSPQLYVMNADGSNPRR-ISF 331 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCEE-EEEECCCCCCeEEEEECCCCCeEE-eec
Confidence 98764 455554 777788877543 355566667789999999963 33333333 78888987665443 333
Q ss_pred CCCCeEEEeeeccCCccEEEEEecC---CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCc--eEEE
Q 002196 506 HESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE--SYLV 580 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~--~~i~ 580 (954)
+...+....|+|++ +.++..+.+ ..|.+||+..... ..+. ....+....|+|||+.|+..+.+.... ..++
T Consensus 332 ~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 332 GGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred CCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 44556667787765 677666543 3578888755433 2222 233567889999999988876543221 4688
Q ss_pred EEeCCCCeEEEEEecCCCCCeEEEEEeC
Q 002196 581 EWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 608 (954)
++|+..+.. ..+.. .. .+...+|+|
T Consensus 408 ~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEccC-CC-CccCcccCC
Confidence 888876554 33432 22 355566665
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.9e-11 Score=124.37 Aligned_cols=285 Identities=14% Similarity=0.176 Sum_probs=188.2
Q ss_pred cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC--CCeEEEeeeccCCccEEEEEecCCeEEEEeC
Q 002196 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE--SPVYSICPHHKENIQFIFSTATDGKIKAWLY 538 (954)
Q Consensus 461 ~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 538 (954)
.|...-+.|..+|||++ ++++|...-.|++||+..-.+. |..|. ..|.-.-.+.+- ..++.-..|.+|-+...
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~--SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDY--SKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEeccch--hhheEeecCceeeehhh
Confidence 46777899999999998 5888888999999998765543 33332 233333222222 34555556677655422
Q ss_pred CCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC
Q 002196 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 539 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 618 (954)
.. .-..... ...-..++++.-..-|++++...+ |+-+++..|+.+..+..... .++++..++-..+|++|+.
T Consensus 124 ~G--~hy~~RI-P~~GRDm~y~~~scDly~~gsg~e----vYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 124 YG--RHYRTRI-PKFGRDMKYHKPSCDLYLVGSGSE----VYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred cC--eeeeeec-CcCCccccccCCCccEEEeecCcc----eEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 11 1111111 112345556544334444443332 88999999999988887655 8999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEecCC---------CCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccce
Q 002196 619 EFMIKFWDMDNVNLLASIDADG---------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS 689 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 689 (954)
+|.|.+||.+....+..+.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+...++..-.+....+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 9999999999887776665322 2335899999999999999999999999999987554443333332322
Q ss_pred ecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEe
Q 002196 690 RVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769 (954)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~ 769 (954)
.+.+. .. +.+..+.......++||+-.+...... +.
T Consensus 276 ~l~~~------------------------------------~~-----~~q~~v~S~Dk~~~kiWd~~~Gk~~as---iE 311 (703)
T KOG2321|consen 276 KLDWQ------------------------------------DT-----DQQNKVVSMDKRILKIWDECTGKPMAS---IE 311 (703)
T ss_pred eeccc------------------------------------cc-----CCCceEEecchHHhhhcccccCCceee---cc
Confidence 22110 00 122233333447899999876333221 11
Q ss_pred cCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccC
Q 002196 770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR 807 (954)
Q Consensus 770 ~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~ 807 (954)
....+..+|+-|++-.++++-+++.+..|=++.
T Consensus 312 -----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 312 -----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred -----ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 345689999999999999999988877776554
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=4.3e-09 Score=113.32 Aligned_cols=247 Identities=13% Similarity=0.166 Sum_probs=161.8
Q ss_pred CCCeEEEEEccCCCEEEEEEc----CCEEEEEEeeCC-cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 418 TASVNRVMWSPDGTLFGVAYS----KHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
......++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 356677999999999999877 479999999875 334333344434456678999999995 34555579999999
Q ss_pred ECCC-CceEEE---ec----------cCCCCeEEEeeeccCCccEEEEEe-cCCeEEEEeCCCCCc-e---eEe-eCCCC
Q 002196 493 DAVT-GTKQYI---FE----------GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGS-R---VDY-DAPGH 552 (954)
Q Consensus 493 d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~-~---~~~-~~~~~ 552 (954)
++.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... . ... ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 443322 21 123446778887765 5666654 345799999987652 1 122 23455
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC--CCeE--EEEEecC----CC-CCeEEEEEeCCCCEEEEEE-CCCeE
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAV--KRTYHGL----GK-RSVGVVQFDTTKNRFLAAG-DEFMI 622 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~----~~-~~i~~~~~~~~~~~l~~~~-~dg~i 622 (954)
....+.|+|+++++++.... ...|.++++. ++.. +..+... .. .....+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 78999999999999988642 4457777766 5532 3333221 11 1467899999999988877 67799
Q ss_pred EEEECC--CCce--eEEEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEcc
Q 002196 623 KFWDMD--NVNL--LASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANA 672 (954)
Q Consensus 623 ~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~ 672 (954)
.+|++. ++++ +..+... ....+.++++|+|++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 2333 3333322 22468999999999998877 45789999774
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.5e-11 Score=120.25 Aligned_cols=245 Identities=9% Similarity=0.121 Sum_probs=180.2
Q ss_pred CCCCeEEEEEccCCC--EEEEEEcCCEEEEEEeeCCcceeee---eeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 417 YTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNH---LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 417 h~~~V~~l~~spdg~--~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
....|+.++|.-|++ .|...+.+..+....+......... .......++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 446788888887654 4444446666777776655433321 1233455677777765 45 4899999999999
Q ss_pred EECCCCc----eEEEeccCCCCeEEEeeeccCCccEEEEEecC--CeEEEEeCCCCCceeEeeCCC---------CceEE
Q 002196 492 WDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPG---------HSSTM 556 (954)
Q Consensus 492 wd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~v~~ 556 (954)
|....+. .+..+..+ ..+..+.-++... ..+++|+.. ..+.+||+...+++..-.... -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 33344433 3455555444333 577789998 889999999875554432211 15678
Q ss_pred EEECCC--CCEEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee
Q 002196 557 MAYSAD--GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 557 ~~~s~~--g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
+.|-+. ...+++++. .+++++||.+.+ +++..+..... ++.++...|+++++++|..-|.+..+|.+.++.+
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 889887 788888875 456999999876 56777776655 8999999999999999999999999999999888
Q ss_pred EE-EecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 634 AS-IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 634 ~~-~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.. +.+. .+.|+++..+|.++++++++-|..+||+|+.+.
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 5544 568999999999999999999999999999885
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=4.1e-11 Score=116.42 Aligned_cols=250 Identities=14% Similarity=0.149 Sum_probs=158.3
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc--ceeeeeeeeccc------------CCEEEEEEecCCCceEEEEE
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVTC 483 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~~~~s~~~~~~~l~s~ 483 (954)
..-|.++.|...|.+||+|..+|.|.++.-+... .......+..|. ..|..+.|.+++....++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678899999999999999999999999654321 122222344443 45889999999887678889
Q ss_pred cCCCeEEEEECCCCceEE-----EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 484 GEDRVIKVWDAVTGTKQY-----IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 484 ~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
+.|.+|++|.+....... ..++....+.++.. .+.+..|-.+-.. ........|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~--------p~~~~~~~~vea~-----prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL--------PVEGRHDLEVEAS-----PRRVYANAHTYHINSIS 171 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec--------eeeccccceeeee-----eeeeccccceeEeeeee
Confidence 999999999876543221 11112222333321 1111111111000 01111234566899999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeE---EEEEecCCC----CCeEEEEEeCCC-CEEEEEECCCeEEEEECCCC
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGK----RSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~----~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 630 (954)
++.|+..++++- +-.|.+|++.-... +..++.+.. ..|++..|+|.. +.++-.+..|+|++-|++..
T Consensus 172 ~NsD~Et~lSAD-----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 172 VNSDKETFLSAD-----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred ecCccceEeecc-----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 999999999874 55689998764321 222222211 257788899864 67777788999999999843
Q ss_pred cee------EEEecC--------CCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccc
Q 002196 631 NLL------ASIDAD--------GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTF 686 (954)
Q Consensus 631 ~~~------~~~~~~--------~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 686 (954)
.+- ...+.. .-...|..+.|+++|+++++-.. -+|++||+....+++...+-|..
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 211 111110 11245789999999999997643 58999999766567777666553
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=5.9e-10 Score=124.38 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=154.8
Q ss_pred CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCe--EEEeeeccCCccEEEEEecCCeEEEEeCCCC
Q 002196 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 464 ~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
+.|....+..+.+ .++.+..+..+.+||...+............. .++-+-...+.-++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 88 DWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 3455455555666 47888888999999998887776665332221 1122222233368999999999999998855
Q ss_pred CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE-EEecCCCCCeEEEEEeCCCCEEEEEECCC
Q 002196 542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEF 620 (954)
Q Consensus 542 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 620 (954)
+......+|.+.+.++.++.||+++++++.|+. +++|++.+.+... ..-+|.. .+..++|.|+ .++++++|.
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs----iRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS----IRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCcc----eeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccce
Confidence 555568889999999999999999999998665 9999999988766 5566766 8888999987 999999999
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.++|+.+ +..+..+..|.. ..+..++..++..++++++.|+.+++|+....
T Consensus 239 tcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 239 TCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999764 455557766643 36889999999999999999999999997653
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.1e-10 Score=127.56 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=143.4
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcC---CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VI 489 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i 489 (954)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++ .|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 4466788999999999999887543 258888998876432 2222334457899999996 344556666 48
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe-cCCe--EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
++||+.+++.. .+..+.......+|++++ +.++..+ .++. |.++|+.+++... +..........+|+|||+++
T Consensus 289 y~~dl~tg~~~-~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKALT-RITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 88898877654 444455556677888765 5565544 3444 6666766554332 22233334567899999999
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC-CC--eEEEEECCCCceeEEEecCCCCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EF--MIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
+..+.. .+...|.++|+.++.... +.... ......|+|+|+.|+..+. +| .+++++. +|.....+..+ ..
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QG 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CC
Confidence 887654 334568888988886533 22221 1224579999998887663 33 4777887 45555666543 33
Q ss_pred CcceEEECC
Q 002196 644 ASPCIRFNK 652 (954)
Q Consensus 644 ~v~~v~~s~ 652 (954)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 567788887
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=2.5e-09 Score=108.57 Aligned_cols=441 Identities=14% Similarity=0.106 Sum_probs=229.6
Q ss_pred CCCCeEEEEEccC--CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEE-----EEEcCCCeE
Q 002196 417 YTASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV-----VTCGEDRVI 489 (954)
Q Consensus 417 h~~~V~~l~~spd--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l-----~s~~~dg~i 489 (954)
|.-.....-..|| |..++..+.|. +..+++.+|+..+ +..|-+-|+...|+|+|+.+.+ -++..-+.+
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~r----itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDl 109 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLR----ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADL 109 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeE----EecccceeccccCCCCCcEEEEEEEEecCCCccccE
Confidence 4333334445675 55554444442 3444666776554 6778889999999999996322 023344568
Q ss_pred EEEECCCCceEEEeccCCCCeEEE-eeeccCCccEEEEEecCCeEEEE----eCCCCCceeEeeCCCCceEEEEECCCCC
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSI-CPHHKENIQFIFSTATDGKIKAW----LYDNLGSRVDYDAPGHSSTMMAYSADGA 564 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~s~s~dg~i~iw----d~~~~~~~~~~~~~~~~v~~~~~s~~g~ 564 (954)
++.+.+.|+..+..-- ...-+.+ -|.+++ ..+++...-.-..-| .+...+.... ...-++.+.+.+ .||
T Consensus 110 y~v~~e~Ge~kRiTyf-Gr~fT~VaG~~~dg--~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-~LnlGpathiv~-~dg- 183 (668)
T COG4946 110 YVVPSEDGEAKRITYF-GRRFTRVAGWIPDG--EIIVSTDFHTPFSQWTELYKVNVDGIKTE-PLNLGPATHIVI-KDG- 183 (668)
T ss_pred EEEeCCCCcEEEEEEe-ccccceeeccCCCC--CEEEEeccCCCcccceeeeEEccCCceee-eccCCceeeEEE-eCC-
Confidence 8888888876543221 2223333 344433 566655443222222 2222111110 111123333333 244
Q ss_pred EEEEEEeCCC--------CceEEEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC--eEEEEECCCCcee
Q 002196 565 RLFSCGTNKE--------GESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNVNLL 633 (954)
Q Consensus 565 ~l~~~~~~~~--------~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 633 (954)
.++.+-..-+ |...=.+|--.. |+...++....+ .|.+-.+-.+ +.......+| .|+--|+....+.
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~-~vS~PmIV~~-RvYFlsD~eG~GnlYSvdldGkDlr 261 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDG-NVSSPMIVGE-RVYFLSDHEGVGNLYSVDLDGKDLR 261 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCC-CcCCceEEcc-eEEEEecccCccceEEeccCCchhh
Confidence 2222211000 000112342222 212222211111 2222112111 1122222333 4444444332221
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccc-cccceecchhccccCCccccccCCCCCc
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESR-TFDASRVASAAIVKAPAIGTFGSANANV 712 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 712 (954)
. |.....-.+=-.+.||+.++. +..|.|.++|+.+. . +..+.-. .-.-
T Consensus 262 r----HTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td-~-lekldI~lpl~r------------------------ 310 (668)
T COG4946 262 R----HTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETD-S-LEKLDIGLPLDR------------------------ 310 (668)
T ss_pred h----cCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcC-c-ceeeecCCcccc------------------------
Confidence 1 111122233445668888775 45688999999875 2 2222210 0000
Q ss_pred cccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEE
Q 002196 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL 792 (954)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 792 (954)
.+...+...|...+.. -...+|++++..+. |...+.+... ...+.. ++...|.-..+.-++..++
T Consensus 311 k~k~~k~~~pskyled-----fa~~~Gd~ia~VSR-GkaFi~~~~~------~~~iqv---~~~~~VrY~r~~~~~e~~v 375 (668)
T COG4946 311 KKKQPKFVNPSKYLED-----FAVVNGDYIALVSR-GKAFIMRPWD------GYSIQV---GKKGGVRYRRIQVDPEGDV 375 (668)
T ss_pred ccccccccCHHHhhhh-----hccCCCcEEEEEec-CcEEEECCCC------CeeEEc---CCCCceEEEEEccCCcceE
Confidence 0000000001111111 11234566655554 4444433221 111111 2556687777888888889
Q ss_pred EeecCC-eEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEE
Q 002196 793 ALASNA-VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFN 870 (954)
Q Consensus 793 ~~~~dg-~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd 870 (954)
.+..|| .+-+|+.. ++.... +.+ .-+.|.++..++||++++.+. ...+.+.|
T Consensus 376 igt~dgD~l~iyd~~----------------------~~e~kr--~e~--~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 376 IGTNDGDKLGIYDKD----------------------GGEVKR--IEK--DLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred EeccCCceEEEEecC----------------------CceEEE--eeC--CccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 999887 78887644 333222 222 557899999999999999998 58899999
Q ss_pred cccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCc----cEEEEeccccceEEEecCCccceeEEEEecCCCeEEE
Q 002196 871 MMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944 (954)
Q Consensus 871 ~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg----~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 944 (954)
+++|.....-+...+-|+..+|+| +++++|.+--+| .|+++|+.+++....-. ..+.=.+-+|.|||++|.-
T Consensus 430 idngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEE
Confidence 999987666555667799999999 999999988776 78999999988655433 3334457789999998753
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=1.4e-10 Score=112.80 Aligned_cols=264 Identities=13% Similarity=0.175 Sum_probs=174.4
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeE-EEeccCCCccccccccCCCCCCeEEEEEccCCC-
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK-VWELGACSMPLQASLSSDYTASVNRVMWSPDGT- 431 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 431 (954)
...+-|.++.|..+|. +||+|..+|.|.++.-.....- +..+. .+....+...+.. --.-...|..+.|.++++
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 3456789999999999 7899999999999975543221 11110 0000111111111 112346799999999655
Q ss_pred -EEEEEEcCCEEEEEEeeCCccee------------------e--------------eee-eecccCCEEEEEEecCCCc
Q 002196 432 -LFGVAYSKHIVHLYTYHGGDELR------------------N--------------HLE-IEAHVGSVNDLAFSYPNKQ 477 (954)
Q Consensus 432 -~l~s~~~dg~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~~~~~ 477 (954)
.++..+.|.+|++|.+....... . ... -.+|+.-|.++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56777799999999885432111 0 000 135778899999999988
Q ss_pred eEEEEEcCCCeEEEEECCCCce---EEEeccC-----CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee----
Q 002196 478 LSVVTCGEDRVIKVWDAVTGTK---QYIFEGH-----ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---- 545 (954)
Q Consensus 478 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---- 545 (954)
.+....|-.|.+|++.--.. +..++.+ ...|++..|+|... ..++-.+..|+|++.|++.....-
T Consensus 178 --t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 --TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred --eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 34455678999998764322 2223333 34578888998766 678888889999999998432111
Q ss_pred EeeC------------CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC-CCCeEEEEEecCCC-----------CCe
Q 002196 546 DYDA------------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE-SEGAVKRTYHGLGK-----------RSV 601 (954)
Q Consensus 546 ~~~~------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~-----------~~i 601 (954)
.+.. --..|..+.|+++|+++++-. -.++.+||+ ...+++.+++.|.. ..|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 0110 112678899999999999864 346999999 45567776665532 122
Q ss_pred ---EEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 602 ---GVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 602 ---~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
..++|+.++.++++|+....+++++...|
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34789989999999999999999996544
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.4e-10 Score=126.73 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=144.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcC---CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VI 489 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i 489 (954)
..+...+...+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||++ ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3466789999999999999887644 368999998876432 3333445567899999996 344555555 68
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe-cCC--eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
++||+.++... .+..+........|++++ +.++..+ .+| .|.++++.+++... +...........|+|+|+.+
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 88899887654 354455555666777665 5555544 344 47777776655332 22223334467899999999
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCceeEEEecCCCCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
+...... +...|.+||+.+++........ ......|+|+|+.++..+.+ ..|+++++.. .....+..+ ..
T Consensus 346 ~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~g 418 (430)
T PRK00178 346 VMVHRQD-GNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--QG 418 (430)
T ss_pred EEEEccC-CceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--CC
Confidence 8876532 3456899999887653322221 22345899999999887643 3577778754 333444432 33
Q ss_pred CcceEEECC
Q 002196 644 ASPCIRFNK 652 (954)
Q Consensus 644 ~v~~v~~s~ 652 (954)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 566777776
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.5e-10 Score=123.73 Aligned_cols=243 Identities=13% Similarity=0.101 Sum_probs=150.9
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE---EEEcCC--EEEEEEeeCCcce
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG---VAYSKH--IVHLYTYHGGDEL 453 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~---s~~~dg--~i~iwd~~~~~~~ 453 (954)
+.|.+.|...+.... +......+.+-+|||||+.++ +...+| .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777776654332 333455677889999998532 333343 5777788877643
Q ss_pred eeeeeeecccCCEEEEEEecCCCceEEEEEcC----CCeEEEEECCCC---ceEEEeccCCCCeEEEeeeccCCccEEEE
Q 002196 454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----DRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFS 526 (954)
Q Consensus 454 ~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 526 (954)
+ +....+.....+|+|||+++ +++... |..+..|++..+ ........+.......+|+|++ +.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEE
Confidence 2 33344556678999999963 344433 334445777653 3333333333344566787765 56665
Q ss_pred Ee-cCCeEEEEe--CCCC-CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeE
Q 002196 527 TA-TDGKIKAWL--YDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG 602 (954)
Q Consensus 527 ~s-~dg~i~iwd--~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~ 602 (954)
.+ .+|...+|. +... .....+......+....|+|||+.|+..+..+ +...|.+||+.+++....... .. .+.
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~~~~Lt~~-~~-~~~ 374 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGRDYQLTTS-PE-NKE 374 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCCeEEccCC-CC-Ccc
Confidence 54 566555554 4322 22333434444667889999999998876532 345799999998876543322 22 456
Q ss_pred EEEEeCCCCEEEEEE---CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC
Q 002196 603 VVQFDTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (954)
Q Consensus 603 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (954)
...|+|||+.|+..+ ....|++||+.+++....... ...+...+|+|-.
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC---CCcccCceecCCC
Confidence 789999999887654 245799999988776544432 2345678888743
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=3.6e-10 Score=126.66 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=144.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcC---CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--e
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V 488 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~ 488 (954)
+..+...+.+.+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34466778999999999999988654 479999998875432 3445566778999999996 344555544 6
Q ss_pred EEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CC--eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCE
Q 002196 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (954)
Q Consensus 489 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 565 (954)
|++||+.++... .+..+........|++++ +.|+..+. ++ .|.++|+.+.+. ..+...........|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998877643 344444444556777644 66665554 33 577778775543 333334556778899999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCceeEEEecCCCC
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGL 642 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 642 (954)
++.+..+. +...|.+||+.++.... +.... ......|+|+++.|+..+.++ .+++.+.. +.....+..+ .
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~ 408 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLG--N 408 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCC--C
Confidence 99887543 35579999998865432 22221 234568999999988877543 45666643 4444444432 2
Q ss_pred CCcceEEE
Q 002196 643 QASPCIRF 650 (954)
Q Consensus 643 ~~v~~v~~ 650 (954)
..+..++|
T Consensus 409 g~~~~~~w 416 (417)
T TIGR02800 409 GDVREPAW 416 (417)
T ss_pred CCcCCCCC
Confidence 23444444
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=1.4e-10 Score=112.35 Aligned_cols=164 Identities=17% Similarity=0.306 Sum_probs=114.0
Q ss_pred eEEEEEccCCCEEEEEEc----------CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 421 VNRVMWSPDGTLFGVAYS----------KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 421 V~~l~~spdg~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
=..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+++.++.|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999998876533 1346667664432222111222 34579999999999976566677788999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecC---CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
+||++ ++.+..+. ...++.+.|+|.+ +++++++.+ |.+.+||.++.+...... ...+..++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEE
Confidence 99986 66777664 5677889998876 788888754 679999999655554433 34578999999999999
Q ss_pred EEEeC--CCCceEEEEEeCCCCeEEEEE
Q 002196 568 SCGTN--KEGESYLVEWNESEGAVKRTY 593 (954)
Q Consensus 568 ~~~~~--~~~~~~i~iwd~~~~~~~~~~ 593 (954)
++... ...+..+++|+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 98753 1123447888874 6555443
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.3e-10 Score=126.88 Aligned_cols=226 Identities=12% Similarity=0.103 Sum_probs=143.6
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEEEcC--CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 350 ~~~~~h~~~V~~~~~sp~g~~ll~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.....+...+...+|||||+.++++...+ ..|.+||+.+++... +....+.+...+||
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~S 251 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWS 251 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEEC
Confidence 34446778899999999999766655443 369999998886543 12223445578999
Q ss_pred cCCCEEEEE-EcCC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEE
Q 002196 428 PDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYI 502 (954)
Q Consensus 428 pdg~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~ 502 (954)
|||+.|+.. +.+| .|.+||+.+++.. .+..+........|+|||+.+ +++...++ .|+++|+.+++....
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEEe
Confidence 999988754 4444 6888899887543 244555567778999999963 44444443 688888888775432
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEec-CC--eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEE
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 579 (954)
.. .........|+|++ +.++..+. ++ .|.+||+.++....... ........|+|||+.++..+..+ +...+
T Consensus 327 t~-~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~-g~~~l 400 (430)
T PRK00178 327 TF-VGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQ-GRGVL 400 (430)
T ss_pred ec-CCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecC-CceEE
Confidence 21 12222345666655 56666554 33 47888988765433222 22223568999999998877543 35568
Q ss_pred EEEeCCCCeEEEEEecCCCCCeEEEEEeC
Q 002196 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 608 (954)
.+++... .....+....+ .+...+|+|
T Consensus 401 ~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 401 MLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 8888753 33344443322 455566665
No 260
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=1.5e-10 Score=112.14 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=112.2
Q ss_pred EEEEEecCCCceEEEEEcC--------CCeEEEEECC-CCceEEEecc-CCCCeEEEeeeccCCccEEEEEecCCeEEEE
Q 002196 467 NDLAFSYPNKQLSVVTCGE--------DRVIKVWDAV-TGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (954)
Q Consensus 467 ~~~~~s~~~~~~~l~s~~~--------dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 536 (954)
..+.|+|+|+.+++.+... -+...+|.++ .+.....+.- ..++|.+++|+|+++.-.++.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4578999998743333311 1234455442 2233444432 3457999999998752223445567899999
Q ss_pred eCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEE
Q 002196 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 616 (954)
Q Consensus 537 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 616 (954)
|++ ...... .....++.+.|+|+|+++++++.+. ..+.+.+||.++.+.+...... .+..++|+|+|++++++
T Consensus 89 d~~-~~~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~~~~~i~~~~~~---~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFS--FGTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVRKKKKISTFEHS---DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEe--ecCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECCCCEEeeccccC---cEEEEEEcCCCCEEEEE
Confidence 996 333333 3456788999999999999988643 2456999999988888776532 57889999999999998
Q ss_pred EC------CCeEEEEECCCCceeEEEe
Q 002196 617 GD------EFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 617 ~~------dg~i~iwd~~~~~~~~~~~ 637 (954)
.. |+.++||+.. |+.+....
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEecc
Confidence 73 7889999984 66665543
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.2e-10 Score=126.11 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=139.7
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
..+...+.+..|||||++++.+...++ .|++||+.+++.... ....+.....+|||||
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSPDG 273 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECCCC
Confidence 446678999999999997766655444 588899988764321 1112234468999999
Q ss_pred CEEEEE-EcCCE--EEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEecc
Q 002196 431 TLFGVA-YSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 431 ~~l~s~-~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~ 505 (954)
+.|+.. +.+|. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|+++|+.+++..... .
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLT-F 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEe-c
Confidence 988764 55664 777788776533 34445556778899999996 344444444 5777788777654322 1
Q ss_pred CCCCeEEEeeeccCCccEEEEEec-CCe--EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 506 HESPVYSICPHHKENIQFIFSTAT-DGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
........+|+|++ ++++..+. ++. |.++|+.++..... .. ........|+|||+.|+..... .+...++++
T Consensus 348 ~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~-~~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQVL-TS-TRLDESPSVAPNGTMVIYSTTY-QGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEEc-cC-CCCCCCceECCCCCEEEEEEec-CCceEEEEE
Confidence 22223345677665 56655544 443 55567766543322 21 1122345799999999887654 345568888
Q ss_pred eCCCCeEEEEEecCCCCCeEEEEEeC
Q 002196 583 NESEGAVKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 583 d~~~~~~~~~~~~~~~~~i~~~~~~~ 608 (954)
+. +|.....+..+.+ .+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCCC-CcCCCccCC
Confidence 86 4655565655433 556667776
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.7e-10 Score=115.38 Aligned_cols=310 Identities=13% Similarity=0.209 Sum_probs=188.1
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC-----------CCe
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-----------EFM 621 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~ 621 (954)
.-+-+.|||.|.+|++-...| |.+|--.+...++.|. |. .+.-+.|||..++|++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~-Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFY-HP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhcc-CC--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 456789999999999987543 8999876666555554 22 5888999999999999652 257
Q ss_pred EEEEECCCCceeEEEecCCCCC-CcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCC
Q 002196 622 IKFWDMDNVNLLASIDADGGLQ-ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (954)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 700 (954)
++|||+.+|.....+....... .-.-+.||.|++++|.-..+ .|.||+..+- ..+...+-.+..+
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf----~lld~Kslki~gI--------- 349 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF----MLLDKKSLKISGI--------- 349 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce----eeecccccCCccc---------
Confidence 9999999999988887632222 23457899999999987764 7889987552 2222222111111
Q ss_pred ccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCC-------C
Q 002196 701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD-------N 773 (954)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~-------~ 773 (954)
... .++|.+..++ .|.-.+...+.....+..|. +
T Consensus 350 -------r~F-----------------------swsP~~~llA---------Ywtpe~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 350 -------RDF-----------------------SWSPTSNLLA---------YWTPETNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred -------cCc-----------------------ccCCCcceEE---------EEcccccCCcceEEEEecCccceeeecc
Confidence 100 1111121111 22221111111111111111 0
Q ss_pred CCccceEEEEEecCCceEEEeecC----------CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCC
Q 002196 774 LTAMRVSRLIYTNSGLAILALASN----------AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPE 843 (954)
Q Consensus 774 ~~~~~v~~~~~spdg~~l~~~~~d----------g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 843 (954)
.+...-..+.|-.+|.+|++--+- ..+.|+.+ .....-...+. -.
T Consensus 391 lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri----------------------reKdIpve~ve---lk 445 (698)
T KOG2314|consen 391 LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI----------------------REKDIPVEVVE---LK 445 (698)
T ss_pred ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe----------------------eccCCCceeee---cc
Confidence 111222345677778877653321 11222222 22111110011 45
Q ss_pred CCccEEEeccCCCeEEEec----CCeEEEEEccc----ccEEEeeCCCCCCeeEEEecCCCCceEEEEe---cCccEEEE
Q 002196 844 DAVPCFALSKNDSYVMSAS----GGKISLFNMMT----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGM---EDSSIQIY 912 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~s----dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs---~dg~i~iw 912 (954)
..|...+|-|.|..+++-+ ..++.+|.+.+ .+.+..+. ....+.+.||| .|++++.+. ..|.+.++
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSP-KGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcC-CCcEEEEEEecccccceEEE
Confidence 6788999999999888665 25689998763 23344444 34578999999 899888764 56899999
Q ss_pred eccccceEEEec-CCccceeEEEEecCCCeEEEecCCccee
Q 002196 913 NVRVDEVKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 913 d~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
|..-..+..+-. .| ...+.+.|.|.|+|++|++.-...+
T Consensus 523 D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 523 DTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred ecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhc
Confidence 988544443322 34 4467899999999999998866544
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=1.4e-08 Score=105.73 Aligned_cols=281 Identities=9% Similarity=0.003 Sum_probs=172.4
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC----------CCeEEEEECCCCceeEEEecCCC-----
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLASIDADGG----- 641 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~----- 641 (954)
+.+.+.|..+++.+..+..... ...+ ++||++.++++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 4599999999999998886544 2334 9999998888765 78999999999999999875422
Q ss_pred CCCcceEEECCCCCEEEEEe-C-CCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccc
Q 002196 642 LQASPCIRFNKEGILLAVST-N-DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (954)
...-..++++|||++|++.. . +..|.+.|+.++ +.+..+.-......-. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~vp~~~~vy~-t~------------------------- 156 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMMDVPDCYHIFP-TA------------------------- 156 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEEeCCCCcEEEE-ec-------------------------
Confidence 12234789999999988765 3 689999999998 6666554322110000 00
Q ss_pred ccccccccccCCCCCCCCCCcccc-cccccccccccccccccCCCceeEEecCCCCCccceEEEEEec-CCceEEEeecC
Q 002196 720 TAPAAAMVGMSNDSRNFTDVKPKI-ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN-SGLAILALASN 797 (954)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~lv-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~d 797 (954)
..... ..+.|+..+. +-+.+|+...=... ....-..+. ...+ .|++ ||+++.+..+
T Consensus 157 ---e~~~~------~~~~Dg~~~~v~~d~~g~~~~~~~~------vf~~~~~~v--~~rP----~~~~~dg~~~~vs~e- 214 (352)
T TIGR02658 157 ---NDTFF------MHCRDGSLAKVGYGTKGNPKIKPTE------VFHPEDEYL--INHP----AYSNKSGRLVWPTYT- 214 (352)
T ss_pred ---CCccE------EEeecCceEEEEecCCCceEEeeee------eecCCcccc--ccCC----ceEcCCCcEEEEecC-
Confidence 00000 0012222221 22222221100000 000000000 0111 4566 8888877777
Q ss_pred CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-----------CCeE
Q 002196 798 AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-----------GGKI 866 (954)
Q Consensus 798 g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-----------dg~i 866 (954)
|.|.+-|+....... ...|..-+-.....-. ....+.-++++||++++.+.. .+.|
T Consensus 215 G~V~~id~~~~~~~~---------~~~~~~~~~~~~~~~w----rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 215 GKIFQIDLSSGDAKF---------LPAIEAFTEAEKADGW----RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred CeEEEEecCCCccee---------cceeeecccccccccc----CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 999998865321110 1112111100000000 223344489999999888742 2579
Q ss_pred EEEEcccccEEEeeCCCCCCeeEEEecCCCCc-eEEEEe-cCccEEEEeccccceEEEec
Q 002196 867 SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN-IIAIGM-EDSSIQIYNVRVDEVKTKLK 924 (954)
Q Consensus 867 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~-~lasgs-~dg~i~iwd~~~~~~~~~~~ 924 (954)
.++|..+++.+..+.. ...+..++++| |++ +|++.. .++.|.+.|..+++.+.++.
T Consensus 282 ~ViD~~t~kvi~~i~v-G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 282 FVVDAKTGKRLRKIEL-GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEECCCCeEEEEEeC-CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9999999999998873 45789999999 888 777665 57889999999999999883
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=7.9e-09 Score=105.01 Aligned_cols=230 Identities=10% Similarity=0.071 Sum_probs=162.8
Q ss_pred EcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCcccc-ccccCCCCCCeEEEE-Ecc-CCCEEEEEEcCC
Q 002196 364 FHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQ-ASLSSDYTASVNRVM-WSP-DGTLFGVAYSKH 440 (954)
Q Consensus 364 ~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~-~sp-dg~~l~s~~~dg 440 (954)
.+.||++++.. ..|.|.+||..+.+...- |+.. ++. .......-.+..-+. |++ +|.+++..|. |
T Consensus 274 ~nsDGkrIvFq--~~GdIylydP~td~lekl------dI~l---pl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-G 341 (668)
T COG4946 274 ANSDGKRIVFQ--NAGDIYLYDPETDSLEKL------DIGL---PLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-G 341 (668)
T ss_pred cCCCCcEEEEe--cCCcEEEeCCCcCcceee------ecCC---ccccccccccccCHHHhhhhhccCCCcEEEEEec-C
Confidence 45689987764 567899999988765431 1110 000 000011112333333 555 7899998876 4
Q ss_pred EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC-eEEEEECCCCceEEEeccCCCCeEEEeeeccC
Q 002196 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-VIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 519 (954)
...|.+...+-.++ -+|.+.|.-..+.-+++ -++.|..|| .+-|+|..+++. ..+...-+.|.++..++++
T Consensus 342 kaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 342 KAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred cEEEECCCCCeeEE-----cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCC
Confidence 56666655554332 35778899999988888 589999999 899999877764 4455567889999887665
Q ss_pred CccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCC
Q 002196 520 NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599 (954)
Q Consensus 520 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 599 (954)
++++.+.....+.+.|++++.....-....+-|+.+.|+|++++++.+-.++--...|+++|+..++....-... .
T Consensus 414 --K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-a- 489 (668)
T COG4946 414 --KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-A- 489 (668)
T ss_pred --cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-c-
Confidence 789999888999999999988877777777789999999999999998766655667999999988776543322 1
Q ss_pred CeEEEEEeCCCCEEEEEE
Q 002196 600 SVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~ 617 (954)
.=.+-+|.|++++|..-+
T Consensus 490 ~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccCcccCCCCcEEEEEe
Confidence 224567999999887655
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6e-10 Score=122.79 Aligned_cols=227 Identities=11% Similarity=0.090 Sum_probs=141.4
Q ss_pred CCCCeeEEEEcCCCCeE--EEEEEcCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 355 QGSAVKSMDFHPVQQIL--LVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~l--l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
....+.+-+|||||+.+ +++...+| .|.+.++.+++... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 45567788999999863 33544443 68888888876543 22234455678999999
Q ss_pred CEEEEEEc-----CCEEEEEEeeCCc--ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE--ECCC-CceE
Q 002196 431 TLFGVAYS-----KHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW--DAVT-GTKQ 500 (954)
Q Consensus 431 ~~l~s~~~-----dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw--d~~~-~~~~ 500 (954)
+.||..+. +..+.+|++..+. .... ....+.+.....+|+|||+.+ +++...+|...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~L-af~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTRL-VFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECcccccce
Confidence 99987653 2234457776532 1121 122223345678999999962 4444456654454 5442 3334
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecC---CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
..+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..... .+..
T Consensus 320 ~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~-~g~~ 395 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN-SNES 395 (428)
T ss_pred EEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC-CCCc
Confidence 4455455566777888766 666655443 36899999876654333 223456789999999998876543 3356
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 610 (954)
.|+++|+.+++....... .. .+...+|+|-.
T Consensus 396 ~L~~vdl~~g~~~~Lt~~-~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIVIG-SG-EKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEeecC-CC-cccCceecCCC
Confidence 799999988766544432 22 45567787643
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=4.8e-08 Score=97.24 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=176.0
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEc--CCeEEEEeCCC--CceeeeeeeEEEeccCCCccccccccCCCCCCeEE
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGS--RERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~--dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (954)
..+....+.+.++-++|+|+++.|.+.... +|.|..|.++. |+....... ...+ .+-+.
T Consensus 31 ~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------------~~~g--~~p~y 93 (346)
T COG2706 31 SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------------TLPG--SPPCY 93 (346)
T ss_pred chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc---------------ccCC--CCCeE
Confidence 344556678899999999999955544444 57788777765 554432111 1222 33488
Q ss_pred EEEccCCCEEEEEEc-CCEEEEEEeeCCcceeeeeeeecccCC----------EEEEEEecCCCceEEEEEc-CCCeEEE
Q 002196 424 VMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGS----------VNDLAFSYPNKQLSVVTCG-EDRVIKV 491 (954)
Q Consensus 424 l~~spdg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~----------v~~~~~s~~~~~~~l~s~~-~dg~i~i 491 (954)
++++++|++|+++.. .|.|.++-+.....+........|.+. +.+..|.|+++. +++.. .--.|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~--l~v~DLG~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY--LVVPDLGTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE--EEEeecCCceEEE
Confidence 999999999998865 578999999663333333234456666 899999999994 44433 3348999
Q ss_pred EECCCCceEEEec---cCCCCeEEEeeeccCCccEEEEEe-cCCeEEEEeCCCCCcee-EeeC---------CCCceEEE
Q 002196 492 WDAVTGTKQYIFE---GHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGSRV-DYDA---------PGHSSTMM 557 (954)
Q Consensus 492 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~-~~~~---------~~~~v~~~ 557 (954)
|++..|+....-. .....-..|.|+|++ ++....+ .+++|.+|.++...... .+.. ...+...+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 9999876543211 234456789999877 5665554 48999999988752221 1111 12367889
Q ss_pred EECCCCCEEEEEEeCCCCceEEEEEeC--CCCeEEEEE-ecCCCCCeEEEEEeCCCCEEEEEECC-CeEEEEECC--CCc
Q 002196 558 AYSADGARLFSCGTNKEGESYLVEWNE--SEGAVKRTY-HGLGKRSVGVVQFDTTKNRFLAAGDE-FMIKFWDMD--NVN 631 (954)
Q Consensus 558 ~~s~~g~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~ 631 (954)
.+++||++|+++... ...|.+|.+ .++++...- ....+...+...|++.+++|+++..+ ..|.+|... +|+
T Consensus 250 his~dGrFLYasNRg---~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 250 HISPDGRFLYASNRG---HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EECCCCCEEEEecCC---CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 999999999987543 224666654 445432211 11122246788999999999999843 467787664 444
Q ss_pred eeEEEecCCCCCCcceEEEC
Q 002196 632 LLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s 651 (954)
+-..... .......|+.|.
T Consensus 327 L~~~~~~-~~~p~Pvcv~f~ 345 (346)
T COG2706 327 LTLLGRY-AVVPEPVCVKFL 345 (346)
T ss_pred EEecccc-cCCCCcEEEEEc
Confidence 3332221 112234566653
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.29 E-value=1.5e-08 Score=105.46 Aligned_cols=265 Identities=14% Similarity=0.146 Sum_probs=167.7
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc----------CCEEEEEEee
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----------KHIVHLYTYH 448 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~----------dg~i~iwd~~ 448 (954)
++|.+.|..+++.+.... .+.... .+ +||||+.|+++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 889999999988776421 122112 24 9999998887755 7899999999
Q ss_pred CCcceeeeeeeec-----ccCCEEEEEEecCCCceEEEEE--cCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCc
Q 002196 449 GGDELRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTC--GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521 (954)
Q Consensus 449 ~~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 521 (954)
+.+.+..+. +.. .......++++|||+. ++.. +.+..|-+.|+.+++.+.++.-.. ...-.. .++.
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~---t~e~ 158 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP---TAND 158 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE---ecCC
Confidence 988776332 111 1223457899999995 4433 348999999999999998887422 111111 1111
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeE-----eeCCCCce-EEEEECC-CCCEEEEEEeCCCCceEEEEEeCCCC-----eE
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVD-----YDAPGHSS-TMMAYSA-DGARLFSCGTNKEGESYLVEWNESEG-----AV 589 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~-----~~ 589 (954)
. ...-+.||......++..+.... +......+ ..-.|++ +|+++++... +.|.+.|+... ..
T Consensus 159 ~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 159 T-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred c-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecce
Confidence 2 22344566655544443332211 11100000 0013455 8888877653 45899995432 22
Q ss_pred EEEEecC------CCCCeEEEEEeCCCCEEEEEE----------CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 590 KRTYHGL------GKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 590 ~~~~~~~------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
...+... ....+.-++++++++.+++.. ..+.|.++|..+++.+..+... ..+..++++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCC
Confidence 2222111 111334489999999888743 2258999999999999998753 26789999999
Q ss_pred CC-EEEEEe-CCCcEEEEEccCCCeeEEEe
Q 002196 654 GI-LLAVST-NDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 654 ~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~ 681 (954)
++ +|++.. .++.|.++|..++ +.++.+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 99 777665 5788999999998 666655
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=1.3e-09 Score=122.21 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=138.9
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEEEcC--CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 351 MTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~ll~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
....+...+.+.+|||||++++++...+ ..|++||+.+++... +..+...+.+++|+|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFSP 243 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 3345667899999999999665554333 479999998876443 223445677799999
Q ss_pred CCCEEEEE-EcCC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEe
Q 002196 429 DGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIF 503 (954)
Q Consensus 429 dg~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 503 (954)
||+.|+.. +.++ .|++|++.++... .+..+........|+|||++ ++++...++ .|++||+.+++.. .+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~-l~~~s~~~g~~~iy~~d~~~~~~~-~l 317 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS-IAFTSDRGGSPQIYMMDADGGEVR-RL 317 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCEE-Ee
Confidence 99988754 4343 5888888876533 24445555667899999995 233443333 6888898777643 34
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCC---eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
..+...+....|++++ ++++.++.++ .|.+||+.+..... +.. ........|+|+|+.|+....++ +...+.
T Consensus 318 ~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~-~~~~l~ 392 (417)
T TIGR02800 318 TFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRG-GRGVLG 392 (417)
T ss_pred ecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCC-CcEEEE
Confidence 4345556667777655 6777777765 78888887744322 221 22344568999999998887643 344566
Q ss_pred EEeCCCCeEEEEEec
Q 002196 581 EWNESEGAVKRTYHG 595 (954)
Q Consensus 581 iwd~~~~~~~~~~~~ 595 (954)
+.+.. +.....+..
T Consensus 393 ~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 393 LVSTD-GRFRARLPL 406 (417)
T ss_pred EEECC-CceeeECCC
Confidence 66643 444444443
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=6.3e-10 Score=108.51 Aligned_cols=248 Identities=11% Similarity=0.163 Sum_probs=173.5
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEe-eCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
.++||.+.|+....-|-..-+++.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 47889999999999998888999999999999954 344433211 122456789999999888 5899999999998
Q ss_pred EECC----CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEE
Q 002196 492 WDAV----TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 492 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
+.+. .-..++....|...|..+.|+... ..+++.+.|..+.---.+.+...-.+.... ..+.+.+.-. +.+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQFDAL--YAF 169 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeec-cCCCCceeeE--EEE
Confidence 8654 334566677899999999988766 789999998877433223222211111000 0001111100 122
Q ss_pred EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee-EEEecCCCCCCcc
Q 002196 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL-ASIDADGGLQASP 646 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~ 646 (954)
.+ +..+..++.-.....-.++.++.+|.. .+.+++|.+....+.+|..|..+.+||+...+-+ ..+. ++...|.
T Consensus 170 vG--d~~gqvt~lr~~~~~~~~i~~~~~h~~-~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~--gh~~kV~ 244 (404)
T KOG1409|consen 170 VG--DHSGQITMLKLEQNGCQLITTFNGHTG-EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ--GHNDKVQ 244 (404)
T ss_pred ec--ccccceEEEEEeecCCceEEEEcCccc-ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec--cchhhhh
Confidence 22 122233344445566678888999887 9999999999999999999999999999754433 3333 4456788
Q ss_pred eEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 647 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.+...+--+.+.+++.||.|.+|+.+..
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccce
Confidence 8888888889999999999999998764
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=7.6e-10 Score=116.21 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=154.6
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEe------c------------CCCceEEEEEcCCCe
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------Y------------PNKQLSVVTCGEDRV 488 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~------------~~~~~~l~s~~~dg~ 488 (954)
.|-..++|....||.++||+...++....+.....-.+..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999999887554333222334455555553 1 122337888999999
Q ss_pred EEEEECCCCceEEEec--cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 489 IKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 489 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
|.+|++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888876 589999999876554 689999999999999999888888888888899999999999999
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCC-----CCEEEEEE-CCCeEEEEECCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-----KNRFLAAG-DEFMIKFWDMDN 629 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 629 (954)
++++. .|.+||+++++.+..|.+|.. +|+++.|.-+ |.+++++. .+..+.+|-+..
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98863 499999999999999999988 9999999876 67777654 556677776554
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=4.4e-10 Score=107.26 Aligned_cols=253 Identities=17% Similarity=0.083 Sum_probs=165.4
Q ss_pred CCCCeeEEEEcC---CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC
Q 002196 355 QGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 355 h~~~V~~~~~sp---~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (954)
.+..+..+.|.- +|...++-+...|.|.++.......... ++ ++.. ..-......++.|++.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCc
Confidence 345566677753 4444566777788898887654332211 00 0000 000011356788999999
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC-CCceEEE-eccCCCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYI-FEGHESP 509 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~-~~~~~~~ 509 (954)
.++++-.+|.+.+-+..... +......+.|.-+.+...|+....+ ++.+||.|+.+..||++ .++.+.. -+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999998855544332 3333467889999999999988777 69999999999999998 4455544 5568999
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCC--EEEEEEeCCCCceEEEEEeCCCC
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
|.+|.-++. .+.+++||+.|-.|++||.++......-..-++.|..+.++|.-. .++++-.+| .++-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence 999987764 347999999999999999998776665555567899999998543 344443333 455554433
Q ss_pred --e---EEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEE-EEECCC
Q 002196 588 --A---VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIK-FWDMDN 629 (954)
Q Consensus 588 --~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~ 629 (954)
+ .......|.. -+..-.|.....++++++ .|..++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence 2 2223334433 344444533345688876 666644 665433
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.26 E-value=2.3e-07 Score=110.63 Aligned_cols=247 Identities=10% Similarity=0.143 Sum_probs=157.4
Q ss_pred CCeEEEEEccCCCEEEEEEcCC----EEEEEEeeCCcceeeeeeee-----cccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKH----IVHLYTYHGGDELRNHLEIE-----AHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
..+...+|.+..+.+.++.... .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 4677778888665554443322 23444333322122222232 2346799999999998 47788888999
Q ss_pred EEE----ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC---------------C--------CC
Q 002196 490 KVW----DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD---------------N--------LG 542 (954)
Q Consensus 490 ~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---------------~--------~~ 542 (954)
.+. |..+... .....-...|.+++|+|+. ..++..+.++++.+.+-+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 998 5443322 2222245779999999887 688888888887765311 0 00
Q ss_pred ceeEeeC------------------------CCCceEEEEECCCCCEEEEEEeCCC-C-ceEEEEEeCCCCeEEEEEecC
Q 002196 543 SRVDYDA------------------------PGHSSTMMAYSADGARLFSCGTNKE-G-ESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 543 ~~~~~~~------------------------~~~~v~~~~~s~~g~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~ 596 (954)
....+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-+ |.+..+-..-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0000000 1124467889999999999886333 2 5789999954 7765554433
Q ss_pred CCCCeEEEEEeCCCCEEEEEEC---CCeEEEEECCCCceeEEEecC--CCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 597 GKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLASIDAD--GGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
.+ --..++|-|.|++|++... ...|.+|.. +|-.-..+... .....|..+.|++|+.+||....|. |.+|-.
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 32 3456899999999998763 346777764 44444444332 2345789999999999999987664 999988
Q ss_pred cCC
Q 002196 672 ADG 674 (954)
Q Consensus 672 ~~~ 674 (954)
.+.
T Consensus 333 ~NY 335 (928)
T PF04762_consen 333 SNY 335 (928)
T ss_pred eCC
Confidence 775
No 273
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.25 E-value=7.4e-11 Score=110.55 Aligned_cols=168 Identities=19% Similarity=0.284 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc---------HHHHHHHHhcccHHHHHHHHccCC--CcCCCccchh
Q 002196 3 SLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---------MRYFEDMVTNGEWDEVEKYLSGFT--KVDDNRYSMK 71 (954)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (954)
....|+.+||+.||-..||.++|..+.+|+|+..+ -..++.+|..|+-++|+..+.++. .++.+ ..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---RE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hh
Confidence 45789999999999999999999999999999872 356899999999999999999982 22222 24
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccccchhhcccCC--ChhHHHHHHHHHHh
Q 002196 72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD--TKSARGIMLAELKK 149 (954)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~ 149 (954)
+.|.+++|+++|++..+...+|+.|+|.++.|+...+++.++.|...+..--++.....+ ... ....|.++.+.+..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999887888888888766653333111100 111 23458888888777
Q ss_pred hcccCccccccccCCCCchHHHHHHHHHHHHHH
Q 002196 150 LIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQ 182 (954)
Q Consensus 150 ~~~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q 182 (954)
.|-...- . -...+|..|+...+..|
T Consensus 180 aiL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 180 AILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 6543110 0 12457888885555555
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=8.5e-09 Score=113.46 Aligned_cols=302 Identities=11% Similarity=0.032 Sum_probs=180.5
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCe
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i 601 (954)
..+++++.+|.+..+|..+++................. ++..+++++. ++.+..+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 57888888999999998888777665544432222222 4566776654 3459999999999887765432 22
Q ss_pred EE-EEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCC---cceEEECCCCCEEEEEeCCCcEEEEEccCCCee
Q 002196 602 GV-VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (954)
Q Consensus 602 ~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 677 (954)
.+ ... .+..++.++.+|.|+.||.++|+.+........... ..+... .+..++.+..+|.+..+|..+|...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 22 122 245777788899999999999998887764321100 011111 1246777888899999999888432
Q ss_pred EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 002196 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (954)
Q Consensus 678 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~ 757 (954)
.. ...... . + .. ..-++.+.
T Consensus 214 W~-~~~~~~---------------------------------------------~------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 WE-QRVALP---------------------------------------------K------G------RT-ELERLVDV- 233 (377)
T ss_pred ee-eccccC---------------------------------------------C------C------CC-chhhhhcc-
Confidence 21 110000 0 0 00 00000000
Q ss_pred cccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccC
Q 002196 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 837 (954)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~ 837 (954)
...+ .+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 -----------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------- 270 (377)
T TIGR03300 234 -----------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------- 270 (377)
T ss_pred -----------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC-------
Confidence 0001 11 13457777778888888754321 13322210
Q ss_pred CCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCC-CCeeEEEecCCCCceEEEEecCccEEEEecc
Q 002196 838 SDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 838 ~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~ 915 (954)
.....+ .++..++.++ +|.+..+|..+|+.+....... ........ .+..|++++.+|.|+++|..
T Consensus 271 -------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 -------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 011112 2455666666 8999999999999887663222 22233333 24478889999999999999
Q ss_pred ccceEEEecCCcccee-EEEEecCCCeEEEecCCccee
Q 002196 916 VDEVKTKLKGHQKRIT-GLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 916 ~~~~~~~~~~h~~~V~-~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
+|+.+.++..+...+. +..+. ++ .|+.++.||.|.
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~ 374 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLY 374 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEE
Confidence 9999999886665433 33333 44 488899999774
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=1.7e-09 Score=105.54 Aligned_cols=244 Identities=13% Similarity=0.232 Sum_probs=169.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
|.+.|+....-|... =+.+.+.|.+++||--.+... +-+.+......+++++.++++...|+
T Consensus 23 ~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q-----------------~wpsI~~~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQ-----------------YWPSIYHYMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred chhhhhhheeccCCC-CeEEccccceeeeEEeccccc-----------------cCchhhhhCCCCceEeeeeccceEEE
Confidence 677888888888776 467889999999997443211 12223445678999999999999999
Q ss_pred EEEcCCEEEEEEeeCC-cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
+|-..|++.-+.+... ...........|...|..+.|+.... .+++.+.|..+.---.+.+..+..+.- ...-.++
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e--~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~ 161 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE--WVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASAL 161 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce--eEEEeccccceEEEeeccCCcccceEe-eccCCCC
Confidence 9999999988866431 11111224667999999999998887 689999998876555555554432210 0001111
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCC--CCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe-EE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VK 590 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~ 590 (954)
.+.. .+...|...|.|..-.+. .......+..+...+.+++|.+..+.|+++..+. .+.+||+.-.+ ..
T Consensus 162 ~~d~----~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~----~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 162 QFDA----LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH----SVIMWDIGGRKGTA 233 (404)
T ss_pred ceee----EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC----ceEEEeccCCccee
Confidence 1110 144455555665554433 3345566778888999999999999999988654 49999987654 33
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
..+.+|.. .+..++..+--+.++++++||.|.+|+++
T Consensus 234 ~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 234 YELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 45566665 78887777777899999999999999986
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=5.1e-09 Score=110.13 Aligned_cols=190 Identities=15% Similarity=0.279 Sum_probs=147.7
Q ss_pred eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE--------------------ccC
Q 002196 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW--------------------SPD 429 (954)
Q Consensus 370 ~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--------------------spd 429 (954)
.++|....||.++||++..++...... + ...-++..++..| +.|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~-----------p-----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFA-----------P-----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeec-----------c-----chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 378888999999999999988765410 0 0011233333333 223
Q ss_pred CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCC
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 509 (954)
...++-|...|.|.+|++..|+..... .-..|.+.|.++.++.+-. +|.+++.|+.+..|+..+++.++.+......
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 446778888999999999998865432 3457999999999998877 7999999999999999999999999999999
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCC-----CCEEEEEEeCCCCceEEEEEeC
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD-----GARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
+.++++++++ ..+++++ +.|++||+++.+....+.+|.++|+++.|.-+ |.+++++..- +..+.+|-.
T Consensus 147 ~~sl~is~D~--~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~---~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPDG--KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA---ERGITVWVV 219 (541)
T ss_pred cceEEEcCCC--CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc---ccceeEEEE
Confidence 9999998774 7888876 68999999999999999999999999999876 7777775432 223566644
Q ss_pred C
Q 002196 585 S 585 (954)
Q Consensus 585 ~ 585 (954)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 3
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=5.5e-08 Score=107.05 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=116.3
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
.+++++.++.|..+|..+|+.+..+............ ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 4888889999999999999988776544322222222 235788888999999999988887766554332111111
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCe-----EEEEEeCCCCEEEEEECCCeEEEEECCCCcee
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-----GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
. .+..++.+.. ++.++.||.++|+.+..+..... .. .+.... +..++.+..+|.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 2345555543 34599999999998877654322 11 111222 347788888999999999999887
Q ss_pred EEEecCCCC--CCc---ceEEECC--CCCEEEEEeCCCcEEEEEccCC
Q 002196 634 ASIDADGGL--QAS---PCIRFNK--EGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 634 ~~~~~~~~~--~~v---~~v~~s~--~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
......... ..+ ..+.-+| .+..+++++.+|.++.||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 655321100 000 0111111 3457777888999999999887
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=2.2e-09 Score=114.67 Aligned_cols=280 Identities=16% Similarity=0.248 Sum_probs=186.3
Q ss_pred eeeeeCCCCCcceeecCCCC-------CcceEEEecCC--CCeeEEEEcCCCCe-EEEEEEcCCeEEEEeCCCCceeeee
Q 002196 326 LPVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQG--SAVKSMDFHPVQQI-LLVVGTNMGDVMLWEVGSRERIAVK 395 (954)
Q Consensus 326 ~~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~h~--~~V~~~~~sp~g~~-ll~~g~~dg~i~iwd~~~~~~~~~~ 395 (954)
.++..+|.|+-+|.++.-++ +...-+-+.|- -.|-.+.|||.-.+ +-++......-.+|++....-.
T Consensus 28 ~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~--- 104 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN--- 104 (1081)
T ss_pred cceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc---
Confidence 35667888887777655443 44444555553 35778888885421 2233344455667776543322
Q ss_pred eeEEEeccCCCccccccccCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC
Q 002196 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474 (954)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 474 (954)
...-++.+|+.+|+.+.|.|. -..+++++.|..+..||+.+... .......-......++|+-.
T Consensus 105 -------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk 169 (1081)
T KOG0309|consen 105 -------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYK 169 (1081)
T ss_pred -------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeeccc
Confidence 222347899999999999995 56889999999999999987542 22234444456778999987
Q ss_pred CCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC-CCC
Q 002196 475 NKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGH 552 (954)
Q Consensus 475 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~ 552 (954)
.. .+.+.+..+.|++||.+.| .++..+++|...|+.+.|...-. ..+.+++.||+|+.||.+.......... ...
T Consensus 170 ~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~ 246 (1081)
T KOG0309|consen 170 DP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF 246 (1081)
T ss_pred Cc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccC
Confidence 76 3667777889999999876 46788999999999998865443 4789999999999999986654443322 234
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEE---------EeCCC-CeEEEEEecCCCCCeEEEEEeC--------C--CCE
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVE---------WNESE-GAVKRTYHGLGKRSVGVVQFDT--------T--KNR 612 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~i~~~~~~~--------~--~~~ 612 (954)
++..-.+.|-|.-.+.--..| ...+.+ |+..+ .+++..|.+|.+ .|....|-. + .-.
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred cceeccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcccee
Confidence 666667777655433322222 122333 33333 367889999977 443332321 1 236
Q ss_pred EEEEECCCeEEEEECCC
Q 002196 613 FLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 613 l~~~~~dg~i~iwd~~~ 629 (954)
|++-+.|..+++|-+.+
T Consensus 324 LVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEEeecCCceEeeeccH
Confidence 89999999999998763
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.1e-07 Score=104.18 Aligned_cols=216 Identities=11% Similarity=0.002 Sum_probs=134.3
Q ss_pred cceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEc---CCeEEEEeCCCCceeeeeeeEEEeccCCCcccccc
Q 002196 336 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 412 (954)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (954)
.|+....|...... +...+.+....|||||+++++..+. +..|.++|+.+++...
T Consensus 170 ~l~~~d~dg~~~~~---~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 170 NIVLADYTLTYQKV---IVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred eEEEECCCCCceeE---EccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 46666666553322 2222488899999999864444333 3579999998887543
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEE-cC--CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAY-SK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-- 487 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~-~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-- 487 (954)
+....+.+....|||||+.|+... .+ ..|.++++.+++. + .+..+........|+|||+++++ +....+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F-~Sdr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVF-VSDRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEE-EECCCCCc
Confidence 222445566788999999877543 33 4677788877753 3 23334433445689999997433 433333
Q ss_pred eEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecC---------CeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 488 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 488 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
.|+++|+.+++..+.... ... ...|+|++ +.++..+.. ..|.+.|+.++.... +... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeE
Confidence 688889988876443321 111 23676655 566555543 257778887665433 2222 2334688
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
|+|||+.++..... .+...+.+.++...
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 99999998887654 33556777887543
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.04 E-value=3e-08 Score=95.05 Aligned_cols=271 Identities=13% Similarity=0.113 Sum_probs=169.3
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc---CCC-EEEEEEcCCEEEEEEeeCCccee
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP---DGT-LFGVAYSKHIVHLYTYHGGDELR 454 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg~-~l~s~~~dg~i~iwd~~~~~~~~ 454 (954)
|.+.+|++...+...... +....++.+..+.|.. +|. .++-+-..|.|.++.........
T Consensus 46 Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV 109 (339)
T ss_pred cceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence 567788877665443111 1122446777788875 555 56667788999999876543322
Q ss_pred eeeeeecccC---CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE--EEeccCCCCeEEEeeeccCCccEEEEEec
Q 002196 455 NHLEIEAHVG---SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTAT 529 (954)
Q Consensus 455 ~~~~~~~h~~---~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 529 (954)
....+..-.- ...++.|++.+.. ++++-.+|.+.+-+....... +.++.|..+.+...|+...+ +.+++|+.
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~~~~~--i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgD 186 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDISTSGTK--IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGD 186 (339)
T ss_pred eecccchhhhhheeeeEEEeeccCce--EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCC
Confidence 1112222111 2457889998884 888888999987665555444 47889999999999887665 79999999
Q ss_pred CCeEEEEeCCCCCce-eE-eeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecCCCCCeEEEE
Q 002196 530 DGKIKAWLYDNLGSR-VD-YDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQ 605 (954)
Q Consensus 530 dg~i~iwd~~~~~~~-~~-~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~ 605 (954)
|+.+..||++..+.. .. ...|...|.++.-+| .+.++++|+.|. .|++||.++ ++++..- ..++.|..+.
T Consensus 187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe----~i~~~DtRnm~kPl~~~--~v~GGVWRi~ 260 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE----CIRVLDTRNMGKPLFKA--KVGGGVWRIK 260 (339)
T ss_pred CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc----ceeeeehhcccCccccC--ccccceEEEE
Confidence 999999999954422 22 344566888888776 577888888755 499999984 5555432 2234789999
Q ss_pred EeCCCC-EEEEEECCCeEEEEECCCCcee--EEEecC-CCCCCcceEEECCCCCEEEEEe-CCCcEE-EEEccCC
Q 002196 606 FDTTKN-RFLAAGDEFMIKFWDMDNVNLL--ASIDAD-GGLQASPCIRFNKEGILLAVST-NDNGIK-ILANADG 674 (954)
Q Consensus 606 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~v~~v~~s~~~~~l~s~~-~dg~i~-iwd~~~~ 674 (954)
.+|.-. .++.++.-.-.+|-+...+... ..+..+ .|.+-+..-.|.....+||+++ .|+.++ +|-..++
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 988643 2333333333566666543322 122211 2222334444433335677764 466644 7765554
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=126.91 Aligned_cols=200 Identities=15% Similarity=0.250 Sum_probs=160.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~ 494 (954)
..+-..|.++.=+|...+.++|+.||.|++|....++.+....+. +. ..|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345578888888999999999999999999999988877644332 33 8899999999999 4888999999999996
Q ss_pred CCCceEEEeccCCCCeEEEeeeccCCccEEEEEe---cCCeEEEEeCCCCCc-eeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
. .++....+.|.....+..|-. ..+++++ .++.+.+||...... ......|.+.++++++.|..+.+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 6 667777888988888888765 3466654 467899999654332 233477888999999999999999998
Q ss_pred eCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
.+|. +.+||++..+.++.++. +. ...++++|+..|.++||++..-..+..+..
T Consensus 2356 r~G~----v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGE----VCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcCc----EEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 7554 99999998887766654 33 467899999999999999998777777654
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=6.9e-09 Score=110.97 Aligned_cols=298 Identities=12% Similarity=0.142 Sum_probs=192.8
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeC-CcceeeeeeeecccC--CEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVG--SVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
-.+++..+..+|.|+-+|.++.-| +.+-|+.. +...+ .-.|.. .|-.+.|+|...+-+-++........+|+
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 357888999999999999998888 45566654 22222 222332 47788999876543445555555667898
Q ss_pred CCCC---ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEE
Q 002196 494 AVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 494 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
+... .....+-+|...|+.+-|++... ..+++++.|-.+..||++....... +..-......+.|+...-.+++.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 7643 34556788999999999998765 6999999999999999998765543 33333466778898755444444
Q ss_pred EeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 570 GTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
+..++ |.+||.+.| .++..+++|.. .+..+.|..- ...+.+.+.||+|++||..+........... ..+|..
T Consensus 177 shg~~----i~vwd~r~gs~pl~s~K~~vs-~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~ 250 (1081)
T KOG0309|consen 177 SHGND----IFVWDLRKGSTPLCSLKGHVS-SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWR 250 (1081)
T ss_pred ccCCc----eEEEeccCCCcceEEecccce-eeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCccee
Confidence 44333 999999876 56677777655 7777777542 3568888999999999987643322221111 224444
Q ss_pred EEECCC--CCEEE---------EEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccc
Q 002196 648 IRFNKE--GILLA---------VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSL 716 (954)
Q Consensus 648 v~~s~~--~~~l~---------s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (954)
-.+-|- |.++. ---.+.....|+..++.+.+..+.||.+.|...-.... +
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r---------~---------- 311 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR---------K---------- 311 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc---------c----------
Confidence 455552 22221 11122334457777777889999999887654211110 0
Q ss_pred cccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 717 GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
..++-+-...-.+|+.+.|.++++|.+..
T Consensus 312 -------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 312 -------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 00111112234678999999999998864
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=7.9e-07 Score=108.40 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=160.3
Q ss_pred EEEEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeeee-----------cccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 422 NRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----------AHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 422 ~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
..++++++ ++.+++-+.++.|++||..+. .+....... ++-.....+++.+++.. ++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889885 566666677889999998643 222111100 01123578999998874 34555566789
Q ss_pred EEEECCCCceEEEeccC-----------------CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--
Q 002196 490 KVWDAVTGTKQYIFEGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-- 550 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 550 (954)
+++|..++. +.++.+. -..-..+++++.. +..+++.+.++.|++||..+..... +...
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGVTRV-FSGDGY 725 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCeEEE-EecCCc
Confidence 999987764 3333210 0123567887643 3677777888999999987653321 1110
Q ss_pred -------------CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC------------C--------
Q 002196 551 -------------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------G-------- 597 (954)
Q Consensus 551 -------------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~-------- 597 (954)
......++++|+++.|+++... +..|++||+.++.......+. .
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECC---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 1245679999999977776532 456999999876532111000 0
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC-----------CCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----------GGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
-.....++++++|+.+++-..++.|++||..++......... ........++++++|+++++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 012357889999998888889999999999887655433210 011246789999999999988899999
Q ss_pred EEEEccCC
Q 002196 667 KILANADG 674 (954)
Q Consensus 667 ~iwd~~~~ 674 (954)
++||+.++
T Consensus 883 rvid~~~~ 890 (1057)
T PLN02919 883 RYLDLNKG 890 (1057)
T ss_pred EEEECCCC
Confidence 99999887
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=1.1e-06 Score=107.11 Aligned_cols=259 Identities=12% Similarity=0.142 Sum_probs=160.7
Q ss_pred eEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc-
Q 002196 360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS- 438 (954)
Q Consensus 360 ~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~- 438 (954)
..+++++++..++++-+.++.|.+||........... ..... ......-..+-.....++++++++.|+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-----~g~~G-~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-----TGEEG-LRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-----CCCcC-CCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4688988655577888888999999986432211100 00000 0000000112234678999999887766644
Q ss_pred CCEEEEEEeeCCcceeeeee-------eecc-------cCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 439 KHIVHLYTYHGGDELRNHLE-------IEAH-------VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~-------~~~h-------~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
++.|+++|..++.. ..... ..+. -...+.++|+|++.. ++++.+.++.|++||..++... .+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-EEe
Confidence 57799999877542 21100 0000 113468999996554 5778888899999998877543 221
Q ss_pred cC---------------CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC--------------------
Q 002196 505 GH---------------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------------------- 549 (954)
Q Consensus 505 ~~---------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------- 549 (954)
+. -.....++++++++ .++++-+.++.|++||+++.........
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 11 12345677877653 3556667789999999986543221100
Q ss_pred -CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC------------CCCCeEEEEEeCCCCEEEEE
Q 002196 550 -PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------GKRSVGVVQFDTTKNRFLAA 616 (954)
Q Consensus 550 -~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~ 616 (954)
.......++++++|..+++-.. +..|++||..++......... .-.....++++++|+.+++-
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0113468899999986655443 456999999887665332110 00145678999999988888
Q ss_pred ECCCeEEEEECCCCce
Q 002196 617 GDEFMIKFWDMDNVNL 632 (954)
Q Consensus 617 ~~dg~i~iwd~~~~~~ 632 (954)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8999999999998765
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=1.9e-07 Score=88.36 Aligned_cols=226 Identities=12% Similarity=0.039 Sum_probs=151.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCC
Q 002196 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (954)
Q Consensus 653 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (954)
...+||.|+.-|...+|...+.+...+....+...+.-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~---------------------------------------- 122 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK---------------------------------------- 122 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhh----------------------------------------
Confidence 3458999999999999999988666666665554433110
Q ss_pred CCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCC
Q 002196 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812 (954)
Q Consensus 733 ~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~ 812 (954)
+.......+..++.|.++++.++........... ..-.+.++++++|++++++.++...|..|.++...
T Consensus 123 -r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--- 191 (344)
T KOG4532|consen 123 -RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--- 191 (344)
T ss_pred -hhcccccceeeccCCcceeEEEEecCcccceeec-------cccceeeeEEcCCCceEEEecCCCcceEEEeCCcc---
Confidence 0111122345667778888888764322222211 12337889999999999999999999999876421
Q ss_pred CCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEE-----EeeCCCCCC
Q 002196 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM-----TTFMPPPPA 886 (954)
Q Consensus 813 ~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~-----~~~~~h~~~ 886 (954)
.......... ..+.-.+..||.....+|++. ||++.|||+...... .+-+.|.+.
T Consensus 192 -----------------ey~~~~~~a~--t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa 252 (344)
T KOG4532|consen 192 -----------------EYIENIYEAP--TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGA 252 (344)
T ss_pred -----------------ceeeeeEecc--cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCc
Confidence 1111111111 345556788999999999999 999999998754332 223458899
Q ss_pred eeEEEecCCCCc--eEEEEecCccEEEEeccccceEEEec-------CCccc-eeEEEEecCCCeEEEecCCc
Q 002196 887 ATFLAFHPQDNN--IIAIGMEDSSIQIYNVRVDEVKTKLK-------GHQKR-ITGLAFSNTLNVLVSSGADS 949 (954)
Q Consensus 887 v~~l~~sp~d~~--~lasgs~dg~i~iwd~~~~~~~~~~~-------~h~~~-V~~l~~s~dg~~l~s~s~Dg 949 (954)
++.+.|++ .|. +|...-.-+.+.+-|++++...+.+. .|... |..-.|+.++..+.+..++.
T Consensus 253 ~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 253 FRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred eEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 99999998 553 55555556789999999986554432 23333 78888998887766666554
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.5e-06 Score=95.17 Aligned_cols=197 Identities=11% Similarity=0.014 Sum_probs=124.5
Q ss_pred CeEEEEEccCCCE-EEEEEcC---CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC--CeEEEEE
Q 002196 420 SVNRVMWSPDGTL-FGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWD 493 (954)
Q Consensus 420 ~V~~l~~spdg~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--g~i~iwd 493 (954)
.+....|||||+. ++..+.+ ..|.++|+.+++... +....+......|+|||+++ +++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~l-a~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSKL-LLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCEE-EEEEccCCCcEEEEEE
Confidence 7788999999985 6654443 568889998876433 33345566778899999973 4444444 5788889
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe-cCC--eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
+.++... .+..+........|+|++ +.|+..+ ..+ .|.+.|+.+++...... .+.. ...|+|||+.++...
T Consensus 264 l~~g~~~-~LT~~~~~d~~p~~SPDG--~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 264 TNTKTLT-QITNYPGIDVNGNFVEDD--KRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred CCCCcEE-EcccCCCccCccEECCCC--CEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence 8877643 344343323344677665 5555444 334 57777877655433222 1222 248999999998877
Q ss_pred eCCC-----CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCC
Q 002196 571 TNKE-----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNV 630 (954)
Q Consensus 571 ~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 630 (954)
...+ +...|.+.|+.++.... +.... ......|+|||+.++..+.+ ..+.+.++...
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRR-LTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEE-CCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 5432 22468889998886533 33221 23357899999988776632 24667777543
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=6e-09 Score=107.48 Aligned_cols=240 Identities=13% Similarity=0.199 Sum_probs=167.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC-cce---eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~-~~~---~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
+.||...|..++--.+.+.+++++.|++|++|.++.. ..+ .+..++..|+.+|.++.|..+.+ +++ +.||-|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~--ScD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIA--SCDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eee--eccCcc
Confidence 7899999999998889999999999999999998642 222 24457889999999999998887 344 557899
Q ss_pred EEEECCCCceEEEecc---C--CCCeEEEeeeccCCccEEEEE-ecCCeEEEEeCCCCCceeEee-----CCCCceEEEE
Q 002196 490 KVWDAVTGTKQYIFEG---H--ESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYD-----APGHSSTMMA 558 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~ 558 (954)
.+||.--|+++..+.. | .+.|.++ ++-+...++.+ +...+|+++|.+..+-...+. .+...+.+++
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 9999888877654321 2 2234443 33233455544 778999999998876554433 3344688999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEE-EECCCCceeEEEe
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF-WDMDNVNLLASID 637 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 637 (954)
..+.|+.++++-.++ .|.+.|.++|..+.......- ....++ .|..+.++....|.++.+ |....|....+.+
T Consensus 884 Va~~GN~lAa~LSnG----ci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNG----CIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eccCcchhhHHhcCC----cEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 999999999886544 499999999998876654332 222222 356677888788889998 9887776655554
Q ss_pred cCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 638 ~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
.+.. +.. -.-.-|.-|+++.....+.+|.
T Consensus 958 pppe--pah--flqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 958 PPPE--PAH--FLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCCc--chh--hhhccCceeEEeccCcEEEEEe
Confidence 3211 111 1112466788887777788774
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=8.2e-09 Score=120.94 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=164.8
Q ss_pred CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc-CCCC
Q 002196 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HESP 509 (954)
Q Consensus 431 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 509 (954)
+.+.....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ....
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred ccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcch
Confidence 3444444455555555544332 2344556688888888887 789999999999999999988877753 3377
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC--
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-- 587 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-- 587 (954)
|+.+.|+..+ +.+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||.--.
T Consensus 2254 vtr~~f~~qG--nk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2254 VTRSRFNHQG--NKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhhhhhcccC--CceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCcc
Confidence 8888887655 578888999999999877 445555666777777777765 56777666544 456899996432
Q ss_pred -eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 588 -AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 588 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
..+. ..|.+ .++++++.|..+.+++||.+|.|++||++..+.++.++. ++ ...++++|+..|.+
T Consensus 2328 ~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2328 NSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred cceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccce
Confidence 2333 56665 899999999999999999999999999998887776653 33 45689999999999
Q ss_pred EEEEccCCCeeEEEecc
Q 002196 667 KILANADGIRLLRTVES 683 (954)
Q Consensus 667 ~iwd~~~~~~~~~~~~~ 683 (954)
+||++..- .++..+..
T Consensus 2393 kIw~~s~~-~ll~~~p~ 2408 (2439)
T KOG1064|consen 2393 KIWRLSEF-GLLHTFPS 2408 (2439)
T ss_pred EEEEcccc-chhhcCch
Confidence 99999876 55555543
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=2.4e-06 Score=85.65 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=154.6
Q ss_pred eeEEEEcCCCCeEEEEEEcCCe-EEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 359 VKSMDFHPVQQILLVVGTNMGD-VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
.-.++.+|+....++.+-.-|+ ..+||..+++...... .-....|.+| -.||+||++|++.-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 3478888976668888887774 7789999998775311 1122234555 57999999999873
Q ss_pred -----cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 438 -----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 438 -----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
..|.|-|||...+ ++...++..|.-.-..+.+.|||+.++++-|+-. =..++|+....+..-.
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~-----Thpd~GR~kLNl~tM~----- 137 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE-----THPDSGRAKLNLDTMQ----- 137 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc-----cCcccCceecChhhcC-----
Confidence 3478999999832 3444477777777888999999985333333311 0112233222222111
Q ss_pred EeeeccCCccEEEEEecCCe-EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC---ceEEEEEeCCCCe
Q 002196 513 ICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG---ESYLVEWNESEGA 588 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~---~~~i~iwd~~~~~ 588 (954)
+ .+.+.-..+|. +--|.+.. ..+...+.-+++.++|..++..-..++. -..+.+++. +.
T Consensus 138 ------p--sL~~ld~~sG~ll~q~~Lp~-------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~ 200 (305)
T PF07433_consen 138 ------P--SLVYLDARSGALLEQVELPP-------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GG 200 (305)
T ss_pred ------C--ceEEEecCCCceeeeeecCc-------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CC
Confidence 1 12222122333 22222210 2244578889999999877766543331 123444443 33
Q ss_pred EEEEEecC------CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 589 VKRTYHGL------GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 589 ~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
.+..+... -...+.+|++++++..+++.+ ..+.+.+||..+++.+...... .+..++..+++ ++++.+
T Consensus 201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG 275 (305)
T ss_pred cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC
Confidence 23333221 123789999999999887777 7789999999999999887644 56677777776 666544
Q ss_pred C
Q 002196 662 N 662 (954)
Q Consensus 662 ~ 662 (954)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 3
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2.7e-08 Score=102.72 Aligned_cols=288 Identities=10% Similarity=0.129 Sum_probs=180.6
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCc-eeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE-RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
+|...|..++--.+.. -++++++|.+|++|.++... .+.+.. ....+..|+.+|..+.|-.+-++
T Consensus 733 GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsa-------------CQfTY~aHkk~i~~igfL~~lr~ 798 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSA-------------CQFTYQAHKKPIHDIGFLADLRS 798 (1034)
T ss_pred CcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccce-------------eeeEhhhccCcccceeeeeccce
Confidence 4888898887666555 56899999999999987532 222111 11236789999999999999998
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC-CCceEEEEEcCCCeEEEEECCCCceEEEec-----cC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-----GH 506 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~ 506 (954)
++++ ||-|.+||.--+..+.+...-. ..+.+..+...++ .+.++++.++...+|+++|.+.+.....++ +.
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 8865 7889999987776554332222 2234444444455 444344555889999999999988766654 33
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE-EeCC
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE-WNES 585 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i-wd~~ 585 (954)
...+.++++.+.+ +.++.+-.+|.|.+.|.+++..+.....-......++ .|..+.++.... +..+.+ |..-
T Consensus 876 na~~R~iaVa~~G--N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHslaVnWhal 948 (1034)
T KOG4190|consen 876 NALTRAIAVADKG--NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLAVNWHAL 948 (1034)
T ss_pred chheeEEEeccCc--chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeEeeehhc
Confidence 4567888887766 6899999999999999998765544332221111221 234444444433 223555 7766
Q ss_pred CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC----CceeEEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN----VNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
.|....+.+.... +..-+ ..-|..++++.....+.+|.-.. ...+..+....-.+..++++.-|-+.-+..|.
T Consensus 949 dgimh~q~kpppe-pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen 949 DGIMHLQDKPPPE-PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred CCeeeeccCCCCc-chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccC
Confidence 6655444443322 22111 12255677777667777875221 12233344333345677888888666666677
Q ss_pred CCCcEEE
Q 002196 662 NDNGIKI 668 (954)
Q Consensus 662 ~dg~i~i 668 (954)
..|.|.+
T Consensus 1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred CCCceee
Confidence 8887765
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=2.2e-09 Score=116.77 Aligned_cols=216 Identities=15% Similarity=0.218 Sum_probs=160.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC-eEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-VIKVW 492 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-~i~iw 492 (954)
+..|+...+|++||-+.++|+.|+..|.|+++++.+|.... ...+|...|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67799999999999999999999999999999999998666 67899999999999999995 233333333 57799
Q ss_pred ECCC-CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC----CCceEEEEECCCCCEEE
Q 002196 493 DAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP----GHSSTMMAYSADGARLF 567 (954)
Q Consensus 493 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~ 567 (954)
++.+ +...++|.. -.++.|+... ..-+.|+.-....+||+.+.....++... ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9764 445555543 2445665543 34455555567889999988766553221 12447889999998887
Q ss_pred EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
--| .+||.+..+.++.|..... .+ .-.|+|.|..++..++ |||+++.+.++..+.- .-..
T Consensus 1247 ndG---------vLWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dqc~ 1306 (1516)
T KOG1832|consen 1247 NDG---------VLWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQCA 1306 (1516)
T ss_pred eCc---------eeeeeccHHHHhhhhhhee-cc-cccccCCCceEEeech-----hhhhHHHHHHhcCccc----cceE
Confidence 532 5899999888887766542 22 2359999999998886 9999999888877643 2357
Q ss_pred EEECCCCCEEEE
Q 002196 648 IRFNKEGILLAV 659 (954)
Q Consensus 648 v~~s~~~~~l~s 659 (954)
+.|+..|..+..
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 889888877654
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=5.6e-07 Score=85.23 Aligned_cols=148 Identities=9% Similarity=-0.012 Sum_probs=106.8
Q ss_pred eEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 421 V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
+.++++|+|++++++.+....|..|.++..............++.-.+..|+.... .++++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999976543322223344555667889998877 6999999999999999875433
Q ss_pred E-----EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC--------ceEEEEECCCCCEEE
Q 002196 501 Y-----IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--------SSTMMAYSADGARLF 567 (954)
Q Consensus 501 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~ 567 (954)
. +-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++............ .+....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 2 223588999999999766556777766678899999998775544332221 255556666655555
Q ss_pred EEE
Q 002196 568 SCG 570 (954)
Q Consensus 568 ~~~ 570 (954)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 544
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=2.4e-06 Score=94.37 Aligned_cols=304 Identities=12% Similarity=0.074 Sum_probs=165.8
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCC----------ce-EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----------SS-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
..+++++.+|.+..+|.++++.......... .+ ..+.. ++..+++++. ++.+..+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 4666677777777777777766655443221 00 01111 3445666543 345999999999988
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC--CCCEEEEEeCCCcEEE
Q 002196 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK--EGILLAVSTNDNGIKI 668 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~s~~~dg~i~i 668 (954)
.+...... ...+.... +..++.+..+|.|+.+|..+|+.+.............. .-+| .+..++.++.+|.+..
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEE
Confidence 77665432 11112222 45677788899999999999999988864311000000 0112 1235666778899999
Q ss_pred EEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccc
Q 002196 669 LANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV 748 (954)
Q Consensus 669 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d 748 (954)
+|..+|....+ ...... . + ..
T Consensus 220 ~d~~~G~~~W~-~~~~~~---------------------------------------------~------~------~~- 240 (394)
T PRK11138 220 VLMEQGQLIWQ-QRISQP---------------------------------------------T------G------AT- 240 (394)
T ss_pred EEccCChhhhe-eccccC---------------------------------------------C------C------cc-
Confidence 99888833221 110000 0 0 00
Q ss_pred ccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCC
Q 002196 749 EKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPP 828 (954)
Q Consensus 749 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~ 828 (954)
..-+++++ ...++ + .+..+++++.+|.+..+|..+++ .+|...
T Consensus 241 ~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~~ 283 (394)
T PRK11138 241 EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKRE 283 (394)
T ss_pred chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEeec
Confidence 00000000 00111 1 13345566667777666544321 123221
Q ss_pred CcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCC-CCeeEEEecCCCCceEEEEecC
Q 002196 829 SGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMED 906 (954)
Q Consensus 829 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~d~~~lasgs~d 906 (954)
.+ . ...+.. ++..++.++ +|.+..+|..+|+.+.....-. ....+.... ++ .|+.++.|
T Consensus 284 ~~-----------~---~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~ 344 (394)
T PRK11138 284 YG-----------S---VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSE 344 (394)
T ss_pred CC-----------C---ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCC
Confidence 11 0 111222 344555555 8999999999998876543211 122333332 34 66778999
Q ss_pred ccEEEEeccccceEEEecCCccceeE-EEEecCCCeEEEecCCccee
Q 002196 907 SSIQIYNVRVDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 907 g~i~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~s~Dg~I~ 952 (954)
|.+++.|..+|+.+.+.+-....+.+ ..+. +..|+.++.||.|.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~ 389 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVY 389 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEE
Confidence 99999999999988877643333332 2232 44688889998764
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=6.3e-06 Score=79.95 Aligned_cols=247 Identities=11% Similarity=0.108 Sum_probs=136.8
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
.++.+++|+ +||. -.|..|.|=..++.=......+ .+.++..-.=..++||||+.+||.+...|
T Consensus 2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 467788898 5544 3567777766555321111111 12334445567899999999999999999
Q ss_pred EEEEEEeeCCcceee--eeeee-cccCCEEEEEEecCC-----CceEEEEEcCCCeEEEEECCCC-----ceEEEec--c
Q 002196 441 IVHLYTYHGGDELRN--HLEIE-AHVGSVNDLAFSYPN-----KQLSVVTCGEDRVIKVWDAVTG-----TKQYIFE--G 505 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~--~~~~~-~h~~~v~~~~~s~~~-----~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~--~ 505 (954)
+|+++|+.......- ...+. .-...|..|.|.+.. .. -|+.-..+|.++-|-+..+ +..+.|. .
T Consensus 66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 999999986443210 00011 123467777776542 11 2555566777776654322 2333333 2
Q ss_pred -CCCCeEEEeeeccCCccEEEEEecC-CeEEEEeCCCCCceeEeeCCCCceEEEEE---CCCCCEEEEEEeCCCC--ceE
Q 002196 506 -HESPVYSICPHHKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAY---SADGARLFSCGTNKEG--ESY 578 (954)
Q Consensus 506 -~~~~v~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~---s~~g~~l~~~~~~~~~--~~~ 578 (954)
+...|.++.+++.. ++|+.|+.. ..-..+. .....+++-.. +|..+.+. ...++.. ..+
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~ 210 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKR 210 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEEcc-ccCccccccccc
Confidence 46789999999876 466655532 2100000 00111111111 11111111 1111000 001
Q ss_pred EEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
..+|.+-+.+... ..+.....|..+.+||||..|++...+|.|.+|++.+-.+......+
T Consensus 211 ~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 211 RGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 2233333222211 12333448999999999999999999999999999988777776543
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=8.5e-06 Score=89.98 Aligned_cols=189 Identities=15% Similarity=0.065 Sum_probs=113.4
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCC--CeE-----EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHES--PVY-----SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG 551 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 551 (954)
.+++++.++.+.-+|..+|+.+........ ... .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 377788889999999999998876543220 000 0000111112467788899999999999988877665543
Q ss_pred CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCC----CeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002196 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR----SVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 552 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (954)
....+.... + ..++++.. ++.+..+|..+|+.+..+...... ...+.... +..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEEc
Confidence 221111221 3 34555443 345999999999988877643110 00111111 346777888999999999
Q ss_pred CCCceeEEEecCCCC--C---CcceEEECC--CCCEEEEEeCCCcEEEEEccCCC
Q 002196 628 DNVNLLASIDADGGL--Q---ASPCIRFNK--EGILLAVSTNDNGIKILANADGI 675 (954)
Q Consensus 628 ~~~~~~~~~~~~~~~--~---~v~~v~~s~--~~~~l~s~~~dg~i~iwd~~~~~ 675 (954)
.+|+.+......... . ....+..+| .+..++.++.+|.+..+|..++.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999887665422110 0 011111223 24466667778899999888873
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=5.6e-06 Score=83.14 Aligned_cols=257 Identities=12% Similarity=0.153 Sum_probs=146.6
Q ss_pred EEEEECCCCCE-EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeE-EEEEeCCCCEEEEEE-----CCCeEEEEEC
Q 002196 555 TMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG-VVQFDTTKNRFLAAG-----DEFMIKFWDM 627 (954)
Q Consensus 555 ~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~-----~dg~i~iwd~ 627 (954)
-.++.+|.... ++.+-.. ..+..+||..+++....+....+...+ .-+|++||++|++.- ..|.|-|||.
T Consensus 8 H~~a~~p~~~~avafaRRP---G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRP---GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cceeeCCCCCeEEEEEeCC---CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 35778885444 4444332 336889999999988877665442222 367999999999863 5689999999
Q ss_pred C-CCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCcccccc
Q 002196 628 D-NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706 (954)
Q Consensus 628 ~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 706 (954)
. +.+.+..+..++- .-..+.+.|||+.|+++- |-|.- ..+++...+. +..-
T Consensus 85 ~~~~~ri~E~~s~GI--GPHel~l~pDG~tLvVAN--GGI~T-hpd~GR~kLN-l~tM---------------------- 136 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGI--GPHELLLMPDGETLVVAN--GGIET-HPDSGRAKLN-LDTM---------------------- 136 (305)
T ss_pred cCCcEEEeEecCCCc--ChhhEEEcCCCCEEEEEc--CCCcc-CcccCceecC-hhhc----------------------
Confidence 8 6677777776532 346789999998888763 22321 1111211110 0000
Q ss_pred CCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEec
Q 002196 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 786 (954)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 786 (954)
. -++...|..+ .....+..++...|...++.+++.+
T Consensus 137 -----------------------~------------------psL~~ld~~s---G~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 137 -----------------------Q------------------PSLVYLDARS---GALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred -----------------------C------------------CceEEEecCC---CceeeeeecCccccccceeeEEecC
Confidence 0 0000000000 1112222343344777899999999
Q ss_pred CCceEEEeecCCeEEEeeccCCCCCCC-CcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--C
Q 002196 787 SGLAILALASNAVHKLWKWPRNERNST-GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--G 863 (954)
Q Consensus 787 dg~~l~~~~~dg~v~lw~~~~~~~~~~-g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--d 863 (954)
+|..++..-..|.-. ...|. +.......+++.+....... .-...+-+|+++++|.++++.+ .
T Consensus 173 ~G~V~~a~Q~qg~~~-------~~~PLva~~~~g~~~~~~~~p~~~~~-------~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPG-------DAPPLVALHRRGGALRLLPAPEEQWR-------RLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred CCcEEEEEecCCCCC-------ccCCeEEEEcCCCcceeccCChHHHH-------hhCCceEEEEEeCCCCEEEEECCCC
Confidence 987554443322110 00000 00000001111111111111 1456788999999999998888 6
Q ss_pred CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEe
Q 002196 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (954)
Q Consensus 864 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs 904 (954)
+.+.+||..+++.+.... -..+..++-.+ ++ ++++.+
T Consensus 239 g~~~~~d~~tg~~~~~~~--l~D~cGva~~~-~~-f~~ssG 275 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP--LPDACGVAPTD-DG-FLVSSG 275 (305)
T ss_pred CEEEEEECCCCCEeeccc--cCceeeeeecC-Cc-eEEeCC
Confidence 889999999999988765 34566777776 55 555543
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=9.1e-06 Score=78.88 Aligned_cols=232 Identities=9% Similarity=0.119 Sum_probs=132.5
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCC--cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGG--DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
.++.+.||+.||.. .|..|.|-..+.. ..+.+...-+...-.=..++||||+. +|+.+...|+|+++|+.. ..+
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g-~~l 77 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMG-SEL 77 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEeccc-cee
Confidence 35778899998876 6667777655432 11121111122223356799999999 799999999999999764 444
Q ss_pred EEeccC-------CCCeEEEeeeccCC----ccEEEEEecCCeEEEEeCCCC-----CceeEeeC---CCCceEEEEECC
Q 002196 501 YIFEGH-------ESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNL-----GSRVDYDA---PGHSSTMMAYSA 561 (954)
Q Consensus 501 ~~~~~~-------~~~v~~~~~~~~~~----~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~---~~~~v~~~~~s~ 561 (954)
..+... ...|..+.|..... ...|+.-..+|.++-|-+..+ .....+.. ..+.|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 444321 23455555543221 125677778888887765321 22223332 245899999999
Q ss_pred CCCEEEEEEeCCCCceE-------EEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeE
Q 002196 562 DGARLFSCGTNKEGESY-------LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (954)
Q Consensus 562 ~g~~l~~~~~~~~~~~~-------i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (954)
..+.|+++|.....+.. +..|.+-++.+ -.....+.+...-.... +-.+|.+-+.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFS 223 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCcccccccc---ccceeeccceeeee
Confidence 99999888754321111 12222111111 11100111111111111 12344433322222
Q ss_pred EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
... .....|..+..||||..||+...+|.|.+|++.+-
T Consensus 224 ~~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 224 RQG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111 22567999999999999999999999999999875
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=1.6e-07 Score=94.51 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=72.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
.-||-+-++.++||||+++|+++..|..|+|-.+..--.+.. -+-||+..|..++..++. .|+++|.|+++++||
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--fclGH~eFVS~isl~~~~---~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--FCLGHKEFVSTISLTDNY---LLLSGSGDKTLRLWD 221 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--hccccHhheeeeeeccCc---eeeecCCCCcEEEEe
Confidence 568999999999999999999999999999987765433332 245899999999998765 489999999999999
Q ss_pred CCCCceEEEec
Q 002196 494 AVTGTKQYIFE 504 (954)
Q Consensus 494 ~~~~~~~~~~~ 504 (954)
+.+|+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886654
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=2.3e-07 Score=89.46 Aligned_cols=249 Identities=15% Similarity=0.238 Sum_probs=163.4
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc--ceeeeeeeeccc------------CCEEEEEEecCCCceEEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVT 482 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~~~~s~~~~~~~l~s 482 (954)
....|+++.|...|.||++|...|.|.+|.-+... ..+....+++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44689999999999999999999999999765432 112222355554 3588899988776657888
Q ss_pred EcCCCeEEEEECCCCceE------------------------------------------EEe-ccCCCCeEEEeeeccC
Q 002196 483 CGEDRVIKVWDAVTGTKQ------------------------------------------YIF-EGHESPVYSICPHHKE 519 (954)
Q Consensus 483 ~~~dg~i~iwd~~~~~~~------------------------------------------~~~-~~~~~~v~~~~~~~~~ 519 (954)
.+.|.+|++|.+...... +.+ ..|...|+++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 899999999987643100 111 3566677888776544
Q ss_pred CccEEEEEecCCeEEEEeCCCCCceeE---eeCCCC-----ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE-
Q 002196 520 NIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK- 590 (954)
Q Consensus 520 ~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~- 590 (954)
+.++ .+.|-.|.+|+++....... ...+.. -|++..|+|....++.-+.+ .+.|.+-|++...+.
T Consensus 185 --et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS---kG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS---KGEIKLNDLRQSALCD 258 (460)
T ss_pred --heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC---CCcEEehhhhhhhhcc
Confidence 4444 45678899999876544332 222222 46788899975443332221 334999998843221
Q ss_pred ---E----EEecC-------CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CceeEEEecCCC----------CCCc
Q 002196 591 ---R----TYHGL-------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGG----------LQAS 645 (954)
Q Consensus 591 ---~----~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~v 645 (954)
. .+.+. --..|..+.|+++|+++++-+. -+|++||++. ..++.+++.|.. ...|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 0 11110 0125677899999999998775 4899999986 456677654321 1122
Q ss_pred ---ceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 646 ---PCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 646 ---~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
..+.|+-|.+.+.+|+......++-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 257788888999999988888887643
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=1.5e-05 Score=81.68 Aligned_cols=218 Identities=19% Similarity=0.221 Sum_probs=138.8
Q ss_pred EEEEcc-CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEe-cCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-YPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 423 ~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
+++|.+ ++.++++--..+.|..|+..++.... +... . ...+++. +++. ++.+..++ +.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence 578888 66666666678999999998875321 2211 2 7777888 6654 55555544 455599988654
Q ss_pred EEecc-----CCCCeEEEeeeccCCccEEEEEecC--------CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEE
Q 002196 501 YIFEG-----HESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 501 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
..... .....+.+++.+++ .+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43332 34556788887655 566665543 456666666 23332222344678999999999888
Q ss_pred EEEeCCCCceEEEEEeCCC--CeE--EEEEe-cCCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCC
Q 002196 568 SCGTNKEGESYLVEWNESE--GAV--KRTYH-GLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~--~~~--~~~~~-~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 641 (954)
++... ...|..+++.. +.. ...+. .... .....+++..+|+..++....+.|.+++.. |+.+..+...
T Consensus 150 v~ds~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-- 223 (246)
T PF08450_consen 150 VADSF---NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-- 223 (246)
T ss_dssp EEETT---TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--
T ss_pred ecccc---cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--
Confidence 76532 44588888753 211 12221 1121 136789999999988888889999999987 8999888876
Q ss_pred CCCcceEEE-CCCCCEEEEE
Q 002196 642 LQASPCIRF-NKEGILLAVS 660 (954)
Q Consensus 642 ~~~v~~v~~-s~~~~~l~s~ 660 (954)
...+++++| .++.+.|...
T Consensus 224 ~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEE
Confidence 337899999 4666655544
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.71 E-value=1.4e-07 Score=94.79 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=113.1
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE-
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA- 436 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~- 436 (954)
.+..+..+|.++ ++|++..+....++++..... ..+.|+. ..-...-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~------------~~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV------------SCVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE------------eecccCcceeeeeeccceEEEEe
Confidence 345566777777 888888888777777655433 1111111 0111233444455555554444
Q ss_pred --EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe-ccCCCCeEEE
Q 002196 437 --YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSI 513 (954)
Q Consensus 437 --~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~ 513 (954)
+....+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|++-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44455666666654433 3678999999999999998 7999999999999876655555544 4799999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
+..++ ..|+++|.|+++++||+.+++....+
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCccccc
Confidence 98654 56999999999999999988877544
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.9e-07 Score=92.56 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=171.3
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe-cCCCCCCcceEEECCCCCEEEEEeC-CCcEEEEEccCCCee
Q 002196 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-ADGGLQASPCIRFNKEGILLAVSTN-DNGIKILANADGIRL 677 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~ 677 (954)
.|+.+.. ...+++++++.||.++.|.-..-.-+.-+. ...|...|.+++.+-++.++++.+. |..++++|+.+- ..
T Consensus 11 ~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-Dm 88 (558)
T KOG0882|consen 11 VITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DM 88 (558)
T ss_pred eeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-ch
Confidence 4555543 345899999999999999864422222211 1233557888899999999999888 999999998765 22
Q ss_pred EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 002196 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (954)
Q Consensus 678 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~ 757 (954)
...++-..- |.+..+-.. .++ +....-++.-.++.+.++|-.
T Consensus 89 inmiKL~~l-------------Pg~a~wv~s---------------------kGd----~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 89 INMIKLVDL-------------PGFAEWVTS---------------------KGD----KISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred hhhcccccC-------------CCceEEecC---------------------CCC----eeeeEEeecccCCCcEEECCc
Confidence 211110000 000000000 000 001122334455777777754
Q ss_pred cccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccC
Q 002196 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 837 (954)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~ 837 (954)
....+ .......|..+|..+.+++-+..+++....|.|.-|.....-..|++.+ .|..+...-+....
T Consensus 131 ~d~~q-----~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l-------~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 131 GDFCQ-----DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL-------NFELKHETDLYGFP 198 (558)
T ss_pred CCcCc-----cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc-------cccccccchhhccc
Confidence 31111 1111234889999999999999999999999999998764322333322 34444444333222
Q ss_pred CCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCC--------------------------------CC
Q 002196 838 SDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP--------------------------------PP 884 (954)
Q Consensus 838 ~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~--------------------------------h~ 884 (954)
+ ......++.|||+|..+++-+ |.+|++++.++|+.++.+.. |.
T Consensus 199 K---~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 199 K---AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred c---cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 2 456788999999999999888 89999999999988775532 11
Q ss_pred -CCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEec
Q 002196 885 -PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (954)
Q Consensus 885 -~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~ 924 (954)
..-+.++|.. .|++|..|+-=| |++.++.++++++.+-
T Consensus 276 ~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 276 STVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred CcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1236678887 888999888766 9999999998877664
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=2.9e-07 Score=86.78 Aligned_cols=209 Identities=14% Similarity=0.224 Sum_probs=125.0
Q ss_pred eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc
Q 002196 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~ 438 (954)
|+.+.|+.+. .|+++..++.+.......+.+... |+-.....+ ...+..|+++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~~--~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGIDP--FKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcCc--eeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 577888887777766655543321 111111111 1122344444444445556788999999
Q ss_pred CCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEc-----CCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 439 KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
||.+.+.+.+.-..+. ..+. .|.+. .+.+....+. .+.+++ .-+..+.|+++..+....-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 12221 2222333344 232222 1234456665543322211122334899
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCcee-EeeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
++-+|... +.+++|+.||.+-+||+++..... .+..|..++..+-|+| ++..|++++.+|+ +..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs----lw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS----LWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc----EEEEcCCC
Confidence 99998776 788999999999999999875433 3566788999999998 5678999987665 99999764
No 304
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=4.8e-05 Score=72.23 Aligned_cols=146 Identities=13% Similarity=0.061 Sum_probs=96.4
Q ss_pred EcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEE
Q 002196 364 FHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 443 (954)
Q Consensus 364 ~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~ 443 (954)
.-+|.+.+++.|+..+.+.--|..+|+..-+ . --...|.+-+.- -|++++.|...|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3455567899999999999999999987643 1 112333332222 578899999999999
Q ss_pred EEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccE
Q 002196 444 LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523 (954)
Q Consensus 444 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 523 (954)
+.+.++|........+..-. ......+++. ++..|+.|++.+..|.++..++...+...+...+-++.+.. ..
T Consensus 77 fl~~~tGs~~w~f~~~~~vk---~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~--~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETVK---VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD--GS 149 (354)
T ss_pred EEEecchhheeeeeehhhhc---cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCC--ce
Confidence 99999997766433322211 1233456677 79999999999999999999998876443333333344422 24
Q ss_pred EEEEecCCeEEEEe
Q 002196 524 IFSTATDGKIKAWL 537 (954)
Q Consensus 524 l~s~s~dg~i~iwd 537 (954)
|+.+...|.+.--.
T Consensus 150 ly~a~t~G~vlavt 163 (354)
T KOG4649|consen 150 LYAAITAGAVLAVT 163 (354)
T ss_pred EEEEeccceEEEEc
Confidence 55555556554443
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=5e-05 Score=77.84 Aligned_cols=221 Identities=16% Similarity=0.129 Sum_probs=142.6
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc-cCCCEEEEEEcC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-PDGTLFGVAYSK 439 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~s~~~d 439 (954)
++.|.+....|+++-...+.|..|+..++..... . . .....+++. +++ .|+.+..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g-~l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDG-RLYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTS-EEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCC-EEEEEEcC
Confidence 6788885555888877889999999998865421 1 1 227777888 565 45555555
Q ss_pred CEEEEEEeeCCcceeeeeeee--c-ccCCEEEEEEecCCCceEEEEEcCC--------CeEEEEECCCCceEEEeccCCC
Q 002196 440 HIVHLYTYHGGDELRNHLEIE--A-HVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~ 508 (954)
+ +.++|..+++... ..... . .....+.+++.|+|+ +.++.... |.|..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 5 4555988875432 22232 1 345689999999998 56665443 568888876 55444333 345
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc----ee-EeeCCCC--ceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS----RV-DYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~-~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
..+.++|++++. .++++-+..+.|..++++.... .. ....... ..-.+++..+|+..++... ...|.+
T Consensus 135 ~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~~ 209 (246)
T PF08450_consen 135 FPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIVV 209 (246)
T ss_dssp SEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEEE
T ss_pred cccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEEE
Confidence 578899998763 3445677788899999875443 11 1222222 4778999999987666543 335999
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEe-CCCCEEEEEE
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 617 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 617 (954)
+|.. |+.+..+..... .+++++|. ++.+.|+..+
T Consensus 210 ~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 9987 888888877644 78899994 6656555543
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.66 E-value=1.5e-05 Score=81.55 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=138.0
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeee
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 457 (954)
+|+|..||..+|+.+-...+ ..-.....+. ..+++.++++++.++.+..||..+|+.+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-----------------~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-----------------GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----------------SSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEC-----------------CCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 68899999999987654211 1101111211 33467778888899999999999998765332
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe-ccCCC---CeEEEeeeccCCccEEEEEecCCeE
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHES---PVYSICPHHKENIQFIFSTATDGKI 533 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~s~s~dg~i 533 (954)
+.+ .+...... ++. .++.++.++.++.+|..+|+.+... ..... ..........+ ..++.+..++.|
T Consensus 64 -~~~---~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPG---PISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKL 134 (238)
T ss_dssp -CSS---CGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEEEETCSEE
T ss_pred -ccc---cccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEec--CEEEEEeccCcE
Confidence 222 11111222 244 3666668889999999999998884 33211 11222222223 678888889999
Q ss_pred EEEeCCCCCceeEeeCCCCc----------eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEE
Q 002196 534 KAWLYDNLGSRVDYDAPGHS----------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~~~~~----------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 603 (954)
..+|.++++........... +..-....++ .++.+..++. .+.+ |..+++.+.... . . .+..
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~---~~~~-d~~tg~~~w~~~-~-~-~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR---VVAV-DLATGEKLWSKP-I-S-GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS---EEEE-ETTTTEEEEEEC-S-S--ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCe---EEEE-ECCCCCEEEEec-C-C-CccC
Confidence 99999998887776553322 1222223344 6666554332 3444 999998665333 2 2 2332
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCceeEE
Q 002196 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635 (954)
Q Consensus 604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 635 (954)
....++..++.++.++.|..||+++|+.+.+
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 1456778888888999999999999987654
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.64 E-value=7.2e-06 Score=90.04 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=74.0
Q ss_pred CCCccEEEeccCCCeEEEec--CCeEEEEEcccccE------------EEeeCCCCCCeeEEEecCCCCceEEEEecCcc
Q 002196 843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908 (954)
Q Consensus 843 ~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~------------~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~ 908 (954)
......+++||||+++++++ +.+|.|.|+.+.+. +.+... .......+|.+ +|....+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 45677899999999999887 79999999987553 333332 23356789998 8888888899999
Q ss_pred EEEEeccc----------cceEEEecC-----CccceeEEEEecCCCeEEEec
Q 002196 909 IQIYNVRV----------DEVKTKLKG-----HQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 909 i~iwd~~~----------~~~~~~~~~-----h~~~V~~l~~s~dg~~l~s~s 946 (954)
|-.||+.+ ...+.++.- |......=.-.|||+||++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999987 345555543 332222223478999999864
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.62 E-value=2.8e-05 Score=79.46 Aligned_cols=222 Identities=16% Similarity=0.099 Sum_probs=138.5
Q ss_pred CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeecc
Q 002196 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 518 (954)
+|.|..||..+|+.+.... +..-.....+... +++. .+++++.++.+..||..+|+.+..+.. ...+...- ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~~~-~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVATAV-PDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEETEE-EETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccceEE-EeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence 6889999998888776432 2111122222223 2455 477778999999999999999887765 32222111 112
Q ss_pred CCccEEEEEecCCeEEEEeCCCCCceeEe-eCCC--C-ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe
Q 002196 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPG--H-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (954)
Q Consensus 519 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~--~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 594 (954)
+ ..++.++.++.+..+|..+++..... .... . .........++..++++..+ +.+..+|+++|+.+..+.
T Consensus 76 ~--~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 76 G--GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS----GKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp T--TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC----SEEEEEETTTTEEEEEEE
T ss_pred c--cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc----CcEEEEecCCCcEEEEee
Confidence 2 46777778899999999998887763 3221 1 11222333347777777643 349999999999998887
Q ss_pred cCCCCC---------eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCc
Q 002196 595 GLGKRS---------VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (954)
Q Consensus 595 ~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 665 (954)
...... +..-....++ .++.++.++.+.-+|+.+++.+.... . ..+.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCCE
Confidence 643211 1122222234 77777777754344999999765333 1 12222 13456778888889999
Q ss_pred EEEEEccCCCeeE
Q 002196 666 IKILANADGIRLL 678 (954)
Q Consensus 666 i~iwd~~~~~~~~ 678 (954)
+..||+.+++...
T Consensus 224 l~~~d~~tG~~~W 236 (238)
T PF13360_consen 224 LYALDLKTGKVVW 236 (238)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCCEEe
Confidence 9999999995443
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=92.89 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=123.6
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
.++|+-+-.-+-++.+.+-.|-+-|+++|-... + ..++.|.++.|...++++..|..+|
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRng 274 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNG 274 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCC
Confidence 336664432233444556778899998875432 2 2668899999999999999999999
Q ss_pred EEEEEEeeCCcc--eeeeeeeecccCCEEEEEEec-CCCceEEEEEcCCCeEEEEECCCCce---EEEeccCCCCeEEEe
Q 002196 441 IVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSIC 514 (954)
Q Consensus 441 ~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~ 514 (954)
.|..+|++.+.. ..+. ..--|...|+++.... +++ +|++.+.+|.|++||.+--++ +..+.||...-.-+-
T Consensus 275 eI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~ 351 (425)
T KOG2695|consen 275 EIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP 351 (425)
T ss_pred cEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccc
Confidence 999999986521 1111 2334899999998877 455 789999999999999987776 889999977665555
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 550 (954)
++-++....+++++.|...++|.++.+.........
T Consensus 352 ~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 352 AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 555555578999999999999999987766655443
No 310
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.4e-07 Score=89.16 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCC--------ccHHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHH
Q 002196 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFF--------FNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (954)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (954)
++-+-|+|..||..+||.++|..|-++|.+. .++..++++|++|+...|+...+.-...-. +....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 4557899999999999999999999999875 237789999999999999887765411111 1222378999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccccchhhcccCCChhHHHHHHH--HHHhhcccC
Q 002196 77 RKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLA--ELKKLIEAN 154 (954)
Q Consensus 77 ~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~l~~--~l~~~~~~~ 154 (954)
+.|.|+||+..+++.+|+.+.++.+.|....+.++++....++.++.......+. ......|=..+. -++.+.+-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~--~l~~~~rw~~l~~lF~s~a~~l- 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYL--NLLTADRWSVLADLFLSEALKL- 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccccc--CcccHHHHHHHHHHhhHHHHHH-
Confidence 9999999999999999999999999999887889999999998886554333211 112333433333 22222221
Q ss_pred ccccccccCCCCchHHHHHHHHHHHHHHH-hhcCCC
Q 002196 155 PLFRDKLQFPSLKNSRLRTLINQSLNWQH-QLCKNP 189 (954)
Q Consensus 155 ~~~~~~~~~~~~p~~rL~~ll~~~~~~q~-~~~~~~ 189 (954)
+.+|+-| +|..+|+-.|..|+ ..|...
T Consensus 271 ------~~i~~~~--~L~~~l~~GLsalKTp~c~~~ 298 (389)
T KOG0396|consen 271 ------FGIPINP--ALTIYLQAGLSALKTPRCLND 298 (389)
T ss_pred ------hCCCCCc--HHHHHHHhhhhhccccccccc
Confidence 2233222 58888887777773 346544
No 311
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.56 E-value=6e-05 Score=81.60 Aligned_cols=299 Identities=11% Similarity=0.054 Sum_probs=153.6
Q ss_pred CCCCCEEEEEEeCC-----CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeE
Q 002196 560 SADGARLFSCGTNK-----EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (954)
Q Consensus 560 s~~g~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (954)
|||+++++...... +....+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57888777643210 1133488999999876554443 22678899999999998886 5789999988774433
Q ss_pred EEecCCC----------------CCCcceEEECCCCCEEEEEeCC-CcEEEEEcc---CCCe---eEEEeccccccceec
Q 002196 635 SIDADGG----------------LQASPCIRFNKEGILLAVSTND-NGIKILANA---DGIR---LLRTVESRTFDASRV 691 (954)
Q Consensus 635 ~~~~~~~----------------~~~v~~v~~s~~~~~l~s~~~d-g~i~iwd~~---~~~~---~~~~~~~~~~~v~~~ 691 (954)
+...+. ...-..+.|||||++||....| ..|..+.+. .... ....+.-
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~Y-------- 148 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRY-------- 148 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccccc--------
Confidence 222210 1234678999999998876543 444444332 1111 1111100
Q ss_pred chhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccc--cccccccccccCCCceeEEe
Q 002196 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE--KSRIWKLTEITEPSQCRSLR 769 (954)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~--~i~iw~~~~~~~~~~~~~~~ 769 (954)
=..|+.+- .+.++++.+.... .+.
T Consensus 149 --------------------------------------------------Pk~G~~np~v~l~v~~~~~~~~~----~~~ 174 (353)
T PF00930_consen 149 --------------------------------------------------PKAGDPNPRVSLFVVDLASGKTT----ELD 174 (353)
T ss_dssp ---------------------------------------------------BTTS---EEEEEEEESSSTCCC----EE-
T ss_pred --------------------------------------------------CCCCCcCCceEEEEEECCCCcEE----Eee
Confidence 00111111 3344454332111 222
Q ss_pred cC--CCCCccceEEEEEecCCceEEEeecC---CeEEEeeccCCCCCCCCcccCCCCccccCCCCccccccc-CCCCCCC
Q 002196 770 LP--DNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND-ISDTNPE 843 (954)
Q Consensus 770 ~~--~~~~~~~v~~~~~spdg~~l~~~~~d---g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~ 843 (954)
.+ ......-+..+.|++++..+++...+ ....+..+ |..++...... ....+--
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~--------------------d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC--------------------DASTGETRVVLEETSDGWV 234 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE--------------------EECTTTCEEEEEEESSSSS
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE--------------------ECCCCceeEEEEecCCcce
Confidence 11 01235678899999999855444332 33333322 22222211000 0000011
Q ss_pred CCccEEEec-cCCCeEEEec--CC--eEEEEEcccccEEEeeCCCCCCeeE-EEecCCCCceEEEEecCc----cEEEEe
Q 002196 844 DAVPCFALS-KNDSYVMSAS--GG--KISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMEDS----SIQIYN 913 (954)
Q Consensus 844 ~~v~~~~~s-~dg~~la~~s--dg--~i~iwd~~~~~~~~~~~~h~~~v~~-l~~sp~d~~~lasgs~dg----~i~iwd 913 (954)
..-....|. +++..++..+ +| .|.+++..++. .+.+....-.|+. +.+++.++.+.+++..++ .++.-+
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 223355665 7777666554 55 47777776655 4455545556755 778884455556666543 454555
Q ss_pred ccccceEEEecCCccceeEEEEecCCCeEEEe
Q 002196 914 VRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (954)
Q Consensus 914 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 945 (954)
+.++..+..+......-..+.|||||++++-.
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 55344566666544444689999999987643
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2e-05 Score=79.49 Aligned_cols=249 Identities=11% Similarity=0.095 Sum_probs=148.7
Q ss_pred ccCCCCCCeEEEEEccCCC-EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 413 LSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
++.+|...|..++|||..+ ++..++.+.+|+|.|+++...+. .+..| ..+++++|.-|... ++..|...|.|.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 4678999999999999776 78889999999999999976655 55566 78999999999877 7999999999999
Q ss_pred EECCCCc-eEEEecc--CCCCeEEEeeeccC----CccEEEEEecCCeEEEEeCCCCC--ceeEeeC-CCCceEEEEECC
Q 002196 492 WDAVTGT-KQYIFEG--HESPVYSICPHHKE----NIQFIFSTATDGKIKAWLYDNLG--SRVDYDA-PGHSSTMMAYSA 561 (954)
Q Consensus 492 wd~~~~~-~~~~~~~--~~~~v~~~~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-~~~~v~~~~~s~ 561 (954)
||++..+ .+..+.+ ...+|..++.-+.. .|.+++..+.+ ...|.+.... ....... ..+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 9998643 2222222 23344444322111 11344444433 3356543222 1222222 233556667777
Q ss_pred CCCEEEEEEeCCCCceEEE----EEeCCCCeEEEEEec-C---CCCCe---EEEEEeCCCCEEEEE-ECCCeEEEEECCC
Q 002196 562 DGARLFSCGTNKEGESYLV----EWNESEGAVKRTYHG-L---GKRSV---GVVQFDTTKNRFLAA-GDEFMIKFWDMDN 629 (954)
Q Consensus 562 ~g~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~~-~---~~~~i---~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 629 (954)
..++++.....+.....++ --|..+|..+...+. + ..... ..+.-.++.++++.. +..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6676666554322111111 123334433322211 1 00001 112223455555554 4667899999999
Q ss_pred CceeEEEecCCCCCCcceEEECC-C-CCEEEEEeCCCcEEEEEcc
Q 002196 630 VNLLASIDADGGLQASPCIRFNK-E-GILLAVSTNDNGIKILANA 672 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~s~~~dg~i~iwd~~ 672 (954)
++.++.+... .+|..+.... + +.+|+.-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999999764 3566666544 3 34666555 5578887654
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.55 E-value=4.4e-07 Score=87.54 Aligned_cols=107 Identities=16% Similarity=0.269 Sum_probs=80.5
Q ss_pred CCCCCCccEEEeccCCCeEEEecCCeEEEEEcccc---cEEEeeCCCC-----CCeeEEEecCCCCceEEEEecCccEEE
Q 002196 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF---KTMTTFMPPP-----PAATFLAFHPQDNNIIAIGMEDSSIQI 911 (954)
Q Consensus 840 ~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~---~~~~~~~~h~-----~~v~~l~~sp~d~~~lasgs~dg~i~i 911 (954)
.+|...+.++.|..|...+.++.|-.|.+|++.-- -.+..++.|. ..|++..|+|.....+...+..|.|++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 45888999999999999999999999999997532 2233345554 348999999977788888999999999
Q ss_pred Eeccccce------E----------EEecCCccceeEEEEecCCCeEEEec
Q 002196 912 YNVRVDEV------K----------TKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 912 wd~~~~~~------~----------~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
-|++...+ + .-+.+-...|..+.||++|+++++-+
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 99984211 0 11122335688899999999998654
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.54 E-value=0.00015 Score=78.51 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=134.6
Q ss_pred cCCCCeEEEEE--------EcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 365 HPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 365 sp~g~~ll~~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
|||++++|+.. +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 67888666532 123578999999876553 22225788999999999999988
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeec-------c---------cCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEA-------H---------VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
.++.|.+++..++...+. +..+ - -+.-..+.||||++++ ++.--.+..|..+.+.
T Consensus 61 -~~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l-a~~~~d~~~v~~~~~~----- 131 (353)
T PF00930_consen 61 -RDNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL-AFLRFDEREVPEYPLP----- 131 (353)
T ss_dssp -ETTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE-EEEEEE-TTS-EEEEE-----
T ss_pred -ecCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEE-EEEEECCcCCceEEee-----
Confidence 467899998877643321 1122 0 1223578899999963 3333334444444321
Q ss_pred EEeccCCC---CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee-Ee----eCCCCceEEEEECCCCCEEEEEEeC
Q 002196 501 YIFEGHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DY----DAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 501 ~~~~~~~~---~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~----~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
.+..... .+..+.+-..++ -.. .-.+.++|+.+++... .. ......+..+.|.++++.++..-.+
T Consensus 132 -~~~~~~~~yp~~~~~~YPk~G~--~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n 204 (353)
T PF00930_consen 132 -DYSPPDSQYPEVESIRYPKAGD--PNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN 204 (353)
T ss_dssp -EESSSTESS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -ccCCccccCCcccccccCCCCC--cCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence 1111111 233333211111 110 1135567877665432 21 2234478899999999955555544
Q ss_pred CC-CceEEEEEeCCCCeEEEEEecCCCCCe---EEEEEe-CCCCEEEEEE-CCC--eEEEEECCCCceeEEEecCCCCCC
Q 002196 573 KE-GESYLVEWNESEGAVKRTYHGLGKRSV---GVVQFD-TTKNRFLAAG-DEF--MIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 573 ~~-~~~~i~iwd~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
+. ....+.+.|..++.............+ ....+. +++..++..+ .+| .|++++...+... .+. .+.-.
T Consensus 205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT--~G~~~ 281 (353)
T PF00930_consen 205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT--SGDWE 281 (353)
T ss_dssp TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---SSS-
T ss_pred cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc--cCcee
Confidence 43 344677889887755433333222222 244554 6666555544 666 5666666665533 332 22334
Q ss_pred cc-eEEECCCCCEEEE
Q 002196 645 SP-CIRFNKEGILLAV 659 (954)
Q Consensus 645 v~-~v~~s~~~~~l~s 659 (954)
|. -+.|+++++.|..
T Consensus 282 V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYF 297 (353)
T ss_dssp EEEEEEEECTSSEEEE
T ss_pred ecccceEcCCCCEEEE
Confidence 53 3566776665543
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.3e-06 Score=84.04 Aligned_cols=320 Identities=11% Similarity=0.121 Sum_probs=190.4
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC-CC--ceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LG--SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
|...|+.+..... +++++++.||.++.|--.. .. -...+..|...+.+++.+.+|..+.+++. .+..++++
T Consensus 8 hrd~i~hv~~tka---~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d---~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTKA---KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED---PDHSVKVF 81 (558)
T ss_pred ccceeeeEeeehh---heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC---cccceeEE
Confidence 6777777765433 6999999999999996432 11 11223445557788888999988887653 23348888
Q ss_pred eCCCCeEEEEEecCCCCCeEEEEE-eCCC---CEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 583 NESEGAVKRTYHGLGKRSVGVVQF-DTTK---NRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 583 d~~~~~~~~~~~~~~~~~i~~~~~-~~~~---~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
|+.+-..+..++...- ...+.| ...| ..++++. .+|.+.++|-....+.......-|..+|.++.+++.+..+
T Consensus 82 DvEn~DminmiKL~~l--Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDL--PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EeeccchhhhcccccC--CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 8876655433322211 111222 2222 1333333 7899999997765433333333447799999999999999
Q ss_pred EEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCC
Q 002196 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT 737 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (954)
++....|.|.-|..... .+..+. .+. |...
T Consensus 160 vSiD~~gmVEyWs~e~~---~qfPr~---~l~---------------------------------------~~~K----- 189 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGP---FQFPRT---NLN---------------------------------------FELK----- 189 (558)
T ss_pred eeccccceeEeecCCCc---ccCccc---ccc---------------------------------------cccc-----
Confidence 99988999999987531 110000 000 0000
Q ss_pred CCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCC----
Q 002196 738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST---- 813 (954)
Q Consensus 738 ~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~---- 813 (954)
..-.+|.... ......++.|+|+|..+.+.+.|..|+++.+.++..-..
T Consensus 190 -----------~eTdLy~f~K----------------~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 190 -----------HETDLYGFPK----------------AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred -----------ccchhhcccc----------------cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 0011122111 345678899999999999999999999999877622110
Q ss_pred ---CcccCCCCccccCCCCccccccc--CCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCC----
Q 002196 814 ---GKATTNQAPQLWQPPSGILMTND--ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPP---- 884 (954)
Q Consensus 814 ---g~~~~~~~i~l~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~---- 884 (954)
..........+-++.=++.+... +.. .....-+.++|...|++|..++-=.|++.++.++.+.+.+-...
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek-~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~ 321 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEK-HGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRF 321 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhh-hcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhh
Confidence 00000001122222222221111 111 02234567789999999999986668999999888877653210
Q ss_pred --------------CC-------eeEEEecCCCCceEEEEecCccEEEE
Q 002196 885 --------------PA-------ATFLAFHPQDNNIIAIGMEDSSIQIY 912 (954)
Q Consensus 885 --------------~~-------v~~l~~sp~d~~~lasgs~dg~i~iw 912 (954)
.. =..+.+.+ |..+++++-....++++
T Consensus 322 ~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 322 TRLSLYQGAQKSNLAALEVAASNNPLLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhHHHHhhhhhccchhhhhhhccCcccccCC-CCeEEEeeeecceEEEE
Confidence 00 01233666 77788888888888887
No 316
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.50 E-value=0.00067 Score=70.69 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=143.1
Q ss_pred EEEcCCCCeEEEEEEcCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCC-CCeEEEEEccCCCEEEEEEc
Q 002196 362 MDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYS 438 (954)
Q Consensus 362 ~~~sp~g~~ll~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~~~ 438 (954)
=+|.+||++||+++..+| .+.+.|+.+++..+ ++... .......++|+++.++-...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 367899998999888776 57777888887665 23322 22334677898898877767
Q ss_pred CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec--CCCceEEEEEc----------------------CCCeEEEEEC
Q 002196 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCG----------------------EDRVIKVWDA 494 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~----------------------~dg~i~iwd~ 494 (954)
+..|+-.|+++.+... .+......+-...|.. |+. .++..- ....|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7788888988876432 3444555565566653 344 222211 1234556678
Q ss_pred CCCceEEEeccCCCCeEEEeeeccCCccEEEEEec---CCe-EEEEeCCCCCceeE--ee-CCCCceEEEEECCCCCEEE
Q 002196 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGK-IKAWLYDNLGSRVD--YD-APGHSSTMMAYSADGARLF 567 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~-i~iwd~~~~~~~~~--~~-~~~~~v~~~~~s~~g~~l~ 567 (954)
.+|+....+. -...+..+.|+|..+ ..|..|-+ +.. -++|-+++...... .. .....+.-=-|.|||..+.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8877655554 455677788888664 45555432 221 36676655433221 11 1222455567999999887
Q ss_pred EEEe-CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC----------------eEEEEECCCC
Q 002196 568 SCGT-NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF----------------MIKFWDMDNV 630 (954)
Q Consensus 568 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~ 630 (954)
..+. .+..+..|.-+|+.+++........ .......++||++++-=+.|. -|+++++..+
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 7554 3333667888999988654433321 334455678888776544332 5677888776
Q ss_pred ceeEEEecC------C--CCCCcceEEECCCCCEEEEEe-CCCcEEEEEc
Q 002196 631 NLLASIDAD------G--GLQASPCIRFNKEGILLAVST-NDNGIKILAN 671 (954)
Q Consensus 631 ~~~~~~~~~------~--~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~ 671 (954)
......... . ....-....|+|||++++..| ..|...||-+
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 654222210 0 011224689999999866554 4677666644
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.48 E-value=9.2e-05 Score=75.41 Aligned_cols=284 Identities=8% Similarity=0.083 Sum_probs=158.1
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE----------CCCeEEEEECCCCceeEEEecCCC-----C
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGG-----L 642 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-----~ 642 (954)
.++++|..+++.+-.+... ....+.++|+++.+++++ ..-.|.+||..+-.+...+..+.. .
T Consensus 18 rv~viD~d~~k~lGmi~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCCcEEEEeecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4899999999988877764 334567899999998754 234799999999988887765532 1
Q ss_pred CCcceEEECCCCCEEEEEe--CCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccc
Q 002196 643 QASPCIRFNKEGILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720 (954)
Q Consensus 643 ~~v~~v~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (954)
......+++.||+++++.. -...|.|-|+..+ +.+..+........-
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~iy------------------------------ 143 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWLIY------------------------------ 143 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEEEE------------------------------
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEEEE------------------------------
Confidence 2234567777887766543 2356777777766 555555433221100
Q ss_pred cccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeE
Q 002196 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVH 800 (954)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v 800 (954)
| ...+.+.+-..||.+....+....+...... ..-.......+..-+++.++..++..+-+|.|
T Consensus 144 ----------P-----~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v 207 (342)
T PF06433_consen 144 ----------P-----SGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNV 207 (342)
T ss_dssp ----------E-----EETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEE
T ss_pred ----------e-----cCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEEEecCCEE
Confidence 0 0012244445556666655553222221111 11111122223344555555556667777777
Q ss_pred EEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec---------C--CeEEEE
Q 002196 801 KLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS---------G--GKISLF 869 (954)
Q Consensus 801 ~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s---------d--g~i~iw 869 (954)
+--++....... ..-|...+........ ..+.-.-+++++..+.|.+.- | ..|.++
T Consensus 208 ~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 208 YSADLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp EEEEETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred EEEeccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 776665432110 1112222111100000 112333467777665555431 1 249999
Q ss_pred EcccccEEEeeCCCCCCeeEEEecCCCCceEEEEe-cCccEEEEeccccceEEEecC
Q 002196 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRVDEVKTKLKG 925 (954)
Q Consensus 870 d~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs-~dg~i~iwd~~~~~~~~~~~~ 925 (954)
|+++++.+.++.. ..++.+|..+.++..+|.+.+ .++.+.+||..+|+.+.++..
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999999999873 346889999995555776554 578999999999999998874
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.8e-05 Score=86.80 Aligned_cols=341 Identities=15% Similarity=0.143 Sum_probs=190.3
Q ss_pred eEEEEEccCCCEEEEEEc----CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 421 VNRVMWSPDGTLFGVAYS----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 421 V~~l~~spdg~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
-+-..|+|...++|+++. .|.|.||- ++|++.+.. +.+- .+++++|+|..- +|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 344578999999988863 58888884 556543321 2222 367799999766 688999999999999888
Q ss_pred CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC----C--ceEEEEECCCCCEEE---
Q 002196 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG----H--SSTMMAYSADGARLF--- 567 (954)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~--~v~~~~~s~~g~~l~--- 567 (954)
.+.......|..+|..+.|++++ ..++++..-|.+.+|.++..+.......-. . ...+...++++.-++
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 77777777899999999998776 799999999999999877443332211111 1 234555566643211
Q ss_pred --EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 568 --SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 568 --~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
+.+.|.++-....-|..++.. +.. . -.-.|+|..++.++.+|+|+-.|- +|......... .-
T Consensus 169 KaaVtgDe~alD~~fnwk~~~a~--rs~--------~-ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~d----S~ 232 (1416)
T KOG3617|consen 169 KAAVTGDESALDEPFNWKESLAE--RSD--------E-KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLD----SE 232 (1416)
T ss_pred hhhccCchhhhcccccCccchhh--ccc--------c-ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEcc----ch
Confidence 111111111111122211100 000 0 012478889999999999988874 45555555432 11
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEc-cCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccc
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILAN-ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (954)
..+-|.+...-+.+...+-++.++-+ .+| ....+-.+.. .|.. +.+
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~~v~~~G---------~~ee~~~vk~-----------sgk~--------Ggr----- 279 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLIFVLAKG---------TSEERCAVKV-----------SGKL--------GGR----- 279 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEEEecCCC---------chHHhhhhhh-----------cccc--------CCc-----
Confidence 33455554444443333333333322 122 0000000000 0000 000
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
.| .++++...|.++ -. ...+......+.+++++.-+.+|..+...|.+.+|.
T Consensus 280 -------------qG-giA~sEssGvLr---~~-----------eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 280 -------------QG-GIACSESSGVLR---KS-----------EKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred -------------cC-cccccccccccc---CC-----------cchhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 00 122222222111 00 000111356799999999999999999999999995
Q ss_pred ccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec
Q 002196 805 WPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS 862 (954)
Q Consensus 805 ~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s 862 (954)
=... ....+.++..|.+.+... ..+.|+.+.|+|-...+|..+
T Consensus 332 ~v~~------~f~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 332 DVNK------GFQGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred ecCc------cccCCCCcceEEecCchh---------hccceEEEEeccccchhhhhh
Confidence 2211 122233556666555433 346788999998666665554
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=4.3e-07 Score=62.01 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=37.0
Q ss_pred ccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEe
Q 002196 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (954)
Q Consensus 874 ~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd 913 (954)
|+++.++.+|.+.|++|+|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=0.0001 Score=85.13 Aligned_cols=278 Identities=12% Similarity=0.169 Sum_probs=158.7
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
.+.|.++.|.-++. -++.+..+|.|.+-|..+..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 35899999999998 56777889999999888876543 2335689999999999999999
Q ss_pred EEcCCEEEEEEeeCCcceeeeeeeec---ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeE
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEIEA---HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVY 511 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~ 511 (954)
.+..+++.+-+. +...+... .+.. ..+....+-|-....+ +-|+. |....-+.... +......-+ +.=.
T Consensus 127 iT~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs~-gr~~~~~~~~~ek~~~~~~~~-~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGSE-GRQAARQKIEKEKALEQIEQD-DHKT 199 (1265)
T ss_pred EeCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecch-hhhcccccccccccccchhhc-cCCc
Confidence 988888766542 22222111 1100 1112223334322221 11111 11111110000 000000111 1123
Q ss_pred EEeeeccCCccEEEEE-----ecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 512 SICPHHKENIQFIFST-----ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
+++| .++|+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.+|.. +
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffEr-N 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFER-N 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEec-C
Confidence 4555 4666888873 223789999866 2222222222334568999999999998876544 446888863 3
Q ss_pred CeEEE----EEecCCCCCeEEEEEeCCCCEEEE---EECCCeEEEEECCCCcee--EEEecCCCCCCcceEEECCCC-CE
Q 002196 587 GAVKR----TYHGLGKRSVGVVQFDTTKNRFLA---AGDEFMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKEG-IL 656 (954)
Q Consensus 587 ~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~-~~ 656 (954)
|-.-. .+..... .+..++|+.++..|++ ......|++|-..+.... +.+... ...-+.|+|.. ..
T Consensus 275 GL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~----~~~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS----QKALLMWDPVTEKT 349 (1265)
T ss_pred CccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc----ccccccccCCCcee
Confidence 32222 2222222 4889999999998888 445566999999886533 333322 12228898833 33
Q ss_pred EEEEeCCCcEEEEEc
Q 002196 657 LAVSTNDNGIKILAN 671 (954)
Q Consensus 657 l~s~~~dg~i~iwd~ 671 (954)
|.+-..+|...++++
T Consensus 350 L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEecCCcEEEEEE
Confidence 444446777666654
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=8.8e-07 Score=87.02 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=122.2
Q ss_pred EEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC----Cc
Q 002196 468 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL----GS 543 (954)
Q Consensus 468 ~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~ 543 (954)
.++|+-+-.- +-++.+.+..|-+-|+.+|... .|. ..+.|.++.|.... .+++.|+.+|.|..+|++.. ..
T Consensus 216 ~CawSlni~g-yhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 216 SCAWSLNIMG-YHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhccce-eeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCc
Confidence 3467644332 2366777888999998887543 333 56778888887655 69999999999999999876 33
Q ss_pred eeEeeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCCCeE---EEEEecCCCCCe-EEEEEeCCCCEEEEEEC
Q 002196 544 RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSV-GVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~ 618 (954)
......|+..|+++..-. ++++|++.+.++. |.+||.+.-++ +.++.+|-.... .-+-+.+....++++|.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk----ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDMTGK----IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccCcCc----eeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 444455777888887766 7788888777554 99999987666 889999854221 12345677789999999
Q ss_pred CCeEEEEECCCCceeEEEecC
Q 002196 619 EFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~ 639 (954)
|...+||.++.|.++.+++..
T Consensus 367 DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeEEEEEecccCceeeccCCC
Confidence 999999999999999998765
No 322
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.42 E-value=0.0081 Score=68.55 Aligned_cols=544 Identities=11% Similarity=0.086 Sum_probs=251.7
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC---
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--- 429 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--- 429 (954)
++..+-..|+..-++| +|.+|+.-|.=.+-.+.+........ . ... .+ ..-++|..++.-.+
T Consensus 303 lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~-~---------ile--t~-~NLgPI~Dm~Vvd~d~q 367 (1096)
T KOG1897|consen 303 LGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV-V---------ILE--TF-VNLGPIVDMCVVDLDRQ 367 (1096)
T ss_pred cCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh-h---------hhh--hc-ccccceeeEEEEecccc
Confidence 4455556777777777 67888887765555554432211000 0 000 01 12357877776552
Q ss_pred -CCEEEEEE---cCCEEEEEEeeCCcceeeeeeeecccCCEEEEE--EecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 430 -GTLFGVAY---SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 430 -g~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
+..+++++ .||+++|..-.-+-.......+.| -..++.+. +.++-.. +++.+-.+ .-++..+...-.....
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~ 444 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETED 444 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecc
Confidence 23566554 478999986433321111223445 34577777 5544333 34443332 3334443322111122
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
.+.......+..+.-. ++.++-.. ...|++++-. .....+... ..++....+.+...++.++.+ ..+...+
T Consensus 445 ~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~----~~l~y~~ 515 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGG----LALFYLE 515 (1096)
T ss_pred ccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCc----cEEEEEE
Confidence 2222333333332221 12222222 2446666533 122222222 233333344444455555432 2255555
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCC------CEEEEEECCCeE-EEEECCCCceeEEE--ecCCCCCCcceEEECCCC
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTK------NRFLAAGDEFMI-KFWDMDNVNLLASI--DADGGLQASPCIRFNKEG 654 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~dg~i-~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~ 654 (954)
+..+......+..-...|.|+.++|-| ++++.|..+..+ .+.-..+...+... ....-...|--..+-.|.
T Consensus 516 i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 516 IEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 555543333332233478888888753 266777644433 33333343333322 222112234445555568
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecc---hhccc--------cCCccccccCCCCCcccccccccccc
Q 002196 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA---SAAIV--------KAPAIGTFGSANANVGTSLGERTAPA 723 (954)
Q Consensus 655 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (954)
.+|.++..||.+.-+.+....-.....+...-...... +.... ..|..-.....-.-++|-.+.. .
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke---v 672 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE---V 672 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH---h
Confidence 89999999999887765433112111110000000000 00000 0000000000000000000000 0
Q ss_pred ccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEe
Q 002196 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (954)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw 803 (954)
..+..|+.+ +-...++++. .+.+++..++...+... +. .|. ....+.+++.+....+.+.+.......=
T Consensus 673 ~~~c~f~s~----a~~d~l~~~~-~~~l~i~tid~iqkl~i-rt--vpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 673 NHMCPFNSD----AYPDSLASAN-GGALTIGTIDEIQKLHI-RT--VPL---GESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred hhhcccccc----cCCceEEEec-CCceEEEEecchhhcce-ee--ecC---CCChhheEecccceEEEEEecccccchh
Confidence 001111111 1112233333 35666666654332221 11 222 3456677887755555554443221110
Q ss_pred eccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCC---ccEEEeccC-CCeEEEec-----------CCeEEE
Q 002196 804 KWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDA---VPCFALSKN-DSYVMSAS-----------GGKISL 868 (954)
Q Consensus 804 ~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~d-g~~la~~s-----------dg~i~i 868 (954)
..+.......++++|.++-+.+...--. .... +.++.|..| +.++++|. .|.|.|
T Consensus 742 --------~~~ee~~~s~l~vlD~nTf~vl~~hef~--~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIiv 811 (1096)
T KOG1897|consen 742 --------YYGEEYEVSFLRVLDQNTFEVLSSHEFE--RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIV 811 (1096)
T ss_pred --------hcCCcceEEEEEEecCCceeEEeecccc--ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEE
Confidence 0011111224566777776654321111 2233 334447777 78888772 277888
Q ss_pred EEcccccEEEeeCCC--CCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEec
Q 002196 869 FNMMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 869 wd~~~~~~~~~~~~h--~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
|....+..+.....+ .+.+.++..- +|++||. -...|++|++.+.+.++.-..|..++..+...-.|..++.|.
T Consensus 812 fe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 812 FEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 888763333333212 3445555443 5777764 356799999999877777777888899999888888888887
Q ss_pred CCcce
Q 002196 947 ADSQV 951 (954)
Q Consensus 947 ~Dg~I 951 (954)
-=++|
T Consensus 888 lm~Si 892 (1096)
T KOG1897|consen 888 LMRSI 892 (1096)
T ss_pred ccceE
Confidence 55444
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=0.0013 Score=62.76 Aligned_cols=150 Identities=8% Similarity=-0.020 Sum_probs=101.5
Q ss_pred EEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC
Q 002196 470 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 549 (954)
Q Consensus 470 ~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 549 (954)
...+|.+. +++.|+..+.+.--|..+|+.+..-. -...+.+-+.- -+ ++++.|+..|.+++.+.+++.....+..
T Consensus 17 VV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 17 VVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred EEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeeee
Confidence 34456665 68999999999999999998776432 22334332222 13 5799999999999999999877776655
Q ss_pred CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 550 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
.+.--......+++..+..++.|+. .+..|.++...+.+.+.... ...+-++.|....|+.+...|.+.--..+.
T Consensus 92 ~~~vk~~a~~d~~~glIycgshd~~----~yalD~~~~~cVykskcgG~-~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 92 LETVKVRAQCDFDGGLIYCGSHDGN----FYALDPKTYGCVYKSKCGGG-TFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred hhhhccceEEcCCCceEEEecCCCc----EEEecccccceEEecccCCc-eeccceecCCCceEEEEeccceEEEEccCC
Confidence 4432334556789999999987654 89999999888887665433 333445666444555555556555444443
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.39 E-value=0.0013 Score=67.21 Aligned_cols=270 Identities=19% Similarity=0.213 Sum_probs=161.2
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE----------cCCEEEEEEee
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY----------SKHIVHLYTYH 448 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~----------~dg~i~iwd~~ 448 (954)
+.+.|+|..+++.+.... .+-.-.+..|||++.+++++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi~---------------------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID---------------------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEEE---------------------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEee---------------------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 468999999888765311 12333477899999988763 23469999998
Q ss_pred CCcceeeeeeeec-cc----CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccE
Q 002196 449 GGDELRNHLEIEA-HV----GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523 (954)
Q Consensus 449 ~~~~~~~~~~~~~-h~----~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 523 (954)
+-.....+ .+.. |. .....++++.|++.+++.=.+--.+|.|-|+..++.+.++... .+..+ .|.++ .-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCC-Cc
Confidence 86654433 2322 11 1234578999999766666777889999999999988877632 12222 34444 45
Q ss_pred EEEEecCCeEEEEeCCCCCceeE-----eeCCCCc-eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE--EEEEec
Q 002196 524 IFSTATDGKIKAWLYDNLGSRVD-----YDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHG 595 (954)
Q Consensus 524 l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~ 595 (954)
+.+-|.||.+....++..+.... +.....+ +..-+++..+..++..+.+| .|+-.|+..... ...+..
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEES
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC----EEEEEeccCCcccccCcccc
Confidence 88899999999998885544332 1111111 22333444444444344322 366666554432 222211
Q ss_pred CC------C---CCeEEEEEeCCCCEEEEEE---CCC-------eEEEEECCCCceeEEEecCCCCCCcceEEECCCCC-
Q 002196 596 LG------K---RSVGVVQFDTTKNRFLAAG---DEF-------MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI- 655 (954)
Q Consensus 596 ~~------~---~~i~~~~~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 655 (954)
.. + ....-+++++..+.|++.- .+| .|.++|+.+++.+..+... ..+.++..+.+.+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKP 302 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCc
Confidence 10 0 1233467877666666532 121 5888899999999999863 2577999998665
Q ss_pred EEEEEe-CCCcEEEEEccCCCeeEEEecc
Q 002196 656 LLAVST-NDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 656 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
+|++.+ .++.+.+||..++ +.++.+..
T Consensus 303 ~L~~~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCC-cEEeehhc
Confidence 565444 5789999999999 77776654
No 325
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.36 E-value=1.9e-06 Score=79.69 Aligned_cols=134 Identities=20% Similarity=0.230 Sum_probs=97.1
Q ss_pred HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHH
Q 002196 38 MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQ 117 (954)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (954)
...++++|++|+++.|+..+......-... ...+.|.|+.|+|+|++..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998772111111 1238999999999999999999999999999887655435577888888
Q ss_pred hhccccccc--chhhcccCCChhHHHHHHHHHHhhcccCccccccccCCCCc-hHHHHHHHHHHHHHH
Q 002196 118 LLTLENFRD--NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLK-NSRLRTLINQSLNWQ 182 (954)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~~~~~~q 182 (954)
+|..+.... ..++...- ....|.+|.+.+.+.+-...- +| .+.|..++.+....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 887766554 22333222 236789999998887654221 33 467888888776544
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.34 E-value=2e-05 Score=87.56 Aligned_cols=183 Identities=8% Similarity=0.087 Sum_probs=126.5
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 508 (954)
++..++-|+-...+..+|+.+.+..+ ...-..+.|+-|+. +++ ++.+|...|+|.+-|.++.+.++++.+|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45567777777788889998876554 22223334555554 456 699999999999999999999999999999
Q ss_pred CeEEEeeeccCCccEEEEEec---------CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCC-CEEEEEEeCCCCceE
Q 002196 509 PVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESY 578 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~ 578 (954)
.|.++... + +.|++++. |..|++||++......-+..+.++ .-+.|.|.- ..+++++..+ .
T Consensus 219 siSDfDv~--G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG----q 289 (1118)
T KOG1275|consen 219 SISDFDVQ--G--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG----Q 289 (1118)
T ss_pred ceeeeecc--C--CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccc----c
Confidence 99988654 3 67888875 456899999987766544443332 345566652 3455555433 2
Q ss_pred EEEEe---CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002196 579 LVEWN---ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 579 i~iwd---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (954)
..+-| +.+...-.......+..+..++++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 66666 22221111122222325889999999999999999999999973
No 327
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.33 E-value=1e-05 Score=76.60 Aligned_cols=200 Identities=11% Similarity=0.063 Sum_probs=112.6
Q ss_pred EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE------------EEeccCCCCeEEEeeeccCCccEEEEEecCCeE
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ------------YIFEGHESPVYSICPHHKENIQFIFSTATDGKI 533 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (954)
++.+.++.+. .|+++..++.+......++.+. +.+..|.++-.+-+.+... ..++++..||.+
T Consensus 39 ~~~~~~v~~~---~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~ 113 (319)
T KOG4714|consen 39 LSKVSLSAEY---ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD--NRVCIGYADGSL 113 (319)
T ss_pred EEEeechhhh---eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC--CceEecCCCceE
Confidence 5556665443 3677777766666554444332 2333333322111111122 569999999999
Q ss_pred EEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEEEeCC-CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC
Q 002196 534 KAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (954)
Q Consensus 534 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 611 (954)
.+++.+....... .......-.+.++...+..+.+++... ......+.|+++..+....-..... .+.+++-+|..+
T Consensus 114 ~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq 192 (319)
T KOG4714|consen 114 AVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD-AVTALCSHPAQQ 192 (319)
T ss_pred EEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc-cchhhhCCcccc
Confidence 9998775222111 111111122333334555555543100 0011144555443222111111122 478888888665
Q ss_pred -EEEEEECCCeEEEEECCCCceeEE-EecCCCCCCcceEEECC-CCCEEEEEeCCCcEEEEEccC
Q 002196 612 -RFLAAGDEFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 612 -~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.+++|+.||.+-+||+++...... +..| +..++.+-|+| ++..|+++++||.+.-||..+
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah--k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVAMPVSLLKAH--KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cEEEEecCCCeEEEEEcccccchHHHHHHh--hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 555667999999999998743333 3333 66899999999 678899999999999999875
No 328
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.27 E-value=0.0011 Score=75.03 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=67.5
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCC------ce--EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------SS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~v--~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 593 (954)
..++.++.++.+...|..+++....+..... .+ ..+.+. ++..++.++. ++.++.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4677777788888888888777665543322 00 011111 2245666554 345999999999998887
Q ss_pred ecCCCC----CeE-EEEEeCCCCEEEEEE---------CCCeEEEEECCCCceeEEEec
Q 002196 594 HGLGKR----SVG-VVQFDTTKNRFLAAG---------DEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 594 ~~~~~~----~i~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 638 (954)
...... .+. +..+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 011 12222 24555554 368899999999999888765
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=1.8e-06 Score=58.90 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=35.2
Q ss_pred cceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 917 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|+++.++.+|.+.|++|+|+|++.+|+|++.|++|+|
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~v 37 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRV 37 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEE
Confidence 5788999999999999999999999999999999986
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00028 Score=76.94 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=101.6
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
+...|.--+++..++ +++.|+..|.+++|+-.+++....+ ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 455666667777777 7899999999999998888765421 223456677788899999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeee---eecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC----ceEEEeccCC
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLE---IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~ 507 (954)
.|+..|.|.|+-+..+........ -..|...|++++|++++. .+++|...|.|.+-.+.+. ...+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998876433221111 123778999999999999 5899999999998887762 1122333345
Q ss_pred CCeEEEeee
Q 002196 508 SPVYSICPH 516 (954)
Q Consensus 508 ~~v~~~~~~ 516 (954)
+.|..+...
T Consensus 171 s~IVQlD~~ 179 (726)
T KOG3621|consen 171 SEIVQLDYL 179 (726)
T ss_pred cceEEeecc
Confidence 666666543
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.22 E-value=0.00014 Score=83.97 Aligned_cols=243 Identities=10% Similarity=0.042 Sum_probs=142.0
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
...|.++.|--++..++.+..+|.|.+-|.++.... ....-...|.+++||||++ +++..+.++++.+-+ .+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT-~~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMT-KDF 140 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEe-ccc
Confidence 368999999999999999999999999988876432 2344567899999999999 566666666776544 322
Q ss_pred ceEEEeccCC-----CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 498 TKQYIFEGHE-----SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 498 ~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
.++..-.-+. +....+-|-... .-+-|+. |.....+................-++++|--||+++++....
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc---eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 2222111110 111112221110 1111111 111111100000000000011233579999999999885543
Q ss_pred C-CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE---CCCeEEEEECCCCceeEE--EecCCCCCCcc
Q 002196 573 K-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG---DEFMIKFWDMDNVNLLAS--IDADGGLQASP 646 (954)
Q Consensus 573 ~-~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~ 646 (954)
. .+...|++||-+ |.+-..-.... ..-.+++|-|.|..+++.. .|+.|.++..+. -.-.. +..+.....|.
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~-~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVE-GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCccc-ccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchh
Confidence 3 223679999966 44322222222 2445789999999998864 566898988543 22221 12222233489
Q ss_pred eEEECCCCCEEEE---EeCCCcEEEEEccCC
Q 002196 647 CIRFNKEGILLAV---STNDNGIKILANADG 674 (954)
Q Consensus 647 ~v~~s~~~~~l~s---~~~dg~i~iwd~~~~ 674 (954)
.++|+.++.+||+ ......|++|-+.+.
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCe
Confidence 9999999999988 445556999987764
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00018 Score=79.93 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=127.3
Q ss_pred EEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC-----eEEEEECCCC--
Q 002196 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTG-- 497 (954)
Q Consensus 425 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-----~i~iwd~~~~-- 497 (954)
+|++.+..++.|+.+|.|.+.+-. - .....+..+...+...-|.-+++. +|++.+.|+ .+++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~--~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--F--QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--c--eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 467899999999999977776532 2 211256666666444445545544 577766655 5999998643
Q ss_pred ----ceEE--Eecc-----CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC---CCCceeEee-CCCCceEEEEECCC
Q 002196 498 ----TKQY--IFEG-----HESPVYSICPHHKENIQFIFSTATDGKIKAWLYD---NLGSRVDYD-APGHSSTMMAYSAD 562 (954)
Q Consensus 498 ----~~~~--~~~~-----~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~-~~~~~v~~~~~s~~ 562 (954)
.++. .+.. ...++.+++++.+- +.+++|-.+|.|..+.-+ .......+. ....+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 1222 35667888888664 789999999999988532 112222222 23458999999999
Q ss_pred CCE-EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 002196 563 GAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 563 g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
++. +++++ ...|.+|.+....+......+++....|..+++....+++++. ..+.+|+.....+...+.
T Consensus 183 ~~s~lFv~T-----t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT-----TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe-----cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 887 34443 2238889887444344433444558888888876664665553 479999987655555554
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.20 E-value=3.5e-05 Score=82.60 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=94.7
Q ss_pred ceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEE----cCCe----EEEEeCCCCceeeeeeeEEEeccCCCcc
Q 002196 337 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGT----NMGD----VMLWEVGSRERIAVKSFKVWELGACSMP 408 (954)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~----~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 408 (954)
+..++.....-+++....-.....++.||-...+.+.+-. .+|. -.+|++..++.... .+
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv----------- 253 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV----------- 253 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE-----------
Confidence 3333333334456666666666788899875554444432 2343 34566554433221 11
Q ss_pred ccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe
Q 002196 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (954)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~ 488 (954)
..-.....|.|++++|+.+.|+.|+.||+|.+||...+... +....-..+.++|+|+|. ++++|+..|.
T Consensus 254 ----tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGe 322 (545)
T PF11768_consen 254 ----TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGE 322 (545)
T ss_pred ----EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCce
Confidence 12246789999999999999999999999999998776322 223445688999999999 8999999999
Q ss_pred EEEEECCCCc
Q 002196 489 IKVWDAVTGT 498 (954)
Q Consensus 489 i~iwd~~~~~ 498 (954)
+.+||+.-.-
T Consensus 323 lQ~FD~ALsp 332 (545)
T PF11768_consen 323 LQCFDMALSP 332 (545)
T ss_pred EEEEEeecCc
Confidence 9999976543
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00034 Score=77.85 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=129.6
Q ss_pred EEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCC-eEEEEEccCCCEEEEEEcCC-
Q 002196 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSPDGTLFGVAYSKH- 440 (954)
Q Consensus 363 ~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~~~dg- 440 (954)
+|++.+. .+|.|+.+|.|.+.+-.-... . -+..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~~~~-~-------------------~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSFQLI-R-------------------GFQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccceee-e-------------------hheecchhhhhHhhcccCceEEEEEeecCC
Confidence 4566666 789999999988877432110 1 13445555 44444444446777776654
Q ss_pred ----EEEEEEeeCCcce---eee--eeeec-----ccCCEEEEEEecCCCceEEEEEcCCCeEEEEE--CCC--CceEEE
Q 002196 441 ----IVHLYTYHGGDEL---RNH--LEIEA-----HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD--AVT--GTKQYI 502 (954)
Q Consensus 441 ----~i~iwd~~~~~~~---~~~--~~~~~-----h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd--~~~--~~~~~~ 502 (954)
.++||+++.-+.- ... ..+.. ...++.+++.+.+-+ .+|.|-.+|.|..+. +.. |....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 5999998643211 111 01122 346789999999877 799999999999984 222 222222
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee-EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
......+|+.+.+..++. .++.......|.+|.+....+.. ....++...+|.++++....+++++. ..+.+
T Consensus 167 ~~~~~~pITgL~~~~d~~--s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-----e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGK--SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-----EFLYF 239 (933)
T ss_pred eccCCCCceeeEEecCCc--eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-----ceEEE
Confidence 223467899999886663 43444445678999988555333 36677779999999977665666653 34999
Q ss_pred EeCCCCeEEEEEe
Q 002196 582 WNESEGAVKRTYH 594 (954)
Q Consensus 582 wd~~~~~~~~~~~ 594 (954)
||.....+...+.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9988766666666
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=7.3e-05 Score=82.25 Aligned_cols=271 Identities=15% Similarity=0.144 Sum_probs=149.2
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
.+++++|+|..- +|+.|-.-|.+.+|...+.+... +...|+.+|..+.|||+|..|+++.
T Consensus 61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~ht-------------------v~~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHT-------------------VVETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred ehhhhccChHHH-HHhhccccceeEEEecCCceeee-------------------eccCCCCCceeEEecCCCCeEEEcC
Confidence 467799999876 88999999999999988766433 2456999999999999999999999
Q ss_pred cCCEEEEEEeeCCcceeeeeeeeccc--C--CEEEEEEecCCCce----EEEEEcCCCeEE-EEECCCCceEEEeccCCC
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHV--G--SVNDLAFSYPNKQL----SVVTCGEDRVIK-VWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~--~--~v~~~~~s~~~~~~----~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~ 508 (954)
.=|.|.+|...--..+... .+..|. . ...|...++++... ..+..+.+..+- .++++....-+... |
T Consensus 121 ~~g~v~lwr~d~~g~~q~~-~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-- 196 (1416)
T KOG3617|consen 121 NPGSVHLWRYDVIGEIQTS-NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-- 196 (1416)
T ss_pred CCceeEEEEeeeccccccc-hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c--
Confidence 9999999988743222211 122232 1 23455556664321 123344444333 44433221111111 1
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC----------------
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN---------------- 572 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------------- 572 (954)
+..++|..++.++.+|+|+..|-.. .+...... +..| .+-|.+...-+++...+
T Consensus 197 -------sgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~-dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee 266 (1416)
T KOG3617|consen 197 -------SGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHKL-DSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE 266 (1416)
T ss_pred -------cCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEEc-cchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHH
Confidence 1223446788888888887766332 22221111 1110 01111111111111000
Q ss_pred ----------CCCceEEEEEeCCCCe--EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC-------cee
Q 002196 573 ----------KEGESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-------NLL 633 (954)
Q Consensus 573 ----------~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~ 633 (954)
|...+-|.+=. ..|. ...++....+..+.+++++..+..+..|...|.+.+|.-... .-.
T Consensus 267 ~~~vk~sgk~GgrqGgiA~sE-ssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~ 345 (1416)
T KOG3617|consen 267 RCAVKVSGKLGGRQGGIACSE-SSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDV 345 (1416)
T ss_pred hhhhhhccccCCccCcccccc-ccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcce
Confidence 00000011100 0110 011222223447899999999999999999999999964322 223
Q ss_pred EEEecC-CCCCCcceEEECCCCCEEEEEeCC
Q 002196 634 ASIDAD-GGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 634 ~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
..+... ...+.|+.+.|.|-...++.-+..
T Consensus 346 w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 346 WTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred EEecCchhhccceEEEEeccccchhhhhhhh
Confidence 333322 234578999999966666554443
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00012 Score=74.00 Aligned_cols=245 Identities=13% Similarity=0.150 Sum_probs=135.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC-E
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-L 432 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 432 (954)
.|+..|..++|||..+-|+..++.+..|+|.|+++...+.. +..| ..+++++|.-|.. +
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCcce
Confidence 37788999999999887899999999999999999876654 3445 8999999998755 6
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec------CCCceEEEEEcCCCeEEEEECCC--CceEEEec
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY------PNKQLSVVTCGEDRVIKVWDAVT--GTKQYIFE 504 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~ 504 (954)
|..|-..|.|.|||+...+.......-.-...+|..++..+ .+. +++..+. .+..|++.- +.....++
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt--~l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALT--VLQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeeh--hhhhhhhhccccCCCcccc
Confidence 66777889999999986543222111111223444443332 233 3333333 344555432 22222222
Q ss_pred -cCCCCeEEEeeeccCCccEEEEEecCCe------EEE-EeCCCCCceeEe-eCC-CC------ceEEEEECCCCCEEEE
Q 002196 505 -GHESPVYSICPHHKENIQFIFSTATDGK------IKA-WLYDNLGSRVDY-DAP-GH------SSTMMAYSADGARLFS 568 (954)
Q Consensus 505 -~~~~~v~~~~~~~~~~~~~l~s~s~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~v~~~~~s~~g~~l~~ 568 (954)
+..+...++..++..+ ..+++.-.+.. |-. -|..++..+... ..+ +. .-..+.-.++.++++.
T Consensus 327 le~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 1234445555555443 44444433211 111 011111111110 000 11 1112222345555555
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECC
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 628 (954)
.+. ....+.+||+.+++.++++.... ++..++... ++.-++..-.|..++||..+
T Consensus 406 ~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 442 25569999999999999887752 677665432 33333333345578887654
No 337
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.16 E-value=0.017 Score=65.68 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=50.6
Q ss_pred CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCcccee-EEEEecCCCe
Q 002196 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT-GLAFSNTLNV 941 (954)
Q Consensus 864 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~~ 941 (954)
|.|.-+|+.+|+.+.+.+............ .+.+++.++.||.++.+|.+||+.+-.++-...... =+.|.-||+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 568889999999888766332222222222 344777788899999999999999988775432222 2445567764
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=4.1e-05 Score=85.22 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=140.0
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
.++.|+....+..+|+++.+..+...-..+.|.-++. ++.++.+|...|+|.+-|.++.+....+..|.+.+..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 4788888888999999999888777655656766653 337899999999999999999999999999998887654
Q ss_pred ECCCCCEEEEEEeCCCC-----ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCC-Cc
Q 002196 559 YSADGARLFSCGTNKEG-----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDN-VN 631 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~ 631 (954)
. .|+.|++||.+... +..+.+||++.-+.+.-+.-+-+ ..-+.|+|.- ..+++++..|...+-|..+ +.
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 4 78999999865432 56789999998776665554433 2345677753 5778888889999988322 12
Q ss_pred e-eEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 632 L-LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 632 ~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
+ ......+.....+..+.++++|+.+|.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222222445899999999999999999999999973
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.14 E-value=0.0067 Score=63.43 Aligned_cols=228 Identities=12% Similarity=0.054 Sum_probs=111.9
Q ss_pred EEccCCCEEEEEEc-CC--EEEEEEeeCCcceeeeeeeeccc-CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 425 MWSPDGTLFGVAYS-KH--IVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 425 ~~spdg~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
+|.+||+.|+.++. || .+.+.|+.+++..+ |.... .......++|+++. ++-......|+-.|+++.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~~--~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDRA--LYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSSE--EEEEETTTEEEEEETTT--EE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCCe--EEEEECCCeEEEEECCcCcEE
Confidence 67889987777655 44 57777888876543 33332 22334667788874 443445568899999998876
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEec----------------------CCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTAT----------------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
..+......+-...|..+.++..++..-. ...|..-|+.+++....+. ....+.-+.
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~ 194 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQ 194 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcc
Confidence 66666666665566655555555443211 1234445666655444443 355778899
Q ss_pred ECCCCCEEEEEEeCCCCceE-EEEEeCCC-CeEEEEEecCC-CCCeEEEEEeCCCCEEEEEE-----CCCeEEEEECCCC
Q 002196 559 YSADGARLFSCGTNKEGESY-LVEWNESE-GAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAG-----DEFMIKFWDMDNV 630 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~-i~iwd~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 630 (954)
|+|....++.-+..+..+.. -++|-+++ +...+.+..+. ...+..=-|.|||..|.--+ .+..|.-+|..++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG 274 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC
Confidence 99976555544443332221 24454332 33333333332 22344446899998776533 3557888889887
Q ss_pred ceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
+.......+ .....-.++||++++-=+.|
T Consensus 275 ~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 275 ERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 665444332 33456667899888754444
No 340
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.12 E-value=4.1e-06 Score=50.41 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHhc
Q 002196 6 RELVFLILQFLDEEKFKETVHKLEQDS 32 (954)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (954)
+++.+||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 341
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.10 E-value=0.0078 Score=67.19 Aligned_cols=250 Identities=15% Similarity=0.121 Sum_probs=138.7
Q ss_pred eeEEEEcCCCCeEEEEEEcCC----eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 359 VKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
+...++||||++++++-+..| .++++|+.+|+.+.. .+ . ...-..+.|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~--~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------E--NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------E--EEESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------c--ccccceEEEeCCCCEEE
Confidence 446789999997776666666 499999999976643 11 1 11122399999999887
Q ss_pred EEEcCC-----------EEEEEEeeCCcceeeeeeeecccCC--EEEEEEecCCCceEEEEEcCC--CeEEEEECCCC--
Q 002196 435 VAYSKH-----------IVHLYTYHGGDELRNHLEIEAHVGS--VNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTG-- 497 (954)
Q Consensus 435 s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~~~l~s~~~d--g~i~iwd~~~~-- 497 (954)
....+. .|+.|.+.+...-. ...+...... ...+..++|++.+++.+.+.. ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 765433 36777776654321 1134443332 678899999996333233332 45888888775
Q ss_pred --ceEEEeccCCCCe-EEEeeeccCCccEEEEEe---cCCeEEEEeCCCCCc---eeEeeCCCCceEEEEECCCCCEEEE
Q 002196 498 --TKQYIFEGHESPV-YSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 498 --~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
.....+......+ ..+... ++ .+++... ..+.|...++..... ...+..+...+.-..+...+.+|+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 2333333333333 333332 22 3443332 245677778777663 2233334443333334445666666
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEE--EE--CCCeEEEEECCCCcee
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA--AG--DEFMIKFWDMDNVNLL 633 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 633 (954)
.... ++...|.++++..+.....+.......+..+...++++.+.. .| .-++++.||+.+++..
T Consensus 342 ~~~~-~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYRE-NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 447789999998555555555544435566555555554333 22 4468889999887654
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.0021 Score=71.33 Aligned_cols=284 Identities=13% Similarity=0.036 Sum_probs=154.4
Q ss_pred eEEEEEEcCCeEEEEeCCCCceeeeeeeE------EEeccCCCcccccccc-CC--CCCCeEEEEEcc-----CCCEEEE
Q 002196 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFK------VWELGACSMPLQASLS-SD--YTASVNRVMWSP-----DGTLFGV 435 (954)
Q Consensus 370 ~ll~~g~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~--h~~~V~~l~~sp-----dg~~l~s 435 (954)
+.+.+|+..|.|+|+-+.+++.+..-.+- =|-+...+......-. .+ ..+......+|- ||++|..
T Consensus 67 y~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 67 YGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence 46788999999999999999888653321 1222211111110000 00 011122222222 7888887
Q ss_pred EEc-CCEEEEEEeeCCcceeeeeeee----cc---------cCCEE-----EEEEecCCCceEEEEEcCCCeEEEEECCC
Q 002196 436 AYS-KHIVHLYTYHGGDELRNHLEIE----AH---------VGSVN-----DLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (954)
Q Consensus 436 ~~~-dg~i~iwd~~~~~~~~~~~~~~----~h---------~~~v~-----~~~~s~~~~~~~l~s~~~dg~i~iwd~~~ 496 (954)
-.. +..|...+++..++-+- ..+. -| ++.|. .+=++|||+. +..+.-..+.+.+.|..+
T Consensus 147 ndk~n~Rvari~l~~~~~~~i-~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~et 224 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKI-TELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAET 224 (635)
T ss_pred ecCCCcceEEEECccEeecee-EeCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECcc
Confidence 654 34455555544332110 0111 11 12222 2334556653 223334456777778777
Q ss_pred CceEEEeccCCCCeEEEeeeccCCccEEEEEecC----CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
.+...++.--. ....+.++++ |.++++.+.+ .++..-+.........+.... .-.+.++|++....
T Consensus 225 meV~~qV~Vdg-npd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkdGK~~~V~--- 294 (635)
T PRK02888 225 MEVAWQVMVDG-NLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKAGKFKTIG--- 294 (635)
T ss_pred ceEEEEEEeCC-CcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhCCCEEEEC---
Confidence 66655544222 2233455553 3666666532 122222222211111111110 01334578876653
Q ss_pred CCCceEEEEEeCCC-----CeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCce------------eE
Q 002196 573 KEGESYLVEWNESE-----GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL------------LA 634 (954)
Q Consensus 573 ~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~ 634 (954)
...|.+.|.++ ...+..+.... ....+.++|||+++++++ .+.+|.|.|+.+.+. ..
T Consensus 295 ---gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 295 ---GSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred ---CCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 23489999988 35555555433 578899999999988877 688999999987553 33
Q ss_pred EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
..... .+ -...+|.++|....+..-|..|..|++..
T Consensus 370 evevG--lG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EPELG--LG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eeccC--CC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33321 22 34689999999888888999999999875
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00082 Score=73.28 Aligned_cols=192 Identities=14% Similarity=0.107 Sum_probs=116.0
Q ss_pred CCCCCCeEEEEEccCCCEEEEEE---cC-CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe--
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAY---SK-HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-- 488 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~-- 488 (954)
..-...+..-+|+|+++.++..+ .. ..+.++++.+++.... ..+ .+.-..-+|+|||++ ++++...||.
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~~---~g~~~~P~fspDG~~-l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LNF---NGNNGAPAFSPDGSK-LAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-ecc---CCccCCccCCCCCCE-EEEEECCCCCcc
Confidence 34456777889999999876552 23 4689999998875442 123 334456789999998 5777777775
Q ss_pred EEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEE-ecCCe--EEEEeCCCCCceeEeeCCCCceEEEEECCCCCE
Q 002196 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (954)
Q Consensus 489 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 565 (954)
|++.|+..+...+ +....+.-..-.|+|++ +.++.. +..|. |.+++.+.... .........-..-.|+|||++
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG--~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGINTSPSWSPDG--SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCccee-cccCCccccCccCCCCC--CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCE
Confidence 5555877776433 43222222233455554 555544 45565 44555554433 223333333337789999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 618 (954)
++..+.. .+...|.+.|+.++...+.+.... ....-.+.+++..++..+.
T Consensus 340 i~~~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 340 IVFESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEecc
Confidence 9998744 233557788887766444443321 2334567788877766553
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=0.00013 Score=78.32 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=69.6
Q ss_pred CCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEE
Q 002196 344 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (954)
Q Consensus 344 ~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (954)
+....-+..+.....|.|++++|+.+ .++.|+.||.|.+||...+.... ....-..+.
T Consensus 247 klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~ 304 (545)
T PF11768_consen 247 KLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTL 304 (545)
T ss_pred ceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeee---------------------eeecccceE
Confidence 33444566677899999999999999 67899999999999988764332 224456789
Q ss_pred EEEccCCCEEEEEEcCCEEEEEEeeCC
Q 002196 424 VMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (954)
Q Consensus 424 l~~spdg~~l~s~~~dg~i~iwd~~~~ 450 (954)
++|+|+|..+++|+..|.+.+||+.-+
T Consensus 305 iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 305 IAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999999999999999999999998643
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.03 E-value=0.0028 Score=71.78 Aligned_cols=275 Identities=11% Similarity=0.079 Sum_probs=155.2
Q ss_pred EEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE--EEEEccCCCEEEEEEcCCEEEEEEeeC
Q 002196 372 LVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN--RVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (954)
Q Consensus 372 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~spdg~~l~s~~~dg~i~iwd~~~ 449 (954)
+..++.++.|.-.|..+|+.+-. ....... ..+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~-------~~~~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWR-------YDPKLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhce-------eCCCCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 55677789999999999986532 2211100 00000010 01111 236777888999999999999
Q ss_pred Ccceeeeeeeeccc---CCE-EEEEEecCCCceEEEEEc---------CCCeEEEEECCCCceEEEeccCCCC-------
Q 002196 450 GDELRNHLEIEAHV---GSV-NDLAFSYPNKQLSVVTCG---------EDRVIKVWDAVTGTKQYIFEGHESP------- 509 (954)
Q Consensus 450 ~~~~~~~~~~~~h~---~~v-~~~~~s~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~------- 509 (954)
|+.+-... ...+. ..+ ....+. + . .++.++ .++.+..+|..+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-K-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-C-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98765321 12110 001 111222 2 3 244443 4688999999999988876542111
Q ss_pred -------------eE-EEeeeccCCccEEEEEecCC------------------eEEEEeCCCCCceeEeeCCCCceE--
Q 002196 510 -------------VY-SICPHHKENIQFIFSTATDG------------------KIKAWLYDNLGSRVDYDAPGHSST-- 555 (954)
Q Consensus 510 -------------v~-~~~~~~~~~~~~l~s~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~v~-- 555 (954)
+. ..++.+ .+..++.++.++ .|.-+|.++++....+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 10 111111 224677776655 688899999888877643222110
Q ss_pred ----EEEEC----CCCC---EEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEE--------
Q 002196 556 ----MMAYS----ADGA---RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-------- 616 (954)
Q Consensus 556 ----~~~~s----~~g~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------- 616 (954)
...+. -+|. .+++++. ++.+...|.++|+.+....... ..+..+| ..++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~~----~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAPK----NGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEECC----CceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 00111 1333 3455443 3459999999999887764321 1123333 233332
Q ss_pred ----------ECCCeEEEEECCCCceeEEEecCCCC------CCc--ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeE
Q 002196 617 ----------GDEFMIKFWDMDNVNLLASIDADGGL------QAS--PCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (954)
Q Consensus 617 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v--~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 678 (954)
..+|.|.-.|+.+|+.+.+....... ... ..+.. .+..++.++.||.++.+|..+|+.+.
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence 24678999999999988887643111 011 11222 45688888999999999999994444
Q ss_pred E
Q 002196 679 R 679 (954)
Q Consensus 679 ~ 679 (954)
+
T Consensus 431 ~ 431 (488)
T cd00216 431 K 431 (488)
T ss_pred E
Confidence 3
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00034 Score=77.37 Aligned_cols=185 Identities=12% Similarity=0.171 Sum_probs=129.9
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
...++|++++ +++|+.|+.+|.|++++..... . +...|... ..+|. +++||+.||.|.|-.+-+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~---~~~~~s~~------~~~Ge--y~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K---TNFDHSSS------ILEGE--YVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--c---cccccccc------ccCCc--eEEEecCCCcEEEeeccCC
Confidence 3567777775 6789999999999999887542 2 23335443 55788 7999999999999998888
Q ss_pred ceEEEeccCCCCeEEEeeecc---CCccEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 498 TKQYIFEGHESPVYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
+...++. ...++.+++++|+ ...+.+++|+.-| +.++.-+-.+. ........+.|.++.| .|.+++-+...
T Consensus 104 ~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~ 179 (846)
T KOG2066|consen 104 DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDD 179 (846)
T ss_pred ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCC
Confidence 8777665 5677899999887 2236789999888 77765332222 2233444568999999 57888888755
Q ss_pred CCCceEEEEEeCCCCeEEEEEecCCCC-----CeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGLGKR-----SVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
| +++||..+++.+..++..... ....+.|.++. .++.|=.| +|+|..++
T Consensus 180 G-----v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 180 G-----VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred C-----cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 4 999999998888777654331 12346777654 44444433 67777776
No 347
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00022 Score=78.79 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=123.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..+.++|++++.. .++-|+.+|.|++++....-.. ...|+.. ..+|.+++
T Consensus 38 ~~D~is~~av~~~---~~~~GtH~g~v~~~~~~~~~~~---------------------~~~~s~~------~~~Gey~a 87 (846)
T KOG2066|consen 38 QNDAISCCAVHDK---FFALGTHRGAVYLTTCQGNPKT---------------------NFDHSSS------ILEGEYVA 87 (846)
T ss_pred hhhHHHHHHhhcc---eeeeccccceEEEEecCCcccc---------------------ccccccc------ccCCceEE
Confidence 3456788888753 8899999999999997654210 1234433 56899999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC-----CCceEEEEEcCCCeEEEEECC--CCceEEEeccCC
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-----NKQLSVVTCGEDRVIKVWDAV--TGTKQYIFEGHE 507 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 507 (954)
+|+.||+|.|-.+-+.+... . .....++.+++++|+ .+ .+++||.-| +.++.-. ..+....+..-.
T Consensus 88 sCS~DGkv~I~sl~~~~~~~---~-~df~rpiksial~Pd~~~~~sk--~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 88 SCSDDGKVVIGSLFTDDEIT---Q-YDFKRPIKSIALHPDFSRQQSK--QFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred EecCCCcEEEeeccCCccce---e-EecCCcceeEEeccchhhhhhh--heeecCcce-EEEehhhhhcCccceeeecCc
Confidence 99999999999988876553 2 234568999999998 34 489999988 7776421 111122455668
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC------ceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH------SSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
++|.+++|.. ++++-++.+| |++||+.+............ -...+.|.++.+.++ |-.+ +|++
T Consensus 161 G~I~~i~W~g----~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d-----~v~i 229 (846)
T KOG2066|consen 161 GPIHSIKWRG----NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGD-----SVKI 229 (846)
T ss_pred cceEEEEecC----cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCC-----eEEE
Confidence 8999999863 4677666555 79999887666554443332 234577876655443 3321 2677
Q ss_pred EeCC
Q 002196 582 WNES 585 (954)
Q Consensus 582 wd~~ 585 (954)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 6665
No 348
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.98 E-value=5.8e-06 Score=62.25 Aligned_cols=52 Identities=33% Similarity=0.570 Sum_probs=42.1
Q ss_pred HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHHHHHHhcCCH
Q 002196 38 MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDR 90 (954)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~ 90 (954)
+..++++|++|+|+.|+..+...........+ .+.|.|++|+|+|+++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999888443322222 39999999999999998764
No 349
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.91 E-value=1.6e-05 Score=52.10 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHhcCCC
Q 002196 4 LSRELVFLILQFLDEEKFKETVHKLEQDSGFF 35 (954)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (954)
.++++.++|+|||..+||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.001 Score=72.60 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=122.9
Q ss_pred eecccCCEEEEEEecCCCceEEEEEcCC--CeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeE--E
Q 002196 459 IEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKI--K 534 (954)
Q Consensus 459 ~~~h~~~v~~~~~s~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i--~ 534 (954)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++...... ..+.-..-.|+|++. .++++...||.. .
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334456777899999997433433333 369999999887655443 222233446777664 566666777774 4
Q ss_pred EEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEE
Q 002196 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 535 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 614 (954)
++|+....... +....+.-..-.|+|||+.++..+ |+.+...|.++|...+...+....... . ..-.++|||++++
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~-~-~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG-N-SNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC-C-cCccCCCCCCEEE
Confidence 55666544222 332233334678999999999885 456677899999887765333222222 2 2567999999999
Q ss_pred EEEC-CCe--EEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 615 AAGD-EFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 615 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
..+. +|. |.+.|+.++...+.+.. ......-.|.++|..+...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence 8874 344 77777776665444432 2234567788888887765544
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.89 E-value=0.0093 Score=64.50 Aligned_cols=242 Identities=13% Similarity=0.079 Sum_probs=136.1
Q ss_pred CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCccee----------------------------------------eeeee
Q 002196 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR----------------------------------------NHLEI 459 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------------~~~~~ 459 (954)
.|+++.|+++..-|++|...|.|.||.....+... +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999775432111 01122
Q ss_pred ecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe--cc------CCCCeEEEeee---ccCCc---cEEE
Q 002196 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EG------HESPVYSICPH---HKENI---QFIF 525 (954)
Q Consensus 460 ~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~------~~~~v~~~~~~---~~~~~---~~l~ 525 (954)
....++|++++.|.-| +++.|..+|.+.|.|++....+..- .. ....|+++.|. ..+++ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346889999998666 7999999999999999877776652 22 23457777765 22332 4788
Q ss_pred EEecCCeEEEEeCCC-CCc--eeE----eeCCCCceEEEE-ECCC-C--------------------CEEEEEEeCCCCc
Q 002196 526 STATDGKIKAWLYDN-LGS--RVD----YDAPGHSSTMMA-YSAD-G--------------------ARLFSCGTNKEGE 576 (954)
Q Consensus 526 s~s~dg~i~iwd~~~-~~~--~~~----~~~~~~~v~~~~-~s~~-g--------------------~~l~~~~~~~~~~ 576 (954)
+|...|.+.+|.+.- ... ... ...+...+..+. ++.+ | .++++++.
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe----- 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE----- 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S-----
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc-----
Confidence 899999999997741 111 111 112333444333 3221 1 14444442
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEe-----CCCCEEEEEECCCeEEEEECCCCceeEEEecCC--CCCCcceEE
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFD-----TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCIR 649 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~v~ 649 (954)
..++++...+.+...+...... ....+.+- ..+..|++-..+|.|+++.+..-+.+..+.... ....+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 2389999888776665542211 23334442 345677777899999999999988888887642 122355677
Q ss_pred ECCCCCEEEEEeCCCcEEEEEc
Q 002196 650 FNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 650 ~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88888877665443 4444443
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0039 Score=68.33 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=114.0
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
........+.++|+|+++++ +.||.-.|+..... +. ...+.-...+|.+.++ +++-...+.|.++.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 34456789999999999998 46777777773322 21 1224456789998665 6777778899997422
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
+......+.. ...+..+-. |..|...+. +.|.+||+.+......+... .|..+.|+++|.+++..+.+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~--- 165 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD--- 165 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S----
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC---
Confidence 2222223321 122444422 355555544 48999999988777776643 48999999999999998743
Q ss_pred ceEEEEEeCCCC--------------eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce--eEEEecC
Q 002196 576 ESYLVEWNESEG--------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDAD 639 (954)
Q Consensus 576 ~~~i~iwd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 639 (954)
. +.+++.... ..+..+ .. .|.+.+|..+ .++-.+.. .|+.+ -+|+. +..+
T Consensus 166 ~--i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~-~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~l--- 231 (443)
T PF04053_consen 166 S--IYILKYNLEAVAAIPEEGVEDAFELIHEI---SE-RIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHL--- 231 (443)
T ss_dssp S--EEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S---SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE----
T ss_pred e--EEEEEecchhcccccccCchhceEEEEEe---cc-eeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEc---
Confidence 2 555543322 223222 22 6888888765 44444444 67663 33332 3333
Q ss_pred CCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
..++.-+.+.+....+.....|+.+..+.+.
T Consensus 232 --d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 232 --DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred --CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 2246667777766788888888888887664
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=5.1e-06 Score=88.64 Aligned_cols=204 Identities=14% Similarity=0.216 Sum_probs=131.1
Q ss_pred CCCCeeEEEEcCCCC-eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCE
Q 002196 355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~-~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (954)
....+.|++++-+.+ -++++|..+|.|.+-......-. ...+..+|...+++++|++ |.+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 344677777766544 68999999999999887654221 1122457889999999999 7778
Q ss_pred EEEEE----cCCEEEEEEeeCC--cceeeeeeeec-ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eEEEec
Q 002196 433 FGVAY----SKHIVHLYTYHGG--DELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFE 504 (954)
Q Consensus 433 l~s~~----~dg~i~iwd~~~~--~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~ 504 (954)
||+|- .|..+.|||+.++ .+.... .+.+ ......+++|..+.+ ++.+|...+.++++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88873 3567999999886 222111 1222 344567899997777 68888888899999987321 11111
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEe-CCCCCceeEeeCCC-----CceEEEEECCCCCE-EEEEEeCCCCce
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWL-YDNLGSRVDYDAPG-----HSSTMMAYSADGAR-LFSCGTNKEGES 577 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~-----~~v~~~~~s~~g~~-l~~~~~~~~~~~ 577 (954)
.+..+..+.+.|-.. .++++-. ||.|.+|| ..+.+.......+. ..+..++|.|...- +++...+ ..
T Consensus 194 -nTk~vqG~tVdp~~~-nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~ 267 (783)
T KOG1008|consen 194 -NTKYVQGITVDPFSP-NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SI 267 (783)
T ss_pred -hhhhcccceecCCCC-Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cc
Confidence 233455566666322 4666555 99999999 44433332221121 25889999997543 3444322 45
Q ss_pred EEEEEeCC
Q 002196 578 YLVEWNES 585 (954)
Q Consensus 578 ~i~iwd~~ 585 (954)
+|+.+|+.
T Consensus 268 tIrlydi~ 275 (783)
T KOG1008|consen 268 TIRLYDIC 275 (783)
T ss_pred eEEEeccc
Confidence 68999875
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.84 E-value=0.029 Score=62.59 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=130.2
Q ss_pred CCeEEEEEccCCCEEEEE-EcCC----EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC--------
Q 002196 419 ASVNRVMWSPDGTLFGVA-YSKH----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-------- 485 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-------- 485 (954)
..+....+||||+++|.+ +..| .++++|+++|+.+... +... ....+.|.+|++. ++.+...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 344468899999999876 3334 5999999999755421 2211 1223999999986 3444422
Q ss_pred --CCeEEEEECCCCce--EEEeccCCCC--eEEEeeeccCCccEEEEEecC----CeEEEEeCCCC-----CceeEeeCC
Q 002196 486 --DRVIKVWDAVTGTK--QYIFEGHESP--VYSICPHHKENIQFIFSTATD----GKIKAWLYDNL-----GSRVDYDAP 550 (954)
Q Consensus 486 --dg~i~iwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~-----~~~~~~~~~ 550 (954)
...|+.|.+.+... ...+...... ...+..+. ++++++..+.. ..+.+.++... .........
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 33588888877643 2455544443 34455544 44676654332 34677777764 222222222
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe---EEEEEecCCC-CCeEEEEEeCCCCEEEEEE-CCC--eEE
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA---VKRTYHGLGK-RSVGVVQFDTTKNRFLAAG-DEF--MIK 623 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~dg--~i~ 623 (954)
......+... +..++..+..+.....|...++.... ....+..+.. ..+..+.. .+++|+... .++ .|+
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 2233333333 44444444444446678788887765 2324444333 13444443 455555543 443 688
Q ss_pred EEECCCCceeEEEecCCCCCCcceEEECCCCCEEEE--EeC--CCcEEEEEccCCC
Q 002196 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV--STN--DNGIKILANADGI 675 (954)
Q Consensus 624 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s--~~~--dg~i~iwd~~~~~ 675 (954)
++++..+.....+.... .+.|..+...+++..+.. .+. -+++..||+.+++
T Consensus 353 v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998455555555442 234555555565554332 222 2578888888873
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.84 E-value=0.0046 Score=66.80 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=130.8
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceee------ee------------eeEEEeccCCCcc------ccccc
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA------VK------------SFKVWELGACSMP------LQASL 413 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~~~------~~~~~ 413 (954)
.|+.+.|+++.. -|++|...|.|.||.+...+... .. .-.+-|+.....+ ....+
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999877 57889999999999876543332 00 1122333221111 12223
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeec------ccCCEEEEEEec---CCC---ceEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA------HVGSVNDLAFSY---PNK---QLSVV 481 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~---~~~---~~~l~ 481 (954)
+....++|++++.| |=-++|.|+.+|.+.|.|++....+... .+.. ....|+++.|+- .++ .+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 45568999999997 6669999999999999999776655431 2222 234688888872 222 24688
Q ss_pred EEcCCCeEEEEECC--C-CceE----EEeccCCCCeEEEeeeccCCc-------------------cEEEEEecCCeEEE
Q 002196 482 TCGEDRVIKVWDAV--T-GTKQ----YIFEGHESPVYSICPHHKENI-------------------QFIFSTATDGKIKA 535 (954)
Q Consensus 482 s~~~dg~i~iwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~s~dg~i~i 535 (954)
+|...|.+.+|.+. . +... .....+.++|..+..-....| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999764 1 2211 122246677766653311111 12444455788999
Q ss_pred EeCCCCCceeEeeCCCCceEEEEEC-----CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC---CCeEEEEEe
Q 002196 536 WLYDNLGSRVDYDAPGHSSTMMAYS-----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK---RSVGVVQFD 607 (954)
Q Consensus 536 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~ 607 (954)
+...+.+..............+.+- ..+..|++... ++.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766555444222233344442 23445555544 34599999998888877765321 123345667
Q ss_pred CCCCEEEEEE
Q 002196 608 TTKNRFLAAG 617 (954)
Q Consensus 608 ~~~~~l~~~~ 617 (954)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555544
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.80 E-value=0.1 Score=59.45 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=118.3
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCC-CCeEE----------EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYS----------ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
.++.++.++.|+-.|..+|+.+..+.... ..+.. +++. . ..++.++.|+.+...|.++++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~--~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D--GKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C--CEEEEEcCCCEEEEEECCCCCEEeec
Confidence 36777778899999999999887765321 11111 1111 1 46778888999999999988877665
Q ss_pred eCCCCc-eEEEEECC---CCCEEEEEEeCC--CCceEEEEEeCCCCeEEEEEecCCCC----------------------
Q 002196 548 DAPGHS-STMMAYSA---DGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGKR---------------------- 599 (954)
Q Consensus 548 ~~~~~~-v~~~~~s~---~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------- 599 (954)
...... -..+.-+| ++ .++++.... ..++.|..+|.++|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 01111112 34 455443211 12456999999999888765432110
Q ss_pred --------C-eEEEEEeCCCCEEEEEECC-----C-----------eEEEEECCCCceeEEEecCCCC-------CCcce
Q 002196 600 --------S-VGVVQFDTTKNRFLAAGDE-----F-----------MIKFWDMDNVNLLASIDADGGL-------QASPC 647 (954)
Q Consensus 600 --------~-i~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 647 (954)
. -..+++.|...+++.+..+ + .|.-.|+++|+....++...|. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 1 1124666766777766522 2 6777899999998887654321 11112
Q ss_pred EEECCCCC---EEEEEeCCCcEEEEEccCCCeeE
Q 002196 648 IRFNKEGI---LLAVSTNDNGIKILANADGIRLL 678 (954)
Q Consensus 648 v~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~ 678 (954)
+.+..+|+ .++.+..+|.+++.|-.+| +.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCC-cee
Confidence 23334665 7888999999999999999 443
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.013 Score=57.17 Aligned_cols=237 Identities=11% Similarity=0.127 Sum_probs=130.9
Q ss_pred CeEEEEEecCCCCCeEEEEEeCCCCE-EEEEECCC-eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC-
Q 002196 587 GAVKRTYHGLGKRSVGVVQFDTTKNR-FLAAGDEF-MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND- 663 (954)
Q Consensus 587 ~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d- 663 (954)
|+++....... ....++++|.... ++.+-.-| ...++|......+.++.......-.-.-.|||||.+|...-.|
T Consensus 58 Gk~v~~~~lpa--R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 58 GKIVFATALPA--RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred Cceeeeeeccc--ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 55544443322 3455778886543 33444434 4678999988888777654333333456799999999876443
Q ss_pred ----CcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCC
Q 002196 664 ----NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV 739 (954)
Q Consensus 664 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (954)
|.|-|||...+.+.+-.+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~--------------------------------------------------------- 158 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFS--------------------------------------------------------- 158 (366)
T ss_pred CCCCceEEEEecccccceecccc---------------------------------------------------------
Confidence 5677777664422111111
Q ss_pred cccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEe-eccCCCCCCCCcccC
Q 002196 740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRNERNSTGKATT 818 (954)
Q Consensus 740 ~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw-~~~~~~~~~~g~~~~ 818 (954)
.|.-....+.+.+||+.++.+.. -|... ++...+.+.+..
T Consensus 159 ----------------------------------t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM--- 199 (366)
T COG3490 159 ----------------------------------THGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM--- 199 (366)
T ss_pred ----------------------------------cCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---
Confidence 13344456778889987776643 34333 222222211111
Q ss_pred CCCccccCCCCcccccc-cCCCCCCCCCccEEEeccCCCeEEEec-CCe-----EEEEEcccccEEEeeCCC-------C
Q 002196 819 NQAPQLWQPPSGILMTN-DISDTNPEDAVPCFALSKNDSYVMSAS-GGK-----ISLFNMMTFKTMTTFMPP-------P 884 (954)
Q Consensus 819 ~~~i~l~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~-----i~iwd~~~~~~~~~~~~h-------~ 884 (954)
...+.+.|..+|.++.. .++..-+.-.|+.++..+||..++.+- .|. --+=-...++.+.-+... .
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 11233456566665432 233223566788889999988777653 221 111111234444433322 2
Q ss_pred CCeeEEEecCCCCceEEEEecC-ccEEEEeccccceEEE
Q 002196 885 PAATFLAFHPQDNNIIAIGMED-SSIQIYNVRVDEVKTK 922 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~d-g~i~iwd~~~~~~~~~ 922 (954)
..|-+++... +..+++..+-. +...+||..+|..+..
T Consensus 280 nYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 280 NYIGSIAANR-RDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred hhhhheeecc-cCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 3578888887 44455555544 4677999999987654
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.73 E-value=0.012 Score=58.93 Aligned_cols=191 Identities=7% Similarity=0.083 Sum_probs=109.7
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
...+..++|+|+...|+++....+.|...+.. |+.+.... +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 44699999999988899999999999989974 66665422 233 357888999888887777
Q ss_pred EEcCCEEEEEEeeCCcc---eeeee--ee--e-cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC---CceEE--E
Q 002196 436 AYSKHIVHLYTYHGGDE---LRNHL--EI--E-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQY--I 502 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~---~~~~~--~~--~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~--~ 502 (954)
.-.++.+.++++..... ..... .+ . .+...+-.++|.+.+++ |+.+-...-..+|.+.. ...+. .
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 66689999998843221 11101 11 1 34567899999999886 34444554455554432 11111 1
Q ss_pred e------ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC---------CceEEEEECCCCCEEE
Q 002196 503 F------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLF 567 (954)
Q Consensus 503 ~------~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~~l~ 567 (954)
. ......+.++.++|.. +++++....+..|..+| ..++....+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1234457888888865 47888888889999998 4444444433332 2578999999997666
Q ss_pred EE
Q 002196 568 SC 569 (954)
Q Consensus 568 ~~ 569 (954)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.032 Score=54.58 Aligned_cols=271 Identities=13% Similarity=0.157 Sum_probs=151.6
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCe-EEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD-VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
+++....-...-..++|+|.-++-++.+-.-|+ ..++|..+.+...+..- .....+.+|. .|
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-----------~~~RHfyGHG------vf 121 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-----------QEGRHFYGHG------VF 121 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-----------ccCceeeccc------cc
Confidence 444444444455578999988877777777665 66899888776543110 0112244554 69
Q ss_pred ccCCCEEEEEEcC-----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE-ECCCCceE
Q 002196 427 SPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW-DAVTGTKQ 500 (954)
Q Consensus 427 spdg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw-d~~~~~~~ 500 (954)
||||.+|...-.| |.|-|||...+ +....++..|.-.-..+.|.+||+. ++.+. |-|..- |. |+..
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvan--GGIethpdf--gR~~ 193 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVAN--GGIETHPDF--GRTE 193 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeC--Cceeccccc--Cccc
Confidence 9999999876443 67999999853 4455577888888899999999994 44432 233332 11 1111
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--CCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
..+ -++. + .+++.-..+|.+. .+.++. .+...+..++..+||..++.+-..+..+..
T Consensus 194 lNl-------dsMe----P--Slvlld~atG~li--------ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 194 LNL-------DSME----P--SLVLLDAATGNLI--------EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred cch-------hhcC----c--cEEEEeccccchh--------hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 111 1111 1 1222111222211 111111 233467788888888877766544332211
Q ss_pred EEE-EeCCCCeEEEEEecCC------CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEE
Q 002196 579 LVE-WNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (954)
Q Consensus 579 i~i-wd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (954)
--+ =-...++.+.-+.... ...|.+++.+.+..+++..+ ..+...+||..+|..+...... .+..++-
T Consensus 253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva~ 328 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVAA 328 (366)
T ss_pred CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc----cccccee
Confidence 111 1112233333332221 12567788877667777666 4556789999999987765433 2233333
Q ss_pred CCCCCEEEEEeCCCcEEEEE
Q 002196 651 NKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd 670 (954)
. +.=+++.+.+|.+.++.
T Consensus 329 ~--~~gf~vssg~G~~~~~s 346 (366)
T COG3490 329 A--KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred c--cCceEEecCCceEEecc
Confidence 3 33355556678888764
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.12 Score=56.55 Aligned_cols=255 Identities=14% Similarity=0.103 Sum_probs=163.7
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE-
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV- 435 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s- 435 (954)
.....+...|++..+.++-.....+..-+.. ...... ....-...-..++.+++++.+..
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~------------------~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ------------------SLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccc-cceeee------------------eccCCCccccceeeCCCCCeEEEe
Confidence 3667788888886565555444445554444 111110 00001134457888998885544
Q ss_pred EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEc-CCCeEEEEECCCCceEEEeccCCCCeEEEe
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 514 (954)
...+..|.+.|..+........ -......++++|+++.++++-.. .++.+.+.|..+++.+.....-..+ ..++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~----vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIP----VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred cCCCCeEEEEcCcccceeeEee----eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 4456889999977765444211 12257789999999874333333 4799999999999888876544444 7777
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCcee-E---eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRV-D---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
+.+++. ...++-..++.|.+.|........ . ..........+.++|+|..+++..... .+..+...|..++...
T Consensus 167 ~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-~~~~v~~id~~~~~v~ 244 (381)
T COG3391 167 VDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS-GSNNVLKIDTATGNVT 244 (381)
T ss_pred ECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC-CCceEEEEeCCCceEE
Confidence 777663 244444578999999966543332 0 111223456789999999887765432 1356888998888776
Q ss_pred EE-EecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEec
Q 002196 591 RT-YHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 591 ~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 638 (954)
.. ...... ....+.++|+|..+.+.. ..+.+.+.|..+.........
T Consensus 245 ~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 245 ATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 65 333332 345678999999998885 458999999988877776654
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.65 E-value=0.029 Score=56.11 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=113.2
Q ss_pred EecCCCCCeEEEEEeCCCCEEEE-EECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLA-AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
+.+-.. .+..++|.|+.+.|++ ....+.|.-++. +|+.+..+...+ ....-.+++..++.++++.-.++.+.++++
T Consensus 17 l~g~~~-e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 17 LPGILD-ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -TT--S--EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CCCccC-CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 444444 5899999998765555 558889988887 578888887654 446788999888877776656888888887
Q ss_pred cCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccc
Q 002196 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (954)
Q Consensus 672 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i 751 (954)
......+..-. +
T Consensus 94 ~~~~~~~~~~~--------------------------------------------------------------------~ 105 (248)
T PF06977_consen 94 DDDTTSLDRAD--------------------------------------------------------------------V 105 (248)
T ss_dssp ----TT--EEE--------------------------------------------------------------------E
T ss_pred eccccccchhh--------------------------------------------------------------------c
Confidence 54311110000 0
Q ss_pred cccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcc
Q 002196 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 831 (954)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~ 831 (954)
.-+. +..+ ..++..+..++|.|.+..|+++-+.....+|.+...
T Consensus 106 ~~~~------------l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~----------------------- 149 (248)
T PF06977_consen 106 QKIS------------LGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF----------------------- 149 (248)
T ss_dssp EEEE---------------S----SS--EEEEEETTTTEEEEEEESSSEEEEEEEST-----------------------
T ss_pred eEEe------------cccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc-----------------------
Confidence 0000 0011 114567889999999888888877666666653310
Q ss_pred cccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEE
Q 002196 832 LMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI 911 (954)
Q Consensus 832 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~i 911 (954)
. .+..+.+.+...... .......+.++++.|..+++++....+..|.+
T Consensus 150 -----------~------------------~~~~~~~~~~~~~~~---~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~ 197 (248)
T PF06977_consen 150 -----------P------------------GGFDLFVSDDQDLDD---DKLFVRDLSGLSYDPRTGHLLILSDESRLLLE 197 (248)
T ss_dssp -----------T-------------------SS--EEEE-HHHH----HT--SS---EEEEETTTTEEEEEETTTTEEEE
T ss_pred -----------c------------------Cccceeecccccccc---ccceeccccceEEcCCCCeEEEEECCCCeEEE
Confidence 0 111122222111110 11123347889999977888888888889999
Q ss_pred EeccccceEEEecCCc---------cceeEEEEecCCCeEEEe
Q 002196 912 YNVRVDEVKTKLKGHQ---------KRITGLAFSNTLNVLVSS 945 (954)
Q Consensus 912 wd~~~~~~~~~~~~h~---------~~V~~l~~s~dg~~l~s~ 945 (954)
+| .+|+.+..+.-.. ..--.|+|.++|++.+++
T Consensus 198 ~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 198 LD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp E--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99 6677666443111 246789999999765554
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.63 E-value=0.069 Score=55.76 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=130.5
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe----
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---- 503 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---- 503 (954)
..++.|+.|+.+| +.++++........ . .+...|..+...++-+. +++- .|+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~~--llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELNL--LLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccCE--EEEE-cCCccEEEEchhhcccccccccc
Confidence 3678899999999 89999833222221 1 13334999999998874 3333 3499999998764433311
Q ss_pred ----------ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC-----CceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 504 ----------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-----GSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 504 ----------~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
......+...+......+...+.......|.+|.+... .....+.. ...+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 11223344444112222234444555568888887653 12233333 3578888888 556776
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCC-----------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeE--E
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S 635 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 635 (954)
+..++ ..+.|+.++.....+..... .++..+.. +++.+|++. |..-.+.|. .|+... .
T Consensus 154 ~~~~~-----f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSKG-----FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCCc-----eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65322 78889887765544322111 12333333 345555543 223333444 343333 3
Q ss_pred EecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccc
Q 002196 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT 685 (954)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 685 (954)
+... ....++++. ..+|+..+. +.|.||++.++ ++++.+....
T Consensus 225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 3332 234566663 457776655 56999999999 7888877544
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.12 Score=56.87 Aligned_cols=235 Identities=16% Similarity=0.155 Sum_probs=112.8
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCccee---eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR---NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
+.|.++.|+.+.+++ +...||.+++||+....... ......-....+....+..+|- .+++ .++.+.+.+-.
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEEC--CCCeEEEEeCc
Confidence 799999999865554 56699999999986433000 0000111112233334443442 2333 34444444322
Q ss_pred CCc-eEEEe---ccCCC------CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCE
Q 002196 496 TGT-KQYIF---EGHES------PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (954)
Q Consensus 496 ~~~-~~~~~---~~~~~------~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 565 (954)
... ..+.+ ..... ....+ .....+....+....++.+.+.+-..... ....+++..+++||+|++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence 211 11111 11000 00000 01112223444455555555443222111 112358999999999999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
++.-..++ .+.+.+..-.+....+..........+.|..+ |..+..|. ..+..+...+
T Consensus 231 iAl~t~~g----~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~---------dav~l~~~----~~l~lvg~~~----- 288 (410)
T PF04841_consen 231 IALFTDSG----NLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN---------DAVVLSWE----DELLLVGPDG----- 288 (410)
T ss_pred EEEEECCC----CEEEEECcccceeEEeecCcCCCCcEEEEECC---------CcEEEEeC----CEEEEECCCC-----
Confidence 98877543 37777655555555555543334555666544 33333341 1122221111
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccccc
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFD 687 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 687 (954)
..+.|.-++..++..-.|| +||..-..- +.++.+......
T Consensus 289 ~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~~~~ 328 (410)
T PF04841_consen 289 DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDSTEN 328 (410)
T ss_pred CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHHHHH
Confidence 2245544555555555565 888765444 555555544433
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0055 Score=67.29 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..+.+..+..|++.. ++|.|+..|.|.++-+..+...... +....-..|...|+|++|++|+..+.
T Consensus 75 ~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~-------------~~t~~d~~~~~rVTal~Ws~~~~k~y 140 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLD-------------YVTPCDKSHKCRVTALEWSKNGMKLY 140 (726)
T ss_pred ccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcce-------------eeccccccCCceEEEEEecccccEEe
Confidence 345566677777776 8899999999999998774322111 11111234889999999999999999
Q ss_pred EEEcCCEEEEEEeeCC-cceeeeeeeecccCCEEEEEEe
Q 002196 435 VAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFS 472 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s 472 (954)
+|...|+|..-.+++. ........+..-.+.|..+...
T Consensus 141 sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 141 SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9999999999888772 1111222334455677777765
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.51 E-value=0.026 Score=62.04 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=107.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..-....+.++|+|+.+++ +.+|.-.|+.....+.. ..+.-...+|++++ .+|
T Consensus 31 ~~~~p~~ls~npngr~v~V--~g~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n-~yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV--CGDGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRN-RYA 83 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE--EETTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSS-EEE
T ss_pred CCcCCeeEEECCCCCEEEE--EcCCEEEEEEccCCccc------------------------ccCceeEEEEecCc-cEE
Confidence 4456899999999995555 45788888884443322 12455678899844 467
Q ss_pred EEEcCCEEEEE-EeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 435 VAYSKHIVHLY-TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iw-d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
+-...++|.|+ +++... .+.. .+. ..+..+-. |. +|...+. +.|.+||+.+++.++.+... +|..+
T Consensus 84 v~~~~~~I~I~kn~~~~~-~k~i-~~~---~~~~~If~---G~--LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKNEV-VKSI-KLP---FSVEKIFG---GN--LLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp EE-TTS-EEEEETTEE-T-T------S---S-EEEEE----SS--SEEEEET-TEEEEE-TTT--EEEEESS---E-EEE
T ss_pred EEECCCeEEEEEcCcccc-ceEE-cCC---cccceEEc---Cc--EEEEECC-CCEEEEEhhHcceeeEEecC--CCcEE
Confidence 77678889996 333221 1111 111 12333322 66 3444444 48999999999999998743 38889
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCC----------CceeEeeCC-CCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNL----------GSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
.|++++ .+++..+.+ .+.+++.+.. +........ ...|.+.+|..+ .++..+. . .+.-
T Consensus 151 ~Ws~~g--~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~----~-~lkY- 219 (443)
T PF04053_consen 151 IWSDDG--ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS----N-HLKY- 219 (443)
T ss_dssp EE-TTS--SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T----T-EEEE-
T ss_pred EEECCC--CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC----C-eEEE-
Confidence 998765 677777654 5666654432 001122222 447788888765 3333331 1 2433
Q ss_pred eCCCCeE--EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 583 NESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 583 d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
+-.|+. +..+. . ++.-+...+..+.++....|+.|..+.+.
T Consensus 220 -l~~Ge~~~i~~ld---~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 220 -LVNGETGIIAHLD---K-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -EETTEEEEEEE-S---S---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred -EEcCCcceEEEcC---C-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 223332 22221 2 55566666666677777777777666654
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.075 Score=55.47 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=127.4
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~ 450 (954)
.|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.++++..-
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 577888888 89999832221110 11334499999999888777664 599999998764
Q ss_pred cceeeee-----------eeecccCCEEEEE--EecCCCceEEEEEcCCCeEEEEECCCC-----ceEEEeccCCCCeEE
Q 002196 451 DELRNHL-----------EIEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTG-----TKQYIFEGHESPVYS 512 (954)
Q Consensus 451 ~~~~~~~-----------~~~~h~~~v~~~~--~s~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~ 512 (954)
....... ........+...+ =...+.. .++ ....+.|.+|.+... +..+.+. -...+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLC-VAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSS 143 (275)
T ss_pred ccccccccccccccccccccccccCCeeEEeeccccccce-EEE-EEECCEEEEEEEECCcccccceeEEEE-cCCCcEE
Confidence 3322100 0111223344444 1123332 333 344458888876553 3445554 4577888
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC------------CceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG------------HSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
++|.. +.++.|..++ ..+.|+.+........... .++..+.. +++.+|++... +-
T Consensus 144 i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-------~g 210 (275)
T PF00780_consen 144 IAFLG----NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-------IG 210 (275)
T ss_pred EEEeC----CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc-------eE
Confidence 88873 4577776544 6678888655543332111 12333333 34555554321 33
Q ss_pred EEeCCCCeEEE--EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 581 EWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 581 iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
+|=-..|+..+ .+.-.. ....+++. ..++++.+.+ .|.||++.+++.++.+...
T Consensus 211 ~fv~~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 211 VFVNKNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEcCCCCcCcccEEEcCC--chhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 33223454333 222211 34455553 4577777664 5999999999999999754
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.23 Score=54.35 Aligned_cols=247 Identities=16% Similarity=0.143 Sum_probs=157.7
Q ss_pred CeEEEEEccCCCEEEEEEcCC-EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 420 SVNRVMWSPDGTLFGVAYSKH-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
....+...|++..+....... .+...+... ..... ....-...-..++.++.+.+ .+++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 556678888886555443222 344444331 11111 11111133457788888887 46667678999999988777
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEec---CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
.......-. ....+++++.+ +.+..+.. ++++.+.|-.+............+ ..++++|+|..++.... .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 766554322 45567777665 44444443 688888888776666653332234 89999999998888762 3
Q ss_pred ceEEEEEeCCCCeEEE-E----EecCCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 576 ESYLVEWNESEGAVKR-T----YHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
+..+.+.|.......+ . ... ......+.++|++.+++..... +.+...|..++............ ....
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~ 257 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRG 257 (381)
T ss_pred CCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCc
Confidence 5569999977665553 1 111 1134568899999977776533 69999999988777662222222 4567
Q ss_pred EEECCCCCEEEEEeCC-CcEEEEEccCCCeeEEEe
Q 002196 648 IRFNKEGILLAVSTND-NGIKILANADGIRLLRTV 681 (954)
Q Consensus 648 v~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~ 681 (954)
+..+|+|..+.+.... +.+.+.|..+. ......
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~ 291 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTG 291 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeee
Confidence 8999999998887444 78888888776 444443
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.085 Score=54.92 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=133.8
Q ss_pred EEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCE
Q 002196 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI 441 (954)
Q Consensus 362 ~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~ 441 (954)
-.|.++...++.+--..+.|.-|+..+++... ..+.+.+.++..-.++..|+++...
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~---------------------~~~p~~~~~~~~~d~~g~Lv~~~~g-- 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV---------------------FPSPGGFSSGALIDAGGRLIACEHG-- 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE---------------------EECCCCcccceeecCCCeEEEEccc--
Confidence 45777777777777778899999988775432 1133445555555555556555332
Q ss_pred EEEEEeeCCcceeeeeee-ecc-cCCEEEEEEecCCCceEEEEEcCC------------CeEEEEECCCCceEEEeccCC
Q 002196 442 VHLYTYHGGDELRNHLEI-EAH-VGSVNDLAFSYPNKQLSVVTCGED------------RVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 442 i~iwd~~~~~~~~~~~~~-~~h-~~~v~~~~~s~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~ 507 (954)
+.+++.+++......... .+. ....+.+...|+|. +..+... |.++..|. .+..++.+..+-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence 567776655542221111 111 24567888899998 3333332 33444443 566666666666
Q ss_pred CCeEEEeeeccCCccEEEEE-ecCCeEEEEeCCC-----CCc--eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEE
Q 002196 508 SPVYSICPHHKENIQFIFST-ATDGKIKAWLYDN-----LGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~-----~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 579 (954)
..-+.++|+|++ +.++.+ +..+.|.-|++.. ... ...+....+..-.++...+|.+.+++..++ ..|
T Consensus 163 ~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g---~~v 237 (307)
T COG3386 163 TIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG---GRV 237 (307)
T ss_pred EecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC---ceE
Confidence 666889999877 445444 4457888887762 111 122222334556677888888775444322 249
Q ss_pred EEEeCCCCeEEEEEecCCCCCeEEEEEe-CCCCEEEEEE
Q 002196 580 VEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 617 (954)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 617 (954)
..|+.. |+++..+..... .+.+++|. |+.+.|+..+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 999988 999888887754 67777775 3445554444
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.11 Score=57.28 Aligned_cols=211 Identities=14% Similarity=0.133 Sum_probs=107.2
Q ss_pred EEEccCCCEEEEEEcC----------C-EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 424 VMWSPDGTLFGVAYSK----------H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 424 l~~spdg~~l~s~~~d----------g-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
++.+|.|..+|....+ . .|.||+.... .+... .+.. +.+.++.|+.+.. |+.-..||.++++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i-~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSI-PWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEE-EECC--CCEEEEEECCCCe---EEEEEcCCEEEEE
Confidence 4556666666655333 2 5888987654 34322 2333 8899999998665 7778899999999
Q ss_pred ECCCCceEEEec--cCCCCeEEE-ee--eccCCccEEEEEecCCeEEEEe-CCCCCceeEe-eCCCC--------ceE-E
Q 002196 493 DAVTGTKQYIFE--GHESPVYSI-CP--HHKENIQFIFSTATDGKIKAWL-YDNLGSRVDY-DAPGH--------SST-M 556 (954)
Q Consensus 493 d~~~~~~~~~~~--~~~~~v~~~-~~--~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~-~~~~~--------~v~-~ 556 (954)
|+. |+....+. .....|... .+ ....+| ++.-..++.+.+.. .......... ..... ... .
T Consensus 107 ~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i 183 (410)
T PF04841_consen 107 DLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVI 183 (410)
T ss_pred eCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccc
Confidence 976 33311111 111122211 11 111233 33333445444332 2211010011 00000 000 0
Q ss_pred EEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE
Q 002196 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 636 (954)
..++.+....+....++ .+.+.+...... +. ...++..+++||++++++.-..+|.+.+....-.+.+..+
T Consensus 184 ~~l~~~~~~~i~~~~g~----~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 184 PLLSSDRVVEILLANGE----TIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred eEeecCcceEEEEecCC----EEEEEEcccccc---cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 12333333333322111 133222211111 11 1237899999999999999999999999987666666666
Q ss_pred ecCCCCCCcceEEECCCC
Q 002196 637 DADGGLQASPCIRFNKEG 654 (954)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~ 654 (954)
.... ......+.|.-+.
T Consensus 255 ~~~~-~~~p~~~~WCG~d 271 (410)
T PF04841_consen 255 DTDS-KSPPKQMAWCGND 271 (410)
T ss_pred ecCc-CCCCcEEEEECCC
Confidence 5442 2345677776544
No 370
>PRK10115 protease 2; Provisional
Probab=97.29 E-value=0.55 Score=55.55 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=123.8
Q ss_pred CCeEEEEEccCCCEEEEEEcC-----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----Ce
Q 002196 419 ASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RV 488 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~ 488 (954)
-.+..+.|||||++|+.+... ..|++.|+.+|..+.. .+.+ .-..++|++|++.+ +++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~---~~~~~~w~~D~~~~-~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN---VEPSFVWANDSWTF-YYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC---cceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence 456778999999999877432 3588889988763321 1222 11469999999863 4443322 47
Q ss_pred EEEEECCCC--ceEEEeccCCCCeEEEeeeccCCccEEEEEec---CCeEEEEeCCC--CCceeEeeCCCCceEEEEECC
Q 002196 489 IKVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDN--LGSRVDYDAPGHSSTMMAYSA 561 (954)
Q Consensus 489 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~ 561 (954)
|+.+++.++ +....+........ +......++.+++..+. ++.+.+++... ................+. +
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 888899888 43444443333333 22222223455554433 34688888532 222222322223223322 2
Q ss_pred CCCEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecC-CCCCeEEEEEeCCCCEEEEEECCCeEEEE--ECCCCceeEEEe
Q 002196 562 DGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFW--DMDNVNLLASID 637 (954)
Q Consensus 562 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~ 637 (954)
.+..++..+..+.....|...++.. ++. ..+..+ ....+..+.+. .+..+++...+|.-+++ +..+ ..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~-~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT-REVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC-CceEEec
Confidence 2344444443333344555556652 322 233333 33367777776 33455555566655554 4433 3334443
Q ss_pred cCCCCCCcceEEEC--CCCC-EEEEEeC---CCcEEEEEccCC
Q 002196 638 ADGGLQASPCIRFN--KEGI-LLAVSTN---DNGIKILANADG 674 (954)
Q Consensus 638 ~~~~~~~v~~v~~s--~~~~-~l~s~~~---dg~i~iwd~~~~ 674 (954)
... ...+..+.++ +++. ++++.+. -+.+..+|+.++
T Consensus 355 ~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 1122223344 3333 4443332 367888888765
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.27 E-value=0.081 Score=56.60 Aligned_cols=217 Identities=12% Similarity=0.075 Sum_probs=117.1
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC----CCEEEEEEc----------CCEEEE
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTLFGVAYS----------KHIVHL 444 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l~s~~~----------dg~i~i 444 (954)
+.|++.|..+.+.+....+. -..+-..+..+.+..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 35888888888776543332 1112223333444433 467887753 288999
Q ss_pred EEeeCC----cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eEEEec-cCCCCeEEEeeecc
Q 002196 445 YTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFE-GHESPVYSICPHHK 518 (954)
Q Consensus 445 wd~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~~~~ 518 (954)
+++... ..++.... ....++|++++-- ++. ++++. .+.|.+|++...+ ....-. .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 22332222 3457889998877 343 33333 3799999988877 433222 123356666544
Q ss_pred CCccEEEEEecCCeEEEEeCCCCCc-ee--EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-------C-
Q 002196 519 ENIQFIFSTATDGKIKAWLYDNLGS-RV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-------G- 587 (954)
Q Consensus 519 ~~~~~l~s~s~dg~i~iwd~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-------~- 587 (954)
+ ++++.|.....+.++.++.... .. ........++++.|-++++.++++.. .+. +.++.... +
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~--~gn--l~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK--DGN--LFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET--TSE--EEEEEE-SS-SSTTTTT
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC--CCe--EEEEEECCCCccccccc
Confidence 3 5899999888888876554332 22 22333447888888877765655543 233 55554331 1
Q ss_pred -eEEEEEecCCCCCeEEE---EEeC--CCC------EEEEEECCCeEEE
Q 002196 588 -AVKRTYHGLGKRSVGVV---QFDT--TKN------RFLAAGDEFMIKF 624 (954)
Q Consensus 588 -~~~~~~~~~~~~~i~~~---~~~~--~~~------~l~~~~~dg~i~i 624 (954)
+.......|-+..|.++ ++.| .+. .++.++.+|.|.+
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333333434466666 4344 121 3666777777763
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.26 E-value=0.12 Score=55.31 Aligned_cols=219 Identities=14% Similarity=0.110 Sum_probs=116.6
Q ss_pred CEEEEEEeeCCcceeeeeeeecccCCEEEE---EEecCC--CceEEEEEcC----------CCeEEEEECCCC----ceE
Q 002196 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDL---AFSYPN--KQLSVVTCGE----------DRVIKVWDAVTG----TKQ 500 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~---~~s~~~--~~~~l~s~~~----------dg~i~iwd~~~~----~~~ 500 (954)
..|++.|..+.+.+.. ..+.... .+.++ .+..+. +..+++.|.. .|.|.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~~-~~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDS-FELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEE-EEEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEE-EECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 3577888777665532 2344322 23333 333221 1225665543 289999999884 222
Q ss_pred EEe--ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC--CCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 501 YIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 501 ~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
..+ ....++|++++.. . .+++.+ ..+.|.+|++........... ....+.++.. .+.+++++...+ .
T Consensus 80 ~~i~~~~~~g~V~ai~~~--~--~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~--s 150 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF--N--GRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMK--S 150 (321)
T ss_dssp EEEEEEEESS-EEEEEEE--T--TEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSS--S
T ss_pred EEEEEEeecCcceEhhhh--C--CEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEccc--C
Confidence 211 2357889998855 2 244433 358899999988772222211 2224555554 456788775433 3
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-------Cc--eeEEEecCCCCCCcce
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------VN--LLASIDADGGLQASPC 647 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~--~~~~~~~~~~~~~v~~ 647 (954)
..+.-|+....+....-.......+.++.|-++++.++++..+|.+.++.... +. .......+- ...|++
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~ 229 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNS 229 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccce
Confidence 34445665433333333333333678888886667999999999999998763 22 222222222 235666
Q ss_pred E---EECC--CC------CEEEEEeCCCcEEEEE
Q 002196 648 I---RFNK--EG------ILLAVSTNDNGIKILA 670 (954)
Q Consensus 648 v---~~s~--~~------~~l~s~~~dg~i~iwd 670 (954)
+ .+.| .+ ..++.++.+|.|.+.-
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 6 4445 12 2477888999988543
No 373
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0028 Score=64.93 Aligned_cols=112 Identities=11% Similarity=0.148 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc----------HHHHHHHHhcccHHHHHHHHccCC-CcCCCccchhHH
Q 002196 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN----------MRYFEDMVTNGEWDEVEKYLSGFT-KVDDNRYSMKIF 73 (954)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~ 73 (954)
++.+..+|..++...|....+..|.+|+|...+ +.++.+++..||-.-|+..+..-. .+.. ....+-
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE 193 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLE 193 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHH
Confidence 445689999999999999999999999998763 788999999999999988876641 1111 112388
Q ss_pred HHHHHHHHHHHHhcCCHH--HHHHHHHHhcccccccChHHHHHHHHh
Q 002196 74 FEIRKQKYLEALDKRDRA--KAVEILVKDLKVFSAFNEDLFKEITQL 118 (954)
Q Consensus 74 ~~i~~~~~~ell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (954)
|.+..+.|++++..+... +|+...|..++|+.......++.+-..
T Consensus 194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 999999999999998877 999999999999876554555555443
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.19 Score=52.36 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=120.8
Q ss_pred EEccCCCEEE-EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 425 MWSPDGTLFG-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 425 ~~spdg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
.|.++...|+ +--..+.|.-|+..+++.. .+. +.+.+.++..-..+. .|+++.. -+.+++.+++..+..+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VFP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EEE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEe
Confidence 4667666444 4445678888988866432 222 334455555554554 3555543 4566776666553332
Q ss_pred cc-----CCCCeEEEeeeccCCccEEEEEec------C---CeEEEEeCC-CCCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 504 EG-----HESPVYSICPHHKENIQFIFSTAT------D---GKIKAWLYD-NLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 504 ~~-----~~~~v~~~~~~~~~~~~~l~s~s~------d---g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
.. -....+...+.+++ .+.++... + ..=.+|-++ ..........+-...+.++||||++.++.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 21 11334455555554 33333222 0 011344444 22333333322345678999999998888
Q ss_pred EEeCCCCceEEEEEeCCC--C----eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCceeEEEecCCC
Q 002196 569 CGTNKEGESYLVEWNESE--G----AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 641 (954)
+-.. ...|..|+... + +.............-.++...+|.+.+++..+| .|.+|+.. |+++..+..+.
T Consensus 180 aDT~---~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~- 254 (307)
T COG3386 180 ADTP---ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV- 254 (307)
T ss_pred EeCC---CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence 7432 34566666541 2 111112211222455677888888876554444 99999998 99999998763
Q ss_pred CCCcceEEEC-CCCCEEEEEe
Q 002196 642 LQASPCIRFN-KEGILLAVST 661 (954)
Q Consensus 642 ~~~v~~v~~s-~~~~~l~s~~ 661 (954)
..+++++|- |+.+.|.+.+
T Consensus 255 -~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 255 -KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -CCCccceEeCCCcCEEEEEe
Confidence 467777774 3445554443
No 375
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.20 E-value=0.00013 Score=78.39 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=105.1
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce--eEeeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCC
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR--VDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
.+.|+++....+...++.|..+|.|-+-..+..... .....+....++++|++ |...|+++-.....+..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 355666555554467888888999988877654433 22333445788999987 455666664433446679999998
Q ss_pred CC--eE--EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CceeEEEecCCCCCCcceEEECC-CCCEEEE
Q 002196 586 EG--AV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNK-EGILLAV 659 (954)
Q Consensus 586 ~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s 659 (954)
++ .+ ...|.+.......+++|..+.+.+++|.....+.++|++. ......+. ...+..+..+| .+.++++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCceec
Confidence 76 22 1223332222456788888888999999888999999873 22222222 22466788888 7778876
Q ss_pred EeCCCcEEEEEc
Q 002196 660 STNDNGIKILAN 671 (954)
Q Consensus 660 ~~~dg~i~iwd~ 671 (954)
-. ||.|-+||.
T Consensus 214 ~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 214 NS-DGDIAIWDT 224 (783)
T ss_pred cc-cCceeeccc
Confidence 65 899999994
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0018 Score=69.93 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=78.9
Q ss_pred CCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCee-EEEecCCCCceEEEEecCccEEEEeccccceE
Q 002196 843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (954)
Q Consensus 843 ~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~ 920 (954)
...+.-+.|+|.-.++|.+. +|.|-+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|+.+|..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 34677889999999999998 8999999987 888889887887877 999999 9999999999999999999999877
Q ss_pred EEe-cCCccceeEEEEe
Q 002196 921 TKL-KGHQKRITGLAFS 936 (954)
Q Consensus 921 ~~~-~~h~~~V~~l~~s 936 (954)
... ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 763 2344678888886
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0022 Score=69.36 Aligned_cols=93 Identities=17% Similarity=0.444 Sum_probs=71.7
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE-EEEEccCCCEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN-RVMWSPDGTLFGV 435 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s 435 (954)
..|.-+.|+|.-. ++|.+..+|.|.+..+.- + ++|++ .-|...++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-q-------Rlwti------------p~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNW-Q-------RLWTI------------PIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEecc-c-------eeEec------------cCCCCccceeeeecCCCCEEEE
Confidence 4688899999988 999999999999988773 2 23443 22555666 9999999999999
Q ss_pred EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEe
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s 472 (954)
|-.||+|++.|++++..+... ...-...|.++-|.
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 999999999999998766521 12244567777776
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.08 E-value=0.95 Score=52.58 Aligned_cols=427 Identities=11% Similarity=0.061 Sum_probs=205.4
Q ss_pred CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec--cCCCCeEEEeeeccCCc----cEEEEEecCCeEEEEe
Q 002196 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENI----QFIFSTATDGKIKAWL 537 (954)
Q Consensus 464 ~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~----~~l~s~s~dg~i~iwd 537 (954)
+.++....+.+.. .++.++.++.+...++..+. ++... .....|.|+.++|-+++ .+++.|..+..+.+.-
T Consensus 488 ~~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 488 GKITIGVVSANAS--QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT 564 (1096)
T ss_pred CceEEEEEeecce--EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence 3344444444555 46777777788888877666 22222 23567888888876543 3678887776655443
Q ss_pred CCCCCceeEee-CC----CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCCC
Q 002196 538 YDNLGSRVDYD-AP----GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKN 611 (954)
Q Consensus 538 ~~~~~~~~~~~-~~----~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 611 (954)
........... .. ...+.-..+-.|..+|+++..|| .-.-.++|..+|..-..-+.+ ...++.--.|+..++
T Consensus 565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG--~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~ 642 (1096)
T KOG1897|consen 565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG--ALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSR 642 (1096)
T ss_pred ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCc--eEEEEEEEcccceEccccccccCCCCcEEEEEeeCCc
Confidence 32222222211 11 12344455666678888876543 444556777777653322211 111444445665555
Q ss_pred EEEEEECCCeEEEEECCCCceeEEEecCCCCCCcc-eEEECCC--CCEEEEEeCCCcEEEEEccCCCe-eEEEecccccc
Q 002196 612 RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP-CIRFNKE--GILLAVSTNDNGIKILANADGIR-LLRTVESRTFD 687 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 687 (954)
.-+.+..|+-..+|.-+..-....+... .+. -+.|+.+ +..++++. .+.+++.-+..-++ ..+++.-+...
T Consensus 643 t~vfa~sdrP~viY~~n~kLv~spls~k----ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~p 717 (1096)
T KOG1897|consen 643 TAVFALSDRPTVIYSSNGKLVYSPLSLK----EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESP 717 (1096)
T ss_pred eEEEEeCCCCEEEEecCCcEEEeccchH----HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCCh
Confidence 4444445555555554332222222211 111 1233332 23455543 44666665543211 11222111100
Q ss_pred ceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccc---ccccccccccccCCCc
Q 002196 688 ASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV---EKSRIWKLTEITEPSQ 764 (954)
Q Consensus 688 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d---~~i~iw~~~~~~~~~~ 764 (954)
.++..... ...+... .......+. + .+.. ..++++|-++.+.
T Consensus 718 -rrI~~q~~--sl~~~v~------------------------s~r~e~~~~--~---~~ee~~~s~l~vlD~nTf~v--- 762 (1096)
T KOG1897|consen 718 -RRICYQES--SLTFGVL------------------------SNRIESSAE--Y---YGEEYEVSFLRVLDQNTFEV--- 762 (1096)
T ss_pred -hheEeccc--ceEEEEE------------------------ecccccchh--h---cCCcceEEEEEEecCCceeE---
Confidence 00000000 0000000 000000000 0 0111 2455555443111
Q ss_pred eeEEecCCCCCccceEEEEEecC-CceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCC
Q 002196 765 CRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPE 843 (954)
Q Consensus 765 ~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 843 (954)
.....+........+.+..|..| +.++++|.. .+| |+-.....+.+.++....+..+.. .....-.
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~----~v~--------Pde~ep~~GRIivfe~~e~~~L~~-v~e~~v~ 829 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTG----LVY--------PDENEPVNGRIIVFEFEELNSLEL-VAETVVK 829 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEE----eec--------cCCCCcccceEEEEEEecCCceee-eeeeeec
Confidence 11111111112334555558887 677777653 233 222222223333333333111110 0000012
Q ss_pred CCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEecc--ccceEE
Q 002196 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKT 921 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~--~~~~~~ 921 (954)
+.+.++.. -+|+++| |=+..|++|+..+.+.++.-..|..++..+...- .|..+|+|.-=+.+.+--.+ .|....
T Consensus 830 Gav~aL~~-fngkllA-~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVE-FNGKLLA-GINQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhh-hCCeEEE-ecCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEE
Confidence 33333322 2566555 3378899999988877777777888999999988 89999999888877765544 444444
Q ss_pred Eec-CCccceeEEEEecCCCeEEEecCCccee
Q 002196 922 KLK-GHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 922 ~~~-~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
.-+ .+..+.+++.+-.+..++. +..+|.+.
T Consensus 907 vArD~~p~Wmtaveil~~d~ylg-ae~~gNlf 937 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDTYLG-AENSGNLF 937 (1096)
T ss_pred eehhhCccceeeEEEecCceEEe-ecccccEE
Confidence 333 4778888888876655544 45555443
No 379
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.04 E-value=0.17 Score=48.18 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=62.8
Q ss_pred EEEEEecCCceEEEeec-CCeEEEeec--cCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCC
Q 002196 780 SRLIYTNSGLAILALAS-NAVHKLWKW--PRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (954)
Q Consensus 780 ~~~~~spdg~~l~~~~~-dg~v~lw~~--~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 856 (954)
..++|+.|.+.+....+ +-+|.-||. +++..+.. -.++|++..+..... ..-.+++..+|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--------~~i~dlrk~~~~e~~--------~PDGm~ID~eG~ 224 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--------KVIFDLRKSQPFESL--------EPDGMTIDTEGN 224 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCc--------ceeEEeccCCCcCCC--------CCCcceEccCCc
Confidence 34667766665555443 566766773 33222111 113344443332211 122455666888
Q ss_pred eEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecC
Q 002196 857 YVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 894 (954)
Q Consensus 857 ~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 894 (954)
+.++.- .++|.-.|..+|+.+.+++-+...|+++||--
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 777666 78999999999999999999999999999954
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.04 E-value=0.39 Score=51.97 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=57.9
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC-----------------CEE-E
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-----------------NRF-L 614 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~l-~ 614 (954)
.+.+++.+|++++.++. | .-+.|.++|..++..++..++..+..+.-+.....+ .+| +
T Consensus 309 ~~~~i~~sP~~~laA~t--D--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT--D--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE--c--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 57889999998876664 2 245699999999999998888766444333222111 122 2
Q ss_pred EEECCCeEEEEECCCCceeEEEecC
Q 002196 615 AAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 615 ~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
-+-.-|.|.||.+++|..+..+...
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEeC
Confidence 3447889999999999888887653
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.97 E-value=0.16 Score=54.92 Aligned_cols=83 Identities=7% Similarity=0.136 Sum_probs=59.0
Q ss_pred CCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCC-eeEEEecCCCC----------------c-eEEE
Q 002196 842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDN----------------N-IIAI 902 (954)
Q Consensus 842 ~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~d~----------------~-~las 902 (954)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|-.+. +.-+....... . +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 456688999999999888876 499999999999999888875443 11111111011 1 3444
Q ss_pred EecCccEEEEeccccceEEEec
Q 002196 903 GMEDSSIQIYNVRVDEVKTKLK 924 (954)
Q Consensus 903 gs~dg~i~iwd~~~~~~~~~~~ 924 (954)
+-.-|.|.||.+++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 6678899999999998877665
No 382
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.96 E-value=0.0018 Score=43.21 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=34.1
Q ss_pred ccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEe
Q 002196 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (954)
Q Consensus 874 ~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd 913 (954)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778889999999999 789999999999999996
No 383
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.96 E-value=0.026 Score=65.42 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCeEEEEECCCCceEEEeccCCCC-eEEEeeeccC---CccEEEEEecCCeEEEEeCCCCCceeE-ee-
Q 002196 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP-VYSICPHHKE---NIQFIFSTATDGKIKAWLYDNLGSRVD-YD- 548 (954)
Q Consensus 475 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~- 548 (954)
.+.++|........|+-.|+.+|+.+..+..|... |..++..... +..-.+.|-.+..+..||.+..+.... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33323444456688999999999999999987754 6666532110 113467777888999999987653222 11
Q ss_pred ---CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 549 ---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 549 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
.......|++-+.+| +|++|+.+|+ |++||--..+....+.+... +|..+..+.||+++++.+. ..|.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~----IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGD----IRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCc----EEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEE
Confidence 123467888888777 5777776555 99999433233333444444 9999999999999998875 466666
Q ss_pred EC
Q 002196 626 DM 627 (954)
Q Consensus 626 d~ 627 (954)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
No 384
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.90 E-value=0.025 Score=65.62 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=54.7
Q ss_pred ccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCC
Q 002196 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (954)
Q Consensus 776 ~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 855 (954)
....+|++-+.+|. ||+|+.+|.||+||- .|..-...+++ -..+|..|..+.||
T Consensus 577 ~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-----------------------~g~~AKT~lp~--lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 577 KNNFSCFATTEDGY-IAVGSNKGDIRLYDR-----------------------LGKRAKTALPG--LGDPIIGIDVTADG 630 (794)
T ss_pred CCCceEEEecCCce-EEEEeCCCcEEeecc-----------------------cchhhhhcCCC--CCCCeeEEEecCCC
Confidence 34567888888886 999999999999961 11122223554 67999999999999
Q ss_pred CeEEEecCCeEEEEEc
Q 002196 856 SYVMSASGGKISLFNM 871 (954)
Q Consensus 856 ~~la~~sdg~i~iwd~ 871 (954)
+|+++.++..+.++++
T Consensus 631 kwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATCKTYLLLIDT 646 (794)
T ss_pred cEEEEeecceEEEEEE
Confidence 9999988988888886
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.87 E-value=1.6 Score=51.76 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=116.6
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCC--------eEEEeeecc--------------CCccEEEEEecCCeEEEE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP--------VYSICPHHK--------------ENIQFIFSTATDGKIKAW 536 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~iw 536 (954)
.++.++.++.|.-.|..+|+.+..+...... ...+.+... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 3666777788888888888877766532211 111222111 122478889999999999
Q ss_pred eCCCCCceeEeeCCCC------------ceEEEEECC--CCCEEEEEEeCCC------CceEEEEEeCCCCeEEEEEecC
Q 002196 537 LYDNLGSRVDYDAPGH------------SSTMMAYSA--DGARLFSCGTNKE------GESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 537 d~~~~~~~~~~~~~~~------------~v~~~~~s~--~g~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
|.++++....+...+. ....+.-.| .+..+++++...+ ..+.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998887765432111 000111112 1345555543222 2467999999999998877531
Q ss_pred C---------C-------C-CeEEEEEeCCCCEEEEEE------------------CCCeEEEEECCCCceeEEEecCCC
Q 002196 597 G---------K-------R-SVGVVQFDTTKNRFLAAG------------------DEFMIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 597 ~---------~-------~-~i~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 641 (954)
. + . .-...++.++...++.+. ..+.|.-.|.++|+....++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 0 012245555555544422 234677778889988877765221
Q ss_pred C-------CCcceEEECC-CCC---EEEEEeCCCcEEEEEccCCCeeEEE
Q 002196 642 L-------QASPCIRFNK-EGI---LLAVSTNDNGIKILANADGIRLLRT 680 (954)
Q Consensus 642 ~-------~~v~~v~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~ 680 (954)
. ....-+.+.. +|+ .++.++.+|.++++|-.+| +.+..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~ 484 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVP 484 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEee
Confidence 0 0111122322 553 7889999999999999999 44433
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.86 E-value=0.096 Score=60.10 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=124.0
Q ss_pred cCCCEEEEEEcC------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC------CeEEEEECC
Q 002196 428 PDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAV 495 (954)
Q Consensus 428 pdg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d------g~i~iwd~~ 495 (954)
..+..++.||.+ ..+..||..++.-.. ...+. +...-.+++... +. +.++||.| .++..||..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence 345566666666 357788887764221 11222 222344555553 44 68888888 367788988
Q ss_pred CCceEEE--eccCCCCeEEEeeeccCCccEEEEEecCCe-----EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 496 TGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGK-----IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 496 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
+++.... +....... +++. -+|...+.|+.||. +-.||..+.+-...-......-..-...-+|+..++
T Consensus 358 ~~~W~~~a~M~~~R~~~-~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDF-GVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred CCceeccCCccCccccc-eeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEE
Confidence 7764431 11111111 1111 12367888888865 666776654432222111111111112236777777
Q ss_pred EEeCCCCc--eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCceeEEEecCCC
Q 002196 569 CGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 569 ~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 641 (954)
||.++..+ ..+..||+.+......-.-.....-..++. -++...+.||.|+ +|..||..+.+....-.....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 77665532 568899998876543322221111222332 3566777777665 377888877665544322222
Q ss_pred CCCcceEEECCCCCEEEEEeCCC-----cEEEEEccCC
Q 002196 642 LQASPCIRFNKEGILLAVSTNDN-----GIKILANADG 674 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s~~~dg-----~i~iwd~~~~ 674 (954)
...+..+.+ ++.+.++|+.|| +|..||..++
T Consensus 513 rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 513 RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 222222333 567788888775 4556665554
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.04 Score=58.66 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=95.5
Q ss_pred CCCEEE-EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceE-----EEEEcCCCeEEEEECCCCc--eE
Q 002196 429 DGTLFG-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS-----VVTCGEDRVIKVWDAVTGT--KQ 500 (954)
Q Consensus 429 dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~-----l~s~~~dg~i~iwd~~~~~--~~ 500 (954)
+.++|+ ++.....++-.|++.|+.+. ...-|.. |+-+.+.|+.+.-. -+.|-.|..|.-||.+-.. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 34445668888999998776 4444544 77788888754211 2456678899999987332 23
Q ss_pred EEeccCC----CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 501 YIFEGHE----SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 501 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
..-++|. ....|.+ ..++ .+++.||.+|.|++||--.......+.+-+.+|..+..+.+|++|++.+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFA--TTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceee--ecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 2233332 2233333 3344 4899999999999999744444556777788999999999999998876 4
Q ss_pred eEEEEEeC
Q 002196 577 SYLVEWNE 584 (954)
Q Consensus 577 ~~i~iwd~ 584 (954)
.++.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 45666654
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.80 E-value=0.081 Score=60.65 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=93.3
Q ss_pred CCeeEEEEcCCCCeEEEEEE-----cCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 357 SAVKSMDFHPVQQILLVVGT-----NMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
..+...++||||+.++++.. .|+ .|.+++..... .. +..+ ...+.-.|+||
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~-------------------lt~g--~~~t~PsWspD 407 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ-------------------VLEG--HSLTRPSWSLD 407 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee-------------------eecC--CCCCCceECCC
Confidence 46889999999997766653 233 45555542221 11 1222 24788899999
Q ss_pred CCEEEEEEcC------------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE---EEC
Q 002196 430 GTLFGVAYSK------------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV---WDA 494 (954)
Q Consensus 430 g~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i---wd~ 494 (954)
|+.|++.... +.+.+.+++.++... ...+.|..+.|||||.++.+++ ++.|++ -..
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~ 478 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQT 478 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeC
Confidence 9988877543 223333333332111 2346799999999999854444 467777 443
Q ss_pred CCCce-E---EEec-cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-eC--CCCceEEEEECC
Q 002196 495 VTGTK-Q---YIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DA--PGHSSTMMAYSA 561 (954)
Q Consensus 495 ~~~~~-~---~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~--~~~~v~~~~~s~ 561 (954)
..|.. + ..+. +-...+.++.|..+. . |+.+..++...+|.+.-....... .. ....+..++-++
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 44541 1 1122 223335777887554 4 455555555555554433332222 11 123555666555
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.039 Score=58.75 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=98.0
Q ss_pred CCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEE-----EEEecCCeEEEEeCCCCCc-eeE-e
Q 002196 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-----FSTATDGKIKAWLYDNLGS-RVD-Y 547 (954)
Q Consensus 475 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-----~s~s~dg~i~iwd~~~~~~-~~~-~ 547 (954)
...+++.++.....++-.|+..|+.+..+.-+.. |+-+.+.|+..+..+ +.|-.|..|.-||.+-... ... .
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3344566777778899999999999999987766 666666666544333 4466788899999885444 111 1
Q ss_pred eC----CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEE
Q 002196 548 DA----PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIK 623 (954)
Q Consensus 548 ~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 623 (954)
.. ......|.+-..+| ++++++.+|+ |++||--..+....+++... +|..+..+.+|++|++.+. ..+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLL 495 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEE
Confidence 11 12356677666666 6777877665 99999633333344555555 8999999999999887764 4555
Q ss_pred EEEC
Q 002196 624 FWDM 627 (954)
Q Consensus 624 iwd~ 627 (954)
+.++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5553
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.78 E-value=0.02 Score=65.46 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=81.8
Q ss_pred cceEEEEEecCCceEEEee------cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEE
Q 002196 777 MRVSRLIYTNSGLAILALA------SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (954)
Q Consensus 777 ~~v~~~~~spdg~~l~~~~------~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~ 850 (954)
..+.+.+++|||+.++... .|+.-.||-.. . .+.... ...+ ...+...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~--------------------~-gg~~~~-lt~g----~~~t~Ps 403 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGP--------------------L-GGVAVQ-VLEG----HSLTRPS 403 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEe--------------------C-CCccee-eecC----CCCCCce
Confidence 3577899999999888776 24445555322 1 111111 1112 2377889
Q ss_pred eccCCCeEEEecCC-------------eEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEE---Eec
Q 002196 851 LSKNDSYVMSASGG-------------KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI---YNV 914 (954)
Q Consensus 851 ~s~dg~~la~~sdg-------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~i---wd~ 914 (954)
|||||+.|++..|+ .+.+.++..++... ...+.|..+.||| ||..||... +|.|++ -..
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence 99999988777543 23333444333322 2345799999999 898888766 577777 443
Q ss_pred cccce-E---EEec-CCccceeEEEEecCCCeEE
Q 002196 915 RVDEV-K---TKLK-GHQKRITGLAFSNTLNVLV 943 (954)
Q Consensus 915 ~~~~~-~---~~~~-~h~~~V~~l~~s~dg~~l~ 943 (954)
..|+. + ..+. +-...+.++.|..++..++
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEEE
Confidence 44541 1 1122 2223468899999998554
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.73 E-value=1.2 Score=48.39 Aligned_cols=277 Identities=11% Similarity=0.163 Sum_probs=145.8
Q ss_pred cCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-----CCCEEEEEEcC
Q 002196 365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-----DGTLFGVAYSK 439 (954)
Q Consensus 365 sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~l~s~~~d 439 (954)
+++++..+++|+..|.++||+...+......-+ +...-..+|..++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 345556889999999999999865442211000 0122346777776543 2334554 456
Q ss_pred CEEEEEEeeCC-------cceeeeeeeeccc--CCEEEEEEecC----CCceEEEEEcCCCeEEEEECCCCceEEEecc-
Q 002196 440 HIVHLYTYHGG-------DELRNHLEIEAHV--GSVNDLAFSYP----NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG- 505 (954)
Q Consensus 440 g~i~iwd~~~~-------~~~~~~~~~~~h~--~~v~~~~~s~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 505 (954)
..+.||.+... .... ...+..|. .....+++-|= ++. ++..-+.||.+.+++-+.-...+.+..
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 77888887321 1111 11222332 22334444332 233 688899999999999555443444433
Q ss_pred -CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-------------------e----eEeeCCCCc---eEEEE
Q 002196 506 -HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-------------------R----VDYDAPGHS---STMMA 558 (954)
Q Consensus 506 -~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------------------~----~~~~~~~~~---v~~~~ 558 (954)
..++ +++.+.. +.+++++.+..+..|....... . ..+.. +.. +..+.
T Consensus 175 llPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~ 248 (418)
T PF14727_consen 175 LLPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVR 248 (418)
T ss_pred CCCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEE
Confidence 2333 4555555 4788998888888886421100 0 01111 112 23333
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC----CC---CEEEEEECCCeEEEEECCCCc
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT----TK---NRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~ 631 (954)
++.....+++-+ +..+.+.+. +|......+- .-.+.....+.. ++ ..++.++.++++.||.= .+
T Consensus 249 ~~~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~ 319 (418)
T PF14727_consen 249 FSSSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TT 319 (418)
T ss_pred cCCCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--Ce
Confidence 433334444444 334666664 4544433332 211222222221 22 24888899999999863 34
Q ss_pred eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.+.........-.+.-..|..-...|++-+.+|.+.+-=+.|.
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 4444433211112222223333458888889999988766654
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.068 Score=45.03 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=63.7
Q ss_pred EEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEE
Q 002196 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (954)
Q Consensus 363 ~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i 442 (954)
.|.-||..-|++|+.|..|++|+-.. .+.+ -.-.+.|+++.-... ..++.+..+|+|
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y~l~NGTV 65 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAYALANGTV 65 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEEEecCCEE
Confidence 34456777899999999999998553 2221 113467888887766 668889999999
Q ss_pred EEEEeeCCcceeeeeeeecccCCEEEEEEec---CCCceEEEEEcCCCeEE
Q 002196 443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~~~l~s~~~dg~i~ 490 (954)
-+|+-... +. ..+. ...++++++.. ||.. -|++|-.+|.|-
T Consensus 66 GvY~~~~R--lW---RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQR--LW---RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcce--ee---eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99875321 22 1222 22355665543 3333 488888888764
No 393
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.68 E-value=0.061 Score=45.32 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=68.8
Q ss_pred ccEEEecc---CC-CeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceE
Q 002196 846 VPCFALSK---ND-SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (954)
Q Consensus 846 v~~~~~s~---dg-~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~ 920 (954)
|+++++.. || ..|++|+ |..|++|+-. +.+.++. -.+.|++++-.. . ..++.|..+|+|-+|+-. +.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLG-G-GRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcC-C-CEEEEEecCCEEEEEeCc--cee
Confidence 56666654 32 4677777 9999999854 6667766 456788888876 4 578899999999999853 333
Q ss_pred EEecCCccceeEEEEec---CC-CeEEEecCCcceec
Q 002196 921 TKLKGHQKRITGLAFSN---TL-NVLVSSGADSQVRN 953 (954)
Q Consensus 921 ~~~~~h~~~V~~l~~s~---dg-~~l~s~s~Dg~I~i 953 (954)
-+.+.. ..++++.+.. || +-|++|=.+|.|-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444422 3366766653 33 36899999998753
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.66 E-value=1.2 Score=47.48 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=72.0
Q ss_pred cEEEEEe-cCCeEEEEeCCCCCcee----EeeC---CC----CceEEEEECCCCCEEEEEEeC--CCCceEEEEEeCCCC
Q 002196 522 QFIFSTA-TDGKIKAWLYDNLGSRV----DYDA---PG----HSSTMMAYSADGARLFSCGTN--KEGESYLVEWNESEG 587 (954)
Q Consensus 522 ~~l~s~s-~dg~i~iwd~~~~~~~~----~~~~---~~----~~v~~~~~s~~g~~l~~~~~~--~~~~~~i~iwd~~~~ 587 (954)
++|+..+ ..+.|++.|+.+..... .+.. .. .....+..-|+|+.++++-.+ +++.+-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5676666 67889999988543221 1111 00 122344556899888886544 344556888998888
Q ss_pred eEEEEEecCC--CCCeEEEEEeCCCCEEEEEE--------------------CCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 588 AVKRTYHGLG--KRSVGVVQFDTTKNRFLAAG--------------------DEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 588 ~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
+......... ...-+.+.+.|..+.+++.. ...++.+||+.+.+.++++.........
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 7777665532 22345678889888888853 1357999999999999999875322234
Q ss_pred ceEEECC--CCCE-EEEEeCCCcEEEE
Q 002196 646 PCIRFNK--EGIL-LAVSTNDNGIKIL 669 (954)
Q Consensus 646 ~~v~~s~--~~~~-l~s~~~dg~i~iw 669 (954)
..+.|.. +..+ ++.+.-...|..|
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEE
Confidence 4566654 4443 2222233444444
No 395
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.63 E-value=1.3 Score=47.38 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=39.9
Q ss_pred CeEEEEEeC-------CCCEEEEEECCCeEEEEECCCCceeEEE-ec-CCCCCCcceEEECCCCCEEEEEeCCCcEE
Q 002196 600 SVGVVQFDT-------TKNRFLAAGDEFMIKFWDMDNVNLLASI-DA-DGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (954)
Q Consensus 600 ~i~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 667 (954)
.+..+.|.. .+.++++.-..+.|...++..+..+... .. ......+..+++.|||.+.++...+|.|+
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455566653 2345555546678888887654333222 21 12223688999999999888887788764
No 396
>PRK10115 protease 2; Provisional
Probab=96.60 E-value=2.4 Score=50.24 Aligned_cols=244 Identities=11% Similarity=0.039 Sum_probs=121.9
Q ss_pred CeeEEEEcCCCCeEEEEEEcCC----eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.+..+.|||||++++.+.+.+| .|++-|+.+|+.+.. .+. ..-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~---~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLD---NVEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------ccc---CcceEEEEeeCCCEE
Confidence 4667899999996666554444 588888888763321 011 111469999999877
Q ss_pred EEEEcC------CEEEEEEeeCCcceeeeeeeecccCCEE-EEEEecCCCceEEEEEc-CCCeEEEEECC--CCceEEEe
Q 002196 434 GVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVN-DLAFSYPNKQLSVVTCG-EDRVIKVWDAV--TGTKQYIF 503 (954)
Q Consensus 434 ~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~~~l~s~~-~dg~i~iwd~~--~~~~~~~~ 503 (954)
+....+ ..|+.+++.++..-.. ..+........ .+..+.+++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 766443 3577778877621111 12333233333 33334477753222222 34578888843 34432222
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEec---CCeEEEEeCCCCCc-eeEeeCC-CCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDNLGS-RVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~-~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
.........+. +. ++ .+.+.... ...|...++..... ...+... ...+..+.+. ++.|+..... .+...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 22222222222 22 22 23333222 12344445442222 2223221 2367777776 4455554432 34556
Q ss_pred EEEEeCCCCeEEEEEe-cCCCCCeEEEEEe--CCCC-EEEEEE---CCCeEEEEECCCCc
Q 002196 579 LVEWNESEGAVKRTYH-GLGKRSVGVVQFD--TTKN-RFLAAG---DEFMIKFWDMDNVN 631 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 631 (954)
+.++|..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33333 2111 23333344 3333 444433 45789999988765
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.18 Score=58.10 Aligned_cols=187 Identities=8% Similarity=0.012 Sum_probs=92.8
Q ss_pred EEEEEcCC------CeEEEEECCCCceEEEeccCCCCe--EEEeeeccCCccEEEEEecCC-----eEEEEeCCCCCcee
Q 002196 479 SVVTCGED------RVIKVWDAVTGTKQYIFEGHESPV--YSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRV 545 (954)
Q Consensus 479 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~ 545 (954)
+++.||.+ ..+..||..+..... +..-..+. .+++.. +|...+.|+.++ .+..||..+..-..
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56667653 357788987765422 11111111 112211 225667777654 37788877543222
Q ss_pred EeeCCC--CceEEEEECCCCCEEEEEEeCCCC-------------------ceEEEEEeCCCCeEEEEEecCCCCCeEEE
Q 002196 546 DYDAPG--HSSTMMAYSADGARLFSCGTNKEG-------------------ESYLVEWNESEGAVKRTYHGLGKRSVGVV 604 (954)
Q Consensus 546 ~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 604 (954)
.-.... .....+. -+|+..+.||.++.. ...+..||+.+.+....-.-.....-.++
T Consensus 382 ~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 111111 1111222 256666666644211 23578899887765432211111011122
Q ss_pred EEeCCCCEEEEEECC------CeEEEEECCC-CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC--cEEEEEccCC
Q 002196 605 QFDTTKNRFLAAGDE------FMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN--GIKILANADG 674 (954)
Q Consensus 605 ~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg--~i~iwd~~~~ 674 (954)
+ .-++...+.||.+ ..+..||..+ .+....-...........+++ +|++.++|+.+| .+..||+.++
T Consensus 460 ~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 460 V-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred E-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 2 2346666667643 2467899887 444322222221222223333 688899999888 6777777665
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.40 E-value=0.0068 Score=40.26 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=32.8
Q ss_pred cceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 917 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
+++...+..|...|+++.|.+++.++++++.|+.+++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~ 38 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKL 38 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEE
Confidence 4566777889999999999999999999999999886
No 399
>PHA02713 hypothetical protein; Provisional
Probab=96.30 E-value=0.32 Score=56.07 Aligned_cols=196 Identities=8% Similarity=-0.056 Sum_probs=94.3
Q ss_pred cCCCEEEEEEcC------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC-----eEEEEECCC
Q 002196 428 PDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVT 496 (954)
Q Consensus 428 pdg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-----~i~iwd~~~ 496 (954)
-++...+.||.+ ..+..||..++.- .....+....... +++. -+|+ +.+.||.++ ++..||..+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~-~~~~-~~g~--IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRF-SLAV-IDDT--IYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhce-eEEE-ECCE--EEEECCcCCCCCCceEEEEECCC
Confidence 367777777753 3477788776542 1111121111112 2222 2455 567777653 588899887
Q ss_pred CceEE--EeccCCCCeEEEeeeccCCccEEEEEecCC-----------------------eEEEEeCCCCCceeEeeCCC
Q 002196 497 GTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDG-----------------------KIKAWLYDNLGSRVDYDAPG 551 (954)
Q Consensus 497 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~ 551 (954)
.+... .+.........+.+ +|...+.|+.++ .+..||..+..-...-....
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred CeEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 65432 11111111111111 235666676542 36667766543221111111
Q ss_pred CceEEEEECCCCCEEEEEEeCCCC--ceEEEEEeCCC-CeEE--EEEecCCCCCeEEEEEeCCCCEEEEEECCC--eEEE
Q 002196 552 HSSTMMAYSADGARLFSCGTNKEG--ESYLVEWNESE-GAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKF 624 (954)
Q Consensus 552 ~~v~~~~~s~~g~~l~~~~~~~~~--~~~i~iwd~~~-~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i 624 (954)
.........-+++..+.||.++.. ...+..||+.+ .+.. ..+..... ....+.+ ++...++||.+| .+..
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE--CCEEEEEeeecceeehhh
Confidence 111111122256666666543221 12467899887 4433 33332221 2222223 577888888787 6777
Q ss_pred EECCCCceeEE
Q 002196 625 WDMDNVNLLAS 635 (954)
Q Consensus 625 wd~~~~~~~~~ 635 (954)
||..+.+....
T Consensus 530 yd~~~~~W~~~ 540 (557)
T PHA02713 530 FNVYTYEWNHI 540 (557)
T ss_pred cCcccccccch
Confidence 77776554433
No 400
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.20 E-value=3.9 Score=48.23 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=60.8
Q ss_pred EEeccCCCeEEEecCCeEEEEEcccccEEEeeCC--CCCCeeEEEecCCCCceEEEEecCccEEE--EeccccceEEEec
Q 002196 849 FALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP--PPPAATFLAFHPQDNNIIAIGMEDSSIQI--YNVRVDEVKTKLK 924 (954)
Q Consensus 849 ~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~d~~~lasgs~dg~i~i--wd~~~~~~~~~~~ 924 (954)
.|..|-..++.+|-...+++||+...++.+.... -...|+.+.+ .+..+++|..--.|.+ |+-+..+.+ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 3566777788887789999999987666655432 2345777877 4567777765555554 454444433 333
Q ss_pred C--CccceeEEEEecCCCeEEEecCCccee
Q 002196 925 G--HQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 925 ~--h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
+ -...|+++.+-.. ..+|.|..=|.+.
T Consensus 1015 dD~~pR~Vt~~~~lD~-~tvagaDrfGNi~ 1043 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDY-DTVAGADRFGNIA 1043 (1205)
T ss_pred CCCccceeeEEEEecC-CceeeccccCcEE
Confidence 2 2344777666533 4566566555543
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.12 E-value=0.83 Score=52.59 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=115.7
Q ss_pred EEEEEEcC------CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC-C---
Q 002196 371 LLVVGTNM------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK-H--- 440 (954)
Q Consensus 371 ll~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d-g--- 440 (954)
+++.|+.+ ..+..+|..++....... +. +...-.+++. -++...++||.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-----------------m~-~~r~~~~~~~-~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-----------------MP-SPRCRVGVAV-LNGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC-----------------CC-cccccccEEE-ECCEEEEEccccCCCcc
Confidence 66666665 358888888875443211 11 1122233333 356788888888 3
Q ss_pred --EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC-----eEEEEECCCCceEEEeccCCCCeEEE
Q 002196 441 --IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 441 --~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
++..||..+++- .....+...........+ +|. +.+.||.|| +|-.||..+.+.-..-. ........
T Consensus 348 l~~ve~YD~~~~~W-~~~a~M~~~R~~~~v~~l--~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQW-TPVAPMNTKRSDFGVAVL--DGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCce-eccCCccCccccceeEEE--CCE--EEEEeccccccccccEEEecCCCCcccccCC-CCcceeee
Confidence 577888877652 222222222222222222 455 688899886 57778877665332211 11122222
Q ss_pred eeeccCCccEEEEEecCC------eEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeCCC-CceEEEEEeC
Q 002196 514 CPHHKENIQFIFSTATDG------KIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKE-GESYLVEWNE 584 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~-~~~~i~iwd~ 584 (954)
.... -+|...++|+.++ ++..||..+..-...-..... ... ++ .-++...+.||.++. ....+..||+
T Consensus 422 gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 422 GVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcC
Confidence 2211 2236777777554 456777665543322111111 111 22 225666677766541 1234778998
Q ss_pred CCCeEEEEEecC-CCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCce
Q 002196 585 SEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNL 632 (954)
Q Consensus 585 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 632 (954)
.+.+....-.-. ....+..+. -++...++|+.|| +|..||..+.+.
T Consensus 499 ~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 499 ETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 877654432111 111122222 2456777777665 456666555443
No 402
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.11 E-value=1.7 Score=43.43 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=116.1
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~ 494 (954)
...-...+.|..+|.++-+.+.-| .|+.+|+.+++..... .+.. ..---.++.. +.+ +..-.-.++...+||.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~--~d~-l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL--GDK-LYQLTWKEGTGFVYDP 117 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE--TTE-EEEEESSSSEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE--CCE-EEEEEecCCeEEEEcc
Confidence 344556788888898888887766 6999999999865432 2322 1122334444 333 4666778899999999
Q ss_pred CCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC--C---ceEEEEECCCCCEEEEE
Q 002196 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--H---SSTMMAYSADGARLFSC 569 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~---~v~~~~~s~~g~~l~~~ 569 (954)
.+-+.+.++. ..+.=+.++. +++.|+.......++++|..+.+....+.... . .++.+.|- +|...+-.
T Consensus 118 ~tl~~~~~~~-y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 118 NTLKKIGTFP-YPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV 191 (264)
T ss_dssp TTTEEEEEEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred ccceEEEEEe-cCCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence 9999988886 3455677762 23567777777889999988777655443322 1 45667775 55443333
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEec----------C----CCCCeEEEEEeCCCCEEEEEEC
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYHG----------L----GKRSVGVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~~----------~----~~~~i~~~~~~~~~~~l~~~~~ 618 (954)
-. ...|...|+.+|+.+..+.. . .....+.+++.|..+.++..|.
T Consensus 192 W~----td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 WQ----TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TT----SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CC----CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 22 33588899999998877631 0 1236788999998877766663
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.02 E-value=2.8 Score=44.93 Aligned_cols=268 Identities=14% Similarity=0.097 Sum_probs=113.7
Q ss_pred cceeecCCC---CCcceEEEec--C-CCCeeEEEEc-----------CCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeE
Q 002196 336 GQSSYSTDD---LPKTVVMTLN--Q-GSAVKSMDFH-----------PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (954)
Q Consensus 336 ~~~~~~~~~---~~~~~~~~~~--h-~~~V~~~~~s-----------p~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~ 398 (954)
+||+...|- +..+++..+. + .++.-..-|+ .+.++|++-|-.++.|+|.|+.+.-.... -.+
T Consensus 38 ~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~-l~K 116 (461)
T PF05694_consen 38 YLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR-LHK 116 (461)
T ss_dssp EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E-EEE
T ss_pred eEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc-eEe
Confidence 577775553 3456776654 3 3566666665 24555555555788999999985321110 111
Q ss_pred EEeccCCCccccccccC-CCCCCeEEEEEccCCCEEEEEEc--C----CEEEEEEeeCCcceeeeeeeecccCCEEEEEE
Q 002196 399 VWELGACSMPLQASLSS-DYTASVNRVMWSPDGTLFGVAYS--K----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471 (954)
Q Consensus 399 ~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~~~--d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 471 (954)
+.+.. .+.. .--..-..+-.-|+|+.++++-. + |-+.+.|-++.+....-..-.+....-..+.|
T Consensus 117 vIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~ 188 (461)
T PF05694_consen 117 VIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWY 188 (461)
T ss_dssp EE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEE
T ss_pred eeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEE
Confidence 11110 0000 00011222334468888887632 2 45777777665433311111112234567778
Q ss_pred ecCCCceEEEEEc--------------------CCCeEEEEECCCCceEEEeccCCC--CeEEEeeeccCCccE-EEEEe
Q 002196 472 SYPNKQLSVVTCG--------------------EDRVIKVWDAVTGTKQYIFEGHES--PVYSICPHHKENIQF-IFSTA 528 (954)
Q Consensus 472 s~~~~~~~l~s~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~-l~s~s 528 (954)
.|..+ +++|.. ...++.+||+.+.+.++++.--.. ....+.|..+++..+ ++.+.
T Consensus 189 qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a 266 (461)
T PF05694_consen 189 QPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA 266 (461)
T ss_dssp ETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE
T ss_pred cCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe
Confidence 88666 566653 236899999999999998864432 244566655554333 33334
Q ss_pred cCCeEEEEeC-CCCC----ceeEeeCC-----------------CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 529 TDGKIKAWLY-DNLG----SRVDYDAP-----------------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 529 ~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
...+|..|-- +.+. .+..+... ..-++.+.+|.|.++|+++..- .+.++.||+..
T Consensus 267 Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~---~GdvrqYDISD 343 (461)
T PF05694_consen 267 LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL---HGDVRQYDISD 343 (461)
T ss_dssp --EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETT---TTEEEEEE-SS
T ss_pred ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEccc---CCcEEEEecCC
Confidence 4555555533 2211 11111110 1246889999999999988752 44599999876
Q ss_pred C---eEEEEEecCC---------------CCCeEEEEEeCCCCEEEEEE
Q 002196 587 G---AVKRTYHGLG---------------KRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 587 ~---~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~ 617 (954)
. +++.++.... ......+..|.||+.++..+
T Consensus 344 P~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 344 PFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 4 3333322110 01234567777777776654
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.01 E-value=0.027 Score=39.43 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=29.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCc
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE 390 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~ 390 (954)
....|.+++|+|... ++|.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 345799999999999 9999999999999998 443
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.093 Score=60.92 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=75.8
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 508 (954)
.+..++.|+..|.+...|+.+. +.....-..-.++|++++|+.+|. .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567888988898888887764 221111223457899999999999 688999999999999999999999888887
Q ss_pred CeEEEeeec-cCCccEEEEEecCCeEEEEe
Q 002196 509 PVYSICPHH-KENIQFIFSTATDGKIKAWL 537 (954)
Q Consensus 509 ~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd 537 (954)
+..++-+.. .+.+..++++...|. +|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 777664432 233356788877776 454
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.86 E-value=2.9 Score=49.65 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=97.0
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeE-------------EEeeeccCCccEEEEEec----------CCeEEE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY-------------SICPHHKENIQFIFSTAT----------DGKIKA 535 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~s~----------dg~i~i 535 (954)
.++.++.|+.+.-.|.++|+.+..+.. .+.|. .+.-.|--.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 377888899999999999998877642 21110 000011101135666643 688999
Q ss_pred EeCCCCCceeEeeCC---------CC--------ce-EEEEECCCCCEEEEEEeCC--------------CCceEEEEEe
Q 002196 536 WLYDNLGSRVDYDAP---------GH--------SS-TMMAYSADGARLFSCGTNK--------------EGESYLVEWN 583 (954)
Q Consensus 536 wd~~~~~~~~~~~~~---------~~--------~v-~~~~~s~~g~~l~~~~~~~--------------~~~~~i~iwd 583 (954)
+|.++++....+... .. .+ ..++++++...++....+. .-...|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999998877665421 00 11 2345666655555533110 1134577789
Q ss_pred CCCCeEEEEEec-CCCC-------CeEEEEEeC-CCC---EEEEEECCCeEEEEECCCCceeEEEec
Q 002196 584 ESEGAVKRTYHG-LGKR-------SVGVVQFDT-TKN---RFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 584 ~~~~~~~~~~~~-~~~~-------~i~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
.++|+..-.++. |++. ...-+.+.. +|+ .++.++.+|.++++|.++|+.+...+.
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 999998888765 2210 111122322 453 788888999999999999998877653
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.71 E-value=0.039 Score=38.59 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD 451 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~ 451 (954)
....|.+++|+|...+||.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 4467999999999999999999999999998 443
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.65 E-value=2.7 Score=42.07 Aligned_cols=184 Identities=16% Similarity=0.058 Sum_probs=109.9
Q ss_pred CEEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEeccCC-CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHE-SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
....+.|..+|. ++-+.+.-| .|+.+|+.+|+......-.. -.-..++.. ++ ....-.=.++...+||.++.
T Consensus 46 FTQGL~~~~~g~--LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d-~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 46 FTQGLEFLDDGT--LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GD-KLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEEETTE--EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TT-EEEEEESSSSEEEEEETTTT
T ss_pred cCccEEecCCCE--EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CC-EEEEEEecCCeEEEEccccc
Confidence 355778877776 677777766 89999999998776544221 122334433 22 34455556788999999988
Q ss_pred CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC----CCeEEEEEeCCCCEEEEEE
Q 002196 542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK----RSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 542 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~ 617 (954)
+....+...+ .-..++ .|++.|+.. +|...++.+|..+.+..+.+....+ ..++-+.+- +|...+=.=
T Consensus 121 ~~~~~~~y~~-EGWGLt--~dg~~Li~S----DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 121 KKIGTFPYPG-EGWGLT--SDGKRLIMS----DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp EEEEEEE-SS-S--EEE--ECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred eEEEEEecCC-cceEEE--cCCCEEEEE----CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 7777665543 344555 466666654 3355699999998877766654321 134446665 443333333
Q ss_pred CCCeEEEEECCCCceeEEEecC-------------CCCCCcceEEECCCCCEEEEEe
Q 002196 618 DEFMIKFWDMDNVNLLASIDAD-------------GGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 618 ~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
....|...|..+|+....+... ......+.+||.|....|...+
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6668888999999998877421 0124578999998665544443
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.036 Score=64.16 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=72.9
Q ss_pred cCCCeEEEec-CCeEEEEEcccc-cEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccce
Q 002196 853 KNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 930 (954)
Q Consensus 853 ~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V 930 (954)
--+.++|.|+ .|.+-..|.... .....=..-.++|++++|+. ||++++.|-.+|.|.+||+..++.++.+..|..+.
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 3566788887 577888887531 11111122356799999999 99999999999999999999999999888777766
Q ss_pred eEEE---EecCCCeEEEecCCcce
Q 002196 931 TGLA---FSNTLNVLVSSGADSQV 951 (954)
Q Consensus 931 ~~l~---~s~dg~~l~s~s~Dg~I 951 (954)
+++- +..++..+.++..-|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCce
Confidence 6654 44566678888877753
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.54 E-value=1.9 Score=43.96 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=86.0
Q ss_pred CeeEEEEcCCCCeEEEEEEcC--CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
.+.+.++|+||+.++++...+ ..++++......... + -...+..-.|++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------------------~--~g~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------------------L--TGGSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------------------c--cCCccccccccCCCCEEEE
Confidence 688999999999766666333 345555543322111 1 2237788899999887777
Q ss_pred EEcCCEEEEEE-eeCCcceeeeeeeecccCCEEEEEEecCCCceEEEE-EcCCCeEEEEECC---CC------ceEEEec
Q 002196 436 AYSKHIVHLYT-YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT-CGEDRVIKVWDAV---TG------TKQYIFE 504 (954)
Q Consensus 436 ~~~dg~i~iwd-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s-~~~dg~i~iwd~~---~~------~~~~~~~ 504 (954)
...+...+++. ..++...........-.+.|..+.+||||.++.++. ...++.|.+=-+. .+ .......
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~ 162 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP 162 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc
Confidence 76666666664 333332221111222222899999999999854444 2334677766443 23 1112222
Q ss_pred cCCCCeEEEeeeccCCccEEEEEec
Q 002196 505 GHESPVYSICPHHKENIQFIFSTAT 529 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~ 529 (954)
.....+.++.|..+. .+++.+..
T Consensus 163 ~~~~~v~~v~W~~~~--~L~V~~~~ 185 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDS--TLVVLGRS 185 (253)
T ss_pred cccCcceeeeecCCC--EEEEEeCC
Confidence 335678889988655 45555444
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.51 E-value=2.2 Score=41.08 Aligned_cols=138 Identities=11% Similarity=0.096 Sum_probs=76.0
Q ss_pred cCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC--------CCeEEEeeeccCCccEEEEEecCCeEE
Q 002196 463 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE--------SPVYSICPHHKENIQFIFSTATDGKIK 534 (954)
Q Consensus 463 ~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~s~dg~i~ 534 (954)
....+.-..+|+|+ + ..|...-.=..+....+.+..-+.+|. .--+.++|..+.. .+.++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--y-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--Y-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAK-KFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--e-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCc-EEEEEccCceEEe
Confidence 34566677789998 3 333321111122222222222233332 2224566664432 4556667778888
Q ss_pred EEeCC--CCCc---eeEeeCCC------CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEE
Q 002196 535 AWLYD--NLGS---RVDYDAPG------HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (954)
Q Consensus 535 iwd~~--~~~~---~~~~~~~~------~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 603 (954)
-||.+ ++.. ...+.... ...-.++...+|.+.+++-. .++|...|+.+|+.+..+..... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 88844 2211 11111111 12234556667776666553 23599999999999999988766 8999
Q ss_pred EEEeCC
Q 002196 604 VQFDTT 609 (954)
Q Consensus 604 ~~~~~~ 609 (954)
++|...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999743
No 412
>PHA03098 kelch-like protein; Provisional
Probab=95.28 E-value=1.1 Score=51.97 Aligned_cols=150 Identities=7% Similarity=-0.009 Sum_probs=71.6
Q ss_pred cEEEEEecC-----CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC--ceEEEEEeCCCCeEEEEEe
Q 002196 522 QFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG--ESYLVEWNESEGAVKRTYH 594 (954)
Q Consensus 522 ~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~ 594 (954)
...+.|+.+ ..+..||..+..-..............+..-+++..+.||.+..+ ...+..||+.+.+....-.
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 566777765 246677766543221111111111111112356666666633221 2458889988765433211
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECC--------CeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC---
Q 002196 595 GLGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND--- 663 (954)
Q Consensus 595 ~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d--- 663 (954)
......-.++ ...++..++.||.+ ..+.+||..+++....-...........+.+ ++++++.|+.+
T Consensus 424 ~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~ 500 (534)
T PHA03098 424 LPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEY 500 (534)
T ss_pred CCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCc
Confidence 1111011122 22355666666632 2388899887654432211111111122222 67777777754
Q ss_pred --CcEEEEEccCC
Q 002196 664 --NGIKILANADG 674 (954)
Q Consensus 664 --g~i~iwd~~~~ 674 (954)
..+.+||+.++
T Consensus 501 ~~~~v~~yd~~~~ 513 (534)
T PHA03098 501 YINEIEVYDDKTN 513 (534)
T ss_pred ccceeEEEeCCCC
Confidence 46788887765
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.25 E-value=4.1 Score=41.57 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=42.6
Q ss_pred CeEEEEEeCCCCEEEEEE---CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 600 SVGVVQFDTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
.+.+.+++++++.++... ....++++... ....... . ...+..-.|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-c--CCccccccccCCCCEEEEEcCCCceEEEE
Confidence 578899999999887766 33456665543 3333321 1 22677889999987777666666666653
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=3.8 Score=41.16 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=104.9
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~ 494 (954)
.+-...|.++.|+|+.+.|.+......-.||=...|+.++.+ .+.+- ...-.+.+..+|+ ++++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 344556999999999999999888888778877778777644 24442 2345677887777 6788888999998877
Q ss_pred CCCceEEE-------e---ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe---eCC-------CCce
Q 002196 495 VTGTKQYI-------F---EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAP-------GHSS 554 (954)
Q Consensus 495 ~~~~~~~~-------~---~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~-------~~~v 554 (954)
..+..+.. + .........++|.+.. +.|+.+-+-.-+.+|.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 65532211 1 1124556788888765 56777777676777765532211111 011 1246
Q ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 555 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
.++.|++....|++-+. ....+...|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS~---ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLSD---ESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEec---CCceEEEEecC-CCeeee
Confidence 77888876666665552 13346666654 443433
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.16 E-value=0.031 Score=53.16 Aligned_cols=143 Identities=9% Similarity=0.039 Sum_probs=77.3
Q ss_pred EEEEEecCCeEEEEeCCCCCceeEeeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecCCCCC
Q 002196 523 FIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRS 600 (954)
Q Consensus 523 ~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~ 600 (954)
.+...+.||.|+-++++..+....... +... ...-.-+..+++++. ++.|.+|.... +.....+.......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~----dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTS----DGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecc----cceEEEecCCccchHHHhhhcccccc
Confidence 455567788888887764332221110 0111 111123445666654 34477776552 12111111111212
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE--eCCCcEEEEEccC
Q 002196 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS--TNDNGIKILANAD 673 (954)
Q Consensus 601 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~--~~dg~i~iwd~~~ 673 (954)
...+.-..++.+..+++.||.|+.|+..-++.+.....|.. ..+.....+..++.++++ |.|..++.|++..
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccC-CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22233334556788888999999999988888777765542 234444444455566666 6677777777654
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.97 E-value=4.6 Score=40.64 Aligned_cols=190 Identities=10% Similarity=0.080 Sum_probs=114.7
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
...|.++.|+|+.+.|+++. ....-.||=...|+.+.+.++ .+ -..--.+++.-+|++.++
T Consensus 85 ~~nvS~LTynp~~rtLFav~-n~p~~iVElt~~GdlirtiPL-----------------~g-~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPL-----------------TG-FSDPETIEYIGGNQFVIV 145 (316)
T ss_pred cccccceeeCCCcceEEEec-CCCceEEEEecCCceEEEecc-----------------cc-cCChhHeEEecCCEEEEE
Confidence 44599999999999666555 455666777777887765332 22 234456788888998888
Q ss_pred EEcCCEEEEEEeeCCcceeeee----eee--cc-cCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-e--EEEecc
Q 002196 436 AYSKHIVHLYTYHGGDELRNHL----EIE--AH-VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K--QYIFEG 505 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~----~~~--~h-~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~ 505 (954)
--.++.+.++.++.+....... .+. .+ ....-.++|.|.+++ |..+-.-.-+.||.+..+. . ......
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~--l~~aKEr~P~~I~~~~~~~~~l~~~~~~~ 223 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR--LFVAKERNPIGIFEVTQSPSSLSVHASLD 223 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce--EEEEEccCCcEEEEEecCCcccccccccC
Confidence 8888999988877653222111 111 12 557889999999995 5666666666666544322 1 111111
Q ss_pred C-------CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--C-------CceEEEEECCCCCEEEE
Q 002196 506 H-------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--G-------HSSTMMAYSADGARLFS 568 (954)
Q Consensus 506 ~-------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~-------~~v~~~~~s~~g~~l~~ 568 (954)
+ -..|.++.|++..+ .+++-+.+++.+.-.|....- ...+... . .....++..++|...++
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~-~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITN-SLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cccccceEeeccccceecCCCC-cEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 1 12356667766443 788888888888877765432 2211111 1 13456777766654444
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.96 E-value=0.82 Score=52.01 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=76.5
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec-cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeC-----
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLY----- 538 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~----- 538 (954)
...-+.-+.-++ ..++.+....+.|||.+.+.....-. ...+.|.++.|...++++.+++.+..+.|.+|.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344445555555 34445555689999999887554332 3578899999999999999999999999998842
Q ss_pred CCCCc----eeE--ee-CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 539 DNLGS----RVD--YD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 539 ~~~~~----~~~--~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
.+..+ ... +. ...++|.+..|.++|..++.++. .+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 11111 111 22 23468999999999987776542 3788874
No 418
>PHA03098 kelch-like protein; Provisional
Probab=94.62 E-value=1.7 Score=50.46 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=89.6
Q ss_pred cCCCEEEEEEcCC------EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----CeEEEEECCC
Q 002196 428 PDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVT 496 (954)
Q Consensus 428 pdg~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~i~iwd~~~ 496 (954)
.++..++.||.++ .+..||..+++-.. ...+.........+. -+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 4566677776542 46777877654321 111221111222222 2444 56667765 3577888877
Q ss_pred CceEEEeccCCCC-eEEEeeeccCCccEEEEEecC------CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 497 GTKQYIFEGHESP-VYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 497 ~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
++....-.-.... -.+++.. ++...+.|+.+ ..+..||..+..-..............+...+++..+.|
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred CceeeCCCcCcCCccceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 6543211101111 1111211 22566666632 357788876543222111111111111222355566666
Q ss_pred EeCCCC----ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCce
Q 002196 570 GTNKEG----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNL 632 (954)
Q Consensus 570 ~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 632 (954)
|.+... ...+.+||..+.+....-.......-.+++. -++..++.||.+ ..+.+||..+.+-
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 543221 1248889988776543211111101112222 256666777643 4678888776543
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.57 E-value=0.12 Score=49.32 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=59.2
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEE-EEEccCCCEEEEEEcCCEEEEEEeeC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR-VMWSPDGTLFGVAYSKHIVHLYTYHG 449 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~~~dg~i~iwd~~~ 449 (954)
-+++|+.+|.|.+|....-..... ....-...|.+ +.--.++.+..+++.||.|+.|++.-
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred eEEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 468899999999999763211110 01111223333 33334667889999999999999987
Q ss_pred Ccceeeeeeeeccc-CCEEEEEEecCCCceEEEEE--cCCCeEEEEECC
Q 002196 450 GDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTC--GEDRVIKVWDAV 495 (954)
Q Consensus 450 ~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~--~~dg~i~iwd~~ 495 (954)
++.+. ....|. .++.....+..++ ++..+ |.|..++.|++.
T Consensus 134 ~k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 134 NKVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred Cceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 76554 334455 3444444444444 34444 555555555544
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.02 E-value=11 Score=44.57 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
.-.|..|.+||+|++||..|..|. .|-.+... ......+.+-...|.|-.+.-+.. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~--------------- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFT--------------- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccc--cCccccccCCCcceeEEEEEechh---hcc---------------
Confidence 457999999999999999988774 44444210 000001222222233322222211 111
Q ss_pred ceEEEeccCCCCeEEEeeeccC-CccEEEEEecCCeEEEEeCCCC
Q 002196 498 TKQYIFEGHESPVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
..+...|..+.|+|.+ ++..|+.-..|+++++||+...
T Consensus 143 ------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 ------SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ------CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123445566677654 3456777777788888877643
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.02 E-value=12 Score=41.52 Aligned_cols=125 Identities=16% Similarity=0.295 Sum_probs=75.3
Q ss_pred ecCCCCeeEEEEcCC----CCeEEEEEEcCCeEEEEeCCC-----CceeeeeeeEEEeccCCCccccccccCCCCCCeEE
Q 002196 353 LNQGSAVKSMDFHPV----QQILLVVGTNMGDVMLWEVGS-----RERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~----g~~ll~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (954)
++.-..|..+.|.|- -..|||+- ....|.||.+.. ++.+..... ++.++.+ ---..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtc---Ei~e~~p-----------vLpQG 117 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTC---EIREPFP-----------VLPQG 117 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeee---eccCCcc-----------cCCCc
Confidence 444456999999995 34466654 557899999763 222222111 1111111 11234
Q ss_pred EEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 424 l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
+.|+|....|++-.....-.++++...... ....+ .-.+.|.|.+|.+||++++++.|+ .=.-++||-.
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~sr-VkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSR-VKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCce-EEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence 789999888887766655556666543321 11133 356779999999999996555544 5677899843
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.96 E-value=8.1 Score=39.26 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=120.1
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECC------CC-ceEEEecc-----CCCCeEEEeeeccCC----------cc
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV------TG-TKQYIFEG-----HESPVYSICPHHKEN----------IQ 522 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~----------~~ 522 (954)
.-+.|+++|.+. +.++...-+...+||.. .. ..+.++.. .....+.+.|+.... ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 67888888899999986 12 22333332 123456666653321 12
Q ss_pred EEEEEecCCeEEEEeCCCCCc-----eeEeeCC-CC-ceEEEEECC--CCCEEEEEEeCCCCceEEEEEeCCCCeEEE--
Q 002196 523 FIFSTATDGKIKAWLYDNLGS-----RVDYDAP-GH-SSTMMAYSA--DGARLFSCGTNKEGESYLVEWNESEGAVKR-- 591 (954)
Q Consensus 523 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~-~~-~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~-- 591 (954)
.++.+++||+|.-|.-.-... ...+... .. -...+++.. .+.+|+.+-.. .++|.+||-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~---~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR---QGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC---CCceEEecCccccccCCC
Confidence 478899999999997432222 1222211 22 233455543 35667666432 4458888743222110
Q ss_pred EEecC---CCCCeEEE------------EEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC----
Q 002196 592 TYHGL---GKRSVGVV------------QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---- 652 (954)
Q Consensus 592 ~~~~~---~~~~i~~~------------~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 652 (954)
.+... .+.....+ .-.++...=+.|..-|.|-+||. .|..++.+...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01100 00000011 11122222223334578999997 567888776555555667788766
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 653 --EGILLAVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 653 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
.|.+|+----||+|..+|..++ +.+-.+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4677877777999999999988 44444544
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.88 E-value=11 Score=40.39 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=42.1
Q ss_pred CCCCccEEEecc-------CCCeEEEec-CCeEEEEEcccccEEE---e-eCCCCCCeeEEEecCCCCceEEEEecCccE
Q 002196 842 PEDAVPCFALSK-------NDSYVMSAS-GGKISLFNMMTFKTMT---T-FMPPPPAATFLAFHPQDNNIIAIGMEDSSI 909 (954)
Q Consensus 842 ~~~~v~~~~~s~-------dg~~la~~s-dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~sp~d~~~lasgs~dg~i 909 (954)
+...+..+.|-. .|.++++.- .+.|....++....+. . +......+..+++.| ||.++++-+.+|.|
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKI 329 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeE
Confidence 345666777753 344565555 6788888876443222 2 333445799999999 89988887778877
Q ss_pred E
Q 002196 910 Q 910 (954)
Q Consensus 910 ~ 910 (954)
+
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 4
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.57 E-value=1.1 Score=50.94 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=75.8
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc--cCCCEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS--PDGTLFG 434 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~l~ 434 (954)
....-+.-|.-++ +.++-+....+.|||...+....+.. + ...+.|.++.|. |||+.++
T Consensus 30 ~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~-----------------f-~~~~~I~dLDWtst~d~qsiL 90 (631)
T PF12234_consen 30 SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEES-----------------F-SEDDPIRDLDWTSTPDGQSIL 90 (631)
T ss_pred CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeee-----------------e-cCCCceeeceeeecCCCCEEE
Confidence 4555566666666 55555555679999998887554322 1 356899999996 4899999
Q ss_pred EEEcCCEEEEEEee-----C----Ccceeeeeeeeccc-CCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 435 VAYSKHIVHLYTYH-----G----GDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 435 s~~~dg~i~iwd~~-----~----~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.|..+.|.+|.-. . ...++.. .+..|+ .+|.+..|.++|. ++.|+ ++.+.|+|
T Consensus 91 aVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~---LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGT---LVVGS-GNQLFVFD 154 (631)
T ss_pred EEEcCcEEEEEEccchhhhcCCcccceeEEE-EeecCCCCCccceeEecCCe---EEEEe-CCEEEEEC
Confidence 99999999998531 1 1122222 244555 6899999999997 44443 35788887
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=93.54 E-value=3.9 Score=46.36 Aligned_cols=186 Identities=9% Similarity=-0.049 Sum_probs=85.4
Q ss_pred EEEEEcCC-----CeEEEEECCCCceEEEeccCCCCe-EEEeeeccCCccEEEEEecC--CeEEEEeCCCCCceeEeeCC
Q 002196 479 SVVTCGED-----RVIKVWDAVTGTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAP 550 (954)
Q Consensus 479 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~ 550 (954)
+++.||.+ ..+..||..+++....-.-..... .+++. . ++...+.|+.+ ..+..||..+..-.......
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E--CCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 44555543 256678877665433211111111 11221 1 22566667654 34677776543221111111
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
..........-+|+..+.||.++. ...+..||+.+.+....-.-... .....+..-++...+.|+ .+.+||..++
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEECC---ceEEecCCCC
Confidence 111111112236666666665432 34577899887765432111111 111112223455555553 4678888776
Q ss_pred ceeEEEecCCCCCCcceEEECCCCCEEEEEeCC-----CcEEEEEccCC
Q 002196 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iwd~~~~ 674 (954)
+-...-...........+. -++++.+.||.+ ..+..||+.++
T Consensus 426 ~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 5443322221111222222 267788888754 35677777654
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.46 E-value=1.9 Score=46.98 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=57.1
Q ss_pred CCccEEEeccCCCeEEEecCCeEE-EEEccc-----cc--EE-EeeCC----CCCCeeEEEecCCCCceEEEEecC----
Q 002196 844 DAVPCFALSKNDSYVMSASGGKIS-LFNMMT-----FK--TM-TTFMP----PPPAATFLAFHPQDNNIIAIGMED---- 906 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~sdg~i~-iwd~~~-----~~--~~-~~~~~----h~~~v~~l~~sp~d~~~lasgs~d---- 906 (954)
.....+++.++| +++ ++...|. +.|... ++ .+ ..+.. +......++|.| ||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence 345788999998 444 4434454 435431 11 12 12322 123478899999 88766654421
Q ss_pred ---------------ccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecC
Q 002196 907 ---------------SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA 947 (954)
Q Consensus 907 ---------------g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~ 947 (954)
|.|.-++.++++....-.++ .....++|+++|+++++-..
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence 34555566555533223344 33568999999988776443
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.15 E-value=0.2 Score=57.09 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=80.0
Q ss_pred ccccccccccccCCCceeEEecCCCCCccceEEEEEe---cCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCcccc
Q 002196 749 EKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT---NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (954)
Q Consensus 749 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~ 825 (954)
|.+.+|+++-....-++.....+.......+.-+.|. ++..++..+-.++.+++-.+++..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--------------- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--------------- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------------
Confidence 6778888875333323322222222233344445444 4666777777788998876554221
Q ss_pred CCCCcccccccCCCCCCCCCccEE-----------EeccCCCeEEEec-CCeEEEEEcc-----cccEEEeeCCCCCC-e
Q 002196 826 QPPSGILMTNDISDTNPEDAVPCF-----------ALSKNDSYVMSAS-GGKISLFNMM-----TFKTMTTFMPPPPA-A 887 (954)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~v~~~-----------~~s~dg~~la~~s-dg~i~iwd~~-----~~~~~~~~~~h~~~-v 887 (954)
.+ +.+ |...++.+ .+||||+.+|.+. ||.++.|.+. ...|....+.|++. -
T Consensus 218 -----~l----~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 218 -----SL----FRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred -----HH----HHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 11 111 33333322 2799999999998 9987777653 34455566667643 2
Q ss_pred eEEEecCCC--------CceEEEEec-CccEEEEeccccceE
Q 002196 888 TFLAFHPQD--------NNIIAIGME-DSSIQIYNVRVDEVK 920 (954)
Q Consensus 888 ~~l~~sp~d--------~~~lasgs~-dg~i~iwd~~~~~~~ 920 (954)
.|.-|..+. -.+++++++ ...+++|.-...+|+
T Consensus 287 vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 287 VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 222232200 123444443 457889988777776
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.04 E-value=8.4 Score=45.49 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=29.7
Q ss_pred CCcceEEECCC---CCEEEEEeCCCcEEEEEccCCCeeEEEec
Q 002196 643 QASPCIRFNKE---GILLAVSTNDNGIKILANADGIRLLRTVE 682 (954)
Q Consensus 643 ~~v~~v~~s~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 682 (954)
..|..+.|+|. +..|++-+.|+++|+||+.....+.+.+.
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 35677888885 47888888899999999877655555544
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.00 E-value=0.05 Score=61.55 Aligned_cols=118 Identities=11% Similarity=0.172 Sum_probs=64.2
Q ss_pred EecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-
Q 002196 784 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS- 862 (954)
Q Consensus 784 ~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s- 862 (954)
.||||+.++..+.||.++.|.+.-. |.. .-.....|...++......+ . |...+..+..+. -.++++++
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~-----g~~-~~rclhewkphd~~p~vC~l-c--~~~~~~~v~i~~-w~~~Itttd 312 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYIT-----GKI-VHRCLHEWKPHDKHPRVCWL-C--HKQEILVVSIGK-WVLRITTTD 312 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeee-----ccc-cHhhhhccCCCCCCCceeee-e--ccccccCCccce-eEEEEeccc
Confidence 7999999999999999999965321 110 01123456666644333323 2 232222222211 13455665
Q ss_pred -CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCc------------eEEEEecCccEEEEecc
Q 002196 863 -GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN------------IIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 863 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~------------~lasgs~dg~i~iwd~~ 915 (954)
+..+++|....++|.. +.--+.|..+. |.|+. .+++-+-|++|.+|-=.
T Consensus 313 ~nre~k~w~~a~w~Cll--~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCLL--DKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred CCcceeEeeccchhhhh--hhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 4669999988888762 21222333333 21332 23345567888888533
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.92 E-value=12 Score=38.09 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=60.3
Q ss_pred CCeEEEEEcccccEEEeeC--CCCCCeeEEEecCC-----CCceEEEEecCccEEEEeccccceEEEecCCc------cc
Q 002196 863 GGKISLFNMMTFKTMTTFM--PPPPAATFLAFHPQ-----DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ------KR 929 (954)
Q Consensus 863 dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~-----d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~------~~ 929 (954)
-|.|-+||. .|..++.+. +.-...+.|+..|. .+.+|+---.||+|..+|..+|+.+..+.... ..
T Consensus 221 ~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 221 LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 478999998 478888774 23345677777652 46788777789999999999999888776543 35
Q ss_pred eeEEEEecC------CCeEEEecCC
Q 002196 930 ITGLAFSNT------LNVLVSSGAD 948 (954)
Q Consensus 930 V~~l~~s~d------g~~l~s~s~D 948 (954)
.+.|+|-.. ..+.++++-+
T Consensus 300 LWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 300 LWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred eEEeeeCCCcCCCCcceEEEEeCCC
Confidence 788888652 2445555544
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.80 E-value=0.31 Score=32.97 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=27.6
Q ss_pred CCeeEEEecCCCC--ceEEEEecCccEEEEecccc
Q 002196 885 PAATFLAFHPQDN--NIIAIGMEDSSIQIYNVRVD 917 (954)
Q Consensus 885 ~~v~~l~~sp~d~--~~lasgs~dg~i~iwd~~~~ 917 (954)
+.|++|.|||..+ .+||.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998555 69998888899999999853
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=1.9 Score=50.99 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCccEEEeccCCC--eEEEecCCeEEEEEcccccE-EEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceE
Q 002196 844 DAVPCFALSKNDS--YVMSASGGKISLFNMMTFKT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (954)
Q Consensus 844 ~~v~~~~~s~dg~--~la~~sdg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~ 920 (954)
....++.|.|.=. .+++-.|+.|++..+.-... +..+. -...+++++|+| .|..+++|...|++.-|... ++..
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik 232 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIK 232 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-ccee
Confidence 3445667776532 33333488888887753222 22222 455689999999 99999999999999988854 5544
Q ss_pred EEecC----CccceeEEEEecCCCeEEEe
Q 002196 921 TKLKG----HQKRITGLAFSNTLNVLVSS 945 (954)
Q Consensus 921 ~~~~~----h~~~V~~l~~s~dg~~l~s~ 945 (954)
..+.+ ....|.+|+|-..-.+||.=
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 44432 24679999998877777643
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=1.1 Score=52.85 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=90.1
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE-----EEecc------CCCCeEEEeeeccCCccEEEEEecCCeE
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-----YIFEG------HESPVYSICPHHKENIQFIFSTATDGKI 533 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~------~~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (954)
.+..+...+|+....++..+.+-.|..||+++-..- .-|.. ......++.|+|... ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677777877545566666668999998753211 11111 122345566776654 346677788988
Q ss_pred EEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC---CCCCeEEEEEeCCC
Q 002196 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL---GKRSVGVVQFDTTK 610 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~ 610 (954)
++..+................++++|+|.|+.++++-.++ ++.-|-.. ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnG----t~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNG----TEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCC----eEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 8886654333333223345789999999999999986433 46666543 3433444332 23468889988777
Q ss_pred CEEEEEE
Q 002196 611 NRFLAAG 617 (954)
Q Consensus 611 ~~l~~~~ 617 (954)
.++++-+
T Consensus 256 eflvvy~ 262 (1405)
T KOG3630|consen 256 EFLVVYG 262 (1405)
T ss_pred eEEEEec
Confidence 7776643
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.61 E-value=18 Score=39.44 Aligned_cols=198 Identities=15% Similarity=0.059 Sum_probs=106.8
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC-CCe
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPV 510 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v 510 (954)
.+..+..+|.|.-.|.+++..+....... ....+..-.+..+|+ ++.++.++.++.+|..+|+.+....... ..+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 33444677777777777776433211111 112223333333776 8888999999999988999888877555 111
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC---CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
..-.+. .+ ..++.++.++.+...|..++.......... ..+..-....++ .++.+..+ . +..+.-.|..+|
T Consensus 146 ~~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 111111 11 244555577888888877777665544322 111111112222 33333321 1 234777788888
Q ss_pred eEEEEEecCCCCC---eEEEEEeC-----CCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 588 AVKRTYHGLGKRS---VGVVQFDT-----TKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 588 ~~~~~~~~~~~~~---i~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
............. +....... .+..++.++.++.+...|..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7766543221101 10000000 1223456677888999999999999888753
No 435
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.57 E-value=7.7 Score=41.38 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred ccceEEEEEecCCceEEEeecCCe------EEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEE
Q 002196 776 AMRVSRLIYTNSGLAILALASNAV------HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 849 (954)
Q Consensus 776 ~~~v~~~~~spdg~~l~~~~~dg~------v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~ 849 (954)
-+....+.+.+++..+++.+++|. +..+++..... ..+.......+.+-+.. |..+. . ......++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Egi 90 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEGI 90 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhHe
Confidence 466788999976667777788777 55554443111 01111111111222221 22211 1 22356688
Q ss_pred EeccCCCeEEEec-C------CeEEEEEcccccEEEeeCC---------------CCCCeeEEEecCCCCceEEEEec--
Q 002196 850 ALSKNDSYVMSAS-G------GKISLFNMMTFKTMTTFMP---------------PPPAATFLAFHPQDNNIIAIGME-- 905 (954)
Q Consensus 850 ~~s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~---------------h~~~v~~l~~sp~d~~~lasgs~-- 905 (954)
++.++|.++++.. + ..|+-++.. |+....+.. .+...-+|+++| ||+.|.++.+
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8888888888776 6 678888876 666555421 233478899999 8886655542
Q ss_pred ---Cc--c-------EEEE--eccc-cce----EEEecC-----CccceeEEEEecCCCeEEE
Q 002196 906 ---DS--S-------IQIY--NVRV-DEV----KTKLKG-----HQKRITGLAFSNTLNVLVS 944 (954)
Q Consensus 906 ---dg--~-------i~iw--d~~~-~~~----~~~~~~-----h~~~V~~l~~s~dg~~l~s 944 (954)
|+ . ++|+ |..+ ++. ...+.. ....|+.+.+-+|+++|+-
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 1 4554 4444 322 223332 4567899999999987763
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=92.29 E-value=5.3 Score=45.31 Aligned_cols=187 Identities=9% Similarity=-0.071 Sum_probs=80.2
Q ss_pred CCCEEEEEEcCC-----EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC--CeEEEEECCCCceEE
Q 002196 429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQY 501 (954)
Q Consensus 429 dg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~ 501 (954)
++..+++||.++ .+..||..++.-.. ...+....... +++ .-++. +.+.||.+ .++..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 345556666542 46677777654221 11222111112 222 23455 56666653 468888877654332
Q ss_pred EeccCCCCeEEEeeeccCCccEEEEEecCC---eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 502 IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 502 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
. ..-..+....+... -+|...+.|+.++ .+..||.++..-..............+..-+|+..+.|+ .
T Consensus 346 ~-~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG-------~ 416 (480)
T PHA02790 346 M-PSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR-------N 416 (480)
T ss_pred C-CCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC-------c
Confidence 1 11111111111111 1225667776553 366777665332211111111111111223454444443 1
Q ss_pred EEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCC
Q 002196 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNV 630 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 630 (954)
..+||+.+.+....-.-.....-.+++. -+++..+.||.+ ..+..||..++
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 5678888765543221111101112222 356677777643 23555555443
No 437
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.97 E-value=4.8 Score=44.51 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=88.0
Q ss_pred CCCeEEEEEccCCCEEEEEE--cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCc--eEEEEEcCCCeEEEEE
Q 002196 418 TASVNRVMWSPDGTLFGVAY--SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ--LSVVTCGEDRVIKVWD 493 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--~~l~s~~~dg~i~iwd 493 (954)
-.+|..++|....+.+++.- .+|.+++=|- ..-|.-..|..+.|.|-+.. ..+++.-....|.+|.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc----------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 35788999974333334331 1222221110 12234455899999986320 1366667778999998
Q ss_pred CC-----CCceEEEeccC---CCC--eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC-CCCceEEEEECCC
Q 002196 494 AV-----TGTKQYIFEGH---ESP--VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSAD 562 (954)
Q Consensus 494 ~~-----~~~~~~~~~~~---~~~--v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~ 562 (954)
+. +++.+..-..+ .-+ -..+.|+|.. ..|+.-.....-.+++++.......... ..+-|.|.+|.+|
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 75 22332221111 112 2456788876 4555544444434566665555544433 3447999999999
Q ss_pred CCEEEEEEeCCCCceEEEEEeCCC
Q 002196 563 GARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
|++|+++-.+ .-.-++||-..
T Consensus 167 G~RLVVAvGS---sLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGS---SLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCC---eEEEEEecCch
Confidence 9999887632 44578898543
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=19 Score=41.32 Aligned_cols=165 Identities=12% Similarity=0.103 Sum_probs=78.0
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeee-eeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
..+..+.||.+..+|+ ...+|+++||++.... +... .........|..+.|..+| ++.-..+|.+.+-+-...
T Consensus 84 ~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~G----Vavlt~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 84 GELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNG----VAVLTVSGQVILINGVEE 157 (829)
T ss_pred CCeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCc----eEEEecCCcEEEEcCCCc
Confidence 3888999998776555 5699999999986432 2210 0112333456666666655 333333444444332222
Q ss_pred ceEEEecc-CCCCeEEEeeeccCC---ccEEEEEe-cCCeEEEEeCCCC-CceeEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 498 TKQYIFEG-HESPVYSICPHHKEN---IQFIFSTA-TDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 498 ~~~~~~~~-~~~~v~~~~~~~~~~---~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
..++.+.. ........||.-..+ ...++-.. ..+ ..++-.... .....+......+..+..||+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 12222221 111111122221111 01111111 000 011111111 111222223356788999999999988765
Q ss_pred CCCCceEEEEEeCCCCeEEEEEe
Q 002196 572 NKEGESYLVEWNESEGAVKRTYH 594 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~ 594 (954)
.| .+.+-+....+....+.
T Consensus 237 ~G----~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 TG----KIWVVSIDLSQILCEFN 255 (829)
T ss_pred CC----cEEEEecchhhhhhccC
Confidence 43 36666666555555554
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.80 E-value=0.031 Score=58.95 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=99.9
Q ss_pred cceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCC
Q 002196 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (954)
Q Consensus 777 ~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 856 (954)
.......|.|.+.-++.++.+..+..||=. ....... ........++|..+|.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a----------------------gq~~le~-----n~tg~aldm~wDkegd 87 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA----------------------GQVILEL-----NPTGKALDMAWDKEGD 87 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhh----------------------cceeccc-----CCchhHhhhhhccccc
Confidence 344456778888778888888777777521 1111111 1344566778888887
Q ss_pred eEEEec--CCeEEEEEcccccEEEeeC-CCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEE
Q 002196 857 YVMSAS--GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933 (954)
Q Consensus 857 ~la~~s--dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l 933 (954)
.++... .+.+++||+.+... .++. +....-.-+.|++ +...++.|-..|.+.|++-.+.+.+...-.|..+++++
T Consensus 88 vlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~ 165 (615)
T KOG2247|consen 88 VLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQI 165 (615)
T ss_pred hhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEE
Confidence 776554 68899999875322 2222 1111122378999 88999999999999999998887777666699999999
Q ss_pred EEecCCCeEEEecCCcce
Q 002196 934 AFSNTLNVLVSSGADSQV 951 (954)
Q Consensus 934 ~~s~dg~~l~s~s~Dg~I 951 (954)
+|.+.+ +.+.++.|..+
T Consensus 166 av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 166 AVTLED-YVILCDCDNTL 182 (615)
T ss_pred Eecccc-eeeecCcHHHH
Confidence 999987 45666666544
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.70 E-value=0.61 Score=31.61 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCeeEEEEcCCCC--eEEEEEEcCCeEEEEeCCC
Q 002196 357 SAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGS 388 (954)
Q Consensus 357 ~~V~~~~~sp~g~--~ll~~g~~dg~i~iwd~~~ 388 (954)
+.|.+|.|||... .||+..-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999997544 5888888889999999985
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=13 Score=35.37 Aligned_cols=173 Identities=16% Similarity=0.108 Sum_probs=92.8
Q ss_pred EEEEEcCC--CeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEE
Q 002196 479 SVVTCGED--RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (954)
Q Consensus 479 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 556 (954)
++.+.+.- ..|++||+.+|+.+..-.-....+..=-...-++ .+-.-.-.+|.-..+|.++.+..-.+.-.+. -..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 56666654 4799999999988765543222222211111222 2233334577778888888776655544332 222
Q ss_pred EEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE----ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce
Q 002196 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY----HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (954)
+ ..|++.|+.+ +|..+++.-|+++.....++ .+..-..++.+.|- +|...+-.=.+..|...|..+|+.
T Consensus 136 L--t~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 L--TSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred e--ecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 3 3355555554 33556888887765443332 22211122333443 344444333445566667777777
Q ss_pred eEEEecC----------CCCCCcceEEECCCC-CEEEEE
Q 002196 633 LASIDAD----------GGLQASPCIRFNKEG-ILLAVS 660 (954)
Q Consensus 633 ~~~~~~~----------~~~~~v~~v~~s~~~-~~l~s~ 660 (954)
+..+... .+....+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6665432 123356789999877 455554
No 442
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.08 E-value=27 Score=38.21 Aligned_cols=40 Identities=5% Similarity=-0.048 Sum_probs=18.9
Q ss_pred EEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
+.+||..+.+....-..+. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 4578877654332211111 111222333356777777753
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.59 E-value=27 Score=37.30 Aligned_cols=109 Identities=7% Similarity=-0.033 Sum_probs=50.8
Q ss_pred EEEEEcCC-----CeEEEEECCCCceE---EEeccCCCCe--EEEeeeccCCccEEEEEec-----CCeEEEEeCCCCCc
Q 002196 479 SVVTCGED-----RVIKVWDAVTGTKQ---YIFEGHESPV--YSICPHHKENIQFIFSTAT-----DGKIKAWLYDNLGS 543 (954)
Q Consensus 479 ~l~s~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~ 543 (954)
+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++.. ++.+.+.|+. ...+..||..+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 46666654 35777787766531 2222111111 112221 2256666664 23577788775442
Q ss_pred eeEeeCCC-CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 544 RVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 544 ~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
...-.... ......+...+++..+.++.++.....+.+||+.+.+..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 22111111 111222223356666666654322223678898876543
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=22 Score=40.79 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=93.0
Q ss_pred CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe----ccCCCCeEEEe
Q 002196 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF----EGHESPVYSIC 514 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~ 514 (954)
--.|+|+++.+ ..+. .+.-..+.+..+.|+.+.. |++...||++++|++-. ..+... ......|..+.
T Consensus 63 ~~~I~If~~sG-~lL~---~~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 63 RPYIRIFNISG-QLLG---RILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred ceeEEEEeccc-cchH---HHHhcCCCeeeecccCCce---EEEEeccceEEEeecch-hhhcccccccccccCceeEEE
Confidence 34588888764 3333 2222334788999998776 88899999999999643 322221 12233344444
Q ss_pred eeccCCccEEEEEecCCeEEEE-eCCCCCceeEeeCCCCce--EEEEECCCCC---EEEEEEeCCCCceEEEEEeCCCCe
Q 002196 515 PHHKENIQFIFSTATDGKIKAW-LYDNLGSRVDYDAPGHSS--TMMAYSADGA---RLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~v--~~~~~s~~g~---~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
+.. +| ++.-..+|.+.+- +............+.... .|-+..+++. .++-... .....++-..+..
T Consensus 135 ~f~--~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~----~v~~~~~q~~~~~ 206 (829)
T KOG2280|consen 135 FFH--NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV----AVGLHICQVEESR 206 (829)
T ss_pred Eec--Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech----hhhhcccceeccc
Confidence 433 22 4444445555433 222211111111112211 2222222221 1111100 0001111111111
Q ss_pred -EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 589 -VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 589 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
....+..... .+..+..||+.++|+--...|.|.+-+....+.+..+..
T Consensus 207 ~q~~~~~~~~~-~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 207 VQLHALSWPNS-SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ccccccCCCCc-eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1112222222 677789999999999999999999998887777766654
No 445
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.10 E-value=26 Score=36.49 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=100.6
Q ss_pred CCCCeEEEEEccCCCEEEEEEcCCEEEEEEee-CCcceeeeeeeecc---cCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-GGDELRNHLEIEAH---VGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
-...+..|.|..+..-+++| ..+. |+... .|+.-... ..... .....++.|..+ . .+++| ..+.| +.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~-~~~~~~~~~~~l~~I~f~~~-~--g~ivG-~~g~l-l~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPV-SLDLDNPFDYHLNSISFDGN-E--GWIVG-EPGLL-LH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE------S-----EEEEEEEETT-E--EEEEE-ETTEE-EE
T ss_pred CCCceEEEEEecCCEEEEEe-cCCE--EEEECCCCcccccc-ccCCCccceeeEEEEEecCC-c--eEEEc-CCceE-EE
Confidence 34589999999655556655 5563 44443 33332211 11111 123667777643 2 34444 44543 33
Q ss_pred ECCCCceEEEec---cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee--EeeCCCCceEEEEECCCCCEEE
Q 002196 493 DAVTGTKQYIFE---GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 493 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
-.+.|+.-..+. .-.+....+...... .....+..|.| |......... ........+..+..++||++++
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~va 160 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVA 160 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEE
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEE
Confidence 334443222221 112223333332222 33334444554 3333333322 2233345788888999999888
Q ss_pred EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEE-CCCCceeEE--EecCCCCCC
Q 002196 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVNLLAS--IDADGGLQA 644 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~--~~~~~~~~~ 644 (954)
++.. -....-||.-...-...-.. ....+..+.|.|++...+.+ ..|.|++=+ ....+.... .......-.
T Consensus 161 vs~~----G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~ 234 (302)
T PF14870_consen 161 VSSR----GNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYG 234 (302)
T ss_dssp EETT----SSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-
T ss_pred EECc----ccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCcee
Confidence 8753 22355677543222222222 23389999999998766644 788888877 222222222 111111224
Q ss_pred cceEEECCCCCEEEEEeCC
Q 002196 645 SPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~d 663 (954)
+..++|.+++...++|+..
T Consensus 235 ~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 235 ILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEEEESSSS-EEEEESTT
T ss_pred eEEEEecCCCCEEEEeCCc
Confidence 6789999998888876543
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.93 E-value=18 Score=39.19 Aligned_cols=153 Identities=10% Similarity=0.104 Sum_probs=91.8
Q ss_pred EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccC------CccEEEEEecCCeEEEEeCC
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------NIQFIFSTATDGKIKAWLYD 539 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~s~dg~i~iwd~~ 539 (954)
+..+-.+.+...+++..|+....++-.|+..|+.+..+..|...| +.+.|.. +.+.|+ |-.+..|.-.|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccc
Confidence 333444445555566678888889999999999999998877653 3444432 113344 4445555555655
Q ss_pred CCCceeEeeCCCC-----ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEE
Q 002196 540 NLGSRVDYDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 540 ~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 614 (954)
..+.......... ...+..-. ...++++++..|+ |++||--.-+....+++... .|..+..+.+|.+++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGD----irLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGD----IRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhccccccccccccc-cCceEEEecCCCc----eeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 4443222211111 22233222 3447888876555 99999544344444555444 788899999999998
Q ss_pred EEECCCeEEEEECC
Q 002196 615 AAGDEFMIKFWDMD 628 (954)
Q Consensus 615 ~~~~dg~i~iwd~~ 628 (954)
+.+.. .+.+-|+.
T Consensus 620 aTCk~-yllL~d~~ 632 (776)
T COG5167 620 ATCKN-YLLLTDVP 632 (776)
T ss_pred Eeecc-eEEEEecc
Confidence 88753 56666653
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=15 Score=35.03 Aligned_cols=175 Identities=12% Similarity=0.095 Sum_probs=93.7
Q ss_pred CCCEEEEEEc--CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC
Q 002196 429 DGTLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (954)
Q Consensus 429 dg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 506 (954)
+|.++.+.+. ...|++||+.+|+.+.... +. ...+..=-...-+.. +..-.-.+|....+|.++-+++..+. .
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~-l~--~~~~FgEGit~~gd~-~y~LTw~egvaf~~d~~t~~~lg~~~-y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK-LA--PDTVFGEGITKLGDY-FYQLTWKEGVAFKYDADTLEELGRFS-Y 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee-cC--Cccccccceeeccce-EEEEEeccceeEEEChHHhhhhcccc-c
Confidence 4555665544 3469999999988665331 22 111211111222443 34445677888999999888877765 3
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE--eeCCCC---ceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGH---SSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~---~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.+.=+.++. ++..++.++...+++.-|.++...... ....+. ..+.+.|- +|...+-.-.+ ..|..
T Consensus 130 ~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t----~~I~r 200 (262)
T COG3823 130 EGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT----TRIAR 200 (262)
T ss_pred CCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee----cceEE
Confidence 444455542 224466666666676666555433222 122222 22333333 44443333221 12666
Q ss_pred EeCCCCeEEEEEec-----------CCCCCeEEEEEeCCCCEEEEEE
Q 002196 582 WNESEGAVKRTYHG-----------LGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 582 wd~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
.|+.+|+.+..+.. .+....+.+++.|++..++..+
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 67777776655432 1223567788888875554444
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.63 E-value=23 Score=41.28 Aligned_cols=164 Identities=8% Similarity=0.085 Sum_probs=93.1
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeee-eeEEEeccCCCcccccccc--CCCCCCeEEEEEcc--CCCEEEEEEcCCEEEEE
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVK-SFKVWELGACSMPLQASLS--SDYTASVNRVMWSP--DGTLFGVAYSKHIVHLY 445 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp--dg~~l~s~~~dg~i~iw 445 (954)
+++++. .+.|.||+...-...... ...-.+............. ..-...|+.|.... +...|+.+..||.|.+|
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y 129 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY 129 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence 555654 688999998764442210 0000001000000000000 00234566666555 56688999999999999
Q ss_pred EeeC-------C----c------ceeeeeeeecccCCEEEEEEe--cCCCceEEEEEcCCCeEEEEECCC--CceEE-Ee
Q 002196 446 TYHG-------G----D------ELRNHLEIEAHVGSVNDLAFS--YPNKQLSVVTCGEDRVIKVWDAVT--GTKQY-IF 503 (954)
Q Consensus 446 d~~~-------~----~------~~~~~~~~~~h~~~v~~~~~s--~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~-~~ 503 (954)
.+++ . + .+++...+. -...++.++++ ...+ +||+++....|.||-... .+... .-
T Consensus 130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--lIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--LIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--EEEEecCCceEEEEEEeccccccccccc
Confidence 7632 0 0 011111222 34578999998 5555 788888888888875433 22111 11
Q ss_pred ccCCCCeEEEeeeccCC---cc-EEEEEecCCeEEEEeC
Q 002196 504 EGHESPVYSICPHHKEN---IQ-FIFSTATDGKIKAWLY 538 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~---~~-~l~s~s~dg~i~iwd~ 538 (954)
..|...|.+++|.++.. |. .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 12566788888877652 22 7888999999998887
No 449
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.61 E-value=29 Score=36.17 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=88.2
Q ss_pred eEEEEECCCCceEEEecc------CCCCeEEEeeeccCC----ccEEEEEecCCeEEEEeCCCCCceeEeeCC-------
Q 002196 488 VIKVWDAVTGTKQYIFEG------HESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNLGSRVDYDAP------- 550 (954)
Q Consensus 488 ~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------- 550 (954)
.|.+||+.+++.++++.- ..+.+..+.+..... +...++-+..+.|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 567788888887776542 234567777765332 223334444567899999876554432111
Q ss_pred ------------CCceEEEEECC---CCCEEEEEEeCCCCceEEEEEeCCC-----C---------eEEEEEecCCCCCe
Q 002196 551 ------------GHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESE-----G---------AVKRTYHGLGKRSV 601 (954)
Q Consensus 551 ------------~~~v~~~~~s~---~g~~l~~~~~~~~~~~~i~iwd~~~-----~---------~~~~~~~~~~~~~i 601 (954)
...+..++.+| +|+.|+.....+. .+|.+.+ . ..+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-----~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-----KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-----EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-----cEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11355666655 6667776654321 2232221 1 011222 1111245
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCc---eeEEEecCCC-CCCcceEEECC--CCCEEEE
Q 002196 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---LLASIDADGG-LQASPCIRFNK--EGILLAV 659 (954)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~v~~s~--~~~~l~s 659 (954)
..++++++|..+++--..+.|..|+..+.- ....+..... ...+..+.+.+ +|.+.+.
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 668899988888888899999999987621 2222222211 33556777777 5544443
No 450
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.20 E-value=41 Score=37.43 Aligned_cols=277 Identities=17% Similarity=0.105 Sum_probs=134.1
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
+....+|..+.+.-.|. +-.|+.|| +..||..+++.+.... .....+|..+.-+-.|+
T Consensus 161 ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~- 218 (671)
T COG3292 161 LLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR- 218 (671)
T ss_pred cccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-
Confidence 34567899999999997 45677776 6778887777664210 11124566655555554
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE-EeccCC--CC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHE--SP 509 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~--~~ 509 (954)
|.+|+.+| |.+.+.++.+.... -..-..+.|..+.=..+|. +-.|+..|-.+. ......... ..+.|. +.
T Consensus 219 LWVGTdqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~ 291 (671)
T COG3292 219 LWVGTDQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVST 291 (671)
T ss_pred EEEEeccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccc
Confidence 55576666 66766655221110 0011223344433333443 455555444322 222222221 122222 23
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECC--CCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
|.++.. +.+| -+.+++.+|.+++-+-+-..........+..+..++.+| .+..+..... .+.+.+-+..+|
T Consensus 292 vnsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG 364 (671)
T COG3292 292 VNSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTG 364 (671)
T ss_pred ccceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCC
Confidence 444433 3332 467777777665543221111111111122222222222 1111111110 112445555667
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
..++.........|+.+++..+ ..+-.|+...-+..|+.++ +.......+. ..+.|..+.-.|+++ |..|+.+|.+
T Consensus 365 ~~v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 365 ELVRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred cEEEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeE
Confidence 6666554444446666777664 4455566553455666655 3333333222 245677788888887 6678888766
Q ss_pred EE
Q 002196 667 KI 668 (954)
Q Consensus 667 ~i 668 (954)
+.
T Consensus 442 k~ 443 (671)
T COG3292 442 KR 443 (671)
T ss_pred ec
Confidence 54
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=4.7 Score=48.92 Aligned_cols=170 Identities=14% Similarity=0.195 Sum_probs=100.5
Q ss_pred CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 346 ~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
|.+++..++|...=..|-+-|.=.+.=+ +.|+.+.+|+.+++..... +.+-+..|..+.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 4555566666666666666665332222 4688999999998654432 344455555554
Q ss_pred --------EccCCCEEEEEEcCCEEEEEEeeCCcceeee------eeeecccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 426 --------WSPDGTLFGVAYSKHIVHLYTYHGGDELRNH------LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 426 --------~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
|-|.=++++....--.|.++-+.-.+..... ..+....-.|.|+....+|+ ++-+|.||.|+-
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg~lyE 203 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDGNLYE 203 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCCCEEE
Confidence 3334445555555556777765432211111 12223355789999888887 566666674432
Q ss_pred E--ECCCC---c-e----------------EEEec-cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC
Q 002196 492 W--DAVTG---T-K----------------QYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 492 w--d~~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
. ....| + + +-.+. .+..+|..+.+..+. ..+.+-+..|+|.+||+...
T Consensus 204 l~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 204 LVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred EEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 1 11111 1 1 01223 567789999887655 68999999999999999763
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.82 E-value=7.5 Score=41.38 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred eeeCCCCCcceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCc
Q 002196 328 VAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM 407 (954)
Q Consensus 328 ~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 407 (954)
++.-.+|..-+..+..+..-..-.-+...++|.++.||+|.+ ++|+--.+.+|.+++....+.......+
T Consensus 38 favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~--------- 107 (657)
T KOG2377|consen 38 FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE--------- 107 (657)
T ss_pred EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------
Q ss_pred cccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC
Q 002196 408 PLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (954)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg 487 (954)
.+..+..|....|+.+ .-+|.....| +.+|.+...+ +.....+.|...|....|.++..-.+++++-..+
T Consensus 108 ------ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n 177 (657)
T KOG2377|consen 108 ------CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN 177 (657)
T ss_pred ------hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeecccccc
Q ss_pred eEEEEECCCCceEE
Q 002196 488 VIKVWDAVTGTKQY 501 (954)
Q Consensus 488 ~i~iwd~~~~~~~~ 501 (954)
++.=+-++++...+
T Consensus 178 ~lnpf~~~~~~v~k 191 (657)
T KOG2377|consen 178 VLNPFHFRAGTMSK 191 (657)
T ss_pred ccccEEEeeceeee
No 453
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.73 E-value=11 Score=40.92 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=51.2
Q ss_pred CCeeEEEEcCCCCeEEEEEE-----------cCC-eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGT-----------NMG-DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
.....|+|.++|+ ++++-. ..+ .|.+++-.++.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 3566888999988 544432 223 677776543321110 000122223456789
Q ss_pred EEccCCCEEEEEEcCCEEEEEEeeCCc----ceeee-eeeec----ccCCEEEEEEecCCC
Q 002196 425 MWSPDGTLFGVAYSKHIVHLYTYHGGD----ELRNH-LEIEA----HVGSVNDLAFSYPNK 476 (954)
Q Consensus 425 ~~spdg~~l~s~~~dg~i~iwd~~~~~----~~~~~-~~~~~----h~~~v~~~~~s~~~~ 476 (954)
++.++| +++ +......++.+.+... ....+ ..+.. +......++|.|||.
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 999999 444 4444333333443211 11111 11222 234577899999997
No 454
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=30 Score=34.96 Aligned_cols=186 Identities=9% Similarity=0.025 Sum_probs=104.0
Q ss_pred eCCCCCcceeecCCCC----CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCC
Q 002196 330 YTPQSLGQSSYSTDDL----PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC 405 (954)
Q Consensus 330 ~s~~g~~~~~~~~~~~----~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 405 (954)
+-+.|..++....... ...++..+.-.+-+..+.++.+ ++..+..+.-++|.|+.+......
T Consensus 56 ~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~----------- 121 (370)
T COG5276 56 YVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTL----------- 121 (370)
T ss_pred ccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcce-----------
Confidence 4455555554433332 2344555566778888888876 344555566688888877653321
Q ss_pred CccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC
Q 002196 406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (954)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~ 485 (954)
...+.- .+--. .|.-.|++..++..|.-..+.|+.+.........+......-..++.| |+ +...+..
T Consensus 122 -----~~~lnt-~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~ 189 (370)
T COG5276 122 -----IGFLNT-DGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWR 189 (370)
T ss_pred -----eccccC-CceEE--EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEe
Confidence 111111 12222 334458888888766667788987755433222334344445677777 56 4677778
Q ss_pred CCeEEEEECCCCce---EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE
Q 002196 486 DRVIKVWDAVTGTK---QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD 546 (954)
Q Consensus 486 dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 546 (954)
|+-+.+-|+..... +.... ....+.++..+++ +....-.+.-+.+-|..+......
T Consensus 190 d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdn----r~y~vvy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 190 DGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDN----RAYLVVYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred CCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCC----eeEEEEcccceEEEecCCCCCceE
Confidence 89999999876432 22222 2225666655443 333333444566667766554433
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.10 E-value=4.6 Score=42.76 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=96.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccC----CEE-EEEEecCCCceEEEEEcCCCe
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG----SVN-DLAFSYPNKQLSVVTCGEDRV 488 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~-~~~~s~~~~~~~l~s~~~dg~ 488 (954)
+......|..+-..|||+.|..-+. ..+.|+++.+...... .......+ .|+ .+.....|. -++.++.||-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~--SLLv~~~dG~ 291 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGF--SLLVVHEDGL 291 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCce--eEEEEcCCCc
Confidence 4445577888999999998887755 6788998876432111 11111111 122 111122333 4788889999
Q ss_pred EEEE-ECCCCc-----eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCC
Q 002196 489 IKVW-DAVTGT-----KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562 (954)
Q Consensus 489 i~iw-d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 562 (954)
|.-| |++.+. .++.++-...++..+. |..+.+-+++-+..|++..+.....+... +..--..+.-+++||+
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPN 368 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcc
Confidence 8888 655432 2333443345555443 44444678888889998887644333322 2222235667899999
Q ss_pred CCEEEEEEeCCCCceEEEEEeCCCCeE
Q 002196 563 GARLFSCGTNKEGESYLVEWNESEGAV 589 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~~~~~ 589 (954)
+.++++-.. +.++++.+++..+
T Consensus 369 ~~~Ll~e~~-----gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQ-----GKIRLAQLENRNP 390 (733)
T ss_pred cchheeecC-----CceEEEEecCCCC
Confidence 999887432 2377776655443
No 456
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.61 E-value=33 Score=34.38 Aligned_cols=233 Identities=11% Similarity=0.052 Sum_probs=136.7
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
..-..++-+|||..-.++...+.|--.|..+|+... .--+....-..+..-|||. .-++-+.. -|.-.|-++..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~---ypLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET---YPLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEE---EecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc
Confidence 445567888899888888877877777888887543 1123334456677778887 34443332 45555655544
Q ss_pred eEE-Ee--ccCCCCeEEEeeeccCCccEEEEEecC---------CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 499 KQY-IF--EGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 499 ~~~-~~--~~~~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
... .+ +.-........|.+.+ .+-+++... +.|++|+. ..+...+.++..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~G~yGrLdPa~~~i~vfpa----------PqG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWG--NLWFTGQIGAYGRLDPARNVISVFPA----------PQGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceeeCCCc--cEEEeeccccceecCcccCceeeecc----------CCCCCCcceEECCCCcEE
Confidence 221 11 1123345555665444 566665421 22333332 134467889999999987
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
++.-. ...|...|..++.....-.... ......+.-+|.|..-++....+.+..+|-.+.. -......+....-
T Consensus 204 yasla----gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp 278 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP 278 (353)
T ss_pred EEecc----ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc
Confidence 77543 2247777777663222111111 1134556677888888887788899999877654 4455555445555
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++.....++.-.+-...|.|.-+|.++.
T Consensus 279 ys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 279 YSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ceeeeccCCcEEeeccccCceeecCcccc
Confidence 66777666666555555566666666554
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.43 E-value=42 Score=36.70 Aligned_cols=152 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
.+....+..++||. +++.|..-..++-||-........ -......+..+.|.+++..+++
T Consensus 238 ~Gsf~~v~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~-------------------~~~~~~~l~~v~~~~dg~l~l~ 297 (398)
T PLN00033 238 TGTFSTVNRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPH-------------------NRASARRIQNMGWRADGGLWLL 297 (398)
T ss_pred ccceeeEEEcCCCC-EEEEECCccEEEecCCCCcceEEe-------------------cCCCccceeeeeEcCCCCEEEE
Q ss_pred EEcCCEEEEEEeeCCc-----ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe--ccCCC
Q 002196 436 AYSKHIVHLYTYHGGD-----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHES 508 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~ 508 (954)
+...+ .+|....++ .+... ....-...+.++.|.+++. ++.++..|.+....-.-..-...- ..-..
T Consensus 298 g~~G~--l~~S~d~G~~~~~~~f~~~-~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~ 371 (398)
T PLN00033 298 TRGGG--LYVSKGTGLTEEDFDFEEA-DIKSRGFGILDVGYRSKKE---AWAAGGSGILLRSTDGGKSWKRDKGADNIAA 371 (398)
T ss_pred eCCce--EEEecCCCCcccccceeec-ccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeCCCCcceeEccccCCCCc
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEE
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAW 536 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iw 536 (954)
..+.+.|..+. ..+..+.+|.|.-|
T Consensus 372 ~ly~v~f~~~~---~g~~~G~~G~il~~ 396 (398)
T PLN00033 372 NLYSVKFFDDK---KGFVLGNDGVLLRY 396 (398)
T ss_pred ceeEEEEcCCC---ceEEEeCCcEEEEe
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.34 E-value=50 Score=36.23 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=50.5
Q ss_pred eccCCCeEEEecCCeEEEEEcccccEEEeeCCCCCCeeEEE-e------cCCCCceEEEEecCccEEEEeccccceEEEe
Q 002196 851 LSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA-F------HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923 (954)
Q Consensus 851 ~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~-~------sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~ 923 (954)
++.....+++-+..++.+.+- +|......+- .....|++ | .+..+..+++++.++++.||.=.+ ++...
T Consensus 249 ~~~~~~~IvvLger~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA 324 (418)
T PF14727_consen 249 FSSSESDIVVLGERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSA 324 (418)
T ss_pred cCCCCceEEEEecceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEec
Confidence 333334444445666666665 3544443332 22222222 1 221123588899999999987332 22222
Q ss_pred cCCccceeEEEEe---cCCCeEEEecCCcceecC
Q 002196 924 KGHQKRITGLAFS---NTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 924 ~~h~~~V~~l~~s---~dg~~l~s~s~Dg~I~i~ 954 (954)
.....+| ++... .-...|++-+.||.+.++
T Consensus 325 ~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 325 QLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVS 357 (418)
T ss_pred CCCCCCE-EEEecccCCCCceEEEEcCCCcEEEE
Confidence 2222332 33332 234478888999988764
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.28 E-value=2.6 Score=28.12 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcC--CeEEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNM--GDVMLW 384 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~d--g~i~iw 384 (954)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455778999999999888888877 766665
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.97 E-value=18 Score=34.94 Aligned_cols=163 Identities=15% Similarity=0.241 Sum_probs=88.0
Q ss_pred cccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecC---C---eEEEe---eccCCCC
Q 002196 740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---A---VHKLW---KWPRNER 810 (954)
Q Consensus 740 ~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d---g---~v~lw---~~~~~~~ 810 (954)
+.+..+.....|.+|++.....+..+ .+. .-+.|..++++..|.+|++.-.+ . .+|+| +......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~-~F~-----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLC-TFS-----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeE-EEc-----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 34433355578999999832222222 222 34789999999999999987654 2 45663 3322111
Q ss_pred CCCCcccCCCCcc--ccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccE-EE-----ee--
Q 002196 811 NSTGKATTNQAPQ--LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT-MT-----TF-- 880 (954)
Q Consensus 811 ~~~g~~~~~~~i~--l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~-~~-----~~-- 880 (954)
.+...-+....+. .-.....++-...++ -+..+.+++..|-..-|+.|+++++.+|.+..... .. .|
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElP---l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~ 179 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELP---LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFER 179 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEec---CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechh
Confidence 2211111110000 000001111111222 35678899999987778888899999998764433 11 11
Q ss_pred ---CCCCC-CeeEEEecCCCCceEEEEecCccEEEEecc
Q 002196 881 ---MPPPP-AATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 881 ---~~h~~-~v~~l~~sp~d~~~lasgs~dg~i~iwd~~ 915 (954)
.-|.+ .+..++|.. .++|..+ +-.+++..+.
T Consensus 180 ~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred hhhheecCceEEEEEEEe---eEEEEec-CCEEEEEEEe
Confidence 11222 256777754 4777665 4567776653
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=86.63 E-value=49 Score=35.41 Aligned_cols=153 Identities=7% Similarity=-0.044 Sum_probs=80.1
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce--eEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR--VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
...+.++.+.+++ .++ ..+..|.+..- .+..... .........++.+.+.++++.++++. .+ .+.+=..
T Consensus 172 ~g~~~~i~~~~~g--~~v-~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G----~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG--KYV-AVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GG----QIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC--eEE-EEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CC----EEEEccC
Confidence 4557777776543 444 44555655421 1222221 11223345788999999998777654 22 1322123
Q ss_pred CCCeEEEEEecC---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec-CCCCCCcceEEECCCCCEEEEE
Q 002196 585 SEGAVKRTYHGL---GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVS 660 (954)
Q Consensus 585 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~s~ 660 (954)
..|..-...... ....+..+.+.+++.. +.++.+|.+. .....++.-..... ..-....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333321211111 2225677888887765 4455677665 34455555444432 11123466777776666665 4
Q ss_pred eCCCcEEEEEc
Q 002196 661 TNDNGIKILAN 671 (954)
Q Consensus 661 ~~dg~i~iwd~ 671 (954)
+..|.|..|+-
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 56788877653
No 462
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.49 E-value=1.1e+02 Score=39.22 Aligned_cols=149 Identities=11% Similarity=0.197 Sum_probs=84.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
|-..++.|.-+++|+++=+ .|+.++.||..... |... ...-..+++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 4445667777777774422 56778888876653 2210 011234555555555666555
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc--------eEEEeccC
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--------KQYIFEGH 506 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~ 506 (954)
.++. .+-|+..+.... ..-..+.+...+++|.- .++++-....+.+|++.... ....+.+.
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 234554443211 11234777788899983 35666666677999886541 12233333
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 540 (954)
.....++.++. ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33555666643 3688889999988777654
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.49 E-value=2.5 Score=28.62 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=29.4
Q ss_pred cCCCeEEEec--CCeEEEEEcccccEEEeeCCCCCCeeEEEec
Q 002196 853 KNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFH 893 (954)
Q Consensus 853 ~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 893 (954)
|++++|.++. +++|.++|..+++.+..+.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 6788777765 68999999999988888775 3334555553
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.74 E-value=3.8 Score=47.33 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=74.3
Q ss_pred CeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEecc--CCCccccccccCCCCCCeEEEEEc--cCCCEEEEEEcCCEEEE
Q 002196 369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELG--ACSMPLQASLSSDYTASVNRVMWS--PDGTLFGVAYSKHIVHL 444 (954)
Q Consensus 369 ~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~l~s~~~dg~i~i 444 (954)
..+|+.+..||.|.+|.+++--...... .-+.. .........+...-...++.+++. ...++||+++....|.|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3488999999999999874311000000 00000 000011111222345689999999 78889999988888988
Q ss_pred EEeeCCcceeeeeeeecccCCEEEEEEecCCC--c--eEEEEEcCCCeEEEEEC
Q 002196 445 YTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK--Q--LSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 445 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~--~~l~s~~~dg~i~iwd~ 494 (954)
|-............-..|...|-+|+|.++.. . ..+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87654211111101113566799999987651 1 25788999999999887
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.70 E-value=0.17 Score=53.61 Aligned_cols=140 Identities=16% Similarity=0.303 Sum_probs=98.3
Q ss_pred eeCCCCCcceeecCCCC------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEec
Q 002196 329 AYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL 402 (954)
Q Consensus 329 ~~s~~g~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 402 (954)
.|-+.+..++....+.. .++....+..++....++|.-+|..+++.+-..+.+.+||+.+.....-
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-------- 112 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-------- 112 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH--------
Confidence 34455555555544332 3455566667788889999999998888888899999999976532210
Q ss_pred cCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEE
Q 002196 403 GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT 482 (954)
Q Consensus 403 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s 482 (954)
..-..|.... +.|++.+..++.+...|.+.|++..+.+... ....|...+++++|.+.+. .+.
T Consensus 113 ---------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil 175 (615)
T KOG2247|consen 113 ---------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VIL 175 (615)
T ss_pred ---------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eee
Confidence 0011233333 7899999999999999999999987755443 3444999999999999886 677
Q ss_pred EcCCCeEEEEE
Q 002196 483 CGEDRVIKVWD 493 (954)
Q Consensus 483 ~~~dg~i~iwd 493 (954)
++.|..+.+-.
T Consensus 176 ~dcd~~L~v~~ 186 (615)
T KOG2247|consen 176 CDCDNTLSVTT 186 (615)
T ss_pred cCcHHHHHHhh
Confidence 77776665544
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.47 E-value=26 Score=43.32 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCcee
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERI 392 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~ 392 (954)
....++|+|... ++|.|+..|.|+++-...-+..
T Consensus 37 ~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 37 TPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 455788999888 8999999999999987654443
No 467
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.15 E-value=60 Score=35.02 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=8.9
Q ss_pred eEEEEECCCCceE
Q 002196 488 VIKVWDAVTGTKQ 500 (954)
Q Consensus 488 ~i~iwd~~~~~~~ 500 (954)
.+..||..+.+..
T Consensus 86 ~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 86 DVYRYDPKKNSWQ 98 (346)
T ss_pred cEEEEECCCCEEe
Confidence 5777888776543
No 468
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.09 E-value=4.8 Score=38.22 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=25.4
Q ss_pred CCeEEEEEccCC------CEEEEEEcCCEEEEEEeeC
Q 002196 419 ASVNRVMWSPDG------TLFGVAYSKHIVHLYTYHG 449 (954)
Q Consensus 419 ~~V~~l~~spdg------~~l~s~~~dg~i~iwd~~~ 449 (954)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999943 3788889999999998654
No 469
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.94 E-value=53 Score=34.28 Aligned_cols=283 Identities=11% Similarity=0.100 Sum_probs=121.2
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC
Q 002196 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (954)
.+.-...+..|.|..+.. -.++|. .|. |+...+|-.. |.... ......-.-...++.|..+ .
T Consensus 12 ~l~t~~~l~dV~F~d~~~-G~~VG~-~g~--il~T~DGG~t-------W~~~~------~~~~~~~~~~l~~I~f~~~-~ 73 (302)
T PF14870_consen 12 SLPTDKPLLDVAFVDPNH-GWAVGA-YGT--ILKTTDGGKT-------WQPVS------LDLDNPFDYHLNSISFDGN-E 73 (302)
T ss_dssp E-S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-E
T ss_pred ecCCCCceEEEEEecCCE-EEEEec-CCE--EEEECCCCcc-------ccccc------cCCCccceeeEEEEEecCC-c
Confidence 344556899999995555 556664 343 3444333211 11100 0000001224667777643 3
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eEEEeccCCCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESP 509 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 509 (954)
.+++ +..+ +.+...+.|+...... +. .-.+....+....++. .++ .+..|.|+.=. +.|+ -......-.+.
T Consensus 74 g~iv-G~~g-~ll~T~DgG~tW~~v~-l~~~lpgs~~~i~~l~~~~--~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs 146 (302)
T PF14870_consen 74 GWIV-GEPG-LLLHTTDGGKTWERVP-LSSKLPGSPFGITALGDGS--AEL-AGDRGAIYRTT-DGGKTWQAVVSETSGS 146 (302)
T ss_dssp EEEE-EETT-EEEEESSTTSS-EE-----TT-SS-EEEEEEEETTE--EEE-EETT--EEEES-STTSSEEEEE-S----
T ss_pred eEEE-cCCc-eEEEecCCCCCcEEee-cCCCCCCCeeEEEEcCCCc--EEE-EcCCCcEEEeC-CCCCCeeEcccCCcce
Confidence 4444 4555 3344445555443221 11 1223344455444443 233 34445544322 2332 22333444566
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe-CCCCe
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN-ESEGA 588 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd-~~~~~ 588 (954)
+..+... .+|.++++++.-....-||-....-..........+..+.|+|++...+.+ ..+ .|+.=+ .....
T Consensus 147 ~~~~~r~--~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg----~~~~s~~~~~~~ 219 (302)
T PF14870_consen 147 INDITRS--SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG----QIQFSDDPDDGE 219 (302)
T ss_dssp EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT----EEEEEE-TTEEE
T ss_pred eEeEEEC--CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc----EEEEccCCCCcc
Confidence 7776654 445777777666666678654322233333345689999999998876654 222 255544 12222
Q ss_pred EEEE--Eec-CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec-CCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 589 VKRT--YHG-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 589 ~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
.-.. ... .....+..+++.+++...++|+ .|.+ +.....|+.-+.... ..-...++.+.|.++.+-++. +.+|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G 296 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG 296 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence 1111 111 1223477889998876666555 4544 344556665555543 222345778888765555554 5677
Q ss_pred cEEEE
Q 002196 665 GIKIL 669 (954)
Q Consensus 665 ~i~iw 669 (954)
.+.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77554
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.71 E-value=5.3 Score=39.55 Aligned_cols=68 Identities=7% Similarity=0.175 Sum_probs=50.4
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCceeEEE-------ec-----CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 606 FDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-------DA-----DGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 606 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~-----~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
+..++.++++.+.+|.+++||+.+++.+..- .. ......|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4556889999999999999999987765332 10 02345688899998888777665 57889998764
Q ss_pred C
Q 002196 674 G 674 (954)
Q Consensus 674 ~ 674 (954)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 471
>PLN02193 nitrile-specifier protein
Probab=83.88 E-value=83 Score=35.64 Aligned_cols=149 Identities=11% Similarity=0.004 Sum_probs=71.8
Q ss_pred EEEEEcCC-----CeEEEEECCCCceEEEeccC--CCCe--EEEeeeccCCccEEEEEecCC-----eEEEEeCCCCCce
Q 002196 479 SVVTCGED-----RVIKVWDAVTGTKQYIFEGH--ESPV--YSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSR 544 (954)
Q Consensus 479 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~v--~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~ 544 (954)
+++.|+.+ ..+.++|+.+.+....-... ..+. .+++. .. +++.+.|+.++ .+..||+.+..-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~-~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DE-ENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--EC-CEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45666654 46888998876543321110 1111 11221 12 25666776543 3566776653321
Q ss_pred eEee-----CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec---CCCCCeEEEEEeCCCCEEEEE
Q 002196 545 VDYD-----APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTKNRFLAA 616 (954)
Q Consensus 545 ~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~ 616 (954)
.... ........+. -+++.++.++.++.....+.+||+.+.+....-.. .......++ ..-+++.++.|
T Consensus 308 ~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEEC
Confidence 1100 0011111122 25666666665433234589999988765433211 111012222 22356677777
Q ss_pred ECC--------------CeEEEEECCCCcee
Q 002196 617 GDE--------------FMIKFWDMDNVNLL 633 (954)
Q Consensus 617 ~~d--------------g~i~iwd~~~~~~~ 633 (954)
+.. ..+.+||..+.+..
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEE
Confidence 742 24788888876543
No 472
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.31 E-value=55 Score=33.20 Aligned_cols=151 Identities=10% Similarity=0.041 Sum_probs=87.7
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC--CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
+-+..+.++. +++..+..+.-+++.|+.+.........- .+--+++.. .|++..++..+.. +.+.|+.
T Consensus 87 ~l~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddg----fLivdvs 156 (370)
T COG5276 87 DLFADVRVSE----EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDG----FLIVDVS 156 (370)
T ss_pred hhhheeEecc----cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCc----EEEEECC
Confidence 3445555542 57888888888999999987665443221 133344444 5677777653221 5667766
Q ss_pred CC---eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 586 EG---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 586 ~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
+. .....+..... ....++.| |++-..+..|+-+.+-|+.+......+..-.....+.++..+++..+++...
T Consensus 157 dpssP~lagrya~~~~-d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~- 232 (370)
T COG5276 157 DPSSPQLAGRYALPGG-DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD- 232 (370)
T ss_pred CCCCceeeeeeccCCC-CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-
Confidence 54 34444444332 33556666 6777777788889999987754333322211122567777777665655442
Q ss_pred CCcEEEEEccC
Q 002196 663 DNGIKILANAD 673 (954)
Q Consensus 663 dg~i~iwd~~~ 673 (954)
.-+.+-|..+
T Consensus 233 -egvlivd~s~ 242 (370)
T COG5276 233 -EGVLIVDVSG 242 (370)
T ss_pred -cceEEEecCC
Confidence 2355555543
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.27 E-value=28 Score=40.04 Aligned_cols=102 Identities=13% Similarity=0.178 Sum_probs=60.5
Q ss_pred EEEEccCCCEEEEEEcCC-----EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 423 RVMWSPDGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
.+.|-|.|..+++-+.|| .|+++.-..-+. .....-.+....+..++|.-... +......+.+++|-..+-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~---vlav~~~n~~~lwttkNy 326 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLST---VLAVAEGNLLKLWTTKNY 326 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHH---HHHHhhcceEEEEEccce
Confidence 388999999999987665 355555432110 00001123344567778876665 334455578999976655
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEe
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTA 528 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 528 (954)
.........-..+.-+.|+|..+...+++++
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEEEEecC
Confidence 4433333344556778899987755555443
No 474
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.22 E-value=65 Score=33.90 Aligned_cols=236 Identities=12% Similarity=-0.006 Sum_probs=114.1
Q ss_pred EEEEEEcCCeEEEEeCCC--CceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE-cCCEEEEEEe
Q 002196 371 LLVVGTNMGDVMLWEVGS--RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTY 447 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~iwd~ 447 (954)
.|+.|+.+|-..+. +.. ++... -.+...|+++...+.-+.|++-+ ....++++++
T Consensus 15 ~lL~GTe~Gly~~~-~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 15 WLLVGTEEGLYVLN-ISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred EEEEEeCCceEEEE-cccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 67889988855444 543 22221 23567999999999877776654 3445999998
Q ss_pred eCCcc-----------eee-eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC----ceEEEe---c-cCC
Q 002196 448 HGGDE-----------LRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIF---E-GHE 507 (954)
Q Consensus 448 ~~~~~-----------~~~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~---~-~~~ 507 (954)
..-.. .+. ....-+|......++.. .++...++++....+|.++.+... .....+ . .-.
T Consensus 73 ~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~ 151 (302)
T smart00036 73 SALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISP 151 (302)
T ss_pred HHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCC
Confidence 43221 000 00122344444444544 343334555555667777644322 111111 0 112
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCC--CC--c-eeE--eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDN--LG--S-RVD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~--~-~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
.++..+..+.+.....+..|+..+...++++.. .. . ... .........++..-+++.++++-. ....
T Consensus 152 ~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~------~~~v 225 (302)
T smart00036 152 VPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYD------EFGV 225 (302)
T ss_pred ccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEEC------cEEE
Confidence 233333333333234677776653334444432 10 0 000 111110233333344555555432 1233
Q ss_pred EEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
..|....+..+...-.-.....++++. ..++++-+.+ .|.++++.+++.++++..
T Consensus 226 ~Vn~~G~~~~r~~~l~w~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 226 FVNLYGKRRSRNPILHWEFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEeCCCCccccceEEEcCCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 444332122111111111144566665 4677777654 599999999999888864
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.03 E-value=6.8 Score=38.80 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=50.6
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCcceeeee----eee-------cccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL----EIE-------AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~-------~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~ 494 (954)
+..++++|++.+.+|.+++||+.+++.+.... .+. .....|..+.++.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 45678999999999999999999887543320 122 3556788899998887 344443 478899986
Q ss_pred CCCceE
Q 002196 495 VTGTKQ 500 (954)
Q Consensus 495 ~~~~~~ 500 (954)
.-+..+
T Consensus 95 ~L~~W~ 100 (219)
T PF07569_consen 95 DLGCWI 100 (219)
T ss_pred ccceeE
Confidence 544433
No 476
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.91 E-value=70 Score=34.07 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=36.2
Q ss_pred CCCEEEEEEeC-CCCceEEEEEeCCCCeEEEE--EecCCCCCeEEEEEeCCCCEEEEEECCC----eEEEEECCCCce
Q 002196 562 DGARLFSCGTN-KEGESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDEF----MIKFWDMDNVNL 632 (954)
Q Consensus 562 ~g~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 632 (954)
+++..+.++.. +.....+..||+.+.+.... +.... .....+...+++..+.|+.++ .+.+||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 45555555532 12234588899887654332 22111 112222334567777777553 356788877554
No 477
>PLN02153 epithiospecifier protein
Probab=82.91 E-value=73 Score=34.27 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=28.2
Q ss_pred EEEEEeCCCCeEEEEEe-c--CCCCCeEEEEEeCCCCEEEEEECC--------------CeEEEEECCCCce
Q 002196 578 YLVEWNESEGAVKRTYH-G--LGKRSVGVVQFDTTKNRFLAAGDE--------------FMIKFWDMDNVNL 632 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~ 632 (954)
.+.+||+.+.+....-. + .......++ ...++..++.|+.. ..+..+|..+.+-
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 48889988775543221 1 111012222 22345677777741 2577888776543
No 478
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=82.75 E-value=2.4 Score=38.13 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccccchh
Q 002196 72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQ 129 (954)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 129 (954)
++|.++-+.|+||+..+...+|..++++--.-+.....+++++|..+.......+++.
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~ 86 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENEL 86 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHH
Confidence 9999999999999999999999999986544444445677888877766655554443
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.65 E-value=16 Score=39.73 Aligned_cols=95 Identities=7% Similarity=0.110 Sum_probs=56.4
Q ss_pred CccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCC---CCccccCCCCcccccccCCCCCCCCCccEEEe
Q 002196 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTN---QAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (954)
Q Consensus 775 ~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 851 (954)
-.-.|..+..++.|..++-++.+|.+.++= +. .+.+++.+... .+++...+.+..-.. ...-.+..++|
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL-p~-rwG~~s~~eDgk~~v~CRt~~i~~~~fts------s~~ltl~Qa~W 173 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVMEL-PK-RWGKNSEFEDGKSTVNCRTTPVAERFFTS------STSLTLKQAAW 173 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEEc-hh-hcCccceecCCCceEEEEeecccceeecc------CCceeeeeccc
Confidence 345677889999999999999998877753 11 12233332222 123333333322111 13345667899
Q ss_pred ccCC----CeEEEecCCeEEEEEcccccEE
Q 002196 852 SKND----SYVMSASGGKISLFNMMTFKTM 877 (954)
Q Consensus 852 s~dg----~~la~~sdg~i~iwd~~~~~~~ 877 (954)
+|+. .+++-.+|+.|++||......+
T Consensus 174 HP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 174 HPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred cCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 9975 3445555999999998654433
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.57 E-value=30 Score=35.65 Aligned_cols=104 Identities=12% Similarity=0.174 Sum_probs=65.0
Q ss_pred CeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe------cCCeEEEEeCCCCCceeEee----CCCCceEE
Q 002196 487 RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA------TDGKIKAWLYDNLGSRVDYD----APGHSSTM 556 (954)
Q Consensus 487 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~ 556 (954)
..|++||..+.+....-.+-.+.|.++.|.... ++++.|. ....+..||+.+..-...-. .-.+++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 479999988877666555667889999987332 5666664 34568889887654322211 11356777
Q ss_pred EEEC-CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 557 MAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 557 ~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
+.+. .|+..+..++....+..++..||-.+...+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 7664 34444554444355677899998666555443
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=82.36 E-value=1.1e+02 Score=39.18 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=79.1
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
|...++.+.-.+++ ..+=. .|+.++.||.....-...-......++.+.-.-||+..+ .+++ .+-|+.
T Consensus 361 H~A~LTgv~~~~~g--e~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~-----~l~nLS 428 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDG--EQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDD-----TLVNLS 428 (1774)
T ss_pred HHHHhhccccCCCC--CeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCC-----ceeecC
Confidence 55555555443332 33221 356677776553211100011122455555555665444 1111 233444
Q ss_pred CCeEEEEEecCCCCCeEEEEEeCCCCE-EEEEECCCeEEEEECCCC------ceeEEEecCCCCCCcceEEECCCCCEEE
Q 002196 586 EGAVKRTYHGLGKRSVGVVQFDTTKNR-FLAAGDEFMIKFWDMDNV------NLLASIDADGGLQASPCIRFNKEGILLA 658 (954)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (954)
.+.....+ -..+.+....+++.. ++++.....+.+|++... +....+...++.....+|.++++ .|+
T Consensus 429 s~~~~~~~----v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLF 502 (1774)
T PF11725_consen 429 SGQMSEAE----VDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLF 502 (1774)
T ss_pred CCCcchhh----hhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEE
Confidence 43321111 114566777888877 555556667799998753 12234444444557788888877 577
Q ss_pred EEeCCCcEEEEEccC
Q 002196 659 VSTNDNGIKILANAD 673 (954)
Q Consensus 659 s~~~dg~i~iwd~~~ 673 (954)
++..+|.++.=+...
T Consensus 503 vADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 503 VADSEGKLYSADLPA 517 (1774)
T ss_pred EEeCCCCEEeccccc
Confidence 788899988776643
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.14 E-value=51 Score=32.00 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=35.3
Q ss_pred CEEEEEECCCeEEEEECCC--CceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 611 NRFLAAGDEFMIKFWDMDN--VNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
+.|+.+...+.|.+|++.. .+.+..+.. .+.|..+.++..|.+|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 4444446667899999883 445555543 457899999999999998644
No 483
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=81.06 E-value=1.5e+02 Score=36.75 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=18.6
Q ss_pred CccceEEEEEecCCceEEEeecCCeEEEe
Q 002196 775 TAMRVSRLIYTNSGLAILALASNAVHKLW 803 (954)
Q Consensus 775 ~~~~v~~~~~spdg~~l~~~~~dg~v~lw 803 (954)
+-+.+.++|.+|||..+++-. |.++|-
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~--gN~rIr 686 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADS--GNSRIR 686 (1899)
T ss_pred ccCCcceEEECCCCcEEEecC--Cchhhh
Confidence 556788999999998665544 344443
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.04 E-value=28 Score=34.88 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=81.4
Q ss_pred EEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC----CeEEEEEe-cCCCCCeEEEEEeC
Q 002196 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----GAVKRTYH-GLGKRSVGVVQFDT 608 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~----~~~~~~~~-~~~~~~i~~~~~~~ 608 (954)
.+||+.+.+...........+.+-.+-+||+.+.+++. .++...+++++..+ ......-. -.....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 37888876544332222334445567899999988875 34566788888654 11111110 01111334456678
Q ss_pred CCCEEEEEECCC-eEEEEECCC-CceeEEEec------CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEE
Q 002196 609 TKNRFLAAGDEF-MIKFWDMDN-VNLLASIDA------DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 680 (954)
Q Consensus 609 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~~~~------~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 680 (954)
||+.|+.||... ...+|.-.. ......+.. .....--..+...|+|++++.+..+ -.|||..++ +.++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC-eEEee
Confidence 999999998654 445555422 111111110 0111122367778999999988765 456688777 55555
Q ss_pred ecc
Q 002196 681 VES 683 (954)
Q Consensus 681 ~~~ 683 (954)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 543
No 485
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=80.57 E-value=2.8 Score=38.19 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccc
Q 002196 72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFR 125 (954)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 125 (954)
++|.++-+.|++|+..+...+|..++.+--.-+.....+++++|..+.......
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~ 93 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLE 93 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHh
Confidence 899999999999999999999999998654444433456677776554443333
No 486
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.15 E-value=97 Score=33.88 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=10.0
Q ss_pred CeEEEEECCCCceE
Q 002196 487 RVIKVWDAVTGTKQ 500 (954)
Q Consensus 487 g~i~iwd~~~~~~~ 500 (954)
..+.+||..+.+..
T Consensus 189 ~~v~~YD~~t~~W~ 202 (376)
T PRK14131 189 KEVLSYDPSTNQWK 202 (376)
T ss_pred ceEEEEECCCCeee
Confidence 35888998876654
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.05 E-value=9.9 Score=36.10 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCccEEEeccCCCeEEEecCCeEEEEEccc
Q 002196 844 DAVPCFALSKNDSYVMSASGGKISLFNMMT 873 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~sdg~i~iwd~~~ 873 (954)
....+++||.||+ ||++.+..|.|.+..+
T Consensus 5 s~~~~l~WS~Dg~-laV~t~~~v~IL~~~~ 33 (173)
T PF12657_consen 5 SCPNALAWSEDGQ-LAVATGESVHILDPQT 33 (173)
T ss_pred CCCcCeeECCCCC-EEEEcCCeEEEEeccC
Confidence 3446899999994 6666778888885443
No 488
>PRK13684 Ycf48-like protein; Provisional
Probab=80.04 E-value=89 Score=33.43 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=38.6
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEE
Q 002196 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 667 (954)
.+..+.+.|++.++++ +..|.+..-.-..++....... .....++++.+.++++.++++ ..|.++
T Consensus 174 ~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 174 VVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLA-RGGQIR 238 (334)
T ss_pred eEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEe-cCCEEE
Confidence 6788889898765544 4456554321122233333332 224578899999999877665 456554
No 489
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.02 E-value=30 Score=37.73 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=86.5
Q ss_pred cCCCEEEE-EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCce-----EEEEEcCCCeEEEEECC-CCceE
Q 002196 428 PDGTLFGV-AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL-----SVVTCGEDRVIKVWDAV-TGTKQ 500 (954)
Q Consensus 428 pdg~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~-----~l~s~~~dg~i~iwd~~-~~~~~ 500 (954)
.|.++|.. |+....++-.|++.|+.+. ...-|..- -+.|.|+.+.- .-+.|-.+..|.-.|.+ .|..+
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvve---eW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVE---EWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeee---EeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 34444443 4444567777888888766 45545543 46677653200 02345555566556654 33333
Q ss_pred EEec--c--CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCc
Q 002196 501 YIFE--G--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 501 ~~~~--~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
.... . ......+..-. .+ .+++.+|..|-|++||--.......+..-+..|..+..+.+|+++++.+ .
T Consensus 552 ~v~esKdY~tKn~Fss~~tT--es-GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-----k 623 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTT--ES-GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-----K 623 (776)
T ss_pred eeeeehhccccccccccccc--cC-ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-----c
Confidence 2221 1 11122222222 22 5999999999999999655455555666677899999999999988876 3
Q ss_pred eEEEEEeCC
Q 002196 577 SYLVEWNES 585 (954)
Q Consensus 577 ~~i~iwd~~ 585 (954)
.++.+-|++
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 457777753
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.14 E-value=63 Score=33.35 Aligned_cols=114 Identities=11% Similarity=0.171 Sum_probs=66.6
Q ss_pred CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE------cCCEEEEEEeeCCcc
Q 002196 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY------SKHIVHLYTYHGGDE 452 (954)
Q Consensus 379 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~------~dg~i~iwd~~~~~~ 452 (954)
..|.+||..+.+...- -.+-.+.|+.+.|..+.++++.|. ....+..||..+..-
T Consensus 16 ~~lC~yd~~~~qW~~~-------------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP-------------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecC-------------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 3599999888765431 234568999999997777777774 345688899887542
Q ss_pred eeeeeeeec-----ccCCEEEEEEecC-CCceEEEEEc-CCC--eEEEEECCCCceEEE-eccCCCCeEEEeee
Q 002196 453 LRNHLEIEA-----HVGSVNDLAFSYP-NKQLSVVTCG-EDR--VIKVWDAVTGTKQYI-FEGHESPVYSICPH 516 (954)
Q Consensus 453 ~~~~~~~~~-----h~~~v~~~~~s~~-~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~ 516 (954)
. .+.+ -.++|..+.+..+ +.. +.+.|. .++ .|..||=.+...+.. .......|..+.+.
T Consensus 77 -~---~~~~~~s~~ipgpv~a~~~~~~d~~~-~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 77 -S---SLGGGSSNSIPGPVTALTFISNDGSN-FWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred -e---ecCCcccccCCCcEEEEEeeccCCce-EEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 1 2222 3477888887543 333 344443 333 466666443333332 22223445555443
No 491
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.41 E-value=56 Score=35.92 Aligned_cols=39 Identities=5% Similarity=0.156 Sum_probs=28.8
Q ss_pred CeEEEEEeCCC---CEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 600 SVGVVQFDTTK---NRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 600 ~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
.+..++|+|+. ..++.-+.|..|++||+.....+....+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 45557788875 6777788899999999987766654443
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.00 E-value=1.2e+02 Score=33.77 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=39.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
.-...+.|+|.|||+ +|++--..|.|++++..++.......+ .......-.+....|+++|+-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 345688999999997 776665579999998665542211000 000011136788999999874
No 493
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.40 E-value=1.8e+02 Score=35.37 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCCCeEEEEEccCC------CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec---CCC----ceEEEEE
Q 002196 417 YTASVNRVMWSPDG------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNK----QLSVVTC 483 (954)
Q Consensus 417 h~~~V~~l~~spdg------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~----~~~l~s~ 483 (954)
-+..|.|+++.++. ++++.|+.|++++++.+.....+... ...+-..++.++.+-+ ++. ++++.+|
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l-s~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~G 659 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL-SVQGLSSPPESLCIVEMEATGGTDVAQLYLLIG 659 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc-cccccCCCccceEEEEecccCCccceeEEEEec
Confidence 35789999999875 57999999999999999866555432 3445555565555543 332 5678888
Q ss_pred cCCCeEEEE--ECCCCc
Q 002196 484 GEDRVIKVW--DAVTGT 498 (954)
Q Consensus 484 ~~dg~i~iw--d~~~~~ 498 (954)
-..|.+.-+ |..+|+
T Consensus 660 L~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 660 LRNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred ccccEEEEEEecccccc
Confidence 888877654 444554
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.30 E-value=49 Score=40.83 Aligned_cols=162 Identities=12% Similarity=0.197 Sum_probs=93.5
Q ss_pred ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCc------cEEEEEecCCeEEE
Q 002196 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI------QFIFSTATDGKIKA 535 (954)
Q Consensus 462 h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~l~s~s~dg~i~i 535 (954)
|...-+.|-+-|.=.+ ..+ +-|+.+.+|+..++.....+.+-...|..+.......| ++++..+.--.|.+
T Consensus 77 ~~~~~~~mGiFpeI~R-aWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGR-AWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI 153 (1311)
T ss_pred Ccceeeeeccchhhcc-eEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEE
Confidence 3333344444454443 233 35679999999998877777776666766643222221 23333333444544
Q ss_pred EeCCC----CCc-----eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC---e-E-------------
Q 002196 536 WLYDN----LGS-----RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG---A-V------------- 589 (954)
Q Consensus 536 wd~~~----~~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~---~-~------------- 589 (954)
+-+.. ... .......+..|+++....+|+.+++|-. + ..+=..|....+ + +
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 43221 111 1223334558899998889988887642 2 212222332221 1 0
Q ss_pred ---EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 590 ---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 590 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+..+.+....+|..+.+....+.+++-++.|+|.+||+..
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1122333344899999988888999999999999999976
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.87 E-value=1.1e+02 Score=32.89 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=102.3
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeee--ccCCccE--EEEEe-cC---CeEEEEeCCCCCcee-EeeC
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH--HKENIQF--IFSTA-TD---GKIKAWLYDNLGSRV-DYDA 549 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~--l~s~s-~d---g~i~iwd~~~~~~~~-~~~~ 549 (954)
+++....++-+.+||+. |+.+..+. .+..+.+.+. ..-+|+. |+.++ .+ .+|++|.++...... ....
T Consensus 70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 57778888999999964 66666664 2334433321 1111222 33443 32 469999876432222 2211
Q ss_pred -------CCCceEEEEE--CC-CCCEEEEEEeCCCCc-eEEEEEeCCCC----eEEEEEecCCCCCeEEEEEeCCCCEEE
Q 002196 550 -------PGHSSTMMAY--SA-DGARLFSCGTNKEGE-SYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 550 -------~~~~v~~~~~--s~-~g~~l~~~~~~~~~~-~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~ 614 (954)
....++.+|+ ++ +|.+.+.... +++. ....+++-..+ +.+++|.... .+..|.......+|+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRLY 223 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEEE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCEE
Confidence 1124667776 33 4554444332 2222 12333443344 5678887654 688888998889999
Q ss_pred EEECCCeEEEEECCCC-----ceeEEEecCCCCCCcceEEEC--CCC--CEEEEEeCCCcEEEEEccCCCeeEEEe
Q 002196 615 AAGDEFMIKFWDMDNV-----NLLASIDADGGLQASPCIRFN--KEG--ILLAVSTNDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 615 ~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~ 681 (954)
.+-++.-|.-|+.+.. ..+.......-...|-.+++- .++ -+|++.-.+++..||+..........+
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 9999988888887632 222222222233456677763 333 345555556789999987543433333
No 496
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=76.76 E-value=9.6 Score=32.54 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=51.2
Q ss_pred CcchHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc-HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHH
Q 002196 2 SSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFN-MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (954)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (954)
..+++|=...|.+|++..| +.+.+++|-||++. ++.- -|+.+..|. ..+... ..-...+..
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~r--------Ld~ii~~lg---~~~~~~----~~~~~~~~~ 93 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNR--------LDKIIEKLG---YEEDEE----EEEEDERKE 93 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHH--------HHHHHHHhC---CCCCcc----cccchhHHH
Confidence 3456777888999999998 66778999999996 2211 122233332 211111 123346788
Q ss_pred HHHHHhcCC--HHHHHHHHH
Q 002196 81 YLEALDKRD--RAKAVEILV 98 (954)
Q Consensus 81 ~~ell~~~~--~~~a~~~l~ 98 (954)
.|+.|+.|+ .++|+..|+
T Consensus 94 IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 94 ILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHcCCCCHHHHHHHhC
Confidence 999999998 667887764
No 497
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.62 E-value=13 Score=43.33 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=46.3
Q ss_pred cCCCEEEEEEcCCEEEEEEeeC----Ccceeeeeeeec--------------------ccCCEEEEEEec----CCCceE
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHG----GDELRNHLEIEA--------------------HVGSVNDLAFSY----PNKQLS 479 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~--------------------h~~~v~~~~~s~----~~~~~~ 479 (954)
++...++.+..||.+....... +...... .+.. ....+..++++. +.. +
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT--F 232 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT--E
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC--E
Confidence 4778888899999888877664 2211110 1111 123455566665 444 7
Q ss_pred EEEEcCCCeEEEEECCCCceEEEeccC
Q 002196 480 VVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (954)
Q Consensus 480 l~s~~~dg~i~iwd~~~~~~~~~~~~~ 506 (954)
+++.+.|+.+|+||+.+++++.+..-.
T Consensus 233 l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 899999999999999999998776543
No 498
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.14 E-value=1.4e+02 Score=33.73 Aligned_cols=198 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred eEEEEEcCCCeE--EEEECCCCceEEEeccC---CCCeEEEeeeccCCccEEEEE---ecCCeEEEEeCCCCCceeEeeC
Q 002196 478 LSVVTCGEDRVI--KVWDAVTGTKQYIFEGH---ESPVYSICPHHKENIQFIFST---ATDGKIKAWLYDNLGSRVDYDA 549 (954)
Q Consensus 478 ~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~ 549 (954)
+.+.....+|.. ..+.+.++.....+..- ...+..-......++-++++. ...+...++| ..+..+..+..
T Consensus 67 V~v~~~~~~G~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~ 145 (477)
T PF05935_consen 67 VTVTYTDEDGKTETKTYTITTPPLPGDIPDTPINEVTVLKTSDEEMEDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPL 145 (477)
T ss_dssp EEEEEEE-TTEEEEEEEEEE----------TT-SEEEEEE-E-TT-TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-G
T ss_pred EEEEEEccCCeEeeeEEEEECCCcCccccccccceeeEeeccccccCCcEEEEeCCCCCCCceEEEEC-CCccEEEEEcc
Q ss_pred CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCC---eEEEEEeCCCCEEEEEE---------
Q 002196 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS---VGVVQFDTTKNRFLAAG--------- 617 (954)
Q Consensus 550 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~--------- 617 (954)
.......+...++|.+++... ..+..+|+- |+.+..+..... . =+.+...|+|++|+.+.
T Consensus 146 ~~~~~~~~~~l~nG~ll~~~~------~~~~e~D~~-G~v~~~~~l~~~-~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~ 217 (477)
T PF05935_consen 146 DSGSDNSFKQLPNGNLLIGSG------NRLYEIDLL-GKVIWEYDLPGG-YYDFHHDIDELPNGNLLILASETKYVDEDK 217 (477)
T ss_dssp GGT--SSEEE-TTS-EEEEEB------TEEEEE-TT---EEEEEE--TT-EE-B-S-EEE-TTS-EEEEEEETTEE-TS-
T ss_pred CccccceeeEcCCCCEEEecC------CceEEEcCC-CCEEEeeecCCc-ccccccccEECCCCCEEEEEeecccccCCC
Q ss_pred -----CCCeEEEEECCCCceeEEEecCCCC-------------------------CCcceEEECC-CCCEEEEEeCCCcE
Q 002196 618 -----DEFMIKFWDMDNVNLLASIDADGGL-------------------------QASPCIRFNK-EGILLAVSTNDNGI 666 (954)
Q Consensus 618 -----~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------~~v~~v~~s~-~~~~l~s~~~dg~i 666 (954)
.|. |..+| .+|+.+..+....+. ..++++.+.+ ++.+++++-.-..|
T Consensus 218 ~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V 295 (477)
T PF05935_consen 218 DVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAV 295 (477)
T ss_dssp EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EE
T ss_pred CccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEE
Q ss_pred EEEEccCCCeeEEEecccccc
Q 002196 667 KILANADGIRLLRTVESRTFD 687 (954)
Q Consensus 667 ~iwd~~~~~~~~~~~~~~~~~ 687 (954)
...|..++ +....+-.+...
T Consensus 296 ~~Id~~t~-~i~Wilg~~~~w 315 (477)
T PF05935_consen 296 IKIDYRTG-KIKWILGPPGGW 315 (477)
T ss_dssp EEEE-TTS--EEEEES-STT-
T ss_pred EEEECCCC-cEEEEeCCCCCC
No 499
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=75.56 E-value=9.6 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=26.9
Q ss_pred CCceEEE-EecCccEEEEeccccceEEEecCCccceeEEEEe
Q 002196 896 DNNIIAI-GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936 (954)
Q Consensus 896 d~~~las-gs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 936 (954)
+++.|.+ ...+++|.++|..+++.+..+... ..-..+.|+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 4554544 446789999999999888877753 333455553
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.90 E-value=2e+02 Score=34.81 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=47.8
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE----ecCC-------------CCCCcceEEECCCCCEEEEEeC
Q 002196 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI----DADG-------------GLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~-------------~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
.|.++....-+.+++..-.||+|.++|..+.+.+... .... ....+..++|||.+..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 5666666666778888899999999998876554433 1000 0112335889999999999888
Q ss_pred CCcEE
Q 002196 663 DNGIK 667 (954)
Q Consensus 663 dg~i~ 667 (954)
+|.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 88855
Done!