Query 002196
Match_columns 954
No_of_seqs 971 out of 4199
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 7.8E-63 2.7E-67 580.1 69.5 522 308-953 9-575 (577)
2 1nr0_A Actin interacting prote 100.0 2E-63 7E-68 585.4 61.6 551 324-953 20-606 (611)
3 1nr0_A Actin interacting prote 100.0 1E-59 3.4E-64 554.0 60.2 506 355-953 17-562 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 9.1E-59 3.1E-63 545.5 65.6 504 351-953 10-534 (577)
5 1pgu_A Actin interacting prote 100.0 6.4E-56 2.2E-60 525.9 56.9 534 354-953 16-609 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 7.1E-56 2.4E-60 568.7 59.3 543 320-953 613-1244(1249)
7 3sfz_A APAF-1, apoptotic pepti 100.0 5E-56 1.7E-60 570.1 53.7 543 351-953 610-1202(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-52 8.6E-57 507.9 55.1 540 321-953 16-778 (902)
9 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-52 1.6E-56 505.4 56.9 541 349-936 10-690 (902)
10 1pgu_A Actin interacting prote 100.0 3.5E-51 1.2E-55 485.2 53.1 526 322-916 18-614 (615)
11 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-48 1.3E-52 475.1 50.9 460 350-945 6-486 (814)
12 1vyh_C Platelet-activating fac 100.0 1.7E-45 5.8E-50 410.4 42.8 284 354-671 106-409 (410)
13 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-43 1.3E-47 430.7 55.8 449 320-903 11-486 (814)
14 3ow8_A WD repeat-containing pr 100.0 4.2E-40 1.4E-44 353.3 42.6 295 347-672 22-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 1.3E-39 4.4E-44 353.5 46.2 292 348-670 46-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 2.2E-39 7.5E-44 353.2 45.0 295 348-670 55-354 (354)
17 3ow8_A WD repeat-containing pr 100.0 4.7E-39 1.6E-43 345.1 43.6 289 414-806 28-320 (321)
18 1vyh_C Platelet-activating fac 100.0 1.8E-39 6E-44 361.8 41.2 286 414-805 104-409 (410)
19 2ynn_A Coatomer subunit beta'; 100.0 4.3E-39 1.5E-43 343.3 41.7 291 349-673 5-302 (304)
20 1got_B GT-beta; complex (GTP-b 100.0 9.6E-39 3.3E-43 346.6 44.2 286 414-804 51-340 (340)
21 3frx_A Guanine nucleotide-bind 100.0 9.3E-39 3.2E-43 343.1 42.5 299 349-674 9-318 (319)
22 3iz6_a 40S ribosomal protein R 100.0 2E-39 6.8E-44 357.8 37.4 302 347-674 56-376 (380)
23 4g56_B MGC81050 protein; prote 100.0 3.1E-39 1.1E-43 352.2 36.1 293 354-674 40-344 (357)
24 1r5m_A SIR4-interacting protei 100.0 1.7E-38 5.9E-43 357.3 42.7 308 347-674 36-362 (425)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-38 1.2E-42 342.8 42.5 302 348-675 6-337 (345)
26 4gqb_B Methylosome protein 50; 100.0 1.1E-38 3.8E-43 344.6 37.9 297 355-674 29-332 (344)
27 2ynn_A Coatomer subunit beta'; 100.0 3.5E-38 1.2E-42 336.2 40.9 288 543-953 5-298 (304)
28 1r5m_A SIR4-interacting protei 100.0 4.2E-38 1.4E-42 354.2 41.7 348 415-915 42-424 (425)
29 2pbi_B Guanine nucleotide-bind 100.0 1.4E-37 4.6E-42 339.1 43.4 287 414-804 60-354 (354)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.1E-38 2.4E-42 340.3 40.9 212 414-673 11-225 (345)
31 3iz6_a 40S ribosomal protein R 100.0 2.1E-38 7.1E-43 349.6 34.9 295 414-807 62-375 (380)
32 4ery_A WD repeat-containing pr 100.0 5.9E-37 2E-41 328.8 45.2 291 349-672 15-311 (312)
33 2pm9_A Protein WEB1, protein t 100.0 5E-39 1.7E-43 360.7 28.5 298 353-674 9-338 (416)
34 3frx_A Guanine nucleotide-bind 100.0 9.2E-37 3.2E-41 327.5 44.7 296 414-807 13-317 (319)
35 1erj_A Transcriptional repress 100.0 3.6E-37 1.2E-41 341.4 42.4 309 348-673 56-389 (393)
36 4gqb_B Methylosome protein 50; 100.0 2E-37 6.8E-42 334.8 37.8 281 323-631 31-333 (344)
37 1gxr_A ESG1, transducin-like e 100.0 2E-36 6.9E-41 328.7 45.0 319 322-671 9-335 (337)
38 2hes_X YDR267CP; beta-propelle 100.0 9.1E-37 3.1E-41 329.3 41.1 298 348-673 5-328 (330)
39 1gxr_A ESG1, transducin-like e 100.0 8.9E-37 3E-41 331.5 41.3 286 355-674 8-297 (337)
40 4g56_B MGC81050 protein; prote 100.0 9.4E-38 3.2E-42 340.5 33.1 318 361-807 10-343 (357)
41 4ery_A WD repeat-containing pr 100.0 3E-36 1E-40 323.3 44.3 256 414-681 19-275 (312)
42 2xzm_R RACK1; ribosome, transl 100.0 1.2E-36 4.1E-41 330.7 39.9 299 349-674 13-341 (343)
43 4aow_A Guanine nucleotide-bind 100.0 5.7E-36 1.9E-40 325.7 43.9 302 348-675 29-339 (340)
44 3vl1_A 26S proteasome regulato 100.0 9.3E-37 3.2E-41 342.7 34.3 283 358-674 58-366 (420)
45 3gre_A Serine/threonine-protei 100.0 5.7E-37 2E-41 346.2 31.9 355 415-953 60-435 (437)
46 2xzm_R RACK1; ribosome, transl 100.0 2E-35 6.7E-40 321.1 41.8 204 457-673 15-244 (343)
47 2pm9_A Protein WEB1, protein t 100.0 3E-37 1E-41 346.2 27.4 325 323-674 13-415 (416)
48 1erj_A Transcriptional repress 100.0 8E-35 2.7E-39 322.5 44.3 252 416-684 62-351 (393)
49 3vl1_A 26S proteasome regulato 100.0 9.5E-36 3.2E-40 334.4 37.1 347 419-916 57-419 (420)
50 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-36 3.8E-41 345.4 28.4 350 417-916 132-517 (524)
51 2j04_B YDR362CP, TAU91; beta p 100.0 2E-36 6.7E-41 343.3 29.6 275 346-673 123-428 (524)
52 3dm0_A Maltose-binding peripla 100.0 4.6E-35 1.6E-39 350.4 42.4 293 354-672 380-692 (694)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-34 1.1E-38 324.1 45.7 319 414-916 114-442 (445)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-34 2.5E-38 321.3 48.0 322 353-807 115-442 (445)
55 2hes_X YDR267CP; beta-propelle 100.0 1.3E-34 4.4E-39 312.5 39.7 247 414-674 10-281 (330)
56 3ei3_B DNA damage-binding prot 100.0 5.5E-35 1.9E-39 323.6 37.8 296 348-673 64-382 (383)
57 3v7d_B Cell division control p 100.0 4.7E-34 1.6E-38 325.1 46.2 319 414-913 117-460 (464)
58 3gre_A Serine/threonine-protei 100.0 1.6E-35 5.5E-40 334.3 33.5 385 330-913 35-437 (437)
59 4aow_A Guanine nucleotide-bind 100.0 7.4E-34 2.5E-38 309.0 44.6 299 414-808 34-338 (340)
60 3zwl_B Eukaryotic translation 100.0 6.5E-34 2.2E-38 313.2 44.5 291 348-674 24-347 (369)
61 1sq9_A Antiviral protein SKI8; 100.0 1.5E-34 5E-39 322.1 38.4 293 350-674 9-396 (397)
62 3v7d_B Cell division control p 100.0 3.6E-33 1.2E-37 317.7 47.4 279 353-674 118-422 (464)
63 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-33 3.9E-38 303.4 40.2 288 347-674 8-297 (313)
64 3k26_A Polycomb protein EED; W 100.0 7E-35 2.4E-39 320.6 30.5 291 354-672 16-365 (366)
65 4e54_B DNA damage-binding prot 100.0 8.3E-35 2.8E-39 327.4 31.0 293 354-674 117-431 (435)
66 3i2n_A WD repeat-containing pr 100.0 2.4E-34 8E-39 315.2 33.7 289 355-674 17-354 (357)
67 1k8k_C P40, ARP2/3 complex 41 100.0 2E-34 6.7E-39 317.9 33.0 291 355-677 7-365 (372)
68 3zwl_B Eukaryotic translation 100.0 5.3E-33 1.8E-37 305.9 43.6 302 413-808 27-347 (369)
69 3ei3_B DNA damage-binding prot 100.0 8.2E-34 2.8E-38 314.2 37.0 301 458-916 68-382 (383)
70 4h5i_A Guanine nucleotide-exch 100.0 6.7E-34 2.3E-38 310.9 33.5 302 354-674 12-344 (365)
71 1sq9_A Antiviral protein SKI8; 100.0 2.5E-33 8.5E-38 312.1 38.2 254 413-682 11-330 (397)
72 3dm0_A Maltose-binding peripla 100.0 3.8E-33 1.3E-37 333.7 41.7 256 414-683 378-641 (694)
73 4aez_A CDC20, WD repeat-contai 100.0 6.8E-33 2.3E-37 308.4 39.9 291 354-677 89-384 (401)
74 1k8k_C P40, ARP2/3 complex 41 100.0 4.9E-33 1.7E-37 306.7 38.2 247 414-673 4-274 (372)
75 4gga_A P55CDC, cell division c 100.0 2.7E-32 9.1E-37 305.5 42.9 282 358-674 107-396 (420)
76 1k32_A Tricorn protease; prote 100.0 3.5E-32 1.2E-36 339.9 47.3 478 347-952 43-631 (1045)
77 3k26_A Polycomb protein EED; W 100.0 5.7E-33 2E-37 305.3 34.9 295 413-806 13-365 (366)
78 2pm7_B Protein transport prote 100.0 8.2E-33 2.8E-37 293.6 34.5 252 414-673 5-285 (297)
79 3dwl_C Actin-related protein 2 100.0 9.1E-35 3.1E-39 321.2 20.1 286 355-671 10-377 (377)
80 4h5i_A Guanine nucleotide-exch 100.0 2.6E-33 8.9E-38 306.2 30.7 282 551-953 14-338 (365)
81 4a11_B DNA excision repair pro 100.0 1.4E-32 4.8E-37 307.2 36.7 360 485-953 21-400 (408)
82 4a11_B DNA excision repair pro 100.0 2.3E-32 8E-37 305.4 38.2 303 354-674 41-366 (408)
83 4e54_B DNA damage-binding prot 100.0 1.4E-33 4.9E-38 317.3 28.5 311 458-920 114-434 (435)
84 2j04_A TAU60, YPL007P, hypothe 100.0 2.9E-34 1E-38 314.3 22.0 315 416-904 13-349 (588)
85 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-33 5.1E-38 308.8 26.6 315 355-796 14-350 (588)
86 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-31 3.7E-36 288.0 40.4 239 414-674 14-256 (313)
87 3i2n_A WD repeat-containing pr 100.0 3.2E-32 1.1E-36 298.2 36.1 252 413-674 13-292 (357)
88 4ggc_A P55CDC, cell division c 100.0 3.4E-31 1.2E-35 284.9 43.1 282 359-674 28-316 (318)
89 3dw8_B Serine/threonine-protei 100.0 2.4E-32 8.3E-37 309.4 34.6 300 353-671 25-444 (447)
90 3dwl_C Actin-related protein 2 100.0 1.4E-33 4.9E-38 311.5 23.2 242 415-672 8-280 (377)
91 2pm7_B Protein transport prote 100.0 8.2E-32 2.8E-36 285.8 34.5 248 354-629 7-285 (297)
92 1k32_A Tricorn protease; prote 100.0 4E-31 1.4E-35 330.3 45.2 428 355-951 13-495 (1045)
93 4aez_A CDC20, WD repeat-contai 100.0 4.8E-31 1.7E-35 293.4 37.6 283 416-807 89-380 (401)
94 3bg1_A Protein SEC13 homolog; 100.0 4.1E-32 1.4E-36 290.9 27.8 251 413-673 8-293 (316)
95 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-31 1E-35 298.7 35.9 273 354-674 131-415 (435)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 6.5E-32 2.2E-36 300.8 29.8 296 358-674 36-343 (402)
97 4gga_A P55CDC, cell division c 100.0 3.5E-31 1.2E-35 296.4 35.5 279 599-953 106-390 (420)
98 3dw8_B Serine/threonine-protei 100.0 4.9E-31 1.7E-35 298.7 37.1 249 416-674 26-374 (447)
99 3mmy_A MRNA export factor; mRN 100.0 4.7E-31 1.6E-35 290.2 34.0 293 345-672 27-345 (368)
100 1yfq_A Cell cycle arrest prote 100.0 2.5E-31 8.7E-36 289.2 31.1 281 354-670 9-321 (342)
101 4ggc_A P55CDC, cell division c 100.0 5E-30 1.7E-34 275.7 38.9 277 553-953 27-310 (318)
102 3f3f_A Nucleoporin SEH1; struc 100.0 2E-30 6.7E-35 282.8 34.5 254 412-674 5-338 (351)
103 3bg1_A Protein SEC13 homolog; 100.0 1.5E-31 5.2E-36 286.5 24.7 249 354-628 11-292 (316)
104 1yfq_A Cell cycle arrest prote 100.0 5.4E-30 1.9E-34 278.7 37.3 254 414-682 7-290 (342)
105 1p22_A F-BOX/WD-repeat protein 100.0 6.9E-30 2.4E-34 287.5 36.7 234 415-674 130-366 (435)
106 3mmy_A MRNA export factor; mRN 100.0 9.8E-30 3.4E-34 279.6 36.8 249 414-674 35-305 (368)
107 3jrp_A Fusion protein of prote 100.0 4.5E-30 1.5E-34 283.7 33.6 253 414-674 7-288 (379)
108 3f3f_A Nucleoporin SEH1; struc 100.0 8.1E-30 2.8E-34 277.9 33.1 261 354-637 9-345 (351)
109 3jrp_A Fusion protein of prote 100.0 1.1E-29 3.8E-34 280.5 33.2 259 351-635 5-293 (379)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-30 1.7E-34 285.5 29.4 249 419-675 35-301 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.1E-29 2.4E-33 280.4 36.6 303 357-674 5-392 (450)
112 1l0q_A Surface layer protein; 100.0 7.9E-28 2.7E-32 266.9 42.7 280 370-687 3-288 (391)
113 3bws_A Protein LP49; two-domai 100.0 1.8E-27 6.1E-32 268.1 44.2 375 325-806 30-431 (433)
114 2w18_A PALB2, fancn, partner a 100.0 5E-28 1.7E-32 248.6 35.2 290 466-953 42-352 (356)
115 3vu4_A KMHSV2; beta-propeller 100.0 5.8E-28 2E-32 263.0 37.7 240 414-674 15-272 (355)
116 1l0q_A Surface layer protein; 100.0 3.3E-27 1.1E-31 262.0 44.1 333 479-949 4-372 (391)
117 2xyi_A Probable histone-bindin 100.0 3.3E-28 1.1E-32 272.9 35.4 252 414-674 124-411 (430)
118 2xyi_A Probable histone-bindin 100.0 1.3E-28 4.5E-33 276.1 31.2 266 349-630 121-411 (430)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-28 1E-32 275.2 33.7 276 552-947 5-374 (450)
120 3bws_A Protein LP49; two-domai 100.0 1.7E-27 6E-32 268.2 39.4 295 348-673 114-432 (433)
121 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-28 6.5E-33 266.8 30.3 277 354-674 17-337 (355)
122 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-28 5.3E-33 266.8 26.8 274 471-953 44-328 (343)
123 3jro_A Fusion protein of prote 100.0 1.4E-28 4.9E-33 295.4 28.6 253 414-674 5-286 (753)
124 4gq1_A NUP37; propeller, trans 100.0 2.1E-28 7.1E-33 270.6 27.0 307 353-671 12-387 (393)
125 3jro_A Fusion protein of prote 100.0 2.2E-28 7.4E-33 293.8 26.3 252 354-631 7-287 (753)
126 4gq1_A NUP37; propeller, trans 100.0 9.7E-28 3.3E-32 265.3 28.9 280 553-953 91-385 (393)
127 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-27 3.7E-32 260.1 25.0 269 363-674 43-334 (343)
128 2w18_A PALB2, fancn, partner a 100.0 4.2E-26 1.5E-30 234.3 34.2 295 348-671 26-355 (356)
129 1nir_A Nitrite reductase; hemo 100.0 1.1E-25 3.8E-30 257.6 41.5 345 471-941 145-533 (543)
130 1nir_A Nitrite reductase; hemo 100.0 2.3E-25 7.8E-30 255.0 39.9 277 363-675 144-460 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.3E-25 1.8E-29 244.6 30.6 306 508-940 63-410 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-24 3.5E-29 242.3 29.3 302 357-694 63-406 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 7.2E-24 2.4E-28 256.2 37.3 299 356-673 36-413 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-23 4E-28 254.3 34.8 329 463-917 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-23 4.4E-28 253.3 27.6 287 358-673 18-393 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-23 1.1E-27 250.0 30.0 367 419-920 17-447 (723)
137 3u4y_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 213.2 37.2 281 362-674 3-305 (331)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-22 8.3E-27 241.2 36.8 358 420-913 27-473 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-22 4.9E-27 243.2 31.9 323 466-918 28-437 (706)
140 3vgz_A Uncharacterized protein 99.9 4.9E-21 1.7E-25 208.7 36.6 279 351-664 35-335 (353)
141 1ri6_A Putative isomerase YBHE 99.9 9E-21 3.1E-25 205.7 35.3 307 523-941 7-336 (343)
142 2ojh_A Uncharacterized protein 99.9 1.8E-21 6.3E-26 206.1 27.9 254 575-949 20-293 (297)
143 1ri6_A Putative isomerase YBHE 99.9 2.8E-20 9.5E-25 201.8 37.7 274 369-672 5-307 (343)
144 1pby_B Quinohemoprotein amine 99.9 3.3E-21 1.1E-25 208.6 29.9 303 522-928 2-322 (337)
145 3u4y_A Uncharacterized protein 99.9 3.9E-20 1.3E-24 199.5 36.1 297 522-939 11-326 (331)
146 3vgz_A Uncharacterized protein 99.9 1.2E-19 4.1E-24 197.7 38.5 243 417-674 39-304 (353)
147 2ojh_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 203.8 25.2 257 374-664 17-293 (297)
148 1pby_B Quinohemoprotein amine 99.9 2.9E-20 9.9E-25 201.1 31.9 278 371-683 3-319 (337)
149 3o4h_A Acylamino-acid-releasin 99.9 4.5E-20 1.6E-24 215.7 27.9 273 356-672 21-314 (582)
150 1z68_A Fibroblast activation p 99.9 1.7E-20 5.9E-25 225.5 24.1 278 361-673 20-391 (719)
151 1jmx_B Amine dehydrogenase; ox 99.8 5.7E-19 2E-23 192.0 31.3 293 520-926 10-335 (349)
152 3o4h_A Acylamino-acid-releasin 99.8 1.7E-19 5.7E-24 210.9 28.5 237 417-671 20-274 (582)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 4E-19 1.4E-23 197.6 29.6 259 356-627 36-331 (434)
154 1z68_A Fibroblast activation p 99.8 4.6E-20 1.6E-24 221.8 23.7 322 327-681 20-450 (719)
155 3hfq_A Uncharacterized protein 99.8 8.6E-18 2.9E-22 182.4 38.7 245 417-672 38-316 (347)
156 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-18 5.1E-23 208.4 35.0 274 358-674 18-354 (740)
157 3hfq_A Uncharacterized protein 99.8 3.1E-18 1.1E-22 185.9 32.7 272 336-633 17-323 (347)
158 3pe7_A Oligogalacturonate lyas 99.8 2.8E-18 9.4E-23 189.7 31.5 298 348-672 21-381 (388)
159 3scy_A Hypothetical bacterial 99.8 1.3E-17 4.5E-22 182.1 35.7 306 522-936 14-360 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-17 4.8E-22 199.9 38.9 235 418-674 16-295 (740)
161 1jmx_B Amine dehydrogenase; ox 99.8 5.9E-18 2E-22 183.9 32.1 270 329-639 6-335 (349)
162 2oiz_A Aromatic amine dehydrog 99.8 2.3E-17 7.7E-22 179.0 33.9 310 522-940 16-360 (361)
163 3pe7_A Oligogalacturonate lyas 99.8 4.6E-18 1.6E-22 187.9 28.6 254 414-674 26-330 (388)
164 3scy_A Hypothetical bacterial 99.8 7.7E-17 2.6E-21 176.0 37.5 272 371-672 15-336 (361)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 1.5E-17 5.3E-22 184.8 29.0 231 325-571 39-321 (434)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.3E-17 1.8E-21 177.2 32.0 247 418-674 39-342 (365)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.8E-17 2.7E-21 175.9 30.6 277 565-953 4-336 (365)
168 3c5m_A Oligogalacturonate lyas 99.8 1.2E-16 4E-21 177.1 29.3 281 359-671 38-380 (396)
169 2oiz_A Aromatic amine dehydrog 99.7 6.6E-16 2.2E-20 167.5 30.8 262 377-674 29-335 (361)
170 3c5m_A Oligogalacturonate lyas 99.7 1.1E-16 3.9E-21 177.1 23.2 309 536-950 15-374 (396)
171 3azo_A Aminopeptidase; POP fam 99.7 3.5E-15 1.2E-19 177.4 32.2 254 412-672 17-322 (662)
172 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-13 6.6E-18 155.4 44.6 274 370-674 168-478 (567)
173 2gop_A Trilobed protease; beta 99.7 8.5E-15 2.9E-19 158.7 31.1 274 356-685 14-340 (347)
174 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-13 1E-17 153.9 44.3 332 478-925 168-547 (567)
175 3azo_A Aminopeptidase; POP fam 99.7 6.2E-15 2.1E-19 175.2 28.7 286 354-674 21-370 (662)
176 2gop_A Trilobed protease; beta 99.7 1.6E-13 5.6E-18 148.6 35.0 258 530-930 42-343 (347)
177 3fvz_A Peptidyl-glycine alpha- 99.7 3.1E-14 1.1E-18 152.5 28.9 245 357-629 24-322 (329)
178 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-13 4.2E-18 144.9 32.2 246 415-674 26-281 (286)
179 3fvz_A Peptidyl-glycine alpha- 99.6 5.2E-14 1.8E-18 150.8 28.9 245 418-673 23-322 (329)
180 2xdw_A Prolyl endopeptidase; a 99.6 1.2E-13 4E-18 165.0 34.9 250 415-675 121-416 (710)
181 1q7f_A NHL, brain tumor CG1071 99.6 4E-13 1.4E-17 140.9 33.8 245 356-630 29-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 8.7E-14 3E-18 149.7 29.0 273 357-664 6-301 (333)
183 3e5z_A Putative gluconolactona 99.6 1E-13 3.5E-18 146.3 28.4 241 591-954 21-283 (296)
184 3dsm_A Uncharacterized protein 99.6 5.5E-13 1.9E-17 142.5 30.5 276 378-682 16-309 (328)
185 2z2n_A Virginiamycin B lyase; 99.6 7.6E-12 2.6E-16 132.0 38.6 275 551-953 14-291 (299)
186 2xdw_A Prolyl endopeptidase; a 99.6 4E-13 1.4E-17 160.4 31.6 247 357-631 125-416 (710)
187 2z2n_A Virginiamycin B lyase; 99.6 1E-11 3.5E-16 131.1 38.5 282 355-674 13-296 (299)
188 2dg1_A DRP35, lactonase; beta 99.6 1.9E-12 6.5E-17 139.2 32.8 265 324-619 7-300 (333)
189 3sjl_D Methylamine dehydrogena 99.6 1.5E-12 5.2E-17 138.0 30.6 311 517-938 40-384 (386)
190 2bkl_A Prolyl endopeptidase; m 99.6 2.4E-13 8.2E-18 161.8 27.4 249 415-675 117-399 (695)
191 3e5z_A Putative gluconolactona 99.6 9.1E-13 3.1E-17 138.9 28.1 237 415-674 24-287 (296)
192 2mad_H Methylamine dehydrogena 99.6 1.7E-11 5.8E-16 132.6 37.8 279 364-680 28-356 (373)
193 4a2l_A BT_4663, two-component 99.6 9.4E-10 3.2E-14 133.0 57.3 514 323-953 43-610 (795)
194 3no2_A Uncharacterized protein 99.5 2.3E-12 8E-17 133.2 28.2 243 371-649 7-272 (276)
195 3dsm_A Uncharacterized protein 99.5 4.2E-12 1.4E-16 135.6 31.1 276 530-935 16-319 (328)
196 2mad_H Methylamine dehydrogena 99.5 6E-11 2E-15 128.3 38.8 294 519-923 30-357 (373)
197 1rwi_B Serine/threonine-protei 99.5 1.9E-12 6.6E-17 134.4 25.7 241 358-632 25-267 (270)
198 3sjl_D Methylamine dehydrogena 99.5 5.8E-12 2E-16 133.6 28.0 284 362-683 38-372 (386)
199 1yr2_A Prolyl oligopeptidase; 99.5 2.1E-12 7.1E-17 154.8 27.6 247 416-674 160-442 (741)
200 2qc5_A Streptogramin B lactona 99.5 1.1E-10 3.9E-15 123.0 37.6 280 355-672 18-299 (300)
201 2bkl_A Prolyl endopeptidase; m 99.5 1.3E-12 4.3E-17 155.6 24.2 248 355-632 119-400 (695)
202 1rwi_B Serine/threonine-protei 99.5 4.7E-12 1.6E-16 131.4 24.7 239 420-674 25-265 (270)
203 4a2l_A BT_4663, two-component 99.5 7E-09 2.4E-13 125.3 54.5 484 359-954 133-656 (795)
204 2qc5_A Streptogramin B lactona 99.5 2.4E-10 8E-15 120.5 36.5 275 551-953 19-296 (300)
205 3no2_A Uncharacterized protein 99.5 1.7E-11 6E-16 126.6 26.8 239 429-685 4-263 (276)
206 3c75_H MADH, methylamine dehyd 99.5 3.4E-11 1.2E-15 130.4 29.3 295 519-923 82-409 (426)
207 3c75_H MADH, methylamine dehyd 99.5 1.8E-11 6.3E-16 132.5 27.1 279 366-681 82-409 (426)
208 1yr2_A Prolyl oligopeptidase; 99.4 9.6E-12 3.3E-16 149.0 26.7 244 358-631 164-443 (741)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.1E-10 3.7E-15 124.1 28.5 243 418-673 17-299 (314)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2E-10 7E-15 122.0 28.7 245 356-629 17-299 (314)
211 3v9f_A Two-component system se 99.4 3.3E-07 1.1E-11 110.3 59.5 488 357-954 115-653 (781)
212 3v9f_A Two-component system se 99.4 3.6E-07 1.2E-11 110.1 59.4 484 323-953 19-564 (781)
213 3g4e_A Regucalcin; six bladed 99.4 8.2E-10 2.8E-14 116.0 31.7 227 600-946 14-260 (297)
214 1yiq_A Quinohemoprotein alcoho 99.3 2.3E-10 7.9E-15 134.3 28.4 333 522-947 71-538 (689)
215 3iuj_A Prolyl endopeptidase; h 99.3 3.6E-10 1.2E-14 134.0 30.3 251 355-633 127-409 (693)
216 2qe8_A Uncharacterized protein 99.3 2.6E-10 8.8E-15 122.6 26.1 266 552-951 17-314 (343)
217 2qe8_A Uncharacterized protein 99.3 1.4E-10 4.8E-15 124.7 22.3 274 357-667 17-315 (343)
218 3hrp_A Uncharacterized protein 99.3 1.2E-09 4E-14 120.0 29.9 240 357-627 131-408 (409)
219 3hrp_A Uncharacterized protein 99.3 1.6E-09 5.5E-14 118.8 30.7 239 419-671 131-408 (409)
220 3g4e_A Regucalcin; six bladed 99.3 6.7E-10 2.3E-14 116.7 26.5 227 358-618 14-261 (297)
221 1kb0_A Quinohemoprotein alcoho 99.3 1.5E-09 5.3E-14 127.0 32.2 195 479-680 79-352 (677)
222 1mda_H Methylamine dehydrogena 99.3 1.1E-09 3.7E-14 116.8 27.1 283 578-937 47-366 (368)
223 3dr2_A Exported gluconolactona 99.3 9.8E-10 3.4E-14 116.0 25.9 231 354-621 42-299 (305)
224 3iuj_A Prolyl endopeptidase; h 99.3 3.4E-10 1.1E-14 134.2 23.8 245 415-674 125-406 (693)
225 1xip_A Nucleoporin NUP159; bet 99.2 1.8E-10 6E-15 122.9 19.0 183 358-570 39-232 (388)
226 1mda_H Methylamine dehydrogena 99.2 4.7E-10 1.6E-14 119.6 22.0 269 370-683 33-355 (368)
227 2ghs_A AGR_C_1268P; regucalcin 99.2 4.1E-09 1.4E-13 112.2 28.7 222 359-617 51-290 (326)
228 1yiq_A Quinohemoprotein alcoho 99.2 8.3E-09 2.8E-13 121.1 33.1 363 479-905 72-538 (689)
229 2ghs_A AGR_C_1268P; regucalcin 99.2 7.6E-09 2.6E-13 110.1 29.2 222 421-663 51-292 (326)
230 1xip_A Nucleoporin NUP159; bet 99.2 6.7E-10 2.3E-14 118.5 19.2 176 419-617 38-232 (388)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5.5E-08 1.9E-12 106.1 35.1 186 479-675 55-260 (376)
232 3s94_A LRP-6, low-density lipo 99.2 9E-06 3.1E-10 93.5 53.6 467 438-946 16-497 (619)
233 3dr2_A Exported gluconolactona 99.2 1.1E-08 3.9E-13 107.7 27.2 233 417-667 43-301 (305)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 8.2E-08 2.8E-12 104.7 34.1 276 371-681 55-344 (376)
235 1kb0_A Quinohemoprotein alcoho 99.1 3.9E-08 1.3E-12 115.2 32.6 285 371-682 79-515 (677)
236 4a0p_A LRP6, LRP-6, low-densit 99.1 5.6E-05 1.9E-09 87.0 57.0 474 432-946 8-495 (628)
237 1fwx_A Nitrous oxide reductase 99.1 3.1E-09 1.1E-13 117.3 20.5 259 561-947 99-407 (595)
238 3hxj_A Pyrrolo-quinoline quino 99.1 5.2E-09 1.8E-13 111.9 21.4 301 468-916 24-324 (330)
239 3hxj_A Pyrrolo-quinoline quino 99.1 8.9E-09 3E-13 110.1 22.0 261 361-674 24-284 (330)
240 2ece_A 462AA long hypothetical 99.0 1.3E-07 4.3E-12 100.7 29.1 239 561-904 93-399 (462)
241 2ece_A 462AA long hypothetical 99.0 9.1E-08 3.1E-12 101.8 27.9 262 336-617 44-399 (462)
242 3s94_A LRP-6, low-density lipo 99.0 4.3E-05 1.5E-09 87.9 51.5 460 353-918 36-553 (619)
243 1kv9_A Type II quinohemoprotei 99.0 1.3E-07 4.5E-12 110.6 29.7 82 863-946 437-520 (668)
244 2hz6_A Endoplasmic reticulum t 99.0 3.2E-10 1.1E-14 122.8 6.0 190 429-638 8-201 (369)
245 1npe_A Nidogen, entactin; glyc 98.9 5.8E-06 2E-10 84.9 36.0 223 419-655 36-263 (267)
246 2ad6_A Methanol dehydrogenase 98.9 4.2E-06 1.4E-10 95.7 36.8 372 480-943 65-522 (571)
247 1npe_A Nidogen, entactin; glyc 98.9 1.1E-05 3.6E-10 82.9 34.6 243 430-682 1-246 (267)
248 1fwx_A Nitrous oxide reductase 98.8 6.8E-07 2.3E-11 98.8 25.9 234 433-673 18-361 (595)
249 4a0p_A LRP6, LRP-6, low-densit 98.8 0.00057 2E-08 78.6 55.6 203 355-588 35-239 (628)
250 1flg_A Protein (quinoprotein e 98.8 1.8E-05 6.2E-10 90.4 38.0 377 480-945 71-547 (582)
251 2hz6_A Endoplasmic reticulum t 98.8 1.9E-09 6.4E-14 116.8 4.4 180 479-676 11-195 (369)
252 1kv9_A Type II quinohemoprotei 98.8 3.4E-06 1.2E-10 98.6 31.7 197 479-680 68-339 (668)
253 1w6s_A Methanol dehydrogenase 98.8 1.3E-05 4.5E-10 91.3 35.4 382 479-946 64-535 (599)
254 2iwa_A Glutamine cyclotransfer 98.6 7.2E-06 2.5E-10 82.1 24.5 205 347-585 9-236 (266)
255 3nol_A Glutamine cyclotransfer 98.6 6.3E-06 2.1E-10 81.3 23.0 192 347-571 31-244 (262)
256 2iwa_A Glutamine cyclotransfer 98.6 7.5E-06 2.6E-10 82.0 24.0 197 420-630 22-238 (266)
257 2ad6_A Methanol dehydrogenase 98.6 2E-05 6.9E-10 90.0 30.9 233 430-671 62-414 (571)
258 1flg_A Protein (quinoprotein e 98.6 0.00025 8.6E-09 81.0 39.2 205 430-639 68-365 (582)
259 2xe4_A Oligopeptidase B; hydro 98.6 9.1E-06 3.1E-10 96.7 27.6 248 358-632 175-461 (751)
260 3nol_A Glutamine cyclotransfer 98.6 7.3E-06 2.5E-10 80.8 21.5 184 466-662 45-244 (262)
261 3ei3_A DNA damage-binding prot 98.6 0.0041 1.4E-07 76.5 50.2 446 419-953 514-994 (1158)
262 1w6s_A Methanol dehydrogenase 98.5 2.9E-05 1E-09 88.5 28.8 289 371-682 64-511 (599)
263 3ei3_A DNA damage-binding prot 98.5 0.0046 1.6E-07 76.1 50.0 292 355-674 552-914 (1158)
264 1k3i_A Galactose oxidase precu 98.5 5.4E-06 1.9E-10 97.2 23.3 280 360-662 189-530 (656)
265 3v64_C Agrin; beta propeller, 98.5 0.0006 2E-08 72.5 36.3 247 358-637 35-283 (349)
266 2fp8_A Strictosidine synthase; 98.5 5.2E-05 1.8E-09 80.2 28.0 256 358-629 20-313 (322)
267 2p4o_A Hypothetical protein; p 98.5 9.9E-05 3.4E-09 77.3 29.4 239 345-619 20-278 (306)
268 2fp8_A Strictosidine synthase; 98.5 2.6E-05 8.8E-10 82.5 24.8 240 419-673 19-313 (322)
269 3nok_A Glutaminyl cyclase; bet 98.5 2.2E-05 7.5E-10 77.3 21.5 182 419-617 55-253 (268)
270 3v65_B Low-density lipoprotein 98.5 0.00049 1.7E-08 74.4 34.7 247 359-638 79-327 (386)
271 2p4o_A Hypothetical protein; p 98.4 5E-05 1.7E-09 79.5 26.0 228 419-663 32-278 (306)
272 3nok_A Glutaminyl cyclase; bet 98.4 3E-05 1E-09 76.4 22.1 179 466-661 57-253 (268)
273 3mbr_X Glutamine cyclotransfer 98.4 8.1E-05 2.8E-09 72.8 24.7 184 464-661 21-222 (243)
274 1ijq_A LDL receptor, low-densi 98.4 0.00081 2.8E-08 70.5 34.7 232 432-674 3-239 (316)
275 3v64_C Agrin; beta propeller, 98.4 0.00068 2.3E-08 72.1 33.5 242 419-674 34-276 (349)
276 3v65_B Low-density lipoprotein 98.4 0.00053 1.8E-08 74.1 32.7 240 421-674 79-319 (386)
277 3mbr_X Glutamine cyclotransfer 98.4 8.4E-05 2.9E-09 72.7 23.0 185 418-618 20-223 (243)
278 3p5b_L Low density lipoprotein 98.4 0.0014 4.7E-08 71.2 35.2 232 432-674 85-321 (400)
279 1ijq_A LDL receptor, low-densi 98.3 0.003 1E-07 66.0 35.5 232 378-637 9-246 (316)
280 1k3i_A Galactose oxidase precu 98.3 5.8E-05 2E-09 88.4 23.7 233 423-663 190-476 (656)
281 2xbg_A YCF48-like protein; pho 98.3 0.0052 1.8E-07 64.6 36.5 282 354-670 33-319 (327)
282 3ott_A Two-component system se 98.3 0.02 6.9E-07 68.2 53.0 449 356-954 145-623 (758)
283 3qqz_A Putative uncharacterize 98.2 0.001 3.4E-08 66.2 28.0 191 356-568 26-240 (255)
284 3ott_A Two-component system se 98.2 0.023 8E-07 67.6 53.0 447 356-954 62-542 (758)
285 2xe4_A Oligopeptidase B; hydro 98.2 0.00026 9E-09 84.1 25.9 244 416-674 170-459 (751)
286 3p5b_L Low density lipoprotein 98.1 0.0083 2.8E-07 65.0 34.2 234 378-637 91-328 (400)
287 3sov_A LRP-6, low-density lipo 98.1 0.0053 1.8E-07 64.0 31.4 227 438-674 11-239 (318)
288 3qqz_A Putative uncharacterize 98.1 0.0035 1.2E-07 62.2 27.6 202 414-627 22-251 (255)
289 3sov_A LRP-6, low-density lipo 98.1 0.011 3.8E-07 61.6 32.9 209 419-637 35-246 (318)
290 2xzh_A Clathrin heavy chain 1; 98.0 0.01 3.4E-07 59.8 29.9 100 576-685 48-147 (365)
291 3m0c_C LDL receptor, low-densi 98.0 0.0086 2.9E-07 70.4 34.7 232 432-674 397-633 (791)
292 2xbg_A YCF48-like protein; pho 98.0 0.0053 1.8E-07 64.5 30.1 107 842-952 203-316 (327)
293 3tc9_A Hypothetical hydrolase; 98.0 0.0021 7.3E-08 70.4 26.4 242 419-672 137-429 (430)
294 3tc9_A Hypothetical hydrolase; 97.9 0.0046 1.6E-07 67.7 28.5 155 358-540 138-301 (430)
295 3m0c_C LDL receptor, low-densi 97.9 0.016 5.4E-07 68.2 34.3 212 418-637 423-640 (791)
296 4hw6_A Hypothetical protein, I 97.9 0.0029 9.8E-08 69.3 26.3 241 419-672 139-432 (433)
297 4hw6_A Hypothetical protein, I 97.9 0.0047 1.6E-07 67.6 27.6 237 358-628 140-432 (433)
298 1bpo_A Protein (clathrin); cla 97.9 0.037 1.3E-06 58.1 31.9 250 576-949 47-322 (494)
299 2xtc_A F-box-like/WD repeat-co 97.9 1.1E-05 3.8E-10 63.0 4.3 36 1-36 1-36 (90)
300 3kya_A Putative phosphatase; s 97.8 0.0091 3.1E-07 65.4 28.2 246 420-674 140-476 (496)
301 3amr_A 3-phytase; beta-propell 97.7 0.011 3.8E-07 60.9 25.1 195 479-682 42-272 (355)
302 3kya_A Putative phosphatase; s 97.7 0.019 6.3E-07 62.9 27.8 250 358-633 140-479 (496)
303 3amr_A 3-phytase; beta-propell 97.7 0.011 3.6E-07 61.1 23.8 198 429-638 39-273 (355)
304 1n7d_A LDL receptor, low-densi 97.7 0.00027 9.2E-09 82.7 13.7 232 439-681 385-621 (699)
305 1n7d_A LDL receptor, low-densi 97.6 0.00055 1.9E-08 80.1 14.9 211 419-638 406-623 (699)
306 3a9g_A Putative uncharacterize 97.5 0.14 4.7E-06 54.2 30.2 61 885-946 259-330 (354)
307 2xzh_A Clathrin heavy chain 1; 97.3 0.16 5.6E-06 51.2 33.4 237 361-630 71-333 (365)
308 2vpj_A Kelch-like protein 12; 97.3 0.018 6.2E-07 59.6 21.2 195 428-632 61-281 (301)
309 2ism_A Putative oxidoreductase 97.3 0.13 4.4E-06 54.4 27.9 60 885-946 268-333 (352)
310 2p9w_A MAL S 1 allergenic prot 97.3 0.062 2.1E-06 54.9 23.4 162 360-541 16-216 (334)
311 2vpj_A Kelch-like protein 12; 97.3 0.018 6.3E-07 59.6 20.4 233 429-674 14-279 (301)
312 3ii7_A Kelch-like protein 7; p 97.2 0.067 2.3E-06 55.4 24.5 236 369-634 12-277 (306)
313 2ism_A Putative oxidoreductase 97.2 0.046 1.6E-06 57.9 23.2 230 419-661 31-333 (352)
314 3das_A Putative oxidoreductase 97.2 0.3 1E-05 50.8 31.6 100 845-946 203-326 (347)
315 2xn4_A Kelch-like protein 2; s 97.2 0.026 8.7E-07 58.5 20.2 232 430-674 16-277 (302)
316 3ii7_A Kelch-like protein 7; p 97.1 0.034 1.2E-06 57.7 20.9 231 431-674 13-273 (306)
317 3a9g_A Putative uncharacterize 97.0 0.21 7.3E-06 52.7 26.2 233 419-661 29-330 (354)
318 2g8s_A Glucose/sorbosone dehyd 97.0 0.28 9.7E-06 51.7 26.9 236 419-660 18-340 (353)
319 3sbq_A Nitrous-oxide reductase 96.9 0.18 6.2E-06 54.7 23.5 100 844-946 323-453 (638)
320 2xn4_A Kelch-like protein 2; s 96.9 0.055 1.9E-06 55.9 19.6 193 429-632 61-279 (302)
321 4asc_A Kelch repeat and BTB do 96.8 0.36 1.2E-05 50.0 25.8 234 371-635 7-283 (315)
322 1bpo_A Protein (clathrin); cla 96.8 0.7 2.4E-05 48.7 34.7 237 361-630 70-332 (494)
323 4asc_A Kelch repeat and BTB do 96.7 0.092 3.1E-06 54.6 20.1 224 440-674 13-278 (315)
324 1zgk_A Kelch-like ECH-associat 96.6 0.079 2.7E-06 54.9 18.8 234 428-674 23-288 (308)
325 3sre_A PON1, serum paraoxonase 96.6 0.42 1.4E-05 49.9 23.2 189 466-663 52-287 (355)
326 1xi4_A Clathrin heavy chain; a 96.6 0.11 3.8E-06 63.1 20.8 96 576-681 47-142 (1630)
327 1zgk_A Kelch-like ECH-associat 96.5 0.22 7.6E-06 51.5 21.2 195 429-634 70-292 (308)
328 2p9w_A MAL S 1 allergenic prot 96.5 0.93 3.2E-05 46.3 28.1 165 459-630 8-216 (334)
329 3sre_A PON1, serum paraoxonase 96.5 1.1 3.6E-05 46.9 31.0 208 419-637 50-308 (355)
330 3pbp_A Nucleoporin NUP82; beta 96.4 0.14 4.8E-06 53.9 18.2 107 844-951 66-205 (452)
331 2woz_A Kelch repeat and BTB do 96.4 0.24 8.3E-06 51.4 20.6 222 441-674 25-288 (318)
332 2woz_A Kelch repeat and BTB do 96.3 0.56 1.9E-05 48.6 22.8 233 371-635 18-293 (318)
333 2g8s_A Glucose/sorbosone dehyd 96.2 1.5 5.2E-05 46.0 26.1 106 357-476 18-142 (353)
334 3pbp_A Nucleoporin NUP82; beta 96.1 0.14 4.6E-06 54.0 15.9 127 357-493 66-209 (452)
335 2uvk_A YJHT; unknown function, 96.0 0.2 6.8E-06 53.1 17.7 147 487-639 168-352 (357)
336 2uvk_A YJHT; unknown function, 95.8 0.25 8.7E-06 52.3 17.6 238 429-674 19-343 (357)
337 1cru_A Protein (soluble quinop 95.4 4 0.00014 44.4 29.4 54 600-653 28-87 (454)
338 1uuj_A Platelet-activating fac 95.3 0.013 4.6E-07 45.4 3.7 54 5-58 10-65 (88)
339 3s25_A Hypothetical 7-bladed b 95.2 3.1 0.00011 42.4 25.1 180 361-586 57-255 (302)
340 2be1_A Serine/threonine-protei 94.9 0.1 3.5E-06 54.0 10.1 192 479-677 12-235 (339)
341 1tl2_A L10, protein (tachylect 94.7 0.7 2.4E-05 43.8 14.1 100 846-951 90-203 (236)
342 1xi4_A Clathrin heavy chain; a 94.5 1.4 4.9E-05 53.8 19.4 238 361-631 70-333 (1630)
343 1tl2_A L10, protein (tachylect 93.9 0.18 6.3E-06 47.7 8.5 101 844-951 41-156 (236)
344 2be1_A Serine/threonine-protei 93.9 2.8 9.5E-05 43.3 18.1 115 431-550 11-140 (339)
345 2wg3_C Hedgehog-interacting pr 93.8 9.1 0.00031 41.6 25.1 56 419-474 14-79 (463)
346 3das_A Putative oxidoreductase 93.2 8.9 0.00031 39.7 30.2 113 355-483 30-157 (347)
347 2zwa_A Leucine carboxyl methyl 93.2 2.7 9.2E-05 48.9 18.9 200 428-633 396-639 (695)
348 3s25_A Hypothetical 7-bladed b 92.9 9 0.00031 38.9 29.1 182 423-631 57-257 (302)
349 3sbq_A Nitrous-oxide reductase 92.9 13 0.00044 40.6 24.0 234 433-673 73-408 (638)
350 3qhy_B Beta-lactamase inhibito 92.4 5.8 0.0002 39.9 17.8 222 357-629 24-246 (282)
351 2zwa_A Leucine carboxyl methyl 91.5 5.8 0.0002 46.0 18.9 193 479-674 400-636 (695)
352 2wg3_C Hedgehog-interacting pr 90.7 21 0.00072 38.7 29.2 54 600-653 15-79 (463)
353 2nxp_A Transcription initiatio 89.4 1.7 5.9E-05 38.9 9.2 63 72-134 52-114 (156)
354 1cru_A Protein (soluble quinop 89.1 28 0.00095 37.7 32.4 113 356-483 26-162 (454)
355 2j4b_A TAF5, transcription ini 88.9 1.3 4.5E-05 38.6 7.8 57 72-129 33-89 (138)
356 4hvt_A Ritya.17583.B, post-pro 88.8 39 0.0013 38.9 26.4 241 361-628 133-429 (711)
357 4hvt_A Ritya.17583.B, post-pro 88.7 38 0.0013 39.0 22.2 242 423-672 133-429 (711)
358 3qhy_B Beta-lactamase inhibito 87.0 23 0.00079 35.4 17.1 221 419-672 24-245 (282)
359 2j49_A Transcription initiatio 84.0 0.88 3E-05 40.2 4.1 60 67-128 31-90 (148)
360 3q6k_A 43.2 kDa salivary prote 77.2 74 0.0025 33.2 22.0 167 488-659 124-340 (381)
361 2wpv_A GET4, UPF0363 protein Y 72.8 21 0.00072 36.0 10.7 111 38-187 17-128 (312)
362 3b7f_A Glycosyl hydrolase, BNR 71.9 1E+02 0.0035 32.3 29.9 238 418-667 54-366 (394)
363 4gq2_M Nucleoporin NUP120; bet 69.1 42 0.0014 40.3 14.2 37 886-923 237-273 (950)
364 3uc1_A DNA gyrase subunit A; D 63.9 1.3E+02 0.0045 30.6 17.5 107 843-952 94-222 (327)
365 3no0_A DNA gyrase subunit A; D 61.1 1.3E+02 0.0045 29.6 16.6 107 843-952 67-190 (276)
366 3lpz_A GET4 (YOR164C homolog); 59.4 53 0.0018 33.4 10.4 110 38-186 16-129 (336)
367 1wp5_A Topoisomerase IV; broke 58.8 1.6E+02 0.0054 29.9 24.8 194 428-629 3-225 (323)
368 4gq2_M Nucleoporin NUP120; bet 57.1 3.1E+02 0.011 32.7 20.1 38 465-504 237-274 (950)
369 2zux_A YESW protein; beta-prop 56.8 2.3E+02 0.0078 31.1 25.8 180 462-653 177-424 (591)
370 2k9m_A RNA polymerase sigma fa 53.0 19 0.00065 30.9 5.1 90 2-103 18-121 (130)
371 4a9v_A PHOX; hydrolase, beta-p 52.1 43 0.0015 36.9 8.9 61 885-946 476-549 (592)
372 3q6k_A 43.2 kDa salivary prote 50.0 2.4E+02 0.0082 29.3 24.1 174 380-569 124-341 (381)
373 2xtc_A F-box-like/WD repeat-co 49.8 13 0.00045 29.1 3.3 18 166-183 44-61 (90)
374 3zwu_A Alkaline phosphatase PH 49.4 39 0.0013 37.7 8.4 58 845-903 477-548 (592)
375 3zwu_A Alkaline phosphatase PH 47.0 61 0.0021 36.2 9.4 64 553-616 477-548 (592)
376 1zi0_A DNA gyrase subunit A; b 45.9 2.4E+02 0.0083 28.2 27.3 193 428-628 1-225 (307)
377 4gco_A Protein STI-1; structur 45.7 84 0.0029 26.2 8.5 98 14-118 22-124 (126)
378 4a9v_A PHOX; hydrolase, beta-p 45.6 95 0.0033 34.2 10.4 65 553-617 477-549 (592)
379 2zuy_A YESX protein; beta-prop 43.2 3.8E+02 0.013 29.6 24.8 69 585-653 354-428 (620)
380 3mkr_A Coatomer subunit epsilo 43.0 1E+02 0.0036 30.6 10.0 87 4-101 63-157 (291)
381 1sqj_A OXG-RCBH, oligoxylogluc 42.5 4.6E+02 0.016 30.4 26.9 158 356-530 14-190 (789)
382 4fhn_B Nucleoporin NUP120; pro 42.4 75 0.0026 39.2 10.3 37 887-924 240-276 (1139)
383 4gcn_A Protein STI-1; structur 42.3 81 0.0028 26.4 7.8 101 15-117 18-124 (127)
384 3mkr_A Coatomer subunit epsilo 40.7 2E+02 0.0068 28.4 11.7 12 48-59 79-90 (291)
385 3uc1_A DNA gyrase subunit A; D 40.5 3E+02 0.01 27.8 22.3 191 430-628 3-227 (327)
386 2d68_A FOP, FGFR1OP; alpha hel 40.5 25 0.00087 27.0 3.5 29 7-35 20-48 (82)
387 3b7f_A Glycosyl hydrolase, BNR 38.9 3.5E+02 0.012 28.0 25.8 215 430-660 22-296 (394)
388 4asv_A Small glutamine-rich te 38.0 19 0.00065 28.1 2.5 19 1-19 15-33 (92)
389 4fhn_B Nucleoporin NUP120; pro 33.6 1E+02 0.0034 38.1 9.4 38 465-504 239-276 (1139)
390 3f7f_A Nucleoporin NUP120; nuc 33.5 45 0.0015 37.9 5.6 36 886-924 223-258 (729)
391 3f7f_A Nucleoporin NUP120; nuc 32.2 2.2E+02 0.0075 32.4 10.8 30 609-638 230-259 (729)
392 1vk8_A Hypothetical protein TM 32.2 7.3 0.00025 31.8 -0.7 35 25-60 38-72 (106)
393 1kdl_A YOPD protein; yersinia, 32.1 26 0.0009 19.6 1.7 14 5-18 4-17 (26)
394 2lni_A Stress-induced-phosphop 29.7 2.2E+02 0.0076 23.0 9.6 90 7-102 18-112 (133)
395 2k9l_A RNA polymerase sigma fa 27.5 35 0.0012 25.9 2.5 35 2-36 27-62 (76)
396 3gyz_A Chaperone protein IPGC; 27.4 1.8E+02 0.0063 25.2 7.8 17 44-60 46-62 (151)
397 1suu_A DNA gyrase subunit A; t 27.3 4.8E+02 0.016 26.0 27.1 254 520-873 7-283 (312)
398 3qou_A Protein YBBN; thioredox 27.1 3E+02 0.01 26.9 10.4 104 10-120 122-230 (287)
399 3no0_A DNA gyrase subunit A; D 26.3 4.6E+02 0.016 25.6 20.3 115 507-628 67-195 (276)
400 2pl2_A Hypothetical conserved 25.8 3.7E+02 0.013 24.7 10.3 107 8-119 8-128 (217)
401 3l6v_A GYRA, DNA gyrase subuni 25.1 5.8E+02 0.02 26.3 27.1 109 427-540 4-132 (370)
402 2kck_A TPR repeat; tetratricop 23.8 1E+02 0.0035 24.1 5.2 84 15-102 16-105 (112)
403 3gyz_A Chaperone protein IPGC; 23.4 2.5E+02 0.0084 24.4 7.8 17 85-101 115-131 (151)
404 2qfc_A PLCR protein; TPR, HTH, 23.2 3.7E+02 0.013 26.2 10.2 95 7-102 77-183 (293)
405 1elr_A TPR2A-domain of HOP; HO 23.1 2.9E+02 0.0098 22.0 9.2 94 9-102 8-107 (131)
406 4ga2_A E3 SUMO-protein ligase 22.8 3.5E+02 0.012 23.0 11.1 93 21-121 13-111 (150)
407 1sqj_A OXG-RCBH, oligoxylogluc 22.6 9.3E+02 0.032 27.8 26.1 149 418-570 14-188 (789)
408 3qwp_A SET and MYND domain-con 22.2 2.7E+02 0.0093 29.5 9.3 97 6-105 288-402 (429)
409 2ibo_A Hypothetical protein SP 22.1 12 0.00042 30.5 -1.1 33 27-60 27-59 (104)
410 1lxj_A YBL001C, hypothetical 1 22.0 12 0.00042 30.5 -1.1 36 24-60 28-63 (104)
411 4gof_A Small glutamine-rich te 21.9 46 0.0016 23.0 1.9 15 5-19 2-16 (52)
412 1oyi_A Double-stranded RNA-bin 21.5 54 0.0019 25.2 2.4 30 6-37 16-45 (82)
413 2yhc_A BAMD, UPF0169 lipoprote 21.4 2.1E+02 0.007 26.7 7.5 98 5-103 4-125 (225)
414 4gyw_A UDP-N-acetylglucosamine 21.2 5.1E+02 0.017 29.7 11.9 56 5-60 8-69 (723)
415 2zux_A YESW protein; beta-prop 21.1 8.5E+02 0.029 26.7 26.2 312 328-673 154-532 (591)
416 1yqh_A DUF77, IG hypothetical 21.0 14 0.00048 30.4 -1.0 34 26-60 31-64 (109)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-63 Score=580.15 Aligned_cols=522 Identities=23% Similarity=0.346 Sum_probs=439.6
Q ss_pred cCCCCCCcccccccccceeeeeeCCCCCcceeecCCC------CCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCe
Q 002196 308 RSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDD------LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGD 380 (954)
Q Consensus 308 ~~~~~~~~d~v~~~~~~i~~~~~s~~g~~~~~~~~~~------~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~ 380 (954)
+.+..||++.| .+++|||||+++|+.+.|. ...++++++. |.+.|++++|+|||+ +|++|+.|++
T Consensus 9 ~~~L~GH~~~V-------~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~ 80 (577)
T 2ymu_A 9 RNRLEAHSSSV-------RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKT 80 (577)
T ss_dssp EEEECCCSSCE-------EEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred eeEECCCCCcE-------EEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCE
Confidence 34455776654 5899999999999997764 3566777776 999999999999999 7899999999
Q ss_pred EEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCccee------
Q 002196 381 VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR------ 454 (954)
Q Consensus 381 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~------ 454 (954)
|+|||.. ++.+.. +.+|...|.+++|+||+++|++++.|+.+++|+........
T Consensus 81 i~vWd~~-~~~~~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~ 140 (577)
T 2ymu_A 81 VKLWNRN-GQLLQT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 140 (577)
T ss_dssp EEEEETT-SCEEEE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSS
T ss_pred EEEEECC-CCEEEE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCC
Confidence 9999964 454443 67899999999999999999999999999999864321100
Q ss_pred -------------------------------eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 455 -------------------------------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 455 -------------------------------~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
.......|...|.+++|+|+++ ++++++.|+.|++|| .+++.+..+
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~w~-~~~~~~~~~ 217 (577)
T 2ymu_A 141 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWN-RNGQLLQTL 217 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEEC-TTSCEEEEE
T ss_pred ceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCC--EEEEEcCCCEEEEEe-CCCcEEEEE
Confidence 0123446778899999999999 689999999999999 567888999
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
.+|...|.+++|++++ .++++++.|+.|++||.. .+....+..+...|.+++|+|+++.+++++.++. +++||
T Consensus 218 ~~~~~~v~~~~~s~dg--~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~----i~~w~ 290 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT----VKLWN 290 (577)
T ss_dssp ECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEE
T ss_pred ecCCCCEEEEEECCCC--CEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE----EEEEe
Confidence 9999999999998765 789999999999999964 4556667778889999999999999999987554 99999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
. +++....+.+|.. .|.+++|+|+++.+++++.||.|++||... ..+..+..+ ...+.+++|+|++++|++++.|
T Consensus 291 ~-~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 291 R-NGQLLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGH--SSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp T-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCC--SSCEEEEEECTTSSEEEEEETT
T ss_pred C-CCcEEEEEecCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCC--CCCEEEEEECCCCCEEEEEeCC
Confidence 6 5677788888876 899999999999999999999999999865 445556544 5689999999999999999999
Q ss_pred CcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccc
Q 002196 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 743 (954)
Q Consensus 664 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 743 (954)
|.|++|+.. + +.+..+.+|...+..+. +.++++.++
T Consensus 366 g~v~~~~~~-~-~~~~~~~~~~~~v~~~~------------------------------------------~s~dg~~l~ 401 (577)
T 2ymu_A 366 KTVKLWNRN-G-QLLQTLTGHSSSVRGVA------------------------------------------FSPDGQTIA 401 (577)
T ss_dssp SEEEEEETT-C-CEEEEEECCSSCEEEEE------------------------------------------ECTTSSCEE
T ss_pred CEEEEEcCC-C-CEEEEecCCCCCeEEEE------------------------------------------ECCCCCEEE
Confidence 999999964 4 57777888777666542 235678899
Q ss_pred cccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCcc
Q 002196 744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 823 (954)
Q Consensus 744 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~ 823 (954)
+++.|+.|++|+... .....+ .+|...|.+++|+||+++|++++.|+.+++|+...
T Consensus 402 ~~~~d~~v~~~~~~~----~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---------------- 457 (577)
T 2ymu_A 402 SASDDKTVKLWNRNG----QLLQTL----TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---------------- 457 (577)
T ss_dssp EEETTSEEEEECTTC----CEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----------------
T ss_pred EEeCCCEEEEEeCCC----CEEEEe----cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----------------
Confidence 999999999999642 222222 24889999999999999999999999999997431
Q ss_pred ccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEE
Q 002196 824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 902 (954)
Q Consensus 824 l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~las 902 (954)
+.+. .+.+ |...|++++|+||+++||+++ |++|++||. +++++..+.+|...|++++|+| |+++||+
T Consensus 458 -------~~~~-~~~~--~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s 525 (577)
T 2ymu_A 458 -------QLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIAS 525 (577)
T ss_dssp -------CEEE-EEEC--CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred -------CEEE-EEcC--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEE
Confidence 1111 1333 889999999999999999998 999999995 6899999999999999999999 9999999
Q ss_pred EecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 903 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 903 gs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|+.||.|+|||. +++++.++.+|.+.|++++|+|||++|+|+|.|++|+|
T Consensus 526 ~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 526 ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 999999999995 68899999999999999999999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-63 Score=585.44 Aligned_cols=551 Identities=14% Similarity=0.174 Sum_probs=417.2
Q ss_pred ceeeeeeCCCCCcceeecCCCC------CcceEEEe-cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeee
Q 002196 324 NILPVAYTPQSLGQSSYSTDDL------PKTVVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 396 (954)
Q Consensus 324 ~i~~~~~s~~g~~~~~~~~~~~------~~~~~~~~-~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~ 396 (954)
.+.+++|+|+|+++++.+.+.. ......++ +|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~- 97 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT- 97 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE-
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeE-
Confidence 4557899999999988764321 23445555 4999999999999999 8899999999999999765433211
Q ss_pred eEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEe
Q 002196 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472 (954)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s 472 (954)
.+.+|.+.|.+++|+|||++|++++.+ +.|++|| .+.... .+.+|...|.+++|+
T Consensus 98 ----------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 98 ----------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFK 156 (611)
T ss_dssp ----------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEEC
T ss_pred ----------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEEC
Confidence 146799999999999999999999875 4677777 454444 678999999999999
Q ss_pred cCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee----
Q 002196 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---- 548 (954)
Q Consensus 473 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---- 548 (954)
|+++. .|++|+.|++|++||..++++...+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 157 p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 157 PSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp SSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred CCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99874 59999999999999999999999999999999999999865 799999999999999998887766653
Q ss_pred ---CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC--CCeEEEEEeCCCCEEEEEECCCeEE
Q 002196 549 ---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIK 623 (954)
Q Consensus 549 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~ 623 (954)
.|...|.+++|+|+|++|++++.|+ .|++||+.+++.+..+..+.. .....+.| ++..+++++.||.++
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~----~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeCCC----eEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEE
Confidence 5778999999999999999998754 599999999999888875432 13444555 678999999999999
Q ss_pred EEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEe-ccccccceecchhccccCCcc
Q 002196 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV-ESRTFDASRVASAAIVKAPAI 702 (954)
Q Consensus 624 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~ 702 (954)
+||...++....+.+| ...|.+++|+|+|++|++++.|+.|++||+.++ .....+ .+|...+..+.+... ..+
T Consensus 308 ~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~~~h~~~v~~~~~s~~---~~l 381 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTTSK---GDL 381 (611)
T ss_dssp EEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEECTT---SCE
T ss_pred EEeCCCCCcceEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeeecccCCcceEEEEEECCC---CcE
Confidence 9999998887777655 668999999999999999999999999999988 444433 456555554432210 000
Q ss_pred ccccCCCCCc-----cccccccccccccccccC---CCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCC
Q 002196 703 GTFGSANANV-----GTSLGERTAPAAAMVGMS---NDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNL 774 (954)
Q Consensus 703 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 774 (954)
. .+.....+ ....+... ......+. ....+.++++.++++ .++.+++|+.. ....+.
T Consensus 382 ~-s~s~d~~v~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~~------~~~~~~----- 446 (611)
T 1nr0_A 382 F-TVSWDDHLKVVPAGGSGVDSS--KAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG------KLTEVP----- 446 (611)
T ss_dssp E-EEETTTEEEEECSSSSSSCTT--SCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT------EEEEEE-----
T ss_pred E-EEEcCCceEEeecCCcccccc--ceeeeecCCCCcEEEEeCCCcEEEEE-eCceEEEEeCC------ceeeee-----
Confidence 0 00000000 00000000 00000000 001122333333333 33445555411 111111
Q ss_pred CccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccC
Q 002196 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (954)
Q Consensus 775 ~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 854 (954)
+...+.+++|+|||++|++++.|++|++|++..... .... .. +|...|++++||||
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--------------------~~~~--~~--~h~~~v~~v~fspd 502 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--------------------SEVK--TI--VHPAEITSVAFSNN 502 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--------------------EEEE--EE--ECSSCEEEEEECTT
T ss_pred cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--------------------eeee--cc--CCCCceEEEEECCC
Confidence 456789999999999999999999999998753110 0011 12 28899999999999
Q ss_pred CCeEEEec-CCeEEEEEccc-ccEEEe--eCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccc-eE-EEecCC-c
Q 002196 855 DSYVMSAS-GGKISLFNMMT-FKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-VK-TKLKGH-Q 927 (954)
Q Consensus 855 g~~la~~s-dg~i~iwd~~~-~~~~~~--~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~-~~-~~~~~h-~ 927 (954)
|++||+++ |++|++||+.+ +++... +.+|...|++++|+| ||++||+|+.|++|+|||+.+++ .. ..+.+| .
T Consensus 503 g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~ 581 (611)
T 1nr0_A 503 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581 (611)
T ss_dssp SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred CCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcc
Confidence 99999999 99999999987 665544 345999999999999 99999999999999999999875 34 677899 8
Q ss_pred cceeEEEEecCCCeEEEecCCcceec
Q 002196 928 KRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 928 ~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
..|++++|+||++ |+|+|.|++||+
T Consensus 582 ~~v~~v~fs~d~~-l~s~~~D~~i~l 606 (611)
T 1nr0_A 582 SSVNSVIWLNETT-IVSAGQDSNIKF 606 (611)
T ss_dssp SCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred cCeeEEEEcCCCE-EEEecCCCCEEE
Confidence 9999999999998 999999999986
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-59 Score=554.02 Aligned_cols=506 Identities=15% Similarity=0.198 Sum_probs=414.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
+.+.+.+++|+|||+ +|++++ ++.|++|++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467889999999999 667776 57999999988765543 678999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC----CeEEEEECCCCceEEEeccCCCCe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|+++ .|++++.+ +.|++|| +++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997654332 225788999999999999999 57777654 4677776 567778899999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
.+++|+|++. ..|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++.|+. |++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~----i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT----IVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc----EEEEECCCCcEe
Confidence 9999998753 46999999999999999887777778888889999999999999999987654 999999999998
Q ss_pred EEEe-------cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC-CCCCcceEEECCCCCEEEEEeC
Q 002196 591 RTYH-------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-GLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 591 ~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+. ....+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5655 89999999999999999999999999999999988886532 1123445566 6789999999
Q ss_pred CCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccc
Q 002196 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (954)
Q Consensus 663 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (954)
|+.+++|+..++ .....+.+|...+..+. +.++++.+
T Consensus 303 d~~i~~~~~~~~-~~~~~~~gh~~~v~~l~------------------------------------------~spdg~~l 339 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRYGHNKAITALS------------------------------------------SSADGKTL 339 (611)
T ss_dssp TCCEEEEETTTT-EEEEEECCCSSCEEEEE------------------------------------------ECTTSSEE
T ss_pred CCcEEEEeCCCC-CcceEEcCCCCCEEEEE------------------------------------------EeCCCCEE
Confidence 999999999888 67788888888777652 34568899
Q ss_pred ccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCC------------
Q 002196 743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER------------ 810 (954)
Q Consensus 743 vs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~------------ 810 (954)
++++.|++|++||+.+.. . ......+|...|.+++|++++ .+++++.|+.+++|++.....
T Consensus 340 ~s~s~D~~v~~Wd~~~~~----~--~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 412 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGI----S--NRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412 (611)
T ss_dssp EEEETTSCEEEEETTTCC----E--EECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred EEEeCCCcEEEEECCCCc----e--eeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence 999999999999987521 1 122234588999999999876 588999999999999865422
Q ss_pred -------CCCCccc---CCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccE--E
Q 002196 811 -------NSTGKAT---TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--M 877 (954)
Q Consensus 811 -------~~~g~~~---~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~--~ 877 (954)
+++|... ....+++|+ .+.... +. |...+.+++|||||++||+|+ |++|++||+.++.. .
T Consensus 413 ~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~~~~--~~---~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~ 485 (611)
T 1nr0_A 413 QPLGLAVSADGDIAVAACYKHIAIYS--HGKLTE--VP---ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 485 (611)
T ss_dssp CEEEEEECTTSSCEEEEESSEEEEEE--TTEEEE--EE---CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCcEEEEEeCceEEEEe--CCceee--ee---cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee
Confidence 1222111 122455665 222111 11 567899999999999999999 99999999987653 2
Q ss_pred EeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccc-cceEEE--ecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 878 TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTK--LKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 878 ~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~-~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
.. .+|...|++++||| ||++||+++.|++|++||+.+ ++++.. +.+|...|++++|||||++|||||.|++|||
T Consensus 486 ~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~l 562 (611)
T 1nr0_A 486 KT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 562 (611)
T ss_dssp EE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEE
Confidence 34 67999999999999 999999999999999999998 666554 3459999999999999999999999999986
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.1e-59 Score=545.54 Aligned_cols=504 Identities=23% Similarity=0.385 Sum_probs=429.0
Q ss_pred EEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 351 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 351 ~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
..|. |.+.|++++|||||+ +||+|+.|++|+|||. +++.+.+ +.+|...|++++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 4454 999999999999999 7899999999999995 5665543 6789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCC
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 509 (954)
|++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999964 44444 6889999999999999999 79999999999999965 4556677889999
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 589 (954)
|..+.++++. ..+++++.++.+++|+... ........+...+.++.++|+++++++++.++ .|++||. +++.
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK----TVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS----EEEEECT-TSCE
T ss_pred eeeeeeecCC--ccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcCCC----EEEEEeC-CCcE
Confidence 9999998766 6899999999999998654 44555666778999999999999999998644 5999995 6778
Q ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 590 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
+..+.+|.. .+.+++|+|++.++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 888888877 8999999999999999999999999996 46777777755 6689999999999999999999999999
Q ss_pred EccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccc
Q 002196 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (954)
Q Consensus 670 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~ 749 (954)
+... +..+.+.+|...+..+. +.++++.+++++.|+
T Consensus 290 ~~~~--~~~~~~~~h~~~v~~~~------------------------------------------~~~~~~~l~t~~~d~ 325 (577)
T 2ymu_A 290 NRNG--QLLQTLTGHSSSVWGVA------------------------------------------FSPDGQTIASASDDK 325 (577)
T ss_dssp ETTS--CEEEEECCCSSCEEEEE------------------------------------------ECTTSSEEEEEETTS
T ss_pred eCCC--cEEEEEecCCCCeEEEE------------------------------------------ECCCCCEEEEEeCCC
Confidence 9653 56777888877766542 235578899999999
Q ss_pred cccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCC---------------CCCCCC
Q 002196 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN---------------ERNSTG 814 (954)
Q Consensus 750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~---------------~~~~~g 814 (954)
.+++|+... .....+ .+|...+.+++|+|+|+++++++.||.+++|+.... .++++|
T Consensus 326 ~i~~w~~~~----~~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 397 (577)
T 2ymu_A 326 TVKLWNRNG----QHLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 397 (577)
T ss_dssp CEEEEETTS----CEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTS
T ss_pred eEEEEeCCC----CeeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCC
Confidence 999999753 222222 347889999999999999999999999999996533 345666
Q ss_pred cccC----CCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeE
Q 002196 815 KATT----NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATF 889 (954)
Q Consensus 815 ~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~ 889 (954)
..+. +..+++|+... +.+. .+.+ |...|++++|+||+++|++++ |++|++||. +++.+..+.+|...|++
T Consensus 398 ~~l~~~~~d~~v~~~~~~~-~~~~-~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNRNG-QLLQ-TLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp SCEEEEETTSEEEEECTTC-CEEE-EEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred CEEEEEeCCCEEEEEeCCC-CEEE-EecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 6443 45789999644 3332 2444 899999999999999999999 999999996 57888999999999999
Q ss_pred EEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 890 l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
++|+| |+++||+++.|+.|++||. +++++.++.+|...|++++|+|||++||+++.||+|+|
T Consensus 473 ~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 473 VAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534 (577)
T ss_dssp EEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEE
Confidence 99999 9999999999999999994 68899999999999999999999999999999999986
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-56 Score=525.94 Aligned_cols=534 Identities=13% Similarity=0.193 Sum_probs=408.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCC----ceeeeeeeEEEeccCCCccccccccCCCCCC-eEEEEEcc
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR----ERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSP 428 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 428 (954)
.|.+.|.+++|+|+|+ +|++++ ++.|+|||+.++ +.... +.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECc
Confidence 3788999999999999 666776 889999999987 55443 6789999 99999999
Q ss_pred --CCCEEEEEEcCCEEEEEEeeCCc-----ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC----CeEEEEECCCC
Q 002196 429 --DGTLFGVAYSKHIVHLYTYHGGD-----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTG 497 (954)
Q Consensus 429 --dg~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d----g~i~iwd~~~~ 497 (954)
++++|++|+.||.|++||+.+++ .......+..|...|.+++|+|+++ ++++++.+ +.|++|| ++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999997651 1122336778999999999999999 68888877 6888887 67
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC---ceEEEEECCC-CCEEEEEEeCC
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH---SSTMMAYSAD-GARLFSCGTNK 573 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-g~~l~~~~~~~ 573 (954)
+.+..+.+|...|.+++|++++. ..+++++.|+.|++||+.+.+....+..+.. .+.+++|+|+ ++++++++.++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 88899999999999999998763 3899999999999999998888888888888 8999999999 99999998755
Q ss_pred CCceEEEEEeCCCCeEEEEE-e---cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC--CCCCcce
Q 002196 574 EGESYLVEWNESEGAVKRTY-H---GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPC 647 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~ 647 (954)
. |++||+.+++.+..+ . .|.. .|.+++|+ ++.++++++.||.|++||+.+++.+..+..+. ....+.+
T Consensus 230 ~----i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 230 K----ISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp C----EEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred e----EEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 4 999999999999988 5 5655 89999999 99999999999999999999999998887652 1235677
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccc----ccccc
Q 002196 648 IRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE----RTAPA 723 (954)
Q Consensus 648 v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 723 (954)
+.|+ ++.++++++.||.|++||+.++ +....+.+|...+..+.+ +. ...++..+.+.-.... .-...
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~~~-~~------l~~~~~dg~i~~w~~~~~~~~~~~~ 374 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITALTV-NP------LISGSYDGRIMEWSSSSMHQDHSNL 374 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEEET-TT------TEEEETTSCEEETTTTEEECCCCSC
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEEEe-cC------cEEECCCCeEEEEEchhhcCcccCc
Confidence 8885 8999999999999999999987 788888888887776543 11 0000000000000000 00000
Q ss_pred ccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEe
Q 002196 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (954)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw 803 (954)
..... .+++..+++++.|+.+++|++... . ....+..++|+|++..++++ .++.+.+|
T Consensus 375 v~~~~-------~~~~~~l~~~~~d~~i~~~~~~~~---------~-----~~~~~~~~~~s~~~~~~~~~-~~~~~~~~ 432 (615)
T 1pgu_A 375 IVSLD-------NSKAQEYSSISWDDTLKVNGITKH---------E-----FGSQPKVASANNDGFTAVLT-NDDDLLIL 432 (615)
T ss_dssp EEEEE-------CCSTTCCEEEETTTEEEETTEEEE---------E-----CSSCEEEEEECSSSEEEEEE-TTSEEEEE
T ss_pred eEEEE-------ECCCcEEEEEeCCCCEEEEEcccC---------c-----ccCCceEEEEcCCCCEEEEe-CCCceEEE
Confidence 00000 012334444444444444444320 0 01134444444444433333 44444444
Q ss_pred eccCCCCC----CC---------Cc----ccC-CCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CC
Q 002196 804 KWPRNERN----ST---------GK----ATT-NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GG 864 (954)
Q Consensus 804 ~~~~~~~~----~~---------g~----~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg 864 (954)
++..+... .. +. ... +..+++|+..++......+.+ |...|++++|+|+|++|++++ ||
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg 510 (615)
T 1pgu_A 433 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP--LRAKPSYISISPSETYIAAGDVMG 510 (615)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC--CSSCEEEEEECTTSSEEEEEETTS
T ss_pred eccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCC--ccCceEEEEECCCCCEEEEcCCCC
Confidence 43222100 00 11 011 567899999888664333444 899999999999999999998 99
Q ss_pred eEEEEEcccccEEEeeCC-CCCCeeEEEecCC---------CCceEEEEecCccEEEEecccc-ceEEEecCCccceeEE
Q 002196 865 KISLFNMMTFKTMTTFMP-PPPAATFLAFHPQ---------DNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGL 933 (954)
Q Consensus 865 ~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~---------d~~~lasgs~dg~i~iwd~~~~-~~~~~~~~h~~~V~~l 933 (954)
.|++||+.+++.+..+.+ |...|++++|+|. ++++||+|+.||.|++||+.++ +++..+.+|...|+++
T Consensus 511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 590 (615)
T ss_dssp CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEE
Confidence 999999999999999998 9999999999993 5889999999999999999998 8899999999999999
Q ss_pred EEecCCCeEEEecCCcceec
Q 002196 934 AFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 934 ~~s~dg~~l~s~s~Dg~I~i 953 (954)
+|+||++ |++++.||+|+|
T Consensus 591 ~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 591 LWETPST-LVSSGADACIKR 609 (615)
T ss_dssp EEEETTE-EEEEETTSCEEE
T ss_pred EEcCCCC-eEEecCCceEEE
Confidence 9999999 999999999986
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.1e-56 Score=568.66 Aligned_cols=543 Identities=14% Similarity=0.192 Sum_probs=454.8
Q ss_pred ccccceeeeeeCCCCCcceeecCCCC-------CcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCce
Q 002196 320 NLSVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER 391 (954)
Q Consensus 320 ~~~~~i~~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~ 391 (954)
.|...|.+++|+|+|+++++++.|+. ....+..+. |.+.|.+++|+|+|+ ++++|+.||.|+|||+.+++.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCce
Confidence 34556679999999999999987764 455666666 999999999999998 789999999999999999987
Q ss_pred eeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEE
Q 002196 392 IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDL 469 (954)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 469 (954)
+.. +.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|.+.|+++
T Consensus 692 ~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 692 VHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHC 749 (1249)
T ss_dssp EEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEE
T ss_pred EEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEE
Confidence 764 567999999999999 56689999999999999999987665 678999999999
Q ss_pred EEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc-------------CCCCeEEEeeeccCCccEEEEEecCCeEEEE
Q 002196 470 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-------------HESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (954)
Q Consensus 470 ~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 536 (954)
+|+|+++ ++++++.||.|++||+.+++....+.. +...+.+++|++++ ..+++++ ++.+.+|
T Consensus 750 ~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~-~~~v~~~ 824 (1249)
T 3sfz_A 750 RFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--DKIIVAA-KNKVLLF 824 (1249)
T ss_dssp EECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS--SEEEEEE-TTEEEEE
T ss_pred EEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC--CEEEEEc-CCcEEEE
Confidence 9999999 799999999999999999987776542 23367888888765 6777776 7899999
Q ss_pred eCCCCCceeEee-CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEE
Q 002196 537 LYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA 615 (954)
Q Consensus 537 d~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 615 (954)
|+.+........ .+...+.+++|+|+++.+++++.++ .|++||..++..+..+.+|.. .|.+++|+|+++++++
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY----CVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCceeeecCCCcc-ceEEEEECCCCCEEEE
Confidence 999888776654 6677999999999999999998655 499999999999999999877 8999999999999999
Q ss_pred EECCCeEEEEECCCCce-----------------------------eEEEecC------CCCCCcceEEECCCCCEEEEE
Q 002196 616 AGDEFMIKFWDMDNVNL-----------------------------LASIDAD------GGLQASPCIRFNKEGILLAVS 660 (954)
Q Consensus 616 ~~~dg~i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~v~~v~~s~~~~~l~s~ 660 (954)
++.||.|++|++.+... +...... .....+.+++|+|+++++++|
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence 99999999999653110 0001000 013468999999999999999
Q ss_pred eCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCc
Q 002196 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (954)
Q Consensus 661 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (954)
+.||.|++|++.++ .....+.+|...+..+ .+.++++
T Consensus 980 ~~~g~i~i~d~~~~-~~~~~~~~h~~~v~~l------------------------------------------~~s~dg~ 1016 (1249)
T 3sfz_A 980 DEDGAIKIIELPNN-RVFSSGVGHKKAVRHI------------------------------------------QFTADGK 1016 (1249)
T ss_dssp ETTSCCEEEETTTT-SCEEECCCCSSCCCCE------------------------------------------EECSSSS
T ss_pred cCCCCEEEEEcCCC-ceeeecccCCCceEEE------------------------------------------EECCCCC
Confidence 99999999999988 6777777777665543 2345688
Q ss_pred ccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCC-----------
Q 002196 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE----------- 809 (954)
Q Consensus 741 ~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~----------- 809 (954)
.+++++.|+.|++|++.+... . ....|...|.+++|+|++. +++++.||.+++||+..+.
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~----~----~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 1087 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDY----V----FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEE----E----CCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSC
T ss_pred EEEEEcCCCEEEEEECCCCce----E----EEecCCCcEEEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCc
Confidence 899999999999999875221 1 1235888999999999775 7889999999999987652
Q ss_pred -----CCCCCccc----CCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEe
Q 002196 810 -----RNSTGKAT----TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTT 879 (954)
Q Consensus 810 -----~~~~g~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~ 879 (954)
+++++..+ .+.++++||..++..... +.+ |...|++++|||||++||+++ ||.|++||+.+++.+..
T Consensus 1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~--h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKG--HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCC--CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-ecc--CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence 34555433 345899999999886653 444 899999999999999999999 99999999999988776
Q ss_pred e---------CCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCcc
Q 002196 880 F---------MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ 950 (954)
Q Consensus 880 ~---------~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~ 950 (954)
+ .+|.+.|++++|+| ||++|++++ |.|++||+.+++.+..+.+|...|++++|+|||++|++++.||.
T Consensus 1165 ~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~ 1241 (1249)
T 3sfz_A 1165 CAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGI 1241 (1249)
T ss_dssp CCCCC-------CCSCCCEEEECT-TSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCC
T ss_pred eccccccccccccCceEEEEEECC-CCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcE
Confidence 6 57889999999999 999999885 89999999999999999999999999999999999999999999
Q ss_pred eec
Q 002196 951 VRN 953 (954)
Q Consensus 951 I~i 953 (954)
|++
T Consensus 1242 v~v 1244 (1249)
T 3sfz_A 1242 LYI 1244 (1249)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5e-56 Score=570.11 Aligned_cols=543 Identities=14% Similarity=0.221 Sum_probs=436.0
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
...+|.+.|++++|+|+|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+|+|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 3345999999999999999 789999999999999999987764 67899999999999999
Q ss_pred CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 431 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
++|++|+.|+.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999988766 78899999999999997555479999999999999999999999999999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC-------------CCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------------GHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
.+++|++++ .++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++. +
T Consensus 747 ~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~ 819 (1249)
T 3sfz_A 747 NHCRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----N 819 (1249)
T ss_dssp EEEEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-----T
T ss_pred EEEEEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC-----C
Confidence 999999865 79999999999999999887655544321 226788999999999999872 3
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
.+.+||..++.....+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..| ...|.+++|+|+|++|
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEE
Confidence 49999999999888887444458999999999999999999999999999999999888866 6689999999999999
Q ss_pred EEEeCCCcEEEEEccCCCee--------EEE-eccccccceecchhccccCCccccccCCCCCccccccccccccccccc
Q 002196 658 AVSTNDNGIKILANADGIRL--------LRT-VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVG 728 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~~~~--------~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (954)
++++.||.|++|++.+.... ... +......+... . ................ ..........
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~----~~~~~~i~~~- 967 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV--D---NIRGLQLIAGKTGQID----YLPEAQVSCC- 967 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEE--E---SSSSEEEEEESSCCEE----EECCSCEEEE-
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEe--c---CCcceEEEecCcceEE----EcccCcEEEE-
Confidence 99999999999997642100 000 00000000000 0 0000000000000000 0000001111
Q ss_pred cCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCC
Q 002196 729 MSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN 808 (954)
Q Consensus 729 ~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~ 808 (954)
.+.++++.+++++.+|.|++|++..... .. ...+|...|.+++|+|+|+++++++.||.+++|++..+
T Consensus 968 -----~~sp~g~~l~~g~~~g~i~i~d~~~~~~---~~----~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 968 -----CLSPHLEYVAFGDEDGAIKIIELPNNRV---FS----SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp -----EECTTSSEEEEEETTSCCEEEETTTTSC---EE----ECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred -----EEcCCCCEEEEEcCCCCEEEEEcCCCce---ee----ecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 2346688999999999999999875321 11 12358899999999999999999999999999998765
Q ss_pred C---------------CCCCCcc---cCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEE
Q 002196 809 E---------------RNSTGKA---TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (954)
Q Consensus 809 ~---------------~~~~g~~---~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iw 869 (954)
. +.+++.. ..+..+++||..+++.... +.+ |...|++++|+||++++++++ ||+|++|
T Consensus 1036 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1036 DYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD-FTC--HQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp EEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE-EEC--CSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred ceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE-Ecc--cCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 2 1223322 2245789999999886654 444 889999999999999999999 9999999
Q ss_pred EcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEe---------cCCccceeEEEEecCCC
Q 002196 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL---------KGHQKRITGLAFSNTLN 940 (954)
Q Consensus 870 d~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~---------~~h~~~V~~l~~s~dg~ 940 (954)
|+.+++++..+.+|.+.|++++|+| ||++||+|+.||.|++||+.+++.+..+ .+|.+.|++++|||||+
T Consensus 1113 d~~~~~~~~~l~~h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 1191 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1191 (1249)
T ss_dssp CSSSSSCSBCCCCCSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSS
T ss_pred ECCCcceeeeeccCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCC
Confidence 9999999999999999999999999 9999999999999999999999887765 67999999999999999
Q ss_pred eEEEecCCcceec
Q 002196 941 VLVSSGADSQVRN 953 (954)
Q Consensus 941 ~l~s~s~Dg~I~i 953 (954)
+|++++ |+|++
T Consensus 1192 ~l~s~~--g~v~v 1202 (1249)
T 3sfz_A 1192 TLVSAG--GYLKW 1202 (1249)
T ss_dssp CEEEES--SSEEE
T ss_pred EEEECC--CeEEE
Confidence 999986 77764
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-52 Score=507.93 Aligned_cols=540 Identities=11% Similarity=0.064 Sum_probs=403.4
Q ss_pred cccceeeeeeCCCCCcceeecCCCC-------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceee
Q 002196 321 LSVNILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA 393 (954)
Q Consensus 321 ~~~~i~~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~ 393 (954)
|...|.+++|+|+|.++|+.+.|+. ..+....+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+.
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEE
Confidence 3445679999999999999987753 344556677889999999999 87 88999999999999999988765
Q ss_pred eeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeee--------eeeecccCC
Q 002196 394 VKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------LEIEAHVGS 465 (954)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~h~~~ 465 (954)
. + .|...|++++|+|++++|++|+.||.|++||+++++..... ..+.+|.+.
T Consensus 94 ~-------------------~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 94 T-------------------V-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp E-------------------E-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred E-------------------E-cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence 3 2 26689999999999999999999999999999987643100 134679999
Q ss_pred EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC------------------CCCeEEEeeeccCCccEEEEE
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH------------------ESPVYSICPHHKENIQFIFST 527 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~s~ 527 (954)
|.+++|+|++.. .+++|+.|+.| +||+++++++..+..| ...|.+++|+|++ .+|+++
T Consensus 154 V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasg 229 (902)
T 2oaj_A 154 IVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITI 229 (902)
T ss_dssp CCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEE
T ss_pred eEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEE
Confidence 999999997544 68999999999 9999999999888766 4779999999875 799999
Q ss_pred ecCCeEEEEeCCCCCceeEee-----C-------------CCCceEEEEEC----CCC-CEEEEEEeCCC-CceEEEEEe
Q 002196 528 ATDGKIKAWLYDNLGSRVDYD-----A-------------PGHSSTMMAYS----ADG-ARLFSCGTNKE-GESYLVEWN 583 (954)
Q Consensus 528 s~dg~i~iwd~~~~~~~~~~~-----~-------------~~~~v~~~~~s----~~g-~~l~~~~~~~~-~~~~i~iwd 583 (954)
+.||.|++||+++++...... . +...|.+++|+ |++ ..+++++.+.. ....+.+|+
T Consensus 230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 999999999999876554311 1 23369999995 454 45555554421 113588888
Q ss_pred CC------------------CCeEEEEEecCCCCCeEEEEEeC----------CCCEEEEEECCCeEEEEECCCCceeEE
Q 002196 584 ES------------------EGAVKRTYHGLGKRSVGVVQFDT----------TKNRFLAAGDEFMIKFWDMDNVNLLAS 635 (954)
Q Consensus 584 ~~------------------~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~ 635 (954)
.. +++..+.+.......+..+.+.+ +...+++++.||.|++||+.++.....
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~ 389 (902)
T 2oaj_A 310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK 389 (902)
T ss_dssp EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred cCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccc
Confidence 42 22334444422233777887765 334789999999999999977643221
Q ss_pred -------------------E--------------------ecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCe
Q 002196 636 -------------------I--------------------DADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIR 676 (954)
Q Consensus 636 -------------------~--------------------~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 676 (954)
+ ...++...+.+++|+|++++|++|+.|++|++||+.++.
T Consensus 390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~- 468 (902)
T 2oaj_A 390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD- 468 (902)
T ss_dssp GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT-
T ss_pred cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc-
Confidence 0 011233456677889999999999999999999998872
Q ss_pred eE--EEe----c-----cccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccc
Q 002196 677 LL--RTV----E-----SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (954)
Q Consensus 677 ~~--~~~----~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~ 745 (954)
.. ..+ . +|...|..+ .+.++++.++++
T Consensus 469 ~~~~~~~~~~l~~~~~~~h~~~V~sv------------------------------------------afspdg~~LAsg 506 (902)
T 2oaj_A 469 IQDNASFEVNLSRTLNKAKELAVDKI------------------------------------------SFAAETLELAVS 506 (902)
T ss_dssp TTTTBCEEEEHHHHTTCSSSCCEEEE------------------------------------------EEETTTTEEEEE
T ss_pred ccCCceEEeechhhcCCCCCCceeEE------------------------------------------EecCCCCeEEEE
Confidence 11 001 0 333333332 234568899999
Q ss_pred cccccccccccccccCCC--------c------------------------------eeEEecCCCCCccceEEEEEecC
Q 002196 746 EAVEKSRIWKLTEITEPS--------Q------------------------------CRSLRLPDNLTAMRVSRLIYTNS 787 (954)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~--------~------------------------------~~~~~~~~~~~~~~v~~~~~spd 787 (954)
+.|++|++|++.+..... . .........+|...|++++||||
T Consensus 507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 999999999998642100 0 00001112358999999999999
Q ss_pred CceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCC-CCCCCCCccEEEec-----cCC---CeE
Q 002196 788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS-DTNPEDAVPCFALS-----KND---SYV 858 (954)
Q Consensus 788 g~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~-~~~~~~~v~~~~~s-----~dg---~~l 858 (954)
| +|++++.|++|++||+..... ++. +.+ ..+. + |...|++++|| ||| ++|
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~-------------~~~---~~~--~~~~~g--h~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAI-------------IYM---ENI--REISGA--QSACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEE-------------EEE---EEG--GGTCSS--CCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred c-EEEEEeCCCcEEEEECCCCeE-------------EEE---eeh--hHhccc--cccceEEEEEEEEecCCCCCcceEE
Confidence 9 999999999999998653210 000 000 1132 4 99999999999 886 899
Q ss_pred EEec-CCeEEEEEc---ccccEEEeeCCCC-----CCeeEEE-ec----------------------CCCCceEEEEecC
Q 002196 859 MSAS-GGKISLFNM---MTFKTMTTFMPPP-----PAATFLA-FH----------------------PQDNNIIAIGMED 906 (954)
Q Consensus 859 a~~s-dg~i~iwd~---~~~~~~~~~~~h~-----~~v~~l~-~s----------------------p~d~~~lasgs~d 906 (954)
++|+ |++|++||+ .+|+...++.+|. ++|..++ |+ + ++.+||++ +
T Consensus 646 ~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~~--~ 722 (902)
T 2oaj_A 646 VCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLITG--F 722 (902)
T ss_dssp EEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEEC--S
T ss_pred EEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC-CeEEEEEe--c
Confidence 9999 999999999 8899888887764 6777776 66 4 56566654 7
Q ss_pred ccEEEEeccccceEEEecCCccceeEE---E------EecCCCeEEEecCCcceec
Q 002196 907 SSIQIYNVRVDEVKTKLKGHQKRITGL---A------FSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 907 g~i~iwd~~~~~~~~~~~~h~~~V~~l---~------~s~dg~~l~s~s~Dg~I~i 953 (954)
..|+||++.++++..+..+|...+.++ . |+++|..|++.+.||+|+|
T Consensus 723 ~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 778 (902)
T 2oaj_A 723 DDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRV 778 (902)
T ss_dssp SEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEE
T ss_pred cceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEE
Confidence 789999999999998887787777776 6 7899999999999999986
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-52 Score=505.43 Aligned_cols=541 Identities=12% Similarity=0.097 Sum_probs=382.9
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
....++|.+.|++++|+|+++ +||+|+.||+|+||+..+.+.... ..|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEE--------------------cCCCCCEEEEEEcC
Confidence 345567999999999999999 889999999999999987765432 34788999999999
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE--------
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-------- 500 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------- 500 (954)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||.|++||+.++++.
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 8899999999999999999987665 443 778999999999999 7999999999999999988764
Q ss_pred ---EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC------------------CCceEEEEE
Q 002196 501 ---YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------------GHSSTMMAY 559 (954)
Q Consensus 501 ---~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~ 559 (954)
..+.+|.+.|.+++|+|... ..+++|+.||.| +||+++......+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccCCC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 23467999999999998532 589999999999 9999987776666544 357999999
Q ss_pred CCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE--Ee---cC------------CCCCeEEEEEeC----CC-CEEEEEE
Q 002196 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRT--YH---GL------------GKRSVGVVQFDT----TK-NRFLAAG 617 (954)
Q Consensus 560 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~i~~~~~~~----~~-~~l~~~~ 617 (954)
+|+|++|++++.|+. |++||+++++++.. +. .| +...|.+++|++ ++ ..+++|+
T Consensus 220 spdg~~lasgs~Dg~----i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIHEDNS----LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEETTCC----EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cCCCCEEEEEECCCe----EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 999999999987654 99999999987754 21 12 123689999964 43 4566776
Q ss_pred CC-----CeEEEEECC------------------CCceeEEEecCCCCCCcceEEECC----------CCCEEEEEeCCC
Q 002196 618 DE-----FMIKFWDMD------------------NVNLLASIDADGGLQASPCIRFNK----------EGILLAVSTNDN 664 (954)
Q Consensus 618 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~s~~~dg 664 (954)
.+ ..+.+|++. +.+....+.. .+...|..+.+.+ ++..+++++.||
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 55 378899852 2233444432 1234677787755 344788899999
Q ss_pred cEEEEEccCCCeeEEE------eccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCC
Q 002196 665 GIKILANADGIRLLRT------VESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (954)
Q Consensus 665 ~i~iwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (954)
.|++|++.++...... +..|...+..+.+..... ..+...... . .....+............++++
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-~~w~~~~~~------~-~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN-KLWLGALSA------A-QNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-HHHHHHHHT------T-BCCCCSCCCSBCCCCCCCCCSE
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-HHHHHHHhc------c-cCCCCcccCCcCCCCccccccc
Confidence 9999999777333221 223333333322211000 000000000 0 0000000000000112245678
Q ss_pred CcccccccccccccccccccccCCC-ceeEEec---CCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCC-
Q 002196 739 VKPKIADEAVEKSRIWKLTEITEPS-QCRSLRL---PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST- 813 (954)
Q Consensus 739 ~~~lvs~~~d~~i~iw~~~~~~~~~-~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~- 813 (954)
++.+++++.|++|++||+....... ......+ ...+|...|.+++|+|||++|++++.||+|+||++........
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 9999999999999999998653211 1111111 0126888999999999999999999999999999986532100
Q ss_pred ------CcccCCCCc----------ccc-----CCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEc
Q 002196 814 ------GKATTNQAP----------QLW-----QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNM 871 (954)
Q Consensus 814 ------g~~~~~~~i----------~l~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~ 871 (954)
...+..... .+. ....+......+.+ |...|++++||||| +||+|+ |++|+|||+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 000000000 000 00111111223444 99999999999999 999999 999999999
Q ss_pred ccccEEE-----eeC-CCCCCeeEEEec-----CCCC---ceEEEEecCccEEEEec---cccceEEEecCCc-----cc
Q 002196 872 MTFKTMT-----TFM-PPPPAATFLAFH-----PQDN---NIIAIGMEDSSIQIYNV---RVDEVKTKLKGHQ-----KR 929 (954)
Q Consensus 872 ~~~~~~~-----~~~-~h~~~v~~l~~s-----p~d~---~~lasgs~dg~i~iwd~---~~~~~~~~~~~h~-----~~ 929 (954)
.++..+. .+. +|.+.|++++|| | || ++|++|+.|++|++||+ .+|++...+.+|. +.
T Consensus 604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~ 682 (902)
T 2oaj_A 604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGP 682 (902)
T ss_dssp TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCC
T ss_pred CCCeEEEEeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCc
Confidence 8877653 343 899999999999 8 64 89999999999999999 8899999888874 77
Q ss_pred eeEEE-Ee
Q 002196 930 ITGLA-FS 936 (954)
Q Consensus 930 V~~l~-~s 936 (954)
|.++. |+
T Consensus 683 v~~i~~~~ 690 (902)
T 2oaj_A 683 IHKIDAFS 690 (902)
T ss_dssp CCEEEEEE
T ss_pred eEEEEeEe
Confidence 88777 76
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-51 Score=485.21 Aligned_cols=526 Identities=12% Similarity=0.126 Sum_probs=402.0
Q ss_pred ccceeeeeeCCCCCcceeecCCC------CCc----ceEEEec-CCCC-eeEEEEcC--CCCeEEEEEEcCCeEEEEeCC
Q 002196 322 SVNILPVAYTPQSLGQSSYSTDD------LPK----TVVMTLN-QGSA-VKSMDFHP--VQQILLVVGTNMGDVMLWEVG 387 (954)
Q Consensus 322 ~~~i~~~~~s~~g~~~~~~~~~~------~~~----~~~~~~~-h~~~-V~~~~~sp--~g~~ll~~g~~dg~i~iwd~~ 387 (954)
...|.+++|+|+|+++++...+. ... .....+. |.+. |++++|+| +++ +|++|+.||.|++||+.
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWT 96 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCC
Confidence 34567899999999988876321 123 4555555 9999 99999999 998 78999999999999997
Q ss_pred CC------ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC----CEEEEEEeeCCcceeeee
Q 002196 388 SR------ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHL 457 (954)
Q Consensus 388 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 457 (954)
++ +.... ..+..|...|.+++|+|++++|++++.+ +.|++|| .++...
T Consensus 97 ~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~--- 154 (615)
T 1pgu_A 97 FDKESNSVEVNVK-----------------SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG--- 154 (615)
T ss_dssp EEGGGTEEEEEEE-----------------EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---
T ss_pred CCccccccccccc-----------------chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---
Confidence 65 11111 1145789999999999999999999988 6888888 444444
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC---CeEEEeeecc-CCccEEEEEecCCeE
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES---PVYSICPHHK-ENIQFIFSTATDGKI 533 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~l~s~s~dg~i 533 (954)
.+.+|...|.+++|+|+++. .+++++.|+.|++||+.+++.+..+.+|.. .|.+++|+++ + .++++++.||.|
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i 231 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKI 231 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCE
T ss_pred eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeE
Confidence 67899999999999999975 589999999999999999999999999999 9999999886 5 799999999999
Q ss_pred EEEeCCCCCceeEe-e---CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC---CCCeEEEEE
Q 002196 534 KAWLYDNLGSRVDY-D---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG---KRSVGVVQF 606 (954)
Q Consensus 534 ~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~ 606 (954)
++||+++.+....+ . .+...|.+++|+ +++++++++.++ .|++||+++++.+..+..+. ...+.++.|
T Consensus 232 ~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 232 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp EEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred EEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC----cEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 99999998887777 5 778899999999 999999998644 59999999999999888762 236777777
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccc
Q 002196 607 DTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTF 686 (954)
Q Consensus 607 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 686 (954)
. ++.++++++.||.|++||+.+++.+..+..| ...|.+++| |+ +++++.||.|++|++. .+. .+|..
T Consensus 307 ~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~~~~ 373 (615)
T 1pgu_A 307 T-GNGRIISLSLDGTLNFYELGHDEVLKTISGH--NKGITALTV-NP---LISGSYDGRIMEWSSS----SMH--QDHSN 373 (615)
T ss_dssp E-ETTEEEEEETTSCEEEEETTEEEEEEEECCC--SSCEEEEET-TT---TEEEETTSCEEETTTT----EEE--CCCCS
T ss_pred C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCC--CCCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--CcccC
Confidence 5 8899999999999999999999988888765 668999999 88 9999999999999987 233 66777
Q ss_pred cceecchhccccCCccccccCCCCCcccccccccc--ccccccccCCCCCCCCCCcccccccccccccccccccccCCCc
Q 002196 687 DASRVASAAIVKAPAIGTFGSANANVGTSLGERTA--PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQ 764 (954)
Q Consensus 687 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~ 764 (954)
.+..+.+... .....+.....+.-....... ..... ..+.+++..++++ .++.+.+|+.... ..
T Consensus 374 ~v~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~------~~~s~~~~~~~~~-~~~~~~~~~~~~~---~~ 439 (615)
T 1pgu_A 374 LIVSLDNSKA----QEYSSISWDDTLKVNGITKHEFGSQPKV------ASANNDGFTAVLT-NDDDLLILQSFTG---DI 439 (615)
T ss_dssp CEEEEECCST----TCCEEEETTTEEEETTEEEEECSSCEEE------EEECSSSEEEEEE-TTSEEEEEETTTC---CE
T ss_pred ceEEEEECCC----cEEEEEeCCCCEEEEEcccCcccCCceE------EEEcCCCCEEEEe-CCCceEEEeccCC---ce
Confidence 7666544111 111111111100000000000 00011 1234556666666 7789999997532 12
Q ss_pred eeEEecCCCCCccceEEEEEecCCceEEEeec-CCeEEEeeccCC-----------------CCCCCCcccC----CCCc
Q 002196 765 CRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRN-----------------ERNSTGKATT----NQAP 822 (954)
Q Consensus 765 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~v~lw~~~~~-----------------~~~~~g~~~~----~~~i 822 (954)
...+. +...+.+++|+ ++++++++. ||.+++|++... .+++++..+. +..+
T Consensus 440 ~~~~~-----~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 512 (615)
T 1pgu_A 440 IKSVR-----LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 512 (615)
T ss_dssp EEEEE-----CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecc-----cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeE
Confidence 22222 45667777777 666777777 777777776542 1234444322 3467
Q ss_pred cccCCCCcccccccCCCCCCCCCccEEEecc----------CCCeEEEec-CCeEEEEEcccc-cEEEeeCCCCCCeeEE
Q 002196 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSK----------NDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFL 890 (954)
Q Consensus 823 ~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~h~~~v~~l 890 (954)
++|+..+++.+...... |...|++++|+| ++++||+++ ||.|++||+.++ +++..+.+|...|+++
T Consensus 513 ~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 513 LLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 590 (615)
T ss_dssp EEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred EEeeCCCCcceeEeecC--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEE
Confidence 77777777766543322 889999999999 999999999 999999999998 7889999999999999
Q ss_pred EecCCCCceEEEEecCccEEEEeccc
Q 002196 891 AFHPQDNNIIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 891 ~~sp~d~~~lasgs~dg~i~iwd~~~ 916 (954)
+|+| +++ |++++.||.|++|++++
T Consensus 591 ~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 591 LWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred EEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999 899 99999999999999875
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-48 Score=475.05 Aligned_cols=460 Identities=14% Similarity=0.203 Sum_probs=373.5
Q ss_pred EEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 350 ~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
.+.+. |.+.|++++|||+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 34444 999999999999999 789999999999999999887654 567999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCC
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHE 507 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~ 507 (954)
++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++||+.++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999987666 6788999999999999999 6999999999999999987 6778889999
Q ss_pred CCeEEEeeec-cCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC-CceEEEEECC--CCCEEEEEEeCCCCceEEEEEe
Q 002196 508 SPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSA--DGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 508 ~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd 583 (954)
..|.+++|+| ++ ..+++++.||.|++||+.+......+..+. ..+.+++|+| ++.++++++.+ +.|++||
T Consensus 141 ~~v~~~~~~p~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d 214 (814)
T 3mkq_A 141 HFVMCVAFNPKDP--STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWD 214 (814)
T ss_dssp SCEEEEEEETTEE--EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEE
T ss_pred CcEEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEE
Confidence 9999999998 44 799999999999999998877777666554 7899999999 99999998764 4599999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC--EEEEEe
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVST 661 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~ 661 (954)
..+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+ ...+.+++|+|++. ++++++
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTCGGGEEEEEE
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCCCceEEEEEe
Confidence 999999999998876 8999999999999999999999999999999999988766 55899999999987 455554
Q ss_pred CCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcc
Q 002196 662 NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741 (954)
Q Consensus 662 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (954)
++.+.+|++..+.. ...+.. ++..
T Consensus 292 -~~~~~~~~~~~~~~-~~~~~~------------------------------------------------------~g~~ 315 (814)
T 3mkq_A 292 -DNGFTVLSLGNDEP-TLSLDP------------------------------------------------------VGKL 315 (814)
T ss_dssp -TTEEEEEECSCCSC-CEEECS------------------------------------------------------SSEE
T ss_pred -CCCEEEEEcCCCCc-eeEECC------------------------------------------------------CCCE
Confidence 66788998876522 111111 1111
Q ss_pred cccccccccc---------cccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCC
Q 002196 742 KIADEAVEKS---------RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812 (954)
Q Consensus 742 lvs~~~d~~i---------~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~ 812 (954)
+++++.+... ..|++.......... .. ...+...+.+++|+|+|+++++++ +|.+.+|++...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~---- 387 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQT-KE--LGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW---- 387 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCC-EE--ECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT----
T ss_pred EEECcccccceeeeeeecccccccccCccceeee-ec--CCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc----
Confidence 2211111100 012222111100000 00 122566789999999999998887 899999975310
Q ss_pred CCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEE
Q 002196 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 891 (954)
Q Consensus 813 ~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 891 (954)
.. .+.+.+.+++|+|||+++|+++ +|.|++|+ .+.+|...+.+++
T Consensus 388 ------------------~~--------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~ 433 (814)
T 3mkq_A 388 ------------------RN--------KAFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMH 433 (814)
T ss_dssp ------------------EE--------EEEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCS
T ss_pred ------------------cc--------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCC
Confidence 00 0346788999999999999998 89999996 3455788899999
Q ss_pred ecCCCC---ceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEe
Q 002196 892 FHPQDN---NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (954)
Q Consensus 892 ~sp~d~---~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 945 (954)
|+| ++ .+|++++.|+.|++||+.+++.+..+.+|.. .+.|||||++|+++
T Consensus 434 ~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 434 SAI-DRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIV 486 (814)
T ss_dssp SCC-CEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEE
T ss_pred cCc-cceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEE
Confidence 999 87 5888999999999999999999999998875 89999999999999
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-45 Score=410.42 Aligned_cols=284 Identities=20% Similarity=0.384 Sum_probs=262.6
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
+|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|...|.+++|+|++++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEE
Confidence 5778999999999998 889999999999999999887654 67899999999999999999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999887666 7889999999999999999 79999999999999999999999999999999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCC--------------------CCEEEEEEeCC
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD--------------------GARLFSCGTNK 573 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------g~~l~~~~~~~ 573 (954)
.+++++ .++++|+.|+.|++||+.+......+..|...|.+++|+|+ |.++++++.|+
T Consensus 241 ~~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 241 RPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 988765 79999999999999999998888888889999999999996 66899988644
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
.|++||++++.++..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++++..+..| ...|++++|+|+
T Consensus 319 ----~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~ 391 (410)
T 1vyh_C 319 ----TIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSLDFHKT 391 (410)
T ss_dssp ----EEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--SSCEEEEEECSS
T ss_pred ----eEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--CCcEEEEEEcCC
Confidence 599999999999999999877 8999999999999999999999999999999999999866 568999999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 002196 654 GILLAVSTNDNGIKILAN 671 (954)
Q Consensus 654 ~~~l~s~~~dg~i~iwd~ 671 (954)
+.+|++|+.||.|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
No 13
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-43 Score=430.72 Aligned_cols=449 Identities=12% Similarity=0.120 Sum_probs=359.6
Q ss_pred ccccceeeeeeCCCCCcceeecCCC-------CCcceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCce
Q 002196 320 NLSVNILPVAYTPQSLGQSSYSTDD-------LPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER 391 (954)
Q Consensus 320 ~~~~~i~~~~~s~~g~~~~~~~~~~-------~~~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~ 391 (954)
+|+..|.+++|+|+|.++++...++ ..+..+..+. |.++|++++|+|+++ +|++|+.||.|++||+.+++.
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE
Confidence 4566788999999999999987765 2455666666 999999999999999 789999999999999999987
Q ss_pred eeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEE
Q 002196 392 IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471 (954)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 471 (954)
+.. +.+|...|++++|+|++++|++++.||.|++||+.++.... ..+.+|...|.+++|
T Consensus 90 ~~~-------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 90 VVD-------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEE-------------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE--EEEECCSSCEEEEEE
T ss_pred EEE-------------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE--EEEcCCCCcEEEEEE
Confidence 654 56799999999999999999999999999999998873222 267889999999999
Q ss_pred ec-CCCceEEEEEcCCCeEEEEECCCCceEEEeccCC-CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC
Q 002196 472 SY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 549 (954)
Q Consensus 472 s~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 549 (954)
+| ++. .+++++.||.|++||+.++.....+..+. ..+.+++|++.+++.++++++.||.|++||+.+......+..
T Consensus 149 ~p~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 226 (814)
T 3mkq_A 149 NPKDPS--TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (814)
T ss_dssp ETTEEE--EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred EcCCCC--EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 99 666 69999999999999999988888777655 889999999866678999999999999999999888888888
Q ss_pred CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCE-EEEEECCCeEEEEECC
Q 002196 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR-FLAAGDEFMIKFWDMD 628 (954)
Q Consensus 550 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~ 628 (954)
+...+.+++|+|++.++++++.++. |++||..+++.+..+..+.. .+.+++|+|++.. +++++.++.+.+|++.
T Consensus 227 ~~~~v~~~~~~~~~~~l~~~~~dg~----v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 227 HMSNVSFAVFHPTLPIIISGSEDGT----LKIWNSSTYKVEKTLNVGLE-RSWCIATHPTGRKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSC----EEEEETTTCSEEEEECCSSS-SEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCe----EEEEECCCCcEEEEeecCCC-cEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence 8889999999999999999987554 99999999999999988876 8999999999873 2445556778889875
Q ss_pred CCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCc---EE------EEEccCCC---eeEEEeccccccceecchhcc
Q 002196 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG---IK------ILANADGI---RLLRTVESRTFDASRVASAAI 696 (954)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~---i~------iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~ 696 (954)
.+. ..+.++|+|..+++++.+.. +. .|++..+. .....+..+...+..+
T Consensus 302 ~~~--------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 362 (814)
T 3mkq_A 302 NDE--------------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL----- 362 (814)
T ss_dssp CCS--------------CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE-----
T ss_pred CCC--------------ceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee-----
Confidence 432 35677788888877665542 11 12222221 1223343333332222
Q ss_pred ccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCc
Q 002196 697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776 (954)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 776 (954)
.+.++++.+++++ ++.+.+|++... .. .+.
T Consensus 363 -------------------------------------~~spdg~~la~~~-~~~~~i~~~~~~-----~~-------~~~ 392 (814)
T 3mkq_A 363 -------------------------------------AHSPNGRFVTVVG-DGEYVIYTALAW-----RN-------KAF 392 (814)
T ss_dssp -------------------------------------EECTTSSEEEEEE-TTEEEEEETTTT-----EE-------EEE
T ss_pred -------------------------------------EECCCCCEEEEec-CCEEEEEECccc-----cc-------cCC
Confidence 2234566677766 788888886421 01 134
Q ss_pred cceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCC-
Q 002196 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND- 855 (954)
Q Consensus 777 ~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg- 855 (954)
+.+.+++|+|||+++++++.+|.+++|+. +.+ |...+.+++|+|||
T Consensus 393 ~~i~~~~~spdg~~la~~~~~g~v~l~~~-------------------------------~~~--~~~~v~~~~~s~dg~ 439 (814)
T 3mkq_A 393 GKCQDFVWGPDSNSYALIDETGQIKYYKN-------------------------------FKE--VTSWSVPMHSAIDRL 439 (814)
T ss_dssp EECSEEEECTTSSCEEEECTTCCEEEEET-------------------------------TEE--CTTCCCCCSSCCCEE
T ss_pred CceEEEEEeCCCCeEEEEeCCCcEEEEEC-------------------------------CCC--ccceEEcCCcCccce
Confidence 67889999999999999999999999952 222 66788899999998
Q ss_pred --CeEEEec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEE
Q 002196 856 --SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903 (954)
Q Consensus 856 --~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasg 903 (954)
++|++++ |+.|++||+.+++.+..+..|.. .++|+| ||++||++
T Consensus 440 ~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~-dg~~la~~ 486 (814)
T 3mkq_A 440 FSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSD-NGELVMIV 486 (814)
T ss_dssp ECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECT-TSSEEEEE
T ss_pred ecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcC-CCCEEEEE
Confidence 5777776 99999999999999999987764 999999 99999999
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=353.31 Aligned_cols=295 Identities=15% Similarity=0.180 Sum_probs=262.9
Q ss_pred cceEEEe-cCCCCeeEEEEcCCC---CeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 347 KTVVMTL-NQGSAVKSMDFHPVQ---QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 347 ~~~~~~~-~h~~~V~~~~~sp~g---~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
+.+...+ .|.+.|++++|+|++ ..+|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 3444554 499999999999863 23899999999999999987654321 11578999999
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 502 (954)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999987766 6778889999999999999 799999999999999999999999
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
+..|...|.+++|+|++ ++|++++.||.|++||+++.+....+..+...|.+++|+|++++|++++.|+. |++|
T Consensus 160 ~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~----i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY----IKIY 233 (321)
T ss_dssp EECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC----EEEE
T ss_pred ecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe----EEEE
Confidence 99999999999998766 79999999999999999998888888888889999999999999999987554 9999
Q ss_pred eCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 583 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
|++++.....+.+|.. .|.+++|+|++.+|++++.|+.|++||+.+++++..+..| ...|.+++|+|++++|++++.
T Consensus 234 d~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 234 DVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp ETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEET
T ss_pred ECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeC
Confidence 9999999999999877 8999999999999999999999999999999999998765 668999999999999999999
Q ss_pred CCcEEEEEcc
Q 002196 663 DNGIKILANA 672 (954)
Q Consensus 663 dg~i~iwd~~ 672 (954)
||.|++||..
T Consensus 311 d~~i~vwd~p 320 (321)
T 3ow8_A 311 DQEIHIYDCP 320 (321)
T ss_dssp TCCEEEEECC
T ss_pred CCeEEEEeCC
Confidence 9999999963
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-39 Score=353.49 Aligned_cols=292 Identities=18% Similarity=0.304 Sum_probs=261.1
Q ss_pred ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
....++. |.+.|++++|+|+++ +|++|+.||+|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 105 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEE
Confidence 4455555 999999999999998 889999999999999999887654 4568999999999
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCcc-eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
+|++++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|+.|++||+.+++.+..+.+
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcC
Confidence 99999999999999999999987542 223336789999999999999875 89999999999999999999999999
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
|...|.+++|+|++ .++++|+.|+.|++||+++......+..|...|.+++|+|++++|++++.|+. |++||++
T Consensus 183 h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~----v~iwd~~ 256 (340)
T 1got_B 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT----CRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEETT
T ss_pred CCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc----EEEEECC
Confidence 99999999998865 79999999999999999998888888889999999999999999999987654 9999999
Q ss_pred CCeEEEEEecCC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 586 EGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 586 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
+++.+..+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+.+| ...|.+++|+|+|.+|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCc
Confidence 998887775332 236899999999999999999999999999999999988866 66899999999999999999999
Q ss_pred cEEEEE
Q 002196 665 GIKILA 670 (954)
Q Consensus 665 ~i~iwd 670 (954)
.|++||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-39 Score=353.22 Aligned_cols=295 Identities=15% Similarity=0.239 Sum_probs=261.9
Q ss_pred ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
....++. |.+.|++++|+|+++ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 3445554 999999999999998 789999999999999998876653 4568889999999
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCcc---eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGDE---LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
+|+|++|++|+.|+.+++|++..... ......+.+|...|.+++|+|++. .+++++.|++|++||+.+++++..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999865421 122335778999999999999998 6999999999999999999999999
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
.+|...|.++++++..++.+|++|+.||.|++||+++......+..|...|.+++|+|++.+|++++.|+. |++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~----v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT----CRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe----EEEEE
Confidence 99999999999998877789999999999999999999888888889999999999999999999987554 99999
Q ss_pred CCCCeEEEEEecCC-CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 584 ESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 584 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
+++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..| ...|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcC
Confidence 99998877776442 236789999999999999999999999999999998888765 668999999999999999999
Q ss_pred CCcEEEEE
Q 002196 663 DNGIKILA 670 (954)
Q Consensus 663 dg~i~iwd 670 (954)
||.|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=345.14 Aligned_cols=289 Identities=16% Similarity=0.252 Sum_probs=258.4
Q ss_pred cCCCCCCeEEEEEccC----CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 414 SSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
+.+|.+.|++++|+|+ +++|++|+.|++|+||++.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 679999999999999999876532 2336889999999999999998 79999999999
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
++||+.+++.+..+..|...+.+++|+|++ ++|++++.||.|++||+++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTS--SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCC--CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999998766 799999999999999999998888888888899999999999999999
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEE
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (954)
+.++. |++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++....+..| ...|.+++
T Consensus 183 ~~dg~----i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 255 (321)
T 3ow8_A 183 AIDGI----INIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA 255 (321)
T ss_dssp ETTSC----EEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred cCCCe----EEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence 87654 99999999999999998877 8999999999999999999999999999999998888765 66899999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccccccc
Q 002196 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (954)
Q Consensus 650 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (954)
|+|++.+|++++.|+.|++||+.++ +++..+.+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~---------------------------------------------- 288 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFFD---------------------------------------------- 288 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC----------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEcC----------------------------------------------
Confidence 9999999999999999999999887 44443322
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeecc
Q 002196 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (954)
Q Consensus 730 ~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~ 806 (954)
|...|.+++|+|+|++|++++.||.|++||.+
T Consensus 289 ---------------------------------------------h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 ---------------------------------------------HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ---------------------------------------------CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ---------------------------------------------CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 56678999999999999999999999999854
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-39 Score=361.78 Aligned_cols=286 Identities=19% Similarity=0.320 Sum_probs=260.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|..+|++++|+|++++|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56899999999999999999999999999999999988666 7889999999999999999 799999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.+++++..+.+|...|.+++|+|++ .++++++.|++|++||++++.....+..|...+.++.++|++.++++++.|+
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 99999999999999999999999866 7999999999999999999988888999999999999999999999998765
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCC--------------------CCEEEEEECCCeEEEEECCCCcee
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--------------------KNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
. |++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.++.++
T Consensus 257 ~----v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 257 T----VRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp C----EEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred e----EEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 4 99999999999999988877 8999999996 678999999999999999999999
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcc
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (954)
..+..| ...|.+++|+|++++|++++.||.|++||+.++ +....+.
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~------------------------------- 377 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN------------------------------- 377 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE-------------------------------
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc-------------------------------
Confidence 998866 568999999999999999999999999998766 2222221
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEE
Q 002196 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (954)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 793 (954)
+|...|.+++|+|++.+|++
T Consensus 378 ------------------------------------------------------------~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 378 ------------------------------------------------------------AHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEECSSSSCEEE
T ss_pred ------------------------------------------------------------CCCCcEEEEEEcCCCCEEEE
Confidence 26678999999999999999
Q ss_pred eecCCeEEEeec
Q 002196 794 LASNAVHKLWKW 805 (954)
Q Consensus 794 ~~~dg~v~lw~~ 805 (954)
++.||+|++|++
T Consensus 398 gs~D~~i~vW~~ 409 (410)
T 1vyh_C 398 GSVDQTVKVWEC 409 (410)
T ss_dssp EETTSEEEEEC-
T ss_pred EeCCCcEEEEeC
Confidence 999999999974
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.3e-39 Score=343.28 Aligned_cols=291 Identities=18% Similarity=0.336 Sum_probs=253.8
Q ss_pred eEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 349 ~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
..+++. |.+.|++++|+|+++ +|++|+.||+|++||+.++..+.. +..|..+|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 345555 999999999999999 789999999999999999876654 56799999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGH 506 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~ 506 (954)
|++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|++||++++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999988766 7889999999999999999 7999999999999999887 456788999
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-CCCCceEEEEECC--CCCEEEEEEeCCCCceEEEEEe
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd 583 (954)
...|.+++|+|.. +.++++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++.|+ .|++||
T Consensus 140 ~~~v~~v~~~p~~-~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL----TIKIWD 214 (304)
T ss_dssp CSCEEEEEECTTC-TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEE
T ss_pred CCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEe
Confidence 9999999999843 3799999999999999998877665554 3446889999986 778999998644 599999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC--EEEEEe
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVST 661 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~s~~ 661 (954)
+++++++..+.+|.. .|.+++|+|++.+|++|+.||.|++||+.+++.+..+..+ ...+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCCCceEEEEec
Confidence 999999999999987 8999999999999999999999999999999999999865 56899999999875 577777
Q ss_pred CCCcEEEEEccC
Q 002196 662 NDNGIKILANAD 673 (954)
Q Consensus 662 ~dg~i~iwd~~~ 673 (954)
+| .+.+|++.+
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 65 467777654
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.6e-39 Score=346.61 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=256.6
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|.+.|++++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887665 6788999999999999999 799999999999999
Q ss_pred CCCC----ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 494 AVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 494 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
+.++ .....+.+|...|.++.|.+++ .+++++.|+.|++||+++......+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 3566788999999999998653 59999999999999999988888888888999999999999999999
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEE
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (954)
+.|+. |++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+++++.+..+..+.....|.+++
T Consensus 203 ~~d~~----v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 ACDAS----AKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ETTSC----EEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eCCCc----EEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 87654 99999999999999999877 89999999999999999999999999999998888876555455799999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccccccc
Q 002196 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (954)
Q Consensus 650 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (954)
|+|+|++|++|+.||.|++||+.++ .....+.
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~----------------------------------------------- 309 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA----------------------------------------------- 309 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-----------------------------------------------
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC-cEeeEee-----------------------------------------------
Confidence 9999999999999999999998776 2322222
Q ss_pred CCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 730 ~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
+|...|.+++|+|+|.+|++++.||.|++|+
T Consensus 310 --------------------------------------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 --------------------------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------------------------------------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2677899999999999999999999999995
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.3e-39 Score=343.12 Aligned_cols=299 Identities=18% Similarity=0.247 Sum_probs=256.1
Q ss_pred eEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 349 ~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+..++. |.+.|++++|+|++..+|++|+.|++|++|++.+........ ...+.+|...|.+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--------------VRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE--------------EEEEECCSSCEEEEEEC
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc--------------ceEEeCCcccEEEEEEC
Confidence 444555 999999999999875599999999999999987543221111 11267899999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ +.++..+.+|.
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~ 148 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHN 148 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccC
Confidence 999999999999999999999988666 7889999999999999999 79999999999999985 66788899999
Q ss_pred CCeEEEeeeccC----CccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 508 SPVYSICPHHKE----NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 508 ~~v~~~~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
..|.++.+.|.. ++..+++++.|+.|++||+++......+..|...|.+++|+|+|++|++++.|+ .|++||
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~i~iwd 224 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG----EIMLWN 224 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC----EEEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEE
Confidence 999999998753 345899999999999999998888888888999999999999999999998644 599999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC------CCCCCcceEEECCCCCEE
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPCIRFNKEGILL 657 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~~l 657 (954)
+.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+ .+...+.+++|+|+|++|
T Consensus 225 ~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 225 LAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp TTTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred CCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 99999998888653 79999999999999888765 5999999988777776532 123467899999999999
Q ss_pred EEEeCCCcEEEEEccCC
Q 002196 658 AVSTNDNGIKILANADG 674 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~ 674 (954)
++|+.||.|++||+.++
T Consensus 302 ~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 302 FAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTSCEEEEEEEEC
T ss_pred EEeecCceEEEEEEeec
Confidence 99999999999998764
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-39 Score=357.79 Aligned_cols=302 Identities=16% Similarity=0.274 Sum_probs=260.9
Q ss_pred cceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
..+.+++. |.+.|++++|+|+++ +|++|+.||+|+|||+.+++.... +..|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 34566666 999999999999998 789999999999999999877654 567999999999
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCcc----eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
|+|+|++|++|+.|+.+++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975321 1122357899999999999998654 59999999999999999999988
Q ss_pred Ee-----ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC-CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 502 IF-----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 502 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
.+ .+|...|.++++++. ++.++++|+.|++|++||++. ......+..|...|.+++|+|++++|++++.|+.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~- 272 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT- 272 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-
Confidence 87 679999999999763 337999999999999999984 4556677888889999999999999999987654
Q ss_pred ceEEEEEeCCCCeEEEEEecCCC------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec--CCCCCCcce
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGK------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA--DGGLQASPC 647 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 647 (954)
|++||++++..+..+..+.. ..+.+++|+|+|+++++|+.||.|++||..+++.+..+.. ..|...|.+
T Consensus 273 ---i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 273 ---CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp ---EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred ---EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999888866432 1378999999999999999999999999999988877732 245778999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 648 IRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 648 v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++|+|+|.+|++|+.||.|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-39 Score=352.21 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=238.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEc------CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.|...|++++|||||+ +||+|+. |+.|++|+..++..... ......+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~---------------~~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNES---------------LCTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGG---------------GCSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCccee---------------EecccCCCCCCEEEEEEc
Confidence 4899999999999999 7889987 67788888877654321 111134688999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceee-eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 506 (954)
|++++ ++++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|
T Consensus 104 ~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 99865 5678999999999998765432 123458999999999999999 7999999999999999999999999999
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--CCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEe
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd 583 (954)
...|.+++|+++++ .++++++.||.|++||+++.+...... .+...+.+++|+|++ .++++++.++ .|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~----~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG----NVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS----CEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc----ceeEEE
Confidence 99999999988764 579999999999999999877665543 345579999999985 5677776544 499999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC-CCCEEEEEe
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVST 661 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~ 661 (954)
+++++.+..+.+|.. .|.+++|+|++ ++|++|+.||+|+|||+++++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999998877 89999999987 57889999999999999999887665 3467899999998 899999999
Q ss_pred CCCcEEEEEccCC
Q 002196 662 NDNGIKILANADG 674 (954)
Q Consensus 662 ~dg~i~iwd~~~~ 674 (954)
.||.|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=357.34 Aligned_cols=308 Identities=14% Similarity=0.207 Sum_probs=251.3
Q ss_pred cceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeC----CCCceeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEV----GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
...+....|.+.|++++|+|+|+.+|++|+.||.|++||+ .+++....... ...+... ........+|.+.|+
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~v~ 112 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRHP--FALSASSGKTTNQVT 112 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEECC--CCCC------CBCEE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-ccccccc--ccccccccCCCCceE
Confidence 3444555688999999999999867889999999999999 88773110000 0000000 000001234788999
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 502 (954)
+++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..
T Consensus 113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999 4455444 6788999999999999999 799999999999999999999999
Q ss_pred eccCCCC---------------eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEE
Q 002196 503 FEGHESP---------------VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 503 ~~~~~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
+..+... +.+++|+++ ..+++++.||.|++||+++......+..+...+.+++|+|++++|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9888777 889999875 4699999999999999999888888888888999999999999999
Q ss_pred EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
+++.++. |++||+.+++.+..+..|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+ ...|.+
T Consensus 264 ~~~~d~~----i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~ 335 (425)
T 1r5m_A 264 SASDDGT----LRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFA 335 (425)
T ss_dssp EEETTSC----EEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEE
T ss_pred EEcCCCE----EEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEE
Confidence 9986554 99999999998888888776 89999999999 9999999999999999999999988865 558999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 648 IRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 648 v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999999999999999999766
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=342.81 Aligned_cols=302 Identities=17% Similarity=0.263 Sum_probs=248.7
Q ss_pred ceEEEec-CCC-CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 348 TVVMTLN-QGS-AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 348 ~~~~~~~-h~~-~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
.++.++. |.+ .|++++|+|+|+ +||+|+.||+|+|||+.++...... ....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEEE
Confidence 4556665 776 999999999999 7899999999999999887543211 11468999999999
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc---eEEE
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQYI 502 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~ 502 (954)
|+|+|++|++|+.|++|++|++..+.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 23336889999999999999999 79999999999999998763 4667
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
+.+|...|.+++|+|++ .+|++++.|+.|++||.+.... ...+..|...|.+++|+|+|++|++++.|+. |+
T Consensus 146 ~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~----v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT----VR 219 (345)
T ss_dssp ECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC----EE
T ss_pred ecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe----EE
Confidence 88999999999999876 7999999999999999987653 3456778889999999999999999987654 99
Q ss_pred EEeCCC---------------CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc----eeEEE---ec
Q 002196 581 EWNESE---------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN----LLASI---DA 638 (954)
Q Consensus 581 iwd~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~~ 638 (954)
+||... ..++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. ....+ ..
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 999632 134556666455589999999999999999999999999987542 11111 12
Q ss_pred CCCCCCcceEEECCCC-CEEEEEeCCCcEEEEEccCCC
Q 002196 639 DGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGI 675 (954)
Q Consensus 639 ~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~~ 675 (954)
..|...|++++|+|++ .+||+++.||.|++|++.+++
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 2457789999999987 599999999999999998873
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=344.58 Aligned_cols=297 Identities=13% Similarity=0.122 Sum_probs=238.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCc-cccccccCCCCCCeEEEEEccCCCEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM-PLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
|...|.+++|+|||+ +|++++ |+++++||... .+|+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 566799999999999 677766 77888887321 1221111000 00111123467889999999985 68
Q ss_pred EEEEcCCEEEEEEeeCCcceeee-eeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
++|+.||+|+|||+.+++..... ..+.+|.+.|++++|+|+++ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24568999999999999999 7999999999999999999999999999999999
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--CCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEeCCCCeE
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAV 589 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~ 589 (954)
++|++++. .++++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++.| +.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d----g~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN----GTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT----SEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC----CcEEEEECCCCcE
Confidence 99998764 588999999999999999888776654 345578999999964 567777654 4599999999999
Q ss_pred EEEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC-EEEEEeCCCcEE
Q 002196 590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIK 667 (954)
Q Consensus 590 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~ 667 (954)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+.+++.+. +. +|...|++++|+|+++ +|++++.||+|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999887 89999999998 578999999999999999987654 44 4467899999999885 678999999999
Q ss_pred EEEccCC
Q 002196 668 ILANADG 674 (954)
Q Consensus 668 iwd~~~~ 674 (954)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.5e-38 Score=336.20 Aligned_cols=288 Identities=16% Similarity=0.179 Sum_probs=250.2
Q ss_pred ceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeE
Q 002196 543 SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (954)
Q Consensus 543 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 622 (954)
....+..|...|.+++|+|++++|++++.|+ .|++||+.++..+..+..|.. .+.+++|+|++++|++|+.|+.|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg----~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSG----RVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTS----EEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCC----cEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCCCEE
Confidence 3455677888999999999999999998654 599999999999999998876 89999999999999999999999
Q ss_pred EEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCcc
Q 002196 623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAI 702 (954)
Q Consensus 623 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 702 (954)
++||+.+++.+..+..| ...|.+++|+|++++|++++.||.|++||+.++......+.
T Consensus 80 ~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-------------------- 137 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-------------------- 137 (304)
T ss_dssp EEEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC--------------------
T ss_pred EEEECCCCcEEEEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc--------------------
Confidence 99999999999999866 66899999999999999999999999999876633322221
Q ss_pred ccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEE
Q 002196 703 GTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRL 782 (954)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 782 (954)
+|...|.++
T Consensus 138 -----------------------------------------------------------------------~h~~~v~~v 146 (304)
T 2ynn_A 138 -----------------------------------------------------------------------GHEHFVMCV 146 (304)
T ss_dssp -----------------------------------------------------------------------CCCSCEEEE
T ss_pred -----------------------------------------------------------------------ccCCcEEEE
Confidence 266789999
Q ss_pred EEec-CCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEecc--CCCeEE
Q 002196 783 IYTN-SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK--NDSYVM 859 (954)
Q Consensus 783 ~~sp-dg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~la 859 (954)
+|+| ++..|++++.|++|++||+.... .......+ +...+..++|+| ++++|+
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~----------------------~~~~~~~~--~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQST----------------------PNFTLTTG--QERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSS----------------------CSEEEECC--CTTCEEEEEECCSTTCCEEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCC----------------------ccceeccC--CcCcEEEEEEEEcCCCCEEE
Confidence 9999 67899999999999999875321 11111112 667888999986 788999
Q ss_pred Eec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecC
Q 002196 860 SAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938 (954)
Q Consensus 860 ~~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 938 (954)
+++ |++|++||+.+++++.++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++.++..|...+++++|+|+
T Consensus 203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 999 99999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred CC--eEEEecCCcceec
Q 002196 939 LN--VLVSSGADSQVRN 953 (954)
Q Consensus 939 g~--~l~s~s~Dg~I~i 953 (954)
+. ++++|+.||.+.+
T Consensus 282 ~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 282 GRKNYIASGFDNGFTVL 298 (304)
T ss_dssp CGGGCEEEEETTEEEEE
T ss_pred CCceEEEEecCCceEEE
Confidence 85 6899999987754
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=354.19 Aligned_cols=348 Identities=13% Similarity=0.179 Sum_probs=276.6
Q ss_pred CCCCCCeEEEEEccCCC-EEEEEEcCCEEEEEEe----eCCccee---eeeeeec----------ccCCEEEEEEecCCC
Q 002196 415 SDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTY----HGGDELR---NHLEIEA----------HVGSVNDLAFSYPNK 476 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~-~l~s~~~dg~i~iwd~----~~~~~~~---~~~~~~~----------h~~~v~~~~~s~~~~ 476 (954)
..|.+.|.+++|+|+|+ +||+|+.||.|++|++ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34679999999999999 9999999999999999 8776200 1112222 678999999999999
Q ss_pred ceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCc---
Q 002196 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS--- 553 (954)
Q Consensus 477 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--- 553 (954)
+|++++.||.|++|| .+++.+..+.+|...|.+++|++++ .+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG--THIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS--SEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC--CEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 799999999999999 7888999999999999999998865 79999999999999999988777777666555
Q ss_pred ------------eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCe
Q 002196 554 ------------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (954)
Q Consensus 554 ------------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 621 (954)
+.+++|+|++. +++++.++ .|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g----~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPGPKG----AIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEECGGG----CEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEcCCC----eEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCE
Confidence 89999999865 66666544 499999999998888888776 8999999999999999999999
Q ss_pred EEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCc
Q 002196 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701 (954)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 701 (954)
|++||+.+++.+..+..+ ...|.+++|+|++ ++++++.||.|++||+.++ +....+..
T Consensus 271 i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~------------------ 328 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIV------------------ 328 (425)
T ss_dssp EEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEEC------------------
T ss_pred EEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEeccc------------------
Confidence 999999999998888755 5689999999999 9999999999999999876 33322211
Q ss_pred cccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEE
Q 002196 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 781 (954)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 781 (954)
|...|.+
T Consensus 329 -------------------------------------------------------------------------~~~~i~~ 335 (425)
T 1r5m_A 329 -------------------------------------------------------------------------DGVPIFA 335 (425)
T ss_dssp -------------------------------------------------------------------------TTCCEEE
T ss_pred -------------------------------------------------------------------------CCccEEE
Confidence 4567888
Q ss_pred EEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEe
Q 002196 782 LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 861 (954)
Q Consensus 782 ~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 861 (954)
++|+|++++|++++.||.|++|++... ......+ . ..
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~----------------------~~~~~~~------------~---------~~ 372 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKL----------------------NSKSRSL------------Y---------GN 372 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHH----------------------HC-----------------------------
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC----------------------ccceeee------------e---------cc
Confidence 999999999999999999999976521 1000000 0 00
Q ss_pred cCCeEEEEEcccccEEEeeCCCCC--CeeEEEecCCCCceEEEEecCccEEEEecc
Q 002196 862 SGGKISLFNMMTFKTMTTFMPPPP--AATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 862 sdg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~sp~d~~~lasgs~dg~i~iwd~~ 915 (954)
.++. +.....+.+..+.+|.. .|++++|+| ++++|++|+.||.|++||++
T Consensus 373 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred cccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 1222 23334567788898976 999999999 99999999999999999986
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-37 Score=339.07 Aligned_cols=287 Identities=15% Similarity=0.208 Sum_probs=254.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|.+.|++++|+|++++|++|+.||+|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999998877555 6777899999999999999 799999999999999
Q ss_pred CCCC------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECC--CCCE
Q 002196 494 AVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGAR 565 (954)
Q Consensus 494 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~ 565 (954)
+... .....+.+|...|.+++|++++ ..+++++.|++|++||+++.+....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 3456778899999999998766 6899999999999999999988888999999999999987 5789
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
|++++.|+. |++||+++++.+..+.+|.. .|.+++|+|++.+|++++.|++|++||+++++.+..+..+.....+
T Consensus 213 l~sgs~Dg~----v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGCDKK----AMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEETTSC----EEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeCCCe----EEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999987654 99999999999999998877 8999999999999999999999999999998888777655545578
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccc
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (954)
.+++|+|++++|++++.|+.|++||+.++ ..+..+.
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~------------------------------------------- 323 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILF------------------------------------------- 323 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEEC-------------------------------------------
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEE-------------------------------------------
Confidence 89999999999999999999999999776 2222221
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 726 ~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
+|...|.+++|+|||++|++++.||+|++|+
T Consensus 324 ------------------------------------------------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 ------------------------------------------------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ------------------------------------------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ------------------------------------------------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 2677899999999999999999999999995
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-38 Score=340.35 Aligned_cols=212 Identities=16% Similarity=0.236 Sum_probs=176.0
Q ss_pred cCCCCC-CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 414 SSDYTA-SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 414 ~~~h~~-~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW 88 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence 567887 999999999999999999999999999998764433333468999999999999999 79999999999999
Q ss_pred ECCCC--ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 493 DAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 493 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
|+.++ +++..+.+|...|.+++|+|++ ++|++++.|+.|++||++.....
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--~~l~s~s~D~~v~iwd~~~~~~~-------------------------- 140 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAPSG--NLLATCSRDKSVWVWEVDEEDEY-------------------------- 140 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEECTTSCE--------------------------
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeCCC--CEEEEEECCCeEEEEECCCCCCe--------------------------
Confidence 98876 4577889999999999998765 79999999999999987642110
Q ss_pred eCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEE
Q 002196 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (954)
..+..+.+|.. .|.+++|+|++.+|++++.|+.|++||..+++........+|...|.+++|
T Consensus 141 -----------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 141 -----------------ECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202 (345)
T ss_dssp -----------------EEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred -----------------EEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence 11223445555 799999999999999999999999999988764433333344778999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccC
Q 002196 651 NKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
+|+|++|++++.|+.|++|+...
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEecccc
Confidence 99999999999999999998643
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-38 Score=349.65 Aligned_cols=295 Identities=16% Similarity=0.220 Sum_probs=253.1
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+..|...|.+++|+|+++ ++++|+.|+.+++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 68899999999999999999999999999999999887665 7889999999999999999 799999999999999
Q ss_pred CCCCc-------eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-----eCCCCceEEEEECC
Q 002196 494 AVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMAYSA 561 (954)
Q Consensus 494 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~ 561 (954)
+.+.. ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988654 57999999999999999998877665 45667899999987
Q ss_pred -CCCEEEEEEeCCCCceEEEEEeCC-CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 562 -DGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 562 -~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
++.++++++.|+. |++||++ .+..+..+.+|.. .|.+++|+|++++|++++.||+|++||+++++.+..+..+
T Consensus 216 ~~~~~l~sgs~D~~----v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSCDTT----VRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEETTSC----EEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEECCCe----EEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8889999987654 9999998 4577888888877 8999999999999999999999999999999998888654
Q ss_pred CC-----CCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccc
Q 002196 640 GG-----LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714 (954)
Q Consensus 640 ~~-----~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (954)
.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+..
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~------------------------------- 338 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGT------------------------------- 338 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECC-------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEec-------------------------------
Confidence 21 234899999999999999999999999998776 22222210
Q ss_pred cccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEe
Q 002196 715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (954)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 794 (954)
...+|...|.+++|+|||.+|+++
T Consensus 339 --------------------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 339 --------------------------------------------------------LQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp --------------------------------------------------------SCSSCCCCCCEEEECSSSSEEEEE
T ss_pred --------------------------------------------------------ccCCCCCceEEEEECCCCCEEEEe
Confidence 012377889999999999999999
Q ss_pred ecCCeEEEeeccC
Q 002196 795 ASNAVHKLWKWPR 807 (954)
Q Consensus 795 ~~dg~v~lw~~~~ 807 (954)
+.||+|++|++..
T Consensus 363 s~D~~i~iW~~~~ 375 (380)
T 3iz6_a 363 SWDKNLKIWAFSG 375 (380)
T ss_dssp CTTSCEEEEECCS
T ss_pred eCCCCEEEEecCC
Confidence 9999999998763
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.9e-37 Score=328.77 Aligned_cols=291 Identities=18% Similarity=0.306 Sum_probs=255.2
Q ss_pred eEEEe-cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 349 VVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 349 ~~~~~-~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+..++ +|.+.|++++|+|+++ +|++|+.||.|++|++.+++.... +.+|...|.+++|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~~ 74 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAWS 74 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred eEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEEc
Confidence 34444 4999999999999999 789999999999999998876653 57899999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+++++.+..+..|.
T Consensus 75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 75 SDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 999999999999999999999987665 6889999999999999999 79999999999999999999999999999
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 586 (954)
.+|.+++|++++ .++++++.||.|++||+++......+. .+...+..++|+|+++++++++.++ .|++||+++
T Consensus 150 ~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~ 223 (312)
T 4ery_A 150 DPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN----TLKLWDYSK 223 (312)
T ss_dssp SCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT----EEEEEETTT
T ss_pred CcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC----eEEEEECCC
Confidence 999999998765 799999999999999999877666543 3455799999999999999988644 599999999
Q ss_pred CeEEEEEecCCCCC--eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEe--C
Q 002196 587 GAVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--N 662 (954)
Q Consensus 587 ~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~--~ 662 (954)
++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..| ...|.+++|+|++.++++++ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENIIASAALEN 301 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTT
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccC
Confidence 99999998876521 222233467889999999999999999999999998866 56899999999999999987 6
Q ss_pred CCcEEEEEcc
Q 002196 663 DNGIKILANA 672 (954)
Q Consensus 663 dg~i~iwd~~ 672 (954)
|+.|++|+..
T Consensus 302 d~~i~~W~~d 311 (312)
T 4ery_A 302 DKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEECC
T ss_pred CccEEEecCC
Confidence 9999999864
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-39 Score=360.68 Aligned_cols=298 Identities=15% Similarity=0.246 Sum_probs=248.9
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEE----------EcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVG----------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
+.+...|.+++|+|+|+.++++| +.||.|+|||+.+++.... .....|...|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~ 71 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFN 71 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEE
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceE
Confidence 33445789999999998789999 8899999999998753210 01235889999
Q ss_pred EEEEccCCCEEEEEEcCCEEEEEEeeCCcc-eeeeeeeecccCCEEEEEEecC-CCceEEEEEcCCCeEEEEECCCCc--
Q 002196 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT-- 498 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~-~~~~~l~s~~~dg~i~iwd~~~~~-- 498 (954)
+++|+|++++|++|+.||.|++|++.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence 999999999999999999999999987211 1122367889999999999998 56 69999999999999999886
Q ss_pred ----eEE---EeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC------CCceEEEEECCCC-C
Q 002196 499 ----KQY---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADG-A 564 (954)
Q Consensus 499 ----~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g-~ 564 (954)
... .+..|...|.+++|++++. .++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred cccccccccccccCCCCCeeEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 333 3467999999999998632 79999999999999999998877777666 6789999999997 5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCC-eEEEEEe-cCCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCCceeEEEecCCC
Q 002196 565 RLFSCGTNKEGESYLVEWNESEG-AVKRTYH-GLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 641 (954)
++++++.++ .+..|++||++++ ..+..+. +|.. .+.+++|+| ++.+|++++.||.|++||+.+++.+..+..|
T Consensus 229 ~l~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-- 304 (416)
T 2pm9_A 229 RVATATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-- 304 (416)
T ss_dssp EEEEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS--
T ss_pred EEEEEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC--
Confidence 777777543 1225999999986 5666676 6665 899999999 8999999999999999999999999999866
Q ss_pred CCCcceEEECCCC-CEEEEEeCCCcEEEEEccCC
Q 002196 642 LQASPCIRFNKEG-ILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 642 ~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~ 674 (954)
...|.+++|+|++ .+|++++.||.|++|++.+.
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 5689999999998 89999999999999999876
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.2e-37 Score=327.54 Aligned_cols=296 Identities=17% Similarity=0.273 Sum_probs=251.5
Q ss_pred cCCCCCCeEEEEEccCC-CEEEEEEcCCEEEEEEeeCCcc--eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 414 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ ++++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 68999999999999965 8999999999999999975332 123346889999999999999999 799999999999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCC------CC
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD------GA 564 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------g~ 564 (954)
+||+.+++.+..+.+|...|.+++|++++ .++++++.|++|++||++. .....+..|...+.++.|+|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998765 7999999999999999974 556667778889999999985 44
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCC
Q 002196 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
.+++++.++. |++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~d~~----i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGNDKM----VKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEETTSC----EEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeCCCE----EEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888887554 99999999999999999877 8999999999999999999999999999999999888753 47
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccc
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAA 724 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (954)
|.+++|+|++.+|++++.+ .+++|++..+ .....+..+...
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------------------------------------- 280 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------------------------------------- 280 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT-------------------------------------
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc-------------------------------------
Confidence 9999999999999988765 5999998765 333333211000
Q ss_pred cccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEee
Q 002196 725 AMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (954)
Q Consensus 725 ~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~ 804 (954)
....+...+.+++|+|||++|++++.||.|++|+
T Consensus 281 ----------------------------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 281 ----------------------------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ----------------------------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----------------------------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 0011456788999999999999999999999999
Q ss_pred ccC
Q 002196 805 WPR 807 (954)
Q Consensus 805 ~~~ 807 (954)
+.+
T Consensus 315 ~~t 317 (319)
T 3frx_A 315 VMT 317 (319)
T ss_dssp EEE
T ss_pred Eee
Confidence 763
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-37 Score=341.38 Aligned_cols=309 Identities=17% Similarity=0.244 Sum_probs=249.9
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.+...+.|.+.|++++|||||+ +||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEEC
Confidence 4556678999999999999999 677775 789999999999876531100000 0000000000111244469999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
|||++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||++++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999887665 6889999999999999999 69999999999999999999888876 56
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-------eCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
..+.++++++. ++.++++++.|+.|++||+++......+ ..|...|.+++|+|+|++|++++.|+ .|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~----~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC----EEE
Confidence 77999999873 3479999999999999999987765554 45667899999999999999998654 599
Q ss_pred EEeCCCC------------eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceE
Q 002196 581 EWNESEG------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (954)
Q Consensus 581 iwd~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (954)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.||.|++||+.+++.+..+.+| ...|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEEEE
Confidence 9998753 34566777776 8999999999999999999999999999999999998866 5689999
Q ss_pred EECC------CCCEEEEEeCCCcEEEEEccC
Q 002196 649 RFNK------EGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 649 ~~s~------~~~~l~s~~~dg~i~iwd~~~ 673 (954)
+|++ ++.+|++|+.||.|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9886 688999999999999999864
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=334.79 Aligned_cols=281 Identities=14% Similarity=0.131 Sum_probs=233.7
Q ss_pred cceeeeeeCCCCCcceeecCCCC------------------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEE
Q 002196 323 VNILPVAYTPQSLGQSSYSTDDL------------------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW 384 (954)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~~------------------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iw 384 (954)
.+|.+++|+|||+.+++.+.+.. ...+...+.|...|.+++|+|++. +++|+.||+|+||
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG--ILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE--EEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe--EEEEECCCEEEEE
Confidence 45779999999999998873221 112233344667899999999974 6799999999999
Q ss_pred eCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccC
Q 002196 385 EVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG 464 (954)
Q Consensus 385 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 464 (954)
|+.+++....... .+.+|.+.|++++|+|||++|++|+.|++|++||+.+++.+. .+.+|.+
T Consensus 109 d~~~~~~~~~~~~---------------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~---~~~~h~~ 170 (344)
T 4gqb_B 109 ELDENETLIVSKF---------------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS---SYRAHAA 170 (344)
T ss_dssp EECTTSSCEEEEE---------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSS
T ss_pred eccCCCceeEeec---------------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE---EEcCcCC
Confidence 9999876654222 145899999999999999999999999999999999988766 7889999
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec--cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG 542 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 542 (954)
.|.+++|+|++.. ++++++.|++|++||+++++....+. .|...+.+++|++... .++++|+.||.|++||+++.+
T Consensus 171 ~V~~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 171 QVTCVAASPHKDS-VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS-EVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp CEEEEEECSSCTT-EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT-TEEEEEETTSEEEEEESCC--
T ss_pred ceEEEEecCCCCC-ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC-cceEEeccCCcEEEEECCCCc
Confidence 9999999999976 68999999999999999999888775 4556789999987543 789999999999999999999
Q ss_pred ceeEeeCCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCC
Q 002196 543 SRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEF 620 (954)
Q Consensus 543 ~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg 620 (954)
....+..|...|++++|+|++ ++|++++.|+. |++||..++++. .+.+|.. .|.+++|+|++. +|++++.||
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~----i~vwd~~~~~~~-~~~~H~~-~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS----LAVLDSSLSELF-RSQAHRD-FVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC----EEEECTTCCEEE-EECCCSS-CEEEEEECSSSTTEEEEEETTS
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe----EEEEECCCCcEE-EEcCCCC-CEEEEEEeCCCCeEEEEEcCCC
Confidence 999999999999999999998 56888886554 999999998765 4677776 899999999986 567899999
Q ss_pred eEEEEECCCCc
Q 002196 621 MIKFWDMDNVN 631 (954)
Q Consensus 621 ~i~iwd~~~~~ 631 (954)
+|++|++.+..
T Consensus 323 ~v~~w~v~~~~ 333 (344)
T 4gqb_B 323 QVVHHVVPTEP 333 (344)
T ss_dssp CEEEEECCC--
T ss_pred eEEEEECCCCC
Confidence 99999998754
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-36 Score=328.72 Aligned_cols=319 Identities=14% Similarity=0.162 Sum_probs=268.9
Q ss_pred ccceeeeeeCCCCCcceeecCCCC--------CcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceee
Q 002196 322 SVNILPVAYTPQSLGQSSYSTDDL--------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA 393 (954)
Q Consensus 322 ~~~i~~~~~s~~g~~~~~~~~~~~--------~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~ 393 (954)
...|.+++|+|+|+.++....+.. ....+..+.|.+.|++++|+|+++ ++++|+ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 345778999999999876653321 234566678999999999999999 677887 9999999998876432
Q ss_pred eeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec
Q 002196 394 VKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473 (954)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 473 (954)
.. ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+..|...|.+++|+|
T Consensus 87 ~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 PV--------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp CS--------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred ee--------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 10 00012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCc
Q 002196 474 PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS 553 (954)
Q Consensus 474 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 553 (954)
+++ ++++++.|+.|++||+.+++.+..+..|...|.+++|++++ .++++++.||.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 998 79999999999999999999999999999999999998865 799999999999999999877666554 5668
Q ss_pred eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee
Q 002196 554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 554 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
+.+++|+|+++++++++.++. +++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~----i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSN----VEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSC----EEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcCCCc----EEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999986554 999999988764 5566655 8999999999999999999999999999999888
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
.... +...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 6553 2457999999999999999999999999996
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-37 Score=329.33 Aligned_cols=298 Identities=15% Similarity=0.212 Sum_probs=231.3
Q ss_pred ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
+++.++. |.++|++++|+|+ +|++|+.||+|++||+.++.......+ ...+|...|.+++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVAW 66 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEEE
Confidence 3455555 9999999999997 789999999999999987642211000 01249999999999
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCc----ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC----Cc
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGD----ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GT 498 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~----~~ 498 (954)
+|++++|++|+.|++|+||++.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeE
Confidence 9999999999999999999986432 1123336789999999999999999 799999999999999943 25
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC--CceeEeeCCCCceEEEEECCC--CCEEEEEEeCCC
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL--GSRVDYDAPGHSSTMMAYSAD--GARLFSCGTNKE 574 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~ 574 (954)
++..+.+|...|.+++|+|++ .+|++++.|++|++||.... .....+..|...|.+++|+|+ +..|++++.|+.
T Consensus 145 ~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp EEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred EEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 677899999999999999865 79999999999999998765 355667788889999999998 678999887554
Q ss_pred CceEEEEEeCCCC--------eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce--eEEEecCCCCC-
Q 002196 575 GESYLVEWNESEG--------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQ- 643 (954)
Q Consensus 575 ~~~~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~- 643 (954)
|++||+.++ .....+...+...|.+++|++++ +|++++.||.|++||..+++. .... ...|..
T Consensus 223 ----v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~ 296 (330)
T 2hes_X 223 ----VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVY 296 (330)
T ss_dssp ----EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTS
T ss_pred ----EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccc
Confidence 999998754 34455555334489999999765 899999999999999987742 2222 223344
Q ss_pred CcceEEECC--CCCEEEEEeCCCcEEEEEccC
Q 002196 644 ASPCIRFNK--EGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 644 ~v~~v~~s~--~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.|.+++|+| ++++|++++.||.|++|++.+
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 799999999 789999999999999999864
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.9e-37 Score=331.55 Aligned_cols=286 Identities=13% Similarity=0.154 Sum_probs=243.0
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
+.++|.+++|+|||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 567899999999999 666666666666665444322211 346999999999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeee--cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc--eEEEeccCCCCe
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEGHESPV 510 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 510 (954)
+++ ||.|++|++.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999998876544433444 7999999999999998 79999999999999999887 667788899999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
.+++|++++ .++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.++ .|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN----TVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC----cEEEEECCCCceE
Confidence 999998865 7999999999999999999888888888888999999999999999998644 5999999999988
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
..+.. .. .+.+++|+|+++++++++.+|.|++||+.+++.. .+. .+...|.+++|+|++++|++++.||.|++||
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87763 33 7999999999999999999999999999988764 333 3466899999999999999999999999999
Q ss_pred ccCC
Q 002196 671 NADG 674 (954)
Q Consensus 671 ~~~~ 674 (954)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9876
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.4e-38 Score=340.53 Aligned_cols=318 Identities=12% Similarity=0.167 Sum_probs=234.2
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc--
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-- 438 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~-- 438 (954)
.+.+.+++. ++.++.+.....|++.... ...|...|++++|||||++||+|+.
T Consensus 10 g~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d~ 64 (357)
T 4g56_B 10 GVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSLS 64 (357)
T ss_dssp -------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECSS
T ss_pred CCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCCC
Confidence 344455543 3444455667788765432 2459999999999999999999997
Q ss_pred ----CCEEEEEEeeCCcceee-eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE----EeccCCCC
Q 002196 439 ----KHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY----IFEGHESP 509 (954)
Q Consensus 439 ----dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~ 509 (954)
|+.|++|+..++..... .....+|...|++++|+|++. +++++.||+|++||+.+++... ...+|...
T Consensus 65 ~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~ 141 (357)
T 4g56_B 65 SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDDI 141 (357)
T ss_dssp SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSSC
T ss_pred CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCCC
Confidence 78899999877654322 123457889999999999986 6778899999999999886543 44579999
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCC-EEEEEEeCCCCceEEEEEeCCCCe
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
|.+++|+|++ ++|++++.|+.|++||+++......+..|...|.+++|+|++. .+++++.++ .|++||+++++
T Consensus 142 V~~v~~spdg--~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg----~v~~wd~~~~~ 215 (357)
T 4g56_B 142 VKTLSVFSDG--TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG----RILLWDTRKPK 215 (357)
T ss_dssp EEEEEECSSS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS----CEEECCTTSSS
T ss_pred EEEEEECCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC----ceEEEECCCCc
Confidence 9999998765 7999999999999999999888888888999999999999985 677777654 49999999988
Q ss_pred EEEEEecC-CCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC-CEEEEEeCCCc
Q 002196 589 VKRTYHGL-GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNG 665 (954)
Q Consensus 589 ~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~ 665 (954)
....+..+ ....+.+++|+|++ .++++|+.|+.|++||+++++.+..+..+ ...|++++|+|++ ++|++++.||.
T Consensus 216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH--SQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC--SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 77655432 23378999999975 68889999999999999999999998866 5689999999987 67999999999
Q ss_pred EEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccc
Q 002196 666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (954)
Q Consensus 666 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~ 745 (954)
|+|||+.++ ++++.+
T Consensus 294 i~iwd~~~~-~~~~~~---------------------------------------------------------------- 308 (357)
T 4g56_B 294 VAVLDADFS-EVFRDL---------------------------------------------------------------- 308 (357)
T ss_dssp EEEECTTSC-EEEEEC----------------------------------------------------------------
T ss_pred EEEEECCCC-cEeEEC----------------------------------------------------------------
Confidence 999998876 322211
Q ss_pred cccccccccccccccCCCceeEEecCCCCCccceEEEEEec-CCceEEEeecCCeEEEeeccC
Q 002196 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN-SGLAILALASNAVHKLWKWPR 807 (954)
Q Consensus 746 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg~v~lw~~~~ 807 (954)
+|...|++++|+| |+.+|++++.||+|++|+++.
T Consensus 309 ----------------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 309 ----------------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ----------------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred ----------------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 2677899999998 799999999999999999864
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-36 Score=323.31 Aligned_cols=256 Identities=18% Similarity=0.321 Sum_probs=227.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|...|++++|+|++++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887655 6789999999999999998 799999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.+++.+..+.+|...|.+++|++++ .++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++.++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999998866 7999999999999999999888888888888999999999999999998755
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC-C
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN-K 652 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~ 652 (954)
. |++||+++++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++ +
T Consensus 172 ~----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 172 L----CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp C----EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred c----EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 4 9999999999888876665558999999999999999999999999999999999988876443333334444 6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCeeEEEe
Q 002196 653 EGILLAVSTNDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 653 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 681 (954)
++.+|++++.||.|++||+.++ +.+..+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~ 275 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK-EIVQKL 275 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC-CEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCc-hhhhhh
Confidence 7899999999999999999877 444333
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-36 Score=330.72 Aligned_cols=299 Identities=18% Similarity=0.290 Sum_probs=240.3
Q ss_pred eEEEec-CCCCeeEEEE-----cC-CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCe
Q 002196 349 VVMTLN-QGSAVKSMDF-----HP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421 (954)
Q Consensus 349 ~~~~~~-h~~~V~~~~~-----sp-~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 421 (954)
+..++. |.+.|++++| ++ +++ +|++|+.|++|++||+.+++..... ......+.+|...|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCce
Confidence 344554 9999999999 77 777 8999999999999999765421100 00112367899999
Q ss_pred EEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE
Q 002196 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 422 ~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.. ....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~ 153 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKF 153 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Ccee
Confidence 999999999999999999999999999987665 6889999999999999999 699999999999999874 4444
Q ss_pred Eec---cCCCCeEEEeeeccCC--------ccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 502 IFE---GHESPVYSICPHHKEN--------IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 502 ~~~---~~~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
... +|...|.+++|+|... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|++++
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 433 7889999999988642 258999999999999994 3455566778888999999999999999998
Q ss_pred eCCCCceEEEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeE--EEecC--------
Q 002196 571 TNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--SIDAD-------- 639 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------- 639 (954)
.|+ .|++||+.. ......+.. .. .|.+++|+|++.++++ +.|+.|++||+.+++... .+...
T Consensus 233 ~dg----~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 233 KDK----KLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp TTC----EEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred CCC----eEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 644 599999943 444444432 22 6999999999987765 457889999998876544 33311
Q ss_pred -CCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 640 -GGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 640 -~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34567899999999999999999999999998764
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.7e-36 Score=325.69 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=257.5
Q ss_pred ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
.+..+|. |.+.|++++|+|++..+|+||+.||+|+|||+.+++...... ...+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~--------------~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP--------------QRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------EEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------eEEEeCCCCCEEEEEE
Confidence 4455666 999999999999865589999999999999998765432211 1236789999999999
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE-EEecc
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEG 505 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~ 505 (954)
+|+|++|++|+.|+.|++|+........ ....+...+..+.+++++. ++++++.|+.+++||+...... ..+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998876554 5667888899999999998 6899999999999998766543 45577
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
|...+..++|++.....++++++.|+.|++||+++......+..+...|.+++|+|++++|++++.|+ .|++||++
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg----~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG----QAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC----EEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC----eEEEEEec
Confidence 99999999999888778899999999999999999888888888899999999999999999998644 59999999
Q ss_pred CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec-------CCCCCCcceEEECCCCCEEE
Q 002196 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-------DGGLQASPCIRFNKEGILLA 658 (954)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~ 658 (954)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|++++|+|+|++|+
T Consensus 246 ~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 246 EGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 999999888764 799999999875 55666799999999999887776643 24567899999999999999
Q ss_pred EEeCCCcEEEEEccCCC
Q 002196 659 VSTNDNGIKILANADGI 675 (954)
Q Consensus 659 s~~~dg~i~iwd~~~~~ 675 (954)
+|+.||.|+|||+.+|.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999999883
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.3e-37 Score=342.66 Aligned_cols=283 Identities=15% Similarity=0.164 Sum_probs=237.9
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++|++|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 456899999999 678999999999999988754321 3344 4555668899999999999
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 517 (954)
.||.|++||+.+++... .+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999877654 5678999999999999999 799999999999999999999999999999999999998
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCCceeEeeCC---C---------------------CceEEEEECCCCCEEEEEEeCC
Q 002196 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---G---------------------HSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 518 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~---------------------~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
++ .+|++++.|+.|++||+++.+....+..+ . ..+.+++|+|+++++++++.++
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 65 79999999999999999988777666542 2 3344455688999999998755
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCce-eEEEecCCCCCCcceEEEC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFN 651 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 651 (954)
. |++||+++++.+..+...+...+.+++|+|++. ++++++.||.|++||+++++. +..+..+. ...|.++.+
T Consensus 270 ~----i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~- 343 (420)
T 3vl1_A 270 V----ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF- 343 (420)
T ss_dssp C----EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE-
T ss_pred e----EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe-
Confidence 4 999999999988888765555899999999998 999999999999999998754 66776532 446777755
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+++++|++++.||.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-37 Score=346.17 Aligned_cols=355 Identities=10% Similarity=0.112 Sum_probs=266.2
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeC---CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 415 ~~h~~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
.+|.+.|++++|+| ++++|++|+.||+|+|||+.+ +........+ +|...|.+++|+|+++ +|++++.||.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 77999999999999 999999999999999999987 5433222233 5999999999999998 799999999999
Q ss_pred EEECC---CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEE--ECCCCCE
Q 002196 491 VWDAV---TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA--YSADGAR 565 (954)
Q Consensus 491 iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~g~~ 565 (954)
+||+. +++....+.+| .+..+.+++.+ +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99984 67777666655 56666665532 122334444 6789999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEec--CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCC
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHG--LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
+++++.++ .|++||+++++.+..+.. |.. .|.+++|+|++.+|++|+.||.|++||+++++.+..+... +..
T Consensus 185 l~~~~~d~----~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 258 (437)
T 3gre_A 185 LVALTNLS----RVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHA 258 (437)
T ss_dssp EEEEETTS----EEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCE
T ss_pred EEEEeCCC----eEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCC
Confidence 99988644 599999999999999988 555 8999999999999999999999999999999998888632 244
Q ss_pred CcceEEEC----CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccc
Q 002196 644 ASPCIRFN----KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (954)
Q Consensus 644 ~v~~v~~s----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (954)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++...+.
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~------------------------------ 307 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPS------------------------------ 307 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCCC------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCc------------------------------
Confidence 79999665 46889999999999999999988 66666665543322
Q ss_pred ccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCe
Q 002196 720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 799 (954)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~ 799 (954)
.+.|+|+++.+ .+.
T Consensus 308 -------------------------------------------------------------~~~~~~~~~~l----~~~- 321 (437)
T 3gre_A 308 -------------------------------------------------------------MEHFLPIEKGL----EEL- 321 (437)
T ss_dssp -------------------------------------------------------------GGGGSCBCSSG----GGC-
T ss_pred -------------------------------------------------------------cceeccccccc----ccc-
Confidence 11222332211 000
Q ss_pred EEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEE
Q 002196 800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT 878 (954)
Q Consensus 800 v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~ 878 (954)
.+.+..|...|++++|+ ++++|++++ |+.|++||+.+++...
T Consensus 322 ------------------------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 322 ------------------------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp ------------------------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred ------------------------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 01112277889999999 889999999 9999999999999999
Q ss_pred eeCCCCC---CeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecC--CCeEEEecCCcceec
Q 002196 879 TFMPPPP---AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT--LNVLVSSGADSQVRN 953 (954)
Q Consensus 879 ~~~~h~~---~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d--g~~l~s~s~Dg~I~i 953 (954)
.+.+|.. .+....+++ +..+++.. |+...+........|.+.|++++|+++ +.+|+||+.||+|+|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred EEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence 9988753 356667777 55555544 444555556677789999999999998 789999999999986
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-35 Score=321.13 Aligned_cols=204 Identities=16% Similarity=0.271 Sum_probs=175.7
Q ss_pred eeeecccCCEEEEEE-----ec-CCCceEEEEEcCCCeEEEEECCCC-------ceEEEeccCCCCeEEEeeeccCCccE
Q 002196 457 LEIEAHVGSVNDLAF-----SY-PNKQLSVVTCGEDRVIKVWDAVTG-------TKQYIFEGHESPVYSICPHHKENIQF 523 (954)
Q Consensus 457 ~~~~~h~~~v~~~~~-----s~-~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~ 523 (954)
..+.+|.+.|++++| ++ +++ +|++|+.|++|++||+.++ .+...+.+|...|.+++|++++ .+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~ 90 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--CF 90 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--TE
T ss_pred eeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--CE
Confidence 368899999999999 66 777 7999999999999998753 4567889999999999998765 79
Q ss_pred EEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe---cCCCCC
Q 002196 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH---GLGKRS 600 (954)
Q Consensus 524 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~~~~~ 600 (954)
+++++.|++|++||+++......+..|...|.+++|+|++++|++++.|+. |++||+.... ..... .|.. .
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~----i~~wd~~~~~-~~~~~~~~~~~~-~ 164 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE----IKLWNILGEC-KFSSAEKENHSD-W 164 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC----EEEEESSSCE-EEECCTTTSCSS-C
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE----EEEEeccCCc-eeeeecccCCCc-e
Confidence 999999999999999998888888899999999999999999999987554 9999998443 33333 3444 8
Q ss_pred eEEEEEeCCC----------CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 601 VGVVQFDTTK----------NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 601 i~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
+.+++|+|++ .++++++.||.|++||. .......+..| ...|.+++|+|+|++|++++.||.|++||
T Consensus 165 v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9999999987 79999999999999994 55666667655 56899999999999999999999999999
Q ss_pred ccC
Q 002196 671 NAD 673 (954)
Q Consensus 671 ~~~ 673 (954)
+.+
T Consensus 242 ~~~ 244 (343)
T 2xzm_R 242 ILN 244 (343)
T ss_dssp SSC
T ss_pred CCC
Confidence 843
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=346.16 Aligned_cols=325 Identities=14% Similarity=0.187 Sum_probs=269.6
Q ss_pred cceeeeeeCCCCC-cceee----------cCCCC-------Cc---ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeE
Q 002196 323 VNILPVAYTPQSL-GQSSY----------STDDL-------PK---TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDV 381 (954)
Q Consensus 323 ~~i~~~~~s~~g~-~~~~~----------~~~~~-------~~---~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i 381 (954)
..|.+++|+|+|+ ++++. +.|.. .. ..+..+.|...|++++|+|+++ +|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeE
Confidence 3567899999987 77777 44432 11 2455567899999999999999 78999999999
Q ss_pred EEEeCCCC----ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCc-----
Q 002196 382 MLWEVGSR----ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGD----- 451 (954)
Q Consensus 382 ~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~----- 451 (954)
++||+.+. +... .+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++
T Consensus 92 ~vw~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 92 ELYSTNEANNAINSMA-------------------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp EEECCSSTTSCCCEEE-------------------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred EEeecccccccccchh-------------------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence 99999872 2332 26789999999999998 8999999999999999999876
Q ss_pred -ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccC------CCCeEEEeeeccCCccEE
Q 002196 452 -ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH------ESPVYSICPHHKENIQFI 524 (954)
Q Consensus 452 -~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l 524 (954)
.......+..|...|.+++|+|++.. ++++++.|+.|++||+++++.+..+..| ...|.+++|++++. .++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l 230 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSLAH-VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-TRV 230 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSCTT-EEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT-TEE
T ss_pred ccccccccccCCCCCeeEEEeCCCCCc-EEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC-CEE
Confidence 33322245679999999999999444 7999999999999999999999998876 78899999998753 689
Q ss_pred EEEecCC---eEEEEeCCCC-CceeEee-CCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC
Q 002196 525 FSTATDG---KIKAWLYDNL-GSRVDYD-APGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598 (954)
Q Consensus 525 ~s~s~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 598 (954)
++++.|+ .|++||+++. .....+. .+...+.+++|+| ++++|++++.++ .|++||+++++.+..+..|..
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg----~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN----TVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS----EEEEECSSSCCEEEEEECSSS
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC----CEEEeeCCCCccceeecCCCC
Confidence 9999999 9999999986 4445555 6788999999999 899999998644 599999999999999998877
Q ss_pred CCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEec--------------------C-------------CCCCC
Q 002196 599 RSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDA--------------------D-------------GGLQA 644 (954)
Q Consensus 599 ~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~-------------~~~~~ 644 (954)
.+.+++|+|++ .++++++.||.|++||+.++........ + .+...
T Consensus 307 -~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 307 -WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp -CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred -ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence 89999999999 8999999999999999987653321100 0 03456
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.+++|+|+|++|++++.||.|++|++.+.
T Consensus 386 ~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 386 SPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 789999999999999999999999998764
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8e-35 Score=322.54 Aligned_cols=252 Identities=19% Similarity=0.312 Sum_probs=211.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeeccc------------------CCEEEEEEecCCCc
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV------------------GSVNDLAFSYPNKQ 477 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~~~~~ 477 (954)
+|...|.+++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999976 7889999999887655 333332 2499999999999
Q ss_pred eEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEE
Q 002196 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (954)
Q Consensus 478 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 557 (954)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++++ .+|++++.|++|++||+++......+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC--CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 79999999999999999999999999999999999998866 799999999999999999877666555 45579999
Q ss_pred EECC-CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE-------ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 558 AYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTY-------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 558 ~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+|+| +++++++++.++. |++||++++..+..+ .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~d~~----v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRA----VRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEETTSC----EEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcCCCc----EEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999987554 999999999888776 34554 899999999999999999999999999976
Q ss_pred Cc------------eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccc
Q 002196 630 VN------------LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESR 684 (954)
Q Consensus 630 ~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 684 (954)
.. +...+..| ...|.+++|+|++.+|++++.||.|++||..++ ..+..+.+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h 351 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGH 351 (393)
T ss_dssp -------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECC
T ss_pred CCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCC
Confidence 32 33444444 668999999999999999999999999999887 444444443
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.5e-36 Score=334.42 Aligned_cols=347 Identities=12% Similarity=0.077 Sum_probs=278.1
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 445689999999999999999999999998876554 34445 4455567899998 79999999999999999999
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
....+.+|...|.+++|++++ .+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~---- 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT---- 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSC----
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc----
Confidence 999989999999999999865 79999999999999999998888888889999999999999999999987554
Q ss_pred EEEEeCCCCeEEEEEecC--CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCE
Q 002196 579 LVEWNESEGAVKRTYHGL--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 656 (954)
|++||+++++.+..+..+ ....+.++++.|.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 999999999999998764 23367788877654321 011 12457889999999999
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCC
Q 002196 657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (954)
Q Consensus 657 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (954)
|++++.||.|++||+.++. ....+.
T Consensus 262 l~~~~~dg~i~i~d~~~~~-~~~~~~------------------------------------------------------ 286 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKE-QTIQLP------------------------------------------------------ 286 (420)
T ss_dssp EEEEETTSCEEEEETTTCC-EEEEEC------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCc-eeEEcc------------------------------------------------------
Confidence 9999999999999998773 221110
Q ss_pred CCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCc-eEEEeecCCeEEEeeccCCCCCCCCc
Q 002196 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL-AILALASNAVHKLWKWPRNERNSTGK 815 (954)
Q Consensus 737 ~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~dg~v~lw~~~~~~~~~~g~ 815 (954)
..|...|.+++|+|++. +|++++.||.|++||+.....
T Consensus 287 ------------------------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----- 325 (420)
T 3vl1_A 287 ------------------------------------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----- 325 (420)
T ss_dssp ------------------------------------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----
T ss_pred ------------------------------------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-----
Confidence 01567899999999999 999999999999998763211
Q ss_pred ccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccc---------cEEEeeCCCCC
Q 002196 816 ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---------KTMTTFMPPPP 885 (954)
Q Consensus 816 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~---------~~~~~~~~h~~ 885 (954)
++.. +.+ .|...+.++. ++++++|++++ |+.|++||+... .....+.+|.+
T Consensus 326 ----------------~~~~-~~~-~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 326 ----------------PVGE-FLI-NEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp ----------------CSEE-EEE-STTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred ----------------chhh-hhc-cCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 1111 111 1566777775 56888999998 999999998763 22334567889
Q ss_pred CeeEEEecCCCCc---eEEEEecCccEEEEeccc
Q 002196 886 AATFLAFHPQDNN---IIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 886 ~v~~l~~sp~d~~---~lasgs~dg~i~iwd~~~ 916 (954)
.|.+++|+| ++. .|++++.+|.+.+|+++.
T Consensus 387 ~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 387 AVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred ceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence 999999999 887 666677789999999864
No 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=345.40 Aligned_cols=350 Identities=7% Similarity=0.007 Sum_probs=246.9
Q ss_pred CCCCeEEEEEccCC---------CEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC
Q 002196 417 YTASVNRVMWSPDG---------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (954)
Q Consensus 417 h~~~V~~l~~spdg---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg 487 (954)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56899999999987 799999866420 01368888 689999999
Q ss_pred eEEEEECCCCceE----EEeccCCCCeEEEeeecc----CCccEEEEEecCCeEEEEeCCCCCc-----------eeEee
Q 002196 488 VIKVWDAVTGTKQ----YIFEGHESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGS-----------RVDYD 548 (954)
Q Consensus 488 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~ 548 (954)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 446778899999999986 3457999999999999999976542 12456
Q ss_pred CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe-EEEEEecCCCCCeEEE--EEeCCC-CEEEEEECCCeEEE
Q 002196 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVV--QFDTTK-NRFLAAGDEFMIKF 624 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i 624 (954)
.+...|.+++|++++ .|++++.|+ .|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|+|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~Dg----tV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFKNG----FVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEETTS----EEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeCCC----EEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 677899999999865 788887644 59999999763 4456788876 89998 578887 89999999999999
Q ss_pred EECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCcccc
Q 002196 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (954)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 704 (954)
||+++++.+..+..+.....|.+++|+|+++.+++++.|+.|++||+.++ .+...+.
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~---------------------- 394 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLV---------------------- 394 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEE----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeee----------------------
Confidence 99999887777765533335889999999999999999999999998776 2211111
Q ss_pred ccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEE
Q 002196 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (954)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 784 (954)
+|...|.+++|
T Consensus 395 ---------------------------------------------------------------------gH~~~V~sva~ 405 (524)
T 2j04_B 395 ---------------------------------------------------------------------SRETTITAIGV 405 (524)
T ss_dssp ---------------------------------------------------------------------ECSSCEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCceEEEEe
Confidence 26788999999
Q ss_pred ecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCC
Q 002196 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG 864 (954)
Q Consensus 785 spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg 864 (954)
+|+|+.|++++.||+|++|++.... +....+. ....+...+.+++|+|+|+.+.. . +
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~~---------------~~~~~~~------~~~~~~~~v~~v~~sp~g~~~~~-~-~ 462 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARRL---------------LHGIKNS------SATQKSLRLWKWDYSIKDDKYRI-D-S 462 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSST---------------TTCC------------CCCCEEEECBCCSSSCEEEE-C-C
T ss_pred CCCCCeEEEEECCCEEEEEechHhh---------------ccccccC------ccceeeeEEEEeccCCCCCeEEc-c-C
Confidence 9999999999999999999854210 0000000 00002235678999999996633 2 2
Q ss_pred eEEEEEcc-cccEEEeeCCCCCCeeEEEecCCCC---ceEEEEecCccEEEEeccc
Q 002196 865 KISLFNMM-TFKTMTTFMPPPPAATFLAFHPQDN---NIIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 865 ~i~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~d~---~~lasgs~dg~i~iwd~~~ 916 (954)
.+.+|+.. ++.++.++.+|...|.+++|+| ++ .+||+|+.||.|+||++..
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 33344332 5778888999999999999999 74 5999999999999999863
No 51
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=343.34 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=211.7
Q ss_pred CcceEEEecCCCCeeEEEEcCCC-C-------eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCC
Q 002196 346 PKTVVMTLNQGSAVKSMDFHPVQ-Q-------ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY 417 (954)
Q Consensus 346 ~~~~~~~~~h~~~V~~~~~sp~g-~-------~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 417 (954)
...+..++.+.+.|++|+|+|++ . .+||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------------------ 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------------------ 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------------------
Confidence 35566677789999999999987 1 478888764310
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceee-eeeeecccCCEEEEEEecC------CCceEEEEEcCCCeEE
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYP------NKQLSVVTCGEDRVIK 490 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~------~~~~~l~s~~~dg~i~ 490 (954)
-..+|+++.|++++.|++|+||++.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.||+|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 01378999999999999999999998764321 1246678899999999997 34 799999999999
Q ss_pred EEECCCCce-----------EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEeeCCCCceEEE-
Q 002196 491 VWDAVTGTK-----------QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMM- 557 (954)
Q Consensus 491 iwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~- 557 (954)
+||+.++.. ...+.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 3478889999999999863 4799999999999999997643 44577888899999
Q ss_pred -EECCCC-CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeE
Q 002196 558 -AYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (954)
Q Consensus 558 -~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 634 (954)
+|+|+| .+|++++.|+ +|++||+++++....+.+|.. ..+.+++|+|+++.+++++.|++|++||++++.++.
T Consensus 316 ~~~s~~g~~~laS~S~D~----tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDG----YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEETTS----EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEeccCC----eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 8899998754 599999998877666666543 247889999999999999999999999999999888
Q ss_pred EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.+..| ...|++++|+|+|++|++|+.||+|++||+..
T Consensus 392 ~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 88765 66899999999999999999999999999743
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.6e-35 Score=350.38 Aligned_cols=293 Identities=20% Similarity=0.286 Sum_probs=248.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.|.+.|++++|+|++..+|++|+.||+|++||+.+....... ....+.+|...|.+++|+|++++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCCEE
Confidence 499999999999988669999999999999999875422100 111267899999999999999999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe---ccCCCCe
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGHESPV 510 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v 510 (954)
++|+.||+|+|||+.++.... .+.+|...|.+++|+|+++ .|++|+.|++|++||+......... .+|...|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999999999999999987665 6889999999999999999 6999999999999997655433332 4688999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|++++|++++.|+ .|++||+.+++.+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg----~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG----VVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS----BCEEEETTTTEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC----eEEEEECCCCceE
Confidence 999999876556899999999999999999888888888999999999999999999998755 4999999999988
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCC-----------------CCCcceEEECCC
Q 002196 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-----------------LQASPCIRFNKE 653 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s~~ 653 (954)
..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+++++|+|+
T Consensus 597 ~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 597 YSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp ECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 7776543 799999999988777765 56699999999988887753211 113678999999
Q ss_pred CCEEEEEeCCCcEEEEEcc
Q 002196 654 GILLAVSTNDNGIKILANA 672 (954)
Q Consensus 654 ~~~l~s~~~dg~i~iwd~~ 672 (954)
|++|++|+.||.|++|++.
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999975
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-34 Score=324.12 Aligned_cols=319 Identities=18% Similarity=0.300 Sum_probs=269.9
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|+ ++ ++++|+.||.|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887643 356679999999999999999999988666 788999999999998 44 699999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
+.+++.+..+.+|...|.++.+++ ..+++++.||.|++||+.+.+....+..+...+.++.| +++.+++++.++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 999999999999999999999852 57999999999999999998888888888889999999 788899988755
Q ss_pred CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
. |++||+++++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+ ...+.++.+ +
T Consensus 260 ~----i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~--~ 328 (445)
T 2ovr_B 260 M----VKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMEL--K 328 (445)
T ss_dssp C----EEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEE--E
T ss_pred E----EEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEE--e
Confidence 4 99999999999999998876 8988888 7889999999999999999999999888765 456777766 5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCC
Q 002196 654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 733 (954)
Q Consensus 654 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (954)
+.++++++.||.|++||+.++ +....+.++
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------------------------------------------- 358 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------------------------------------------- 358 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECST-------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEccC-------------------------------------------------
Confidence 679999999999999998766 222222100
Q ss_pred CCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCC
Q 002196 734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNST 813 (954)
Q Consensus 734 ~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~ 813 (954)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEee-----CCCCCCe
Q 002196 814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTF-----MPPPPAA 887 (954)
Q Consensus 814 g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~h~~~v 887 (954)
. .|...|++++|+ +++|++++ ||.|++||+.+++.+..+ .+|.+.|
T Consensus 359 ------------------------~--~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v 410 (445)
T 2ovr_B 359 ------------------------N--KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410 (445)
T ss_dssp ------------------------T--SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred ------------------------C--CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceE
Confidence 0 145567777774 57788887 888999998888888877 4678889
Q ss_pred eEEEecCCCCceEEEEecCcc----EEEEeccc
Q 002196 888 TFLAFHPQDNNIIAIGMEDSS----IQIYNVRV 916 (954)
Q Consensus 888 ~~l~~sp~d~~~lasgs~dg~----i~iwd~~~ 916 (954)
++++|+| ++.++|+|+.||+ |.|||+..
T Consensus 411 ~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 411 WRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999 9999999999998 99999874
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-34 Score=321.30 Aligned_cols=322 Identities=16% Similarity=0.266 Sum_probs=275.0
Q ss_pred ecCCCCe-eEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC
Q 002196 353 LNQGSAV-KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 353 ~~h~~~V-~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (954)
.+|.+.| .| ++++|+ ++++|+.||.|++||+.+++.+.. +.+|...|.+++|+ ++
T Consensus 115 ~~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~~ 170 (445)
T 2ovr_B 115 KGHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--DN 170 (445)
T ss_dssp ECSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--TT
T ss_pred cccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--CC
Confidence 3477765 55 445677 789999999999999999987754 67899999999998 67
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.||.|++||+.+++.+..+.+|...|.
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 243 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence 99999999999999999987665 678999999999996 44 599999999999999999999999999999999
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
++++ ++.++++++.||.|++||+++......+..+...+.++.| ++.++++++.++. |++||+++++.+.
T Consensus 244 ~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~----i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 244 CVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS----IRVWDVETGNCIH 313 (445)
T ss_dssp EEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC----EEEEETTTCCEEE
T ss_pred EEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe----EEEEECCCCCEEE
Confidence 9988 2368999999999999999998888888888889999999 8889999987554 9999999999999
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC-CCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
.+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+ .+...|.+++|+ +.+|++++.||.|++||
T Consensus 314 ~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 314 TLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9998876 7777766 4679999999999999999999999998763 246689999995 67999999999999999
Q ss_pred ccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccc
Q 002196 671 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEK 750 (954)
Q Consensus 671 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~ 750 (954)
+.++ +.+..+...
T Consensus 389 ~~~~-~~~~~~~~~------------------------------------------------------------------ 401 (445)
T 2ovr_B 389 LKTG-EFIRNLVTL------------------------------------------------------------------ 401 (445)
T ss_dssp TTTC-CEEEEEEEC------------------------------------------------------------------
T ss_pred CCCC-ceeeeeecc------------------------------------------------------------------
Confidence 9988 444333210
Q ss_pred ccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCe----EEEeeccC
Q 002196 751 SRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV----HKLWKWPR 807 (954)
Q Consensus 751 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~----v~lw~~~~ 807 (954)
....+...|.+++|+|++..+++++.||+ +.+||+..
T Consensus 402 --------------------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 --------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp --------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred --------------------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00125678999999999999999999997 99998763
No 55
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=312.51 Aligned_cols=247 Identities=15% Similarity=0.216 Sum_probs=201.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee-ec-ccCCEEEEEEecCCCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI-EA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~~~l~s~~~dg~i~i 491 (954)
+.+|.+.|.+++|+|+ +||+|+.|++|++||+.++... ....+ .+ |...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~i 84 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-LIDVLDETAHKKAIRSVAWRPHTS--LLAAGSFDSTVSI 84 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-EEEEECTTCCCSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-EEEEEecCCccCCEEEEEECCCCC--EEEEEeCCCcEEE
Confidence 6789999999999998 9999999999999999875321 11134 34 999999999999998 7999999999999
Q ss_pred EECCC-------CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC----ceeEeeCCCCceEEEEEC
Q 002196 492 WDAVT-------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYS 560 (954)
Q Consensus 492 wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s 560 (954)
||+.. .+.+..+.+|...|.+++|+|++ .+|++++.|++|++||++... ....+..|...|.+++|+
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g--~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG--YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTS--CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCC--CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 99853 45677889999999999999865 799999999999999995432 344567788899999999
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCCC--eEEEEEecCCCCCeEEEEEeCC--CCEEEEEECCCeEEEEECCCC------
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTT--KNRFLAAGDEFMIKFWDMDNV------ 630 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~------ 630 (954)
|++.+|++++.|+. |++||..++ +++..+.+|.. .|.+++|+|+ +..+++++.|++|++||+.++
T Consensus 163 p~~~~l~s~s~D~~----i~iW~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 163 PSEALLASSSYDDT----VRIWKDYDDDWECVAVLNGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp SSSSEEEEEETTSC----EEEEEEETTEEEEEEEECCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred CCCCEEEEEcCCCe----EEEEECCCCCeeEEEEccCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 99999999987654 999998776 67788888877 8999999998 678999999999999998754
Q ss_pred --ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 631 --NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 631 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 238 ~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 238 EWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 22333322 246689999999765 8899999999999998665
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.5e-35 Score=323.60 Aligned_cols=296 Identities=13% Similarity=0.169 Sum_probs=243.2
Q ss_pred ceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
.....+. |.+.|++++|+|++..+|++|+.||.|+|||+.+++..... ...+|...|.+++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKF 126 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEe
Confidence 4445554 99999999999999448999999999999999988765431 13479999999999
Q ss_pred cc-CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 427 SP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 427 sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
+| ++++|++++.|+.|++||+.+. ..........|...|.+++|+|+++ +|++++.|+.|++||+ +++.+..+.+
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~ 202 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKL 202 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred CCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEecc
Confidence 99 7899999999999999999863 3443323344558899999999999 7999999999999998 6888999999
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC----CceeEeeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEE
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL----GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~ 580 (954)
|...|.+++|++++. .++++++.|+.|++||+++. .....+ .+...+.+++|+| ++++|++++.++ .|+
T Consensus 203 h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~----~i~ 276 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCD-WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN----EIR 276 (383)
T ss_dssp SSSCEEEEEECSSCT-TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS----EEE
T ss_pred CCCcEEEEEECCCCC-CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC----cEE
Confidence 999999999998763 38999999999999999873 333333 5778999999999 999999998644 599
Q ss_pred EEeCCCCeEEEEEecCCC----------------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCC
Q 002196 581 EWNESEGAVKRTYHGLGK----------------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 581 iwd~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
+||+++++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~ 354 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGI 354 (383)
T ss_dssp EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSC
T ss_pred EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCce
Confidence 999998877666654421 13344566666665 667899999999999999999987655667
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
+.+++|+|++++|++++ ||.|++||+.+
T Consensus 355 ~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 355 ISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88889999999999997 89999999864
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-34 Score=325.06 Aligned_cols=319 Identities=18% Similarity=0.287 Sum_probs=268.7
Q ss_pred cCCCCCCe-EEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 414 SSDYTASV-NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 414 ~~~h~~~V-~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|++ .+++|+.||+|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 56788875 55555 67899999999999999999988666 788999999999999887 49999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce-----------------------eEeeC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-----------------------VDYDA 549 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----------------------~~~~~ 549 (954)
|+.+++.+..+.+|...|.+++|.+.+++.++++++.||.|++||+++.... .....
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9999999999999999999999998777789999999999999999876532 23444
Q ss_pred CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 550 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+...+.++ +++++++++++.++. |++||+.+++.+..+.+|.. .+.+++|+|+++++++|+.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~d~~----i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSYDNT----LIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEETTSC----EEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeCCCe----EEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 45556555 678999999987554 99999999999999998877 899999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCC
Q 002196 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSAN 709 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 709 (954)
++.+..+..| ...|.+++|+ +.+|++++.||.|++||+.++.....
T Consensus 342 ~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------ 387 (464)
T 3v7d_B 342 GELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS------------------------------ 387 (464)
T ss_dssp TEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE------------------------------
T ss_pred CcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee------------------------------
Confidence 9999998866 5689999997 57999999999999999875410000
Q ss_pred CCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCc
Q 002196 710 ANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL 789 (954)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 789 (954)
+
T Consensus 388 --------------------------------------------------------------------------~----- 388 (464)
T 3v7d_B 388 --------------------------------------------------------------------------Y----- 388 (464)
T ss_dssp --------------------------------------------------------------------------E-----
T ss_pred --------------------------------------------------------------------------e-----
Confidence 0
Q ss_pred eEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEE
Q 002196 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLF 869 (954)
Q Consensus 790 ~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iw 869 (954)
. +...+..++|+++++++++++||.|++|
T Consensus 389 -----~----------------------------------------------~~~~~~~~~~~~~~~~l~~~~dg~i~iw 417 (464)
T 3v7d_B 389 -----H----------------------------------------------HTNLSAITTFYVSDNILVSGSENQFNIY 417 (464)
T ss_dssp -----E----------------------------------------------CTTCCCEEEEEECSSEEEEEETTEEEEE
T ss_pred -----c----------------------------------------------CCCCccEEEEEeCCCEEEEecCCeEEEE
Confidence 0 2334556788999999999999999999
Q ss_pred EcccccEEEe-eCCCCCCeeEEEecCCCCceEEEEecCccEEEEe
Q 002196 870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (954)
Q Consensus 870 d~~~~~~~~~-~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd 913 (954)
|+.+++.+.. +.+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus 418 d~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 418 NLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred ECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 9999999886 66788899999997 466777778888666554
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=334.29 Aligned_cols=385 Identities=10% Similarity=0.120 Sum_probs=279.6
Q ss_pred eCCCCCcceeecCCCCCcceEEEe-c-CCCCeeEEEEcC-CCCeEEEEEEcCCeEEEEeCCC---CceeeeeeeEEEecc
Q 002196 330 YTPQSLGQSSYSTDDLPKTVVMTL-N-QGSAVKSMDFHP-VQQILLVVGTNMGDVMLWEVGS---RERIAVKSFKVWELG 403 (954)
Q Consensus 330 ~s~~g~~~~~~~~~~~~~~~~~~~-~-h~~~V~~~~~sp-~g~~ll~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 403 (954)
|+|++..+++.......+.++..+ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~---------- 103 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS---------- 103 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS----------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc----------
Confidence 788888877665444556777887 4 789999999999 888 889999999999999876 33110
Q ss_pred CCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEee---CCcceeeeeeeecccCCEEEEEEecCCCceEE
Q 002196 404 ACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH---GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480 (954)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l 480 (954)
.....+|...|.+++|+|++++|++|+.||.|++||++ +++... .+.+| .+..+.|+|++
T Consensus 104 -------~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~----- 166 (437)
T 3gre_A 104 -------SSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG----- 166 (437)
T ss_dssp -------CSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS-----
T ss_pred -------eeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc-----
Confidence 00112599999999999999999999999999999995 444333 33334 56666666532
Q ss_pred EEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC--CCCceEEEE
Q 002196 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMA 558 (954)
Q Consensus 481 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~ 558 (954)
+...+.++.+...+++.++++++.|+.|++||+++......+.. +...|.+++
T Consensus 167 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 167 -------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp -------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred -------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 23344555544455668999999999999999999888888877 677999999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe-cCCCCCeEEEEEe----CCCCEEEEEECCCeEEEEECCCCcee
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFD----TTKNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
|+|++++|++++.++. |++||+++++.+..+. .+.. .|.+++|+ |++.++++++.||.|++||+.+++.+
T Consensus 222 ~s~~~~~l~s~~~dg~----i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 222 IDEECCVLILGTTRGI----IDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp ECTTSCEEEEEETTSC----EEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcCCCe----EEEEEcCCccEEEEEecCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 9999999999987654 9999999999999887 4544 89999665 46779999999999999999999999
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcc
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (954)
..+..+ ...+..+.|+|+++.+ .+.. +
T Consensus 297 ~~~~~~--~~~~~~~~~~~~~~~l----~~~~---------------~-------------------------------- 323 (437)
T 3gre_A 297 YAFINS--DEQPSMEHFLPIEKGL----EELN---------------F-------------------------------- 323 (437)
T ss_dssp EEEESS--SSCCCGGGGSCBCSSG----GGCC---------------C--------------------------------
T ss_pred EEEEcC--CCCCccceeccccccc----ccce---------------e--------------------------------
Confidence 999866 4467777888875443 0000 0
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEE
Q 002196 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (954)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 793 (954)
....|...|.+++|+ ++.+|++
T Consensus 324 ---------------------------------------------------------~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 324 ---------------------------------------------------------CGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp ---------------------------------------------------------CCCCSGGGGCCEEEE-TTEEEEE
T ss_pred ---------------------------------------------------------cccccCCceEEEEEC-CceEEEe
Confidence 001167788999999 8889999
Q ss_pred eecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEccc
Q 002196 794 LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMT 873 (954)
Q Consensus 794 ~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~ 873 (954)
++.||.|++||+..+ +..............+....++++..+++.. |+...
T Consensus 346 ~~~d~~i~~wd~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 396 (437)
T 3gre_A 346 DEATSSIVMFSLNEL----------------------SSSKAVISPSRFSDVFIPTQVTANLTMLLRK-------MKRTS 396 (437)
T ss_dssp EGGGTEEEEEETTCG----------------------GGCEEEECC--CCCEEEEEEEETTEEEEEEE-------CC---
T ss_pred cCCCCeEEEEECCCc----------------------ccceEEecccccCceEEEEEeecceEEEEEe-------ccccc
Confidence 999999999987642 2111111100123344455566665555444 33334
Q ss_pred ccEEEeeCCCCCCeeEEEecCCC--CceEEEEecCccEEEEe
Q 002196 874 FKTMTTFMPPPPAATFLAFHPQD--NNIIAIGMEDSSIQIYN 913 (954)
Q Consensus 874 ~~~~~~~~~h~~~v~~l~~sp~d--~~~lasgs~dg~i~iwd 913 (954)
.........|.+.|++++|++ + +.+|++|+.||.|+||+
T Consensus 397 ~~~~~~~~~h~~~I~~i~~~~-~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THSVDDSLYHHDIINSISTCE-VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEE-SSSSEEEEEEETTSCEEEEC
T ss_pred ccccCcccccccceeeEeeec-cCCceEEEEEcCCceEEEeC
Confidence 445556677999999999999 5 78999999999999995
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-34 Score=308.95 Aligned_cols=299 Identities=16% Similarity=0.270 Sum_probs=248.4
Q ss_pred cCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcce--eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
+.+|.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 7899999999999997 689999999999999999876532 22346789999999999999999 799999999999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee-EeeCCCCceEEEEECCCC--CEEE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADG--ARLF 567 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g--~~l~ 567 (954)
+|+............+...+..+.+.+.+ .++++++.|+.+++||+....... ....+...+..++|++++ ..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN--RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecC--ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 99999999988888888889888887665 789999999999999987654433 344566789999999875 4566
Q ss_pred EEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcce
Q 002196 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (954)
+++.++ .|++||+++++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+ ..|.+
T Consensus 190 s~~~d~----~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~ 261 (340)
T 4aow_A 190 SCGWDK----LVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DIINA 261 (340)
T ss_dssp EEETTS----CEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCEEE
T ss_pred EEcCCC----EEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceEEe
Confidence 666544 499999999999999999877 8999999999999999999999999999999999888754 46899
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccccccc
Q 002196 648 IRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMV 727 (954)
Q Consensus 648 v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (954)
+.|+|++.+++ ++.|+.|++||+.++ .....+..+...
T Consensus 262 ~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~---------------------------------------- 299 (340)
T 4aow_A 262 LCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS---------------------------------------- 299 (340)
T ss_dssp EEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC-------------------------------------------
T ss_pred eecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee----------------------------------------
Confidence 99999887665 556899999999877 444444321100
Q ss_pred ccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccC
Q 002196 728 GMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR 807 (954)
Q Consensus 728 ~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~ 807 (954)
....+|...|++++|+|||++|++++.||.|++|++.+
T Consensus 300 ------------------------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 300 ------------------------------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ----------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ------------------------------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 01123778899999999999999999999999999875
Q ss_pred C
Q 002196 808 N 808 (954)
Q Consensus 808 ~ 808 (954)
+
T Consensus 338 G 338 (340)
T 4aow_A 338 G 338 (340)
T ss_dssp -
T ss_pred c
Confidence 4
No 60
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-34 Score=313.20 Aligned_cols=291 Identities=12% Similarity=0.127 Sum_probs=256.1
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
..+...+|.+.|++++|+|+++ +|++|+.||.|++||+.+++.+.. +.+|...|.+++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence 3344456999999999999999 789999999999999999887654 67899999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----CeEEEEECCCCc----
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGT---- 498 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~i~iwd~~~~~---- 498 (954)
|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence 999999999999999999999988665 444 888999999999999 68899888 999999987653
Q ss_pred -------eEEEeccCCC--CeEEEeeeccCCccEEEEEecCCeEEEEeCCC-CCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 499 -------KQYIFEGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 499 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
....+..|.. .+.+++|++++ .++++++.||.|++||+++ ......+..+...+.+++|+|++++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 158 LTKVSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence 3445556666 89999998866 7999999999999999998 5666677788889999999999999999
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC--------------eEEEEECCCCceeE
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--------------MIKFWDMDNVNLLA 634 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~ 634 (954)
++.++ .|++||+++++.+..+.. .. .+..++|+|++.++++++.++ .+++||..+++.+.
T Consensus 236 ~~~d~----~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 236 SSRDT----NSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EETTS----EEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred ecCCc----eEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 98644 599999999999888883 33 799999999999999999888 89999999999999
Q ss_pred EEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 310 ~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 310 RVQGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred heecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 99866 568999999999999999999999999999765
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-34 Score=322.09 Aligned_cols=293 Identities=13% Similarity=0.137 Sum_probs=251.8
Q ss_pred EEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCc------eeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE------RIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 350 ~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
...+. |.+.|++++|+| + +|++|+.||.|++||+.+++ .... +.+|...|.
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~v~ 66 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSGLH 66 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTCEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCcEE
Confidence 34444 999999999999 4 88999999999999999887 2222 567999999
Q ss_pred EEEEccC----C---CEEEEEEcCCEEEEEEeeCCcc-----eeeeeeeecc-----cCCEEEEEEe----cCCCceE-E
Q 002196 423 RVMWSPD----G---TLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAH-----VGSVNDLAFS----YPNKQLS-V 480 (954)
Q Consensus 423 ~l~~spd----g---~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~h-----~~~v~~~~~s----~~~~~~~-l 480 (954)
+++|+|+ + ++|++++.||.|++|++.+++. .. .+..| ...|.+++|+ |+++ + |
T Consensus 67 ~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l 141 (397)
T 1sq9_A 67 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRL 141 (397)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEE
T ss_pred EEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEE
Confidence 9999999 9 9999999999999999998875 44 56777 5899999999 9998 7 9
Q ss_pred EEEcCCCeEEEEECCC------CceEE-----Ee-------ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC
Q 002196 481 VTCGEDRVIKVWDAVT------GTKQY-----IF-------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG 542 (954)
Q Consensus 481 ~s~~~dg~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 542 (954)
++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++ ++++++.||.|++||+++..
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTE
T ss_pred EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCc
Confidence 9999999999999998 66665 67 4489999999998743 89999999999999999888
Q ss_pred ceeEeeC---C---CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec-------------CCCCCeEE
Q 002196 543 SRVDYDA---P---GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-------------LGKRSVGV 603 (954)
Q Consensus 543 ~~~~~~~---~---~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~i~~ 603 (954)
....+.. + ...+.+++|+|++++|++++.++ ..+.|++||+++++.+..+.. |.. .|.+
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 296 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMS 296 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccCC-cEEE
Confidence 8888887 7 88999999999999999998641 015699999999999999988 666 8999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe------cC-------------CCCCCcceEEECCCC----------
Q 002196 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID------AD-------------GGLQASPCIRFNKEG---------- 654 (954)
Q Consensus 604 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~---------- 654 (954)
++|+|++++|++++.||.|++||+.+++.+..+. .+ .|...|.+++|+|++
T Consensus 297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 9999999999999999999999999999999988 43 015689999999998
Q ss_pred CEEEEEeCCCcEEEEEccCC
Q 002196 655 ILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 655 ~~l~s~~~dg~i~iwd~~~~ 674 (954)
++|++++.||.|++|++.++
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC-
T ss_pred ceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999876
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-33 Score=317.75 Aligned_cols=279 Identities=15% Similarity=0.255 Sum_probs=243.4
Q ss_pred ecCCCC-eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC
Q 002196 353 LNQGSA-VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 353 ~~h~~~-V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (954)
.+|.+. +.++.|+ ++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 118 ~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHGG- 174 (464)
T ss_dssp ECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECSTT-
T ss_pred cCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcCCC-
Confidence 347776 4666664 45 889999999999999999987654 67899999999999988
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec--CCCceEEEEEcCCCeEEEEECCCCce----------
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTK---------- 499 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~~dg~i~iwd~~~~~~---------- 499 (954)
+|++|+.||+|++||+++++.+. .+.+|...|.+++|++ +++ ++++|+.|+.|++||+.++..
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 99999999999999999987665 7889999999999995 555 799999999999999987752
Q ss_pred -------------EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEE
Q 002196 500 -------------QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 500 -------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
+..+.+|...|.++. +++ .++++++.||.|++||+++.+....+..+...+.+++|+|+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTVS--GHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEEE--EET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEEc--CCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 557788999998874 333 799999999999999999988888888888999999999999999
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcc
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (954)
++++.++. |++||+++++.+..+.+|.. .+.+++|+ +.++++++.||.|++||+.++........ ...+.
T Consensus 326 ~sg~~dg~----i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~ 395 (464)
T 3v7d_B 326 ISASMDTT----IRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH---TNLSA 395 (464)
T ss_dssp EEEETTSC----EEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC---TTCCC
T ss_pred EEEeCCCc----EEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC---CCCcc
Confidence 99987554 99999999999999999877 89999987 58999999999999999999887666642 34678
Q ss_pred eEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 647 ~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++|+++++++++++ ||.|++||+.++
T Consensus 396 ~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 899999999999998 899999999988
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=303.41 Aligned_cols=288 Identities=18% Similarity=0.262 Sum_probs=248.9
Q ss_pred cceEEEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEE
Q 002196 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (954)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (954)
.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 35666666 9999999999 9998 789999999999999988776543 456899999999
Q ss_pred EccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 426 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
|+|++++|++++.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++....+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876544444478899999999999 455 699999999999999 7788889999
Q ss_pred CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
|...+.++++.+.. +.++++++.||.|++||. ......+.. +...+.+++|+|++. +++++.+ +.|++||+
T Consensus 141 ~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d----g~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSFS-ENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND----GLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEETT-TTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETT----SEEEEEET
T ss_pred CCCceeEEEEccCC-CCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCC----CeEEEEEC
Confidence 99999999998732 379999999999999993 344455555 677999999999998 7777654 45999999
Q ss_pred CCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
++++.+..+..|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+ ...|.+++|+|+++ +++++.||
T Consensus 213 ~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 213 HTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTS
T ss_pred CchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCC
Confidence 99999999998877 89999999999 6899999999999999999999999876 55899999999998 55789999
Q ss_pred cEEEEEccCC
Q 002196 665 GIKILANADG 674 (954)
Q Consensus 665 ~i~iwd~~~~ 674 (954)
.|++|++.++
T Consensus 288 ~i~iw~~~~~ 297 (313)
T 3odt_A 288 LVRIFSQEKS 297 (313)
T ss_dssp CEEEEESCGG
T ss_pred cEEEEeCCCC
Confidence 9999999876
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7e-35 Score=320.64 Aligned_cols=291 Identities=16% Similarity=0.236 Sum_probs=244.8
Q ss_pred cCCCCeeEEEEcCC---CCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-
Q 002196 354 NQGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD- 429 (954)
Q Consensus 354 ~h~~~V~~~~~sp~---g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 429 (954)
+|.++|++++|+|+ +..++++++.++.|++||+.+++.+.... ......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 49999999999985 55567777778899999999887654311 0012347889999999999
Q ss_pred ---CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEec-CCCceEEEEEcCCCeEEEEECCCCceEEEe--
Q 002196 430 ---GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-- 503 (954)
Q Consensus 430 ---g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-- 503 (954)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.||.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987665 6788999999999999 777 7999999999999999999999988
Q ss_pred -ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee----------------------------CCCCce
Q 002196 504 -EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----------------------------APGHSS 554 (954)
Q Consensus 504 -~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~v 554 (954)
.+|...|.+++|++++ .++++++.||.|++||+++......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 7899999999998865 799999999999999998754432222 267789
Q ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe--------------EEEEEecCCCCCeEEEEEeCC--CCEEEEEEC
Q 002196 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--------------VKRTYHGLGKRSVGVVQFDTT--KNRFLAAGD 618 (954)
Q Consensus 555 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--------------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 618 (954)
.+++|+ ++++++++.+ +.|++||+.++. .+..+..|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCE----NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECSS----SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEecC----CEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 7788888764 459999998764 3777888776 8999999999 999999999
Q ss_pred CCeEEEEECCCCce----eEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 619 EFMIKFWDMDNVNL----LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 619 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998763 3466666556789999999999999999999999999975
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.3e-35 Score=327.39 Aligned_cols=293 Identities=17% Similarity=0.232 Sum_probs=235.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (954)
.|...|+|++|||.+..+||+|+.||.|+|||+.+++..... .+.+|.+.|++|+|+| ++++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCCE
Confidence 488899999999976669999999999999999887644321 1568999999999998 7899
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
|++|+.||+|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|...|.+
T Consensus 180 l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred EEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 99999999999999987543 22222233455688999999999 79999999999999975 5667788999999999
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeE---eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 589 (954)
++|+|.++ .++++++.|+.|++||+++...... ...|...|.+++|+|+|++|++++.|+. |++||+.++..
T Consensus 256 v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~----i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE----IRVYSASQWDC 330 (435)
T ss_dssp EEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC----EEEEESSSSSS
T ss_pred eeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE----EEEEECCCCcc
Confidence 99998764 5899999999999999987664432 3456779999999999999999987654 99999999988
Q ss_pred EEEEecCCCC-----CeEEEEEeCCCCEEEEEE------------CCCeEEEEECCCCceeEEEecCCCCCCcceE-EEC
Q 002196 590 KRTYHGLGKR-----SVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCI-RFN 651 (954)
Q Consensus 590 ~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 651 (954)
...+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEEC
Confidence 7777665321 223456777777777664 2357999999999998887542 34567777 699
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
|+|.+|++|+ |+.|+||++.++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999887
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=315.25 Aligned_cols=289 Identities=13% Similarity=0.201 Sum_probs=239.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEc---CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC--
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-- 429 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 429 (954)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++..... ..+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEcCCCC
Confidence 99999999999999888888887 999999999998765421 2358999999999998
Q ss_pred -CCEEEEEEcCCEEEEEEeeCCc-ceeeeeeeecccCCEEEEEE------ecCCCceEEEEEcCCCeEEEEECCCCc-eE
Q 002196 430 -GTLFGVAYSKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVIKVWDAVTGT-KQ 500 (954)
Q Consensus 430 -g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~------s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~ 500 (954)
+++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999886 444 67899999999965 67888 79999999999999999987 77
Q ss_pred EEeccCCC----CeEEEeeec--cCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECC---CCCEEEEEEe
Q 002196 501 YIFEGHES----PVYSICPHH--KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA---DGARLFSCGT 571 (954)
Q Consensus 501 ~~~~~~~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~ 571 (954)
..+..|.+ .+.+++|.+ .+++.++++++.||.|++||+++..... ...+...+.+++|+| ++.++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 88876655 788888422 2344899999999999999999876543 355677999999999 9999999886
Q ss_pred CCCCceEEEEEeCCCCeEEEEEe-----cCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCC---------------
Q 002196 572 NKEGESYLVEWNESEGAVKRTYH-----GLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV--------------- 630 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------- 630 (954)
++ .|++||+++++....+. +|.. .|.+++|+|++. ++++++.||.|++||+.++
T Consensus 233 dg----~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 233 EG----KFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp TT----EEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred CC----eEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 44 59999998776544443 6666 899999999998 8999999999999998754
Q ss_pred ----ceeEEEecCCCCCCcceEEECCCCCEEE-EEeCCCcEEEEEccCC
Q 002196 631 ----NLLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADG 674 (954)
Q Consensus 631 ----~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~~dg~i~iwd~~~~ 674 (954)
+.+..+..| ...|.+++|+|++++|+ +++.||.|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 345555544 66899999999999988 8999999999999865
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-34 Score=317.91 Aligned_cols=291 Identities=14% Similarity=0.093 Sum_probs=245.2
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCc--eeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
|.++|++++|+|+++ +|++|+.||.|++||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 888999999999998 78999999999999999886 3332 5679999999999999999
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce----EEEeccCCC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK----QYIFEGHES 508 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~ 508 (954)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ ++++++.|+.|++||+..+.. .....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999876433 224567999999999999998 799999999999999988763 333467899
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCC------------------CCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYD------------------NLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
.|.+++|++++ .++++++.||.|++||++ .......+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999999865 799999999999999964 4455566667778999999999999999998
Q ss_pred eCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC--Ccee---------------
Q 002196 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLL--------------- 633 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 633 (954)
.++ .|++||+++++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~d~----~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 HDS----TVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp TTT----EEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred CCC----EEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 644 599999999999999998876 89999999999877777 899999999987 4210
Q ss_pred -----------------------EEEecCCCCCCcceEEEC-CCC---CEEEEEeCCCcEEEEEccCCCee
Q 002196 634 -----------------------ASIDADGGLQASPCIRFN-KEG---ILLAVSTNDNGIKILANADGIRL 677 (954)
Q Consensus 634 -----------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~~ 677 (954)
..+. .+|...|++++|+ ++| .+|++++.||.|++|++.++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 1111 2456789999976 677 99999999999999999876433
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-33 Score=305.90 Aligned_cols=302 Identities=11% Similarity=0.160 Sum_probs=248.8
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
.+.+|...|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987666 7889999999999999998 79999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecC-----CeEEEEeCCCCCc-----------eeEeeCCCC--ce
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGS-----------RVDYDAPGH--SS 554 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~v 554 (954)
|+.+++.+..+. +...|.+++|++++ .++++++.+ +.|++||+..... ......+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999888 88999999998866 799999998 9999999886543 223333444 89
Q ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee
Q 002196 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 555 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
.+++|+|+++++++++.++ .|++||+++ +..+..+..|.. .+.+++|+|++.+|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDG----KISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEETTS----EEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcCCC----EEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 9999999999999987644 599999999 788888888876 8999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcc
Q 002196 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (954)
..+.. ...+.+++|+|+++++++++.++.+.+|......
T Consensus 254 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEEC---SSCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 88873 4578999999999999999999866665443220
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEE
Q 002196 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (954)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 793 (954)
....+++|+.... .....+ .+|...|.+++|+|++++|++
T Consensus 293 ---------------------------------~~~~i~~~d~~~~---~~~~~~----~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 293 ---------------------------------GKFEARFYHKIFE---EEIGRV----QGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp -----------------------------------CEEEEEETTTC---CEEEEE----ECCSSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------CcceeEEEecCCC---cchhhe----ecccCcEEEEEECCCCCEEEE
Confidence 0124556665431 111111 237789999999999999999
Q ss_pred eecCCeEEEeeccCC
Q 002196 794 LASNAVHKLWKWPRN 808 (954)
Q Consensus 794 ~~~dg~v~lw~~~~~ 808 (954)
++.||.|++|++...
T Consensus 333 ~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 333 GGEDGFIRLHHFEKS 347 (369)
T ss_dssp EETTSEEEEEEECHH
T ss_pred EcCCCeEEEEECccc
Confidence 999999999998753
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.2e-34 Score=314.17 Aligned_cols=301 Identities=12% Similarity=0.135 Sum_probs=243.7
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec--cCCCCeEEEeeeccCCccEEEEEecCCeEEE
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~i 535 (954)
.+.+|...|++++|+|++.. +|++|+.||.|++||+.+++....+. +|...|.+++|++.. +.++++++.|+.|++
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSSIRGATTL 145 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEETTTEEEE
T ss_pred eccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEeCCCEEEE
Confidence 67889999999999999933 79999999999999999988887775 699999999998832 379999999999999
Q ss_pred EeCCCCCceeEeeCCC---CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-
Q 002196 536 WLYDNLGSRVDYDAPG---HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN- 611 (954)
Q Consensus 536 wd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 611 (954)
||++. .....+..+. ..+.+++|+|+++++++++.++ .|++||+ +++.+..+..|.. .|.+++|+|+++
T Consensus 146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~-~~~~~~~~~~h~~-~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG----RLLLLGL-DGHEIFKEKLHKA-KVTHAEFNPRCDW 218 (383)
T ss_dssp EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS----EEEEEET-TSCEEEEEECSSS-CEEEEEECSSCTT
T ss_pred EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC----CEEEEEC-CCCEEEEeccCCC-cEEEEEECCCCCC
Confidence 99986 4444443333 5799999999999999998644 5999999 5778888888877 999999999998
Q ss_pred EEEEEECCCeEEEEECCC----CceeEEEecCCCCCCcceEEECC-CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccc
Q 002196 612 RFLAAGDEFMIKFWDMDN----VNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTF 686 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 686 (954)
++++++.|+.|++||+.+ +..+..+. +...|.+++|+| ++.+|++++.|+.|++||+.++ .....+.+|..
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~ 294 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPH 294 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCB
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccc
Confidence 999999999999999987 56666663 356899999999 9999999999999999999877 33333332211
Q ss_pred cceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCcee
Q 002196 687 DASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCR 766 (954)
Q Consensus 687 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~ 766 (954)
..
T Consensus 295 ~~------------------------------------------------------------------------------ 296 (383)
T 3ei3_B 295 RQ------------------------------------------------------------------------------ 296 (383)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred EEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCc
Q 002196 767 SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAV 846 (954)
Q Consensus 767 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v 846 (954)
..|...+. +.|+|++ .+
T Consensus 297 ------~~~~~~~~-~~~~p~~--------------------------------------------------------~~ 313 (383)
T 3ei3_B 297 ------FQHLTPIK-ATWHPMY--------------------------------------------------------DL 313 (383)
T ss_dssp ------CTTSCCCC-CEECSSS--------------------------------------------------------SE
T ss_pred ------cccccceE-EeccCCC--------------------------------------------------------Cc
Confidence 00222222 2454443 34
Q ss_pred cEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCC--CCCCeeEEEecCCCCceEEEEecCccEEEEeccc
Q 002196 847 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 847 ~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~ 916 (954)
..++|+|||++ +++ |+.|++||+.+++.+..+.+ |...+.+++|+| ++++||+|+ ||.|+|||+++
T Consensus 314 ~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 314 IVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 45688999998 666 99999999999999999987 456788889999 999999997 99999999875
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.7e-34 Score=310.88 Aligned_cols=302 Identities=12% Similarity=0.106 Sum_probs=232.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCC-------eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMG-------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
.-+-+|+|++|+|||+ +|++|+.+. .|++|++..+.......+.. .....+.+|...|.++++
T Consensus 12 ~~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~---------~~~~~l~~~~~~v~s~~~ 81 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHI---------LSEFALEDNDDSPTAIDA 81 (365)
T ss_dssp ECSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEE---------EEEEECCTTSCCCCEEEE
T ss_pred CCCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeee---------eeEEEccCCCCceEEEEe
Confidence 3456899999999998 788887543 59999988765332111100 011125678888988876
Q ss_pred ccCCCEEEEEE-----------cCCEEEEEEeeCCcceeee-e-----eeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 427 SPDGTLFGVAY-----------SKHIVHLYTYHGGDELRNH-L-----EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 427 spdg~~l~s~~-----------~dg~i~iwd~~~~~~~~~~-~-----~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
+ ++.+++|. .|+.+++|++.+....... . ....+...+.+++|+|||+.+.+++++.|++|
T Consensus 82 ~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 82 S--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp E--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred C--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 4 55666653 4778999999875432211 1 12234556899999999996445566789999
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe--eCCCCceEEEEECCCCCEEE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~ 567 (954)
++||+.+++++..+. |...|.+++|+|++ +++++++.+ .+++|+..+....... ..+...+.+++|+|+++.++
T Consensus 160 ~iwd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEEETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EEeECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 999999999999886 77889999998766 788888855 5566666666654433 34556899999999999999
Q ss_pred EEEeCCCCceEEEEEeCCCCeE----EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE-ecCCCC
Q 002196 568 SCGTNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-DADGGL 642 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 642 (954)
+++.++.....++.||...+.. ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+| .
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~ 312 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--S 312 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--S
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--c
Confidence 9998877677899999877643 345667766 8999999999999999999999999999999998876 444 6
Q ss_pred CCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 643 QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 643 ~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
..|++++|+|||++||+++.|++|+||++..+
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 78999999999999999999999999999765
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.5e-33 Score=312.10 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=220.7
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc------ceeeeeeeecccCCEEEEEEecC----C---CceE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD------ELRNHLEIEAHVGSVNDLAFSYP----N---KQLS 479 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~~~~s~~----~---~~~~ 479 (954)
.+.+|.+.|++++|+| ++|++|+.||.|++|++.+++ ... .+.+|...|.+++|+|+ + + +
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~g~~~~--~ 83 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY---SHFVHKSGLHHVDVLQAIERDAFELC--L 83 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEE---EEECCTTCEEEEEEEEEEETTTEEEE--E
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcce---EEecCCCcEEEEEEecccccCCcccc--E
Confidence 3678999999999999 899999999999999999876 333 67799999999999999 8 7 7
Q ss_pred EEEEcCCCeEEEEECCCCce-----EEEeccC-----CCCeEEEeee----ccCCccE-EEEEecCCeEEEEeCCC----
Q 002196 480 VVTCGEDRVIKVWDAVTGTK-----QYIFEGH-----ESPVYSICPH----HKENIQF-IFSTATDGKIKAWLYDN---- 540 (954)
Q Consensus 480 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~~-l~s~s~dg~i~iwd~~~---- 540 (954)
|++++.|+.|++||+.+++. ...+..| ...|.+++|+ +++ .+ +++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL--SHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC--ceEEEEEeCCCcEEEEeCCccccc
Confidence 99999999999999999887 8889888 5999999999 654 78 99999999999999988
Q ss_pred --CCcee-----Ee-------eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec---C---CCCC
Q 002196 541 --LGSRV-----DY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L---GKRS 600 (954)
Q Consensus 541 --~~~~~-----~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~~ 600 (954)
..... .+ ..+...+.+++|+|++ .+++++.+ +.|++||+++++.+..+.. | .. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~h~~~~~-~ 235 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN----GTVQISELSTLRPLYNFESQHSMINNSN-S 235 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT----SEEEEEETTTTEEEEEEECCC---CCCC-C
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC----CcEEEEECCCCceeEEEeccccccccCC-c
Confidence 55544 44 3467789999999999 88888754 4599999999999999988 6 55 8
Q ss_pred eEEEEEeCCCCEEEEEECC---CeEEEEECCCCceeEEEecCC-----------CCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 601 VGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADG-----------GLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 601 i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
+.+++|+|++.+|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 9999999999999999999 999999999999999887611 36689999999999999999999999
Q ss_pred EEEEccCCCeeEEEec
Q 002196 667 KILANADGIRLLRTVE 682 (954)
Q Consensus 667 ~iwd~~~~~~~~~~~~ 682 (954)
++||+.++ +.+..+.
T Consensus 316 ~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 316 RFWDVKTK-ERITTLN 330 (397)
T ss_dssp EEEETTTT-EEEEEEE
T ss_pred EEEEcCCC-ceeEEEe
Confidence 99999988 6666665
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-33 Score=333.72 Aligned_cols=256 Identities=19% Similarity=0.260 Sum_probs=218.9
Q ss_pred cCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcce--eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
+.+|.+.|++++|+|+ +++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGELR 455 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcEE
Confidence 6789999999999996 479999999999999999864321 12236789999999999999999 799999999999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe---eCCCCceEEEEECCCC--CE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSADG--AR 565 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g--~~ 565 (954)
+||+.++..+..+.+|...|.+++|++++ .+|++++.|++|++||.......... ..|...|.+++|+|++ ..
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCC--CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 99999999999999999999999998866 78999999999999998653322221 2455689999999987 57
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
+++++.|+. |++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.. ...|
T Consensus 534 l~s~s~d~~----v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v 605 (694)
T 3dm0_A 534 IVSASWDKT----VKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVI 605 (694)
T ss_dssp EEEEETTSC----EEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCE
T ss_pred EEEEeCCCe----EEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcE
Confidence 888886554 99999999999999999877 899999999999999999999999999999998877754 3469
Q ss_pred ceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
.+++|+|++.++++++ ++.|++||+.++ ..+..+..
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~ 641 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKV 641 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECC
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcc
Confidence 9999999999888776 556999999988 66655543
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-33 Score=308.36 Aligned_cols=291 Identities=16% Similarity=0.264 Sum_probs=243.6
Q ss_pred cCCCC--eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC
Q 002196 354 NQGSA--VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 354 ~h~~~--V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (954)
+|... +.+++|++ .. +++++.||.|++||+.+++..... ...|...|.+++|+|+++
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCC
Confidence 35444 55677775 32 467779999999999998876531 234889999999999999
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC-CCceEEEeccCCCCe
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFEGHESPV 510 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v 510 (954)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ ++++++.||.|++||++ .+..+..+.+|...|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999987666 677999999999995 45 69999999999999998 567788899999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
.+++|++++ .++++++.|+.|++||+++......+..+...+.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRSDG--LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcCCC--CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 999999855 79999999999999999998888888888889999999998866655442 122556999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEE
Q 002196 591 RTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 668 (954)
..+..+ . .+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|++
T Consensus 298 ~~~~~~-~-~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDAG-S-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEECS-S-CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeCC-C-cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 888743 3 799999999999999954 899999999999777666554455778999999999999999999999999
Q ss_pred EEccCCCee
Q 002196 669 LANADGIRL 677 (954)
Q Consensus 669 wd~~~~~~~ 677 (954)
|++.++...
T Consensus 376 w~~~~~~~~ 384 (401)
T 4aez_A 376 WRVYDGDHV 384 (401)
T ss_dssp EECCC----
T ss_pred EECCCCccc
Confidence 999988433
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.9e-33 Score=306.68 Aligned_cols=247 Identities=15% Similarity=0.168 Sum_probs=215.3
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+..|..+|++++|+|++++|++|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 34589999999999999999999999999999999876 112236789999999999999998 799999999999999
Q ss_pred CCCCceEEE--eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc----eeEeeCCCCceEEEEECCCCCEEE
Q 002196 494 AVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARLF 567 (954)
Q Consensus 494 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~ 567 (954)
+.+++.... +..|...|.+++|++++ .++++++.|+.|++||++.... ......+...+.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 988875544 46799999999998765 7999999999999999998764 222344577999999999999999
Q ss_pred EEEeCCCCceEEEEEeC------------------CCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 568 SCGTNKEGESYLVEWNE------------------SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+++.++. +++||+ ..++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 ~~~~dg~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSCDFK----CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEETTSC----EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcCCCC----EEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9987554 999995 46788888887766 899999999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
++.+..+..+ ...|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999866 5589999999999988877 899999999987
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.7e-32 Score=305.51 Aligned_cols=282 Identities=14% Similarity=0.249 Sum_probs=241.8
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
..+.|+||+++ +||+|. |++|+|||..+++...... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999864 778775 8999999999998765311 457889999999999999999999
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeEEEeee
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPH 516 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~ 516 (954)
.||.|+|||+++++.+. .+.+|...+.+++|+ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998776 788999999998886 55 6999999999999998864 4567889999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCCc----eeEeeCCCCceEEEEECCCCCEEE-EEEeCCCCceEEEEEeCCCCeEEE
Q 002196 517 HKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSADGARLF-SCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
+.+ .++++++.|+.+++|+..+... ......+...|.+++|+|++..++ +++. ..++.|++||+.++....
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 766 7999999999999999987653 344566777999999999776554 4442 336679999999999999
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
.+..+. .+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+| ...|.+++|+|+|++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 688999999999998876 7899999999999999999866 6689999999999999999999999999
Q ss_pred EccCC
Q 002196 670 ANADG 674 (954)
Q Consensus 670 d~~~~ 674 (954)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
No 76
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.5e-32 Score=339.89 Aligned_cols=478 Identities=11% Similarity=0.048 Sum_probs=334.9
Q ss_pred cceEEEecCCCCeeEEEEcCCCCeEEEEEEc-----CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCe
Q 002196 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTN-----MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421 (954)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 421 (954)
+.......|...|.+++|||||++++.++.. +..|++||+.+++... +..|...+
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~--------------------lt~~~~~~ 102 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR--------------------ITYFSGKS 102 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE--------------------CCCCCEEE
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEE--------------------cccCCCcc
Confidence 3444555689999999999999955444332 2479999998876432 56687777
Q ss_pred -------EEEEEccCCCEEEEEEcC------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC---
Q 002196 422 -------NRVMWSPDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--- 485 (954)
Q Consensus 422 -------~~l~~spdg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~--- 485 (954)
.+++|||||+.+++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 103 ~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~~ 172 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTFE 172 (1045)
T ss_dssp ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCSC
T ss_pred cccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCCC
Confidence 999999999977777644 357888887765332 3333 235677999 6 3666642
Q ss_pred ---------CCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC-ceeEeeCCCCceE
Q 002196 486 ---------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSST 555 (954)
Q Consensus 486 ---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~ 555 (954)
+....+|....+.....+.+|...+.++.|+++ .++++++.|+.+.+|.++... ....+..+. .+.
T Consensus 173 ~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 173 LPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp CTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred ccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 345666654333455666889999999999754 577788889999999876433 333333333 466
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC----------CCCeEEEEEe-CCCCEEEEEECCCeEEE
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG----------KRSVGVVQFD-TTKNRFLAAGDEFMIKF 624 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~i~~~~~~-~~~~~l~~~~~dg~i~i 624 (954)
..+|+|||+.++++. +..|++||...... ..+..+. ...+..++|+ |+|+++++++ ++.|++
T Consensus 249 ~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-----GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp EEEEEESSSCEEEEE-----TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred eeeEcCCCCEEEEEe-----CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 779999999998874 33599999954443 3554421 1257889999 9999999888 789999
Q ss_pred EECCCCceeEEEecCCCCC-CcceEEECCCCCEEEEEeCCCcEE-EEEccCCCeeEEEeccccccceecchhccccCCcc
Q 002196 625 WDMDNVNLLASIDADGGLQ-ASPCIRFNKEGILLAVSTNDNGIK-ILANADGIRLLRTVESRTFDASRVASAAIVKAPAI 702 (954)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 702 (954)
|+..++.... +. .+.. .+..++|+ ||+.|++++.++.+. +|++.++ .. ..+.++...+..+
T Consensus 322 ~~~~~~~~~~-~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~-~~l~~~~~~~~~~----------- 384 (1045)
T 1k32_A 322 QDVSGTYVLK-VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-KA-EKFEENLGNVFAM----------- 384 (1045)
T ss_dssp ECTTSSBEEE-CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-CE-EECCCCCCSEEEE-----------
T ss_pred EcCCCCceEE-cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-Cc-eEecCCccceeee-----------
Confidence 9998876543 33 2244 68899999 999999999888888 8898776 22 2232433332221
Q ss_pred ccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEE
Q 002196 703 GTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRL 782 (954)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 782 (954)
.++++++.+++++.++.+++||+.+. ....+. .+|...+.++
T Consensus 385 -------------------------------~~SpDG~~la~~~~~~~v~~~d~~tg----~~~~~~---~~~~~~v~~~ 426 (1045)
T 1k32_A 385 -------------------------------GVDRNGKFAVVANDRFEIMTVDLETG----KPTVIE---RSREAMITDF 426 (1045)
T ss_dssp -------------------------------EECTTSSEEEEEETTSEEEEEETTTC----CEEEEE---ECSSSCCCCE
T ss_pred -------------------------------EECCCCCEEEEECCCCeEEEEECCCC----ceEEec---cCCCCCccce
Confidence 23566888899999999999998742 222221 1367788999
Q ss_pred EEecCCceEEEeecCC----------eEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEec
Q 002196 783 IYTNSGLAILALASNA----------VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 852 (954)
Q Consensus 783 ~~spdg~~l~~~~~dg----------~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s 852 (954)
+|||||++|++++.++ .+++||+. +++... +.. |...+.+++|+
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----------------------~g~~~~--l~~--~~~~~~~~~~s 480 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME----------------------GRKIFA--ATT--ENSHDYAPAFD 480 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT----------------------TTEEEE--CSC--SSSBEEEEEEC
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECC----------------------CCcEEE--eeC--CCcccCCceEc
Confidence 9999999998887643 77777643 333221 333 66778889999
Q ss_pred cCCCeEEEec-CCeEEEEEccccc-------------------------------------------EEEeeCCCCCCee
Q 002196 853 KNDSYVMSAS-GGKISLFNMMTFK-------------------------------------------TMTTFMPPPPAAT 888 (954)
Q Consensus 853 ~dg~~la~~s-dg~i~iwd~~~~~-------------------------------------------~~~~~~~h~~~v~ 888 (954)
|||++|++++ ++...+|+..... .+..+..|.+.+.
T Consensus 481 pdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~ 560 (1045)
T 1k32_A 481 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 560 (1045)
T ss_dssp TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred CCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChh
Confidence 9999999887 5666666532211 1223445667789
Q ss_pred EEEecCCCCceEEE-------------EecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCccee
Q 002196 889 FLAFHPQDNNIIAI-------------GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 889 ~l~~sp~d~~~las-------------gs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
.++|+| ||+++++ ...+..|++||+.+++.. .+. ..+.+++|||||++|++++.| .|+
T Consensus 561 ~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~ 631 (1045)
T 1k32_A 561 MIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKI 631 (1045)
T ss_dssp EEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCE
T ss_pred heEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEE
Confidence 999999 8887775 123557889999988753 333 568899999999999999877 444
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.7e-33 Score=305.32 Aligned_cols=295 Identities=15% Similarity=0.208 Sum_probs=241.2
Q ss_pred ccCCCCCCeEEEEEccC----CCEEEEEEcCCEEEEEEeeCCcceeeeeeee--cccCCEEEEEEecC----CCceEEEE
Q 002196 413 LSSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYP----NKQLSVVT 482 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spd----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~~----~~~~~l~s 482 (954)
+..+|..+|++++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ ++ +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999994 5567777778899999999887665333222 26688999999999 44 7999
Q ss_pred EcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec-cCCccEEEEEecCCeEEEEeCCCCCceeEe---eCCCCceEEEE
Q 002196 483 CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMA 558 (954)
Q Consensus 483 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~ 558 (954)
|+.||.|++||+.+++.+..+.+|...|.+++|++ ++ .++++++.||.|++||+++.+....+ ..+...|.+++
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP--NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT--TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC--CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 99999999999999999999999999999999998 44 79999999999999999988777776 56788999999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe----------------------------cCCCCCeEEEEEeCCC
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH----------------------------GLGKRSVGVVQFDTTK 610 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~----------------------------~~~~~~i~~~~~~~~~ 610 (954)
|+|+++++++++.++. |++||+++++....+. .|.. .|.+++|+ +
T Consensus 169 ~~~~~~~l~~~~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~ 241 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHS----LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--G 241 (366)
T ss_dssp ECTTSSEEEEEETTSC----EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--T
T ss_pred ECCCCCEEEEecCCCC----EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--C
Confidence 9999999999987554 9999999875443322 2555 89999998 7
Q ss_pred CEEEEEECCCeEEEEECCCCce--------------eEEEecCCCCCCcceEEECCC--CCEEEEEeCCCcEEEEEccCC
Q 002196 611 NRFLAAGDEFMIKFWDMDNVNL--------------LASIDADGGLQASPCIRFNKE--GILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+++++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 7999999999999999987644 5666655 568999999999 999999999999999999876
Q ss_pred CeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccc
Q 002196 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 754 (954)
Q Consensus 675 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw 754 (954)
......
T Consensus 320 ~~~~~~-------------------------------------------------------------------------- 325 (366)
T 3k26_A 320 DPHKAK-------------------------------------------------------------------------- 325 (366)
T ss_dssp SGGGCE--------------------------------------------------------------------------
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 210000
Q ss_pred ccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeecc
Q 002196 755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (954)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~ 806 (954)
...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 326 ------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 326 ------------CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ------------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ------------ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 0011111246889999999999999999999999999864
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.2e-33 Score=293.56 Aligned_cols=252 Identities=15% Similarity=0.250 Sum_probs=212.4
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~i 491 (954)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.+.|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 122378899999999999864 66 7999999999999
Q ss_pred EECCCCc--eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCC-----
Q 002196 492 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSAD----- 562 (954)
Q Consensus 492 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 562 (954)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998874 567788999999999999875558999999999999999987542 3456678889999999997
Q ss_pred --------CCEEEEEEeCCCCceEEEEEeCCCCe----EEEEEecCCCCCeEEEEEeCCC---CEEEEEECCCeEEEEEC
Q 002196 563 --------GARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 563 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~ 627 (954)
+++|++++.|+. |++||++++. ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~----v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNL----VKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEETTSC----EEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcCCCc----EEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 578999987654 9999998765 5667888877 89999999984 89999999999999999
Q ss_pred CCCc---eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 628 DNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 628 ~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.+.. ....+....+...|.+++|+|+|++|++++.||.|++|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 8743 122332234466899999999999999999999999999763
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-35 Score=321.17 Aligned_cols=286 Identities=13% Similarity=0.065 Sum_probs=223.2
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCC--ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
+.++|++++|+|+|+ +|++|+.||.|+|||+.++ +... .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 567999999999999 7899999999999999887 3332 26789999999999999999
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc---eEEEecc-CCC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT---KQYIFEG-HES 508 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~-~~~ 508 (954)
|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773333336778999999999999999 68999999999999999887 4778887 999
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCC------------------CceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------------------GSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
.|.+++|++++ .+|++++.|+.|++||++.. .....+ .+...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999999865 79999999999999998532 222333 6677899999999999999998
Q ss_pred eCCCCceEEEEEeCCCCeE----EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc---------------
Q 002196 571 TNKEGESYLVEWNESEGAV----KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--------------- 631 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 631 (954)
.++ .|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 HDS----SVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp TTT----EEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred CCC----cEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 644 599999999876 777888876 89999999999999888777666 66654211
Q ss_pred ------------------------eeEEEec-----------CCCCCCcceEEECCC-CC---EEEEEeCCCcEEEEEc
Q 002196 632 ------------------------LLASIDA-----------DGGLQASPCIRFNKE-GI---LLAVSTNDNGIKILAN 671 (954)
Q Consensus 632 ------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~s~~~dg~i~iwd~ 671 (954)
....... ..|...|+++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 115678999997653 33 6999999999999985
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-33 Score=306.19 Aligned_cols=282 Identities=13% Similarity=0.135 Sum_probs=211.6
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCC---ceEEEEEeCCCCeE--------E--EEEecCCCCCeEEEEEeCCCCEEEEEE
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEG---ESYLVEWNESEGAV--------K--RTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~---~~~i~iwd~~~~~~--------~--~~~~~~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
+.+|++++|+||+++|++|+.+... +..|++|++..+.. . ..+..+.. .+.++++ +++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~-~v~s~~~--~~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD-SPTAIDA--SKGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC-CCCEEEE--ETTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC-ceEEEEe--CCCEEEEEE
Confidence 4589999999999999998754432 34699999865421 1 23445544 5666655 566777764
Q ss_pred -----------CCCeEEEEECCCCcee-E---EEec---CCCCCCcceEEECCCCCEEEEEe--CCCcEEEEEccCCCee
Q 002196 618 -----------DEFMIKFWDMDNVNLL-A---SIDA---DGGLQASPCIRFNKEGILLAVST--NDNGIKILANADGIRL 677 (954)
Q Consensus 618 -----------~dg~i~iwd~~~~~~~-~---~~~~---~~~~~~v~~v~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~ 677 (954)
.|+.+++|++.+.... . .... ......+.+++|+|||+++++++ .|++|++||+.++ +.
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cE
Confidence 4678999998764322 1 1111 12234578999999999987554 6899999999887 33
Q ss_pred EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccc
Q 002196 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (954)
Q Consensus 678 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~ 757 (954)
...+.
T Consensus 170 ~~~~~--------------------------------------------------------------------------- 174 (365)
T 4h5i_A 170 KFEIE--------------------------------------------------------------------------- 174 (365)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEEeC---------------------------------------------------------------------------
Confidence 32221
Q ss_pred cccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccC
Q 002196 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 837 (954)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~ 837 (954)
|...|.+++|+|||+++++++.++. .+|+.. ..........
T Consensus 175 -----------------~~~~V~~v~fspdg~~l~s~s~~~~-~~~~~~---------------------~~~~~~~~~~ 215 (365)
T 4h5i_A 175 -----------------TRGEVKDLHFSTDGKVVAYITGSSL-EVISTV---------------------TGSCIARKTD 215 (365)
T ss_dssp -----------------CSSCCCEEEECTTSSEEEEECSSCE-EEEETT---------------------TCCEEEEECC
T ss_pred -----------------CCCceEEEEEccCCceEEeccceeE-EEEEec---------------------cCcceeeeec
Confidence 4456889999999999999886654 444322 1111222222
Q ss_pred CCCCCCCCccEEEeccCCCeEEEec-CC----eEEEEEcccccE----EEeeCCCCCCeeEEEecCCCCceEEEEecCcc
Q 002196 838 SDTNPEDAVPCFALSKNDSYVMSAS-GG----KISLFNMMTFKT----MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908 (954)
Q Consensus 838 ~~~~~~~~v~~~~~s~dg~~la~~s-dg----~i~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~ 908 (954)
.+ |...|.+++|+||++++++++ |+ .+++|++..+.. ...+.+|...|++++||| ||++||+|+.|++
T Consensus 216 ~~--~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~ 292 (365)
T 4h5i_A 216 FD--KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNS 292 (365)
T ss_dssp CC--TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSC
T ss_pred CC--CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCE
Confidence 33 788999999999999999998 65 588999876543 346778999999999999 9999999999999
Q ss_pred EEEEeccccceEEEe-cCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 909 IQIYNVRVDEVKTKL-KGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 909 i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|+|||+.+++++.++ .+|...|++|+|||||++|||||.|++|||
T Consensus 293 V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 293 IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 999999999999875 799999999999999999999999999997
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=307.23 Aligned_cols=360 Identities=13% Similarity=0.163 Sum_probs=252.6
Q ss_pred CCCeEEEEECCCCceEEEeccCCCCeEEEeeec-cCCccEEEEEecCCeEEEEeCCCCCceeEee-------------CC
Q 002196 485 EDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------AP 550 (954)
Q Consensus 485 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~~ 550 (954)
.++.+++|++..++....+.+|.+.|.+++|+| ++ .+|++++.||.|++||+.+......+. .+
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 345678898888888899999999999999998 55 799999999999999999876554432 47
Q ss_pred CCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC---CEEEEEECCCeEEEEE
Q 002196 551 GHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWD 626 (954)
Q Consensus 551 ~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd 626 (954)
...|.+++|+| ++.++++++.++ .|++||+.+++....+... . .+.++.++|.+ .++++++.||.|++||
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDK----TLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTS----EEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeCCC----eEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 77999999999 777888887644 5999999999988888743 3 78899998854 5999999999999999
Q ss_pred CCCCceeEEEecCCCCCCcceEEECCCCC-EEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccc
Q 002196 627 MDNVNLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (954)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 705 (954)
+.+++.+..+..+ ...|.+++|+|++. ++++++.||.|++||+.++......+..+......
T Consensus 173 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------- 235 (408)
T 4a11_B 173 LKSGSCSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ--------------- 235 (408)
T ss_dssp SSSSCCCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC---------------
T ss_pred CCCcceeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce---------------
Confidence 9999999888765 56899999999998 69999999999999998874444444322211000
Q ss_pred cCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEe
Q 002196 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (954)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 785 (954)
........|...|.+++|+
T Consensus 236 -------------------------------------------------------------~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 236 -------------------------------------------------------------AVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp -------------------------------------------------------------CTTTSSCSCSSCEEEEEEC
T ss_pred -------------------------------------------------------------eeccccccccCceeEEEEc
Confidence 0000112377899999999
Q ss_pred cCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCe
Q 002196 786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGK 865 (954)
Q Consensus 786 pdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~ 865 (954)
|++++|++++.||.+++|++........- .+... .. ........+.....+.+++++.++.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKVC----NN-SKKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCCC----CC-CSSCCCCEECCSSSSCEEEEEETTE
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceec--------------ccccc----cc-ccccceeEEecCCCceEEEEecCCE
Confidence 99999999999999999998753221000 00000 00 0111222223333444455545999
Q ss_pred EEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEec-CCCeEEE
Q 002196 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN-TLNVLVS 944 (954)
Q Consensus 866 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~s 944 (954)
|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +...+.+
T Consensus 316 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 391 (408)
T 4a11_B 316 IAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSS 391 (408)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-----------------------------
T ss_pred EEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecc
Confidence 99999999999999999999999999999 9999999999999999999999887766544322 23333 3344556
Q ss_pred ecCCcceec
Q 002196 945 SGADSQVRN 953 (954)
Q Consensus 945 ~s~Dg~I~i 953 (954)
++.|+.++|
T Consensus 392 ~~~~~~~~~ 400 (408)
T 4a11_B 392 SDEEGGTSA 400 (408)
T ss_dssp ---------
T ss_pred cCccCceee
Confidence 777777764
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=305.40 Aligned_cols=303 Identities=15% Similarity=0.233 Sum_probs=241.3
Q ss_pred cCCCCeeEEEEcC-CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCC
Q 002196 354 NQGSAVKSMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT 431 (954)
Q Consensus 354 ~h~~~V~~~~~sp-~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 431 (954)
.|.+.|++++|+| +++ +|++|+.||.|++||+.+++........... ........+|...|.+++|+| +++
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVC------SIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEE------EECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccc------cccccccccCCCcEEEEEEccCCCc
Confidence 3999999999999 888 8899999999999999988765432111000 000111346999999999999 788
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCc-eEEEEEcCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ-LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
+|++++.||.|++||+.+++... .+ .+...+.++.|++.+.. .++++++.|+.|++||+.+++.+..+.+|...|
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred EEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 99999999999999999987665 33 37788999999985321 168999999999999999999999999999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCce-eEe---------------eCCCCceEEEEECCCCCEEEEEEeCCC
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDY---------------DAPGHSSTMMAYSADGARLFSCGTNKE 574 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~---------------~~~~~~v~~~~~s~~g~~l~~~~~~~~ 574 (954)
.+++|++++. .++++++.||.|++||+++.... ..+ ..+...|.+++|+|++++|++++.++.
T Consensus 190 ~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 190 LAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 9999998763 36999999999999999876522 222 356678999999999999999987554
Q ss_pred CceEEEEEeCCCCeEEEEEecCC----CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEE
Q 002196 575 GESYLVEWNESEGAVKRTYHGLG----KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (954)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (954)
|++||+.+++....+..+. ...+........+..+++++.++.|++||+.+++.+..+..| ...|.+++|
T Consensus 269 ----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~ 342 (408)
T 4a11_B 269 ----MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKTVDCCVF 342 (408)
T ss_dssp ----EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC--SSCEEEEEE
T ss_pred ----EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC--CCeEEEEEE
Confidence 9999999887655443221 111222223344567777788999999999999999999866 568999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCC
Q 002196 651 NKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+|++++|++++.||.|++||+.++
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC-
T ss_pred cCCCCEEEEECCCCeEEEEeCCCC
Confidence 999999999999999999999887
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-33 Score=317.25 Aligned_cols=311 Identities=13% Similarity=0.115 Sum_probs=232.7
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce--EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEE
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~i 535 (954)
...+|...|++++|+|.+.. +|++|+.||.|+|||+.++.. ...+.+|.+.|++++|+|.. +.+|++++.||+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~-~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPS-TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTT-CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSSSCEEE
T ss_pred cCCCCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEE
Confidence 45678889999999996555 699999999999999987764 44556899999999999743 379999999999999
Q ss_pred EeCCCCCceeEeeCCC--CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-E
Q 002196 536 WLYDNLGSRVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-R 612 (954)
Q Consensus 536 wd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 612 (954)
||+++.........+. ..+.+++|+|++++|++++.++ .|++||++ ++.+..+.+|.. .|.+++|+|++. +
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg----~i~~wd~~-~~~~~~~~~h~~-~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG----NVILLNMD-GKELWNLRMHKK-KVTHVALNPCCDWF 265 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS----BEEEEESS-SCBCCCSBCCSS-CEEEEEECTTCSSE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC----cEeeeccC-cceeEEEecccc-eEEeeeecCCCceE
Confidence 9998654433333322 3678899999999999997654 49999986 455667778776 899999999886 7
Q ss_pred EEEEECCCeEEEEECCCCceeEEEe-cCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceec
Q 002196 613 FLAAGDEFMIKFWDMDNVNLLASID-ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (954)
Q Consensus 613 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 691 (954)
+++++.|+.|++||+++.+....+. ...|...|++++|+|+|.+|++++.||.|++||+.++ .....+..|.....
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~-- 342 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHF-- 342 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCC--
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEeccccccc--
Confidence 7889999999999998876544432 2245678999999999999999999999999999887 33333333221100
Q ss_pred chhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecC
Q 002196 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 771 (954)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~ 771 (954)
T Consensus 343 -------------------------------------------------------------------------------- 342 (435)
T 4e54_B 343 -------------------------------------------------------------------------------- 342 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEe
Q 002196 772 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (954)
Q Consensus 772 ~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 851 (954)
....+....|+|++..++ +++
T Consensus 343 ---~~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~ 363 (435)
T 4e54_B 343 ---QHLTPIKAAWHPRYNLIV--------------------------------------------------------VGR 363 (435)
T ss_dssp ---SSSCCCBCEECSSSSCEE--------------------------------------------------------EEC
T ss_pred ---ccceeEEEEEcCCCCEEE--------------------------------------------------------EEE
Confidence 001111234555544333 344
Q ss_pred ccCCCeEEEec--CCeEEEEEcccccEEEeeC-CCCCCeeEE-EecCCCCceEEEEecCccEEEEeccccceE
Q 002196 852 SKNDSYVMSAS--GGKISLFNMMTFKTMTTFM-PPPPAATFL-AFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (954)
Q Consensus 852 s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~-~h~~~v~~l-~~sp~d~~~lasgs~dg~i~iwd~~~~~~~ 920 (954)
++++..++++. ++.|++||..+++.+..+. +|...|.++ +|+| +|++||+|+ |+.|+||++++|+..
T Consensus 364 ~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred cCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence 55666555554 4679999999999998865 677888887 6999 999999886 789999999998753
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=314.35 Aligned_cols=315 Identities=8% Similarity=0.062 Sum_probs=235.1
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
.-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~-- 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFEL-- 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEe--
Confidence 4558999999999999999999999999 755443 346899999999999998 345555555
Q ss_pred CCceEEEec-cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC-----ceEEEEECCCCCEEEEE
Q 002196 496 TGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-----SSTMMAYSADGARLFSC 569 (954)
Q Consensus 496 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~ 569 (954)
++....+. .|...|.+++|+|++ .+|++++.||.|++||... ....+. +.. .+.+++|||||++|+++
T Consensus 74 -~~~~~~~~~~~~~~V~~vawSPdG--~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 74 -AQQNGLLNSQPVCYPRVCKPSPID--DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp -CCSSCSSTTSCSCCEEEEEECSSS--SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred -CCCceEeecCCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 33222333 468889999999866 7999999999999999554 333334 443 59999999999999999
Q ss_pred EeCCCCceEEEEEeCCCCe-------EEEEE----ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce---eEE
Q 002196 570 GTNKEGESYLVEWNESEGA-------VKRTY----HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL---LAS 635 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~-------~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~ 635 (954)
+.|+ .|++||+.++. .+.++ .+|. ..|.+++|+|+| +++++.|+.|++||+.++.. ..+
T Consensus 148 s~DG----tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 148 NEDG----ELQFFSIRKNSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp ETTS----EEEEEECCCCTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred cCCC----EEEEEECCCCccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 8754 59999999885 35666 4444 489999999998 88999999999999988774 345
Q ss_pred EecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccc
Q 002196 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (954)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (954)
+.. .+...|.+++|+ |+.||+++ ++.|++||+.++ +......+
T Consensus 221 L~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~-~~~~~~~g-------------------------------- 263 (588)
T 2j04_A 221 IQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY-SISSLKTG-------------------------------- 263 (588)
T ss_dssp EEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT-EEEEEECS--------------------------------
T ss_pred ecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC-eEEEEEcC--------------------------------
Confidence 532 235689999999 68999887 699999999876 22111111
Q ss_pred ccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEE--ecCCceEEE
Q 002196 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY--TNSGLAILA 793 (954)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~l~~ 793 (954)
|...+..++| +||+..+++
T Consensus 264 -----------------------------------------------------------h~~~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 264 -----------------------------------------------------------SLENFHIIPLNHEKESTILLM 284 (588)
T ss_dssp -----------------------------------------------------------CCSCCCEEEETTCSSCEEEEE
T ss_pred -----------------------------------------------------------CCceEEEEEeeeCCCCCEEEE
Confidence 5566777888 888888888
Q ss_pred eecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEccc
Q 002196 794 LASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMT 873 (954)
Q Consensus 794 ~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~ 873 (954)
++.+|+ ++|.+. .++++||+..+|+. |+++++|+...
T Consensus 285 a~edG~-klw~~d-----------------------------------------~~~~spd~~l~a~~-d~~v~lW~~~g 321 (588)
T 2j04_A 285 SNKTSY-KVLLED-----------------------------------------ELHVTADNIIAPYL-EKKFKKWSTIW 321 (588)
T ss_dssp CSSCEE-EEEESS-----------------------------------------SEEEECCCSSHHHH-HHHHHHTTTTT
T ss_pred EcCCCC-EEEeec-----------------------------------------cEEECCCceEEEEc-CCEEEEEECCC
Confidence 888888 888532 24577777766665 67777776643
Q ss_pred ccEEEeeCCCCCCeeEEEecCCCCceEEEEe
Q 002196 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (954)
Q Consensus 874 ~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs 904 (954)
+. ...+.+ ...|.+++||| ||+.+|+++
T Consensus 322 ~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 322 NE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp TS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred Cc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 33 334443 44577777777 777777665
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=308.76 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=241.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 356899999999999 899999999999 6444322 46899999999999999
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC-----C
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES-----P 509 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~ 509 (954)
.++.+.+|+.+....+ .+ .|...|.+++|||+|+ .|++++.||.|++||... ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4555555554332211 22 4688999999999999 699999999999999544 666777 665 4
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-------eeEe----eCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-------RVDY----DAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
|.+++|+|++ ++|++|+.||+|++||+..... ...+ ..|...|.+++|+|+| +++++.|+ .
T Consensus 132 v~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~----t 203 (588)
T 2j04_A 132 YHCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN----S 203 (588)
T ss_dssp EEEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC----C
T ss_pred EEEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC----e
Confidence 9999998866 8999999999999999988653 2333 4456799999999999 66666544 4
Q ss_pred EEEEeCCCCeE---EEEEe-cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEE--CC
Q 002196 579 LVEWNESEGAV---KRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--NK 652 (954)
Q Consensus 579 i~iwd~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s~ 652 (954)
+++||+.++.. ..++. +|. ..|.+++|+ ++.+++++ ++.|++||+.+++......+ |...|..++| +|
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~ 277 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEK 277 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCS
T ss_pred EEEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCC
Confidence 99999988773 35664 454 489999999 68888887 69999999998777444333 4778999999 99
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCC
Q 002196 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (954)
Q Consensus 653 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (954)
++..+++++.||+ ++|.... +.
T Consensus 278 d~~~La~a~edG~-klw~~d~----~~----------------------------------------------------- 299 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLEDE----LH----------------------------------------------------- 299 (588)
T ss_dssp SCEEEEECSSCEE-EEEESSS----EE-----------------------------------------------------
T ss_pred CCCEEEEEcCCCC-EEEeecc----EE-----------------------------------------------------
Confidence 9999999999999 9998761 00
Q ss_pred CCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec
Q 002196 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS 796 (954)
Q Consensus 733 ~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 796 (954)
+.+++..+++ .|+++++|+...... .. -.+...|.+++|||||+.+|+++.
T Consensus 300 --~spd~~l~a~--~d~~v~lW~~~g~~l----~~-----~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 300 --VTADNIIAPY--LEKKFKKWSTIWNEF----NN-----YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp --EECCCSSHHH--HHHHHHHTTTTTTSS----SS-----SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred --ECCCceEEEE--cCCEEEEEECCCCce----ee-----eccceEEEEEEECCCCCEEEEEEe
Confidence 1123333344 389999999854221 11 113567999999999998888774
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=288.05 Aligned_cols=239 Identities=16% Similarity=0.248 Sum_probs=210.8
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
+.+|.+.|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP 87 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence 6789999999999 999999999999999999998876555 6778999999999999999 799999999999999
Q ss_pred CCCC---ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECC-CCCEEEEE
Q 002196 494 AVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGARLFSC 569 (954)
Q Consensus 494 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~ 569 (954)
+... +.+..+.+|...|.+++|. + .++++++.||.|++|| .......+..+...+.++.|+| ++..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSFQ--D--GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEec--C--CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 8764 5677889999999999983 3 6899999999999999 4556667778888999999998 89999999
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEE
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (954)
+.++. +++|| .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+..+..+ ...|.+++
T Consensus 162 ~~d~~----i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~ 232 (313)
T 3odt_A 162 SADKT----IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIK 232 (313)
T ss_dssp ETTSC----EEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEE
T ss_pred ECCCC----EEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEE
Confidence 87554 99999 56777778774455899999999987 999999999999999999999999866 56899999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 650 FNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 650 ~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
|+|++ .|++++.||.|++||+.++
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EecCC-CEEEEecCCEEEEEECCCC
Confidence 99999 5889999999999999887
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=298.20 Aligned_cols=252 Identities=14% Similarity=0.195 Sum_probs=206.8
Q ss_pred ccCCCCCCeEEEEEccCCCEEE-EEEc---CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC---CCceEEEEEcC
Q 002196 413 LSSDYTASVNRVMWSPDGTLFG-VAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGE 485 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~-s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~~l~s~~~ 485 (954)
.+.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ +. ++++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 3567999999999999997655 5554 89999999998875432 23479999999999999 46 6999999
Q ss_pred CCeEEEEECCCCc-eEEEeccCCCCeEEEeeec----cCCccEEEEEecCCeEEEEeCCCCC-ceeEeeCCCC----ceE
Q 002196 486 DRVIKVWDAVTGT-KQYIFEGHESPVYSICPHH----KENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGH----SST 555 (954)
Q Consensus 486 dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~----~v~ 555 (954)
||.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+++.. ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999988 8899999999999997643 3455899999999999999999876 4555544333 788
Q ss_pred EEE----ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC---CCCEEEEEECCCeEEEEECC
Q 002196 556 MMA----YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT---TKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 556 ~~~----~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~ 628 (954)
+++ |+|+++++++++.++ .|++||+++++.... ..+.. .+.+++|+| ++.++++++.||.|++||++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNG----DIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTS----EEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCC----eEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 888 789999999998644 599999999987554 44444 899999999 89999999999999999998
Q ss_pred CCceeEEEe---cCCCCCCcceEEECCCCC-EEEEEeCCCcEEEEEccCC
Q 002196 629 NVNLLASID---ADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG 674 (954)
Q Consensus 629 ~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iwd~~~~ 674 (954)
+++....+. ...+...|.+++|+|+++ +|++++.||.|++||+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 876554443 113466899999999998 8999999999999999876
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=284.90 Aligned_cols=282 Identities=14% Similarity=0.253 Sum_probs=236.7
Q ss_pred eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc
Q 002196 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~ 438 (954)
.++|+||+++ +||+|. |++|+|||+.+++.+.... +.+|...|++++|+|++++|++|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5689999986 677764 8999999999998775411 4578899999999999999999999
Q ss_pred CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeEEEeeec
Q 002196 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHH 517 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~ 517 (954)
||+|++|++++++.+. .+.+|...+.++.+. +. ++++++.++.+++|+...+ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999998776 678899988876654 55 6999999999999998876 45677889999999999887
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCCce----eEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEE
Q 002196 518 KENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (954)
Q Consensus 518 ~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 593 (954)
.+ .++++++.|+.|++||+++.+.. .....+...+.++.++|++..++.... +..+..|++||..........
T Consensus 161 ~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 DG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred CC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 66 79999999999999999876532 334556678999999998776554332 233667999999988877766
Q ss_pred ecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 594 HGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 594 ~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
.... .+..+.|+|++..+++++ .|+.|++||+.+++++..+.+| ...|++++|+|+|++|++|+.||+|++||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 688999999999988765 7999999999999999999866 668999999999999999999999999998
Q ss_pred cCC
Q 002196 672 ADG 674 (954)
Q Consensus 672 ~~~ 674 (954)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=309.42 Aligned_cols=300 Identities=13% Similarity=0.191 Sum_probs=231.3
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCC------------CC
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT------------AS 420 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 420 (954)
+.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 45678999999999999 789999999999999998763110000 0000011256787 88
Q ss_pred eEEEEEccCC--CEEEEEEcCCEEEEEEeeCCcceee------------------------------------e-eeeec
Q 002196 421 VNRVMWSPDG--TLFGVAYSKHIVHLYTYHGGDELRN------------------------------------H-LEIEA 461 (954)
Q Consensus 421 V~~l~~spdg--~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------~-~~~~~ 461 (954)
|.+++|+|++ .+|++++.|+.|++||+.++..... . ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 8999999999999999987443100 0 11367
Q ss_pred ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC-CceEE-------EeccCCCCeEEEeeeccCCccEEEEEecCCeE
Q 002196 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQY-------IFEGHESPVYSICPHHKENIQFIFSTATDGKI 533 (954)
Q Consensus 462 h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i 533 (954)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .++++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 68888 799999999984 44444 2568999999999987642 699999999999
Q ss_pred EEEeCCCCCc----eeEeeCCCC------------ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecC
Q 002196 534 KAWLYDNLGS----RVDYDAPGH------------SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGL 596 (954)
Q Consensus 534 ~iwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 596 (954)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+++ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998776 566666664 8999999999999998874 3599999997 8888888877
Q ss_pred CCC-----------C---eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec------------------------
Q 002196 597 GKR-----------S---VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA------------------------ 638 (954)
Q Consensus 597 ~~~-----------~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------ 638 (954)
... . +..++|+|++++|++++.||.|++||+.+++.+.....
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 420 0 22489999999999999999999999999877642211
Q ss_pred ------CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 639 ------DGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 639 ------~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
......|..++|+|++.+||+++.++ +++|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 01234688999999999999998775 778764
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=311.55 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=199.7
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC--cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG--DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
..+.++|++++|+|+|++|++|+.|+.|++||+.++ +... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 4443 6789999999999999998 69999999999999
Q ss_pred ECCCCc---eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc---eeEeeC-CCCceEEEEECCCCCE
Q 002196 493 DAVTGT---KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDA-PGHSSTMMAYSADGAR 565 (954)
Q Consensus 493 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~~ 565 (954)
|+.+++ ....+.+|...|.+++|++++ .+|++++.|+.|++||+++... ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 677888999999999999865 7999999999999999998763 455555 7889999999999999
Q ss_pred EEEEEeCCCCceEEEEEeCC------------------CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002196 566 LFSCGTNKEGESYLVEWNES------------------EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (954)
|++++.++. |++||+. .++.+..+ .|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 161 l~~~~~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 161 LAAGCADRK----AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEESSSC----EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEEeCCCE----EEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999987654 9999985 35566666 6655 8999999999999999999999999999
Q ss_pred CCCce----eEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 628 DNVNL----LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 628 ~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
.+++. +..+..| ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99887 6666655 5689999999999999998877665 66654
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.2e-32 Score=285.83 Aligned_cols=248 Identities=13% Similarity=0.187 Sum_probs=205.7
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCC--ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--C
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--D 429 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 429 (954)
+|.+.|++++|+|+|+ +||+|+.||+|+|||+.++ +.+. .+.+|.++|.+++|+| +
T Consensus 7 ~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGG
T ss_pred CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCc
Confidence 4999999999999999 7899999999999999754 2222 2678999999999987 4
Q ss_pred CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEEEECCCCc--eEEEecc
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGT--KQYIFEG 505 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~ 505 (954)
+++|++|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++||++++. ....+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 899999999999999999887422 22257789999999999998 66 79999999999999998763 2467789
Q ss_pred CCCCeEEEeeeccC-----------CccEEEEEecCCeEEEEeCCCCC----ceeEeeCCCCceEEEEECCCC---CEEE
Q 002196 506 HESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYSADG---ARLF 567 (954)
Q Consensus 506 ~~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g---~~l~ 567 (954)
|...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++ .+|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 99999999999863 24689999999999999998765 334567788899999999995 7899
Q ss_pred EEEeCCCCceEEEEEeCCCCe---EEEEE--ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 568 SCGTNKEGESYLVEWNESEGA---VKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 568 ~~~~~~~~~~~i~iwd~~~~~---~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
+++.|+. |++||++++. ....+ ..+.. .+.+++|+|++++|++++.||.|++|+...
T Consensus 224 s~s~D~~----v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 224 SVSQDRT----CIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEETTSC----EEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEECCCc----EEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9887554 9999987642 22223 33444 899999999999999999999999999763
No 92
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4e-31 Score=330.27 Aligned_cols=428 Identities=13% Similarity=0.078 Sum_probs=315.8
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
+.+.+.+.+|||+ .|+.++. +.|++|++.+++... +.+|...+.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~---~iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD---RIIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT---EEEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC---EEEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567889999964 4455444 789999999886543 567999999999999999999
Q ss_pred EEEcC------CEEEEEEeeCCcceeeeeeeecccCCE-------EEEEEecCCCceEEEEEcCC------CeEEEEECC
Q 002196 435 VAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSV-------NDLAFSYPNKQLSVVTCGED------RVIKVWDAV 495 (954)
Q Consensus 435 s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~~~~~~~l~s~~~d------g~i~iwd~~ 495 (954)
+++.+ ..|++|++.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88654 3799999988763 3 577788888 9999999998 57777754 468888887
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEec------------CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCC
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 563 (954)
++.... +..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 33332 34566776 4 7777753 334566654433445555777889999999988
Q ss_pred CEEEEEEeCCCCceEEEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC--
Q 002196 564 ARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG-- 640 (954)
Q Consensus 564 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 640 (954)
..++++..+ +. +.+|.+.. +.....+..+. .+...+|+|+|+.++.+. ++.|++||+... .+..+..+.
T Consensus 215 ~l~~~~~~d--g~--~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITDID--GF--GQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLE 286 (1045)
T ss_dssp EEEEEECTT--SS--CEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCC
T ss_pred EEEEEEecc--Cc--eEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCccc
Confidence 444444332 23 45554332 33334454444 356679999999888874 889999999544 344443321
Q ss_pred -------CCCCcceEEEC-CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCc
Q 002196 641 -------GLQASPCIRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 712 (954)
Q Consensus 641 -------~~~~v~~v~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 712 (954)
+...+.+++|+ |||+.|++++ ++.+++|+..++. .. .+.
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~-~~~------------------------------ 333 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VL-KVP------------------------------ 333 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EE-ECS------------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eE-Ecc------------------------------
Confidence 12358999999 9999999887 7889999876551 11 010
Q ss_pred cccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCcc-ceEEEEEecCCceE
Q 002196 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM-RVSRLIYTNSGLAI 791 (954)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l 791 (954)
.+.. .+..++|+ ||+.+
T Consensus 334 -------------------------------------------------------------~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 334 -------------------------------------------------------------EPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp -------------------------------------------------------------CCSCEEEEEECSS-SEEEE
T ss_pred -------------------------------------------------------------CCCcceEEeeeEc-CCCeE
Confidence 0233 67788999 99999
Q ss_pred EEeecCCeEE-EeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEE
Q 002196 792 LALASNAVHK-LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (954)
Q Consensus 792 ~~~~~dg~v~-lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iw 869 (954)
++++.++.+. +|++. ++.... +.+ +...+.+++|||||++||+++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYR----------------------TGKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETT----------------------TCCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECC----------------------CCCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 9988877666 66643 222222 223 678899999999999999998 8999999
Q ss_pred EcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCc----------cEEEEeccccceEEEecCCccceeEEEEecCC
Q 002196 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS----------SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939 (954)
Q Consensus 870 d~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg----------~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg 939 (954)
|+.+++....+.+|.+.+.+++||| ||++||+++.++ .|++||+.+++ +..+..|...+.+++|+|||
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 9999998888878999999999999 999999887654 99999999988 77788898999999999999
Q ss_pred CeEEEecCCcce
Q 002196 940 NVLVSSGADSQV 951 (954)
Q Consensus 940 ~~l~s~s~Dg~I 951 (954)
++|++++.++..
T Consensus 484 ~~l~~~s~~~~~ 495 (1045)
T 1k32_A 484 KNLYYLSYRSLD 495 (1045)
T ss_dssp CEEEEEESCCCC
T ss_pred CEEEEEecccCC
Confidence 999998887654
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-31 Score=293.43 Aligned_cols=283 Identities=16% Similarity=0.193 Sum_probs=237.3
Q ss_pred CCCCCe--EEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 416 DYTASV--NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 416 ~h~~~V--~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
+|...+ .++.|+ +..+++++.|+.|++|++.+++... .+. .|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 455554 445555 4668889999999999999987654 333 3889999999999999 79999999999999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC-CCceeEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
|+.+++.+..+.+|...|.+++|+ + .++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN--R--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEEC--C--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 999999999999999999999984 2 6899999999999999994 4456667788889999999999999999987
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCC-EEEEEE--CCCeEEEEECCCCceeEEEecCCCCCCcceE
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (954)
++. |++||+++++.+..+..|.. .|.+++|+|++. .+++++ .|+.|++||+.+++.+..+.. ...|.++
T Consensus 238 d~~----v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~ 309 (401)
T 4aez_A 238 DNV----VQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSL 309 (401)
T ss_dssp TSC----EEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEE
T ss_pred CCe----EEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEE
Confidence 554 99999999999999988876 899999999775 555554 699999999999999988864 3479999
Q ss_pred EECCCCCEEEEEe--CCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccc
Q 002196 649 RFNKEGILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 726 (954)
Q Consensus 649 ~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (954)
+|+|+++++++++ .||.|++|++.++ ......
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~--------------------------------------------- 343 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV--------------------------------------------- 343 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE---------------------------------------------
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE---------------------------------------------
Confidence 9999999999954 8999999998775 221111
Q ss_pred cccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeecc
Q 002196 727 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (954)
Q Consensus 727 ~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~ 806 (954)
.+ .+|...|.+++|+|+|.+|++++.||.+++|++.
T Consensus 344 ----------------------------~~----------------~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 344 ----------------------------DI----------------PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ----------------------------EE----------------ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ----------------------------Ee----------------cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 00 1266789999999999999999999999999876
Q ss_pred C
Q 002196 807 R 807 (954)
Q Consensus 807 ~ 807 (954)
.
T Consensus 380 ~ 380 (401)
T 4aez_A 380 D 380 (401)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.1e-32 Score=290.89 Aligned_cols=251 Identities=18% Similarity=0.285 Sum_probs=205.2
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~ 490 (954)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999987532 23368899999999999864 66 699999999999
Q ss_pred EEECCCC--ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce---eEeeCCCCceEEEEECCC---
Q 002196 491 VWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSAD--- 562 (954)
Q Consensus 491 iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~--- 562 (954)
+||++++ .....+.+|...|.+++|+|+.++.+|++++.|+.|++||++..... ..+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 46678889999999999999866689999999999999999875432 234456668999999997
Q ss_pred --------------CCEEEEEEeCCCCceEEEEEeCCCC---eEEEEEecCCCCCeEEEEEeCCC----CEEEEEECCCe
Q 002196 563 --------------GARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFM 621 (954)
Q Consensus 563 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~ 621 (954)
+++|++++.|+ .|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.||+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~----~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDN----LIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTS----BCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecCCC----eEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 46788887654 4999999755 46677788876 89999999986 89999999999
Q ss_pred EEEEECCCCc----eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 622 IKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 622 i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
|++|++.+.. ....+..+ ...|.+++|+|++++|++++.||.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999987631 12233333 56899999999999999999999999999863
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.9e-31 Score=298.70 Aligned_cols=273 Identities=21% Similarity=0.343 Sum_probs=237.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.|...|.|++| +++ ++++|+.||.|++||+.+++.... +.+|...|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 36678999888 676 789999999999999999887654 6789999999999 88999
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE---EEeccCCCCe
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ---YIFEGHESPV 510 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v 510 (954)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.++... ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999988765 6788999999999973 4 6999999999999999988765 6788999999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
.++++ ++ .++++++.||.|++||+++......+..+...+.++.+ ++.++++++.++. |++||+++++.+
T Consensus 260 ~~~~~--~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~----i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF--DD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT----IRLWDIECGACL 329 (435)
T ss_dssp EEEEE--ET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC----EEEEETTTCCEE
T ss_pred EEEEe--CC--CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe----EEEEECCCCCEE
Confidence 99998 23 79999999999999999999888888888889999998 5789999887554 999999999999
Q ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc---------eeEEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---------LLASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
..+.+|.. .+.+++| ++.++++|+.||.|++||+.++. .+..+..| ...|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEe
Confidence 99998877 8998888 78899999999999999997765 67777655 668999999 788999999
Q ss_pred CCCcEEEEEccCC
Q 002196 662 NDNGIKILANADG 674 (954)
Q Consensus 662 ~dg~i~iwd~~~~ 674 (954)
.||.|++||+.+.
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999876
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.5e-32 Score=300.78 Aligned_cols=296 Identities=15% Similarity=0.205 Sum_probs=241.1
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc-CCCEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVA 436 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~ 436 (954)
....++++|+...++++|+.||.|+||++........ ....+.+|.+.|++++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4457899999887777889999999999966432210 1223678999999999999 99999999
Q ss_pred EcCCEEEEEEeeCCcce----eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe--ccCCCCe
Q 002196 437 YSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPV 510 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v 510 (954)
+.||.|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987321 223368899999999999999854 6999999999999999999999999 8899999
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-eCCCCc-eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
.+++|++++ .+|++++.||.|++||+++......+ ..+... +.++.|+|++++++++.. +..++.|++||++++.
T Consensus 180 ~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 999999855 79999999999999999988777776 556554 899999999998888732 2236679999998865
Q ss_pred E-EEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCce-eEEEecCCCCCCcceEEECCCCCEEEEEeCCCc
Q 002196 589 V-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (954)
Q Consensus 589 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~ 665 (954)
. +..........+.+++|+|+++++++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 3333323333799999999999997655 799999999999884 566655555678999999999998875 5679
Q ss_pred EEEEEccCC
Q 002196 666 IKILANADG 674 (954)
Q Consensus 666 i~iwd~~~~ 674 (954)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999886
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.5e-31 Score=296.39 Aligned_cols=279 Identities=15% Similarity=0.212 Sum_probs=228.6
Q ss_pred CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeE
Q 002196 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (954)
Q Consensus 599 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 678 (954)
..+..++|+++ +.|++| .|++|+|||..+++....+..+.+...|++++|+|+|++|++|+.||.|++||+.++ +.+
T Consensus 106 ~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~ 182 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRL 182 (420)
T ss_dssp TTCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEE
T ss_pred ccceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEE
Confidence 35677999975 566665 589999999999999999988777788999999999999999999999999999998 788
Q ss_pred EEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 679 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
+.+.+|...+..+. .++..+++++.|+.+++|+...
T Consensus 183 ~~~~~h~~~v~~~s--------------------------------------------~~~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 183 RNMTSHSARVGSLS--------------------------------------------WNSYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp EEECCCSSCEEEEE--------------------------------------------EETTEEEEEETTSEEEEEETTS
T ss_pred EEEeCCCCceEEEe--------------------------------------------eCCCEEEEEeCCCceeEeeecc
Confidence 88888877655431 2356788999999999999864
Q ss_pred ccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCC
Q 002196 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (954)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~ 838 (954)
... .... + .+|...+..+.++|+|.++++++.|+.+++|+...+... ........
T Consensus 219 ~~~--~~~~--~--~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~-------------------~~~~~~~~ 273 (420)
T 4gga_A 219 AEH--HVAT--L--SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-------------------WVPLQTFT 273 (420)
T ss_dssp SSC--EEEE--E--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC-------------------SCCSEEEC
T ss_pred cce--eeEE--e--cccccceeeeeecCCCCeeeeeeccccceEEeecccccc-------------------ceeeeeec
Confidence 221 1111 1 248899999999999999999999999999987643210 00000122
Q ss_pred CCCCCCCccEEEeccCCC-eEEE--ec-CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEe--cCccEEEE
Q 002196 839 DTNPEDAVPCFALSKNDS-YVMS--AS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM--EDSSIQIY 912 (954)
Q Consensus 839 ~~~~~~~v~~~~~s~dg~-~la~--~s-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs--~dg~i~iw 912 (954)
.|...|.+++|+|++. ++++ |+ |++|++||+.++++...+..| ..+.++.|+| ++..+++++ .|+.|+||
T Consensus 274 --~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 274 --QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp --CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEEEECTTTCCEEEE
T ss_pred --ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC-CCCeEEEEEecCCCEEEEE
Confidence 2888999999999765 4444 34 899999999999999998854 5789999999 777777654 79999999
Q ss_pred eccccceEEEecCCccceeEEEEecCCCeEEEecCCcceec
Q 002196 913 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 913 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|+.+++++.++.+|.+.|++++|||||++|||||.||+|||
T Consensus 350 d~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 350 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 99999999999999999999999999999999999999986
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.9e-31 Score=298.68 Aligned_cols=249 Identities=12% Similarity=0.213 Sum_probs=205.0
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcc--------eeeeeeeeccc------------CCEEEEEEecCC
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--------LRNHLEIEAHV------------GSVNDLAFSYPN 475 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~~~ 475 (954)
.|.+.|++++|+|+|++||+|+.||.|+||++.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4679999999999999999999999999999987652 11233678898 889999999998
Q ss_pred --CceEEEEEcCCCeEEEEECCCCceE---------------------------------------EE-eccCCCCeEEE
Q 002196 476 --KQLSVVTCGEDRVIKVWDAVTGTKQ---------------------------------------YI-FEGHESPVYSI 513 (954)
Q Consensus 476 --~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~ 513 (954)
. .+++++.|+.|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 6899999999999998764432 12 36799999999
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeE--------eeCCCCceEEEEECCCC-CEEEEEEeCCCCceEEEEEeC
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--------YDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~ 584 (954)
+|++++ .+|+++ .|+.|++||++....... +..+...|.+++|+|++ ++|++++.++. |++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~----i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT----IRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC----EEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe----EEEEEC
Confidence 999865 789998 799999999985443332 44677789999999998 89999987554 999999
Q ss_pred CCCeE----EEEEecCCC-----------CCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CceeEEEecCCCCCC----
Q 002196 585 SEGAV----KRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQA---- 644 (954)
Q Consensus 585 ~~~~~----~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 644 (954)
++++. +..+..+.. ..|.+++|+|++++|++++. +.|++||+++ ++++..+..|.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99886 677877754 27999999999999999999 9999999997 888888876632111
Q ss_pred ---------cceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 645 ---------SPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 645 ---------v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999988
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.7e-31 Score=290.18 Aligned_cols=293 Identities=17% Similarity=0.218 Sum_probs=239.5
Q ss_pred CCcceEEEec-CCCCeeEEEEcCCC--CeEEEEEEcCCeEEEEeCCC-CceeeeeeeEEEeccCCCccccccccCCCCCC
Q 002196 345 LPKTVVMTLN-QGSAVKSMDFHPVQ--QILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTAS 420 (954)
Q Consensus 345 ~~~~~~~~~~-h~~~V~~~~~sp~g--~~ll~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 420 (954)
.+...+..+. |.+.|++++|+|++ ..+|++|+.||.|+|||+.+ +..... .+.+|...
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 4556666665 99999999999995 33899999999999999997 443311 15679999
Q ss_pred eEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEE--ecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF--SYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 421 V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
|.+++|+|++++|++++.||.|++||+.+++... +.+|...|.+++| +|++. ++++++.|+.|++||+++++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999887553 5679999999999 78887 79999999999999999999
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--CCCCceEEEEECCCCCE----EEEEEeC
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGAR----LFSCGTN 572 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~----l~~~~~~ 572 (954)
.+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .......++.+.++... +++++.+
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 999988665 566665543 478899999999999998766544332 23346667777666554 8887764
Q ss_pred CCCceEEEEEeCCCC---eEEEEEecCCCC-----------CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 573 KEGESYLVEWNESEG---AVKRTYHGLGKR-----------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
+ .+++||++.. ..+..+..|... .|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 238 g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 238 G----RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp S----EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred C----cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 4 5999999887 556677766542 599999999999999999999999999999999988876
Q ss_pred CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 639 ~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
+ ...|.+++|+|+|++|++++.|+..+.|++.
T Consensus 314 ~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 L--DQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp C--SSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred C--CCCceEEEECCCCCeEEEEeccccccccccc
Confidence 5 5689999999999999999998866655543
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.5e-31 Score=289.17 Aligned_cols=281 Identities=8% Similarity=0.078 Sum_probs=236.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC-E
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-L 432 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 432 (954)
.|.+.|++++|+|+++ +|++|+.||.|+|||+.+++..... ....+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence 4889999999999998 7899999999999999887621100 01346999999999999999 9
Q ss_pred EEEEEcCCEEEEEEe-eCCcceeeeeeeec--ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC---------CceE
Q 002196 433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---------GTKQ 500 (954)
Q Consensus 433 l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~ 500 (954)
|++|+.||.|++||+ .+++. . .+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~-~---~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF-Q---ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE-E---ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce-E---eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87754 2 5778 999999999999 77 799999999999999987 7777
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC-CCc--eeEeeCCCCceEEEEECC-CCCEEEEEEeCCCCc
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-LGS--RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGE 576 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~ 576 (954)
..+. |...|.+++|+++ .+++++.|+.|++||+++ ... ......+...+.+++|+| +++++++++.++
T Consensus 145 ~~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg--- 216 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG--- 216 (342)
T ss_dssp SSSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS---
T ss_pred eEEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC---
Confidence 7776 8899999999753 399999999999999998 443 334445667899999999 999999998644
Q ss_pred eEEEEEeCCCC------eEEEEEecCCC--------CCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCC
Q 002196 577 SYLVEWNESEG------AVKRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642 (954)
Q Consensus 577 ~~i~iwd~~~~------~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 642 (954)
.+++||+... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ |.
T Consensus 217 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~ 294 (342)
T 1yfq_A 217 -RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294 (342)
T ss_dssp -EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred -cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cC
Confidence 5999999876 77777777642 37999999999999999999999999999999998887654 14
Q ss_pred CCcceEEECCCCCEEEEEeCCCc-EEEEE
Q 002196 643 QASPCIRFNKEGILLAVSTNDNG-IKILA 670 (954)
Q Consensus 643 ~~v~~v~~s~~~~~l~s~~~dg~-i~iwd 670 (954)
..|.+++ |++++|++++.||. .+.|.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 5788988 99999999999998 55444
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5e-30 Score=275.71 Aligned_cols=277 Identities=14% Similarity=0.206 Sum_probs=222.4
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
..+.++||+++ .|+++ .| ..|++||+.+++.+..+..+ +...|.+++|+|+++++++|+.||.|++||+.+++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D----~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LD----NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ET----TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred cceEEEECCCC-EEEEE-eC----CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 35679999886 66655 33 35999999999998887643 23379999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCC
Q 002196 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (954)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 711 (954)
.+..+..| ...+ .++++++.++++++.++.+++|+..........+.
T Consensus 101 ~~~~~~~h--~~~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 147 (318)
T 4ggc_A 101 RLRNMTSH--SARV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS----------------------------- 147 (318)
T ss_dssp EEEEEECC--SSCE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-----------------------------
T ss_pred eEEEecCc--cceE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEc-----------------------------
Confidence 99999866 3344 44556778999999999999999876633332222
Q ss_pred ccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceE
Q 002196 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 791 (954)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 791 (954)
+|...+..++++++++++
T Consensus 148 --------------------------------------------------------------~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 148 --------------------------------------------------------------GHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp --------------------------------------------------------------CCSSCEEEEEECTTSSEE
T ss_pred --------------------------------------------------------------CccCceEEEEEcCCCCEE
Confidence 256678889999999999
Q ss_pred EEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEE---Eec-CCeEE
Q 002196 792 LALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM---SAS-GGKIS 867 (954)
Q Consensus 792 ~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la---~~s-dg~i~ 867 (954)
++++.||.|++||+..+... ........ .+...|.+++++|++..++ +++ +++|+
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~-------------------~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGG-------------------WVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEEETTSCEEEEESSCBTTB-------------------SCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEEecCcceeEEECCCCccc-------------------ccceeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 99999999999987643210 00000111 2778899999999876543 455 79999
Q ss_pred EEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEe--cCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEe
Q 002196 868 LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM--EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (954)
Q Consensus 868 iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs--~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 945 (954)
+||........... +...+..++|+| ++..+++++ .|+.|+|||+.+++++.++.+|.+.|++++|+|||++||||
T Consensus 225 lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 225 IWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99999888776665 677899999999 777776654 79999999999999999999999999999999999999999
Q ss_pred cCCcceec
Q 002196 946 GADSQVRN 953 (954)
Q Consensus 946 s~Dg~I~i 953 (954)
|.||+|||
T Consensus 303 s~D~~v~i 310 (318)
T 4ggc_A 303 AADETLRL 310 (318)
T ss_dssp ETTTEEEE
T ss_pred ecCCeEEE
Confidence 99999986
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2e-30 Score=282.82 Aligned_cols=254 Identities=11% Similarity=0.171 Sum_probs=214.3
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcce-eeeeeeecccCCEEEEEEec--CCCceEEEEEcCCCe
Q 002196 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRV 488 (954)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~~dg~ 488 (954)
.++.+|.+.|++++|+|++++|++|+.||.|++||+.++... .....+.+|...|++++|+| +++ +|++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 346889999999999999999999999999999999876422 23346788999999999999 577 7999999999
Q ss_pred EEEEECCCC---------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-----------
Q 002196 489 IKVWDAVTG---------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD----------- 548 (954)
Q Consensus 489 i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------- 548 (954)
|++||+.++ +.+..+.+|...|.+++|+++.++.++++++.||.|++||+++......+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999887 568888999999999999987334799999999999999998776543222
Q ss_pred --CCCCceEEEEECCC---CCEEEEEEeCCCCceEEEEEeCCCCeE--EEEEecCCCCCeEEEEEeCCC----CEEEEEE
Q 002196 549 --APGHSSTMMAYSAD---GARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTK----NRFLAAG 617 (954)
Q Consensus 549 --~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~~~~ 617 (954)
.+...+.+++|+|+ +..+++++.+ +.+.+|+...+.. +..+.+|.. .|.+++|+|++ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEc
Confidence 35568999999997 8899988764 3477777777764 666777766 89999999998 8999999
Q ss_pred CCCeEEEEECCCC----------------------------------------------ceeEEEecCCCCCCcceEEEC
Q 002196 618 DEFMIKFWDMDNV----------------------------------------------NLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 618 ~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~s 651 (954)
.||.|++||+.++ +.+..+..| ...|++++|+
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s 315 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWN 315 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEEC
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEc
Confidence 9999999999864 444555544 6689999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
|++++|++++.||.|++|++.++
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTT
T ss_pred CCCCEEEEecCCCcEEEEecCcC
Confidence 99999999999999999999987
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.5e-31 Score=286.48 Aligned_cols=249 Identities=15% Similarity=0.212 Sum_probs=202.2
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCC
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 431 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 431 (954)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence 4999999999999999 789999999999999987753211 11578999999999986 489
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEEEECCCCce---EEEeccC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGH 506 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~ 506 (954)
+|++|+.|++|++||++++... ....+.+|...|.+++|+|+ +. +|++|+.|+.|++||+.++.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999886422 22357889999999999998 55 699999999999999987632 3456789
Q ss_pred CCCeEEEeeeccC---------------CccEEEEEecCCeEEEEeCCCCC---ceeEeeCCCCceEEEEECCCC----C
Q 002196 507 ESPVYSICPHHKE---------------NIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSADG----A 564 (954)
Q Consensus 507 ~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g----~ 564 (954)
...|.+++|+|.. .+.+|++|+.|+.|++||++... ....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998862 13689999999999999997543 344566788899999999987 7
Q ss_pred EEEEEEeCCCCceEEEEEeCCCC---e-EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 565 RLFSCGTNKEGESYLVEWNESEG---A-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
+|++++.|+ .|++||+.+. . ....+..|.. .|.+++|+|++++|++++.||.|++|+..
T Consensus 230 ~las~s~D~----~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQDG----RVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEETTC----EEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcCCC----eEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 899988644 5999998762 1 1223445554 89999999999999999999999999975
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=5.4e-30 Score=278.65 Aligned_cols=254 Identities=11% Similarity=0.015 Sum_probs=211.7
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCC-ceEEEEEcCCCeEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVW 492 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~~l~s~~~dg~i~iw 492 (954)
..+|.+.|++++|+|++++|++++.|+.|++|++.++........+.+|...|.+++|+|+++ . +++|+.||.|++|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~~dg~i~~w 84 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ--IYVGTVQGEILKV 84 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEE--EEEEETTSCEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcE--EEEEcCCCeEEEE
Confidence 457999999999999999999999999999999998773222335668999999999999987 5 8999999999999
Q ss_pred EC-CCCceEEEecc--CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC---------CCceeEeeCCCCceEEEEEC
Q 002196 493 DA-VTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN---------LGSRVDYDAPGHSSTMMAYS 560 (954)
Q Consensus 493 d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s 560 (954)
|+ .+++. ..+.+ |...|.+++|++ + .++++++.|+.|++||+++ ......+. +...+.+++|+
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 99 77754 77888 999999999998 4 7999999999999999986 55444444 67789999999
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCC-CeE--EEEEecCCCCCeEEEEEeC-CCCEEEEEECCCeEEEEECCCC------
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNV------ 630 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------ 630 (954)
|++ +++++.+ +.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|++...
T Consensus 160 ~~~--l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 160 SSR--LIVGMNN----SQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp SSE--EEEEEST----TEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred CCc--EEEEeCC----CeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 988 7777654 3599999988 542 233334444 899999999 9999999999999999999887
Q ss_pred ceeEEEecCCC-------CCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEec
Q 002196 631 NLLASIDADGG-------LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (954)
Q Consensus 631 ~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 682 (954)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 290 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-KKIKNFA 290 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECC
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-hHhhhhh
Confidence 77788876632 348999999999999999999999999999887 4444443
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=6.9e-30 Score=287.47 Aligned_cols=234 Identities=18% Similarity=0.324 Sum_probs=208.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~ 494 (954)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457788998887 89999999999999999999987665 68899999999999 666 7999999999999999
Q ss_pred CCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCce---eEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+++.... .....+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999999999999999999853 58999999999999999987655 456677789999999 7889999886
Q ss_pred CCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
++ .|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+++++.+..+..| ...|.+++|
T Consensus 275 dg----~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~- 344 (435)
T 1p22_A 275 DR----TIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF- 344 (435)
T ss_dssp TS----EEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC-
T ss_pred CC----eEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe-
Confidence 44 599999999999999998877 88888884 689999999999999999999999998865 568999998
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998654
No 106
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=9.8e-30 Score=279.64 Aligned_cols=249 Identities=16% Similarity=0.152 Sum_probs=202.6
Q ss_pred cCCCCCCeEEEEEccC---CCEEEEEEcCCEEEEEEeeC-CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 414 SSDYTASVNRVMWSPD---GTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd---g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 6789999999999999 69999999999999999997 44331 25788999999999999999 79999999999
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
++||+.+++.+. +..|...|.+++|.+.+++.++++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999666666899999999999999999888777776554 556666654 467777
Q ss_pred EeCCCCceEEEEEeCCCCeEEE-EEecCCCCCeEEEEEeCCCCE----EEEEECCCeEEEEECCCC---ceeEEEecCCC
Q 002196 570 GTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNR----FLAAGDEFMIKFWDMDNV---NLLASIDADGG 641 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 641 (954)
+.++ .+.+||+....... ...........++.+.++... +++++.||.|++||+... ..+..+..+..
T Consensus 187 ~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 187 TAER----GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EGGG----CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eCCC----cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 6544 39999998765433 333333335667777666554 999999999999999987 55666665522
Q ss_pred C----------CCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 642 L----------QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 642 ~----------~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 1 16999999999999999999999999999877
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-30 Score=283.66 Aligned_cols=253 Identities=15% Similarity=0.259 Sum_probs=216.5
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~i 491 (954)
+.+|...|++++|+|++++||+|+.||.|+||++..+.. .....+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 678999999999999999999999999999999984332 223367899999999999987 77 7999999999999
Q ss_pred EECCCCc--eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC--ceeEeeCCCCceEEEEECC------
Q 002196 492 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA------ 561 (954)
Q Consensus 492 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 561 (954)
||+.+++ .+..+..|...|.+++|+++.++.++++++.|+.|++||++... ....+..+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999987434799999999999999998874 3445667788999999999
Q ss_pred -------CCCEEEEEEeCCCCceEEEEEeCCCCe----EEEEEecCCCCCeEEEEEeCC---CCEEEEEECCCeEEEEEC
Q 002196 562 -------DGARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 562 -------~g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~ 627 (954)
++.++++++.++. |++||++++. ....+.+|.. .|.+++|+|+ +.+|++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNL----VKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEETTSC----EEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeCCCe----EEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999987554 9999998753 4566777766 8999999999 899999999999999999
Q ss_pred CCCc---eeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 628 DNVN---LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 628 ~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8875 2333333345678999999999999999999999999999865
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.1e-30 Score=277.92 Aligned_cols=261 Identities=10% Similarity=0.134 Sum_probs=216.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCC
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGT 431 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 431 (954)
+|.+.|++++|+|+++ +|++|+.||.|++||+.++..... ....+.+|...|.+++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCC
Confidence 5999999999999999 789999999999999987643221 1112567999999999999 699
Q ss_pred EEEEEEcCCEEEEEEeeCCcc------eeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 432 LFGVAYSKHIVHLYTYHGGDE------LRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
+|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 999999999999999988632 1233467789999999999999 87 7999999999999999988754433
Q ss_pred c-------------cCCCCeEEEeeeccC-CccEEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCC----
Q 002196 504 E-------------GHESPVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG---- 563 (954)
Q Consensus 504 ~-------------~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g---- 563 (954)
. .|...+.+++|+|.. ++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 2 678889999999861 237999999999998888776654 44556677799999999998
Q ss_pred CEEEEEEeCCCCceEEEEEeCCCC----------------------------------------------eEEEEEecCC
Q 002196 564 ARLFSCGTNKEGESYLVEWNESEG----------------------------------------------AVKRTYHGLG 597 (954)
Q Consensus 564 ~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~~~~~ 597 (954)
++|++++.|+. |++||++++ +.+..+.+|.
T Consensus 231 ~~l~s~~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCKDGR----IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEETTSC----EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcCCCe----EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 78999887554 999999865 5667777777
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 002196 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 598 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
. .|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 6 89999999999999999999999999999887666554
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=280.51 Aligned_cols=259 Identities=14% Similarity=0.188 Sum_probs=212.1
Q ss_pred EEec-CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 351 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 351 ~~~~-h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
.++. |.+.|++++|+|+++ +|++|+.||.|+|||+..+..... ..+.+|...|++++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECCG
T ss_pred EEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeCCC
Confidence 3444 999999999999999 789999999999999984332211 125789999999999987
Q ss_pred --CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEEEECCCCc--eEEEe
Q 002196 430 --GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTGT--KQYIF 503 (954)
Q Consensus 430 --g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~ 503 (954)
+++|++|+.||.|++||+.+++.. ....+..|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence 999999999999999999998622 22367789999999999999 77 79999999999999998873 45567
Q ss_pred ccCCCCeEEEeeeccC-----------CccEEEEEecCCeEEEEeCCCCCce----eEeeCCCCceEEEEECCC---CCE
Q 002196 504 EGHESPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSAD---GAR 565 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~---g~~ 565 (954)
.+|...|.+++|++.. ++.++++++.||.|++||+++.... ..+..|...|.+++|+|+ +++
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 7899999999999842 3479999999999999999876543 345667789999999999 899
Q ss_pred EEEEEeCCCCceEEEEEeCCCCe---EEEEEe--cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEE
Q 002196 566 LFSCGTNKEGESYLVEWNESEGA---VKRTYH--GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 635 (954)
|++++.++. |++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++..+.....
T Consensus 224 l~s~~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 293 (379)
T 3jrp_A 224 LASVSQDRT----CIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 293 (379)
T ss_dssp EEEEETTSC----EEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEE
T ss_pred EEEEeCCCE----EEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccc
Confidence 999987554 9999998863 222222 2443 899999999999999999999999999986544433
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5e-30 Score=285.55 Aligned_cols=249 Identities=15% Similarity=0.169 Sum_probs=208.3
Q ss_pred CCeEEEEEccCCCEEE-EEEcCCEEEEEEeeCCcce-eeeeeeecccCCEEEEEEec-CCCceEEEEEcCCCeEEEEECC
Q 002196 419 ASVNRVMWSPDGTLFG-VAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~-s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|++++|+| +++ +|++|+.||.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455688999876554 5788999999999654322 23335788999999999999 777 79999999999999999
Q ss_pred CC-------ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe--eCCCCceEEEEECCCCCEE
Q 002196 496 TG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY--DAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 496 ~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l 566 (954)
++ +.+..+.+|...|.+++|++++. .++++++.||.|++||+++.+....+ ..+...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 67889999999999999998753 59999999999999999998877777 6788899999999999999
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEE-ecCCCCCeEEEEEeCCCCEEEEE---ECCCeEEEEECCCCce-eEEEecCCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGVVQFDTTKNRFLAA---GDEFMIKFWDMDNVNL-LASIDADGG 641 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 641 (954)
++++.++ .|++||+++++.+..+ ..|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCRDK----RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEETTS----EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEecCC----cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 9998644 5999999999999998 67766458999999999999998 7899999999998765 333332 33
Q ss_pred CCCcceEEECCCCCEEEE-EeCCCcEEEEEccCCC
Q 002196 642 LQASPCIRFNKEGILLAV-STNDNGIKILANADGI 675 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s-~~~dg~i~iwd~~~~~ 675 (954)
...+.+++|+|++++|++ ++.||.|++||+.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 457999999999999875 4579999999998773
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-29 Score=280.44 Aligned_cols=303 Identities=12% Similarity=0.058 Sum_probs=232.4
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCC--------------------C----------
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC--------------------S---------- 406 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------~---------- 406 (954)
.++.+++|+|+|+ +|+++ .++.|++||+.+|+... .+..|..... .
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWE--FAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEE--EEEEEECCC--------------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcce--eeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 4789999999999 55555 57899999999998221 1122321110 0
Q ss_pred ----------ccccccccCCCCCCeEEEEEccCCCEE-EEEEcCCEEEEEEee--CCcceeeeeeeecccCCEEEEEEec
Q 002196 407 ----------MPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSY 473 (954)
Q Consensus 407 ----------~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~ 473 (954)
.........+|.+.|.+++|+|++++| ++|+.||.|+|||+. +++.+.... ...|...|.+++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAE 159 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcC
Confidence 000001123567789999999999996 888899999999999 777665221 235778999999999
Q ss_pred CCCceEEEEEcCCCeEEEEECCCCceEE----EeccCCCCeEEEeeecc-CCccEEEEEecCCeEEEEeCCCCCceeE-e
Q 002196 474 PNKQLSVVTCGEDRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGSRVD-Y 547 (954)
Q Consensus 474 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~ 547 (954)
+++ +|++|+.||.|++|++.++.... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+++...... .
T Consensus 160 ~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 160 DDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp TSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred CCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 999 79999999999999998877554 77889999999999987 2237999999999999999998877766 4
Q ss_pred eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC------------------------CCCCeEE
Q 002196 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------------------GKRSVGV 603 (954)
Q Consensus 548 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------------------~~~~i~~ 603 (954)
..|...|.+++|+ ++++|++++.++ .|++||+.+++.+..+..+ ....+..
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDD----KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSS----EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCC----eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 5678899999999 999999998644 5999999999988887632 1236889
Q ss_pred EEEeCCCCEEEEEE-CCCeEEEEEC--CCC---ceeEEEecCCCCCCcceEEECCCCCEEEEEeC------CCcEEEEEc
Q 002196 604 VQFDTTKNRFLAAG-DEFMIKFWDM--DNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTN------DNGIKILAN 671 (954)
Q Consensus 604 ~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~------dg~i~iwd~ 671 (954)
++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+|.+
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 99999999999999 8999999999 555 566666654 57999999996544443332 455888877
Q ss_pred cCC
Q 002196 672 ADG 674 (954)
Q Consensus 672 ~~~ 674 (954)
...
T Consensus 390 ~~~ 392 (450)
T 2vdu_B 390 NLN 392 (450)
T ss_dssp ETT
T ss_pred EcC
Confidence 543
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=7.9e-28 Score=266.93 Aligned_cols=280 Identities=13% Similarity=0.099 Sum_probs=228.4
Q ss_pred eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE-EEEEcCCEEEEEEee
Q 002196 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYH 448 (954)
Q Consensus 370 ~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~~~dg~i~iwd~~ 448 (954)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999877653 3334 458999999999987 566689999999999
Q ss_pred CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEE-EEE
Q 002196 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FST 527 (954)
Q Consensus 449 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~ 527 (954)
+++... .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++++ +.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 987665 444443 8999999999995 3567778899999999999998888754 468899998766 555 788
Q ss_pred ecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEe
Q 002196 528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD 607 (954)
Q Consensus 528 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 607 (954)
+.++.|++||+.+.+....+.. ...+.+++|+|+++.+++++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 8899999999998776666654 346799999999998865542 24569999999998888776543 68899999
Q ss_pred CCCCEEEEEE---CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE-EEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 608 TTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 608 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999988 68999999999999988887642 47899999999877 66688999999999998 77777766
Q ss_pred cccc
Q 002196 684 RTFD 687 (954)
Q Consensus 684 ~~~~ 687 (954)
+...
T Consensus 285 ~~~~ 288 (391)
T 1l0q_A 285 GKNP 288 (391)
T ss_dssp SSSE
T ss_pred CcCC
Confidence 5443
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.8e-27 Score=268.07 Aligned_cols=375 Identities=12% Similarity=0.057 Sum_probs=264.9
Q ss_pred eeeeeeCCCCCcceeecCCCCCcceEEEecCCCCeeEEE---EcCCCCeEEEEEE-------------cCC--eEEEEeC
Q 002196 325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMD---FHPVQQILLVVGT-------------NMG--DVMLWEV 386 (954)
Q Consensus 325 i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~---~sp~g~~ll~~g~-------------~dg--~i~iwd~ 386 (954)
|..+.+.|....+........+...+. ......+..++ |+|++..+++... .++ .|.+||.
T Consensus 30 ~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 108 (433)
T 3bws_A 30 IVKFSIHPYKGTVIRLGEEILPFKVLE-MDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDK 108 (433)
T ss_dssp EEEEEEECCTTCEEEETTEECCEEEEE-EETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCB
T ss_pred EEEEecccccCceEEcCceecceeeee-cccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECC
Confidence 335667775444443333222222221 23556788888 9998875544322 222 3333444
Q ss_pred CCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeee--eeecccC
Q 002196 387 GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL--EIEAHVG 464 (954)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~h~~ 464 (954)
.++....... +. ....+.+++|+|++.++++++.++.|++||+.+++...... .+.+|.+
T Consensus 109 ~~~~~~~~~~-----------------~~-~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 109 EGITHRFISR-----------------FK-TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG 170 (433)
T ss_dssp TTCSEEEEEE-----------------EE-CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred CCCcceEEEE-----------------Ec-CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC
Confidence 3342211111 12 23456799999987888888888999999999887654221 2457888
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEE-EEEecCCeEEEEeCCCCCc
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS 543 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~ 543 (954)
.|.+++|++++. ++++++.|+.|++||+.+++.+..+..|...+.+++|++++ ..+ ++++.|+.|++||+++.+.
T Consensus 171 ~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 171 FVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEE
T ss_pred ceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcE
Confidence 999999999888 79999999999999999999999999999999999999866 455 5566899999999988766
Q ss_pred eeEeeCCCCceEEEEECCCCCEEEEEEeCCC----CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEE-EEEEC
Q 002196 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGD 618 (954)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~ 618 (954)
...+.. ...+.+++|+|+|+.+++++.+.. .++.|++||+.+++.+..+.. .. .+..++|+|+++.+ ++++.
T Consensus 247 ~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 247 IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PG-NKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EE-CEEEEEECSSTTEEEEEETT
T ss_pred EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-CC-CcceEEECCCCCEEEEEecC
Confidence 555544 446899999999999998875332 256799999999988776633 22 67889999999765 55579
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhcccc
Q 002196 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 698 (954)
++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.+..-
T Consensus 324 ~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~-------------------------------- 368 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNH-------------------------------- 368 (433)
T ss_dssp TTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCC--------------------------------
T ss_pred CCEEEEEECCCCcEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCc--------------------------------
Confidence 99999999999998888763 3468899999999998888763210
Q ss_pred CCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccc
Q 002196 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (954)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (954)
.....+++++.||.|++||+.+.. ....+. ....
T Consensus 369 --------------------------------------~~~~~~~~g~~dg~v~~~d~~~~~---~~~~~~-----~~~~ 402 (433)
T 3bws_A 369 --------------------------------------PTEGYLKKGLVLGKVYVIDTTTDT---VKEFWE-----AGNQ 402 (433)
T ss_dssp --------------------------------------TTTCTTSCCSSCCEEEEEETTTTE---EEEEEE-----CSSS
T ss_pred --------------------------------------cccccccccccceEEEEEECCCCc---EEEEec-----CCCC
Confidence 001234455666666666664311 111111 2346
Q ss_pred eEEEEEecCCceEEEeec-CCeEEEeecc
Q 002196 779 VSRLIYTNSGLAILALAS-NAVHKLWKWP 806 (954)
Q Consensus 779 v~~~~~spdg~~l~~~~~-dg~v~lw~~~ 806 (954)
+.+++|+|||++|++++. |+.+++|++.
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 889999999999988875 9999999875
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5e-28 Score=248.64 Aligned_cols=290 Identities=15% Similarity=0.139 Sum_probs=206.7
Q ss_pred EEEEEEec-CCCceEEEEEcCCCeEEEEECCCC---ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC
Q 002196 466 VNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 466 v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
+.++.|-. ..+.+.+++++. ..|++|+..++ ++++++..|..+|..+.+.|+.-+ ++..+-.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~------------ 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN-LVCVALG------------ 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS-CEEEEEC------------
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc-eeeeeec------------
Confidence 55666643 445555667765 69999999998 899999999999999999987642 2222111
Q ss_pred CceeEeeCCCCceEEEEECCC----CCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE
Q 002196 542 GSRVDYDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 542 ~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
..+...|..++++|| ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 123347889999999 889998763 26667543 333333322
Q ss_pred --CCCeEEEEEC-CCCceeEEEecCCCCCCcceEEECC---CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceec
Q 002196 618 --DEFMIKFWDM-DNVNLLASIDADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (954)
Q Consensus 618 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 691 (954)
.|+.|++|++ .+++.+..+..+ ...++.++|++ ++..|++++.|++|+|||+.++ ++++.+.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 4778888887 347777777766 55788899999 7799999999999999999999 66666654321
Q ss_pred chhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecC
Q 002196 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP 771 (954)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~ 771 (954)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEe
Q 002196 772 DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (954)
Q Consensus 772 ~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 851 (954)
+...+.+++|+|||.++++++.+..
T Consensus 225 ---~v~~v~~vafSpdG~~lvs~s~~~~---------------------------------------------------- 249 (356)
T 2w18_A 225 ---YQASVCHKAYSEMGLLFIVLSHPCA---------------------------------------------------- 249 (356)
T ss_dssp -----CCCEEEEEEETTEEEEEEC--------------------------------------------------------
T ss_pred ---ceeeeEEEEECCCCCEEEEeccCCC----------------------------------------------------
Confidence 1235678899999998877764310
Q ss_pred ccCCCeEEEec-CCeEEEEEcccccEEEee-----CCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecC
Q 002196 852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTF-----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925 (954)
Q Consensus 852 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~ 925 (954)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+|+++.++.+
T Consensus 250 ---~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 250 ---KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ---cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 12467888 999999999999988765 467666544444 467999999999999999999999999999
Q ss_pred Ccccee-EEEEecCCCeEEEecCCcceec
Q 002196 926 HQKRIT-GLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 926 h~~~V~-~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|...+. +++|||||++|+||+.|++|||
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEE
Confidence 988765 5899999999999999999997
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.8e-28 Score=263.00 Aligned_cols=240 Identities=11% Similarity=0.156 Sum_probs=188.0
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
...|...|.+++|+|||++|++|+.++ ++||++++++... . .+...+..+++.++++. ++++++.|+.|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998775 7899998765433 1 22235888899998884 346788899999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC-CceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
+.+++++..+. +...|.+++++++ .++.+ .|+.|++||+.+. +....+.. ....+++++ .++++++..
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 99999999887 6778999998753 34443 4789999999987 44443333 445566777 666665222
Q ss_pred CCCceEEEEEeCCCCe----------------EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCe-EEEEECCCCceeEE
Q 002196 573 KEGESYLVEWNESEGA----------------VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLAS 635 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 635 (954)
. ++.|++||+.++. .+..+.+|.. .|.+++|+|++++|++++.||+ |++||+.+++.+..
T Consensus 157 ~--~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 157 N--LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp C--TTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred c--CcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 2 3459999999865 2677888877 9999999999999999999998 99999999999999
Q ss_pred EecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+....|...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 973223678999999999999999999999999999765
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.3e-27 Score=261.96 Aligned_cols=333 Identities=11% Similarity=0.087 Sum_probs=254.7
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEE-EEEecCCeEEEEeCCCCCceeEeeCCCCceEEE
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 557 (954)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 689999999999999999999999887654 8999998766 555 777799999999999877766666544 89999
Q ss_pred EECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEE-EEEECCCeEEEEECCCCceeEEE
Q 002196 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASI 636 (954)
Q Consensus 558 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 636 (954)
+|+|+++++++++.+ +..|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~~---~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMA---SSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEECC---CCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999999998776532 3469999999999988887654 68999999999987 57778999999999999998888
Q ss_pred ecCCCCCCcceEEECCCCCEE-EEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccc
Q 002196 637 DADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (954)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (954)
..+ ..+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 155 ~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 754 356899999999887 57778899999999876 3322221
Q ss_pred ccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEee
Q 002196 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 795 (954)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 795 (954)
+...+.+++|+|+|+++++++
T Consensus 198 -----------------------------------------------------------~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 198 -----------------------------------------------------------VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp -----------------------------------------------------------CSSEEEEEEECTTSSEEEEEE
T ss_pred -----------------------------------------------------------cCCCccceEECCCCCEEEEEe
Confidence 224567899999999999888
Q ss_pred ---cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeE-EEec-CCeEEEEE
Q 002196 796 ---SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV-MSAS-GGKISLFN 870 (954)
Q Consensus 796 ---~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-a~~s-dg~i~iwd 870 (954)
.++.+++||+.. ++.+.. +. ....+.+++|+|||++| ++++ |+.|++||
T Consensus 219 ~~~~~~~v~~~d~~~----------------------~~~~~~-~~---~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGT----------------------NKITAR-IP---VGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp ECSSCCEEEEEETTT----------------------TEEEEE-EE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCcCCCcEEEEECCC----------------------CeEEEE-Ee---cCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 589999997643 222221 22 22357899999999988 5556 89999999
Q ss_pred cccccEEEeeCCCCCCee---EEE------------ecCCCC----------ceEEEEecCccEEEEeccccceEEEecC
Q 002196 871 MMTFKTMTTFMPPPPAAT---FLA------------FHPQDN----------NIIAIGMEDSSIQIYNVRVDEVKTKLKG 925 (954)
Q Consensus 871 ~~~~~~~~~~~~h~~~v~---~l~------------~sp~d~----------~~lasgs~dg~i~iwd~~~~~~~~~~~~ 925 (954)
+.+++.+..+..|..+.. .+. |+. +. ..+...+.|..+++||+.+|... .
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~-~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~ 347 (391)
T 1l0q_A 273 TATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKS-NITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----K 347 (391)
T ss_dssp TTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEE-SCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----C
T ss_pred CCCCcEEEEEECCcCCCccceeeeccccccccccccccc-ccccccccccceEEEEeCCCCceEEEEECCCCccc----C
Confidence 999999988877654421 122 332 11 34666677889999999888642 2
Q ss_pred CccceeEEEEecCCCeEEEec---CCc
Q 002196 926 HQKRITGLAFSNTLNVLVSSG---ADS 949 (954)
Q Consensus 926 h~~~V~~l~~s~dg~~l~s~s---~Dg 949 (954)
+..+ ...|+++|.|.++.. .||
T Consensus 348 ~~~~--~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 348 KQNP--THTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp SSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred cCCC--eEEeCCCceEEEEEEEECCCC
Confidence 2222 367999998876543 555
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.3e-28 Score=272.89 Aligned_cols=252 Identities=17% Similarity=0.274 Sum_probs=210.6
Q ss_pred cCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCC-------cceeeeeeeecccCCEEEEEEecCCCceEEEEEcC
Q 002196 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGG-------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (954)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~ 485 (954)
...|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|++++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 4679999999999997 789999999999999999861 112233368899999999999999886 5999999
Q ss_pred CCeEEEEECCCCce-------EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC---CceeEeeCCCCceE
Q 002196 486 DRVIKVWDAVTGTK-------QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSST 555 (954)
Q Consensus 486 dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~ 555 (954)
||.|++||+.++.. ...+.+|...|.+++|++... .++++++.||.|++||+++. .....+..+...++
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 467778999999999998443 79999999999999999976 45556677888999
Q ss_pred EEEECCCCC-EEEEEEeCCCCceEEEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCC--
Q 002196 556 MMAYSADGA-RLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV-- 630 (954)
Q Consensus 556 ~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-- 630 (954)
+++|+|++. .+++++.+ +.|++||+++ +..+..+..|.. .|.+++|+|++. ++++++.||.|++||+...
T Consensus 282 ~i~~~p~~~~~l~tg~~d----g~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSAD----KTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEETT----SEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeCC----CeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 999999998 56677653 4599999998 567788888776 899999999985 6899999999999999872
Q ss_pred ------------ceeEEEecCCCCCCcceEEECCCCC-EEEEEeCCCcEEEEEccCC
Q 002196 631 ------------NLLASIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANADG 674 (954)
Q Consensus 631 ------------~~~~~~~~~~~~~~v~~v~~s~~~~-~l~s~~~dg~i~iwd~~~~ 674 (954)
+.+..+.. +...|.+++|+|+++ +|++++.||.|++|++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 44444443 466899999999998 9999999999999998754
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.3e-28 Score=276.13 Aligned_cols=266 Identities=13% Similarity=0.246 Sum_probs=215.2
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
....+.|.+.|++++|+|++..++++|+.+|.|++||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4566779999999999998666999999999999999976211000 0000001112568999999999999
Q ss_pred CCC-EEEEEEcCCEEEEEEeeCCcc----eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC---ceE
Q 002196 429 DGT-LFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQ 500 (954)
Q Consensus 429 dg~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~---~~~ 500 (954)
++. +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 1223356789999999999995554 7999999999999999987 577
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC-CceeEeeCCCCceEEEEECCCCC-EEEEEEeCCCCceE
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESY 578 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~ 578 (954)
..+..|...|++++|++.+. .++++|+.||.|++||+++. .....+..|...|.+++|+|+++ ++++++.++ .
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~----~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR----R 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS----C
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC----c
Confidence 88889999999999998663 47999999999999999984 45667777888999999999996 577776544 4
Q ss_pred EEEEeCCC--------------CeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCC
Q 002196 579 LVEWNESE--------------GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 579 i~iwd~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 630 (954)
|++||+.. ...+..+.+|.. .|..++|+|++. ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356677777766 899999999998 8999999999999998753
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-28 Score=275.24 Aligned_cols=276 Identities=12% Similarity=0.100 Sum_probs=220.3
Q ss_pred CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe---EEEEEecCCC------------------------------
Q 002196 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA---VKRTYHGLGK------------------------------ 598 (954)
Q Consensus 552 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~------------------------------ 598 (954)
+++.+++|+++|++|+++. +..|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4788999999999777664 2349999999998 6655543211
Q ss_pred -----------------------CCeEEEEEeCCCCEE-EEEECCCeEEEEECC--CCceeEEEecCCCCCCcceEEECC
Q 002196 599 -----------------------RSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD--NVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 599 -----------------------~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 888899999999999 888888887555566899999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCC
Q 002196 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (954)
Q Consensus 653 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (954)
++++|++++.+|.|++|++.++.. ...
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~---------------------------------------------------- 186 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKF---------------------------------------------------- 186 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSC----------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccc----------------------------------------------------
Confidence 999999999999999999876521 000
Q ss_pred CCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecC---CceEEEeecCCeEEEeeccCCC
Q 002196 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS---GLAILALASNAVHKLWKWPRNE 809 (954)
Q Consensus 733 ~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd---g~~l~~~~~dg~v~lw~~~~~~ 809 (954)
.+ ....+|...|.+++|+|+ +++|++++.|+.|++||+..
T Consensus 187 -----------------~~------------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-- 229 (450)
T 2vdu_B 187 -----------------TQ------------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-- 229 (450)
T ss_dssp -----------------CC------------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--
T ss_pred -----------------cc------------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--
Confidence 00 000126788999999999 99999999999999998653
Q ss_pred CCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCC-----
Q 002196 810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPP----- 883 (954)
Q Consensus 810 ~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h----- 883 (954)
+..+...+.+ |...|.+++|+ ++++|++++ |++|++||+.+++++..+..+
T Consensus 230 --------------------~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 230 --------------------CFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp --------------------TTCEEEECCC--CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred --------------------CceeeeeecC--CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence 2222222334 88999999999 999999999 999999999999998887632
Q ss_pred --------------------CCCeeEEEecCCCCceEEEEe-cCccEEEEec--ccc---ceEEEecCCccceeEEEEec
Q 002196 884 --------------------PPAATFLAFHPQDNNIIAIGM-EDSSIQIYNV--RVD---EVKTKLKGHQKRITGLAFSN 937 (954)
Q Consensus 884 --------------------~~~v~~l~~sp~d~~~lasgs-~dg~i~iwd~--~~~---~~~~~~~~h~~~V~~l~~s~ 937 (954)
...|.+++|+| ++++|++++ .|+.|+||++ .++ +.+..+.+| ..|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred hhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 35689999999 999999998 8999999999 666 777888888 8899999999
Q ss_pred CCCeEEEecC
Q 002196 938 TLNVLVSSGA 947 (954)
Q Consensus 938 dg~~l~s~s~ 947 (954)
++.++++++.
T Consensus 365 ~~~~v~~~~~ 374 (450)
T 2vdu_B 365 DEFQVTLDNK 374 (450)
T ss_dssp TEEEEEECCT
T ss_pred CcEEEEEecc
Confidence 6544444443
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.7e-27 Score=268.16 Aligned_cols=295 Identities=9% Similarity=0.052 Sum_probs=241.3
Q ss_pred ceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
..+..+.....+.+++|+|++ .++++++.++.|++||+.+++...... ...+.+|...|.+++|+
T Consensus 114 ~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 114 RFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISIP 178 (433)
T ss_dssp EEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEEG
T ss_pred eEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEEc
Confidence 556666666778899999955 488888889999999999988764211 11245789999999999
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
|+++++++++.|+.|++||+++++... .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 253 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI- 253 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-
T ss_pred CCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-
Confidence 999999999999999999999887665 56788999999999999995 3467778999999999999988888754
Q ss_pred CCeEEEeeeccCCccEEEEEe--------cCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEE
Q 002196 508 SPVYSICPHHKENIQFIFSTA--------TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 579 (954)
..+.+++|++++ .++++++ .|+.|++||+.+.+..... .+...+..++|+|+++.+++++. .++.+
T Consensus 254 ~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~v 327 (433)
T 3bws_A 254 GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSKI 327 (433)
T ss_dssp SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTEE
T ss_pred CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCEE
Confidence 458899998765 6788877 4889999999876554443 23347889999999987766542 24569
Q ss_pred EEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC---------------CCeEEEEECCCCceeEEEecCCCCCC
Q 002196 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD---------------EFMIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
.+||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++.+..+..+ ..
T Consensus 328 ~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---~~ 402 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---NQ 402 (433)
T ss_dssp EEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---SS
T ss_pred EEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---CC
Confidence 9999999998888763 33 7899999999999998875 579999999999998888753 36
Q ss_pred cceEEECCCCCEEEEEeC-CCcEEEEEccC
Q 002196 645 SPCIRFNKEGILLAVSTN-DNGIKILANAD 673 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~-dg~i~iwd~~~ 673 (954)
+.+++|+|+|++|++++. |+.|++|++..
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 899999999999988875 99999999863
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.9e-28 Score=266.82 Aligned_cols=277 Identities=14% Similarity=0.141 Sum_probs=214.2
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.|.+.|++++|+|||+ +|++|+.+| ++|||+.+++.... .+...+..++++++++.+
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 3889999999999999 778887765 78999988765532 122358889999999888
Q ss_pred E-EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC-ceEEEeccCCCCeE
Q 002196 434 G-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVY 511 (954)
Q Consensus 434 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~ 511 (954)
+ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence 4 56778999999999988765 444 67799999998764 3333 4789999999988 66666554 334
Q ss_pred EEeeeccCCccEEEE--EecCCeEEEEeCCCCC----------------ceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 512 SICPHHKENIQFIFS--TATDGKIKAWLYDNLG----------------SRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
.+++++ .+++. |+.||.|++||+++.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 445554 34555 6889999999998755 15667788889999999999999999986
Q ss_pred CCceE-EEEEeCCCCeEEEEEe-c-CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee--EE-------------
Q 002196 574 EGESY-LVEWNESEGAVKRTYH-G-LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--AS------------- 635 (954)
Q Consensus 574 ~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~------------- 635 (954)
++. |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+... ..
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 445 9999999999999998 5 554 9999999999999999999999999999765321 11
Q ss_pred -----EecC-CCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 636 -----IDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 636 -----~~~~-~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+... ........++|+++++.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123467999999999999999999999998654
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=266.79 Aligned_cols=274 Identities=10% Similarity=0.072 Sum_probs=202.9
Q ss_pred EecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 002196 471 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (954)
Q Consensus 471 ~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 550 (954)
+.+++. ++++|+.||.|++||+.+++.+..+. ...|.++.++|. +++++.|++|++|+.+.
T Consensus 44 ~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------- 104 (343)
T 3lrv_A 44 MYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------- 104 (343)
T ss_dssp SSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT----------
T ss_pred hcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC----------
Confidence 345566 79999999999999999999888876 466777777764 99999999999998753
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC--CCCEEEEEECCCeEEEEECC
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT--TKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~ 628 (954)
.+.+||..+++.+..+...+...|.+++|+| +++++++++.||.|++||++
T Consensus 105 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~ 157 (343)
T 3lrv_A 105 ---------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE 157 (343)
T ss_dssp ---------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred ---------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence 1678999988877777644444899999999 99999999999999999999
Q ss_pred CCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCC
Q 002196 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (954)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 708 (954)
+++.+.....+ +...+.+++|+|++.+|++|+.||.|++||+.++......+.
T Consensus 158 ~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------------- 210 (343)
T 3lrv_A 158 DDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------------- 210 (343)
T ss_dssp SSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC--------------------------
T ss_pred CCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe--------------------------
Confidence 99887666433 234699999999999999999999999999877621101000
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCC
Q 002196 709 NANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG 788 (954)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 788 (954)
.
T Consensus 211 -----------------------------------------------------------------~-------------- 211 (343)
T 3lrv_A 211 -----------------------------------------------------------------V-------------- 211 (343)
T ss_dssp -----------------------------------------------------------------C--------------
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred ceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEE
Q 002196 789 LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISL 868 (954)
Q Consensus 789 ~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~i 868 (954)
+|...|++++|+|+|.+|++++++.|++
T Consensus 212 ----------------------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~i 239 (343)
T 3lrv_A 212 ----------------------------------------------------DEEAKIKEVKFADNGYWMVVECDQTVVC 239 (343)
T ss_dssp ----------------------------------------------------CTTSCEEEEEECTTSSEEEEEESSBEEE
T ss_pred ----------------------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEEE
Confidence 0445555666666666666666556666
Q ss_pred EEcccccEEEeeCC---CCCCe--eEEEecCCCCceEEEEec-CccEEEEeccccceEEEecCCccceeEEEEec---CC
Q 002196 869 FNMMTFKTMTTFMP---PPPAA--TFLAFHPQDNNIIAIGME-DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN---TL 939 (954)
Q Consensus 869 wd~~~~~~~~~~~~---h~~~v--~~l~~sp~d~~~lasgs~-dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~---dg 939 (954)
||+.+++....+.. |...+ .+++|+| +|++|++++. |+.|+||++.++...... .++..++|++ ++
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 314 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADF 314 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCC
T ss_pred EEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccccc
Confidence 66665555444332 33333 4799999 9999999998 999999999765433222 5577788888 78
Q ss_pred CeEEEecCCcceec
Q 002196 940 NVLVSSGADSQVRN 953 (954)
Q Consensus 940 ~~l~s~s~Dg~I~i 953 (954)
+.|++++.||.+++
T Consensus 315 ~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 315 TDMDVVCGDGGIAA 328 (343)
T ss_dssp CEEEEEEETTEEEE
T ss_pred ceeEEEecCCceEE
Confidence 88888888887764
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=295.37 Aligned_cols=253 Identities=15% Similarity=0.253 Sum_probs=214.6
Q ss_pred cCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKV 491 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~i 491 (954)
+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.+.|++++|+|+ ++ ++++|+.||.|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 678999999999999999999999999999999985432 233368899999999999988 77 7999999999999
Q ss_pred EECCCCc--eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC--ceeEeeCCCCceEEEEECC------
Q 002196 492 WDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSA------ 561 (954)
Q Consensus 492 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 561 (954)
||+.+++ .+..+.+|...|.+++|+|+.++.++++|+.||.|++||+++.. .......+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999988434899999999999999998763 3445667788999999999
Q ss_pred -------CCCEEEEEEeCCCCceEEEEEeCCCC----eEEEEEecCCCCCeEEEEEeCC---CCEEEEEECCCeEEEEEC
Q 002196 562 -------DGARLFSCGTNKEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTT---KNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 562 -------~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~ 627 (954)
++..+++++.++. |++||++++ .....+.+|.. .|.+++|+|+ +.++++++.||.|++||+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~----I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNL----VKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp -----CGGGCCEEEEETTSC----EEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCe----EEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 5899999987554 999999877 56677777776 8999999999 899999999999999999
Q ss_pred CCCcee---EEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 628 DNVNLL---ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 628 ~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 886422 11222345678999999999999999999999999999865
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.1e-28 Score=270.64 Aligned_cols=307 Identities=11% Similarity=0.082 Sum_probs=202.8
Q ss_pred ecCCCCeeEEEE---cCCCCeEEEEEEcCCeEEEEeCCCCce-----eeeeeeEEEeccCCCc-----cccccccCCCCC
Q 002196 353 LNQGSAVKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRER-----IAVKSFKVWELGACSM-----PLQASLSSDYTA 419 (954)
Q Consensus 353 ~~h~~~V~~~~~---sp~g~~ll~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~ 419 (954)
+.-.....++.| +|++..++++| .++.|.+|+...... .....+..|....... .........|..
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDG 90 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCC
Confidence 333445667777 45566577666 477899998643221 1111222222211110 001112234555
Q ss_pred CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCccee--eeeeeecccCCEEEEEEec--------CCCceEEEEEcCCCeE
Q 002196 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSY--------PNKQLSVVTCGEDRVI 489 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~--------~~~~~~l~s~~~dg~i 489 (954)
.+....+++++.+||+|+.|++|+|||+++++... ....+.+|.+.|++++|+| |++ +|++|+.|++|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv 168 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTL 168 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeE
Confidence 66666677788899999999999999999886543 2235789999999999998 677 79999999999
Q ss_pred EEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe----------------------
Q 002196 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---------------------- 547 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------------------- 547 (954)
+|||+.++.++..+.+|...|.+++|+|++. .+|++++.|++|++||+++.......
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999999998888889999999999998653 58999999999999999876543221
Q ss_pred ---eCCCCceEEEEEC-CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEE------------------EE
Q 002196 548 ---DAPGHSSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV------------------VQ 605 (954)
Q Consensus 548 ---~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~------------------~~ 605 (954)
..+...+.++.|+ ++++.+++++.++ .+++||+.++.....+..+.. .+.. ..
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~----~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSG----AWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTS----EEEEEEC--------------------CCSCSEEEECSSCCSSCCE
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCC----CEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEE
Confidence 2344567888886 8999999987644 599999988776655544332 2222 22
Q ss_pred EeC--CCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 606 FDT--TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 606 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
++| ++.++++|+.||.|++||+.+++.......+ ...|.+++|+|||++||+++++| +.+|.+
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 333 2335666778999999999999888877765 45899999999999999998776 555554
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-28 Score=293.82 Aligned_cols=252 Identities=13% Similarity=0.188 Sum_probs=209.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC--CC
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--GT 431 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~ 431 (954)
+|.+.|++++|+|+|+ ++++|+.||.|+|||+.++..... ..+.+|.++|++++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecCCCCCC
Confidence 4999999999999999 789999999999999985432211 125789999999999998 99
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC--CCceEEEEEcCCCeEEEEECCCC--ceEEEeccCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIKVWDAVTG--TKQYIFEGHE 507 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~ 507 (954)
+|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ ++ ++++|+.||.|++||+.++ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 9999999999999999987622 23367889999999999999 77 7999999999999999887 3455678899
Q ss_pred CCeEEEeeeccC-----------CccEEEEEecCCeEEEEeCCCCCc----eeEeeCCCCceEEEEECCC---CCEEEEE
Q 002196 508 SPVYSICPHHKE-----------NIQFIFSTATDGKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSAD---GARLFSC 569 (954)
Q Consensus 508 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~---g~~l~~~ 569 (954)
..|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999999841 347999999999999999987643 3456677889999999999 8999999
Q ss_pred EeCCCCceEEEEEeCCCCe-----EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 570 GTNKEGESYLVEWNESEGA-----VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
+.++. |++||+.++. .......+.. .+.+++|+|+++++++++.||.|++|++..+.
T Consensus 226 s~Dg~----I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQDRT----CIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ESSSC----EEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCE----EEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 87554 9999998864 2222223444 88999999999999999999999999998643
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=9.7e-28 Score=265.26 Aligned_cols=280 Identities=9% Similarity=0.060 Sum_probs=170.2
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE-----EecCCCCCeEEEEEeC--------CCCEEEEEECC
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT-----YHGLGKRSVGVVQFDT--------TKNRFLAAGDE 619 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-----~~~~~~~~i~~~~~~~--------~~~~l~~~~~d 619 (954)
......+++++.++++++.|+. |++||.+++..... +.+|.+ .|.+++|+| ++++|++++.|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~----v~lw~~~~~~~~~~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNT----VRLIITKNETIITQHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ------CCEEEEEEEEEETTSC----EEEEEEETTEEEEEEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CcceeecCCCCCEEEEEeCCCc----EEEEECCCCccceeeeecccCCCCC-ceEEEEEccccccccCCCCCEEEEEECC
Confidence 4445566778888999887554 99999998865432 456766 999999998 78999999999
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCcceEEECCCC-CEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhcccc
Q 002196 620 FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (954)
Q Consensus 620 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 698 (954)
++|+|||+.++.++..+..+ ...+.+++|+|++ .+|++++.||.|++||+.++. .......+......
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~-~~~~~~~~~~~~~~-------- 234 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL-SAEENSQTELVKNP-------- 234 (393)
T ss_dssp SEEEEEEEETTEEEEEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCC--------
T ss_pred CeEEEEECCCCceeeeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc-ccccccccCCcccc--------
Confidence 99999999888877777655 5589999999987 489999999999999998873 22222111110000
Q ss_pred CCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccc
Q 002196 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (954)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (954)
...+......... ....+|...
T Consensus 235 ------------------------------------------~~~s~~~~~~~~~----------------~~~~~~~~~ 256 (393)
T 4gq1_A 235 ------------------------------------------WLLTLNTLPLVNT----------------CHSSGIASS 256 (393)
T ss_dssp ------------------------------------------CSEEEESGGGC----------------------CCSSS
T ss_pred ------------------------------------------eEEecccccceee----------------eeccccccc
Confidence 0000000000000 000124444
Q ss_pred eEEEEEe-cCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCe
Q 002196 779 VSRLIYT-NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (954)
Q Consensus 779 v~~~~~s-pdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 857 (954)
+.++.|+ |||+.+++++.|+++++||+.. ++++..
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~--------------------------------------------~~~~~~ 292 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFA--------------------------------------------NNDYNE 292 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC----------------------------------------------------
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECcc--------------------------------------------CCCCce
Confidence 5555554 4555555555555555554321 001111
Q ss_pred EEEecCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEec
Q 002196 858 VMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (954)
Q Consensus 858 la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 937 (954)
+... ...++.............+...+..+.+.+.++.++++|+.||+|+|||+.+++++..+.+|...|++++|||
T Consensus 293 l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp 369 (393)
T 4gq1_A 293 ISDS---TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ 369 (393)
T ss_dssp --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT
T ss_pred Eeee---cCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC
Confidence 1100 0111111111111222222333333444443566788899999999999999999998889999999999999
Q ss_pred CCCeEEEecCCcceec
Q 002196 938 TLNVLVSSGADSQVRN 953 (954)
Q Consensus 938 dg~~l~s~s~Dg~I~i 953 (954)
||++||+++.||.+.+
T Consensus 370 dG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 370 DGSHLAIATEGSVLLT 385 (393)
T ss_dssp TSSEEEEEESSEEEEE
T ss_pred CCCEEEEEeCCCeEEE
Confidence 9999999999997543
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=260.13 Aligned_cols=269 Identities=8% Similarity=0.041 Sum_probs=211.0
Q ss_pred EEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEE
Q 002196 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (954)
Q Consensus 363 ~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i 442 (954)
.+.+++. ++++|+.||+|++||+.+++.+... . ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~-------------------~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITTI-------------------T--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEEE-------------------E--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEEE-------------------e--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445665 8899999999999999999876541 1 356778888888 9999999999
Q ss_pred EEEEee---------CCcceeeeeeeecccCCEEEEEEec--CCCceEEEEEcCCCeEEEEECCCCceEEEecc-CCCCe
Q 002196 443 HLYTYH---------GGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HESPV 510 (954)
Q Consensus 443 ~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v 510 (954)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.||.|++||+++++....+.. |...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1235778999999999 898 799999999999999999998777644 55689
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCce-eEeeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
.+++|+|++ .++++|+.||.|++||+++.... ..+.. |...|.+++|+|+|.+|++++. + .|++||+++++
T Consensus 174 ~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~----~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q----TVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S----BEEEEETTSST
T ss_pred EEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C----eEEEEEcCCCC
Confidence 999998865 79999999999999999998877 66776 7889999999999999999983 2 49999999887
Q ss_pred EEEEEec---CCCCCe--EEEEEeCCCCEEEEEEC-CCeEEEEECCCCceeEEEecCCCCCCcceEEECC---CCCEEEE
Q 002196 589 VKRTYHG---LGKRSV--GVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---EGILLAV 659 (954)
Q Consensus 589 ~~~~~~~---~~~~~i--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~s 659 (954)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++.+....... ..+..++|++ +...+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 6554443 211 33 36999999999999998 999999999766544333 2456788888 8889999
Q ss_pred EeCCCcEEEEEccCC
Q 002196 660 STNDNGIKILANADG 674 (954)
Q Consensus 660 ~~~dg~i~iwd~~~~ 674 (954)
++.||.+.++-....
T Consensus 320 ~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 320 VCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTEEEEEEECSS
T ss_pred EecCCceEEEEecCC
Confidence 999999998865443
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.2e-26 Score=234.35 Aligned_cols=295 Identities=14% Similarity=0.059 Sum_probs=199.0
Q ss_pred ceEEEecCCC-----CeeEEEEcC-CCCeEEEEEEcCCeEEEEeCCCC---ceeeeeeeEEEeccCCCccccccccCCCC
Q 002196 348 TVVMTLNQGS-----AVKSMDFHP-VQQILLVVGTNMGDVMLWEVGSR---ERIAVKSFKVWELGACSMPLQASLSSDYT 418 (954)
Q Consensus 348 ~~~~~~~h~~-----~V~~~~~sp-~g~~ll~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 418 (954)
+++..++... .|.++.|-. ..+.+.+.......|++|+..++ +.+++ +..|.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~ 86 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAE 86 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCS
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccC
Confidence 4555565322 255666644 44444445555689999999998 54443 45566
Q ss_pred CCeEEEEEccCCCEEEEEE-cC-CEEEEEEee--CC-cceeeeeeeecccCCEEEEEEecCCCceEEEEEc--CCCeEEE
Q 002196 419 ASVNRVMWSPDGTLFGVAY-SK-HIVHLYTYH--GG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG--EDRVIKV 491 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~-~d-g~i~iwd~~--~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~--~dg~i~i 491 (954)
.+|..+.|+||..-|++.. .+ ..-.++.+. .. +.......-.+|...|..+ ++++ ++.+++ .|+.|++
T Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~ 161 (356)
T 2w18_A 87 VPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEV 161 (356)
T ss_dssp SCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEE
T ss_pred ceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEE
Confidence 6777777777544332221 11 111111111 00 0111111123344444443 4554 344433 5899999
Q ss_pred EEC-CCCceEEEeccCCCCeEEEeeec-cCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC---ceEEEEECCCCCEE
Q 002196 492 WDA-VTGTKQYIFEGHESPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH---SSTMMAYSADGARL 566 (954)
Q Consensus 492 wd~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~l 566 (954)
|++ .+|+.+..+.+|...+..++|++ ++++.+|++++.|++|++||+++++....+..+.. .+.+++|+|+|.++
T Consensus 162 ~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 162 MTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF 241 (356)
T ss_dssp EEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEE
T ss_pred EEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEE
Confidence 998 45888888889999999999998 66778999999999999999999998888875433 67788999999988
Q ss_pred EEEEe--------CCCCceEEEEEeCCCCeEEEEEe-----cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCcee
Q 002196 567 FSCGT--------NKEGESYLVEWNESEGAVKRTYH-----GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 567 ~~~~~--------~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
++++. .+..+.++++||..+++.+..+. +|.. .+.+..+ ++.++++++.|++|+|||+.+++++
T Consensus 242 vs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l 318 (356)
T 2w18_A 242 IVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT 318 (356)
T ss_dssp EEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE
T ss_pred EEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE
Confidence 76542 23447789999999999877652 4443 3333333 4789999999999999999999999
Q ss_pred EEEecCCCCCCc-ceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 634 ASIDADGGLQAS-PCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 634 ~~~~~~~~~~~v-~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
.++.+| ...+ .+++|+|||++|++|+.|++|+|||+
T Consensus 319 ~tL~gH--~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 319 ALLPPV--SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEecCC--CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999865 3344 46899999999999999999999985
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.1e-25 Score=257.57 Aligned_cols=345 Identities=10% Similarity=0.072 Sum_probs=255.0
Q ss_pred EecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeC--CCCCceeEee
Q 002196 471 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY--DNLGSRVDYD 548 (954)
Q Consensus 471 ~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~ 548 (954)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|++ +++++++.|+.|.+||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778876 789999999999999999999999984433 8888888765 79999999999999999 6666555555
Q ss_pred CCCCceEEEEECC----CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC----------CCCCeEEEEEeCCCCEEE
Q 002196 549 APGHSSTMMAYSA----DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL----------GKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 549 ~~~~~v~~~~~s~----~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~ 614 (954)
.+..+..++|+| +|+++++++.. +..|.+||..+++++..+..+ ....+..+.++|++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~---~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYW---PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEE---SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEcc---CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 455789999999 99999998742 345999999999998888652 233678899999876555
Q ss_pred -EEECCCeEEEEECCCCceeE--EEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEccCCCeeEEEecccccccee
Q 002196 615 -AAGDEFMIKFWDMDNVNLLA--SIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVESRTFDASR 690 (954)
Q Consensus 615 -~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 690 (954)
+...++.|.+||..+.+.+. .+.. ...+..++|+|+|+++++++ .++.|.+||..++ ++...+.....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~---- 367 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKT---- 367 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSS----
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCC----
Confidence 45588999999998876554 3432 34578999999999776554 5889999999988 55554432100
Q ss_pred cchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEec
Q 002196 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (954)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~ 770 (954)
T Consensus 368 -------------------------------------------------------------------------------- 367 (543)
T 1nir_A 368 -------------------------------------------------------------------------------- 367 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceEEEEEecC-CceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccE
Q 002196 771 PDNLTAMRVSRLIYTNS-GLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 848 (954)
Q Consensus 771 ~~~~~~~~v~~~~~spd-g~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~ 848 (954)
.|.+....+ ++|+ |..++++. .|++|.+|++...... + ...+.+. .+.+ |...+..
T Consensus 368 ---ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~-~--------------~~~~~v~-~l~~--~g~~~~~ 425 (543)
T 1nir_A 368 ---PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP-Q--------------YAWKKVA-ELQG--QGGGSLF 425 (543)
T ss_dssp ---BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-T--------------TBTSEEE-EEEC--SCSCCCC
T ss_pred ---CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc-h--------------hcCeEEE-EEEc--CCCCceE
Confidence 022222222 4677 45455554 5799999987641100 0 0012222 2333 6677888
Q ss_pred EEeccCCCeEEEec--------CCeEEEEEcccccEE-Eee--------CCCCCCeeEEEecCCCCceEEEEe-----cC
Q 002196 849 FALSKNDSYVMSAS--------GGKISLFNMMTFKTM-TTF--------MPPPPAATFLAFHPQDNNIIAIGM-----ED 906 (954)
Q Consensus 849 ~~~s~dg~~la~~s--------dg~i~iwd~~~~~~~-~~~--------~~h~~~v~~l~~sp~d~~~lasgs-----~d 906 (954)
++++|||++|++++ +++|.|||+.+++.. ..+ ..+...+..++|+| ||+.|.++. .|
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~ 504 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDS 504 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSC
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCC
Confidence 99999999999986 569999999998876 443 34567799999999 888887663 47
Q ss_pred ccEEEEeccccceEEEecCCccceeEEEEecCCCe
Q 002196 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV 941 (954)
Q Consensus 907 g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 941 (954)
+.|.|||.+|++++.+++.+.- .+|+|++
T Consensus 505 ~~i~v~D~~t~~~~~~i~~~~~------~~p~g~~ 533 (543)
T 1nir_A 505 SALVVVDDKTLKLKAVVKDPRL------ITPTGKF 533 (543)
T ss_dssp CEEEEEETTTTEEEEEECCTTC------CSEEEEE
T ss_pred CeEEEEECCCceEEEeecCCCc------cCCCeee
Confidence 9999999999999999986531 4566655
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.3e-25 Score=254.98 Aligned_cols=277 Identities=13% Similarity=0.105 Sum_probs=218.4
Q ss_pred EEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccC-CCCCCeEEEEEccCCCEEEEEEcCCE
Q 002196 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS-DYTASVNRVMWSPDGTLFGVAYSKHI 441 (954)
Q Consensus 363 ~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~~~dg~ 441 (954)
+|+|++. ++++++.|++|.+||..+++.+.+ +. ++. +.+++|||||++|++++.|+.
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3788886 889999999999999999987754 22 333 889999999999999999999
Q ss_pred EEEEEe--eCCcceeeeeeeecccCCEEEEEEec----CCCceEEEEEc-CCCeEEEEECCCCceEEEeccC--------
Q 002196 442 VHLYTY--HGGDELRNHLEIEAHVGSVNDLAFSY----PNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGH-------- 506 (954)
Q Consensus 442 i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------- 506 (954)
|.+||+ .+++.+. .+. +...+..++|+| ||+ ++++++ .+++|.+||..+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776555 444 455689999999 999 466665 5899999999999999888652
Q ss_pred --C-CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee-EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 507 --E-SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 507 --~-~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
. ..+.++.+++++. .++++...++.|.+||+.+.+... ........+..+.|+|+|+++++++.. +..|.+|
T Consensus 276 ~~~~~~v~~i~~s~~~~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~ 351 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHP-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN---SNKVAVI 351 (543)
T ss_dssp EESCCCEEEEEECSSSS-EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG---GTEEEEE
T ss_pred cccCCceEEEEECCCCC-EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC---CCeEEEE
Confidence 2 2688888887654 678888899999999998765443 122245567889999999998877642 3459999
Q ss_pred eCCCCeEEEEEec----CCCCCeEEEEEeCC-CCEEEEEE-CCCeEEEEECCC-------CceeEEEecCCCCCCcceEE
Q 002196 583 NESEGAVKRTYHG----LGKRSVGVVQFDTT-KNRFLAAG-DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIR 649 (954)
Q Consensus 583 d~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~ 649 (954)
|..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||..+ .+.++++..++ ..+..++
T Consensus 352 D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEE
Confidence 9999999988875 332 22222 5787 55556655 689999999998 88999998764 4678899
Q ss_pred ECCCCCEEEEEe-------CCCcEEEEEccCCC
Q 002196 650 FNKEGILLAVST-------NDNGIKILANADGI 675 (954)
Q Consensus 650 ~s~~~~~l~s~~-------~dg~i~iwd~~~~~ 675 (954)
++|++++|++++ .++.|.+||+.++.
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 999999999987 26799999999874
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=5.3e-25 Score=244.60 Aligned_cols=306 Identities=10% Similarity=0.049 Sum_probs=223.6
Q ss_pred CCeEEEeeeccCCccEEEEEe----cCC----eEEEEeC--CCCCcee--EeeCCCCceEEEEECC--------------
Q 002196 508 SPVYSICPHHKENIQFIFSTA----TDG----KIKAWLY--DNLGSRV--DYDAPGHSSTMMAYSA-------------- 561 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s----~dg----~i~iwd~--~~~~~~~--~~~~~~~~v~~~~~s~-------------- 561 (954)
..+....|.+.+. .++++|+ .+| .|++||+ .+++... .+..+...+..+++++
T Consensus 63 ~~~~~~~w~~~g~-~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGI-DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTC-CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCC-CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3455566665543 5777776 467 8999999 8777653 3555655666555553
Q ss_pred CCCEEEEEEeCCCCc--eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC---eEEEEECCCCceeEEE
Q 002196 562 DGARLFSCGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASI 636 (954)
Q Consensus 562 ~g~~l~~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 636 (954)
.+..++.++.+...+ ..|++||... .....+..|.. .+.+++|+|+|+.|++++.++ .|++||+.+++... +
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence 266677766543211 6899999974 44566666665 899999999999999999775 99999999988754 4
Q ss_pred ecCCCCCCcceEEECCCCCEEE-EEeCCCc--EEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcc
Q 002196 637 DADGGLQASPCIRFNKEGILLA-VSTNDNG--IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (954)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (954)
..+ ...+.+++|+|||+.|+ +++.++. |++||+.++. . ..+.
T Consensus 219 ~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l~------------------------------- 263 (415)
T 2hqs_A 219 ASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQVT------------------------------- 263 (415)
T ss_dssp ECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EECC-------------------------------
T ss_pred ecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeCc-------------------------------
Confidence 333 45789999999999887 5665554 8888987662 1 1111
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEE
Q 002196 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA 793 (954)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 793 (954)
.+...+.+++|+|||++|++
T Consensus 264 ------------------------------------------------------------~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 264 ------------------------------------------------------------DGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEECTTSSEEEE
T ss_pred ------------------------------------------------------------CCCCcccceEECCCCCEEEE
Confidence 13456788999999999988
Q ss_pred eec-CCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-C---CeEEE
Q 002196 794 LAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISL 868 (954)
Q Consensus 794 ~~~-dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d---g~i~i 868 (954)
++. ++..+||. ||..++.... +.. +...+.+++|||||++|++++ + ..|++
T Consensus 284 ~s~~~g~~~i~~--------------------~d~~~~~~~~--l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~ 339 (415)
T 2hqs_A 284 TSDQAGRPQVYK--------------------VNINGGAPQR--ITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAK 339 (415)
T ss_dssp EECTTSSCEEEE--------------------EETTSSCCEE--CCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred EECCCCCcEEEE--------------------EECCCCCEEE--Eec--CCCcccCeEECCCCCEEEEEECcCCceEEEE
Confidence 886 56444442 2333333222 222 556788999999999999887 4 47999
Q ss_pred EEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCc---cEEEEeccccceEEEecCCccceeEEEEecCCC
Q 002196 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS---SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 940 (954)
Q Consensus 869 wd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg---~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 940 (954)
||+.+++.. .+..+. .+.+++|+| ||++|++++.++ .|++||+. ++....+.+|.+.|++++|||.-.
T Consensus 340 ~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 340 QDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 999988874 455554 899999999 999999998887 79999987 556788999999999999999643
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1e-24 Score=242.30 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=233.2
Q ss_pred CCeeEEEEcCCCCeEEEEEE----cCC----eEEEEeC--CCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGT----NMG----DVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (954)
..|...+|++.|..++++|+ .+| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888899999988888887 457 8999999 8888664322 3457777777777
Q ss_pred cc--------------CCCEEEEEEcC------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC
Q 002196 427 SP--------------DGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (954)
Q Consensus 427 sp--------------dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d 486 (954)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...+.+++|+|||+ .|++++.+
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 65 26677777664 799999998543 33 5778999999999999999 57888877
Q ss_pred C---eEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEE-EEecCCe--EEEEeCCCCCceeEeeCCCCceEEEEEC
Q 002196 487 R---VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-STATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYS 560 (954)
Q Consensus 487 g---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s 560 (954)
+ .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.++. |++||+.+... ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999999876 5666 6666655 99999987654 4555566789999999
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC---CeEEEEECCCCceeEEEe
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASID 637 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 637 (954)
|||+.|++++.+ ++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 999999988742 33557999999888743 3444433 78889999999999988854 68999999988764 343
Q ss_pred cCCCCCCcceEEECCCCCEEEEEeCCC---cEEEEEccCCCeeEEEeccccccceecchh
Q 002196 638 ADGGLQASPCIRFNKEGILLAVSTNDN---GIKILANADGIRLLRTVESRTFDASRVASA 694 (954)
Q Consensus 638 ~~~~~~~v~~v~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 694 (954)
.+ . .+.+++|+|+|++|++++.++ .|++||+.. ...+.+.++...+..+++.
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g--~~~~~l~~~~~~v~~~~~~ 406 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWS 406 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS--CCEEECCCSSSEEEEEEEC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC--CcEEEeeCCCCCCcCCccc
Confidence 32 2 788999999999999888877 799999874 4567778887777765443
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=7.2e-24 Score=256.19 Aligned_cols=299 Identities=12% Similarity=0.055 Sum_probs=211.9
Q ss_pred CCCeeEEEEcCCCCeEEEEEEc-CC-----eEEEEeCCCCceeeeeeeEEEeccCCC----------ccccccccCCCCC
Q 002196 356 GSAVKSMDFHPVQQILLVVGTN-MG-----DVMLWEVGSRERIAVKSFKVWELGACS----------MPLQASLSSDYTA 419 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~ 419 (954)
...|.+++|||||+ .|++++. || .|++||+.+++....... .... .............
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS-----KVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECG-----GGTC--------------------CCE
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccch-----hhcccccccccchhhhhhhhhhhcccc
Confidence 34789999999999 5666666 88 899999999876543110 0000 0000000000013
Q ss_pred CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc--ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
.|.+++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|+.++ ++.|++||+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCC
Confidence 4889999999999999987 999999999872 233 4667888999999999999 466665 469999999998
Q ss_pred ceEEEeccCCCC----------------eEEEeeeccCCccEEEEEecCC------------------------------
Q 002196 498 TKQYIFEGHESP----------------VYSICPHHKENIQFIFSTATDG------------------------------ 531 (954)
Q Consensus 498 ~~~~~~~~~~~~----------------v~~~~~~~~~~~~~l~s~s~dg------------------------------ 531 (954)
+.......+... +.+++|+|++ ++|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 876655544432 3667887765 7888887765
Q ss_pred ---eEEEEeCCC-CCceeEee--CCCCceEEEEECCCCCEEEEEEeC-CCCceEEEEEeCCCCeEEEEEecCCCC---Ce
Q 002196 532 ---KIKAWLYDN-LGSRVDYD--APGHSSTMMAYSADGARLFSCGTN-KEGESYLVEWNESEGAVKRTYHGLGKR---SV 601 (954)
Q Consensus 532 ---~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~---~i 601 (954)
.|++||+.+ .+...... .+...+..++| |||+.|++++.+ ...+..|++||+.+++....+..+... .+
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 788999987 66544332 24457899999 999999987653 234567999999999887776655432 23
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECC-CCceeEEEecCCCCCCcceE-EECCCCCEEEEE-eCCC--cEEEEEccC
Q 002196 602 GVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGGLQASPCI-RFNKEGILLAVS-TNDN--GIKILANAD 673 (954)
Q Consensus 602 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~s~-~~dg--~i~iwd~~~ 673 (954)
..++|+|||+++++++.||.+.||.+. ++. ...+..+ ...+..+ .|+|+|+.|+.. +.++ .+++|++..
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 578999999988888899977777665 344 5555443 4467676 599999877554 4454 888998754
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.2e-23 Score=254.31 Aligned_cols=329 Identities=7% Similarity=-0.002 Sum_probs=239.0
Q ss_pred cCCEEEEEEecCCCceEEEEEcC-CC-----eEEEEECCCCceEEEeccCCCC------------------------eEE
Q 002196 463 VGSVNDLAFSYPNKQLSVVTCGE-DR-----VIKVWDAVTGTKQYIFEGHESP------------------------VYS 512 (954)
Q Consensus 463 ~~~v~~~~~s~~~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~------------------------v~~ 512 (954)
...+.+++|+|||+ .|++++. |+ .|++||+.+++....+..+... |.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 45689999999999 5788877 88 9999999999887777654332 778
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCC--ceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
++|+|++ ++|++++. +.|++||+.+.. ....+..+...+..++|||||++|++++. ..|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence 8888766 78888886 999999998863 34445555678999999999999998863 25999999998776
Q ss_pred EEEecCCCC---------------CeEEEEEeCCCCEEEEEECCC---------------------------------eE
Q 002196 591 RTYHGLGKR---------------SVGVVQFDTTKNRFLAAGDEF---------------------------------MI 622 (954)
Q Consensus 591 ~~~~~~~~~---------------~i~~~~~~~~~~~l~~~~~dg---------------------------------~i 622 (954)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 554433220 136789999999999988665 89
Q ss_pred EEEECCC-CceeEEEecCCCCCCcceEEECCCCCEEEEEeC-----CCcEEEEEccCCCeeEEEeccccccceecchhcc
Q 002196 623 KFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTN-----DNGIKILANADGIRLLRTVESRTFDASRVASAAI 696 (954)
Q Consensus 623 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 696 (954)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++ +....+..+...
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~--------- 334 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPT--------- 334 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSS---------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCC---------
Confidence 9999988 776554432233457889999 99999987764 567999998877 333322211100
Q ss_pred ccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCc
Q 002196 697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776 (954)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 776 (954)
..
T Consensus 335 ------------------------------------------------------------------------------~~ 336 (741)
T 2ecf_A 335 ------------------------------------------------------------------------------WV 336 (741)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred cceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEE-EeccCC
Q 002196 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF-ALSKND 855 (954)
Q Consensus 777 ~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~dg 855 (954)
..+..++|+|||+.+++++.+|.++||.++ ...+ . ..+.. +...+..+ +|||||
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~--------------------~~~~-~--~~l~~--~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRID--------------------SKGK-A--AALTH--GNWSVDELLAVDEKA 391 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEEC--------------------SSSC-E--EESCC--SSSCEEEEEEEETTT
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEc--------------------CCCC-e--eeeee--cceEEEeEeEEeCCC
Confidence 123457899999988888889988998654 2222 1 12333 56677777 599999
Q ss_pred CeEEEe-c-CC--eEEEEEccc-ccEEEeeCCCCCCeeEEEecCCCCceEEEEecC----ccEEEEecccc
Q 002196 856 SYVMSA-S-GG--KISLFNMMT-FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED----SSIQIYNVRVD 917 (954)
Q Consensus 856 ~~la~~-s-dg--~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~d----g~i~iwd~~~~ 917 (954)
+.|+.. + ++ .++||++.. +.....+.. ...+..++||| ||++|+....+ ..+++|+..++
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFAR-NASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECT-TSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECC-CCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 987654 4 44 899999874 555666765 66789999999 88888776544 47889987644
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.3e-23 Score=253.26 Aligned_cols=287 Identities=11% Similarity=0.075 Sum_probs=209.5
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCC---CeEEEEEccCCCEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA---SVNRVMWSPDGTLFG 434 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l~ 434 (954)
.+.+++|+|||+ ++++ +.||+|++||+.+++.... +..|.. .|.+++|||||++|+
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 467889999999 5565 6899999999999876542 334443 499999999999999
Q ss_pred EEEcC---------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc
Q 002196 435 VAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (954)
Q Consensus 435 s~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 505 (954)
+++.+ +.+++||+.+++. .......+|...+..++|||||+. |+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~--la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ--LIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC--EEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE--EEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7889999998875 222233445556899999999994 666665 7999999999888776665
Q ss_pred CCCCe------------------EEEeeeccCCccEEEEEecCC----------------------------------eE
Q 002196 506 HESPV------------------YSICPHHKENIQFIFSTATDG----------------------------------KI 533 (954)
Q Consensus 506 ~~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i 533 (954)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 678888766 7888887553 79
Q ss_pred EEEeCCCCCceeEeeCC------CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCe----EE
Q 002196 534 KAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV----GV 603 (954)
Q Consensus 534 ~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i----~~ 603 (954)
++||+.+......+..+ ...+..++|+|||+++++....+.....|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887654444433 447889999999998877765555567899999999987766654432233 37
Q ss_pred EEEeCCCCEEEEE--ECCC------eEEEEE-CCCCce--eEEEecCCCCCCcce-EEECCCCCEEEEEeCC---CcEEE
Q 002196 604 VQFDTTKNRFLAA--GDEF------MIKFWD-MDNVNL--LASIDADGGLQASPC-IRFNKEGILLAVSTND---NGIKI 668 (954)
Q Consensus 604 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~s~~~d---g~i~i 668 (954)
++|+|||+.|+.. ..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577788 444441 3334321 223444 6899999999876655 78899
Q ss_pred EEccC
Q 002196 669 LANAD 673 (954)
Q Consensus 669 wd~~~ 673 (954)
|++..
T Consensus 389 ~~~~~ 393 (723)
T 1xfd_A 389 YSANT 393 (723)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98764
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=3.1e-23 Score=249.95 Aligned_cols=367 Identities=10% Similarity=0.029 Sum_probs=242.0
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccC---CEEEEEEecCCCceEEEEEcCC---------
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG---SVNDLAFSYPNKQLSVVTCGED--------- 486 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~~~l~s~~~d--------- 486 (954)
..+.+++|||||+++++ +.||+|++||+.+++... .+..|.. .|.+++|||||+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence 45778999999998876 689999999999987654 4555554 499999999999 57777654
Q ss_pred CeEEEEECCCCceEEEec---cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCc----------
Q 002196 487 RVIKVWDAVTGTKQYIFE---GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS---------- 553 (954)
Q Consensus 487 g~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------- 553 (954)
+.+++||+.+++. ..+. +|...+..++|+|++ +.|++++. +.|++||+.++........+...
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG--~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG--QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST--TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEECCCC--CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 7899999999876 3343 344558888998766 68888876 79999999887665544433322
Q ss_pred --------eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 554 --------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 554 --------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
+.+++|||||+.|++++.++.. +.+|++.... ......+..+.|.++|.. ..+..|++|
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~G~~----~~~~~l~~~ 233 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSR---VPIMELPTYT------GSIYPTVKPYHYPKAGSE----NPSISLHVI 233 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTT---SCEEEECCCS------SSSSCCCEEEECCBTTSC----CCEEEEEEE
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCc---cceEEeeccC------CcCCCcceeccCCCCCCC----CCeeEEEEE
Confidence 2789999999999998865432 4556643211 111124677888887752 345689999
Q ss_pred ECCCCceeEEEecCC----CCCCcceEEECCCCCEEEEEeC----CCcEEEEEccCCCeeEEEeccccccceecchhccc
Q 002196 626 DMDNVNLLASIDADG----GLQASPCIRFNKEGILLAVSTN----DNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697 (954)
Q Consensus 626 d~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 697 (954)
|+.+++....+..+. +...+..++|+|||+++++.+. +..|++||+.++ +....+..+...
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~---------- 302 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEA---------- 302 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSS----------
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCC----------
Confidence 999988656665321 1346788999999998877653 357899998877 333322111000
Q ss_pred cCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCcc
Q 002196 698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (954)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (954)
| ...
T Consensus 303 --------------------------------------------------------~--------------------~~~ 306 (723)
T 1xfd_A 303 --------------------------------------------------------W--------------------LHR 306 (723)
T ss_dssp --------------------------------------------------------C--------------------CCC
T ss_pred --------------------------------------------------------E--------------------Eec
Confidence 0 000
Q ss_pred ceEEEEEecCCceEEEe--ecCC----eEEEeeccCCCCCCCCcccCCCCccccC-CCCcc---cccccCCCCCCCCCcc
Q 002196 778 RVSRLIYTNSGLAILAL--ASNA----VHKLWKWPRNERNSTGKATTNQAPQLWQ-PPSGI---LMTNDISDTNPEDAVP 847 (954)
Q Consensus 778 ~v~~~~~spdg~~l~~~--~~dg----~v~lw~~~~~~~~~~g~~~~~~~i~l~~-~~~~~---~~~~~~~~~~~~~~v~ 847 (954)
....++|+|||+.|+.. ..++ ..+||.+ + ..++. ... +.. ....+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~--------------------d~~~~~~~~~~~~--l~~--~~~~~~ 362 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS--------------------SSQPNSSNDNIQS--ITS--GDWDVT 362 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE--------------------CSSCCSSSCCCCB--SCC--SSSCEE
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEE--------------------eccCCCCccceeE--eec--CCeEEE
Confidence 01246899999988764 3466 5555532 2 12222 111 221 223344
Q ss_pred E-EEeccCCCeEEEec-C---CeEEEEEccccc--EEEeeCC---CCCCeeEEEecCCCCceEEEEecC-c--cEEEEec
Q 002196 848 C-FALSKNDSYVMSAS-G---GKISLFNMMTFK--TMTTFMP---PPPAATFLAFHPQDNNIIAIGMED-S--SIQIYNV 914 (954)
Q Consensus 848 ~-~~~s~dg~~la~~s-d---g~i~iwd~~~~~--~~~~~~~---h~~~v~~l~~sp~d~~~lasgs~d-g--~i~iwd~ 914 (954)
. ++|||||++|+..+ + +.++||++.... ....+.. |...+..++||| ||++|+..... + ...+++.
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~~~~~~ 441 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSH-SMDFFLLKCEGPGVPMVTVHNT 441 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECT-TSSEEEEECCSSSSCCEEEEET
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECC-CCCEEEEEccCCCCCeEEEEEC
Confidence 4 69999999997665 4 789999986432 3444543 567789999999 88877765332 2 2344555
Q ss_pred cccceE
Q 002196 915 RVDEVK 920 (954)
Q Consensus 915 ~~~~~~ 920 (954)
.+++.+
T Consensus 442 ~~~~~~ 447 (723)
T 1xfd_A 442 TDKKKM 447 (723)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 444433
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=7.3e-22 Score=213.20 Aligned_cols=281 Identities=11% Similarity=0.073 Sum_probs=206.8
Q ss_pred EEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc-CC
Q 002196 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-KH 440 (954)
Q Consensus 362 ~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~-dg 440 (954)
..|.+++++++++++.++.|.+||..+++.... ...+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777887889999999999999999987653 22244556 9999999998777766 88
Q ss_pred EEEEEEeeCCcc-eeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-C--eEEEEECCCCceEEEeccCCCCeEEEeee
Q 002196 441 IVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-R--VIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (954)
Q Consensus 441 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 516 (954)
.|.+||+.+++. .. .+..+..+..+++|+|+++ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666665599999999 45655444 3 9999999999988887654 446889998
Q ss_pred ccCCccEEEEEecCCe-EEEEeCCCCCcee----EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE--
Q 002196 517 HKENIQFIFSTATDGK-IKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-- 589 (954)
Q Consensus 517 ~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-- 589 (954)
|++. .++++...++. |.+|+++..+... ...........++|+|+|++++++... +..|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI---GNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcccc
Confidence 8763 34555566688 9999998655432 222334568999999999988776532 44699999999887
Q ss_pred -EEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCce--eEEEecC--CCCC---CcceEEECCCCCEEEEE
Q 002196 590 -KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL--LASIDAD--GGLQ---ASPCIRFNKEGILLAVS 660 (954)
Q Consensus 590 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~v~~s~~~~~l~s~ 660 (954)
+..+.... .+..++|+|+|+++++++ .++.|.+||..+++. +..+... .... ....++|+|+|++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776542 677899999999877665 578899999999877 4444322 1111 12458999999988665
Q ss_pred eC-CCcEEEEEccCC
Q 002196 661 TN-DNGIKILANADG 674 (954)
Q Consensus 661 ~~-dg~i~iwd~~~~ 674 (954)
+. ++.|.+||+...
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 54 579999999765
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.4e-22 Score=241.22 Aligned_cols=358 Identities=11% Similarity=0.054 Sum_probs=233.7
Q ss_pred CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcce-eeeeeeeccc-----------------CCEEEEEEecCCCceEEE
Q 002196 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHV-----------------GSVNDLAFSYPNKQLSVV 481 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~~~~~~~l~ 481 (954)
.+..+.|+ |+.+++++.++ | +||+.+++.+ . .+..|. ..|.+++|+|| +. +++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVL 97 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-TE-EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-Ce-EEE
Confidence 35567888 77778888888 8 9999998762 3 223332 56999999999 53 333
Q ss_pred EEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC-----CCceeEeeCCCCc---
Q 002196 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN-----LGSRVDYDAPGHS--- 553 (954)
Q Consensus 482 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~--- 553 (954)
+ .++.|++||+.+++... +..+...+.+++|+|++ ++|+++ .++.|++||+.+ ++...........
T Consensus 98 ~--~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 98 F--TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp E--ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred E--ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 3 35999999998887654 44467778888998766 678774 689999999987 5554433322222
Q ss_pred -----------eEEEEECCCCCEEEEEEeCC-----------------------------CCceEEEEEeCCCCeEEEEE
Q 002196 554 -----------STMMAYSADGARLFSCGTNK-----------------------------EGESYLVEWNESEGAVKRTY 593 (954)
Q Consensus 554 -----------v~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~ 593 (954)
+.++.|+|||++|++++.+. ..+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987432 23567999999998865544
Q ss_pred ec-CCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCceeEEEecCCCC---CCcceEEECC--CCCEEEEEeC
Q 002196 594 HG-LGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGL---QASPCIRFNK--EGILLAVSTN 662 (954)
Q Consensus 594 ~~-~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~--~~~~l~s~~~ 662 (954)
.. .+...+..++|+|||++|++++.++ .|++||+.+++....+...... ..+.+++|+| ||+++++++.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 32 2233688999999999999988665 9999999998444333211111 2347889999 9999999999
Q ss_pred CCcEEEEEcc-CCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcc
Q 002196 663 DNGIKILANA-DGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741 (954)
Q Consensus 663 dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (954)
||.+++|.+. ++ ...+.+..
T Consensus 332 ~g~~~l~~~~~~~-~~~~~l~~---------------------------------------------------------- 352 (706)
T 2z3z_A 332 DGWNHLYLYDTTG-RLIRQVTK---------------------------------------------------------- 352 (706)
T ss_dssp TSSCEEEEEETTS-CEEEECCC----------------------------------------------------------
T ss_pred CCccEEEEEECCC-CEEEecCC----------------------------------------------------------
Confidence 9999999875 22 22221110
Q ss_pred cccccccccccccccccccCCCceeEEecCCCCCccceEE-EEEecCCceEEEeecC-C--eEEEeeccCCCCCCCCccc
Q 002196 742 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR-LIYTNSGLAILALASN-A--VHKLWKWPRNERNSTGKAT 817 (954)
Q Consensus 742 lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~~d-g--~v~lw~~~~~~~~~~g~~~ 817 (954)
+...+.. ++|+|||+.|++++.+ + .+.||.+
T Consensus 353 ---------------------------------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~------------ 387 (706)
T 2z3z_A 353 ---------------------------------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI------------ 387 (706)
T ss_dssp ---------------------------------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE------------
T ss_pred ---------------------------------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE------------
Confidence 2234554 7999999988776654 3 3556543
Q ss_pred CCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-C----CeEEEEEcccccEEEeeCCCCCCeeEEEe
Q 002196 818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G----GKISLFNMMTFKTMTTFMPPPPAATFLAF 892 (954)
Q Consensus 818 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 892 (954)
+..++.... +. +...+.+++|||||++++... + +.|++||+.+++ ...+. +...+....+
T Consensus 388 --------d~~~~~~~~--l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~ 452 (706)
T 2z3z_A 388 --------DIKGGKTKD--LT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM 452 (706)
T ss_dssp --------ETTCCCCEE--SC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred --------EcCCCCcee--cc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence 233333221 11 456688999999999988764 3 569999998877 43333 3444555555
Q ss_pred cCCCCceEEEEecCc--cEEEEe
Q 002196 893 HPQDNNIIAIGMEDS--SIQIYN 913 (954)
Q Consensus 893 sp~d~~~lasgs~dg--~i~iwd 913 (954)
.+ . ..+-.-+.|| .+..|-
T Consensus 453 ~~-~-~~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 453 PE-I-RTGTIMAADGQTPLYYKL 473 (706)
T ss_dssp CC-E-EEEEEECTTSSSEEEEEE
T ss_pred CC-c-EEEEEEcCCCCEEEEEEE
Confidence 44 2 2333334455 455443
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.4e-22 Score=243.21 Aligned_cols=323 Identities=10% Similarity=0.076 Sum_probs=220.4
Q ss_pred EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE-EEeccCC-----------------CCeEEEeeeccCCccEEEEE
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEGHE-----------------SPVYSICPHHKENIQFIFST 527 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~l~s~ 527 (954)
+..+.|+ |+ .+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|+++ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 4557888 55 366677777 8 9999999873 3333332 46899999886 244444
Q ss_pred ecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-----CeEEEEEecCCCC---
Q 002196 528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-----GAVKRTYHGLGKR--- 599 (954)
Q Consensus 528 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~~--- 599 (954)
.++.|++||+.+.+.. .+..+...+.+++|+|||+.|+++. +..|++||+.+ ++.......+...
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876443 3344456788899999999999863 23599999998 7765544333221
Q ss_pred ----------CeEEEEEeCCCCEEEEEE---------------------------------CCCeEEEEECCCCceeEEE
Q 002196 600 ----------SVGVVQFDTTKNRFLAAG---------------------------------DEFMIKFWDMDNVNLLASI 636 (954)
Q Consensus 600 ----------~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 636 (954)
.+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 147899999999999987 4578999999988765544
Q ss_pred ecCCCCCCcceEEECCCCCEEEEEeCCC-----cEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCC
Q 002196 637 DADGGLQASPCIRFNKEGILLAVSTNDN-----GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (954)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 711 (954)
....+...+.+++|+|||+.|++++.++ .|++||+.++. ..+.+......
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~------------------------ 306 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDK------------------------ 306 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECS------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCC------------------------
Confidence 3323345688999999999999887775 89999988772 22222110000
Q ss_pred ccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEec--CCc
Q 002196 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN--SGL 789 (954)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~ 789 (954)
.....+..++|+| ||+
T Consensus 307 --------------------------------------------------------------~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 307 --------------------------------------------------------------HYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp --------------------------------------------------------------SCCCCCSCCEECTTCSSE
T ss_pred --------------------------------------------------------------CeECccCCceeecCCCCE
Confidence 0011234578999 999
Q ss_pred eEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccE-EEeccCCCeEEEec--CC--
Q 002196 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC-FALSKNDSYVMSAS--GG-- 864 (954)
Q Consensus 790 ~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~la~~s--dg-- 864 (954)
+++++..+|.+++|.+.. ..+.... +.. +...+.. ++|+|||+.|+.++ ++
T Consensus 325 ~l~~~~~~g~~~l~~~~~--------------------~~~~~~~--l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDT--------------------TGRLIRQ--VTK--GEWEVTNFAGFDPKGTRLYFESTEASPL 380 (706)
T ss_dssp EEEEECTTSSCEEEEEET--------------------TSCEEEE--CCC--SSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred EEEEEccCCccEEEEEEC--------------------CCCEEEe--cCC--CCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence 888888899999997641 1111111 222 5556766 79999999887665 44
Q ss_pred --eEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecC----ccEEEEeccccc
Q 002196 865 --KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED----SSIQIYNVRVDE 918 (954)
Q Consensus 865 --~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~d----g~i~iwd~~~~~ 918 (954)
.|+.||+.+++ ...+. |...+.+++||| ||++|+.++.+ +.|++||+.+++
T Consensus 381 ~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 381 ERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 67777877766 33444 677799999999 88888776544 469999999887
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=4.9e-21 Score=208.74 Aligned_cols=279 Identities=11% Similarity=0.088 Sum_probs=216.1
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEEEc------CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 351 MTLNQGSAVKSMDFHPVQQILLVVGTN------MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~ll~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
........+..++|+|+|++++++... ++.|.+||..+++...... ....+..+
T Consensus 35 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~ 94 (353)
T 3vgz_A 35 LRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGA 94 (353)
T ss_dssp EEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSE
T ss_pred hhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceE
Confidence 344456678999999999966555533 6789999999988765311 23457789
Q ss_pred EEccCCCEEEEEE-cCCEEEEEEeeCCcceeeeeeeecccC---------CEEEEEEecCCCceEEEEE-cCCCeEEEEE
Q 002196 425 MWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEAHVG---------SVNDLAFSYPNKQLSVVTC-GEDRVIKVWD 493 (954)
Q Consensus 425 ~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~~~~~~~l~s~-~~dg~i~iwd 493 (954)
+|+|+|+++++++ .++.|.+||..+++... .+..+.. .+.+++|+|+++.+ ++++ +.++.|.+||
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTV-YISGIGKESVIWVVD 170 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEE-EEEEESSSCEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEE-EEEecCCCceEEEEc
Confidence 9999999766554 47999999999987655 3333322 27899999999963 3333 4689999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC----CCCceEEEEECCCCCEEEEE
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA----PGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~ 569 (954)
..+++.+..+..+...+.+++|++++ +++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCCCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998888666668888888766 6899999999999999998776665554 34467889999999988877
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceE
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 648 (954)
..+ +..|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+... ..+.++
T Consensus 249 ~~~---~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~ 319 (353)
T 3vgz_A 249 DSK---AAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---THPNSL 319 (353)
T ss_dssp ESS---SSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---SEEEEE
T ss_pred eCC---CCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---CCCCeE
Confidence 642 4569999999999888887643 25689999999777666 7899999999999998888654 257899
Q ss_pred EECCCCCEEEEEeCCC
Q 002196 649 RFNKEGILLAVSTNDN 664 (954)
Q Consensus 649 ~~s~~~~~l~s~~~dg 664 (954)
+|+|+|++|+++..++
T Consensus 320 ~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEccc
Confidence 9999999777766553
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=9e-21 Score=205.69 Aligned_cols=307 Identities=9% Similarity=0.104 Sum_probs=203.3
Q ss_pred EEEEEecCCeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC--CCe--EEEEEecC
Q 002196 523 FIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGA--VKRTYHGL 596 (954)
Q Consensus 523 ~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~--~~~~~~~~ 596 (954)
.+++++.|+.|++||++.... ......+...+..++|+|+|+++++++.+ +..+.+|++. +++ .+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP---EFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecC---CCeEEEEEecCCCCceeeccccccC
Confidence 444447899999999964332 22233455678899999999999988753 2469999987 554 33445443
Q ss_pred CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC---CceeEEEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEc
Q 002196 597 GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN---VNLLASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILAN 671 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~ 671 (954)
. .+..++|+|+++++++++ .++.|++||+.. .+....+.. ...+.+++|+|+|+++++++ .++.|++||+
T Consensus 84 ~--~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 84 G--SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp S--CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred C--CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 3 678899999999888777 488999999943 344444432 33588999999999888877 8899999999
Q ss_pred cCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccc
Q 002196 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (954)
Q Consensus 672 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i 751 (954)
.+..+.......
T Consensus 159 ~~~~~~~~~~~~-------------------------------------------------------------------- 170 (343)
T 1ri6_A 159 SDDGHLVAQDPA-------------------------------------------------------------------- 170 (343)
T ss_dssp CTTSCEEEEEEE--------------------------------------------------------------------
T ss_pred cCCCceeeeccc--------------------------------------------------------------------
Confidence 762122111000
Q ss_pred cccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCc
Q 002196 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG 830 (954)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~ 830 (954)
....+ ....+..++|+|+|+++++++ .++.+.+|++.... +... . .
T Consensus 171 ---------------~~~~~---~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~----g~~~------~-----~ 217 (343)
T 1ri6_A 171 ---------------EVTTV---EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH----GNIE------C-----V 217 (343)
T ss_dssp ---------------EEECS---TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT----SCCE------E-----E
T ss_pred ---------------ccccC---CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC----CcEE------E-----E
Confidence 00000 123466799999999876665 68999999875311 0000 0 0
Q ss_pred ccccccCCCCCCCCCccEEEeccCCCeEEEe-c-CCeEEEEEcc----cccEEEeeCCCCCCeeEEEecCCCCceEEEEe
Q 002196 831 ILMTNDISDTNPEDAVPCFALSKNDSYVMSA-S-GGKISLFNMM----TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (954)
Q Consensus 831 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-s-dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs 904 (954)
........+......+.+++|+|||++|+++ . ++.|.+||+. +.+.+..+..+.. +..++|+| +|++|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~ 295 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAG 295 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEEC
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEec
Confidence 0000000110123456789999999988744 4 7999999998 3455555655544 89999999 888888777
Q ss_pred -cCccEEEEecc--ccc--eEEEecCCccceeEEEEecCCCe
Q 002196 905 -EDSSIQIYNVR--VDE--VKTKLKGHQKRITGLAFSNTLNV 941 (954)
Q Consensus 905 -~dg~i~iwd~~--~~~--~~~~~~~h~~~V~~l~~s~dg~~ 941 (954)
.++.|.+|+++ +++ .+..+... ....+++|.++.+.
T Consensus 296 ~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 296 QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred CCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence 68999999654 564 34455443 45678889887543
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.8e-21 Score=206.11 Aligned_cols=254 Identities=11% Similarity=0.054 Sum_probs=191.1
Q ss_pred CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC-CceeEEEecCCCCCCcceEEECCC
Q 002196 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
.+..|++||+.+++..... .+.. .+.+++|+|+++++++++ ++.|++||+.+ ++.......+ ....+.+++|+|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW-QTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-ATICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE-EESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-CCCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeec-cCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-ccccccceEECCC
Confidence 3667999999998876444 4444 799999999999999987 78999999998 7776555433 2357889999999
Q ss_pred CCEEEEEe--CCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCC
Q 002196 654 GILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (954)
Q Consensus 654 ~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (954)
+++|++++ .++...+|.+.........+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------------------------------------- 125 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLM-------------------------------------------------- 125 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEEC--------------------------------------------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEe--------------------------------------------------
Confidence 99999998 34556666543210000000
Q ss_pred CCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEE-EeecCCeEEEeeccCCCC
Q 002196 732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL-ALASNAVHKLWKWPRNER 810 (954)
Q Consensus 732 ~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~dg~v~lw~~~~~~~ 810 (954)
. ....+..++|+|||+.|+ ++..++.+++|++..
T Consensus 126 -------------------------------------~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~--- 160 (297)
T 2ojh_A 126 -------------------------------------T-----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI--- 160 (297)
T ss_dssp -------------------------------------C-----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET---
T ss_pred -------------------------------------e-----cCCCccceEECCCCCEEEEEECCCCceEEEEEEC---
Confidence 0 112367789999999887 667789999998642
Q ss_pred CCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcc-cccEEEeeCCCCCCe
Q 002196 811 NSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKTMTTFMPPPPAA 887 (954)
Q Consensus 811 ~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~-~~~~~~~~~~h~~~v 887 (954)
.++.... +.. +...+.+++|+|||++|++++ ++.++||++. .+.....+..|...+
T Consensus 161 -----------------~~~~~~~--~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 161 -----------------DSGVETR--LTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp -----------------TTCCEEE--CCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred -----------------CCCcceE--ccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 2222211 222 667889999999999887664 7889999886 566677888888889
Q ss_pred eEEEecCCCCceEEEEecC-----------ccEEEEeccccce--EEEecCCccceeEEEEecCCCeEEEecCCc
Q 002196 888 TFLAFHPQDNNIIAIGMED-----------SSIQIYNVRVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (954)
Q Consensus 888 ~~l~~sp~d~~~lasgs~d-----------g~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg 949 (954)
..++|+| +|++|++++.+ +.|++||+.+++. +..+.+|...+.+++|+|||++|++++.|.
T Consensus 220 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999999 99999888876 5699999998865 444557888999999999999998888764
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.8e-20 Score=201.79 Aligned_cols=274 Identities=12% Similarity=0.133 Sum_probs=192.7
Q ss_pred CeEEEEEEcCCeEEEEeCCC-CceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC-CEEEEEE
Q 002196 369 QILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK-HIVHLYT 446 (954)
Q Consensus 369 ~~ll~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d-g~i~iwd 446 (954)
++++++++.++.|++||+.. ++..... ...|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 44666668899999999963 3322111 12366789999999999999999887 9999999
Q ss_pred ee--CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC---CCceEEEeccCCCCeEEEeeeccCCc
Q 002196 447 YH--GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV---TGTKQYIFEGHESPVYSICPHHKENI 521 (954)
Q Consensus 447 ~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~ 521 (954)
++ +++. .....+..+. .+..++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|++++
T Consensus 67 ~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg-- 140 (343)
T 1ri6_A 67 IAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN-- 140 (343)
T ss_dssp ECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS--
T ss_pred ecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC--
Confidence 98 5442 2222344333 7899999999995 34555568999999994 34455555543 458888888765
Q ss_pred cEEEEEe-cCCeEEEEeCCC-CCcee----EeeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC--CCeE--E
Q 002196 522 QFIFSTA-TDGKIKAWLYDN-LGSRV----DYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAV--K 590 (954)
Q Consensus 522 ~~l~s~s-~dg~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~--~ 590 (954)
+++++++ .++.|.+||+.+ ..... .... .+..+..++|+|+++++++++. .+..+.+||+. +++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 5677766 899999999987 33221 2222 3447889999999998877652 24469999985 3433 3
Q ss_pred EEEecCC-----CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECC--C--CceeEEEecCCCCCCcceEEECCCCCEEEEE
Q 002196 591 RTYHGLG-----KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD--N--VNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (954)
Q Consensus 591 ~~~~~~~-----~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~ 660 (954)
..+.... ...+..++|+|++++++++. .++.|.+||+. + .+.+..+... . .+.+++|+|+|++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~-~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--T-QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--S-SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--C-ccceEEECCCCCEEEEe
Confidence 3333111 12466799999999887655 78999999998 3 3344444433 2 37899999999988888
Q ss_pred e-CCCcEEEEEcc
Q 002196 661 T-NDNGIKILANA 672 (954)
Q Consensus 661 ~-~dg~i~iwd~~ 672 (954)
+ .++.|.+|++.
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 7 57999999654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=3.3e-21 Score=208.58 Aligned_cols=303 Identities=9% Similarity=0.068 Sum_probs=205.4
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC--
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-- 597 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 597 (954)
.++++++.++.|.+||+.+.+....+..... .+..++|+|+|+.++++... +..|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998776666554332 47889999999988776532 3469999999999887776432
Q ss_pred --CCCeEEEEEeCCCCEEEEEE------------CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC
Q 002196 598 --KRSVGVVQFDTTKNRFLAAG------------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 598 --~~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d 663 (954)
...+..++|+|+++++++++ .++.|.+||+.+++.+..+... ..+.+++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11456789999999998886 5799999999999888877642 357889999999988877 6
Q ss_pred CcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccc
Q 002196 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKI 743 (954)
Q Consensus 664 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 743 (954)
+.|++||+.++ +....+..+... ....+.+++..++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~-------------------------------------------~~~~~s~dg~~l~ 189 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE-------------------------------------------AETYAQPDVLAVW 189 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT-------------------------------------------TTTBCCCBCCCCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC-------------------------------------------CCceeCCCccEEe
Confidence 89999999888 444444321100 0001122233222
Q ss_pred cccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCcc
Q 002196 744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQ 823 (954)
Q Consensus 744 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~ 823 (954)
.....+....+ +.......++..... .....+.+|
T Consensus 190 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~~v~~~-------------------- 224 (337)
T 1pby_B 190 NQHESSGVMAT------------------------PFYTARKDIDPADPT-AYRTGLLTM-------------------- 224 (337)
T ss_dssp CCCTTTTEEEE------------------------EEEEEBTTSCTTSGG-GEEEEEEEE--------------------
T ss_pred eeccCCCceee------------------------eeecccccccccccc-ccccceEEE--------------------
Confidence 22211110000 000000000000000 001134444
Q ss_pred ccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEE
Q 002196 824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903 (954)
Q Consensus 824 l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasg 903 (954)
|..+++.....+.. +...+.+++|+|||++++++ ++.|++||+.+++.+..+..+ ..+.+++|+| ||++|+++
T Consensus 225 --d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~ 297 (337)
T 1pby_B 225 --DLETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLG 297 (337)
T ss_dssp --ETTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEE
T ss_pred --eCCCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEE
Confidence 44444433211222 45677889999999999988 899999999999988887643 4678999999 89989889
Q ss_pred ecCccEEEEeccccceEEEecCCcc
Q 002196 904 MEDSSIQIYNVRVDEVKTKLKGHQK 928 (954)
Q Consensus 904 s~dg~i~iwd~~~~~~~~~~~~h~~ 928 (954)
+.++.|++||+.+++.+..+..+..
T Consensus 298 ~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 298 GALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEECGGG
T ss_pred cCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999999999999999888875543
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.9e-20 Score=199.55 Aligned_cols=297 Identities=10% Similarity=0.044 Sum_probs=204.5
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE-EEEEecCCCCC
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRS 600 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~ 600 (954)
..+++.+.++.|.+||..+++.......+...+ .++|+|+|+++++++.. +..|.+||..+++. ...+..+.. +
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~-~ 85 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF---CQTLVQIETQLEPPKVVAIQEGQS-S 85 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST---TCEEEEEECSSSSCEEEEEEECSS-C
T ss_pred EEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC---CCeEEEEECCCCceeEEecccCCC-C
Confidence 568888899999999999888777766666666 99999999988887642 34699999999987 666665543 4
Q ss_pred eEEEEEeCCCCEEEEEECCC---eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEE-EEeCCCc-EEEEEccCCC
Q 002196 601 VGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA-VSTNDNG-IKILANADGI 675 (954)
Q Consensus 601 i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~~dg~-i~iwd~~~~~ 675 (954)
..+++|+|++++++++..++ .|++||+.+++.+..+... ....+++|+|+|++++ +...++. |.+|++....
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 54499999999999555553 9999999999988887653 2458999999998554 4456688 9999987541
Q ss_pred eeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccc
Q 002196 676 RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWK 755 (954)
Q Consensus 676 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~ 755 (954)
.... ...
T Consensus 163 ~~~~-~~~------------------------------------------------------------------------ 169 (331)
T 3u4y_A 163 VLFD-TGQ------------------------------------------------------------------------ 169 (331)
T ss_dssp CEEE-EEE------------------------------------------------------------------------
T ss_pred cEee-cCC------------------------------------------------------------------------
Confidence 1110 000
Q ss_pred cccccCCCceeEEecCCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCccccc
Q 002196 756 LTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (954)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~ 834 (954)
..+ .....+..++|+|||+++++++ .++.+.+||+...... ..+.
T Consensus 170 ----------~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-------------------~~~~ 215 (331)
T 3u4y_A 170 ----------EFI-----SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-------------------TLLN 215 (331)
T ss_dssp ----------EEE-----CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-------------------EEEE
T ss_pred ----------ccc-----cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-------------------ceee
Confidence 000 0223467899999999776655 5789999986532110 0011
Q ss_pred ccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcccccE--EEeeCCC----CCC---eeEEEecCCCCceEEEE
Q 002196 835 NDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT--MTTFMPP----PPA---ATFLAFHPQDNNIIAIG 903 (954)
Q Consensus 835 ~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~--~~~~~~h----~~~---v~~l~~sp~d~~~lasg 903 (954)
. +. ....+..++|+|||++++++. ++.|.+||+.+++. +..+..+ ... +..++|+| ||++|+++
T Consensus 216 ~-~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~ 290 (331)
T 3u4y_A 216 A-VG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFIS 290 (331)
T ss_dssp E-EE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEE
T ss_pred e-cc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEe
Confidence 1 11 235677899999999877665 67899999998877 4433322 222 35689999 88877655
Q ss_pred e-cCccEEEEeccccceEEEecCCccceeEEEEecCC
Q 002196 904 M-EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939 (954)
Q Consensus 904 s-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg 939 (954)
+ .++.|.+||+.+.. +..+.+....-....+.||+
T Consensus 291 ~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 291 ANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp ETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred cCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence 5 56699999998755 33344443332234445554
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.2e-19 Score=197.69 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=192.5
Q ss_pred CCCCeEEEEEccCCCEEEEEEc-------CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYS-------KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i 489 (954)
....+..++|+|+|+++++++. ++.|.+||..+++... .+. ....+..++|+|+++. +++++..++.|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ---AIH-NDLKPFGATINNTTQT-LWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE---EEE-ESSCCCSEEEETTTTE-EEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE---EEe-cCCCcceEEECCCCCE-EEEEecCCCEE
Confidence 3467889999999999988874 5689999999987665 333 2345788999999996 46677778999
Q ss_pred EEEECCCCceEEEeccCCCC---------eEEEeeeccCCccEEEEEe--cCCeEEEEeCCCCCceeEeeCCCCceEEEE
Q 002196 490 KVWDAVTGTKQYIFEGHESP---------VYSICPHHKENIQFIFSTA--TDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 558 (954)
.+||..+++.+..+..+... +.+++|++++ +++++++ .++.|.+||..+.+....+......+..++
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT--NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT--TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC--CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 99999999988888765432 6788888766 5565554 478999999998777766665566688999
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC---CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeE
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL---GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLA 634 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 634 (954)
|+|+|++++++.. +..+.+||..+++.+..+... ....+..++|+|+++++++++ .++.|.+||..+++.+.
T Consensus 192 ~s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 192 LDSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp EETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ECCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 9999999998864 345999999999988877652 122577899999999887777 45999999999999988
Q ss_pred EEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEccCC
Q 002196 635 SIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADG 674 (954)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~ 674 (954)
.+.... ...++|+|+|+.++++. .++.|.+||..++
T Consensus 268 ~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 268 KVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 887542 26799999999665555 6899999999877
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=3.6e-21 Score=203.81 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=187.3
Q ss_pred EEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeC-Ccc
Q 002196 374 VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG-GDE 452 (954)
Q Consensus 374 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~-~~~ 452 (954)
.++.++.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34568899999999887653 345788999999999999999986 78999999998 765
Q ss_pred eeeeeeeecc-cCCEEEEEEecCCCceEEEEEc--CCC--eEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEE-E
Q 002196 453 LRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCG--EDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIF-S 526 (954)
Q Consensus 453 ~~~~~~~~~h-~~~v~~~~~s~~~~~~~l~s~~--~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s 526 (954)
.. ....| ...+.+++|+|+++ .+++++ .++ .|..|+..++. ...+..+. .+..++|++++ +.++ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33444 46789999999999 567766 334 45555555555 44454443 48888888766 5555 7
Q ss_pred EecCCeEEEEeCCCC-CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC-CCeEEEEEecCCCCCeEEE
Q 002196 527 TATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVV 604 (954)
Q Consensus 527 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~~ 604 (954)
++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++.. ++. +.+|++. .+.....+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR-TGQ--MQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT-TSS--CEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC-CCC--ccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 888999999997543 3344455556689999999999988877642 122 5666654 3444556665554 78889
Q ss_pred EEeCCCCEEEEEECC-----------CeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC
Q 002196 605 QFDTTKNRFLAAGDE-----------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (954)
Q Consensus 605 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg 664 (954)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 579999999887654443223355789999999999998887653
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2.9e-20 Score=201.12 Aligned_cols=278 Identities=9% Similarity=0.050 Sum_probs=205.3
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCC-CeEEEEEccCCCEEEEE-EcCCEEEEEEee
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-SVNRVMWSPDGTLFGVA-YSKHIVHLYTYH 448 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~-~~dg~i~iwd~~ 448 (954)
++++++.++.|.+||..+++.+.... .++.. .+.+++|+|||++++++ +.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 78899999999999999987765311 12222 47889999999877554 457899999999
Q ss_pred CCcceeeeeeeec---ccCCEEEEEEecCCCceEEEEEc------------CCCeEEEEECCCCceEEEeccCCCCeEEE
Q 002196 449 GGDELRNHLEIEA---HVGSVNDLAFSYPNKQLSVVTCG------------EDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (954)
Q Consensus 449 ~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 513 (954)
+++.+.... ... |...+.+++|+|+|+. +++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGKT--LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCCE--EEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 887654221 111 2236788999999984 55554 579999999999988877764 4557778
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCc-----------------
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE----------------- 576 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~----------------- 576 (954)
+|++++ ++++++ ++.|.+||+.+.+....+..... ...+.|+|+++.++..+.... .
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSG-VMATPFYTARKDIDPADP 214 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTT-EEEEEEEEEBTTSCTTSG
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCC-ceeeeeeccccccccccc
Confidence 888765 567666 68999999988776555544331 112378999987765542211 1
Q ss_pred ----eEEEEEeCCCCeEEE-EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 577 ----SYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 577 ----~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
..|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+... ..+.+++|+
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s 288 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---HSYYSVNVS 288 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred cccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC---CceeeEEEC
Confidence 147899999987652 2333333 67889999999999988 689999999999988887653 357899999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 002196 652 KEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
|+|++|++++.++.|.+||+.++ +....+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 99999999999999999999988 55555543
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=4.5e-20 Score=215.71 Aligned_cols=273 Identities=16% Similarity=0.061 Sum_probs=197.3
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCC-CCeEEEEEccCCCEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFG 434 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~ 434 (954)
..+|++++|+|||++++.++..||++.||++.+++... +..|. ..+.+++|||| +.++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEE
Confidence 34799999999999554444459999999987665443 34444 68999999999 7777
Q ss_pred EEEc---CCEEEEEEeeC--CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCC
Q 002196 435 VAYS---KHIVHLYTYHG--GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (954)
Q Consensus 435 s~~~---dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 509 (954)
+++. +....+|.+.. ..... .+..+ ..+...+|+||++.+++++++.++.. +||+.+++.......+.
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS--
T ss_pred EeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC--
Confidence 7765 45567776654 22222 22222 23446799999987556666655554 99999987665554333
Q ss_pred eEEEeeeccCCccEEEEEecC----CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC
Q 002196 510 VYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
.+++|+|++ +++++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.
T Consensus 153 -~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 677888766 789988877 78999999876654 45566678899999999999995443 334579999999
Q ss_pred CCeEEEEEecCCCCCeEEEE--------EeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 586 EGAVKRTYHGLGKRSVGVVQ--------FDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
+++.. .+..+.. .+..+. |+|||..+++++.+|.+++|++ ++... .. ...+.+++|+ +++++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~--~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP--QGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC--SSEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC--CCceEEEEec-CCEEE
Confidence 98877 6655544 555566 9999988889999999999999 65543 11 3467899999 99999
Q ss_pred EEEeCCCc---EEEEEcc
Q 002196 658 AVSTNDNG---IKILANA 672 (954)
Q Consensus 658 ~s~~~dg~---i~iwd~~ 672 (954)
++++.+.. +.+|+..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 88877643 5555543
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=225.50 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=193.4
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCC---CeEEEEEccCCCEEEEEE
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA---SVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l~s~~ 437 (954)
+++|+|||+ +++++ .||+|++||+.+++.... +.+|.. .|.+++|||||++|++++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 65554 699999999999876542 222322 489999999999999987
Q ss_pred c---------CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe-ccCC
Q 002196 438 S---------KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHE 507 (954)
Q Consensus 438 ~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~ 507 (954)
. ++.|++||+.+++.+... .+ ...+..++|||||+. |+.+. ++.|++||+.+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998752101 12 256889999999994 56554 789999999888765433 2333
Q ss_pred CCe-----------------EEEeeeccCCccEEEEEecCC----------------------------------eEEEE
Q 002196 508 SPV-----------------YSICPHHKENIQFIFSTATDG----------------------------------KIKAW 536 (954)
Q Consensus 508 ~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~iw 536 (954)
..| .+++|+|++ ++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 222 478888765 7888887652 78899
Q ss_pred eCCCCCce--eE------eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe----CCCCeEEEEE----ecCCCCC
Q 002196 537 LYDNLGSR--VD------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN----ESEGAVKRTY----HGLGKRS 600 (954)
Q Consensus 537 d~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 600 (954)
|+.+.... .. +..+...+..++|+||++.+++..........|.+|| ..+++....+ ..+.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876542 11 2235557899999999877666544344456799999 8877665444 24433 4
Q ss_pred eE-----EEEEeCCCCEEEE--EECCC--eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC-----CcE
Q 002196 601 VG-----VVQFDTTKNRFLA--AGDEF--MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGI 666 (954)
Q Consensus 601 i~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-----g~i 666 (954)
+. .+.|+|+|+.++. ...+| .|++||+.+++ ...+..+ ...+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 54 7889999986654 33444 68888887766 3444322 3346677767 77777666654 778
Q ss_pred EEEEccC
Q 002196 667 KILANAD 673 (954)
Q Consensus 667 ~iwd~~~ 673 (954)
++|.+..
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887653
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=5.7e-19 Score=191.97 Aligned_cols=293 Identities=9% Similarity=0.035 Sum_probs=197.9
Q ss_pred CccEEEEEecCCeEEEEeCCCCCceeEeeCCC-CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC-
Q 002196 520 NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG- 597 (954)
Q Consensus 520 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~- 597 (954)
++.++++++.++.|++||+.+.+....+..+. ..+..++|+|+|+.++++.. .+..|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccc
Confidence 34789999999999999999877666655433 25788999999998776652 24469999999999887776433
Q ss_pred ----CCCeEEEEEeCCCCEEEEEECC------------CeEEEEECCCCce---eEEEecCCCCCCcceEEECCCCCEEE
Q 002196 598 ----KRSVGVVQFDTTKNRFLAAGDE------------FMIKFWDMDNVNL---LASIDADGGLQASPCIRFNKEGILLA 658 (954)
Q Consensus 598 ----~~~i~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (954)
...+..++|+|+|+++++++.+ +.|.+||+.+++. +..... ...+.+++|+|+|+ ++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDGS-LY 162 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTSC-EE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC---CCcccceeECCCCc-EE
Confidence 2236788999999999998865 8999999988543 334433 23588999999999 55
Q ss_pred EEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCC
Q 002196 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (954)
Q Consensus 659 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (954)
+++ +.|.+||+.++ +....+........ ..
T Consensus 163 ~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~--------------------------------------------~~--- 192 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTG-KYTVALPLRNWNRK--------------------------------------------GY--- 192 (349)
T ss_dssp EES--SSEEEECTTTC-CEEEEECSTTCCCT--------------------------------------------TB---
T ss_pred Ecc--CcEEEEeCCCC-ceeccccccccCCc--------------------------------------------cc---
Confidence 554 34999999888 44444432110000 00
Q ss_pred CcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceE-----------EEeecCCeEEEeeccC
Q 002196 739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI-----------LALASNAVHKLWKWPR 807 (954)
Q Consensus 739 ~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-----------~~~~~dg~v~lw~~~~ 807 (954)
.....+.+|.... ... .......+++++++... ......+.+++|++.
T Consensus 193 -------~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 251 (349)
T 1jmx_B 193 -------SAPDVLYFWPHQS---PRH----------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA- 251 (349)
T ss_dssp -------CCCBCCCCCCCCC---TTC----------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-
T ss_pred -------cCccceeeecCCC---cce----------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-
Confidence 0001222333221 000 00123345666554321 122223444444321
Q ss_pred CCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEecc-CCCeEEEecCCeEEEEEcccccEEEeeCCCCCC
Q 002196 808 NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886 (954)
Q Consensus 808 ~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~sdg~i~iwd~~~~~~~~~~~~h~~~ 886 (954)
. +...+.+++|+| ||++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 252 -------------------------------~--~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~ 296 (349)
T 1jmx_B 252 -------------------------------D--LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHT 296 (349)
T ss_dssp -------------------------------E--CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSC
T ss_pred -------------------------------c--CCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCC
Confidence 1 345678899999 99999988 89999999999998888763 345
Q ss_pred eeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCC
Q 002196 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 926 (954)
Q Consensus 887 v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h 926 (954)
+.+++|+| |+++|++++.++.|++||+.+++.+..+..+
T Consensus 297 ~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 YYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 78999999 8888888888999999999999988887654
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.7e-19 Score=210.88 Aligned_cols=237 Identities=15% Similarity=0.161 Sum_probs=177.3
Q ss_pred CCCCeEEEEEccCCCEEEEEEc-CCEEEEEEeeCCcceeeeeeeeccc-CCEEEEEEecCCCceEEEEEcC---CCeEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGE---DRVIKV 491 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~---dg~i~i 491 (954)
+..+|.+++|+|||++||+++. ||+++||++++++.. .+..|. ..+..++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3568999999999999999887 999999999877643 344555 68999999998 4 5666664 455556
Q ss_pred EECCC---CceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 492 WDAVT---GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 492 wd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
|.+.. +... .+..+. .+...+|++++++..+++++.++ +.+||+.+++.......+. .+++|||||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3333 443322 34466888888755555555555 4599998776544443332 78999999999998
Q ss_pred EEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC--eEEEEECCCCceeEEEecCCCCCCcc
Q 002196 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGLQASP 646 (954)
Q Consensus 569 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 646 (954)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 8876554567999999988765 5555554 788999999999999888888 9999999998877 54433 44566
Q ss_pred eEE--------ECCCCCEEEEEeCCCcEEEEEc
Q 002196 647 CIR--------FNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 647 ~v~--------~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
.++ |+|||.++++++.|+.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 777 9999999999999999999998
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=4e-19 Score=197.61 Aligned_cols=259 Identities=12% Similarity=0.067 Sum_probs=176.9
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeee---eeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
...++.+++++++. ++++|+.+| |+||+......... ....+. .........|...|.+++|+|+|++
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV-------DKVQGLLVPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE-------ECCCCEEECCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCccccc-------ccCccccccCCCcccEEEEcCCCCE
Confidence 34689999999998 778888887 89988643211000 000000 0000011236678999999999999
Q ss_pred EE----EEEcCCEEEEEEeeCC--------cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 433 FG----VAYSKHIVHLYTYHGG--------DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 433 l~----s~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
|+ +|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|++.. +|++++.||+|++||++++..+
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS-MVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT-EEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC-EEEEEECCCeEEEEEcCCCcce
Confidence 99 7788999999999765 222233456789999999999998433 7999999999999999999877
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC-------CceEEEEECCCCCEEEEEEeCC
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-------HSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
....+|...|.+++|++++ ++|++|+.||.|++||++ ......+..+. ..+.+++|++++.++++.+...
T Consensus 186 ~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 7777899999999999875 799999999999999998 44443333221 2789999999888776654321
Q ss_pred ---CCceEEEEEeCCCCe-----EEEEEec------CCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEEC
Q 002196 574 ---EGESYLVEWNESEGA-----VKRTYHG------LGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDM 627 (954)
Q Consensus 574 ---~~~~~i~iwd~~~~~-----~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~ 627 (954)
.....+++|+++... ....+.. ....+...+..-++.+++++++ ..+.|.++..
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112358899987642 2222211 1111222333447777777766 4445666654
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=221.81 Aligned_cols=322 Identities=8% Similarity=0.051 Sum_probs=215.1
Q ss_pred eeeeCCCCCcceeecCCC-------CCcceEEEecCCC----CeeEEEEcCCCCeEEEEEEc---------CCeEEEEeC
Q 002196 327 PVAYTPQSLGQSSYSTDD-------LPKTVVMTLNQGS----AVKSMDFHPVQQILLVVGTN---------MGDVMLWEV 386 (954)
Q Consensus 327 ~~~~s~~g~~~~~~~~~~-------~~~~~~~~~~h~~----~V~~~~~sp~g~~ll~~g~~---------dg~i~iwd~ 386 (954)
.++|+|+|+++++.. +. ..+.....+.+.. .|.+++|||||++ |++++. ++.|++||+
T Consensus 20 ~~~~s~dg~~~~~~~-d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSA-DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECT-TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcC-CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEEC
Confidence 357888886655442 22 1334455555332 4999999999995 555544 689999999
Q ss_pred CCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCE
Q 002196 387 GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466 (954)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 466 (954)
.+++.+.. ......+.+++|||||++||++. ++.|++|++.+++..+. ...++...|
T Consensus 98 ~~g~~~~~--------------------~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v 154 (719)
T 1z68_A 98 SNGEFVRG--------------------NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKI 154 (719)
T ss_dssp TTTEECCS--------------------SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTE
T ss_pred CCCccccc--------------------eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCe
Confidence 99875210 00125688999999999999985 78999999988765431 112333222
Q ss_pred -----------------EEEEEecCCCceEEEEEcCCC----------------------------------eEEEEECC
Q 002196 467 -----------------NDLAFSYPNKQLSVVTCGEDR----------------------------------VIKVWDAV 495 (954)
Q Consensus 467 -----------------~~~~~s~~~~~~~l~s~~~dg----------------------------------~i~iwd~~ 495 (954)
.+++|||||+ .|++++.|. .|++||+.
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred EcccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 4899999999 566666442 88999999
Q ss_pred CCceE---E-----EeccCCCCeEEEeeeccCCccEEEEEecC----CeEEEEe----CCCCCceeEe----eCCCCceE
Q 002196 496 TGTKQ---Y-----IFEGHESPVYSICPHHKENIQFIFSTATD----GKIKAWL----YDNLGSRVDY----DAPGHSST 555 (954)
Q Consensus 496 ~~~~~---~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~ 555 (954)
+++.. . .+.+|...+..++|+|++ .++++.... ..|.+|| ..+++..... ..+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG 310 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEc
Confidence 88753 1 234688889999999873 677664432 2488888 6665444333 34455555
Q ss_pred -----EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEE
Q 002196 556 -----MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFW 625 (954)
Q Consensus 556 -----~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw 625 (954)
.+.|+|||+.++....+.++...|.+||+.+++ ...+..+.. .+..+.++ +++.++..+.+ +..++|
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 789999999887755555667789999988776 344444333 57777777 88888877754 778888
Q ss_pred ECCC--Cc-eeEEEec--CCCCCCcceEEECCCCCEEEEE-eCC--CcEEEEEccCCCeeEEEe
Q 002196 626 DMDN--VN-LLASIDA--DGGLQASPCIRFNKEGILLAVS-TND--NGIKILANADGIRLLRTV 681 (954)
Q Consensus 626 d~~~--~~-~~~~~~~--~~~~~~v~~v~~s~~~~~l~s~-~~d--g~i~iwd~~~~~~~~~~~ 681 (954)
.+.. +. ....+.. ..+...+..+.|+|++++++.. +.. ..+.+||+.++ +..+.+
T Consensus 388 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g-~~~~~~ 450 (719)
T 1z68_A 388 RISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD-QEIKIL 450 (719)
T ss_dssp EEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC-CEEEEE
T ss_pred EEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC-CEEEEe
Confidence 7654 32 1233321 1123456789999999877654 333 46889998877 444444
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=8.6e-18 Score=182.44 Aligned_cols=245 Identities=10% Similarity=0.098 Sum_probs=170.8
Q ss_pred CCCCeEEEEEccCCCEEEEEEc---CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEc-CCCeEEEE
Q 002196 417 YTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVW 492 (954)
Q Consensus 417 h~~~V~~l~~spdg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~-~dg~i~iw 492 (954)
+...+..++|+|||+ |++++. ++.|.+|++.++.. .....+..+...+..++|+|||+. |++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~--l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQL--VYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTE--EEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCE--EEEEeCCCCEEEEE
Confidence 456778899999999 555544 68999999987653 233344567788999999999994 55555 78999999
Q ss_pred ECC-CCc--eEEEecc---------CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCcee---EeeC-CCCceEE
Q 002196 493 DAV-TGT--KQYIFEG---------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---DYDA-PGHSSTM 556 (954)
Q Consensus 493 d~~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~-~~~~v~~ 556 (954)
|+. ++. .+..+.. +...+.+++|+|++ +++++...++.|.+|++....... .... .+..+..
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC--cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 986 333 2333321 12347889998766 566777778999999998333222 1222 3346788
Q ss_pred EEECCCCCEEEEEEeCCCCceEEEEEeCC--CCeE--EEEEecCCC-----CCeEEEEEeCCCCEEEE-EECCCeEEEEE
Q 002196 557 MAYSADGARLFSCGTNKEGESYLVEWNES--EGAV--KRTYHGLGK-----RSVGVVQFDTTKNRFLA-AGDEFMIKFWD 626 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~~-----~~i~~~~~~~~~~~l~~-~~~dg~i~iwd 626 (954)
++|+|||++++++... +..+.+|++. +++. +..+..... ..+..++|+|+|+++++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~~---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGEL---SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeCC---CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 9999999988876532 3458888876 3543 233333221 24788999999998754 55789999999
Q ss_pred CCCC---ceeEEEecCCCCCCcceEEECCCCCEEEEEeCC-CcEEEEEcc
Q 002196 627 MDNV---NLLASIDADGGLQASPCIRFNKEGILLAVSTND-NGIKILANA 672 (954)
Q Consensus 627 ~~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d-g~i~iwd~~ 672 (954)
+... +.+..+..+ ...+..++|+|||++|++++.+ +.|.+|++.
T Consensus 269 ~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9732 344444433 3357899999999988888764 899999553
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=1.5e-18 Score=208.37 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=183.5
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCC-----CCeEEEEEccCCCE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-----ASVNRVMWSPDGTL 432 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~ 432 (954)
...+++|+|||+ +++++ ||+|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999997 67775 99999999999976432 23333 23355899999999
Q ss_pred EEEEEcC---------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE-
Q 002196 433 FGVAYSK---------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI- 502 (954)
Q Consensus 433 l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~- 502 (954)
|++++.+ +.+.+||+.+++.. .+..|.+.+...+|||||+. |+.+ .|+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEEc
Confidence 9999876 56679999998754 36667888999999999995 5555 568999999988875542
Q ss_pred eccCCCCe-----------------EEEeeeccCCccEEEEEecCCe-EEEEeCCCCCceeEeeCCCCceEEEEECCCCC
Q 002196 503 FEGHESPV-----------------YSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA 564 (954)
Q Consensus 503 ~~~~~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 564 (954)
..++...+ ..+.|+|++ +.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333222 236777665 78888776544 8888764221110 1223556677777764
Q ss_pred EEEEEEeCCCCceEEEEEeCCC---Ce--EEEEEec------CCCCCeEEEEEeCCCCEEEEEE----CCCeEEEEECCC
Q 002196 565 RLFSCGTNKEGESYLVEWNESE---GA--VKRTYHG------LGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDN 629 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 629 (954)
.. ....|++||+.+ +. ....+.. +.. .+..++|+|||+.++... .+..|++||+.+
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 31 233599999998 73 2233332 333 788999999998776654 234799999998
Q ss_pred Cc----ee--EEEecCCCCCCc-----ceEEECCCCCEEE-EEeC-CC--cEEEEEccCC
Q 002196 630 VN----LL--ASIDADGGLQAS-----PCIRFNKEGILLA-VSTN-DN--GIKILANADG 674 (954)
Q Consensus 630 ~~----~~--~~~~~~~~~~~v-----~~v~~s~~~~~l~-s~~~-dg--~i~iwd~~~~ 674 (954)
++ +. ..+....+...+ ..++|+|||+.++ ..+. +| .|++|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 11 112001122233 3789999999877 6654 33 5666666544
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=3.1e-18 Score=185.93 Aligned_cols=272 Identities=12% Similarity=0.090 Sum_probs=186.3
Q ss_pred cceeecCCCCCcce--EEEecCCCCeeEEEEcCCCCeEEEEEEc--CCeEEEEeCCCCceeeeeeeEEEeccCCCccccc
Q 002196 336 GQSSYSTDDLPKTV--VMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQA 411 (954)
Q Consensus 336 ~~~~~~~~~~~~~~--~~~~~h~~~V~~~~~sp~g~~ll~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (954)
.+..+..|...+.. +....+...+..++|+|||+ +++++.. ++.|.+|++.+++......
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~--------------- 80 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT--------------- 80 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE---------------
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee---------------
Confidence 34445444433333 33455677889999999998 7666654 7899999997776432111
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEEE-cCCEEEEEEeeCCcceeeeeeeec---------ccCCEEEEEEecCCCceEEE
Q 002196 412 SLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEA---------HVGSVNDLAFSYPNKQLSVV 481 (954)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---------h~~~v~~~~~s~~~~~~~l~ 481 (954)
+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|+|+ +++
T Consensus 81 --~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v 156 (347)
T 3hfq_A 81 --VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAV 156 (347)
T ss_dssp --EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEE
T ss_pred --eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEE
Confidence 233567889999999999999888 679999999964332332222221 123488999999999 688
Q ss_pred EEcCCCeEEEEECC-CCceEE--EeccC-CCCeEEEeeeccCCccEEE-EEecCCeEEEEeCCC--CCce--eEeeCCC-
Q 002196 482 TCGEDRVIKVWDAV-TGTKQY--IFEGH-ESPVYSICPHHKENIQFIF-STATDGKIKAWLYDN--LGSR--VDYDAPG- 551 (954)
Q Consensus 482 s~~~dg~i~iwd~~-~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~--~~~~--~~~~~~~- 551 (954)
+...++.|.+||+. +++... .+..+ ...+..++|+|++ ++++ +...++.|.+|+++. +... .......
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 234 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA 234 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence 88889999999998 554332 22222 3357788988766 5454 456789999999875 2211 1122111
Q ss_pred -----CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC---CeEEEEEecCCCCCeEEEEEeCCCCEEEEEEC-CCeE
Q 002196 552 -----HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE---GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EFMI 622 (954)
Q Consensus 552 -----~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i 622 (954)
..+..++|+|||++|+++... +..|.+||+.. .+.+..+..+.. .+..++|+|+|++|++++. ++.|
T Consensus 235 ~~~~~~~~~~i~~spdG~~l~v~~~~---~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v 310 (347)
T 3hfq_A 235 DYTAHNGAAAIRLSHDGHFLYVSNRG---YNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNA 310 (347)
T ss_dssp TCCSCCEEEEEEECTTSCEEEEEEET---TTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCCCcceeEEECCCCCEEEEEeCC---CCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcE
Confidence 358889999999988766532 34599999872 245555555443 6788999999999988875 5899
Q ss_pred EEE--ECCCCcee
Q 002196 623 KFW--DMDNVNLL 633 (954)
Q Consensus 623 ~iw--d~~~~~~~ 633 (954)
.+| |..+++..
T Consensus 311 ~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 311 TLYARDLTSGKLS 323 (347)
T ss_dssp EEEEECTTTCCEE
T ss_pred EEEEEeCCCCeEE
Confidence 999 55566654
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=2.8e-18 Score=189.66 Aligned_cols=298 Identities=10% Similarity=0.011 Sum_probs=196.4
Q ss_pred ceEEEec-CCCCeeE-----EEEcCCCCeEEEEEEcCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCC
Q 002196 348 TVVMTLN-QGSAVKS-----MDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA 419 (954)
Q Consensus 348 ~~~~~~~-h~~~V~~-----~~~sp~g~~ll~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 419 (954)
..+..+. |...+.. .+|||||+++++++..+| .|.+||+.+++.... ..++..
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~~~ 81 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGRGD 81 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSSCB
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCCCC
Confidence 3444454 4545555 899999996655554467 488899988876542 344555
Q ss_pred CeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEE--EecCCCceEEEE---------------
Q 002196 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVT--------------- 482 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~~~l~s--------------- 482 (954)
.+..++|||||+.|++++.++.|++||+.+++... ....+...+.... ++|+++. ++.
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~~--l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCTK--LVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSE--EEEEEEEGGGCCCCCSHH
T ss_pred CccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCCe--eccccccCcccccccccc
Confidence 56678899999999999999999999999987544 3344555454444 4889983 442
Q ss_pred -------EcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec-cCCccEEEEEecC------CeEEEEeCCCCCceeEee
Q 002196 483 -------CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH-KENIQFIFSTATD------GKIKAWLYDNLGSRVDYD 548 (954)
Q Consensus 483 -------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~ 548 (954)
.+.+..|.+||+.+++... +..+...+..+.|+| ++ +.|+.++.+ ..|.++|...........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCC
T ss_pred hhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeee
Confidence 2245789999999987544 444667788999988 65 677776653 367788876544333322
Q ss_pred CCC-CceEEEEECCCCCEEEEEEeCC-CCceEEEEEeCCCCeEEE--EEecCCC--CCeEEEEEeCCCCEEEEE------
Q 002196 549 APG-HSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKR--TYHGLGK--RSVGVVQFDTTKNRFLAA------ 616 (954)
Q Consensus 549 ~~~-~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~--~~~~~~~--~~i~~~~~~~~~~~l~~~------ 616 (954)
... ..+..+.|+|||+.|+..+... .....|++||+.+++... .+.++.. .......|+|+|+.|+..
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 313 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG 313 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---------
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence 222 2577889999999887665432 223459999999987433 3322100 001123699999888754
Q ss_pred ---ECCCeEEEEECCCCceeEEEecCCCC--------CCcceEEECCCCCEEEEEeC-CCcEEEEEcc
Q 002196 617 ---GDEFMIKFWDMDNVNLLASIDADGGL--------QASPCIRFNKEGILLAVSTN-DNGIKILANA 672 (954)
Q Consensus 617 ---~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~s~~~-dg~i~iwd~~ 672 (954)
..+..|++||+.+++........... ..+.+++|+|||+.|+..+. +|...+|.+.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 314 YKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ---CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45668999999987764433322100 04678999999998877664 6777777553
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.3e-17 Score=182.08 Aligned_cols=306 Identities=12% Similarity=0.154 Sum_probs=194.6
Q ss_pred cEEEEEe----cCCeEEEEeCCC--CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC--CeE--EE
Q 002196 522 QFIFSTA----TDGKIKAWLYDN--LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--GAV--KR 591 (954)
Q Consensus 522 ~~l~s~s----~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~ 591 (954)
.+++.|+ .++.|.+|+++. +........+...+..++|+|+|++|++++.++...+.+.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 4566664 356899997754 3332222225557778999999999999887533345688887654 543 33
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeE----EEecCC--------CCCCcceEEECCCCCEEE
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLA----SIDADG--------GLQASPCIRFNKEGILLA 658 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~~~~~~--------~~~~v~~v~~s~~~~~l~ 658 (954)
....+.. ....+++ +++++++++ .++.|.+|++.....+. .....+ ....+.+++|+|+|++++
T Consensus 94 ~~~~~~~-~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 94 TQKTMGA-DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEECSSS-CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred EeccCCC-CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 3333333 5666777 788888877 68899999997543221 111111 112346799999999766
Q ss_pred EEe-CCCcEEEEEccCCCe----e-EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCC
Q 002196 659 VST-NDNGIKILANADGIR----L-LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (954)
Q Consensus 659 s~~-~dg~i~iwd~~~~~~----~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (954)
+++ .++.|++|++..... . +... +
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~-~------------------------------------------------- 200 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTK-G------------------------------------------------- 200 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEE-E-------------------------------------------------
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeec-c-------------------------------------------------
Confidence 555 478999999875421 0 0000 0
Q ss_pred CCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEee-cCCeEEEeeccCCCCC
Q 002196 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERN 811 (954)
Q Consensus 733 ~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~dg~v~lw~~~~~~~~ 811 (954)
. ...... .....+..++|+|||+++++++ .++.|.+|++..+...
T Consensus 201 -----------------~--------------~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 201 -----------------T--------------PEAFKV---APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp -----------------E--------------EEEEEC---CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred -----------------c--------------ccceec---CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence 0 000000 0233467899999999888877 5899999987632110
Q ss_pred CCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-C--CeEEEEEcc--ccc--EEEeeCCCC
Q 002196 812 STGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G--GKISLFNMM--TFK--TMTTFMPPP 884 (954)
Q Consensus 812 ~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-d--g~i~iwd~~--~~~--~~~~~~~h~ 884 (954)
.. ..+. .... +......++|||||++|+++. + +.|.+|++. +++ .+..+.. .
T Consensus 247 ~~-----------------~~~~-~~~~--~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 247 EI-----------------QTVA-ADTV--NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp EE-----------------EEEE-SCSS--CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred Ee-----------------EEEe-cCCC--CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 00 0000 0111 344568999999999987765 4 789999985 444 4445554 5
Q ss_pred CCeeEEEecCCCCceEEEEe-cCccEEEEe--ccccceEEEe-cCCccceeEEEEe
Q 002196 885 PAATFLAFHPQDNNIIAIGM-EDSSIQIYN--VRVDEVKTKL-KGHQKRITGLAFS 936 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs-~dg~i~iwd--~~~~~~~~~~-~~h~~~V~~l~~s 936 (954)
..+.+++|+| ||++|++++ .++.|.+|+ ..+|++.... ..+...+.|+.|.
T Consensus 306 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 306 IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 5689999999 899888887 678999965 4577765544 2355678999987
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.4e-17 Score=199.87 Aligned_cols=235 Identities=11% Similarity=-0.022 Sum_probs=158.2
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCC-----EEEEEEecCCCceEEEEEcCC------
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS-----VNDLAFSYPNKQLSVVTCGED------ 486 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-----v~~~~~s~~~~~~~l~s~~~d------ 486 (954)
.....+++|+|||++++++ |+.|++||+.+++... .+.+|... ...++|||||+ .|+.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Spdg~--~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV---FLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE---EECTTTTTTCCSCCCEEEECTTSS--EEEEEEEEEECSSS
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEE---EEechhhhhhcccccceEECCCCC--EEEEEECCeeeEEE
Confidence 3456689999999999886 9999999999987644 45555532 34589999999 46666665
Q ss_pred ---CeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-eCCCCce--------
Q 002196 487 ---RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSS-------- 554 (954)
Q Consensus 487 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v-------- 554 (954)
+.+.+||+.+++.. .+..|...+...+|+|++ +.|+.+ .++.|++|++.++...... ..+...+
T Consensus 89 ~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG--~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVG--HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (740)
T ss_dssp CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSST--TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCC--CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccccc
Confidence 56779999998754 466678889999998876 677777 4689999999876644321 1111112
Q ss_pred ---------EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 555 ---------TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 555 ---------~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
..+.|||||+.|+....+... +.+|++...... ..+ ...+..+.+.+.|.. .....|++|
T Consensus 165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~---v~~~~~~~~~~~---~~~-~~~~~~~~yp~~G~~----~~~~~l~v~ 233 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTE---VPLIEYSFYSDE---SLQ-YPKTVRVPYPKAGAV----NPTVKFFVV 233 (740)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEEEEEECTT---CCEEEEEECCST---TCS-SCEEEEEECCBTTSC----CCEEEEEEE
T ss_pred ccchhcCCCcceEECCCCCEEEEEEEcccC---CceEEEEeecCC---CCC-CCcceeecCCCCcCc----CCeeEEEEE
Confidence 348999999999998765442 455543210000 011 113455666665532 123378999
Q ss_pred ECCC---Cc--eeEEEecC----CCCCCcceEEECCCCCEEEEEeC----CCcEEEEEccCC
Q 002196 626 DMDN---VN--LLASIDAD----GGLQASPCIRFNKEGILLAVSTN----DNGIKILANADG 674 (954)
Q Consensus 626 d~~~---~~--~~~~~~~~----~~~~~v~~v~~s~~~~~l~s~~~----dg~i~iwd~~~~ 674 (954)
|+.+ ++ ....+... .+...+..++|+|||+.++.... +..|++||+.++
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 9998 73 22333321 13456889999999997665533 337999998877
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=5.9e-18 Score=183.91 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=187.7
Q ss_pred eeCCCCCcceeecCCC-------CCcceEEEecCCC--CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEE
Q 002196 329 AYTPQSLGQSSYSTDD-------LPKTVVMTLNQGS--AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKV 399 (954)
Q Consensus 329 ~~s~~g~~~~~~~~~~-------~~~~~~~~~~h~~--~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~ 399 (954)
++++++..+++...+. ..++.+..+.... .+..++|+|+|+.+++++..++.|.+||+.+++......
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~--- 82 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN--- 82 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE---
Confidence 4555555544443332 2345666666444 789999999999777777788999999999987654311
Q ss_pred EeccCCCccccccccCCC-----CCCeEEEEEccCCCEEEEEEcC------------CEEEEEEeeCCcceeeeeeeecc
Q 002196 400 WELGACSMPLQASLSSDY-----TASVNRVMWSPDGTLFGVAYSK------------HIVHLYTYHGGDELRNHLEIEAH 462 (954)
Q Consensus 400 ~~~~~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~h 462 (954)
..+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.......+. +
T Consensus 83 ---------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 83 ---------------LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp ---------------SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred ---------------cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 011 2347889999999999999866 899999999866544332333 4
Q ss_pred cCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC------------------------CeEEEeeecc
Q 002196 463 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES------------------------PVYSICPHHK 518 (954)
Q Consensus 463 ~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~ 518 (954)
...+.+++|+|+|+ +++ ++. .|.+||+.+++.+..+..+.. ....+++.++
T Consensus 147 ~~~~~~~~~s~dg~--l~~-~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 147 PRQVYLMRAADDGS--LYV-AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp CSSCCCEEECTTSC--EEE-ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred CCcccceeECCCCc--EEE-ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 44689999999998 344 443 499999999998877754320 1222333322
Q ss_pred CCc---------cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 519 ENI---------QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 519 ~~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
+.. .++.....++.+++|++. .....+..++|+| +|++++++ + ..|.+||+.+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~--~----~~v~~~d~~~~~ 286 (349)
T 1jmx_B 222 DKQDPATADLLYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSPKDPNQIYGV--L----NRLAKYDLKQRK 286 (349)
T ss_dssp -----CCCEEEEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECSSCTTEEEEE--E----SEEEEEETTTTE
T ss_pred CcCCccccccceeEEEEeccCCcEEecccc---------cCCCcceeeEecCCCCCEEEEE--c----CeEEEEECccCe
Confidence 100 111122233444444432 2455788999999 99999887 2 249999999999
Q ss_pred EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 589 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
.+..+.... .+..++|+|++++|++++.++.|++||..+++.+..+...
T Consensus 287 ~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 287 LIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 888876543 5678999999999988888999999999999999888765
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=2.3e-17 Score=179.01 Aligned_cols=310 Identities=8% Similarity=0.076 Sum_probs=209.6
Q ss_pred cEEEEEe------cCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEe------CCCCceEEEEEeCCCCeE
Q 002196 522 QFIFSTA------TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT------NKEGESYLVEWNESEGAV 589 (954)
Q Consensus 522 ~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~~~~~i~iwd~~~~~~ 589 (954)
.+++... .|+.|.+||..+.+....+.....+ .++|+|||++++++.. .+..+..|.+||..+++.
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 5555543 3779999999887766665544333 8999999999999863 122245799999999998
Q ss_pred EEEEecCC-----CCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCceeEE-EecCCCCCCcceEEECCCC-CEEEEE
Q 002196 590 KRTYHGLG-----KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNKEG-ILLAVS 660 (954)
Q Consensus 590 ~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~s~ 660 (954)
+..+.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA----GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT----TEEEEEECTTSSSEEEEE
T ss_pred EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC----CcceeEEcCCCCeeEEEE
Confidence 88876431 124567899999999999873 68999999999988877 5532 12335677765 677888
Q ss_pred eCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCc
Q 002196 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (954)
Q Consensus 661 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (954)
+.||.+.+|+.....+...... .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~--~------------------------------------------------------- 192 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSR--S------------------------------------------------------- 192 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEE--C-------------------------------------------------------
T ss_pred CCCCcEEEEEECCCCcEeeecc--c-------------------------------------------------------
Confidence 9999999998865212221110 0
Q ss_pred ccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCC
Q 002196 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 820 (954)
Q Consensus 741 ~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~ 820 (954)
..+|+... .+ ..+.+++++..++..+.++.+.++|+......
T Consensus 193 ----------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~--------- 234 (361)
T 2oiz_A 193 ----------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK--------- 234 (361)
T ss_dssp ----------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE---------
T ss_pred ----------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce---------
Confidence 01111110 00 01122556666666667778888776422110
Q ss_pred CccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec------------CCeEEEEEcccccEEEeeCCCCCCee
Q 002196 821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMTTFMPPPPAAT 888 (954)
Q Consensus 821 ~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~~~~h~~~v~ 888 (954)
.+..|+........... .......++|+||++.++++. .++|.+||+.+++.+.++..+. +.
T Consensus 235 ~~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~ 308 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--AL 308 (361)
T ss_dssp EEEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CC
T ss_pred ecccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--ee
Confidence 00011111110000000 011222478999988877652 2479999999999999998877 99
Q ss_pred EEEecCCCCceEEEEecCccEEEEecccc--ceEEEecCCccceeEEEEecCCC
Q 002196 889 FLAFHPQDNNIIAIGMEDSSIQIYNVRVD--EVKTKLKGHQKRITGLAFSNTLN 940 (954)
Q Consensus 889 ~l~~sp~d~~~lasgs~dg~i~iwd~~~~--~~~~~~~~h~~~V~~l~~s~dg~ 940 (954)
+++|+| ||++|++++. ++|.+||..++ +.+.++..+......++++|||+
T Consensus 309 ~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 309 SMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 8999988886 99999999999 99999877777889999999986
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4.6e-18 Score=187.86 Aligned_cols=254 Identities=10% Similarity=-0.023 Sum_probs=174.0
Q ss_pred cCCCCCCeEE-----EEEccCCCEEEEEEc-CC--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC
Q 002196 414 SSDYTASVNR-----VMWSPDGTLFGVAYS-KH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (954)
Q Consensus 414 ~~~h~~~V~~-----l~~spdg~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~ 485 (954)
+..|...... .+|||||++|++++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4556555555 889999999999987 66 48888988877544 3345555555788999999 5888888
Q ss_pred CCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEE----------------------ecCCeEEEEeCCCCCc
Q 002196 486 DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST----------------------ATDGKIKAWLYDNLGS 543 (954)
Q Consensus 486 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------------------s~dg~i~iwd~~~~~~ 543 (954)
++.|++||+.+++....+..+...+....+..+.++.+++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 899999999999887777766666655555444555676643 2346799999988754
Q ss_pred eeEeeCCCCceEEEEECC-CCCEEEEEEeCCC--CceEEEEEeCCCCeEEEEEecCCC-CCeEEEEEeCCCCEEEEEEC-
Q 002196 544 RVDYDAPGHSSTMMAYSA-DGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGK-RSVGVVQFDTTKNRFLAAGD- 618 (954)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~- 618 (954)
... ..+...+..+.|+| ||+.|+.+..... ....|.++|...+... .+..+.. ..+....|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 433 33455788999999 9999988775321 1335888888765543 3333332 24777899999998766542
Q ss_pred C----CeEEEEECCCCceeEEEecCCCC---CCcceEEECCCCCEEEEE---------eCCCcEEEEEccCC
Q 002196 619 E----FMIKFWDMDNVNLLASIDADGGL---QASPCIRFNKEGILLAVS---------TNDNGIKILANADG 674 (954)
Q Consensus 619 d----g~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~s~---------~~dg~i~iwd~~~~ 674 (954)
+ +.|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2 24999999998754433222100 012345799999887754 44568999998876
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=7.7e-17 Score=175.96 Aligned_cols=272 Identities=13% Similarity=0.138 Sum_probs=184.2
Q ss_pred EEEEEEc----CCeEEEEeC--CCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC----C
Q 002196 371 LLVVGTN----MGDVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----H 440 (954)
Q Consensus 371 ll~~g~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d----g 440 (954)
.+++|+. ++.|.+|++ .+++..... .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 4556643 467888876 445443210 11 56778889999999999999886 7
Q ss_pred EEEEEEeeCC-cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE------ecc--------
Q 002196 441 IVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI------FEG-------- 505 (954)
Q Consensus 441 ~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~-------- 505 (954)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|++.....+.. ..+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999863 223333344445567778888 7774 355555789999999875433221 111
Q ss_pred CCCCeEEEeeeccCCccEEEEE-ecCCeEEEEeCCCCCc------e-------eEeeCCCCceEEEEECCCCCEEEEEEe
Q 002196 506 HESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLGS------R-------VDYDAPGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 506 ~~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~------~-------~~~~~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
+...+.+++|+|++ ++++++ ..++.|.+|+++.... . .........+..++|+|+|++++++..
T Consensus 153 ~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 12335778888766 555554 4589999999876542 1 122233456889999999999888763
Q ss_pred CCCCceEEEEEeCCCCeE--EEEEecCC--CCCeEEEEEeCCCCEEEEEEC--CCeEEEEECC--CCc--eeEEEecCCC
Q 002196 572 NKEGESYLVEWNESEGAV--KRTYHGLG--KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMD--NVN--LLASIDADGG 641 (954)
Q Consensus 572 ~~~~~~~i~iwd~~~~~~--~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 641 (954)
.+..|.+||+.++.. +..+.... ......++|+|+|++|+++.. ++.|.+|++. +++ .+..+..
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--- 304 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--- 304 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---
Confidence 244699999987754 33333221 124678999999999977775 4899999986 444 3333433
Q ss_pred CCCcceEEECCCCCEEEEEe-CCCcEEEEEcc
Q 002196 642 LQASPCIRFNKEGILLAVST-NDNGIKILANA 672 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~ 672 (954)
...+.+++|+|+|++|++++ .++.|.+|++.
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 23578999999999888887 67899997654
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=1.5e-17 Score=184.84 Aligned_cols=231 Identities=10% Similarity=0.055 Sum_probs=155.3
Q ss_pred eeeeeeCCCCCcceeecCCCCC----------------------cceEEEecCCCCeeEEEEcCCCCeEEE---EEEcCC
Q 002196 325 ILPVAYTPQSLGQSSYSTDDLP----------------------KTVVMTLNQGSAVKSMDFHPVQQILLV---VGTNMG 379 (954)
Q Consensus 325 i~~~~~s~~g~~~~~~~~~~~~----------------------~~~~~~~~h~~~V~~~~~sp~g~~ll~---~g~~dg 379 (954)
+..+++++++.+++....+... ......+.+...|++++|+|+|+++++ +|+.|+
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 4456777777776666544310 011123456778999999999995544 788899
Q ss_pred eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeee
Q 002196 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLE 458 (954)
Q Consensus 380 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 458 (954)
.|+|||+.++....... .........+.+|...|.+++|+|+ +++|++++.||+|++||+.++.... .
T Consensus 119 ~v~iwd~~~~~~~~~~~--------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~---~ 187 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQ--------KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC---A 187 (434)
T ss_dssp EEEEEEHHHHHCTTCSS--------CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE---E
T ss_pred eEEEEEccccccCCcCC--------cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee---e
Confidence 99999987651000000 0000011236789999999999997 8999999999999999999875433 4
Q ss_pred eecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC-------CCeEEEeeeccCCccEEEE-EecC
Q 002196 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-------SPVYSICPHHKENIQFIFS-TATD 530 (954)
Q Consensus 459 ~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~s-~s~d 530 (954)
..+|...|.+++|+|+|+ +|++|+.||.|++||++ ++....+..|. ..|.+++|+++. .++++ .+.+
T Consensus 188 ~~~~~~~v~~v~wspdg~--~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~--~~l~~~~~~d 262 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGK--QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY--VFAIVYAAAD 262 (434)
T ss_dssp EECGGGCEEEEEECTTSS--CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT--EEEEEEEETT
T ss_pred ccCCCCceeEEEEcCCCC--EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc--eEEEEEccCC
Confidence 567899999999999999 69999999999999988 66666665443 378888887644 45543 3344
Q ss_pred C------eEEEEeCCCCCce--e---Eee-------CCCCceEEEEECCCCCEEEEEEe
Q 002196 531 G------KIKAWLYDNLGSR--V---DYD-------APGHSSTMMAYSADGARLFSCGT 571 (954)
Q Consensus 531 g------~i~iwd~~~~~~~--~---~~~-------~~~~~v~~~~~s~~g~~l~~~~~ 571 (954)
| .+++|+++..+.. . .+. ....+...+.+-++.+++++++.
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 3 3899999865321 1 111 11112233444477777777664
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=5.3e-17 Score=177.24 Aligned_cols=247 Identities=9% Similarity=0.067 Sum_probs=171.9
Q ss_pred CCCeEEEEEccCCCEEEEEEcCCEEEEEEee-CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEc------------
Q 002196 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG------------ 484 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~------------ 484 (954)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3468899999999999999888 99999997 765432 1111111 235668999999853344553
Q ss_pred -CCCeEEEEECC-CCceEEEec----cCCCCeEEEeeeccCCccEEEEEec-CCeEEEEeCC-CCCcee--EeeC--CCC
Q 002196 485 -EDRVIKVWDAV-TGTKQYIFE----GHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYD-NLGSRV--DYDA--PGH 552 (954)
Q Consensus 485 -~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~-~~~~~~--~~~~--~~~ 552 (954)
.++.+.+|++. +++....+. .+...+.+++|+|++ +++++++. ++.|++||++ +++... .... ++.
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 466554443 245678899998766 67776654 6899999998 554322 2222 356
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC--CCeEE---EEEecCC----C-C-------CeEEEE-EeCCCCEEE
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVK---RTYHGLG----K-R-------SVGVVQ-FDTTKNRFL 614 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~---~~~~~~~----~-~-------~i~~~~-~~~~~~~l~ 614 (954)
.+..++|+|+|++++++... +..+.+|++. +++.. ..+.... . . .+..++ |+|+|++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~~---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEA---GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEECC---CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 78999999999999887642 3357777654 56543 2232211 1 1 377899 999999988
Q ss_pred EEECC-C-----eEEEEECC-CCceeEE---EecCCCCCCcceEEECC---CCCEEEEEeCC-CcEEEEEccCC
Q 002196 615 AAGDE-F-----MIKFWDMD-NVNLLAS---IDADGGLQASPCIRFNK---EGILLAVSTND-NGIKILANADG 674 (954)
Q Consensus 615 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~s~~~d-g~i~iwd~~~~ 674 (954)
+++.+ + .|.+|++. +++.... ...+ ......++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 77632 2 89999996 5665432 2222 23467899999 89999998864 89999998765
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=7.8e-17 Score=175.87 Aligned_cols=277 Identities=9% Similarity=0.102 Sum_probs=176.5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeEEEE--EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC-CCceeEEEecCCC
Q 002196 565 RLFSCGTNKEGESYLVEWNESEGAVKRT--YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASIDADGG 641 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 641 (954)
.+++++....+...+..+|..+++.... ........+..++|+|+++++++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~- 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI- 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-
Confidence 3455554322222233345667765322 221122257789999999999999887 99999997 777654433211
Q ss_pred CCCcceEEECCCCCE--EEEEe-------------CCCcEEEEEccC-CCeeEEEeccccccceecchhccccCCccccc
Q 002196 642 LQASPCIRFNKEGIL--LAVST-------------NDNGIKILANAD-GIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~--l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 705 (954)
.....+++|+|+|++ ++++. .+|.+.+|++.. + +....+..
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g-~~~~~~~~---------------------- 138 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG-KLEKNVQN---------------------- 138 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC-CEEEEEEE----------------------
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC-cCcceEee----------------------
Confidence 123667999999994 44442 577888888763 3 22111100
Q ss_pred cCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEe
Q 002196 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (954)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 785 (954)
+. ..+...+.+++|+
T Consensus 139 ------------------------------------------------~~-----------------~~~~~~~~~~~~s 153 (365)
T 1jof_A 139 ------------------------------------------------YE-----------------YQENTGIHGMVFD 153 (365)
T ss_dssp ------------------------------------------------EE-----------------CCTTCCEEEEEEC
T ss_pred ------------------------------------------------EE-----------------eCCCCcceEEEEC
Confidence 00 0023467889999
Q ss_pred cCCceEEEeec-CCeEEEeeccCCCCCCCCcccCCCCccccCCCCccccc-ccCCCCCCCCCccEEEeccCCCeEEEec-
Q 002196 786 NSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS- 862 (954)
Q Consensus 786 pdg~~l~~~~~-dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~la~~s- 862 (954)
|||++++++.. ++.|++|++.. +++... ..+....+...+..++|+|||+++++++
T Consensus 154 pdG~~l~~~~~~~~~v~~~~~~~---------------------~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 154 PTETYLYSADLTANKLWTHRKLA---------------------SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECT---------------------TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCCEEEEEcCCCCEEEEEEECC---------------------CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence 99998887764 67999998751 111100 0011001345688999999999988776
Q ss_pred -CCeEEEEEcc--cccEE------EeeCC----CCC------CeeEEE-ecCCCCceEEEEecCc------cEEEEecc-
Q 002196 863 -GGKISLFNMM--TFKTM------TTFMP----PPP------AATFLA-FHPQDNNIIAIGMEDS------SIQIYNVR- 915 (954)
Q Consensus 863 -dg~i~iwd~~--~~~~~------~~~~~----h~~------~v~~l~-~sp~d~~~lasgs~dg------~i~iwd~~- 915 (954)
++.|.+|++. +++.. ..+.. |.. .+..++ |+| ||++|+++..+. +|.+|++.
T Consensus 213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 6899999875 56542 12221 222 488999 999 899887776433 89999996
Q ss_pred ccceEE---EecCCccceeEEEEec---CCCeEEEecCC-cceec
Q 002196 916 VDEVKT---KLKGHQKRITGLAFSN---TLNVLVSSGAD-SQVRN 953 (954)
Q Consensus 916 ~~~~~~---~~~~h~~~V~~l~~s~---dg~~l~s~s~D-g~I~i 953 (954)
+|+... ....+...+..++|+| ||++|++++.+ ++|+|
T Consensus 292 ~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 676543 2334555678899999 89999998875 77764
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=1.2e-16 Score=177.09 Aligned_cols=281 Identities=10% Similarity=-0.008 Sum_probs=186.5
Q ss_pred eeEEEEcCCCCeEEEEEEcCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 359 VKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
+.+++|||||++++++...+| .|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 788999999997666655433 688889988765431 12222223347899999999999
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeecccCCEEE-------------------EEEecCCCceEEEEE-----cCCCeEEEE
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVND-------------------LAFSYPNKQLSVVTC-----GEDRVIKVW 492 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~~~~~~~l~s~-----~~dg~i~iw 492 (954)
+.++.|++|++.+++... ....+...... +.|+|+++. ++.. ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999998876433 22223332222 356777774 3332 466789999
Q ss_pred ECCCCceEEEeccCCCCeEEEeeec-cCCccEEEEEecC------CeEEEEeCCCCCceeEeeCC-CCceEEEEECCCCC
Q 002196 493 DAVTGTKQYIFEGHESPVYSICPHH-KENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGA 564 (954)
Q Consensus 493 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~ 564 (954)
|+.+++..... .+...+..+.|+| ++ ..++..+.+ ..|.+||+............ ...+..+.|+|+|+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS
T ss_pred ECCCCcEEeec-cCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC
Confidence 99988765554 4667788899987 44 556655543 35888888755433322211 22578899999999
Q ss_pred EEEEEEeCC-CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC-CCCEEEEEE----------------CCCeEEEEE
Q 002196 565 RLFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAG----------------DEFMIKFWD 626 (954)
Q Consensus 565 ~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~dg~i~iwd 626 (954)
.|+.++.+. .....|++||+.+++....... . ... +.|+| +|+++++++ .++.|++||
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEEeeeC-C--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 887776432 2224599999998875443322 2 233 88999 999888765 347899999
Q ss_pred CCCCceeEEEecCCCCC---------CcceEEECCCCCEEEEEeC-CCcEEEEEc
Q 002196 627 MDNVNLLASIDADGGLQ---------ASPCIRFNKEGILLAVSTN-DNGIKILAN 671 (954)
Q Consensus 627 ~~~~~~~~~~~~~~~~~---------~v~~v~~s~~~~~l~s~~~-dg~i~iwd~ 671 (954)
+.+++... +..+.... .+..++|+|||+.|+.++. ++...+|.+
T Consensus 327 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 327 TKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 98877543 33221100 2567899999998887765 455555544
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=6.6e-16 Score=167.46 Aligned_cols=262 Identities=11% Similarity=0.083 Sum_probs=180.6
Q ss_pred cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc----------CCEEEEEE
Q 002196 377 NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----------KHIVHLYT 446 (954)
Q Consensus 377 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~----------dg~i~iwd 446 (954)
.|+.|.+||..+++.+.. +..+..+ .++|+|||+++++++. ++.|.+||
T Consensus 29 ~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp GGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred ccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 377999999999887643 2223344 8999999999998863 67899999
Q ss_pred eeCCcceeeeeeeec---ccCCEEEEEEecCCCceEEEEEc--CCCeEEEEECCCCceEEE-eccCCCCeEEEeeeccCC
Q 002196 447 YHGGDELRNHLEIEA---HVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHHKEN 520 (954)
Q Consensus 447 ~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 520 (954)
..+++.+........ +......++|+|||+. |+++. .+++|.+||+.+++.+.. +.. .. ...+.+.|.+.
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~ 163 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRP 163 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSS
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCC
Confidence 998876653322111 2345678999999995 55544 368999999999988877 553 22 22244555443
Q ss_pred ccEEEEEecCCeEEEEeCCCCCcee-E------eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe--EEE
Q 002196 521 IQFIFSTATDGKIKAWLYDNLGSRV-D------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKR 591 (954)
Q Consensus 521 ~~~l~s~s~dg~i~iwd~~~~~~~~-~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~ 591 (954)
..+++.+.||.+.+|++....... . +.....+ ..+.+++++..++..+.+ +.+.++|+.... ...
T Consensus 164 -~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~----~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 164 -RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYY----GNVYSADFSGDEVKVDG 237 (361)
T ss_dssp -SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTT----SEEEEEECSSSSCEEEE
T ss_pred -eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCC----CeEEEEEecCCCceecc
Confidence 578888999999999986533332 1 1111111 233346777777766542 358999986543 222
Q ss_pred EEecCC------C---CCeEEEEEeCCCCEEEEEEC-----------CCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 592 TYHGLG------K---RSVGVVQFDTTKNRFLAAGD-----------EFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 592 ~~~~~~------~---~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
.+.... . .....++|+|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~s 313 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTID 313 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEEC
Confidence 222110 0 01123689999888887653 3589999999999999998653 7899999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
|||++|++++. +.|.+||..++
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCEEEEeCC-CeEEEEECCCC
Confidence 99999998886 99999999886
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.1e-16 Score=177.13 Aligned_cols=309 Identities=11% Similarity=0.017 Sum_probs=194.2
Q ss_pred EeCCCCCceeEeeCCCC-----ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC
Q 002196 536 WLYDNLGSRVDYDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (954)
Q Consensus 536 wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 610 (954)
+|..++.....+..+.. .+..++|+|||++|+..... .+...|++||+.+++....... .......+.|+|+|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecC-CCCccccceECCCC
Confidence 35555554444433322 25678899999998887643 3355689999998876544332 22123337799999
Q ss_pred CEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccccccee
Q 002196 611 NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (954)
Q Consensus 611 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 690 (954)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|...
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~~------------------ 146 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEILK------------------ 146 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEEG------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCccccccccc------------------
Confidence 9999999999999999998877665553321 67777777776655554444310
Q ss_pred cchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccc-----cccccccccccccccCCCce
Q 002196 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD-----EAVEKSRIWKLTEITEPSQC 765 (954)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~-----~~d~~i~iw~~~~~~~~~~~ 765 (954)
..+.++++.++.. ..+..|.+|++.+. ..
T Consensus 147 ------------------------------------------~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g----~~ 180 (396)
T 3c5m_A 147 ------------------------------------------RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG----EL 180 (396)
T ss_dssp ------------------------------------------GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC----CE
T ss_pred ------------------------------------------cccCCCCcceeeeeeccCCCcceEEEEECCCC----cE
Confidence 0112334444432 34567888887642 22
Q ss_pred eEEecCCCCCccceEEEEEec-CCceEEEeecCC------eEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCC
Q 002196 766 RSLRLPDNLTAMRVSRLIYTN-SGLAILALASNA------VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (954)
Q Consensus 766 ~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~dg------~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~ 838 (954)
..+. .+...+..+.|+| ||+.|+..+.++ .+.+|+ ..++..... ..
T Consensus 181 ~~~~----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d----------------------~~~~~~~~l-~~ 233 (396)
T 3c5m_A 181 EVIH----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN----------------------EDGSNVRKI-KE 233 (396)
T ss_dssp EEEE----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE----------------------TTSCCCEES-SC
T ss_pred Eeec----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE----------------------CCCCceeEe-ec
Confidence 2222 1456688999999 888787766532 344443 333322211 11
Q ss_pred CCCCCCCccEEEeccCCCeEEEec-C-----CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEe--------
Q 002196 839 DTNPEDAVPCFALSKNDSYVMSAS-G-----GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-------- 904 (954)
Q Consensus 839 ~~~~~~~v~~~~~s~dg~~la~~s-d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs-------- 904 (954)
. .....+..++|||||++|+.++ + +.|++||+.+++........ ... +.|+|.||+++++++
T Consensus 234 ~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 234 H-AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp C-CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC-----
T ss_pred c-CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeec
Confidence 1 0123577889999999888775 3 34999999888765433211 233 889983566777654
Q ss_pred --------cCccEEEEeccccceEEEecCCcc-----------ceeEEEEecCCCeEEEecC-Ccc
Q 002196 905 --------EDSSIQIYNVRVDEVKTKLKGHQK-----------RITGLAFSNTLNVLVSSGA-DSQ 950 (954)
Q Consensus 905 --------~dg~i~iwd~~~~~~~~~~~~h~~-----------~V~~l~~s~dg~~l~s~s~-Dg~ 950 (954)
.++.|++||+.+++.. .+..|.. .+..++|+|||++|+.++. ++.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~ 374 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV 374 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS
T ss_pred cccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCC
Confidence 3478999999988753 4444544 2567899999998887665 443
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=3.5e-15 Score=177.36 Aligned_cols=254 Identities=10% Similarity=-0.022 Sum_probs=176.8
Q ss_pred cccCCCCCCeEEEEEccCCCEEEEE--EcCCEEEEEEeeCCcceeeeeeeecccCCEE---------EEEEe--cCCCce
Q 002196 412 SLSSDYTASVNRVMWSPDGTLFGVA--YSKHIVHLYTYHGGDELRNHLEIEAHVGSVN---------DLAFS--YPNKQL 478 (954)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~~~~s--~~~~~~ 478 (954)
..+.+|...+..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3466799999999999887667766 457889999975444333 4556666655 66676 999951
Q ss_pred EEEEEcCCCeEEEEECC--CCceEEEecc-----CCCCeEEEeeeccCCccEEEEEecC----------CeEEEEeCCCC
Q 002196 479 SVVTCGEDRVIKVWDAV--TGTKQYIFEG-----HESPVYSICPHHKENIQFIFSTATD----------GKIKAWLYDNL 541 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~ 541 (954)
++++...+..|.+|++. .......+.. |...+.+++|+|++ +.|++++.+ ..|++||+.+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 13333346778888875 2033455555 56678889998766 788888876 58999999872
Q ss_pred -----CceeEee-CCCCceEEEEECCCCCEEEEEEeCCC----CceEEEEEeCC-CC---eEEEEEecCCCCCeEEEEEe
Q 002196 542 -----GSRVDYD-APGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNES-EG---AVKRTYHGLGKRSVGVVQFD 607 (954)
Q Consensus 542 -----~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~i~~~~~~ 607 (954)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +.......+.. .+..+.|+
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~~s 250 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAEWA 250 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEEEC
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceEEC
Confidence 2333343 44457788999999999998876542 13579999998 57 44333333333 78899999
Q ss_pred CCCCEEEEEECCC--eEEEEECCCCceeEEEecCCCC------CCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 608 TTKNRFLAAGDEF--MIKFWDMDNVNLLASIDADGGL------QASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 608 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
|||+++++++.++ .|++||+.+++.......+... ..+..++|+|+++++++++. +.+++|.+.
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 9999777777778 7777787677654443322111 01567999999999999998 999999543
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=1.9e-13 Score=155.40 Aligned_cols=274 Identities=16% Similarity=0.103 Sum_probs=196.8
Q ss_pred eEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEee-
Q 002196 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH- 448 (954)
Q Consensus 370 ~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~- 448 (954)
.++++...++.|.++|..+++.+.+. . ....+..+.|||||+++++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i-------------------~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVL-------------------D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE-------------------E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEE-------------------e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 47777778999999999999877541 1 22456799999999999999999999999995
Q ss_pred -CCcceeeeeeeecccCCEEEEEEe----cCCCceEEEEEcCCCeEEEEECCCCceEEEeccC----------CC-CeEE
Q 002196 449 -GGDELRNHLEIEAHVGSVNDLAFS----YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH----------ES-PVYS 512 (954)
Q Consensus 449 -~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~ 512 (954)
+++.+. .+.. ......++|+ |||+. ++++...+++|.++|..+.+.+..+... .. .+..
T Consensus 228 ~t~~~v~---~i~~-G~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKI-GSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEEC-CSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEec-CCCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 665554 3433 2346789999 69996 4556667799999999999988876532 12 5667
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
+..++... .+++....+|.|.++|.......... .........+.|+|+|++++++... ...|.++|..+++.+.
T Consensus 303 i~~s~~~~-~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEEEE
T ss_pred EEEcCCCC-EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcEEE
Confidence 77666543 56777778899999998765433222 1233456788999999999887643 3459999999999887
Q ss_pred EEec-CCC-CCeEEE-EEeCCCCEEEEEE--CCCeEEEEECCC-------CceeEEEecCCCCCCcceEEECCCCCEEEE
Q 002196 592 TYHG-LGK-RSVGVV-QFDTTKNRFLAAG--DEFMIKFWDMDN-------VNLLASIDADGGLQASPCIRFNKEGILLAV 659 (954)
Q Consensus 592 ~~~~-~~~-~~i~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 659 (954)
.+.. ... .+-..+ .++|++..+.+.+ .++.|.++|..+ .+.++++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7765 211 011122 2688755554443 568999999987 567788876432 2245788999999888
Q ss_pred EeC-------CCcEEEEEccCC
Q 002196 660 STN-------DNGIKILANADG 674 (954)
Q Consensus 660 ~~~-------dg~i~iwd~~~~ 674 (954)
... .+.|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 663 358999998754
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=8.5e-15 Score=158.73 Aligned_cols=274 Identities=11% Similarity=0.126 Sum_probs=181.8
Q ss_pred CCCeeEEEEcCCCCeEEEEEE--------cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 356 GSAVKSMDFHPVQQILLVVGT--------NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
-..+..+++ ||++++.+.. .++.|.+||+.+++... + ..+.+++||
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~S 67 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRIS 67 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEEC
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEEC
Confidence 345777788 8886665532 25679999998876432 2 467899999
Q ss_pred cCCCEEEEEEcC---C--EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC-----------------
Q 002196 428 PDGTLFGVAYSK---H--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----------------- 485 (954)
Q Consensus 428 pdg~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~----------------- 485 (954)
|||++|+.++.+ + .|.+|++.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEccccee
Confidence 999999988754 3 37777887766433 233334 999999999995 444432
Q ss_pred ----------CCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCC-------eEEEEeCCCCCceeEee
Q 002196 486 ----------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDG-------KIKAWLYDNLGSRVDYD 548 (954)
Q Consensus 486 ----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~ 548 (954)
...|++||+.+++.+..+.. . .+..+.|+++ | +++++..++ ...+|.+++ .....+.
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd--g-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~ 214 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD--K-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMF 214 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT--E-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC--e-EEEEEecccccccccccccEEEeCC-CceEEec
Confidence 35799999998887455554 3 7788888764 4 667665542 445555443 3333333
Q ss_pred CCCCceEEEEECCCCCEEEEEEeCCC----CceEEEEEeCCCCeEEEEEecCCCCCeEE-EEEeCCCCEEEEEECCCeEE
Q 002196 549 APGHSSTMMAYSADGARLFSCGTNKE----GESYLVEWNESEGAVKRTYHGLGKRSVGV-VQFDTTKNRFLAAGDEFMIK 623 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~ 623 (954)
.+ ..+..+ +|+|+.|+.++.+.. ....|.+|| +++.......+.. .+.. +.|+ ++ .+++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEE
Confidence 23 344443 999999988775432 134688898 5654433333333 6775 8899 88 888889999999
Q ss_pred EEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE-EEEEccCCCeeEEEecccc
Q 002196 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRT 685 (954)
Q Consensus 624 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~ 685 (954)
+| +.+++....+. + ...|.+++|+| .++++++.++.. .+|.+. + + ...+..+.
T Consensus 287 l~-~~~g~~~~~~~-~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g-~-~~~lt~~n 340 (347)
T 2gop_A 287 LY-IWDGEIKPIAK-G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-G-E-EKQLTDYN 340 (347)
T ss_dssp EE-EESSSEEEEEC-S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-S-S-EEECCCTT
T ss_pred EE-EcCCceEEEec-C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C-c-EEEecccc
Confidence 99 87666544332 2 45788999999 677777777665 778776 4 2 33344443
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=2.9e-13 Score=153.89 Aligned_cols=332 Identities=12% Similarity=0.138 Sum_probs=223.3
Q ss_pred eEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC--CCCceeEeeCCCCceE
Q 002196 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSST 555 (954)
Q Consensus 478 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~ 555 (954)
+++++...++.|.++|..+++.+..+... ..+..+.+++++ +++++++.|+.|.+||+. +.+....+.. +....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 37888899999999999999999888743 356688888765 789999999999999995 5555555544 44678
Q ss_pred EEEEC----CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC----------CCCeEEEEEeCCCCEEEE-EECCC
Q 002196 556 MMAYS----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG----------KRSVGVVQFDTTKNRFLA-AGDEF 620 (954)
Q Consensus 556 ~~~~s----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~-~~~dg 620 (954)
.++|+ |||++++++... ...+.++|..+.+.+..+.... ...+..+..++++..++. ...+|
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~---~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYW---PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEE---TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred eeEEccccCCCCCEEEEEEcc---CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 99999 699999988754 3458999999999888775321 225677888888765554 44779
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEe-CCCcEEEEEccCCCeeEEEecc-ccccceecchhcccc
Q 002196 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVES-RTFDASRVASAAIVK 698 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 698 (954)
.|.++|..+.+.+....... ......+.|+|+|++++++. .++.|.++|..++ ++...+.- ...
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~------------ 386 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQT------------ 386 (567)
T ss_dssp EEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSS------------
T ss_pred eEEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcC------------
Confidence 99999998765433322211 22456889999999887665 5789999999988 44433321 000
Q ss_pred CCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccc
Q 002196 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (954)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (954)
.|.+.
T Consensus 387 ---------------------------------------------------------------------------Phpg~ 391 (567)
T 1qks_A 387 ---------------------------------------------------------------------------PHPGR 391 (567)
T ss_dssp ---------------------------------------------------------------------------BCCTT
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 02111
Q ss_pred eEEEEEecCCceEEEee--cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCC
Q 002196 779 VSRLIYTNSGLAILALA--SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (954)
Q Consensus 779 v~~~~~spdg~~l~~~~--~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 856 (954)
-..+ ++|++..+.+.+ .++.|.+++....... . ..| +.+. .+.. ....-..+.++||++
T Consensus 392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~-~---------~~~-----kvv~-~i~~--~g~g~~~i~~~p~~~ 452 (567)
T 1qks_A 392 GANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP-D---------NAW-----KILD-SFPA--LGGGSLFIKTHPNSQ 452 (567)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-T---------TBT-----SEEE-EEEC--SCSCCCCEECCTTCS
T ss_pred ceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc-c---------ccC-----EEEE-EEec--CCCCCEEEEeCCCCC
Confidence 1112 578755555443 4688999986532100 0 001 1111 1211 112223467899999
Q ss_pred eEEEec--------CCeEEEEEcccc-----c-EEEeeC--------CCCCCeeEEEecCCCCceEEEEe-----cCccE
Q 002196 857 YVMSAS--------GGKISLFNMMTF-----K-TMTTFM--------PPPPAATFLAFHPQDNNIIAIGM-----EDSSI 909 (954)
Q Consensus 857 ~la~~s--------dg~i~iwd~~~~-----~-~~~~~~--------~h~~~v~~l~~sp~d~~~lasgs-----~dg~i 909 (954)
++.+.. .++|.++|+.+. . ....+. .....+..+.|+| +|+.+.... .++.|
T Consensus 453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 453 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEE
T ss_pred eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcE
Confidence 988765 248999999877 2 112232 1234689999999 777665543 37899
Q ss_pred EEEeccccceEEEecC
Q 002196 910 QIYNVRVDEVKTKLKG 925 (954)
Q Consensus 910 ~iwd~~~~~~~~~~~~ 925 (954)
.|+|.++++++.+++.
T Consensus 532 ~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 532 VVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEETTTTEEEEEECC
T ss_pred EEEECCCceEEEEeCC
Confidence 9999999999988875
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=6.2e-15 Score=175.21 Aligned_cols=286 Identities=10% Similarity=-0.009 Sum_probs=186.7
Q ss_pred cCCCCeeEEEEcCCCCeEEEEE--EcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE---------
Q 002196 354 NQGSAVKSMDFHPVQQILLVVG--TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN--------- 422 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 422 (954)
.|...|..++|++++- +++.+ +.++...||....+..... +..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCc
Confidence 3778899999998754 44555 4478899998644332221 344444544
Q ss_pred EEEEc--cCCCE-EEEEEc-CCEEEEEEee--C-Ccceeeeeeeec-----ccCCEEEEEEecCCCceEEEEEcCC----
Q 002196 423 RVMWS--PDGTL-FGVAYS-KHIVHLYTYH--G-GDELRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTCGED---- 486 (954)
Q Consensus 423 ~l~~s--pdg~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~~~l~s~~~d---- 486 (954)
...|+ |||+. |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|+.++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99999 776654 4556666655 2 33 33 3444 667889999999999 46666665
Q ss_pred ------CeEEEEECCC------CceEEEec-cCCCCeEEEeeeccCCccEEEEEecC--------CeEEEEeCC-CC---
Q 002196 487 ------RVIKVWDAVT------GTKQYIFE-GHESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYD-NL--- 541 (954)
Q Consensus 487 ------g~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~-~~--- 541 (954)
..|++||+.+ ++. ..+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999988 554 4555 566677778888765 788877755 379999998 44
Q ss_pred CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCC-------CeEEEEEeCCCCEEE
Q 002196 542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR-------SVGVVQFDTTKNRFL 614 (954)
Q Consensus 542 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~ 614 (954)
........+...+..+.|+|||++++++.. ++...|++||..+++.......+... .+..++|+|++..++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 222333334568899999999995555433 33446888998777765443332221 145688999999999
Q ss_pred EEECCCeEEEE--ECCCCceeEEEecCCCCCCcceE-EECCCCCEEEEEeCCCc--EEEEEccCC
Q 002196 615 AAGDEFMIKFW--DMDNVNLLASIDADGGLQASPCI-RFNKEGILLAVSTNDNG--IKILANADG 674 (954)
Q Consensus 615 ~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~s~~~dg~--i~iwd~~~~ 674 (954)
+++. +.+++| |..+++ +..+..+ ...+..+ +++.+.-++++++.+.. |.+||+.++
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9988 998998 655555 5556544 3456666 44444334445555544 555566566
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=1.6e-13 Score=148.57 Aligned_cols=258 Identities=11% Similarity=0.134 Sum_probs=171.6
Q ss_pred CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC-CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeC
Q 002196 530 DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (954)
Q Consensus 530 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 608 (954)
++.|.+||+.+...... ..+..+.|+|||+.|+..+.++ .+...|++||+.+++........ . +..+.|+|
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~--~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N--IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E--EEEEEECT
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C--ccceeECC
Confidence 56789999987654332 4678899999999999877543 23556899999988766554433 2 88899999
Q ss_pred CCCEEEEEEC---------------------------CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 609 TKNRFLAAGD---------------------------EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 609 ~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
+|+.|+.++. ...|++||+.+++.+..+.. . .+..++|+||| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEe
Confidence 9999988863 25799999998887455543 1 67899999999 777776
Q ss_pred CCC-------cEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCC
Q 002196 662 NDN-------GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (954)
Q Consensus 662 ~dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (954)
.++ ...+|.+.++ +. +.+
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~-~~-~~l----------------------------------------------------- 213 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG-KE-EKM----------------------------------------------------- 213 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT-EE-EEE-----------------------------------------------------
T ss_pred cccccccccccccEEEeCCC-ce-EEe-----------------------------------------------------
Confidence 542 2233332221 11 000
Q ss_pred CCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCC------eEEEeeccCC
Q 002196 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA------VHKLWKWPRN 808 (954)
Q Consensus 735 ~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg------~v~lw~~~~~ 808 (954)
.. + ..+..+ +|||++|+.++.++ ...||
T Consensus 214 ----------------------------------~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~----- 247 (347)
T 2gop_A 214 ----------------------------------FE----K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLY----- 247 (347)
T ss_dssp ----------------------------------EE----E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEE-----
T ss_pred ----------------------------------cc----C-cceeeE--CCCCCEEEEEEccccCCccccceEE-----
Confidence 00 1 122333 89999888877543 12222
Q ss_pred CCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccE-EEeccCCCeEEEec-CCeEEEEEcccccEEEeeCCCCCC
Q 002196 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC-FALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPA 886 (954)
Q Consensus 809 ~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~h~~~ 886 (954)
+|+ ++.... ...+ +...+.. ++|+ || ++++++ ++.++|| +.+++....+. +...
T Consensus 248 ---------------~~d--~~~~~~-l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~ 303 (347)
T 2gop_A 248 ---------------IYD--GKEVMG-ILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHW 303 (347)
T ss_dssp ---------------EEC--SSCEEE-SSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSE
T ss_pred ---------------EEC--CCceEe-cccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCe
Confidence 233 222221 1222 5567776 8999 88 888877 8999999 88776654444 5777
Q ss_pred eeEEEecCCCCceEEEEecCccE-EEEeccccceEEEecCCccce
Q 002196 887 ATFLAFHPQDNNIIAIGMEDSSI-QIYNVRVDEVKTKLKGHQKRI 930 (954)
Q Consensus 887 v~~l~~sp~d~~~lasgs~dg~i-~iwd~~~~~~~~~~~~h~~~V 930 (954)
|.+++|+| .++++++.++.. .||.++ ++ ...+..|+..+
T Consensus 304 v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~~ 343 (347)
T 2gop_A 304 IMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYNDPI 343 (347)
T ss_dssp EEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTSTT
T ss_pred EEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccHhH
Confidence 99999997 577777777765 788777 65 55577666543
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=3.1e-14 Score=152.55 Aligned_cols=245 Identities=12% Similarity=0.105 Sum_probs=178.4
Q ss_pred CCeeEEEEcCCCCeEEEEEEcC------------------------CeEEEEeCCCCceeeeeeeEEEeccCCCcccccc
Q 002196 357 SAVKSMDFHPVQQILLVVGTNM------------------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 412 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (954)
+.|.+++++|+|+ ++++...+ +.|.+||..+++....
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4688888888887 66666655 4799999988876542
Q ss_pred ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCc-ceeeeeee---------ecccCCEEEEEEec-CCCceEEE
Q 002196 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD-ELRNHLEI---------EAHVGSVNDLAFSY-PNKQLSVV 481 (954)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-~~~~~~l~ 481 (954)
.-.++-.....++++|+|+++++...++.|++|+..... .+. .+ .++-.....++++| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012355678999999999988888888999999986542 222 22 23445789999999 666 677
Q ss_pred EEc-CCCeEEEEECCCCceEEEeccC----------CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--
Q 002196 482 TCG-EDRVIKVWDAVTGTKQYIFEGH----------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-- 548 (954)
Q Consensus 482 s~~-~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 548 (954)
+.+ .++.|++|| .+++.+..+... -.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 678877777432 2347889988753 3677888889999999998766665553
Q ss_pred CCCCceEEEEECCCCCEEEEEEeC---CCCceEEEEEeCCCCeEEEEEe---cCCCCCeEEEEEeCCCCEEEEEECCCeE
Q 002196 549 APGHSSTMMAYSADGARLFSCGTN---KEGESYLVEWNESEGAVKRTYH---GLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i 622 (954)
.....+..++++| +..+.+.+.. ......+.+||..+++.+..+. .+.. .+..++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3345788999999 4333332210 1123469999999999988874 3333 68899999999777777789999
Q ss_pred EEEECCC
Q 002196 623 KFWDMDN 629 (954)
Q Consensus 623 ~iwd~~~ 629 (954)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.2e-13 Score=144.91 Aligned_cols=246 Identities=11% Similarity=0.090 Sum_probs=177.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee---ecccCCEEEEEEe-cCCCceEEEEEc-CCCeE
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFS-YPNKQLSVVTCG-EDRVI 489 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s-~~~~~~~l~s~~-~dg~i 489 (954)
.++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+..+++. +++. ++++.. .++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEE
Confidence 3466789999999999988888889999999987 4433321110 1344678999995 5555 455553 38899
Q ss_pred EEEECCCCceEEEecc-CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--CCCCceEEEEECCCCCEE
Q 002196 490 KVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARL 566 (954)
Q Consensus 490 ~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l 566 (954)
.+|| .+++.+..+.. +...+.++++.+++ .++++...++.|.+||... .....+. .....+..++++++|+.+
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 9999 67777776643 44568889887654 6777777889999999653 3333333 233468999999999866
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCC-CCCeEEEEEeCCCCEEEEEECCC-eEEEEECCCCceeEEEecCCCCCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
++... +..|.+||. +++.+..+.... ...+..++++++|+.+++...++ .|.+||. +++.+..+..+.....
T Consensus 179 v~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 179 ISDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EEECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 65443 345999997 456666665432 13678999999998888887776 9999995 5677777765543345
Q ss_pred cceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 645 SPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.+++++|+|+++++ +.|+.|++|++...
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 678999999987776 67999999997653
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=5.2e-14 Score=150.80 Aligned_cols=245 Identities=9% Similarity=0.027 Sum_probs=179.6
Q ss_pred CCCeEEEEEccCCCEEEEEEcC------------------------CEEEEEEeeCCcceeeeeeee-cccCCEEEEEEe
Q 002196 418 TASVNRVMWSPDGTLFGVAYSK------------------------HIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFS 472 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s 472 (954)
-+.+.+++++|+|+++++...+ +.|.+||..+++... .+. ++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEEEC
Confidence 4789999999999999888777 479999998887654 222 445578999999
Q ss_pred cCCCceEEEEEcCCCeEEEEECCCCc-eEEEe---------ccCCCCeEEEeeeccCCccEEEEEe-cCCeEEEEeCCCC
Q 002196 473 YPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIF---------EGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNL 541 (954)
Q Consensus 473 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~ 541 (954)
|+|+ ++++...++.|++||..... .+..+ .++......+++++. ++.++++.+ .++.|++|+. ++
T Consensus 100 ~~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~~-~g 175 (329)
T 3fvz_A 100 TDGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFSP-SG 175 (329)
T ss_dssp TTSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEECT-TS
T ss_pred CCCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEcC-CC
Confidence 9999 78888899999999975442 55555 344456889999873 236777776 6899999994 34
Q ss_pred CceeEeeCCC----------CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCC
Q 002196 542 GSRVDYDAPG----------HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTK 610 (954)
Q Consensus 542 ~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 610 (954)
.....+...+ .....++++|++..++++.. +...|++||..+++.+..+... ....+..++++| +
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence 4443332211 24789999999555555542 2456999999989988887533 223678899999 4
Q ss_pred CEEEEE-------ECCCeEEEEECCCCceeEEEec-CCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 611 NRFLAA-------GDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 611 ~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
..+.+. ..+..|++|+..+++.+..+.. ..+......++++|+|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333333 2345899999999999888742 12345678999999998888888899999999754
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=1.2e-13 Score=165.02 Aligned_cols=250 Identities=10% Similarity=0.007 Sum_probs=176.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEcCC-----EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe-
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 488 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~- 488 (954)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+. |+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~~--l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG--MFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE--EEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCCE--EEEEEECCcc
Confidence 34556789999999999999886644 899999999876542 122 223678999999994 666666554
Q ss_pred ---------------EEEEECCCCce--EEEec--cCCCCeEEEeeeccCCccEEEEEec-----CCeEEEEeCCC----
Q 002196 489 ---------------IKVWDAVTGTK--QYIFE--GHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYDN---- 540 (954)
Q Consensus 489 ---------------i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~---- 540 (954)
|++|++.++.. ...+. .|...+..+.|++++ ++|+..+. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988762 22333 345567788887766 67777664 56899999986
Q ss_pred --CC-ceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE--EEEEecCCC-CCeEEEEEeCCCCEEE
Q 002196 541 --LG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGK-RSVGVVQFDTTKNRFL 614 (954)
Q Consensus 541 --~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~ 614 (954)
+. ....+..+...+.. .|+|+|+.|+..+..+.....|.+||+.++.. ...+..+.. ..+..++|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 33444444444443 58899999888775444456799999987741 234444433 3577888987777788
Q ss_pred EEECCC--eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEE-e---CCCcEEEEEccCCC
Q 002196 615 AAGDEF--MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-T---NDNGIKILANADGI 675 (954)
Q Consensus 615 ~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~-~---~dg~i~iwd~~~~~ 675 (954)
+...++ .|++|++.+++.+..+..+ ...+..++++|++..++.. + ..+.|+.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888887 4677788778877777755 4567889999998766543 2 24789999998874
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=4e-13 Score=140.90 Aligned_cols=245 Identities=13% Similarity=0.158 Sum_probs=173.7
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc-cCCCEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-PDGTLFG 434 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~ 434 (954)
-..+.+++++|+|+ ++++...++.|.+||.. ++.... +.. .....+|...+.+++++ +++++++
T Consensus 29 ~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~-----~~~--------~~~~~~~~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 29 FTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ-----FGE--------CGKRDSQLLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp BSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE-----ECC--------BSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred cCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE-----ecc--------cCCCcccccCceEEEEEcCCCeEEE
Confidence 35789999999998 77888889999999987 443321 000 00012355678999994 6777666
Q ss_pred EEEc-CCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec--cCCCCe
Q 002196 435 VAYS-KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPV 510 (954)
Q Consensus 435 s~~~-dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v 510 (954)
+... ++.|.+|+ .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. .+...+
T Consensus 94 ~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 94 TERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred EcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCc
Confidence 6643 88999999 4555443 232 3445789999999998 6788888899999995 566666664 345568
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC--CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
..+++++++ .++++.+.++.|++||... .....+...+ ..+..++++++|+.+++...++ ..|.+||. +++
T Consensus 167 ~~i~~~~~g--~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~---~~i~~~~~-~g~ 239 (286)
T 1q7f_A 167 NGVVVNDKQ--EIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNN---FNLTIFTQ-DGQ 239 (286)
T ss_dssp EEEEECSSS--EEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS---CEEEEECT-TSC
T ss_pred EEEEECCCC--CEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC---EEEEEECC-CCC
Confidence 889987754 6777777899999999753 3344443332 4788999999998777664321 25999995 566
Q ss_pred EEEEEecCCC-CCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 589 VKRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 589 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
.+..+..+.. ..+..++++|+|+.+++ +.++.|++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 6666665432 24778999999976666 67999999998653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=8.7e-14 Score=149.70 Aligned_cols=273 Identities=14% Similarity=0.037 Sum_probs=183.8
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
..|.+++|+|++. .++..+.++.++.|. ++.... +..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 3567778888776 344446677888882 222211 33456678999999999988888
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC----CeEEEEECCCCceEEEec--cCCCCe
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFE--GHESPV 510 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v 510 (954)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998876433 2224667899999999998 56666666 689999988877654443 244568
Q ss_pred EEEeeeccCCccEEEEEec------CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeC
Q 002196 511 YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 584 (954)
.++++.+++ .++++... .+.|..||.++..... +......+..++|+|+|+.++++... +..|.+||.
T Consensus 138 ~~i~~d~~g--~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETT---ANRLHRIAL 211 (333)
T ss_dssp EEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEE
T ss_pred cceEECCCC--CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCC---CCeEEEEEe
Confidence 888887754 56665543 3556666655433322 22223357889999999977665422 335999998
Q ss_pred CC-CeEEEE-----E-ecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCC----CCCcceEEECCC
Q 002196 585 SE-GAVKRT-----Y-HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG----LQASPCIRFNKE 653 (954)
Q Consensus 585 ~~-~~~~~~-----~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~ 653 (954)
.+ +..... + .......+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 332211 1 1111125778999999998888878899999998 5677777654321 125789999999
Q ss_pred CCEEEEEeCCC
Q 002196 654 GILLAVSTNDN 664 (954)
Q Consensus 654 ~~~l~s~~~dg 664 (954)
++.|+.++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87776665553
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=1e-13 Score=146.29 Aligned_cols=241 Identities=12% Similarity=0.047 Sum_probs=166.4
Q ss_pred EEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 591 RTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
..+..... ...+++|+|+++ .++++..++.|+.||..++ ...+..+ ...+.+++++++|+++++...++.|.+|
T Consensus 21 ~~l~~~~~-~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 21 RRLADGFT-WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP--SHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEECCCS-SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS--CSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred EEEecCCc-cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC--CCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 33443333 677899999998 6677778899999999887 5555544 4468899999999988877777899999
Q ss_pred EccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccc
Q 002196 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (954)
Q Consensus 670 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~ 749 (954)
|..++ +..........
T Consensus 96 d~~~g-~~~~~~~~~~~--------------------------------------------------------------- 111 (296)
T 3e5z_A 96 REPGG-EWESIADSFEG--------------------------------------------------------------- 111 (296)
T ss_dssp CSTTC-CEEEEECEETT---------------------------------------------------------------
T ss_pred cCCCC-cEEEEeeccCC---------------------------------------------------------------
Confidence 98776 22211110000
Q ss_pred cccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCC---------------eEEEeeccCCCCCCCC
Q 002196 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNA---------------VHKLWKWPRNERNSTG 814 (954)
Q Consensus 750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg---------------~v~lw~~~~~~~~~~g 814 (954)
.....+..++++|+|+.+++....| .-.||.+
T Consensus 112 ------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~--------- 158 (296)
T 3e5z_A 112 ------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL--------- 158 (296)
T ss_dssp ------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE---------
T ss_pred ------------------------CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE---------
Confidence 0112345678888888666522111 1233332
Q ss_pred cccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEEEcc-cccE---EEeeCCCCCCeeE
Q 002196 815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKT---MTTFMPPPPAATF 889 (954)
Q Consensus 815 ~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iwd~~-~~~~---~~~~~~h~~~v~~ 889 (954)
+.. +.... +.. +......++|+|||+.+++.+ ++.|++|++. ++.. ...+..+...+..
T Consensus 159 -----------~~~-g~~~~--~~~--~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~ 222 (296)
T 3e5z_A 159 -----------APD-GTLSA--PIR--DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG 222 (296)
T ss_dssp -----------CTT-SCEEE--EEC--CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS
T ss_pred -----------CCC-CCEEE--eec--CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe
Confidence 222 22111 111 445668899999999986666 7899999986 5554 3344445566789
Q ss_pred EEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEE-ecCCCeEEEecCCcceecC
Q 002196 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAF-SNTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 890 l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg~~l~s~s~Dg~I~i~ 954 (954)
+++++ +|+++++. ++.|.+||.+ |+.+..+..+.. +++++| +||++.|+.++.++..+++
T Consensus 223 i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 223 LRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred EEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 99999 88877665 7889999986 888888887777 999999 5899999999999887763
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=5.5e-13 Score=142.52 Aligned_cols=276 Identities=12% Similarity=0.042 Sum_probs=189.1
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeee
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~ 457 (954)
++.|.+||..+++....... ... -.........+++. +++.+++...++.|.+||..+++.+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~------------~~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--- 78 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFY------------RAN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--- 78 (328)
T ss_dssp CBEEEEEETTTTEEECSHHH------------HHH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE---
T ss_pred CceEEEEECCCCEEhhhhHh------------hhc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE---
Confidence 78999999999876532000 000 01122456777774 44555555567999999999988766
Q ss_pred eeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC-----CCeEEEeeeccCCccEEEEEe--cC
Q 002196 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-----SPVYSICPHHKENIQFIFSTA--TD 530 (954)
Q Consensus 458 ~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~s--~d 530 (954)
.+. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ .+ ..++.+. .+
T Consensus 79 ~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~--~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG--KYVYVNCWSYQ 151 (328)
T ss_dssp EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET--TEEEEEECTTC
T ss_pred EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC--CEEEEEcCCCC
Confidence 343 346788999999985 56666588999999999999887776433 13455666 22 3444444 48
Q ss_pred CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC------ceEEEEEeCCCCeEEEEEecCCCCCeEEE
Q 002196 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG------ESYLVEWNESEGAVKRTYHGLGKRSVGVV 604 (954)
Q Consensus 531 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 604 (954)
+.|.+||..+.+....+.. ......+.++|+|++++++..+... ...|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 9999999998776655544 3355788999999866665422100 14699999999998877765433367899
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECC-CCCEEEEE----eCCCcEEEEEccCCCeeEE
Q 002196 605 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVS----TNDNGIKILANADGIRLLR 679 (954)
Q Consensus 605 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~s~----~~dg~i~iwd~~~~~~~~~ 679 (954)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.++
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988765 89999998877532111111123578899999 56666665 568899999998 6 5555
Q ss_pred Eec
Q 002196 680 TVE 682 (954)
Q Consensus 680 ~~~ 682 (954)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=7.6e-12 Score=132.03 Aligned_cols=275 Identities=11% Similarity=0.061 Sum_probs=187.5
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
...+.+++++++|+.+++... ...|..||.. +.............+..+++++++..+++...++.|..||.. +
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~----~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHK----ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETT----TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCccceEECCCCCEEEEecC----CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 457899999999987665432 2359999988 554332212123378899999999888877778899999986 3
Q ss_pred ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCC
Q 002196 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 710 (954)
+ ...+........+.+++++++|.++++...++.|..||. ++ ... .+.
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~~~-~~~---------------------------- 135 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG-KIR-EYE---------------------------- 135 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-CEE-EEE----------------------------
T ss_pred c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC-CEE-Eec----------------------------
Confidence 3 333433222446789999999988887777888998887 44 111 000
Q ss_pred CccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCce
Q 002196 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA 790 (954)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 790 (954)
. + .....+..+++.++|..
T Consensus 136 ---------------------------------------------~--------------~--~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 136 ---------------------------------------------L--------------P--NKGSYPSFITLGSDNAL 154 (299)
T ss_dssp ---------------------------------------------C--------------S--STTCCEEEEEECTTSCE
T ss_pred ---------------------------------------------C--------------C--CCCCCCceEEEcCCCCE
Confidence 0 0 01234678889999986
Q ss_pred EEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEE
Q 002196 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (954)
Q Consensus 791 l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iw 869 (954)
.++...++.+..|+. . +......... ....+.+++++++|++.++.. ++.|.+|
T Consensus 155 ~v~~~~~~~i~~~~~-~----------------------g~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-S----------------------GDITEFKIPT--PASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEETTTTEEEEECT-T----------------------CCEEEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEeCCCCEEEEEcC-C----------------------CcEEEeeCCC--CCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 666666778887753 1 1111111111 345678999999999777766 7899999
Q ss_pred EcccccEEEe-eCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEE-ecCCccceeEEEEecCCCeEEEecC
Q 002196 870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGA 947 (954)
Q Consensus 870 d~~~~~~~~~-~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~s~s~ 947 (954)
|. +++.... +..+...+.++++++ +|+++++...++.|.+||. +++.... +..+...+.++++ ++|.++++.+.
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~ 285 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMEC 285 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETT
T ss_pred CC-CCcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecC
Confidence 99 6664432 333556799999999 8887776667889999998 4543322 3455677999999 99998887777
Q ss_pred Ccceec
Q 002196 948 DSQVRN 953 (954)
Q Consensus 948 Dg~I~i 953 (954)
++.+++
T Consensus 286 ~~l~~~ 291 (299)
T 2z2n_A 286 DKIGKL 291 (299)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 777665
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=4e-13 Score=160.41 Aligned_cols=247 Identities=9% Similarity=-0.020 Sum_probs=171.2
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCC----eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
..+..++|||||++++++.+.+| .|++||+.+++..... . ....+..++|+|||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~------------------~--~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------L--ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------E--EEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc------------------c--cCcccceEEEEeCCCE
Confidence 36889999999996655555444 8999999999865420 1 1123678999999999
Q ss_pred EEEEEcCCE----------------EEEEEeeCCccee-eeeeeecccCCEEEEEEecCCCceEEEEEcC-----CCeEE
Q 002196 433 FGVAYSKHI----------------VHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIK 490 (954)
Q Consensus 433 l~s~~~dg~----------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-----dg~i~ 490 (954)
|+.++.++. |++|++.++.... .......|...+..+.|+|||+. |+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEE
Confidence 999988765 9999998875321 11122235566889999999995 443332 67899
Q ss_pred EEECCC------Cc-eEEEeccCCCCeEEEeeeccCCccEEEEEecC----CeEEEEeCCCCCc--eeEeeCCCC--ceE
Q 002196 491 VWDAVT------GT-KQYIFEGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGS--RVDYDAPGH--SST 555 (954)
Q Consensus 491 iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~--~~~~~~~~~--~v~ 555 (954)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+.. +.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999986 53 45666666666654 356555 455544442 3699999987642 233333333 677
Q ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE----CCCeEEEEECCCCc
Q 002196 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN 631 (954)
Q Consensus 556 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~ 631 (954)
.++|++++.++++...+ +...|.+||+.+++.+..+..+.. .+..+.++|+++.++... ..+.|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~~--g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLHD--VKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEET--TEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEEC--CEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88998776666666543 355688999878887777777643 788889999987666442 45799999998877
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.58 E-value=1e-11 Score=131.07 Aligned_cols=282 Identities=9% Similarity=-0.023 Sum_probs=191.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
+...+.+++++++|+ +.++...++.|.+||.. ++.... ....+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 446899999999998 65655557899999988 543321 0122446799999999999888
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE-eccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~ 513 (954)
+...++.|..|+.. ++ .... .+......+..+++.+++. ++++...++.|..||. +++.... ...+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 77668889999876 33 2211 2223455789999999987 6777777889999998 6554432 23345567888
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
++.+++ .+.++...++.|..||. +...... .......+..++++++|+..++... ...|..||. +++....
T Consensus 147 ~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TLGSDN--ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEF 218 (299)
T ss_dssp EECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred EEcCCC--CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEE
Confidence 887554 56666666789999998 4433322 2223446889999999986555422 335999998 6664432
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
........+..++++++|+.+++...++.|..||. ++. +..+....+...+.++++ ++|.+.++.. .+.+..++..
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 12212236889999999986666657889999998 443 344433333456889999 8888777654 5677777776
Q ss_pred CC
Q 002196 673 DG 674 (954)
Q Consensus 673 ~~ 674 (954)
++
T Consensus 295 ~~ 296 (299)
T 2z2n_A 295 KD 296 (299)
T ss_dssp --
T ss_pred cc
Confidence 54
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=1.9e-12 Score=139.16 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=177.3
Q ss_pred ceeeeeeCCCCCcceeecCCCC----CcceEEEe-cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeE
Q 002196 324 NILPVAYTPQSLGQSSYSTDDL----PKTVVMTL-NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (954)
Q Consensus 324 ~i~~~~~s~~g~~~~~~~~~~~----~~~~~~~~-~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~ 398 (954)
.|.+++|++++..++....+.. .......+ .+...+.+++|+|+|+ +++++..++.|.+||..+++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~---- 81 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP---- 81 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE----
T ss_pred ccceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE----
Confidence 3456778888777665533322 12233333 3667789999999998 778888899999999988765431
Q ss_pred EEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC
Q 002196 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474 (954)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 474 (954)
...+...+.+++|+|+|+++++...+ +.|.+||.+++...... .-..+...+.+++++|+
T Consensus 82 ---------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 82 ---------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp ---------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTT
T ss_pred ---------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCC
Confidence 11355789999999999988877666 68999998876543211 11124457999999999
Q ss_pred CCceEEEEEcC------CCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEE-EEEecCCeEEEEeCCCC-CceeE
Q 002196 475 NKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNL-GSRVD 546 (954)
Q Consensus 475 ~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~-~~~~~ 546 (954)
|+ ++++... .+.|..||..+++.... ..+...+..++|++++ +.+ ++.+.++.|.+||+++. .....
T Consensus 146 g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 146 GG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp SC--EEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred CC--EEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCccc
Confidence 97 5555543 35677777665554332 2233457788887765 544 55556889999998643 22211
Q ss_pred ------eeCC-CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC-----CCeEEEEEeCCCCEEE
Q 002196 547 ------YDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK-----RSVGVVQFDTTKNRFL 614 (954)
Q Consensus 547 ------~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~ 614 (954)
.... ...+..++++++|+.+++... +..|.+||. +++.+..+..... ..+.+++|+|+++.|+
T Consensus 221 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 221 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp EEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred ccceEEEecCCCCCCCceEECCCCCEEEEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence 1111 136788999999987766543 234999998 5666666654432 1478899999987777
Q ss_pred EEECC
Q 002196 615 AAGDE 619 (954)
Q Consensus 615 ~~~~d 619 (954)
.++.+
T Consensus 296 v~~~~ 300 (333)
T 2dg1_A 296 ICSND 300 (333)
T ss_dssp EEEEC
T ss_pred EEeCc
Confidence 66654
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=1.5e-12 Score=138.05 Aligned_cols=311 Identities=7% Similarity=-0.037 Sum_probs=201.5
Q ss_pred ccCCccEEEEEec-----CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC------CCCceEEEEEeCC
Q 002196 517 HKENIQFIFSTAT-----DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN------KEGESYLVEWNES 585 (954)
Q Consensus 517 ~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~ 585 (954)
|.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++..- +..+..|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4455567777655 679999999988877666654444 4 9999999999887520 1114569999999
Q ss_pred CCeEEEEEecCC------CCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 586 EGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 586 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
+++.+..+.... ......+.|+|||++++++.. ++.|.++|+.+++.+.++...+ . ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999988876432 113556899999999998873 6899999999999999997532 1 22333345677
Q ss_pred EEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCC
Q 002196 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT 737 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (954)
++.+.||.+.+.++.+..+......
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~------------------------------------------------------- 217 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT------------------------------------------------------- 217 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC-------------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec-------------------------------------------------------
Confidence 7888899999988876212211000
Q ss_pred CCcccccccccccccccccccccCCCceeEEecCCCCCccce-EEEEEe-cCCceEEEeecCCeEEEeeccCCCCCCCCc
Q 002196 738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV-SRLIYT-NSGLAILALASNAVHKLWKWPRNERNSTGK 815 (954)
Q Consensus 738 ~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s-pdg~~l~~~~~dg~v~lw~~~~~~~~~~g~ 815 (954)
.+++.. ...+ ....|. ++|+.++ .+.+|.+.+.|+........
T Consensus 218 --------------~~~~~~------------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~-- 262 (386)
T 3sjl_D 218 --------------EVFHPE------------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL-- 262 (386)
T ss_dssp --------------CCCSCT------------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC--
T ss_pred --------------ceeccc------------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee--
Confidence 000000 0000 012443 6775444 55578888887653221100
Q ss_pred ccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-----------CCeEEEEEcccccEEEeeCCCC
Q 002196 816 ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMTTFMPPP 884 (954)
Q Consensus 816 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-----------dg~i~iwd~~~~~~~~~~~~h~ 884 (954)
.-|++-.-..+. .+ -.......++++++++.++... .++|.+.|+.+++.++.+.. .
T Consensus 263 -------~~~~~~~~~~~~---~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g 330 (386)
T 3sjl_D 263 -------PAVEALTEAERA---DG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-G 330 (386)
T ss_dssp -------CCEESSCHHHHH---TT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-E
T ss_pred -------cceecccccccc---cc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-C
Confidence 001100000000 00 0123444678899999888763 14699999999999998873 2
Q ss_pred CCeeEEEecCCCCc-eEEEE-ecCccEEEEeccccceEEEecCCccceeEEEEecC
Q 002196 885 PAATFLAFHPQDNN-IIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938 (954)
Q Consensus 885 ~~v~~l~~sp~d~~-~lasg-s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 938 (954)
..+..|+|++ |++ +|++. ..++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 3688999999 775 55554 45899999999999999988733 33456788877
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2.4e-13 Score=161.78 Aligned_cols=249 Identities=11% Similarity=-0.050 Sum_probs=165.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEE-----cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCe-
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAY-----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV- 488 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~- 488 (954)
.+|...+..++|||||++||.+. .+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 45667899999999999999543 346899999999875411 011111 126899999999 5777777665
Q ss_pred ------------EEEEECCCCc----eEEEeccCCCCeEEEeeeccCCccEEEEEecCC----eEEEEeCCCCCceeEee
Q 002196 489 ------------IKVWDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATDG----KIKAWLYDNLGSRVDYD 548 (954)
Q Consensus 489 ------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~ 548 (954)
|++|++.++. ++.....|...+..+.|++++ ++|+..+.++ .|.+|+..+.. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999999876 333334455678888888766 6777766555 56677654433 33333
Q ss_pred CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE---EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 549 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
.+...+....+ ++|. ++..+.....+..|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 33444555556 6777 665554333466799999987653 333333324367788888 66778888889988887
Q ss_pred ECC-CCceeEEEecCCCCCCcceEEECCCCCEEEEEe----CCCcEEEEEccCCC
Q 002196 626 DMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVST----NDNGIKILANADGI 675 (954)
Q Consensus 626 d~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----~dg~i~iwd~~~~~ 675 (954)
.+. +++....+..+. ...+..++++|++..++... ..+.|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 355555554331 34577888999998776433 24789999998873
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=9.1e-13 Score=138.93 Aligned_cols=237 Identities=11% Similarity=0.060 Sum_probs=167.3
Q ss_pred CCCCCCeEEEEEccCCC-EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 415 SDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++++++|+ ++++...++.|.+||
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEEc
Confidence 34556788999999998 7777778899999999876 33 4556777899999999998 677777789999999
Q ss_pred CCCCceEEEeccC----CCCeEEEeeeccCCccEEEEE----e-------------cCCeEEEEeCCCCCceeEeeCCCC
Q 002196 494 AVTGTKQYIFEGH----ESPVYSICPHHKENIQFIFST----A-------------TDGKIKAWLYDNLGSRVDYDAPGH 552 (954)
Q Consensus 494 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~----s-------------~dg~i~iwd~~~~~~~~~~~~~~~ 552 (954)
..+++........ ...+..+++.+++ .++++. + ..+.|..++.. ...........
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G--~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~ 172 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG--SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV 172 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTS--CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCC--CEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCC
Confidence 9888765443221 2345667777654 677763 2 12455555544 34444444555
Q ss_pred ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCC-CCeE---EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
....++|+|+|+.+++.+. ...|.+||+. ++.. ...+ ......+..++++++|+.+++. ++.|.+||..
T Consensus 173 ~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 7789999999999844322 3459999986 5554 3344 2223356789999999866666 7899999986
Q ss_pred CCceeEEEecCCCCCCcceEEE-CCCCCEEEEEeCCCcEEEEEccCC
Q 002196 629 NVNLLASIDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++.+..+..+ .. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 246 -g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 246 -GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp -SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred -CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 7777777755 33 889999 68999888888763 444455444
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.7e-11 Score=132.56 Aligned_cols=279 Identities=9% Similarity=-0.044 Sum_probs=182.0
Q ss_pred EcCCCCeEEEEEE-cCC---eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE--
Q 002196 364 FHPVQQILLVVGT-NMG---DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-- 437 (954)
Q Consensus 364 ~sp~g~~ll~~g~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~-- 437 (954)
..|++++++++-. ..+ .|.+||..+++.+.+ +.....+ .+++||||++++++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~~ 86 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALASTS 86 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEecc
Confidence 3466664444332 222 889999999887643 1111233 899999999999886
Q ss_pred --------cCCEEEEEEeeCCcceeeeeee-ec---ccCCEEEEEEecCCCceEEEEEc--CCCeEEEEECCCCceEEE-
Q 002196 438 --------SKHIVHLYTYHGGDELRNHLEI-EA---HVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYI- 502 (954)
Q Consensus 438 --------~dg~i~iwd~~~~~~~~~~~~~-~~---h~~~v~~~~~s~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~- 502 (954)
.++.|.+||..+.+.+.....- .. +......++|+|||++ ++.++ .++.|.++| .+++.+..
T Consensus 87 ~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~~~ 163 (373)
T 2mad_H 87 FSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDDQL 163 (373)
T ss_pred ccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEeEE
Confidence 3678999999887765532211 00 0123458999999995 55444 258899999 99998877
Q ss_pred eccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-----CCCCc-eEEEEECCCCCEEEEEEeCCCCc
Q 002196 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHS-STMMAYSADGARLFSCGTNKEGE 576 (954)
Q Consensus 503 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~g~~l~~~~~~~~~~ 576 (954)
+... .. +.+.+.++ ..+++.+.||.+.++|. +.+...... ....+ .....+.+++..++..+..
T Consensus 164 i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---- 233 (373)
T 2mad_H 164 LSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS---- 233 (373)
T ss_pred cCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC----
Confidence 6532 21 33444444 45677788999999999 655442221 11112 1234566666655544432
Q ss_pred eEEEEEeCCCCe--EEEEEecCC---------CCCeEEEEEeCCCCEEEEEEC----------CCeEEEEECCCCceeEE
Q 002196 577 SYLVEWNESEGA--VKRTYHGLG---------KRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLAS 635 (954)
Q Consensus 577 ~~i~iwd~~~~~--~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~ 635 (954)
+.+.+.|..++. .+..+.... ......+.++|+++.++++.. ++.|.++|..+++.+..
T Consensus 234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 248888886542 223322110 112344788999988888653 35899999999999999
Q ss_pred EecCCCCCCcceEEECCCCC-EEEEEe-CCCcEEEEEccCCCeeEEE
Q 002196 636 IDADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRT 680 (954)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 680 (954)
+.... ...+++|+|||+ .++++. .++.|.+||..++ +.++.
T Consensus 314 i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 314 ISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 96532 468999999999 777776 4899999999998 55554
No 193
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.56 E-value=9.4e-10 Score=132.98 Aligned_cols=514 Identities=9% Similarity=0.038 Sum_probs=294.2
Q ss_pred cceeeeeeCCCCCcceeecCCCC---CcceEEEecC---------CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCc
Q 002196 323 VNILPVAYTPQSLGQSSYSTDDL---PKTVVMTLNQ---------GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE 390 (954)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~~---~~~~~~~~~h---------~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~ 390 (954)
+.|.++.-.++|. ++.+..+++ .+.....+.+ ...|.++...++|. + -.|+.+| +..||..+++
T Consensus 43 n~v~~I~qD~~G~-lWigT~~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~-l-WigT~~G-l~~yd~~~~~ 118 (795)
T 4a2l_A 43 STVFSIDQDKRGN-MWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGR-V-WIGTRDG-LSRYDEEKDI 118 (795)
T ss_dssp SCEEEEEECTTSC-EEEEETTEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSC-E-EEEESSC-EEEEETTTTE
T ss_pred ceeEEEEEcCCCC-EEEeecCcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCC-E-EEEeCCc-hheeCCCCCe
Confidence 3566777777764 333333322 2333444432 35699999999998 3 3455544 8999988765
Q ss_pred eeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecc-cCC-EEE
Q 002196 391 RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-VGS-VND 468 (954)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~ 468 (954)
...... . .......|.++...++|++.+. +. +.+..|+..+++... . ...+ ... |.+
T Consensus 119 f~~~~~------~----------~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~ 177 (795)
T 4a2l_A 119 FQNFFY------E----------KNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESKFID-D--SFSTAMHKTIAS 177 (795)
T ss_dssp EEEECC------E----------ETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTEEEC-S--SSCHHHHTCCEE
T ss_pred EEeccc------c----------ccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCEEEe-c--cCCCCCCcceEE
Confidence 432100 0 0000012889998888876654 44 458889877654221 1 0111 123 888
Q ss_pred EEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe-ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 469 ~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
+...+++. +..++.++-+..||..+++..... ......|.++.....+ .+..++.++-+..||..+.......
T Consensus 178 i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 178 TLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT---RIWVATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp EEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT---EEEEEEBSSCEEEEETTTTEEEEEC
T ss_pred EEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC---CEEEEECCCCeEEEeCCCCeEEEee
Confidence 88888876 445666556889998777654321 1234567777765433 4666666555888987664332221
Q ss_pred eC-------CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec------CCCCCeEEEEEeCCCCEEE
Q 002196 548 DA-------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG------LGKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 548 ~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~ 614 (954)
.. ....|.++...++|...+.. .++ +.+||..++........ .....|.++...++|. |.
T Consensus 252 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-----l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 252 HSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-----LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp CCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-----EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred cCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-----hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 11 23468999999888765543 322 88999887765443221 1223688898888876 55
Q ss_pred EEECCCeEEEEECCCCceeEEEecC-----CCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEecccc----
Q 002196 615 AAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT---- 685 (954)
Q Consensus 615 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---- 685 (954)
.|+.++-|..|+..++... .+... -....|.++...++|.+. .|+.++-|..|+..++ .. ..+....
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~-~~-~~~~~~~~~~~ 400 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQ-RF-TSYTLQEDESA 400 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTC-CE-EEECCC-----
T ss_pred EEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCC-cE-EEEecCCCCcc
Confidence 5667677888887654432 22211 113458889888888655 4777778999988765 22 2221100
Q ss_pred -----ccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccccc
Q 002196 686 -----FDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT 760 (954)
Q Consensus 686 -----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~ 760 (954)
..|..+ .. ..++..+-.|+.++.+..|+..+
T Consensus 401 ~~l~~~~v~~i------------------------------------~~------d~~g~~lWigt~~~Gl~~~d~~~-- 436 (795)
T 4a2l_A 401 RGIGSNNIKAV------------------------------------YV------DEKKSLVYIGTHAGGLSILHRNS-- 436 (795)
T ss_dssp -CCSCSCEEEE------------------------------------EE------ETTTTEEEEEETTTEEEEEETTT--
T ss_pred cCCCCccEEEE------------------------------------EE------cCCCCEEEEEeCcCceeEEeCCC--
Confidence 011110 00 01233133444445577776543
Q ss_pred CCCceeEEecC-CCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCC
Q 002196 761 EPSQCRSLRLP-DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (954)
Q Consensus 761 ~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~ 839 (954)
.....+... .......|.++...++|...+.. .+| +..|+..+..+. .+.... ...
T Consensus 437 --~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~------------~~~~~~-------~~~ 493 (795)
T 4a2l_A 437 --GQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFT------------TIEKEK-------DGT 493 (795)
T ss_dssp --CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEE------------ECCBCT-------TCC
T ss_pred --CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEE------------Eccccc-------ccc
Confidence 122222210 11234678899988888855544 444 666654321110 000000 000
Q ss_pred CCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeC-------CCCCCeeEEEecCCCCceEEEEecCccEEEE
Q 002196 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM-------PPPPAATFLAFHPQDNNIIAIGMEDSSIQIY 912 (954)
Q Consensus 840 ~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~d~~~lasgs~dg~i~iw 912 (954)
.-....|.++...++|.+.+... +.+..||..+++. .+. .+...|.++...+ +|++.+. +.. -+..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~-~g~lWig-T~~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS-NGIIWVG-TRE-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT-TSCEEEE-ESS-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC-CCCEEEE-eCC-CceeE
Confidence 00346789999999998777665 6688999877665 332 1234689999988 7876654 334 58889
Q ss_pred eccccceEEEec---C-CccceeEEEEecCCCeEEEecCCcceec
Q 002196 913 NVRVDEVKTKLK---G-HQKRITGLAFSNTLNVLVSSGADSQVRN 953 (954)
Q Consensus 913 d~~~~~~~~~~~---~-h~~~V~~l~~s~dg~~l~s~s~Dg~I~i 953 (954)
|..+++... +. + ....|.++...++|.+.+++ ..|-.++
T Consensus 568 d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~ 610 (795)
T 4a2l_A 568 NEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCF 610 (795)
T ss_dssp ETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred CCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-CCceEEE
Confidence 987765433 32 2 23468889888888766655 5665554
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=2.3e-12 Score=133.18 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=176.8
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCC-CCeEEEEEccCCCEEEEEEcCCEEEEEEeeC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~ 449 (954)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 889999999999999999987643 22233 4688999999999888 45788999999 7
Q ss_pred Ccceeeeeeeecc-cCCEEEEEEecCCCceEEEEEcC-CCeEEEEECCCCceEEEecc------CCCCeEEEeeeccCCc
Q 002196 450 GDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYIFEG------HESPVYSICPHHKENI 521 (954)
Q Consensus 450 ~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~ 521 (954)
|+.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......+++. .+|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~--~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN--KKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC--TTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC--CCC
Confidence 77666 34433 34688999999999 6777666 788888884 7887776642 11223334443 455
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC---
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--- 598 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--- 598 (954)
+++++...++.|..||.+ ++....+... ..+.++.+.++|+.++++.. ...|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999987 7777776654 34567788999998887653 33599999999999999874321
Q ss_pred --CCeEEEEEeCCCCEEEEEECC--------CeEEEEEC-CCCceeEEEecCCCCCCcceEE
Q 002196 599 --RSVGVVQFDTTKNRFLAAGDE--------FMIKFWDM-DNVNLLASIDADGGLQASPCIR 649 (954)
Q Consensus 599 --~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 649 (954)
..+..+...++|+.+++.... +..+++.+ .+++.+.++........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136778888999888887421 23355555 4678888877665555666654
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=4.2e-12 Score=135.60 Aligned_cols=276 Identities=6% Similarity=-0.018 Sum_probs=182.2
Q ss_pred CCeEEEEeCCCCCceeEee------CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEE
Q 002196 530 DGKIKAWLYDNLGSRVDYD------APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (954)
Q Consensus 530 dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 603 (954)
++.|.+||..+.+....+. ..+.....+.+. +..++++... ...|.+||..+++.+.++... .....
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~---~~~v~viD~~t~~~~~~i~~~--~~p~~ 88 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN---SHVIFAIDINTFKEVGRITGF--TSPRY 88 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG---GTEEEEEETTTCCEEEEEECC--SSEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC---CCEEEEEECcccEEEEEcCCC--CCCcE
Confidence 7899999998765443221 112345677773 4455555432 346999999999998888643 26788
Q ss_pred EEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCC---CCCcceEEECCCCCEEEEEe-CCCcEEEEEccCCCeeE
Q 002196 604 VQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGG---LQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLL 678 (954)
Q Consensus 604 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 678 (954)
+++++++. ++++. .++.|.+||..+++....+..... ......+++ .+++++++.. .++.|.+||+.++ +..
T Consensus 89 i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~-~~~ 165 (328)
T 3dsm_A 89 IHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD-KVV 165 (328)
T ss_dssp EEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-EEE
T ss_pred EEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-eEE
Confidence 99999884 55555 889999999999998887765320 113457777 3444444433 4889999999887 443
Q ss_pred EEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 679 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
..+..
T Consensus 166 ~~i~~--------------------------------------------------------------------------- 170 (328)
T 3dsm_A 166 DELTI--------------------------------------------------------------------------- 170 (328)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EEEEc---------------------------------------------------------------------------
Confidence 33311
Q ss_pred ccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecC----------CeEEEeeccCCCCCCCCcccCCCCccccCCC
Q 002196 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN----------AVHKLWKWPRNERNSTGKATTNQAPQLWQPP 828 (954)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d----------g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~ 828 (954)
......++++|+|+.+++...+ +.+.++|. .
T Consensus 171 -----------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~----------------------~ 211 (328)
T 3dsm_A 171 -----------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA----------------------E 211 (328)
T ss_dssp -----------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET----------------------T
T ss_pred -----------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC----------------------C
Confidence 0112346778888866655543 56666653 3
Q ss_pred Cccccccc-CCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEe--eCCCCCCeeEEEecCCCCceEEEE--
Q 002196 829 SGILMTND-ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIG-- 903 (954)
Q Consensus 829 ~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~d~~~lasg-- 903 (954)
+++..... +. .......++|+||+++|.++.. .|.+||..+++.... +..+......++++|++++++++.
T Consensus 212 t~~v~~~~~~~---~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 212 TFTVEKQFKFK---LGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp TTEEEEEEECC---TTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred CCeEEEEEecC---CCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccc
Confidence 33332111 11 1236789999999999887755 999999988876421 222245689999999667777776
Q ss_pred --ecCccEEEEeccccceEEEecCCccceeEEEE
Q 002196 904 --MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAF 935 (954)
Q Consensus 904 --s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 935 (954)
..++.|.+||.+ |+.+.++... ..-..++|
T Consensus 288 ~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp TSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred ccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 678999999998 9888887632 23345555
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=6e-11 Score=128.28 Aligned_cols=294 Identities=6% Similarity=-0.075 Sum_probs=186.0
Q ss_pred CCccEEEEEec--CC---eEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC------CCCceEEEEEeCCCC
Q 002196 519 ENIQFIFSTAT--DG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN------KEGESYLVEWNESEG 587 (954)
Q Consensus 519 ~~~~~l~s~s~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~ 587 (954)
.++++++.... .. .|.+||..+.+....+.... .. .++++|||++++++... +..+..|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 33355655543 22 78999998877665554433 33 99999999999988531 112456899999998
Q ss_pred eEEEEEecC-C-----CCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCceeEE-EecCCCCCCcceEEECCCC-CEE
Q 002196 588 AVKRTYHGL-G-----KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNKEG-ILL 657 (954)
Q Consensus 588 ~~~~~~~~~-~-----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l 657 (954)
+.+..+... . ......+.++|||+++++++. ++.|.++| .+++.+.. +... .++.+.|++ +.+
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------~~~~~~~~~~~~~ 180 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------TCYHIHPGAPSTF 180 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC------ceEEEEeCCCceE
Confidence 888776543 0 113457899999999999874 57899999 99998877 6532 134555654 456
Q ss_pred EEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCC
Q 002196 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT 737 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (954)
++.+.||.+.+++. ++. .........
T Consensus 181 ~~~~~dg~~~~vd~-~g~-~~~~~~~~~---------------------------------------------------- 206 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGG-AAGAGLVGA---------------------------------------------------- 206 (373)
T ss_pred EEEcCCCCEEEEEC-CCc-EEEEEeccc----------------------------------------------------
Confidence 66778999999999 763 221110000
Q ss_pred CCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCccc
Q 002196 738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKAT 817 (954)
Q Consensus 738 ~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~ 817 (954)
++ .. .........+.+++..++..+..+.+.+.|+......
T Consensus 207 ---------------~~-~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~------ 247 (373)
T 2mad_H 207 ---------------ML-TA-----------------AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT------ 247 (373)
T ss_pred ---------------cc-cC-----------------CcceeecceeEecCCEEEEEcCCceEEEEeccCCcce------
Confidence 00 00 0000112345555555544445667777665421100
Q ss_pred CCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-----------CCeEEEEEcccccEEEeeCCCCCC
Q 002196 818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMTTFMPPPPA 886 (954)
Q Consensus 818 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-----------dg~i~iwd~~~~~~~~~~~~h~~~ 886 (954)
.+.-|+..+........ .......++++||++.+.++. ++.|.++|..+++.+.++.. ...
T Consensus 248 ---v~~~~~~~~~~~~~~~~----~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~ 319 (373)
T 2mad_H 248 ---NKAPIDALSGGRKADTW----RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHD 319 (373)
T ss_pred ---EeeeeeecCCcccccce----ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCC
Confidence 00112211111110000 122344578999999887753 24799999999999998863 335
Q ss_pred eeEEEecCCCCc-eEEEEe-cCccEEEEeccccceEEEe
Q 002196 887 ATFLAFHPQDNN-IIAIGM-EDSSIQIYNVRVDEVKTKL 923 (954)
Q Consensus 887 v~~l~~sp~d~~-~lasgs-~dg~i~iwd~~~~~~~~~~ 923 (954)
..+++|+| ||+ +++++. .++.|.+||+.+++.+.++
T Consensus 320 p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 320 VDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 89999999 888 777776 5899999999999998884
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=1.9e-12 Score=134.39 Aligned_cols=241 Identities=9% Similarity=0.003 Sum_probs=164.7
Q ss_pred CeeEEEEcCCCCeEEE-EEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 358 AVKSMDFHPVQQILLV-VGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 666 546788999999766543210 12233567889999999966655
Q ss_pred EcCCEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEee
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 515 (954)
. ++.|.+||..+.... .+. .....+..+++.++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 4 889999998765422 122 2335689999999998 6777778899999986655443322233345677888
Q ss_pred eccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec
Q 002196 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 595 (954)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 595 (954)
.+++ .++++...++.|.+||................+..++++++|..+++... ...|.+||........ ...
T Consensus 158 ~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DNSG--NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CTTC--CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eCCC--CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 7644 66677667889999998765543332223357889999999965555432 2349999987654433 222
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce
Q 002196 596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (954)
Q Consensus 596 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 632 (954)
.....+..++++++|+.+++...++.|+++++...+.
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1213688999999999888888999999999876543
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=5.8e-12 Score=133.63 Aligned_cols=284 Identities=13% Similarity=0.100 Sum_probs=189.7
Q ss_pred EEEcCCCCeEEEEEEc----CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 362 MDFHPVQQILLVVGTN----MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 362 ~~~sp~g~~ll~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
....|++++++++-.. ++.|.+.|..+++.+.+.. .-..+ .+++||||++++++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P--~va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP--NPVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC--EEEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC--cEEECCCCCEEEEEc
Confidence 3446788866666554 6899999999998876421 11223 399999999988775
Q ss_pred ----------cCCEEEEEEeeCCcceeeeeeeec-----ccCCEEEEEEecCCCceEEEEEc--CCCeEEEEECCCCceE
Q 002196 438 ----------SKHIVHLYTYHGGDELRNHLEIEA-----HVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 438 ----------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~~~l~s~~--~dg~i~iwd~~~~~~~ 500 (954)
.++.|.+||..+++.+..+. +.. .......++|+|||++ ++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEE
Confidence 36789999999988766332 111 0124567999999996 44443 3789999999999999
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC-CceeEeeC----CCCce-EEEEE-CCCCCEEEEEEeCC
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDA----PGHSS-TMMAY-SADGARLFSCGTNK 573 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~----~~~~v-~~~~~-s~~g~~l~~~~~~~ 573 (954)
.++.... .. .+.|.+. ..+++.+.||.+.+.++... +....... ....+ ....| .++|+++++ +.
T Consensus 174 ~tI~v~g--~~--~~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v-s~-- 245 (386)
T 3sjl_D 174 RMLDVPD--CY--HIFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TY-- 245 (386)
T ss_dssp EEEECCS--EE--EEEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE-BT--
T ss_pred EEEECCC--cc--eeecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEE-eC--
Confidence 8885322 11 1223333 56778888999999998763 33221111 11122 12355 367766554 33
Q ss_pred CCceEEEEEeCCCCe--EEEEEe---------cCCCCCeEEEEEeCCCCEEEEEEC----------CCeEEEEECCCCce
Q 002196 574 EGESYLVEWNESEGA--VKRTYH---------GLGKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNL 632 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~--~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~ 632 (954)
.+.+++.|..++. ....+. +........++++++++.++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 2359999987653 333332 000012334778999988888642 25799999999999
Q ss_pred eEEEecCCCCCCcceEEECCCCC-EEEEE-eCCCcEEEEEccCCCeeEEEecc
Q 002196 633 LASIDADGGLQASPCIRFNKEGI-LLAVS-TNDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~s~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
+..+... ..+..+++++|++ +|+++ ..++.|.++|..++ +.++.+..
T Consensus 324 ~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~ 372 (386)
T 3sjl_D 324 LAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 372 (386)
T ss_dssp EEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecC
Confidence 9998764 2578999999996 66664 45899999999998 67776654
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=2.1e-12 Score=154.85 Aligned_cols=247 Identities=13% Similarity=0.066 Sum_probs=162.4
Q ss_pred CCCCCeEEEEEccCCCEEEEEEcC-----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC---
Q 002196 416 DYTASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--- 487 (954)
Q Consensus 416 ~h~~~V~~l~~spdg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--- 487 (954)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| +. |+.++.|+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~~--l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-DA--LLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-SE--EEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-CE--EEEEEecCccc
Confidence 444578899999999999988654 4699999999876531 112222467899999 74 55555443
Q ss_pred -----------eEEEEECCCCce--EEEec--cCCCCeEEEeeeccCCccEEEEEecCC-----eEEEEeCCCC--Ccee
Q 002196 488 -----------VIKVWDAVTGTK--QYIFE--GHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDNL--GSRV 545 (954)
Q Consensus 488 -----------~i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~--~~~~ 545 (954)
.|++|++.++.. ...+. .+...+..+.|++++ ++|+..+.++ .|++||+.+. ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 499999987752 23333 333457788887655 7777776544 7999999876 3133
Q ss_pred EeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEE
Q 002196 546 DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (954)
Q Consensus 546 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 624 (954)
.+..+....... ++|+|+.|+..+..+.....|.+||+.++ .....+..+....+..+.++ ++..+++...|+..+|
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 333333334444 34899999888765444667999999875 23333333333356677777 5567777788887777
Q ss_pred EECC-CCceeEEEecCCCCCCcceEEECCCCCEEEEEe----CCCcEEEEEccCC
Q 002196 625 WDMD-NVNLLASIDADGGLQASPCIRFNKEGILLAVST----NDNGIKILANADG 674 (954)
Q Consensus 625 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~----~dg~i~iwd~~~~ 674 (954)
|.+. ++.....+..+. ...+..++++|+++.++... ..+.|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 6554 455566665422 34678899999987655332 2478999999887
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=1.1e-10 Score=123.00 Aligned_cols=280 Identities=10% Similarity=-0.021 Sum_probs=189.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
....+.++++.++|+ +.++...++.|.+||.. ++.... . +..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------E------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------E------------CCCCCCcceeEEECCCCCEEE
Confidence 346889999999998 66666668899999988 554321 0 122346789999999999877
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE-EeccCCCCeEEE
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSI 513 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~ 513 (954)
+...++.|..||.. ++.. . ..+......+.++++.+++. ++++...++.|..||.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 76667889999987 4432 1 12333446789999999988 67777778899999987 65543 233345567888
Q ss_pred eeeccCCccEEEEEecCCeEEEEeCCCCCceeE-eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 514 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
++.+++ .+.++...++.|..||. +...... .......+..++++++|...++... ...|.+||. ++.....
T Consensus 152 ~~d~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSDN--ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTTS--SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEE
T ss_pred EECCCC--CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEE
Confidence 877654 56666666788999988 3333221 2223346889999999976655432 335899998 5554433
Q ss_pred EecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEcc
Q 002196 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 593 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~ 672 (954)
........+.+++++++|+.+++...++.|..||. +++.. .+........+.+++++++|.+.++.. . .|..+++.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 22212236788999999986666666789999998 44433 333332345688999999998766554 4 67666653
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=1.3e-12 Score=155.59 Aligned_cols=248 Identities=9% Similarity=-0.073 Sum_probs=162.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcC----CeEEEEeCCCCcee-eeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNM----GDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~d----g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (954)
|...+.+++|||||++++++.+.+ .+|++||+.+++.+ .. .+... ....++|+||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 444789999999999666555444 47999999998754 10 01111 1267999999
Q ss_pred CCEEEEEEcCCE-------------EEEEEeeCCcce-eeeeeeecccCCEEEEEEecCCCceEEEEEcCCC----eEEE
Q 002196 430 GTLFGVAYSKHI-------------VHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR----VIKV 491 (954)
Q Consensus 430 g~~l~s~~~dg~-------------i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg----~i~i 491 (954)
|+.|+.++.|.. |++|++.++... ........|...+..+.|+|||+. |+.++.++ .|++
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988766 999999887632 111123345668899999999995 44444444 7777
Q ss_pred EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEe---cCCeEEEEeCCCCCc---eeEeeCC-CCceEEEEECCCCC
Q 002196 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS---RVDYDAP-GHSSTMMAYSADGA 564 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~-~~~v~~~~~s~~g~ 564 (954)
||..++.. ..+..+...+....+ +++ .+++... .++.|.+||+.+... ....... ...+..++|+ ++.
T Consensus 257 ~~~~~~~~-~~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKDF-RLLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSSC-EEEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCce-EEeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 77655543 444445555555554 333 4444443 257899999987653 2223222 3467788887 565
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE----CCCeEEEEECCCCce
Q 002196 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVNL 632 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 632 (954)
.+++...++ ...|.++++. +.....+..+....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 332 lv~~~~~dg--~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLKDA--TSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETT--EEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEECC--EEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 666655433 4456666764 5555666555333677788899987776433 357899999988774
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=4.7e-12 Score=131.44 Aligned_cols=239 Identities=7% Similarity=-0.038 Sum_probs=164.5
Q ss_pred CeEEEEEccCCCEEE-EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 420 SVNRVMWSPDGTLFG-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 420 ~V~~l~~spdg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
...+++++++|++++ +.+.++.|.+|+..++.... ....+...+.++++.++|+ ++++.. ++.|.+||...+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44678899999876654221 1122335688999999988 566666 8899999976654
Q ss_pred eEEEec-cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 499 KQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 499 ~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
. ..+. .....+.++++.+++ .++++...++.|.+|+..+.............+..++++++|+.+++... ..
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 233567888887644 67777777889999976554333222222336788999999985555432 33
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
.|.+||.............. ..+..++++++|..+++...++.|.+|+........ ... .+...+.+++++++|+++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEE
T ss_pred EEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEE
Confidence 59999988766543322222 368889999999777777778899999987654332 221 223467899999999988
Q ss_pred EEEeCCCcEEEEEccCC
Q 002196 658 AVSTNDNGIKILANADG 674 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~ 674 (954)
++...++.|++++....
T Consensus 249 v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEGGGTEEEEECCCGG
T ss_pred EEECCCCEEEEEcCCCc
Confidence 88888999999987654
No 203
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.46 E-value=7e-09 Score=125.33 Aligned_cols=484 Identities=8% Similarity=0.069 Sum_probs=275.4
Q ss_pred eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCC-CCC-eEEEEEccCCCEEEEE
Q 002196 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY-TAS-VNRVMWSPDGTLFGVA 436 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-V~~l~~spdg~~l~s~ 436 (954)
|.++...++|. +.+ |+. +.|.+||..+++.... ..++ ... |.++...++|++.+ +
T Consensus 133 i~~i~~d~~g~-lwi-~t~-~gl~~~~~~~~~~~~~-------------------~~~~~~~~~i~~i~~d~~g~lwi-g 189 (795)
T 4a2l_A 133 VNGIEEISPEQ-LLI-STP-EGLIMFDIKESKFIDD-------------------SFSTAMHKTIASTLYRQGDQIYI-G 189 (795)
T ss_dssp CCEEEEEETTE-EEE-EET-TEEEEEETTTTEEECS-------------------SSCHHHHTCCEEEEEEETTEEEE-E
T ss_pred EEEEEECCCCC-EEE-EEC-CceEEEECCCCEEEec-------------------cCCCCCCcceEEEEECCCCCEEE-E
Confidence 89999999997 433 444 4588999877643210 0001 123 88999888887655 5
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEecc-------CCCC
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-------HESP 509 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~ 509 (954)
+.++-+..|+..+++..... ...+...|.++...+++. +..|+.++-+.+||..+++....... ....
T Consensus 190 t~~~Gl~~~~~~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 190 TSTDGLYTYSITQKTFEKVI--PILGTKQIQAILQQSPTR---IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNY 264 (795)
T ss_dssp ESSSCEEEEETTTCCEEECC------CCCEEEEEEEETTE---EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred ECCCCEEEEeCCCCeEEEec--CCCCCCeeEEEEEcCCCC---EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence 66545888888766532210 112345788888888776 45555555589999877664433221 1356
Q ss_pred eEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee-------CCCCceEEEEECCCCCEEEEEEeCCCCceEEEEE
Q 002196 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------APGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (954)
Q Consensus 510 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 582 (954)
|.++.....+ .+..|+.+ -|.+||..+........ .....|.++...++|...+ ++.++. |..|
T Consensus 265 i~~i~~d~~g---~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~G----l~~~ 335 (795)
T 4a2l_A 265 IRSLAMDSQN---RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGG----LNYY 335 (795)
T ss_dssp EEEEEECTTS---CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSC----EEEE
T ss_pred EEEEEEcCCC---CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCC----eEEe
Confidence 8888765433 35556655 58888876544322211 1234799999999987555 443222 8888
Q ss_pred eCCCCeEEEEEe-----cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC------CCCCCcceEEEC
Q 002196 583 NESEGAVKRTYH-----GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD------GGLQASPCIRFN 651 (954)
Q Consensus 583 d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~s 651 (954)
+..++....... ......|.++...++|. |..|+.++-|..|+..++......... -....|.++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 876554322111 11223688888888776 455777777999998876544332111 113468889888
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCC
Q 002196 652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (954)
++|..|..|+.++-|..||..++ +. ..+......... ....++..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~-~~-~~~~~~~~~l~~---------------------------------~~v~~i~~ 459 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSG-QV-ENFNQRNSQLVN---------------------------------ENVYAILP 459 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTC-CE-EEECTTTSCCSC---------------------------------SCEEEEEE
T ss_pred CCCCEEEEEeCcCceeEEeCCCC-cE-EEeecCCCCcCC---------------------------------CeeEEEEE
Confidence 88885666787778999998876 22 222110000000 00000000
Q ss_pred CCCCCCCCcccccccccccccccccccccCCCceeEEecC---CCCCccceEEEEEecCCceEEEeecCCeEEEeeccCC
Q 002196 732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLP---DNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN 808 (954)
Q Consensus 732 ~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~ 808 (954)
..++...+... +.+..|+..+ .....+... .......|.++...++|...+... + -+..|+....
T Consensus 460 ----d~~g~lwigt~--~Gl~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~ 527 (795)
T 4a2l_A 460 ----DGEGNLWLGTL--SALVRFNPEQ----RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGL 527 (795)
T ss_dssp ----CSSSCEEEEES--SCEEEEETTT----TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETT
T ss_pred ----CCCCCEEEEec--CceeEEeCCC----CeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCC
Confidence 11233333332 3466666542 111111111 111346788999999998555444 4 4666665422
Q ss_pred CCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeC---C-CC
Q 002196 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM---P-PP 884 (954)
Q Consensus 809 ~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~---~-h~ 884 (954)
.+ .+....... .+ ....|.++..+++|.+.++..+ .+..||..+++.. .+. + ..
T Consensus 528 ~~-------------~~~~~~~~~---~l----~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~-~~~~~~gl~~ 585 (795)
T 4a2l_A 528 DI-------------QKASILPVS---NV----TKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIK-RYNTTNGLPN 585 (795)
T ss_dssp EE-------------EECCCSCSC---GG----GGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEE-EECGGGTCSC
T ss_pred eE-------------EEecCCCCC---CC----CCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEE-EeCCCCCCch
Confidence 11 000000000 01 3457889999999986665544 7888998765543 232 1 23
Q ss_pred CCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCc----cce--eEEEEecCCCeEEEecCCcceecC
Q 002196 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ----KRI--TGLAFSNTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~----~~V--~~l~~s~dg~~l~s~s~Dg~I~i~ 954 (954)
..|.++...+ +|++.+++ . +-|..|+.++++. ..+..+. ..+ .++...++|++ ..|+.+|-+++|
T Consensus 586 ~~i~~i~~d~-~g~lWi~t-~-~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l-~~g~~~Gl~~~~ 656 (795)
T 4a2l_A 586 NVVYGILEDS-FGRLWLST-N-RGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQM-YFGGINGITTFR 656 (795)
T ss_dssp SCEEEEEECT-TSCEEEEE-T-TEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCE-EEEETTEEEEEC
T ss_pred hheEEEEECC-CCCEEEEc-C-CceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeE-EEecCCceEEEc
Confidence 4688999988 78766654 3 4578889887653 3343221 222 46677788864 456777877664
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.4e-10 Score=120.53 Aligned_cols=275 Identities=12% Similarity=0.058 Sum_probs=183.5
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
...+.+++++++|+..++... ...|..||.. ++............+..+++.+++..+++...++.|..||.. +
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHK----ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETT----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECCCCCEEEEcCC----CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 457889999999987665432 3459999988 654432222222368889999999877777678899999987 5
Q ss_pred ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCC
Q 002196 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 710 (954)
+. ..+........+.++++.++|.++++...++.|..|+.. + +.. .+.
T Consensus 93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~-~~~---------------------------- 140 (300)
T 2qc5_A 93 GF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G-TIY-EYD---------------------------- 140 (300)
T ss_dssp CE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-CEE-EEE----------------------------
T ss_pred Ce-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C-CEE-Ecc----------------------------
Confidence 54 333332223567899999999888877667888888765 3 111 000
Q ss_pred CccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCce
Q 002196 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA 790 (954)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 790 (954)
+ + .....+..+++.++|+.
T Consensus 141 ---------------------------------------------~--------------~--~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 141 ---------------------------------------------L--------------P--NKGSYPAFITLGSDNAL 159 (300)
T ss_dssp ---------------------------------------------C--------------S--STTCCEEEEEECTTSSE
T ss_pred ---------------------------------------------C--------------C--CCCCCceeEEECCCCCE
Confidence 0 0 01234677889999985
Q ss_pred EEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-CCeEEEE
Q 002196 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLF 869 (954)
Q Consensus 791 l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-dg~i~iw 869 (954)
.++...++.+..|+.. +......... ....+..++++++|.+.++.. .+.|.+|
T Consensus 160 ~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 160 WFTENQNNSIGRITNT-----------------------GKLEEYPLPT--NAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEECCC-----------------------CcEEEeeCCC--CCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 5555556778777531 1111111111 345678999999998777666 6789999
Q ss_pred EcccccEEEe-eCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEE-EecCCccceeEEEEecCCCeEEEecC
Q 002196 870 NMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT-KLKGHQKRITGLAFSNTLNVLVSSGA 947 (954)
Q Consensus 870 d~~~~~~~~~-~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~s~s~ 947 (954)
|. +++.... +..+...+.++++++ +|+++++...++.|..||. +++... .+......+.+++++++|+++++..
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~- 290 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK- 290 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-
T ss_pred cC-CCcEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-
Confidence 98 5554433 334456789999999 8887776666789999998 455432 2343456789999999998777665
Q ss_pred Ccceec
Q 002196 948 DSQVRN 953 (954)
Q Consensus 948 Dg~I~i 953 (954)
.+.+++
T Consensus 291 ~~i~~~ 296 (300)
T 2qc5_A 291 CKIGKL 296 (300)
T ss_dssp SEEEEE
T ss_pred CceEEe
Confidence 355444
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=1.7e-11 Score=126.59 Aligned_cols=239 Identities=9% Similarity=0.017 Sum_probs=175.9
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeeccc-CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
.++.|++++.++.|.+||.++|+.+. .+..+. ..+.++.++|+|+ +++ +.++.|..||. +|+.+..+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w---~~~~~~~~~~~~~~~~pdG~--ilv--s~~~~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW---EYPLEKGWECNSVAATKAGE--ILF--SYSKGAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE---EEECCTTCCCCEEEECTTSC--EEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE---EeCCCccCCCcCeEECCCCC--EEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence 46789999999999999998998776 455554 4689999999998 566 45788999998 899999988653
Q ss_pred -CCeEEEeeeccCCccEEEEEec-CCeEEEEeCCCCCceeEeeCCC------CceEEEEECCCCCEEEEEEeCCCCceEE
Q 002196 508 -SPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPG------HSSTMMAYSADGARLFSCGTNKEGESYL 579 (954)
Q Consensus 508 -~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~g~~l~~~~~~~~~~~~i 579 (954)
..+.++.+.++ |+++++.+. ++.|..+|. +++....+.... .....+++.++|+++++... +..|
T Consensus 76 ~~~~~~~~~~~d--G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----~~~v 148 (276)
T 3no2_A 76 GCEMQTARILPD--GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----TSEV 148 (276)
T ss_dssp TCEEEEEEECTT--SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----TTEE
T ss_pred CccccccEECCC--CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----CCEE
Confidence 46777776654 478888877 778887875 444444433211 13455678999999987653 4469
Q ss_pred EEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC----CCCCcceEEECCCCC
Q 002196 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----GLQASPCIRFNKEGI 655 (954)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~ 655 (954)
..||.. |+.+.++.... ...++.+.++++.+++++.++.|..+|..+|+.+..+.... ....+..++..++|.
T Consensus 149 ~~~d~~-G~~~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEECCC-CCEEEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 999988 99999988753 45667788999999999888899999999999999986431 122367888899999
Q ss_pred EEEEEeCC--------CcEEEEEccCCCeeEEEecccc
Q 002196 656 LLAVSTND--------NGIKILANADGIRLLRTVESRT 685 (954)
Q Consensus 656 ~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~ 685 (954)
++++.+.. +..+++++....+.+..+....
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcc
Confidence 98887522 2345666633326666665433
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=3.4e-11 Score=130.36 Aligned_cols=295 Identities=7% Similarity=-0.004 Sum_probs=194.2
Q ss_pred CCccEEEEEec-C----CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC------CCCceEEEEEeCCCC
Q 002196 519 ENIQFIFSTAT-D----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN------KEGESYLVEWNESEG 587 (954)
Q Consensus 519 ~~~~~l~s~s~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~ 587 (954)
.++..++.... + +.|.++|..+.+....+.....+ .+.++|||++++++... +..+..|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 34455555544 2 69999999998877777655545 89999999999887631 112456999999999
Q ss_pred eEEEEEecC-C-----CCCeEEEEEeCCCCEEEEEEC--CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCC-CEEE
Q 002196 588 AVKRTYHGL-G-----KRSVGVVQFDTTKNRFLAAGD--EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-ILLA 658 (954)
Q Consensus 588 ~~~~~~~~~-~-----~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~ 658 (954)
+.+..+... . ......+.|+|||++++++.. ++.|.+.|+.+++.+..+...+ +....|++ +.++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEEE
Confidence 998887642 1 113456889999999999874 6799999999999999887532 13344433 5666
Q ss_pred EEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCC
Q 002196 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (954)
Q Consensus 659 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (954)
+.+.||.+.+.+..++ +......
T Consensus 234 ~~~~dG~~~~V~~~~~-~v~~~~~-------------------------------------------------------- 256 (426)
T 3c75_H 234 MNCRDGSLARVDFADG-ETKVTNT-------------------------------------------------------- 256 (426)
T ss_dssp EEETTSSEEEEECCTT-CCEEEEC--------------------------------------------------------
T ss_pred EEcCCCCEEEEECCCC-cEEEEee--------------------------------------------------------
Confidence 7778888888887444 2221110
Q ss_pred CcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccC
Q 002196 739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT 818 (954)
Q Consensus 739 ~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~ 818 (954)
.+++... ......+.|++++..++.....+.+.+.|+.......
T Consensus 257 -------------~~~~v~~-----------------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v------ 300 (426)
T 3c75_H 257 -------------EVFHTED-----------------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF------ 300 (426)
T ss_dssp -------------CCCSCTT-----------------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE------
T ss_pred -------------eeeccCC-----------------CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE------
Confidence 0111110 0001124567888777777777888887764321100
Q ss_pred CCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec-----------CCeEEEEEcccccEEEeeCCCCCCe
Q 002196 819 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMTTFMPPPPAA 887 (954)
Q Consensus 819 ~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s-----------dg~i~iwd~~~~~~~~~~~~h~~~v 887 (954)
+.-|.......+..-. .......++++||++++++.. +++|.+.|..+++.+.++... ...
T Consensus 301 ---~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P 372 (426)
T 3c75_H 301 ---RAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEI 372 (426)
T ss_dssp ---CCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred ---eeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCc
Confidence 0001111000000000 112233478999998777653 247999999999999998632 248
Q ss_pred eEEEecCCCCc-eEEEEe-cCccEEEEeccccceEEEe
Q 002196 888 TFLAFHPQDNN-IIAIGM-EDSSIQIYNVRVDEVKTKL 923 (954)
Q Consensus 888 ~~l~~sp~d~~-~lasgs-~dg~i~iwd~~~~~~~~~~ 923 (954)
..++|+| ||+ ++++.. .++.|.|+|+.+++.+.++
T Consensus 373 ~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 373 DSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999 888 787777 5899999999999999987
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=1.8e-11 Score=132.47 Aligned_cols=279 Identities=11% Similarity=0.107 Sum_probs=188.9
Q ss_pred CCCCeEEEEEEcC----CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE----
Q 002196 366 PVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY---- 437 (954)
Q Consensus 366 p~g~~ll~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~---- 437 (954)
|+++++.++...+ +.|.++|..+++.+.+..+ + ..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 4666565555544 7999999999988765221 1 234 799999999988876
Q ss_pred ------cCCEEEEEEeeCCcceeeeeeee--c---ccCCEEEEEEecCCCceEEEEEc--CCCeEEEEECCCCceEEEec
Q 002196 438 ------SKHIVHLYTYHGGDELRNHLEIE--A---HVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 438 ------~dg~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 504 (954)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+..+.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 46789999999988766332 21 0 1123567899999995 44444 36899999999999988876
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE----eeCCCCc-eEEEEECCCCCEEEEEEeCCCCceEE
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHS-STMMAYSADGARLFSCGTNKEGESYL 579 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i 579 (954)
.... ....+.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++..... +.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~----g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT----GKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT----SEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC----CcE
Confidence 4221 22334333 5667777888888888844433321 1111111 1235679998888776542 358
Q ss_pred EEEeCCCCeEE--EEEecC--C-------CCCeEEEEEeCCCCEEEEEEC----------CCeEEEEECCCCceeEEEec
Q 002196 580 VEWNESEGAVK--RTYHGL--G-------KRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 580 ~iwd~~~~~~~--~~~~~~--~-------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 638 (954)
.+.|....... ..+... . ......++++|+++.+++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 88998655422 111110 0 001223689999988777642 35899999999999999975
Q ss_pred CCCCCCcceEEECCCCC-EEEEEe-CCCcEEEEEccCCCeeEEEe
Q 002196 639 DGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 639 ~~~~~~v~~v~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~ 681 (954)
.. ....++|+|||+ +++++. .++.|.++|..++ +.++.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 42 468999999999 888887 5899999999999 566665
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=9.6e-12 Score=149.03 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=157.2
Q ss_pred CeeEEEEcCCCCeEEEEEEcCC----eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.+..++|||||++++++.+.+| +|++||+.+++.+.. ..+...+..++|+|| +.|
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CEE
Confidence 6889999999996665555444 599999999987542 001122357899999 999
Q ss_pred EEEEcCCE--------------EEEEEeeCCccee-eeeeeecccCCEEEEEEecCCCceEEEEEcC-----CCeEEEEE
Q 002196 434 GVAYSKHI--------------VHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----DRVIKVWD 493 (954)
Q Consensus 434 ~s~~~dg~--------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-----dg~i~iwd 493 (954)
+.++.++. |++|++.++.... .......+...+..+.|+|||+. |+..+. ...|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEEE
Confidence 98887653 8899987765321 11122233346889999999995 444443 34899999
Q ss_pred CCCC--ceEEEeccCCCCeEEEeeeccCCccEEEEEec----CCeEEEEeCCCCC-c-eeEeeCCCCceEEEEECCCCCE
Q 002196 494 AVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTAT----DGKIKAWLYDNLG-S-RVDYDAPGHSSTMMAYSADGAR 565 (954)
Q Consensus 494 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~-~~~~~~~~~~v~~~~~s~~g~~ 565 (954)
+.++ ++...+..+...+.... .+++ ..|+..+. ++.|.+||+.+.. . ...+..+...+..+.++ ++..
T Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~-~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~l 376 (741)
T 1yr2_A 301 VTNGKIGPVTALIPDLKAQWDFV-DGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRL 376 (741)
T ss_dssp EETTEECCCEEEECSSSSCEEEE-EEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEE
T ss_pred CCCCCCcccEEecCCCCceEEEE-eccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEE
Confidence 9887 41455555555555443 3444 56666665 3459999988742 2 22333333456677776 4445
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEE-E---CCCeEEEEECCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA-G---DEFMIKFWDMDNVN 631 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~ 631 (954)
+++...+ +...|.++++. +.....+..+....+..+.++|+++.++.. + ..+.|++||+.+++
T Consensus 377 v~~~~~d--g~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 377 FASYIHD--AKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEET--TEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEC--CEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5555443 34556777764 555566655433367888999998766533 2 45789999998876
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=1.1e-10 Score=124.12 Aligned_cols=243 Identities=12% Similarity=0.079 Sum_probs=163.4
Q ss_pred CCCeEEEEEccCCCEEEE-------EEcCCEEEEEEeeCCcceeeee-eeecccCCEEEEEEecC-CCceEEEEEcCCCe
Q 002196 418 TASVNRVMWSPDGTLFGV-------AYSKHIVHLYTYHGGDELRNHL-EIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRV 488 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s-------~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~~~~s~~-~~~~~l~s~~~dg~ 488 (954)
-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ ++ ++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 346689999999988887 5778999999987776432100 01125567999999999 65 344444 458
Q ss_pred EEEEECCCCceEEE-ecc----CCCCeEEEeeeccCCccEEEEEecC---------------CeEEEEeCCCCCceeEee
Q 002196 489 IKVWDAVTGTKQYI-FEG----HESPVYSICPHHKENIQFIFSTATD---------------GKIKAWLYDNLGSRVDYD 548 (954)
Q Consensus 489 i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~ 548 (954)
|.+||.. ++.... ... ....+.++++.+++ .++++...+ +.|..||.+ .. .....
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence 9999988 765433 221 12347788887654 566666554 567777655 32 22222
Q ss_pred CCCCceEEEEEC----CCCCEEEEEEeCCCCceEEEEEeCC-CCeE-----EEEEecCCCCCeEEEEEeCCCCEEEEEEC
Q 002196 549 APGHSSTMMAYS----ADGARLFSCGTNKEGESYLVEWNES-EGAV-----KRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 549 ~~~~~v~~~~~s----~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 618 (954)
........++++ |+++.++++... ...|.+||.. ++.. ...+..+....+..++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~---~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETP---TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETT---TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECC---CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 223356789999 999877666432 3458999976 4542 22222222025778999999998888878
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEE-EEeCCCcEEEEEccC
Q 002196 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANAD 673 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-s~~~dg~i~iwd~~~ 673 (954)
++.|.+||..+++.+..+..+ ...+.+++++++++.|. +...++.|..|++..
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 899999999878877777654 34688999999999554 445567899998764
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=2e-10 Score=122.00 Aligned_cols=245 Identities=11% Similarity=0.086 Sum_probs=161.1
Q ss_pred CCCeeEEEEcCCCCeEEEE-------EEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc
Q 002196 356 GSAVKSMDFHPVQQILLVV-------GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (954)
-....+++|+++|+ ++++ +..++.|.+||..+++..... . ....++...+.++++++
T Consensus 17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------~---------~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC------K---------PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE------C---------CEETTEECCEEEEEECS
T ss_pred CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE------e---------cccCCCCCCCceEEEec
Confidence 34678999999997 6666 567889999998887654210 0 00122456799999999
Q ss_pred C-CCEEEEEEcCCEEEEEEeeCCcceee-eeeeec-ccCCEEEEEEecCCCceEEEEEcCC---------------CeEE
Q 002196 429 D-GTLFGVAYSKHIVHLYTYHGGDELRN-HLEIEA-HVGSVNDLAFSYPNKQLSVVTCGED---------------RVIK 490 (954)
Q Consensus 429 d-g~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~d---------------g~i~ 490 (954)
+ |+++++ +..+.|.+||.+ ++.... .....+ ....+.++++.++|+ ++++...+ +.|.
T Consensus 81 ~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 81 DANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp SSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred CCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEE
Confidence 9 665554 445578899987 553221 100011 224588999999997 56666554 5788
Q ss_pred EEECCCCceEEEeccCCCCeEEEeee----ccCCccEEEE-EecCCeEEEEeCCC-CCc-----eeEeeCCC-CceEEEE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPH----HKENIQFIFS-TATDGKIKAWLYDN-LGS-----RVDYDAPG-HSSTMMA 558 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s-~s~dg~i~iwd~~~-~~~-----~~~~~~~~-~~v~~~~ 558 (954)
.||.. ++..... .+......++++ +++ +.++. ...++.|.+||++. ... ...+..+. ..+..++
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 88865 5544332 233446778877 543 45544 45678999999762 221 11122222 4578899
Q ss_pred ECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC
Q 002196 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN 629 (954)
Q Consensus 559 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 629 (954)
++++|+.+++... ...|.+||..+++.+..+..+.. .+.+++++|+++.|++++ .++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999987776543 23499999987776666665544 788999999999665554 668899999864
No 211
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=3.3e-07 Score=110.35 Aligned_cols=488 Identities=10% Similarity=-0.003 Sum_probs=268.7
Q ss_pred CCeeEEEEcC--CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 357 SAVKSMDFHP--VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 357 ~~V~~~~~sp--~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..|+++.... +|. + ..|+.++-|..||..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~-l-wi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG-L-WVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE-E-EEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC-E-EEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 3689998888 776 3 4456455688999877654321 0000 0001235688888888877655
Q ss_pred EEEcCCEEEEEEeeCCcceeeeeee----ecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec------
Q 002196 435 VAYSKHIVHLYTYHGGDELRNHLEI----EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE------ 504 (954)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------ 504 (954)
|+.++-+..||..+++........ .-....|.++...+++. |..|+.+ -+.+||..+++......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN---IWIGTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC---EEEEeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 556655888887765422110000 01135688998888887 4445555 68999987765432211
Q ss_pred -cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEee--------------CCCCceEEEEECCCCCEEEEE
Q 002196 505 -GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--------------APGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 505 -~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------------~~~~~v~~~~~s~~g~~l~~~ 569 (954)
.....|.++....+ ..+..|+..+-|.++|..+........ .....|.++...++|..-+ +
T Consensus 254 ~l~~~~i~~i~~d~~---g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-g 329 (781)
T 3v9f_A 254 GALSSYIFSIKQLKD---NKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-G 329 (781)
T ss_dssp --CCCCEEEEEECTT---SEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-E
T ss_pred cccCceEEEEEECCC---CCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-E
Confidence 12356888775443 257777775678888876544222111 2234789999999887544 4
Q ss_pred EeCCCCceEEEEEeCCCCeEEEEEe--------cCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe-cCC
Q 002196 570 GTNKEGESYLVEWNESEGAVKRTYH--------GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-ADG 640 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 640 (954)
+.++. |..++..++....... ......|.++...++|. |..|+.++-|..||..++....... ...
T Consensus 330 t~~~G----l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 404 (781)
T 3v9f_A 330 TWGGG----INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENREL 404 (781)
T ss_dssp EBSSC----EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----C
T ss_pred ecCCe----EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCC
Confidence 43222 8888877654332211 11223688888877765 4556656668889986543321110 011
Q ss_pred CCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccc---cccceecchhccccCCccccccCCCCCcccccc
Q 002196 641 GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESR---TFDASRVASAAIVKAPAIGTFGSANANVGTSLG 717 (954)
Q Consensus 641 ~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (954)
....|.++...++|.+.+ |+.++-+..++..++ +. +.+... ...+..+
T Consensus 405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~~-~~~~~~~~~~~~v~~i-------------------------- 455 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK-KF-QIIELEKNELLDVRVF-------------------------- 455 (781)
T ss_dssp CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-EE-EECCSTTTCCCCEEEE--------------------------
T ss_pred CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-cE-EEeccCCCCCCeEEEE--------------------------
Confidence 234688888888887655 666667888887765 22 222110 0111110
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCC--CCCccceEEEEEecCCceEEEee
Q 002196 718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD--NLTAMRVSRLIYTNSGLAILALA 795 (954)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~ 795 (954)
.. ..++...+.. . +.+..|+..+.. ........ ......|.++...++|...+...
T Consensus 456 ------------~~----d~~g~lwigt-~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 456 ------------YE----DKNKKIWIGT-H-AGVFVIDLASKK----VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp ------------EE----CTTSEEEEEE-T-TEEEEEESSSSS----CCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred ------------EE----CCCCCEEEEE-C-CceEEEeCCCCe----EEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 00 0123333332 2 346666654311 11111110 11246788999999998555443
Q ss_pred cCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEccccc
Q 002196 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 875 (954)
Q Consensus 796 ~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~ 875 (954)
.+| +..|+.. ++..........-....|.++...++|.+.++..+|-|..||..+++
T Consensus 514 ~~G-l~~~~~~----------------------~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 514 GGG-VGIYTPD----------------------MQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp SSC-EEEECTT----------------------CCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC
T ss_pred CCC-EEEEeCC----------------------CCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCc
Confidence 355 4445432 11111100000013467889999999987766555555889987665
Q ss_pred EEEeeC---C-CCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEec---CCc-c--ceeEEEEecCCCeEEEe
Q 002196 876 TMTTFM---P-PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK---GHQ-K--RITGLAFSNTLNVLVSS 945 (954)
Q Consensus 876 ~~~~~~---~-h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~---~h~-~--~V~~l~~s~dg~~l~s~ 945 (954)
.. .+. + ....|.++...+ +|.+.++ +.+| |..++..+++. ..+. +-. . ...++...+||++++ |
T Consensus 571 ~~-~~~~~~gl~~~~i~~i~~d~-~g~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g 644 (781)
T 3v9f_A 571 YQ-VFQRKEGLPNTHIRAISEDK-NGNIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYF-G 644 (781)
T ss_dssp CE-EECGGGTCSCCCCCEEEECS-SSCEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEE-E
T ss_pred EE-EccccCCCCCceEEEEEECC-CCCEEEE-cCCc-eEEEECCCCce-EEecccCCccccccccCceEECCCCEEEE-E
Confidence 32 222 1 234588999988 7876664 4455 77788776653 3332 111 1 234667777886544 6
Q ss_pred cCCcceecC
Q 002196 946 GADSQVRNN 954 (954)
Q Consensus 946 s~Dg~I~i~ 954 (954)
+.+|-+++|
T Consensus 645 ~~~Gl~~f~ 653 (781)
T 3v9f_A 645 SINGLCFFN 653 (781)
T ss_dssp ETTEEEEEC
T ss_pred CCCceEEEC
Confidence 777877664
No 212
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=3.6e-07 Score=110.10 Aligned_cols=484 Identities=11% Similarity=0.039 Sum_probs=274.3
Q ss_pred cceeeeeeCCCCCcceeecCCCC---CcceEEEecC-----------CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCC
Q 002196 323 VNILPVAYTPQSLGQSSYSTDDL---PKTVVMTLNQ-----------GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS 388 (954)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~~---~~~~~~~~~h-----------~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~ 388 (954)
+.|.++.-..+|. ++.+..+++ .+.....+.+ ...|.++...++|. .|-.|+.++-+..||..+
T Consensus 19 n~V~~I~qD~~G~-lWigT~~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~-~lWigt~~~Gl~~~d~~~ 96 (781)
T 3v9f_A 19 NYVLSITQDKQGF-LWFATEEGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQP-VIWIATQRAGLNAYNYET 96 (781)
T ss_dssp SBEEEEEECTTSC-EEEEESSCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSS-EEEEEESSSCEEEEETTT
T ss_pred CEeEEEEECCCCC-EEEccCCcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCC-EEEEEeCCCCcceECCCC
Confidence 4566777777764 444433332 2222333332 23599999999887 234566775699999887
Q ss_pred CceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEcc--CCCEEEEEEcCCEEEEEEeeCCcceeeeee--ee-ccc
Q 002196 389 RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDELRNHLE--IE-AHV 463 (954)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~-~h~ 463 (954)
++.... ..... .. ..-....|.++.... +|. |..++.++-|..|+..+++... ... .. -..
T Consensus 97 ~~f~~~------~~~~~----~~--~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~ 162 (781)
T 3v9f_A 97 QSFSVY------QYNPE----DP--QSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTH-YNKSTVPALPS 162 (781)
T ss_dssp TEEEEE------CCCTT----CS--SSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEE-ESTTTCTTCSC
T ss_pred CeEEee------ccccC----CC--CCcccCcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEe-eccCcccCCCc
Confidence 654321 00000 00 001124688998887 665 4446645558888877654221 100 00 113
Q ss_pred CCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec-------cCCCCeEEEeeeccCCccEEEEEecCCeEEEE
Q 002196 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-------GHESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (954)
Q Consensus 464 ~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 536 (954)
..|.++...+++. +..++.++-+..||..+++...-.. .....|.++.....+ .|..++.+ -+.+|
T Consensus 163 ~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---~lwigt~~-Gl~~~ 235 (781)
T 3v9f_A 163 EQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG---NIWIGTSK-GLALF 235 (781)
T ss_dssp CCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC---CEEEEETT-EEEEE
T ss_pred cceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC---CEEEEeCC-cHheE
Confidence 4588888877776 5556666678899987765432211 113457777654433 35555555 68889
Q ss_pred eCCCCCceeEe-------eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe-------------cC
Q 002196 537 LYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-------------GL 596 (954)
Q Consensus 537 d~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~ 596 (954)
|..+....... ......|.++...++|...+ ++..+ | +.++|..++....... ..
T Consensus 236 d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~-G---l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 236 NANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELN-G---IMILDLQQNQFLLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp ETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSS-C---EEEEETTCC---------CEEECBCSSTTSB
T ss_pred CCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCC-C---eEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence 87654322211 12234789999988886554 44312 1 8889987765432211 11
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe-------cCCCCCCcceEEECCCCCEEEEEeCCCcEEEE
Q 002196 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID-------ADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iw 669 (954)
....|.++...++|. |..|+.++-|..++..++....... .......|.++...++|.+. .|+.++-|..|
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~ 388 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVF 388 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence 223688888888775 5556666778888877654332211 01123458888888877655 45656668888
Q ss_pred EccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccc
Q 002196 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (954)
Q Consensus 670 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~ 749 (954)
+..++ . ...+..
T Consensus 389 ~~~~~-~-~~~~~~------------------------------------------------------------------ 400 (781)
T 3v9f_A 389 ENGKR-V-AIYNKE------------------------------------------------------------------ 400 (781)
T ss_dssp ETTEE-E-EECC--------------------------------------------------------------------
T ss_pred ECCCC-e-EEEccC------------------------------------------------------------------
Confidence 86543 1 110000
Q ss_pred cccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCC
Q 002196 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (954)
Q Consensus 750 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~ 829 (954)
. .......|.++...++|. |-+++.++-+..++.. +
T Consensus 401 ------------~---------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~----------------------~ 436 (781)
T 3v9f_A 401 ------------N---------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTR----------------------L 436 (781)
T ss_dssp ------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSS----------------------S
T ss_pred ------------C---------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCC----------------------C
Confidence 0 000234677888877777 4445555556666432 2
Q ss_pred cccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCCC-----CCCeeEEEecCCCCceEEEEe
Q 002196 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPP-----PPAATFLAFHPQDNNIIAIGM 904 (954)
Q Consensus 830 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~sp~d~~~lasgs 904 (954)
++....... ......|.+++..++|.+.+... +.|..||..+++........ ...|.++...+ +|++.+ |+
T Consensus 437 ~~~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt 512 (781)
T 3v9f_A 437 KKFQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GT 512 (781)
T ss_dssp CEEEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EE
T ss_pred CcEEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EE
Confidence 221111000 01346788999988888666554 67999998776543332222 35689999988 777655 45
Q ss_pred cCccEEEEeccccceEEEecC---CccceeEEEEecCCCeEEEecCCcc-eec
Q 002196 905 EDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQ-VRN 953 (954)
Q Consensus 905 ~dg~i~iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~s~Dg~-I~i 953 (954)
.++-+..||..+++...-... ....|.++...++|.+.+++. +|. .++
T Consensus 513 ~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~ 564 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFP 564 (781)
T ss_dssp SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEES
T ss_pred cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEE
Confidence 544588899877654332111 235689999988998666554 666 443
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.36 E-value=8.2e-10 Score=116.03 Aligned_cols=227 Identities=7% Similarity=0.034 Sum_probs=150.8
Q ss_pred CeEEEEEeCCCCEEEEE-ECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeE
Q 002196 600 SVGVVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 678 (954)
-..+..|+|++..++.. ..++.|+.||..+++. ..+.. ...+.+++++++|+++++ . ++.|.+||..++ +..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g-~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM---DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ-SAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC---SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT-EEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC---CCceEEEEECCCCCEEEE-E-CCeEEEEECCCC-cEE
Confidence 45678899976555544 4788999999988765 33432 246889999999996654 3 568999998776 221
Q ss_pred EEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCccccccccccccccccccc
Q 002196 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (954)
Q Consensus 679 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~ 758 (954)
.+....
T Consensus 87 -~~~~~~------------------------------------------------------------------------- 92 (297)
T 3g4e_A 87 -VLATVD------------------------------------------------------------------------- 92 (297)
T ss_dssp -EEEECC-------------------------------------------------------------------------
T ss_pred -EEEecC-------------------------------------------------------------------------
Confidence 111000
Q ss_pred ccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecC---------CeEEEeeccCCCCCCCCcccCCCCccccCCCC
Q 002196 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---------AVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (954)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d---------g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~ 829 (954)
.......+..++++|+|+.+++.... ....+|.+.. .
T Consensus 93 -------------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--------------------~- 138 (297)
T 3g4e_A 93 -------------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--------------------D- 138 (297)
T ss_dssp -------------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--------------------T-
T ss_pred -------------CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--------------------C-
Confidence 00012346778899999865544322 2334554321 1
Q ss_pred cccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEc--ccccE-----EEeeCCCCCCeeEEEecCCCCceE
Q 002196 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNM--MTFKT-----MTTFMPPPPAATFLAFHPQDNNII 900 (954)
Q Consensus 830 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~d~~~l 900 (954)
+..... .. .......++|+||++.|+.+. ++.|.+|++ .++.. ...+..+.+.+..+++++ +|++.
T Consensus 139 g~~~~~-~~---~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lw 213 (297)
T 3g4e_A 139 HHVKKY-FD---QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLW 213 (297)
T ss_dssp SCEEEE-EE---EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEE
T ss_pred CCEEEE-ee---ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEE
Confidence 111100 00 223457899999999776554 689999997 45543 223333345688999999 88888
Q ss_pred EEEecCccEEEEeccccceEEEecCCccceeEEEEe-cCCCeEEEec
Q 002196 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSG 946 (954)
Q Consensus 901 asgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~s 946 (954)
++....+.|.+||.++|+.+..+..+...+++++|+ ||++.|..++
T Consensus 214 va~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 887778899999999999999998887889999999 8888665443
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=2.3e-10 Score=134.34 Aligned_cols=333 Identities=10% Similarity=0.036 Sum_probs=188.9
Q ss_pred cEEEEEecCCeEEEEeCCCCCceeEeeCCCCc----------e-EEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS----------S-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 522 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
..++.++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.+..+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 46777788888999999888887766543220 0 11222 3456777654 345999999999998
Q ss_pred EEEecC-CCCCeEEEEEeC--CCCEEEEEE------CCCeEEEEECCCCceeEEEecCCCC-------------------
Q 002196 591 RTYHGL-GKRSVGVVQFDT--TKNRFLAAG------DEFMIKFWDMDNVNLLASIDADGGL------------------- 642 (954)
Q Consensus 591 ~~~~~~-~~~~i~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~------------------- 642 (954)
..+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+......
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 887653 110111111111 133455543 3789999999999999887631100
Q ss_pred ----------CCcceEEECCCCCEEEEEeCCCc-------------------EEEEEccCCCeeEEEeccccccceecch
Q 002196 643 ----------QASPCIRFNKEGILLAVSTNDNG-------------------IKILANADGIRLLRTVESRTFDASRVAS 693 (954)
Q Consensus 643 ----------~~v~~v~~s~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 693 (954)
.....++++|++.+++.++.++. |..||..+|+ ....++....
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~------- 296 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPG------- 296 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTT-------
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCc-------
Confidence 01135788888888888877754 6666666663 2222221000
Q ss_pred hccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCC
Q 002196 694 AAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDN 773 (954)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 773 (954)
..|+..
T Consensus 297 ----------------------------------------------------------d~wd~~---------------- 302 (689)
T 1yiq_A 297 ----------------------------------------------------------DAWDYT---------------- 302 (689)
T ss_dssp ----------------------------------------------------------CCSCCC----------------
T ss_pred ----------------------------------------------------------cccccc----------------
Confidence 011110
Q ss_pred CCccceEEEEEecCCc---eEEEeecCCeEEEeeccCCCCCCC----------------CcccCCCCccccCCCCccccc
Q 002196 774 LTAMRVSRLIYTNSGL---AILALASNAVHKLWKWPRNERNST----------------GKATTNQAPQLWQPPSGILMT 834 (954)
Q Consensus 774 ~~~~~v~~~~~spdg~---~l~~~~~dg~v~lw~~~~~~~~~~----------------g~~~~~~~i~l~~~~~~~~~~ 834 (954)
....+.......+|+ .++.++.+|.++++|..+++.-.. +..+.... ..|...++....
T Consensus 303 -~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~-~~~~~~~~~~~~ 380 (689)
T 1yiq_A 303 -ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEE-NAAYWKNGKRNL 380 (689)
T ss_dssp -CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHH-HHCTTTSSSCEE
T ss_pred -CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchh-hccccCCCCeeE
Confidence 001111112223454 567777778888887655432100 00000000 000000111000
Q ss_pred ccCCCCCCCCCccEEEeccCCCeEEEec----------------------------------------------CCeEEE
Q 002196 835 NDISDTNPEDAVPCFALSKNDSYVMSAS----------------------------------------------GGKISL 868 (954)
Q Consensus 835 ~~~~~~~~~~~v~~~~~s~dg~~la~~s----------------------------------------------dg~i~i 868 (954)
..++..-...-..++|+|+..++++.. +|.|+.
T Consensus 381 -~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 381 -VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp -ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred -eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 011100111233478888887777541 267999
Q ss_pred EEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccc-eeEEEEecCCC-eEEEec
Q 002196 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLN-VLVSSG 946 (954)
Q Consensus 869 wd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~-~l~s~s 946 (954)
||+.+|+.+..++.+. ++..-.++. .+.++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+ |+++.+
T Consensus 460 ~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 460 WDPVKQQAAWEVPYVT-IFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCeEeEccCCC-CccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999998887543 333335555 5678999999999999999999999888754332 34577889997 444443
Q ss_pred C
Q 002196 947 A 947 (954)
Q Consensus 947 ~ 947 (954)
.
T Consensus 538 G 538 (689)
T 1yiq_A 538 G 538 (689)
T ss_dssp C
T ss_pred c
Confidence 3
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=3.6e-10 Score=133.97 Aligned_cols=251 Identities=11% Similarity=0.056 Sum_probs=165.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcC----CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCC
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNM----GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (954)
|...+..++|||||++++.+.+.. ..|++||+.+++.+.. . + +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CC
Confidence 334688899999999766655444 4699999999986542 0 0 11113567899 99
Q ss_pred CEEEEEEcCC-------------EEEEEEeeCCccee-eeeeeec-ccCCEEEEEEecCCCceEEEEEc---CCCeEEEE
Q 002196 431 TLFGVAYSKH-------------IVHLYTYHGGDELR-NHLEIEA-HVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVW 492 (954)
Q Consensus 431 ~~l~s~~~dg-------------~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~---~dg~i~iw 492 (954)
+.|+.++.+. .|++|++.++.... ....... |...+..+.|+|||+.+ +++.+ .++.|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998874 39999988765321 1112233 45567899999999963 34433 23589999
Q ss_pred ECCCCc-eEEEeccCCCCeEEEeeeccCCccEEEEEecC---CeEEEEeCCCCCc--eeEeeCCCCceEEEEECCCCCEE
Q 002196 493 DAVTGT-KQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 493 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
|+.++. ....+..+....... +.+.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 998764 445566566655554 444443 455555443 6799999987654 233444444444 899999998
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC----CeEEEEECCCCcee
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE----FMIKFWDMDNVNLL 633 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 633 (954)
+....+ ++...|++||+..+ ....+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 887653 33557999998754 4445543333356667778888776665444 79999999887643
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=2.6e-10 Score=122.61 Aligned_cols=266 Identities=10% Similarity=0.040 Sum_probs=160.6
Q ss_pred CceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC------CCCCeEEEEEeCCCCEEEEEEC-----CC
Q 002196 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------GKRSVGVVQFDTTKNRFLAAGD-----EF 620 (954)
Q Consensus 552 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-----dg 620 (954)
..+..++++++|+.+++......+...|...+ +++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 57889999999998887542211222344444 5543 333211 1236889999999876665443 57
Q ss_pred eEEEEECCCCceeEEEecCC----CCCCcceEEECCCCCEE-EEEe---CCCcEEEEEccCCCeeEEEeccccccceecc
Q 002196 621 MIKFWDMDNVNLLASIDADG----GLQASPCIRFNKEGILL-AVST---NDNGIKILANADGIRLLRTVESRTFDASRVA 692 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l-~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 692 (954)
.|.+||+.+++.+..+.... ....+..+++++++..+ ++.. .++.|.+||+.++ +..+.+.+|.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~--- 169 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAP--- 169 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSC---
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccc---
Confidence 99999999998887776431 12346899999865444 5444 5789999999877 44444433211000
Q ss_pred hhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCC
Q 002196 693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD 772 (954)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 772 (954)
T Consensus 170 -------------------------------------------------------------------------------- 169 (343)
T 2qe8_A 170 -------------------------------------------------------------------------------- 169 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEec
Q 002196 773 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALS 852 (954)
Q Consensus 773 ~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s 852 (954)
.. ..++++|..+.+...+|.++.|. ..+..++||
T Consensus 170 ----~~---~~~~~~g~~~~~~~~~g~~~~~~---------------------------------------~~~~gia~s 203 (343)
T 2qe8_A 170 ----ED---IDLVIDGVPVQIGQPDGTVIRPH---------------------------------------LGVNGIVLD 203 (343)
T ss_dssp ----CS---CCCEETTEECBEECTTSCEECCC---------------------------------------CCEEEEEEC
T ss_pred ----cc---cceeECCEEEEeccCCCceecee---------------------------------------cccceeEec
Confidence 00 11223344344444444444331 123457777
Q ss_pred cCCCeEEEec-CC-eEEEEEcccc--------cEEE--eeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceE
Q 002196 853 KNDSYVMSAS-GG-KISLFNMMTF--------KTMT--TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (954)
Q Consensus 853 ~dg~~la~~s-dg-~i~iwd~~~~--------~~~~--~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~ 920 (954)
|||+.|+++. ++ .++.++.... +... ...++.+....+++++ +|.++++...++.|.+||..+|+..
T Consensus 204 ~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 204 AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEE
Confidence 7777776665 33 4444443210 0000 1112334567899999 8999999888999999998667643
Q ss_pred EEecC-CccceeEEEEecCCCeEEEecCCcce
Q 002196 921 TKLKG-HQKRITGLAFSNTLNVLVSSGADSQV 951 (954)
Q Consensus 921 ~~~~~-h~~~V~~l~~s~dg~~l~s~s~Dg~I 951 (954)
..... +...+++++|.++|+++++.+..+.+
T Consensus 283 ~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 283 LLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 33322 24568999999999988887766544
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=1.4e-10 Score=124.71 Aligned_cols=274 Identities=11% Similarity=0.032 Sum_probs=174.7
Q ss_pred CCeeEEEEcCCCCeEEEEEE--cCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
..+..++++|+|+ ++++.. .++.++||.+.+++... +.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~---~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIP---FPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEE---SCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeec---CCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6789999999998 666653 23435566655543321 11010 01234667899999999998766
Q ss_pred EEEc-----CCEEEEEEeeCCcceeeeeeee----cccCCEEEEEEecCCCceEEEEEc---CCCeEEEEECCCCceEEE
Q 002196 435 VAYS-----KHIVHLYTYHGGDELRNHLEIE----AHVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDAVTGTKQYI 502 (954)
Q Consensus 435 s~~~-----dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~ 502 (954)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988755422 121 12345789999987654 456665 688999999999988777
Q ss_pred eccCCCCeE-EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 503 FEGHESPVY-SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 503 ~~~~~~~v~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
+.+|..... ...+..+ |..+.+.+.++.++.|. ..+..++|+|+|+.|+++...+ ..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~---~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVID--GVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHS---TSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEET--TEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSC---SEEEE
T ss_pred ecCCCcccccccceeEC--CEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCC---CeEEE
Confidence 766532211 1223332 35666677778776653 2467899999999998876533 23555
Q ss_pred EeCC---CCe-----EEE--EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 582 WNES---EGA-----VKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 582 wd~~---~~~-----~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5531 110 000 1111222 4456899999998888888999999998566644333321 23357899999
Q ss_pred CCCCEEEEEeCCCcEE
Q 002196 652 KEGILLAVSTNDNGIK 667 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~ 667 (954)
+++.++++.+..+.+.
T Consensus 300 ~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSA 315 (343)
T ss_dssp TTSCEEEEECCGGGSG
T ss_pred CCCcEEEEeCcccccc
Confidence 9988887776554443
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=1.2e-09 Score=119.99 Aligned_cols=240 Identities=12% Similarity=0.019 Sum_probs=161.6
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 777777789999999988765432 111 12233 9999999999988
Q ss_pred EcCC--EEEEEEeeCCcceeeeeeeec-ccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE----eccCCCC
Q 002196 437 YSKH--IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----FEGHESP 509 (954)
Q Consensus 437 ~~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~ 509 (954)
..++ .|.+|+..++........+.. ....+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788888876654332111122 4466889999995553 44467789999999987764332 2222222
Q ss_pred e--EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC---------------CCceEEEEECCCCCEEEEEEeC
Q 002196 510 V--YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---------------GHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 510 v--~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
- ..++|++.. +.++++...++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 288988743 356667777889999987643 2222221 13478999999999555432
Q ss_pred CCCceEEEEEeCCCCeEEEEEecCC--------------CCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (954)
.+...|+.||+.++... .+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02556999998788754 333320 125778999999877777778888887765
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=1.6e-09 Score=118.84 Aligned_cols=239 Identities=9% Similarity=0.070 Sum_probs=163.0
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC--eEEEEECCC
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVT 496 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~ 496 (954)
.....++|+++|+++++...++.|++||.+++.... .... ..... ++|+++++ .++.+..++ .|.+||...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 578899999999977777777999999998776433 1222 22334 99999999 567776655 899999876
Q ss_pred CceEEEe----ccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE----eeCCCCce-E-EEEECCCCCEE
Q 002196 497 GTKQYIF----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHSS-T-MMAYSADGARL 566 (954)
Q Consensus 497 ~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v-~-~~~~s~~g~~l 566 (954)
+.....+ ......+.++++++.. ..|+.+..++.|+.||..+...... .......- . .++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~--g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETE--EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTS--SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCC--CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6554444 2245667788888743 3455577788999999887654332 11111122 3 99999976666
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCC--------------CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCc
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG--------------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN 631 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 631 (954)
+++.. ....|+.|+.... +..+.+.. -.....++++++|+++++-. .++.|+.|++.++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 66542 2456999987644 33333322 12477899999999777777 88999999987776
Q ss_pred eeEEEecCC------------CCCCcceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 632 LLASIDADG------------GLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 632 ~~~~~~~~~------------~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
......... .......++++++|.++++-..+++|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 543332100 0234678999999888888888888888765
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=6.7e-10 Score=116.69 Aligned_cols=227 Identities=11% Similarity=0.065 Sum_probs=151.6
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
-.-+..|+|++..++++...++.|..||..+++... ......+.+++++|+|+++++ .
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~-~ 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVAT-I 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEE-E
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEE-E
Confidence 455899999877788888889999999998876432 113467999999999995554 3
Q ss_pred cCCEEEEEEeeCCcceeeeeeeec--ccCCEEEEEEecCCCceEEEEEcC-----------CCeEEEEECCCCceEEEec
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGE-----------DRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~ 504 (954)
++.|.+||.++++... ...... ....+..++++|+|+ ++++... .+.|..+|.. ++... +.
T Consensus 72 -~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~ 145 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YF 145 (297)
T ss_dssp -TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EE
T ss_pred -CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECC-CCEEE-Ee
Confidence 5679999998775322 111111 123588999999998 4444321 2344444532 33332 33
Q ss_pred cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC--CCCce--e-E--eeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSR--V-D--YDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 505 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~--~-~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
.+....+.++|++++. .++++.+.++.|..|+++ ++... . . +.........++++++|++.++... ..
T Consensus 146 ~~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~ 220 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GG 220 (297)
T ss_dssp EEESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TT
T ss_pred eccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CC
Confidence 3344567889987663 244566668899999874 33211 1 1 1122346788999999976665543 23
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEe-CCCCEEEEEEC
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAGD 618 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 618 (954)
.|..||..+++.+..+..+.. .+.+++|. |+++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 499999999999888887644 78999998 88877766653
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=1.5e-09 Score=127.05 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=131.7
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCC----------e-EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
.++.++.++.|..+|..+|+.+..+...... + ..+++ .+ ..++.++.|+.+..+|..+++....+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~--~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WK--GKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ET--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--EC--CEEEEEcCCCEEEEEECCCCCEEeee
Confidence 3777778899999999999999887644221 1 11222 12 57888999999999999999888777
Q ss_pred eCC-C----CceEE-EEECCCCCEEEEEEeCCC--CceEEEEEeCCCCeEEEEEecCCCC--------------------
Q 002196 548 DAP-G----HSSTM-MAYSADGARLFSCGTNKE--GESYLVEWNESEGAVKRTYHGLGKR-------------------- 599 (954)
Q Consensus 548 ~~~-~----~~v~~-~~~s~~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 599 (954)
... . ..+.+ ... .+..+++++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 2 11111 111 2345555443211 2467999999999999887653221
Q ss_pred -----------CeEEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCceeEEEecCCCC-------
Q 002196 600 -----------SVGVVQFDTTKNRFLAAGDEF-------------------MIKFWDMDNVNLLASIDADGGL------- 642 (954)
Q Consensus 600 -----------~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------- 642 (954)
....++++|++..++.+..++ .|..+|..+|+.+..++...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 112468889999999887664 5999999999999888753221
Q ss_pred CCcceEEECCCC---CEEEEEeCCCcEEEEEccCCCeeEEE
Q 002196 643 QASPCIRFNKEG---ILLAVSTNDNGIKILANADGIRLLRT 680 (954)
Q Consensus 643 ~~v~~v~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~ 680 (954)
.....+....+| ..++.++.+|.++++|..+| +++..
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~ 352 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISA 352 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEE
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEecc
Confidence 111222333367 67889999999999999999 44433
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=1.1e-09 Score=116.75 Aligned_cols=283 Identities=10% Similarity=-0.020 Sum_probs=174.5
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE----------CCCeEEEEECCCCceeEEEecCCCC-----
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGGL----- 642 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~----- 642 (954)
.+.++|..+++.+.++..... + .+.++||+++++++. .++.|.+||..+++.+..+...+..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 688999999999999987655 4 699999999998886 3689999999999999998754111
Q ss_pred CCcceEEECCCCCEEEEEeC--CCcEEE--EEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccc
Q 002196 643 QASPCIRFNKEGILLAVSTN--DNGIKI--LANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718 (954)
Q Consensus 643 ~~v~~v~~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (954)
.....++++|||++++++.. +..+.+ +|+.+ .+.+.-... .
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~-~------------------------------ 168 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASC-F------------------------------ 168 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSC-C------------------------------
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCc-e------------------------------
Confidence 24578999999999988864 457888 88765 222221000 0
Q ss_pred cccccccccccCCCCCCCCCC-ccccccccccccccccccc-----ccCCCceeEEecCCCCCccceEEEEEecCCceEE
Q 002196 719 RTAPAAAMVGMSNDSRNFTDV-KPKIADEAVEKSRIWKLTE-----ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL 792 (954)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~-~~lvs~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 792 (954)
...+++ ..+++.+.|+.+.+.++.. ........ ..... ...+. + ++++..++
T Consensus 169 ---------------~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~v-g~~P~---~-~~~~~~~~ 226 (368)
T 1mda_H 169 ---------------HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNC-SSQAA---Q-ANYPGMLV 226 (368)
T ss_dssp ---------------CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCB-CSCCE---E-ETTTTEEE
T ss_pred ---------------EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeC-CCCcc---c-cccCCEEE
Confidence 000111 1223333445554444432 11000000 00000 11222 3 66666666
Q ss_pred EeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--C-------
Q 002196 793 ALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--G------- 863 (954)
Q Consensus 793 ~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--d------- 863 (954)
..+. +.+.+.|+...... .+..|............ .......++++||++++.++. +
T Consensus 227 ~vs~-~~V~viD~~~~~~~---------v~~~~~~~~~~~~~~~~----~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 227 WAVA-SSILQGDIPAAGAT---------MKAAIDGNESGRKADNF----RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ECBS-SCCEEEECCSSCCE---------EECCCCSSCTHHHHTTE----EECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred EEcC-CEEEEEECCCCcce---------EEEEEEecccccccccc----ccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 6666 88888776421100 01112222111000000 112223378999999887642 2
Q ss_pred -CeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCc-eEEEEe-cCccEEEEeccccceEEEecCCccceeEEEEec
Q 002196 864 -GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN-IIAIGM-EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (954)
Q Consensus 864 -g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~-~lasgs-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 937 (954)
+.+.++|+.+++.+.++.... ....++|+| ||+ ++++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 257799999999998887433 589999999 776 556666 589999999999999999986543 45666654
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=9.8e-10 Score=115.96 Aligned_cols=231 Identities=14% Similarity=0.082 Sum_probs=155.7
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.+........|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEE
Confidence 345567899999999988899888999999998 444221 22355678999999999977
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecc-cCCEEEEEEecCCCceEEEE----EcC-------------CCeEEEEECC
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVT----CGE-------------DRVIKVWDAV 495 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~~l~s----~~~-------------dg~i~iwd~~ 495 (954)
++...++.|.+|+.+ ++.........+. ...+.++++.++|+ ++++ |.. .+.|..||..
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 665556789999876 4422111111111 13467899999998 5665 332 3578888877
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEecC------CeEEEEeCCCCCc---eeEeeCCCCceEEEEECCCCCEE
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARL 566 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l 566 (954)
+++..... .......++|++++ +.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 77654433 34456788888765 566666554 7899999875431 11111223345678999999954
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCe
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 621 (954)
++ ..+ .|.+||. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 254 v~-~~~-----gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 254 SS-SGT-----GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EC-CSS-----EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred Ee-cCC-----cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 44 321 2999998 577777776554 4788999999988888887643
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=3.4e-10 Score=134.19 Aligned_cols=245 Identities=11% Similarity=0.140 Sum_probs=160.1
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEc-----CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC---
Q 002196 415 SDYTASVNRVMWSPDGTLFGVAYS-----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--- 486 (954)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--- 486 (954)
.+|...+..++|||||++||.+.. ...|++||+++++.+.. .+.. .....++|+ |++. |+.++.+
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~~--l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNEG--FFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTTE--EEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCCE--EEEEEecCcc
Confidence 346678999999999999986532 25799999999875432 1221 113578999 9995 5555554
Q ss_pred ----------CeEEEEECCCCce--EEEe--cc-CCCCeEEEeeeccCCccEEEEEec----CCeEEEEeCCCCC-ceeE
Q 002196 487 ----------RVIKVWDAVTGTK--QYIF--EG-HESPVYSICPHHKENIQFIFSTAT----DGKIKAWLYDNLG-SRVD 546 (954)
Q Consensus 487 ----------g~i~iwd~~~~~~--~~~~--~~-~~~~v~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~ 546 (954)
..|++|++.++.. ...+ .. |...+.++.+++++ ++|+.... +..|+++|+.+.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 3499999987652 2333 33 44456777887665 56644332 2479999998764 3344
Q ss_pred eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeE--EEEEecCCCCCeEEEEEeCCCCEEEEEEC-CC--e
Q 002196 547 YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EF--M 621 (954)
Q Consensus 547 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~ 621 (954)
+..+....... ++++|..|+..+..+.....|..+|+.++.. ...+..+.. .+. .|+++++.|+.... ++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887777665433356799999988654 234555554 333 78899988887764 44 7
Q ss_pred EEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCC----CcEEEEEccCC
Q 002196 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND----NGIKILANADG 674 (954)
Q Consensus 622 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~d----g~i~iwd~~~~ 674 (954)
|++|++..+ ....+.... ...+..+.+++++..++....+ +.++.||+.++
T Consensus 352 l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 899998754 445554332 2346667778888766655444 78999998876
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=1.8e-10 Score=122.93 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=134.3
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
+++.+++++... ++++|+.++ +.+|++.+.+.... .....+.......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~---------~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHIT---------SDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHH---------SSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhc---------cccccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999999 788888875 56699765431000 0000011111223566 999999 99999999
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 517 (954)
.++.|++||+.+..... ....|...+.++.+.+.. +++++.||.|.+||+.++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p~----~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNNT----LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSSE----EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCCC----EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765433 456677889888877542 7888999999999999887653 446799999998
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCCc--eeEe------e---CCCCceEEEEECCCCCEEEEEE
Q 002196 518 KENIQFIFSTATDGKIKAWLYDNLGS--RVDY------D---APGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 518 ~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
.+ ++.|..||.+++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 65 67899999999998876653 3333 2 2567899999999998887654
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=4.7e-10 Score=119.56 Aligned_cols=269 Identities=9% Similarity=-0.027 Sum_probs=173.0
Q ss_pred eEEEEEEcCC----eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE--------
Q 002196 370 ILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-------- 437 (954)
Q Consensus 370 ~ll~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~-------- 437 (954)
++.++...++ .|.+.|..+++.+.+.. .+. .+ .++++|||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3555555455 88899999998886522 122 34 799999999999886
Q ss_pred --cCCEEEEEEeeCCcceeeeeeeec-c----cCCEEEEEEecCCCceEEEEEc--CCCeEEE--EECCCCceEEEeccC
Q 002196 438 --SKHIVHLYTYHGGDELRNHLEIEA-H----VGSVNDLAFSYPNKQLSVVTCG--EDRVIKV--WDAVTGTKQYIFEGH 506 (954)
Q Consensus 438 --~dg~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~~~~s~~~~~~~l~s~~--~dg~i~i--wd~~~~~~~~~~~~~ 506 (954)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..+.+ +|+.+ +..+...
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36889999999998776332 110 0 123568999999996 44443 3567888 99877 4444321
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC----CCcee-----EeeCCCCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN----LGSRV-----DYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
+. ..+.+.+. ..+++.+.|+.+.+.|+.+ ..... .+.....+. . ++++..++..+. +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~---- 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-S---- 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-S----
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-C----
Confidence 11 22334443 3556677788888888876 22111 011112232 3 566666665554 2
Q ss_pred EEEEEeCCCCe--EEEEEecC------CC---CCeEEEEEeCCCCEEEEEEC---------CCeEEEEECCCCceeEEEe
Q 002196 578 YLVEWNESEGA--VKRTYHGL------GK---RSVGVVQFDTTKNRFLAAGD---------EFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 578 ~i~iwd~~~~~--~~~~~~~~------~~---~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 637 (954)
.+.+.|..+.. .+..+... .. .....+.++|+++.++.+.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 38888886532 22222111 00 01122679999998887543 2356699999999998887
Q ss_pred cCCCCCCcceEEECCCCC-EEEEEe-CCCcEEEEEccCCCeeEEEecc
Q 002196 638 ADGGLQASPCIRFNKEGI-LLAVST-NDNGIKILANADGIRLLRTVES 683 (954)
Q Consensus 638 ~~~~~~~v~~v~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 683 (954)
... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+..
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~v 355 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVEL 355 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEEC
Confidence 542 468999999997 566666 5899999999998 77777654
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=4.1e-09 Score=112.24 Aligned_cols=222 Identities=14% Similarity=0.028 Sum_probs=147.8
Q ss_pred eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc
Q 002196 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~ 438 (954)
..+.+|+|+++.+++++..++.|.+||..+++... | .....+.+++|+|+|+++++. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~v~~i~~~~dg~l~v~~-~ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-D 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-T
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------ECCCcceEEEEeCCCeEEEEE-C
Confidence 45789999877788888888999999998875432 1 123579999999999877754 4
Q ss_pred CCEEEEEEeeCCcceeeeeeeec--ccCCEEEEEEecCCCceEEEEEcC------CCeEEEEECCCCceEEEeccCCCCe
Q 002196 439 KHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
+ .|.+||..+++... ...... ....+.+++++|+|+ ++++... .+.|..+| +++... +..+....
T Consensus 109 ~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~ 181 (326)
T 2ghs_A 109 D-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP 181 (326)
T ss_dssp T-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE
T ss_pred C-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc
Confidence 4 48999988776322 111111 123588999999998 4444332 25666666 455433 32233456
Q ss_pred EEEeeeccCCccEE-EEEecCCeEEEEeCC--CC-Cc---eeE--eeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 511 YSICPHHKENIQFI-FSTATDGKIKAWLYD--NL-GS---RVD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 511 ~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~--~~-~~---~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
..++|++++ +.+ ++.+.++.|.+||++ ++ .. ... +.........++++++|.+.++... ...|..
T Consensus 182 ~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 788888765 455 444567899999986 43 21 111 1122345678999999986665532 234999
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEe-CCCCEEEEEE
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 617 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 617 (954)
||. +++.+..+..... .+.+++|+ ++++.|++++
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 998 6777777766544 68999998 8887776655
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=8.3e-09 Score=121.10 Aligned_cols=363 Identities=14% Similarity=0.110 Sum_probs=211.4
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCC----------e-EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP----------V-YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
.++.++.++.|+.+|..+|+.+..+...... + ..+.+ .. ..++.++.|+.|..+|.++++....+
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~--g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WK--GKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ET--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--EC--CEEEEEccCCEEEEEECCCCCEeeee
Confidence 4777888899999999999999887643221 0 11111 12 57888999999999999999887766
Q ss_pred eCC-C-CceEEEEECC---CCCEEEEEEeCC--CCceEEEEEeCCCCeEEEEEecCCC----------------------
Q 002196 548 DAP-G-HSSTMMAYSA---DGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGK---------------------- 598 (954)
Q Consensus 548 ~~~-~-~~v~~~~~s~---~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 598 (954)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+..+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1111111112 44 444443211 1256799999999999887753110
Q ss_pred --------CCeEEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCceeEEEecCCCC-------CC
Q 002196 599 --------RSVGVVQFDTTKNRFLAAGDEFM-------------------IKFWDMDNVNLLASIDADGGL-------QA 644 (954)
Q Consensus 599 --------~~i~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 644 (954)
.....++++|++..++.+..++. |..||..+|+.+..++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788898899999987764 999999999999888753221 11
Q ss_pred cceEEECCCCC---EEEEEeCCCcEEEEEccCCCeeEEEecccc-ccceecchhccccCCccccccCCCCCccccccccc
Q 002196 645 SPCIRFNKEGI---LLAVSTNDNGIKILANADGIRLLRTVESRT-FDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720 (954)
Q Consensus 645 v~~v~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (954)
........+|+ .++.++.+|.++++|..+|+ ++....... .....+.. .
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~~~--~------------------------ 359 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQSWTKGMDM--K------------------------ 359 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEEET--T------------------------
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC-EeccccccccccccccCc--c------------------------
Confidence 11112222554 78889999999999999994 443322111 00000000 0
Q ss_pred cccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeE
Q 002196 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVH 800 (954)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v 800 (954)
.+..+... .....|. .. ...+..+...-...-..++|+|+...+++...+...
T Consensus 360 -----------------~~~pi~~~---~~~~~~~------~~-~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~ 412 (689)
T 1yiq_A 360 -----------------TGRPILDE---ENAAYWK------NG-KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSA 412 (689)
T ss_dssp -----------------TTEEEECH---HHHCTTT------SS-SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCE
T ss_pred -----------------CCCcccch---hhccccC------CC-CeeEeCCCcccccCCCcceECCCCCEEEEeccccce
Confidence 00000000 0000000 00 001111111011122347899999888888777666
Q ss_pred EEeeccCCC-CCC--CCccc--------------------CCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCe
Q 002196 801 KLWKWPRNE-RNS--TGKAT--------------------TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (954)
Q Consensus 801 ~lw~~~~~~-~~~--~g~~~--------------------~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 857 (954)
.++...... ..+ .+... ....+..||+.+|+.+...- +........++..+.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~taggl 488 (689)
T 1yiq_A 413 YYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP----YVTIFNGGTLSTAGNL 488 (689)
T ss_dssp EEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTE
T ss_pred eeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc----CCCCccCccceECCCE
Confidence 655443210 000 00000 02568889999998765432 1223344466778888
Q ss_pred EEEec-CCeEEEEEcccccEEEeeCCCCCC-eeEEEecCCCCc-eEEEEec
Q 002196 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPA-ATFLAFHPQDNN-IIAIGME 905 (954)
Q Consensus 858 la~~s-dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~d~~-~lasgs~ 905 (954)
+++++ ||.+++||.++|+.+.+++.+.+. ..-+.|+. ||+ ++++.+.
T Consensus 489 vf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~-~G~qyv~~~~G 538 (689)
T 1yiq_A 489 VFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV-DGEQYVTFMAG 538 (689)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE-TTEEEEEEEEC
T ss_pred EEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE-CCEEEEEEEec
Confidence 88888 999999999999999988755433 34577777 555 5555543
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=7.6e-09 Score=110.12 Aligned_cols=222 Identities=15% Similarity=0.092 Sum_probs=145.4
Q ss_pred eEEEEEccCCCE-EEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce
Q 002196 421 VNRVMWSPDGTL-FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (954)
Q Consensus 421 V~~l~~spdg~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~ 499 (954)
..+.+|+|+++. +++...++.|..||..+++.. .+. ....+.+++|+++|+ ++++. . ..|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCcE
Confidence 457889998554 455556789999999876532 122 346799999999997 44443 4 4599999988875
Q ss_pred EEEecc----CCCCeEEEeeeccCCccEEEEEec------CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 500 QYIFEG----HESPVYSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 500 ~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
...... ....+.++++++++ .++++... .+.|..++ + .....+.........++|+|+|+.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 433221 12357888887755 55554432 24555555 3 3332222222356789999999988776
Q ss_pred EeCCCCceEEEEEeCC--CC-e-----EEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCC
Q 002196 570 GTNKEGESYLVEWNES--EG-A-----VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~--~~-~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 641 (954)
... ...|.+||.. ++ . ....+..... ....++++++|.++++...++.|.+||. +++.+..+..+
T Consensus 197 ~~~---~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~-- 269 (326)
T 2ghs_A 197 DTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP-- 269 (326)
T ss_dssp ETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--
T ss_pred ECC---CCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--
Confidence 432 3469999975 55 3 2222222222 5678899999988877777789999998 67777777654
Q ss_pred CCCcceEEEC-CCCCEEEEEeCC
Q 002196 642 LQASPCIRFN-KEGILLAVSTND 663 (954)
Q Consensus 642 ~~~v~~v~~s-~~~~~l~s~~~d 663 (954)
...+.+++|+ +++..|++++..
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCcEEEEEecCCCCEEEEEecC
Confidence 3468899998 888776555443
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=6.7e-10 Score=118.47 Aligned_cols=176 Identities=12% Similarity=0.056 Sum_probs=132.3
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcc--------eeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEE
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~ 490 (954)
..++.+++++...++++|+.++ +.+|+++.... .... ....+.. |+.++| |+. +|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence 3799999999999999999986 55699765331 1111 1234666 999999 777 57777 889999
Q ss_pred EEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEE
Q 002196 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 491 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 570 (954)
+||+.+.........|...+.++.+.+. .+++++.||.+.+||+.+..... ....|.+++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9999887766667778888888766532 28889999999999998766543 23489999999999 55666
Q ss_pred eCCCCceEEEEEeCCCCeE--EEEE------e---cCCCCCeEEEEEeCCCCEEEEEE
Q 002196 571 TNKEGESYLVEWNESEGAV--KRTY------H---GLGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
.++. +++|+...+.. ..++ . +|. ..|.++.|.+++.++++-+
T Consensus 180 ~dg~----i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRS----FQSFAWRNGEMEKQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSC----EEEEEEETTEEEEEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEEEE
T ss_pred cCCc----EEEEcCCCccccccceecCCcccccccCCC-eeEEEEEEecCCeEEEEEc
Confidence 5443 89998887775 5556 2 233 4799999999988888744
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=5.5e-08 Score=106.05 Aligned_cols=186 Identities=11% Similarity=0.032 Sum_probs=118.7
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCC---------CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHE---------SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 549 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 549 (954)
.++.++.++.|..+|..+|+.+..+.... ..+.+.. .... ..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSG--GHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEET--TEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeC--CEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 47888889999999999999887665421 2222211 1122 5788899999999999998887766655
Q ss_pred CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCC----eEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 550 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
........... +..+++++. ++.+..+|..+|+.+..+....... ....... +..+++++.++.|..+
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 43322122222 345666553 3459999999999888776543200 0122222 4578888889999999
Q ss_pred ECCCCceeEEEecCCCCC-----CcceEEECC--CCCEEEEEeCCCcEEEEEccCCC
Q 002196 626 DMDNVNLLASIDADGGLQ-----ASPCIRFNK--EGILLAVSTNDNGIKILANADGI 675 (954)
Q Consensus 626 d~~~~~~~~~~~~~~~~~-----~v~~v~~s~--~~~~l~s~~~dg~i~iwd~~~~~ 675 (954)
|..+++.+.......... .+..+...| .+..++.++.++.+..+|..++.
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ 260 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence 999999988776432110 000011111 24567777788899999988873
No 232
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.15 E-value=9e-06 Score=93.51 Aligned_cols=467 Identities=9% Similarity=0.002 Sum_probs=239.7
Q ss_pred cCCEEEEEEeeCCc-ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce-EEEeccCCCCeEEEee
Q 002196 438 SKHIVHLYTYHGGD-ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICP 515 (954)
Q Consensus 438 ~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~ 515 (954)
....|+..++.... ... .+...-..+..++|++.+.. ++++-...+.|..+++..... ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 45667888877542 111 12223445789999997775 456666778999999875532 2333333356788998
Q ss_pred eccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec
Q 002196 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 595 (954)
Q Consensus 516 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 595 (954)
.+.+. .+.++-...+.|.+.+++.................+++.|.+..|+...... ...|...++..... ..+..
T Consensus 92 D~~~~-~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~--~~~I~r~~~dG~~~-~~l~~ 167 (619)
T 3s94_A 92 DWLGE-KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE--VPKIERAGMDGSSR-FIIIN 167 (619)
T ss_dssp ETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSS--SCEEEEEETTSCSC-EEEEC
T ss_pred EecCC-EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCC--CCEEEEEECCCCce-EEEEe
Confidence 87442 5666666788999999886554444434445678899999877777664321 34576677653322 22222
Q ss_pred CCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 596 LGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 596 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
........+++++++..|+.+. ..+.|...|+............ ......+++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2223678899999877777765 6678999998764443333211 223357788765 44555456688999998877
Q ss_pred CeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccccc-------ccccccCCCCCCCCC-Cccccccc
Q 002196 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA-------AAMVGMSNDSRNFTD-VKPKIADE 746 (954)
Q Consensus 675 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~lvs~~ 746 (954)
. ....+.........+.+......+................|...... .....+.++.....+ ...++..+
T Consensus 245 ~-~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~ 323 (619)
T 3s94_A 245 E-GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 323 (619)
T ss_dssp C-CCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE
T ss_pred c-ccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE
Confidence 3 33333322211111111111001100000000000000111111000 000011122221111 11122222
Q ss_pred ccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec-CCeEEEeeccCCCCCCCCcccCCCCcccc
Q 002196 747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (954)
Q Consensus 747 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~v~lw~~~~~~~~~~g~~~~~~~i~l~ 825 (954)
..+.|+..++...... .+.++.. .-..+..++|.+.+..|+.+.. .+.|+-+++....
T Consensus 324 ~~~~i~~i~l~~~~~~----~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~---------------- 382 (619)
T 3s94_A 324 RRTDLRRISLDTPDFT----DIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG---------------- 382 (619)
T ss_dssp ESSCEEEEESSSTTCC----CEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------------
T ss_pred cccceEEEecCCCccc----eeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc----------------
Confidence 2345555555421111 1112221 1245678999986666666554 5677766543210
Q ss_pred CCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEE
Q 002196 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903 (954)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasg 903 (954)
...+ +.. .-.....+|+.+.+..|..+. .+.|.+.++........+...-.....+++.|..|.++.+-
T Consensus 383 ----~~~v---~~~--~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 383 ----SQFV---VTA--QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp ----CEEE---ECS--SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEE
T ss_pred ----cEEE---EEC--CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEec
Confidence 0000 111 224566899998666666554 68899999875433223333345689999999446555543
Q ss_pred ec-CccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEec
Q 002196 904 ME-DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 904 s~-dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
.. ...|...+++...........-...+.|++++++..|..+.
T Consensus 454 ~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD 497 (619)
T 3s94_A 454 WGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGD 497 (619)
T ss_dssp CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEE
Confidence 22 35666666654332222333345678899998666555443
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=1.1e-08 Score=107.72 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=152.3
Q ss_pred CCCCeEEEEEccCCC-EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 417 YTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 417 h~~~V~~l~~spdg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
.........|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999999 5556666789999987 443 22 3445667799999999998 56666667899999975
Q ss_pred CCceEEEeccC----CCCeEEEeeeccCCccEEEE----Eec-------------CCeEEEEeCCCCCceeEeeCCCCce
Q 002196 496 TGTKQYIFEGH----ESPVYSICPHHKENIQFIFS----TAT-------------DGKIKAWLYDNLGSRVDYDAPGHSS 554 (954)
Q Consensus 496 ~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~v 554 (954)
++........ ...+.++++.+++ .+.++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 6543222111 1335677777654 66665 322 256777776555443332 33467
Q ss_pred EEEEECCCCCEEEEEEeCC--CCceEEEEEeCCCCeEE--EEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 555 TMMAYSADGARLFSCGTNK--EGESYLVEWNESEGAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 555 ~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
..++|+||++.|+++.... .+...|.+||+..+... ..+..........++++++|+..++ +.+ .|.+|+. .+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 8899999999888775421 01246899998765421 1221111224556889999985444 444 4999998 57
Q ss_pred ceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEE
Q 002196 631 NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (954)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~ 667 (954)
+.+..+..+. .+.+++|+++++.|..++.++..+
T Consensus 268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 7777776543 478999999998888887764333
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=8.2e-08 Score=104.66 Aligned_cols=276 Identities=11% Similarity=0.022 Sum_probs=170.1
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeCC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~ 450 (954)
.+++++.++.|..+|..+|+.+-.... ..... ........+.+ ....++..+++++.++.|..+|.++|
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~-------~~~~~---~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSL-------AEKDG---WFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEEC-------CC------CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecC-------ccccc---cccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCC
Confidence 456777889999999999987533111 00000 00000122322 22235667888889999999999999
Q ss_pred cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCe-----EEEeeeccCCccEEE
Q 002196 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV-----YSICPHHKENIQFIF 525 (954)
Q Consensus 451 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~ 525 (954)
+..... ............. ++ .++.++.++.|..+|..+|+.+..+....... ...... . ..++
T Consensus 124 ~~~W~~---~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~--~~v~ 192 (376)
T 3q7m_A 124 TVAWQT---KVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F--GAAV 192 (376)
T ss_dssp CEEEEE---ECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T--TEEE
T ss_pred CEEEEE---eCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C--CEEE
Confidence 866522 2221111112222 34 47888899999999999999887776432211 111211 2 4688
Q ss_pred EEecCCeEEEEeCCCCCceeEeeCCCCc----eEE---EEECC--CCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC
Q 002196 526 STATDGKIKAWLYDNLGSRVDYDAPGHS----STM---MAYSA--DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 526 s~s~dg~i~iwd~~~~~~~~~~~~~~~~----v~~---~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
.++.++.+..+|..+++........... +.. +...| .+..+++++.++ .+..+|..+|+.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g----~l~~~d~~tG~~~w~~~~~ 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG----NLTALDLRSGQIMWKRELG 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS----CEEEEETTTCCEEEEECCC
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc----EEEEEECCCCcEEeeccCC
Confidence 8888999999999988776665432110 000 00111 245566665433 4999999999988776532
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCe
Q 002196 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIR 676 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 676 (954)
....+.. ++..++.++.++.|..+|..+++.+........ ..+..... .+..|+.++.+|.+.++|..++ +
T Consensus 269 ---~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG-~ 339 (376)
T 3q7m_A 269 ---SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDG-R 339 (376)
T ss_dssp ---CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTC-C
T ss_pred ---CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCC-c
Confidence 3334433 367888889999999999999998877752211 12223333 2567888889999999999998 4
Q ss_pred eEEEe
Q 002196 677 LLRTV 681 (954)
Q Consensus 677 ~~~~~ 681 (954)
.+...
T Consensus 340 ~~~~~ 344 (376)
T 3q7m_A 340 FVAQQ 344 (376)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44333
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=3.9e-08 Score=115.19 Aligned_cols=285 Identities=12% Similarity=0.092 Sum_probs=180.1
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCcccccc-ccCCCCCCeEEEEEccCCCEEEEEEcCCEEEEEEeeC
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS-LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~ 449 (954)
.+++++.++.|.-+|..+|+.+ |............ ...... ...+++ ++..|++++.|+.|..+|..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~~~--~~~~a~--~~~~v~v~~~dg~l~alD~~t 147 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCDVV--NRGVAL--WKGKVYVGAWDGRLIALDAAT 147 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSCSC--CCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred EEEEECCCCeEEEEECCCCcEE-------EEEcCCCCccccccccccCC--CCCceE--ECCEEEEEcCCCEEEEEECCC
Confidence 4566777899999999999876 3332211100000 000000 011222 467888888999999999999
Q ss_pred Ccceeeeeeeecc-c----CCEEEEEEecCCCceEEEEEcC------CCeEEEEECCCCceEEEeccCCCC---------
Q 002196 450 GDELRNHLEIEAH-V----GSVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEGHESP--------- 509 (954)
Q Consensus 450 ~~~~~~~~~~~~h-~----~~v~~~~~s~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------- 509 (954)
|+.+... ..+ . ..+.+--...++. ++.++. ++.|+.||..+|+.+..+......
T Consensus 148 G~~~W~~---~~~~~~~~~~~~~~~p~v~~~~---v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 148 GKEVWHQ---NTFEGQKGSLTITGAPRVFKGK---VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp CCEEEEE---ETTTTCCSSCBCCSCCEEETTE---EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred CCEEeee---cCCcCcCcCcccccCcEEECCE---EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 9876633 222 1 1121111112343 444443 799999999999998877543211
Q ss_pred -----------------------eEEEeeeccCCccEEEEEecCC-------------------eEEEEeCCCCCceeEe
Q 002196 510 -----------------------VYSICPHHKENIQFIFSTATDG-------------------KIKAWLYDNLGSRVDY 547 (954)
Q Consensus 510 -----------------------v~~~~~~~~~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~ 547 (954)
...+++.+.. ..++.++.++ .|..+|.++++....+
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~ 299 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY 299 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred cccccccccccCceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE
Confidence 0123444443 5777776654 5999999998887776
Q ss_pred eCCCC---------ceEEEEECCCC---CEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCC----------Ce----
Q 002196 548 DAPGH---------SSTMMAYSADG---ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR----------SV---- 601 (954)
Q Consensus 548 ~~~~~---------~v~~~~~s~~g---~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----------~i---- 601 (954)
....+ ....+....+| ..++.+.. ++.++++|..+|+.+..+...... .+
T Consensus 300 ~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~ 375 (677)
T 1kb0_A 300 QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK----NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAA 375 (677)
T ss_dssp ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGG
T ss_pred ecCCCcccccccCCCcEEEecccCCcEeeEEEEECC----CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccc
Confidence 54321 22233333467 45555543 456999999999998776532110 01
Q ss_pred --------------------EEEEEeCCCCEEEEEEC-------------------------------------------
Q 002196 602 --------------------GVVQFDTTKNRFLAAGD------------------------------------------- 618 (954)
Q Consensus 602 --------------------~~~~~~~~~~~l~~~~~------------------------------------------- 618 (954)
..++++|++..+++...
T Consensus 376 ~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 455 (677)
T 1kb0_A 376 ARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP 455 (677)
T ss_dssp GGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred cCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence 14688999888887643
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEec
Q 002196 619 EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 682 (954)
.|.|..||+.+++.+..+.... .+....+..++.+++.++.||.+++||..++ +.+..+.
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~ 515 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAP 515 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred ccEEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeee
Confidence 2789999999999998886532 3445556667888888999999999999999 5555554
No 236
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.10 E-value=5.6e-05 Score=87.00 Aligned_cols=474 Identities=10% Similarity=0.027 Sum_probs=252.1
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 511 (954)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 56778999998654221 11122 2346889999998776 566777889999999876544444443334567
Q ss_pred EEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 512 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
.+++.+... ++.++-...+.|.+.+++.................+++.|....|+...... ...|...++.......
T Consensus 84 GlAvD~~~~-~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~--~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLGK-NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG--KPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTTT-EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS--SCEEEEEETTSCSCEE
T ss_pred eEEEEeCCC-EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC--CCEEEEEeCCCCceEE
Confidence 788876542 5566666678899999876544443434445778999999766777654321 3458788876543333
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEE
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd 670 (954)
... . ......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~-~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP-N-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC-S-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC-C-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 333 2 23678899999887777776 677999999876544 333322 22345777765 44555555578899999
Q ss_pred ccCCCeeEEEeccccccceecchhccccCCccccccCCCCCcccccccccc-ccc-----cccccCCCCCCC-CCCcccc
Q 002196 671 NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA-PAA-----AMVGMSNDSRNF-TDVKPKI 743 (954)
Q Consensus 671 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~-~~~~~lv 743 (954)
..++. ....+.........+.+......+....=....+ .....|.... ... ....+.++.... +....++
T Consensus 235 k~tg~-~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng-~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll 312 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVMDILVFHSSRQSGWNECASSNG-HCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLL 312 (628)
T ss_dssp TTTCC-SCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGG-GCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEE
T ss_pred CCCCC-ceEEEecCCCCcceeeeeeecccccceEeccCCC-CcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceee
Confidence 87773 3333332221111111111100000000000000 0001111111 000 000111222211 1111222
Q ss_pred cccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec-CCeEEEeeccCCCCCCCCcccCCCCc
Q 002196 744 ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAP 822 (954)
Q Consensus 744 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-dg~v~lw~~~~~~~~~~g~~~~~~~i 822 (954)
.+....|+-..+.... .....++.. .-..+..++|.+.+..|+.+.. .+.|+.+++.....
T Consensus 313 -~s~~~~i~~i~l~~~~----~~~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~------------ 374 (628)
T 4a0p_A 313 -FSQKSAINRMVIDEQQ----SPDIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG------------ 374 (628)
T ss_dssp -EEETTEEEEECCCTTC----CCCEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------
T ss_pred -eeccceEEEEeccccc----CceEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc------------
Confidence 2222344433332111 001112221 2245778999997777766654 46676665331100
Q ss_pred cccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec--CCeEEEEEcccccEEEeeC-CCCCCeeEEEecCCCCce
Q 002196 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNI 899 (954)
Q Consensus 823 ~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~d~~~ 899 (954)
...+.....+......+..+|+...++.|..+. .+.|.+.++. |+....+. ........|++.|..|.+
T Consensus 375 -------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~l 446 (628)
T 4a0p_A 375 -------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYM 446 (628)
T ss_dssp -------EEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEE
T ss_pred -------eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeE
Confidence 001100000000234678999999877766554 6889999985 55554443 344668999999955655
Q ss_pred EEEEecCc--cEEEEeccccceEEEecCCccceeEEEEecCCCeEEEec
Q 002196 900 IAIGMEDS--SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 900 lasgs~dg--~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
+.+-.... .|...+++...........-...+.|++.++++.|.-+.
T Consensus 447 y~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 447 YFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp EEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEe
Confidence 55543332 466666653333222333345678899998766655443
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=3.1e-09 Score=117.25 Aligned_cols=259 Identities=14% Similarity=0.107 Sum_probs=166.8
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEE-e-CCCCEEEEEE------------------CCC
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF-D-TTKNRFLAAG------------------DEF 620 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~------------------~dg 620 (954)
+||++++++..+ +..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~~---~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDKA---NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEETT---TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcCC---CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 388999986543 4569999999999888665444346788887 5 9999999985 245
Q ss_pred eEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE-EEEEccCCCeeEEEeccccccceecchhccccC
Q 002196 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI-KILANADGIRLLRTVESRTFDASRVASAAIVKA 699 (954)
Q Consensus 621 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 699 (954)
.+.++|..+.+...++...+ .-..++++|+|+++++.+.+..- ...+..+.
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~------------------------- 227 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA------------------------- 227 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------
T ss_pred eEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccc-------------------------
Confidence 89999999999999987643 24678899999999988865311 00000000
Q ss_pred CccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccce
Q 002196 700 PAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV 779 (954)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v 779 (954)
..-..+.+.+....
T Consensus 228 ----------------------------------------------~~~d~v~V~~~~~~-------------------- 241 (595)
T 1fwx_A 228 ----------------------------------------------AEMDHIVVFNIAEI-------------------- 241 (595)
T ss_dssp ----------------------------------------------CSEEEEEEEEHHHH--------------------
T ss_pred ----------------------------------------------cccceEEEeeccce--------------------
Confidence 00012222222110
Q ss_pred EEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEE
Q 002196 780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859 (954)
Q Consensus 780 ~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 859 (954)
..+.++|++... +.|.+.|..+.. +..+...++ -.....++.+||||++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEE
Confidence 012233433322 235555433200 111100111 123566899999999998
Q ss_pred Eec--CCeEEEEEccccc------------EEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccc---------
Q 002196 860 SAS--GGKISLFNMMTFK------------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV--------- 916 (954)
Q Consensus 860 ~~s--dg~i~iwd~~~~~------------~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~--------- 916 (954)
+++ +++|.++|+.+.+ ...++. -......++|+| ||...++..-|+.|.+||+++
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 887 7899999998663 344444 334579999999 886666777899999999988
Q ss_pred -cceEEEecCCccc-----eeEEEEecCCCeEEEecC
Q 002196 917 -DEVKTKLKGHQKR-----ITGLAFSNTLNVLVSSGA 947 (954)
Q Consensus 917 -~~~~~~~~~h~~~-----V~~l~~s~dg~~l~s~s~ 947 (954)
.+.+.++..|-.+ -..++++|||++|+++..
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 5677777765432 123356899999988754
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=5.2e-09 Score=111.94 Aligned_cols=301 Identities=9% Similarity=0.067 Sum_probs=177.8
Q ss_pred EEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 468 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 468 ~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
+.....++. +..++.++.|..|| .+++....+......+.++.... + ..++.++.+ +..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~--~-g~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK--D-GTIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETT--T-TEECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEec--C-CcEEEecCc--EEEECC-CCcEEEEE
Confidence 344445665 77778889999999 88887766554444445555433 3 245555555 888875 33333333
Q ss_pred eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEEC
Q 002196 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (954)
Q Consensus 548 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 627 (954)
...........+. +..+++++.+ +.+..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|.
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~~----~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSMD----GHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECTT----SEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred ECCCCcccCceEE--CCEEEEEecC----CEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 2222222223333 4456665532 348999988 777766665433 456666766665 666778899999999
Q ss_pred CCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccC
Q 002196 628 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 707 (954)
Q Consensus 628 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 707 (954)
. ++.+...... ...+.++...+++.+.+. + +.+..+| .++.. ......
T Consensus 165 ~-g~~~~~~~~~--~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~-~~~~~~------------------------ 212 (330)
T 3hxj_A 165 D-GTEKWRFKTN--DAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTE-KWNFYA------------------------ 212 (330)
T ss_dssp T-SCEEEEEECS--SCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCE-EEEECC------------------------
T ss_pred C-CCEeEEEecC--CCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcE-EEEEcc------------------------
Confidence 8 8877777654 345777888888876554 3 7788888 55522 211110
Q ss_pred CCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecC
Q 002196 708 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 787 (954)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 787 (954)
....+.+++..++
T Consensus 213 -------------------------------------------------------------------~~~~~~~~~~~~~ 225 (330)
T 3hxj_A 213 -------------------------------------------------------------------GYWTVTRPAISED 225 (330)
T ss_dssp -------------------------------------------------------------------SSCCCSCCEECTT
T ss_pred -------------------------------------------------------------------CCcceeceEECCC
Confidence 0112334445556
Q ss_pred CceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEE
Q 002196 788 GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKIS 867 (954)
Q Consensus 788 g~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~ 867 (954)
|. |.+++.++.+..++.. +. .+|... . ....+.++.+.++|.+.+...+|.|.
T Consensus 226 g~-l~v~t~~~gl~~~~~~-------g~-------~~~~~~--------~----~~~~~~~~~~~~~g~l~v~t~~ggl~ 278 (330)
T 3hxj_A 226 GT-IYVTSLDGHLYAINPD-------GT-------EKWRFK--------T----GKRIESSPVIGNTDTIYFGSYDGHLY 278 (330)
T ss_dssp SC-EEEEETTTEEEEECTT-------SC-------EEEEEE--------C----SSCCCSCCEECTTSCEEEECTTCEEE
T ss_pred Ce-EEEEcCCCeEEEECCC-------CC-------EeEEee--------C----CCCccccceEcCCCeEEEecCCCCEE
Confidence 54 4455555555555311 00 011110 0 11223345666677655554488999
Q ss_pred EEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccc
Q 002196 868 LFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (954)
Q Consensus 868 iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~ 916 (954)
.+|. +++.+..+......+.++...+ +|+ |..|+.+|.+++...+.
T Consensus 279 ~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 279 AINP-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp EECT-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEEEEEC--
T ss_pred EECC-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEEEEeccc
Confidence 9996 7887777766666788888877 776 45588999999887654
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=8.9e-09 Score=110.09 Aligned_cols=261 Identities=11% Similarity=0.080 Sum_probs=166.4
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
+..+..+|. +..|+.++.|..|| .+++.... ...+...+.++...++|..++ ++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence 344555665 45666788899999 88775432 111234456777777776444 4343
Q ss_pred EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCC
Q 002196 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 520 (954)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. ++....+..+...+.++....++
T Consensus 80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g- 148 (330)
T 3hxj_A 80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG- 148 (330)
T ss_dssp -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-
T ss_pred -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-
Confidence 778886 5554432 22222223333343 44 37788889999999988 88777766555555555554332
Q ss_pred ccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCC
Q 002196 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600 (954)
Q Consensus 521 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 600 (954)
.++.++.++.|..||.. +.....+......+.++...+++...+.. . . +..+| .+++....+..... .
T Consensus 149 --~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~-~----l~~~d-~~g~~~~~~~~~~~-~ 216 (330)
T 3hxj_A 149 --TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--D-K----VYAIN-PDGTEKWNFYAGYW-T 216 (330)
T ss_dssp --CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--S-S----EEEEC-TTSCEEEEECCSSC-C
T ss_pred --EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--C-E----EEEEC-CCCcEEEEEccCCc-c
Confidence 47778888999999988 66555665555567777888888755543 2 2 89999 77777766665433 6
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 601 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
+.++...+++. +..++.++.|..+|. +++.+..+... ...+..+.+.+++. |..++.+|.+..+|. ++
T Consensus 217 ~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 217 VTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTDT-IYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp CSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTSC-EEEECTTCEEEEECT-TS
T ss_pred eeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCCe-EEEecCCCCEEEECC-CC
Confidence 77778887764 566677788888874 56666666543 22345566666664 556777888888885 44
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=1.3e-07 Score=100.73 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=149.3
Q ss_pred CCCCEEEEEEeCCCCceEEEEEeCCCC----eEEEEEe------cCCCCCeEEEEEeCCCCEEEEEECC------CeEEE
Q 002196 561 ADGARLFSCGTNKEGESYLVEWNESEG----AVKRTYH------GLGKRSVGVVQFDTTKNRFLAAGDE------FMIKF 624 (954)
Q Consensus 561 ~~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i 624 (954)
+++++|++.+.. +..|.++|..+. +....+. .........+.++|+| .++++..+ |.|.+
T Consensus 93 ~~r~~l~v~~l~---s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLR---SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTT---TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCC---CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 889999987743 446999998755 6666663 1111134567888999 77766554 78999
Q ss_pred EECCCCceeEEEecCCCC-CCcceEEECCCCCEEEEEe-------------------CCCcEEEEEccCCCeeEEEeccc
Q 002196 625 WDMDNVNLLASIDADGGL-QASPCIRFNKEGILLAVST-------------------NDNGIKILANADGIRLLRTVESR 684 (954)
Q Consensus 625 wd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~ 684 (954)
+|..+++.+..+...... ..-..+.|+|+++.+++.. .+.+|.+||+.++ +..+.+.-
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~v- 246 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTL- 246 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEES-
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEec-
Confidence 999999999998754322 2234688999999888774 2467777777665 33333321
Q ss_pred cccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCc
Q 002196 685 TFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQ 764 (954)
Q Consensus 685 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~ 764 (954)
T Consensus 247 -------------------------------------------------------------------------------- 246 (462)
T 2ece_A 247 -------------------------------------------------------------------------------- 246 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEecCCCCCccceEEEEE--ecCCceEEEeec------CCeEEEeeccCCCCCCCCcccCCCCccccCCCCccccccc
Q 002196 765 CRSLRLPDNLTAMRVSRLIY--TNSGLAILALAS------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836 (954)
Q Consensus 765 ~~~~~~~~~~~~~~v~~~~~--spdg~~l~~~~~------dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~ 836 (954)
.. .......+.| +|+|+++.+++. +++|.+|....+ ... ..++.++.+..... .
T Consensus 247 ------g~--~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g------~~~---~~~vIdi~~~~v~~-~ 308 (462)
T 2ece_A 247 ------GE--ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG------KWN---AEKVIEIPAEPLEG-N 308 (462)
T ss_dssp ------CT--TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT------EEE---EEEEEEECCEECCS-S
T ss_pred ------CC--CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC------cee---EEEEEeCCCccccc-c
Confidence 00 0112333444 999998887775 468877765421 111 11111222211111 0
Q ss_pred CC----CC-CCCCCccEEEeccCCCeEEEec--CCeEEEEEccc---ccEEEeeCCCC--------------CCeeEEEe
Q 002196 837 IS----DT-NPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMT---FKTMTTFMPPP--------------PAATFLAF 892 (954)
Q Consensus 837 ~~----~~-~~~~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~---~~~~~~~~~h~--------------~~v~~l~~ 892 (954)
+. +. +.......+.+|+||++|.++. .+.|.+||+.. .+.+..+.... +....+++
T Consensus 309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 10 00 0124578899999999998887 68999999852 34555543210 13688999
Q ss_pred cCCCCceEEEEe
Q 002196 893 HPQDNNIIAIGM 904 (954)
Q Consensus 893 sp~d~~~lasgs 904 (954)
|| ||++|+++.
T Consensus 389 Sp-DGk~LyVaN 399 (462)
T 2ece_A 389 SR-DGRRVYVTN 399 (462)
T ss_dssp CT-TSSEEEEEC
T ss_pred cC-CCCEEEEEc
Confidence 99 898888887
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=9.1e-08 Score=101.85 Aligned_cols=262 Identities=14% Similarity=0.143 Sum_probs=164.1
Q ss_pred cceeecCCC---CCcceEEEec--C-CCCeeEEEE-----------c--CCCCeEEEEEEcCCeEEEEeCCCC----cee
Q 002196 336 GQSSYSTDD---LPKTVVMTLN--Q-GSAVKSMDF-----------H--PVQQILLVVGTNMGDVMLWEVGSR----ERI 392 (954)
Q Consensus 336 ~~~~~~~~~---~~~~~~~~~~--h-~~~V~~~~~-----------s--p~g~~ll~~g~~dg~i~iwd~~~~----~~~ 392 (954)
+|++...+. +..+++..+. + .++.-.+.| + ++++++++.|..++.|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 466665542 3355665543 2 224444444 7 899999999999999999999754 222
Q ss_pred eeeeeEEEeccCCCccccccccCCC-CCCeEEEEEccCCCEEEEEEcC------CEEEEEEeeCCcceeeeeeeeccc-C
Q 002196 393 AVKSFKVWELGACSMPLQASLSSDY-TASVNRVMWSPDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHV-G 464 (954)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~-~ 464 (954)
.+ .+ ...+.... ...-..+..+|+| .++++..+ |.|.++|.++++.+.... ..... .
T Consensus 124 k~-----ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~ 188 (462)
T 2ece_A 124 KV-----IE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQY 188 (462)
T ss_dssp EE-----EC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCC
T ss_pred ee-----ec--------hhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCcc
Confidence 11 10 00000001 1234567889999 77776555 789999999988766322 11122 2
Q ss_pred CEEEEEEecCCCceEEEEEc-------------------CCCeEEEEECCCCceEEEeccCC--CCeEEEeeeccCCccE
Q 002196 465 SVNDLAFSYPNKQLSVVTCG-------------------EDRVIKVWDAVTGTKQYIFEGHE--SPVYSICPHHKENIQF 523 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~ 523 (954)
.-..+.|+|+++ .+++.. .+.+|.+||+.+++.+.++.... .....+.|..++++++
T Consensus 189 ~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~ 266 (462)
T 2ece_A 189 LAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLM 266 (462)
T ss_dssp CCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCE
T ss_pred ccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCE
Confidence 344688999999 566663 36899999999998888776431 2344555644455567
Q ss_pred EEEEe------cCCeEEEEeCCCCCce--eEe--eC-------C---------CCceEEEEECCCCCEEEEEEeCCCCce
Q 002196 524 IFSTA------TDGKIKAWLYDNLGSR--VDY--DA-------P---------GHSSTMMAYSADGARLFSCGTNKEGES 577 (954)
Q Consensus 524 l~s~s------~dg~i~iwd~~~~~~~--~~~--~~-------~---------~~~v~~~~~s~~g~~l~~~~~~~~~~~ 577 (954)
++.++ .+++|.+|..+.+... ..+ .. . ......+.+|+||++|+++... ..
T Consensus 267 aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg---~d 343 (462)
T 2ece_A 267 GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG---IG 343 (462)
T ss_dssp EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT---TT
T ss_pred EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC---CC
Confidence 66665 5678877766542110 110 00 0 2356789999999999998753 44
Q ss_pred EEEEEeCC---CCeEEEEEecCCC---------C----CeEEEEEeCCCCEEEEEE
Q 002196 578 YLVEWNES---EGAVKRTYHGLGK---------R----SVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 578 ~i~iwd~~---~~~~~~~~~~~~~---------~----~i~~~~~~~~~~~l~~~~ 617 (954)
.|.+||+. +.+.+..+..... . ....+.++|||++|+++.
T Consensus 344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 69999975 3455655544311 0 246789999999999887
No 242
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.02 E-value=4.3e-05 Score=87.88 Aligned_cols=460 Identities=10% Similarity=0.009 Sum_probs=233.4
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE
Q 002196 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (954)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (954)
...-..+..++|++.+..+..+-...+.|..+++........ +....-.....+++.+.++.
T Consensus 36 ~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ 97 (619)
T 3s94_A 36 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEK 97 (619)
T ss_dssp CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTE
T ss_pred EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCE
Confidence 334557889999998876776665678888888876521110 01222256889999997666
Q ss_pred EEEE-EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEE-cCCCeEEEEECCCCceEEEeccCCCCe
Q 002196 433 FGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 433 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
|..+ ...+.|.+.++++..... .+...-.....+++.|.+.. ++++- +..+.|...++............-...
T Consensus 98 ly~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P 173 (619)
T 3s94_A 98 LYWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 173 (619)
T ss_dssp EEEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence 6555 456889999987643221 12233445778999998665 34443 334677777765433333333334456
Q ss_pred EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
+.+++.+... .+.++-...+.|...|++.................+++..+ .++.+.. ....|...|..+++..
T Consensus 174 ~Glald~~~~-~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTT-EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred cEEEEEccCC-EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 7888886542 44455556678888888754333322212223346666544 5555432 1334777777665433
Q ss_pred EEEecCCC------------------------CCeEEEEE-----------eCCC---------------CEEEEEECCC
Q 002196 591 RTYHGLGK------------------------RSVGVVQF-----------DTTK---------------NRFLAAGDEF 620 (954)
Q Consensus 591 ~~~~~~~~------------------------~~i~~~~~-----------~~~~---------------~~l~~~~~dg 620 (954)
..+..... .....+++ .|.| .+|+.+ ..+
T Consensus 248 ~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~ 326 (619)
T 3s94_A 248 REIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRT 326 (619)
T ss_dssp EECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESS
T ss_pred EEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-ccc
Confidence 22211000 00111111 1111 122222 234
Q ss_pred eEEEEECCCCceeE-EEecCCCCCCcceEEECCCCCEEE-EEeCCCcEEEEEccCCCeeEEEeccccccceecchhcccc
Q 002196 621 MIKFWDMDNVNLLA-SIDADGGLQASPCIRFNKEGILLA-VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVK 698 (954)
Q Consensus 621 ~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 698 (954)
.|+..++....... .+.. .....+..++|++.+..|. +-...+.|+.+++... .....+...-.....+
T Consensus 327 ~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~-~~~~v~~~~~~~p~Gl------- 397 (619)
T 3s94_A 327 DLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS-GSQFVVTAQIAHPDGI------- 397 (619)
T ss_dssp CEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEE-------
T ss_pred ceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC-ccEEEEECCCCCcCce-------
Confidence 55555665433211 1111 1123456788888544444 4445677888777643 1111111100000000
Q ss_pred CCccccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccc
Q 002196 699 APAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778 (954)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 778 (954)
++. ...++..++-+..+.|.+.++... ....+. . ..-..
T Consensus 398 -----------------------------AvD-----~~~~~lY~tD~~~~~I~v~~~~G~----~~~~l~-~--~~l~~ 436 (619)
T 3s94_A 398 -----------------------------AVD-----WVARNLYWTDTGTDRIEVTRLNGT----MRKILI-S--EDLEE 436 (619)
T ss_dssp -----------------------------EEE-----TTTTEEEEEETTTTEEEEEETTSC----SCEEEE-C--TTCCS
T ss_pred -----------------------------EEe-----cccCcEEEEeCCCCcEEEEeCCCC----eEEEEE-E--CCCCC
Confidence 000 011233344444566766666531 112221 1 12356
Q ss_pred eEEEEEecCCceEEEeecC--CeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCC
Q 002196 779 VSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (954)
Q Consensus 779 v~~~~~spdg~~l~~~~~d--g~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 856 (954)
...+++.|....|..+... +.|.-.++. |.. ...+ ... .-.....++++++++
T Consensus 437 P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-------G~~-------------~~~l---~~~--~l~~P~GlalD~~~~ 491 (619)
T 3s94_A 437 PRAIVLDPMVGYMYWTDWGEIPKIERAALD-------GSD-------------RVVL---VNT--SLGWPNGLALDYDEG 491 (619)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETT-------SCS-------------CEEE---ECS--SCSCEEEEEEETTTT
T ss_pred eeeEEEEcCCCcEEEecCCCCCEEEEEccC-------CCc-------------cEEE---EeC--CCCCCeeeEEcccCC
Confidence 7899999975555555432 344333322 110 0011 111 234677899999888
Q ss_pred eEEEec--CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccc
Q 002196 857 YVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (954)
Q Consensus 857 ~la~~s--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~ 918 (954)
.|..+. .+.|..+++........+...-.....|++.. +.++.+-...+.|...|..+|.
T Consensus 492 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 492 KIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred EEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 888776 57899999864433322332333455667654 3444444455677777777763
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=1.3e-07 Score=110.56 Aligned_cols=82 Identities=10% Similarity=0.111 Sum_probs=57.9
Q ss_pred CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccce-eEEEEecCCC-
Q 002196 863 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLN- 940 (954)
Q Consensus 863 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V-~~l~~s~dg~- 940 (954)
+|.|..||+.+|+.+.+...+. .+....+.. .+.++++|+.||.++.||.++|+.+..+....... .-+.+..+|+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 3789999999999988776332 333334444 56688889999999999999999998887543221 3345567887
Q ss_pred eEEEec
Q 002196 941 VLVSSG 946 (954)
Q Consensus 941 ~l~s~s 946 (954)
+++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444443
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=3.2e-10 Score=122.79 Aligned_cols=190 Identities=6% Similarity=-0.040 Sum_probs=110.6
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCC
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 508 (954)
++..+++++.||.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678899999999999999999987763 333 4455555666776 577778999999999999988777654321
Q ss_pred CeEEEeeeccC-CccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 509 PVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 509 ~v~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
... ...|.- .+..+++++.|+.++.||..+++....+..+. ...++|++..+++++.+ +.++.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d----g~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTE----YTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEE----EEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecC----CEEEEEECCCC
Confidence 111 011111 22578888899999999999888776655433 23456788888887653 45999999999
Q ss_pred eEEEEEecCCCCCeEEEEEeCCC---CEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
+.+..+.... .....+.++. ..+++++.+|.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8765554221 1222333332 5677888999999999999998887764
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=5.8e-06 Score=84.87 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=145.2
Q ss_pred CCeEEEEEccCCCEEEEEE-cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 419 ASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
..+..++|+++++.|..+. .++.|.+++..++.... .+.........+++.+++.. ++++....+.|.+++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4578999999777666554 46789999987654321 22222346889999998765 4666677889999998654
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEec---CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCC
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 574 (954)
...............+++++.. ..++.+.. .+.|..++++.................+++++++..|+.+...
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~-- 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-- 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT--
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC--
Confidence 3322232222456788888754 34444443 4688888876543332222333467899999998888877532
Q ss_pred CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
...|..+|.........+... . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 188 -~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 188 -THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp -TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred -CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 446999998765443333332 2 34566654 45555555 66899999999999988886432 223577888887
Q ss_pred CC
Q 002196 654 GI 655 (954)
Q Consensus 654 ~~ 655 (954)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.90 E-value=4.2e-06 Score=95.65 Aligned_cols=372 Identities=11% Similarity=0.011 Sum_probs=206.0
Q ss_pred EEEEcC-CCeEEEEEC-CCCceEEEeccCCCC-e----------EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE
Q 002196 480 VVTCGE-DRVIKVWDA-VTGTKQYIFEGHESP-V----------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD 546 (954)
Q Consensus 480 l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 546 (954)
++.++. ++.|.-+|. .+|+.+..+...... + ..+++ . +..++.++.|+.+..+|..+++....
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--G--AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--E--CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 666676 899999999 899998877533210 0 11122 1 25788888999999999999888776
Q ss_pred eeCCCC----ceE-EEEECCCCCEEEEEEeCC--CCceEEEEEeCCCCeEEEEEecCCCC--------------------
Q 002196 547 YDAPGH----SST-MMAYSADGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGKR-------------------- 599 (954)
Q Consensus 547 ~~~~~~----~v~-~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 599 (954)
...... .+. ..... ++ .+++++... ..++.|..+|..+|+.+.++......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred ecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 554321 111 11111 33 555554311 01456999999999998887653210
Q ss_pred -----------------CeEEEEEeCCCCEEEEEECC----------------CeEEEEECCCCceeEEEecCCCCC---
Q 002196 600 -----------------SVGVVQFDTTKNRFLAAGDE----------------FMIKFWDMDNVNLLASIDADGGLQ--- 643 (954)
Q Consensus 600 -----------------~i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~--- 643 (954)
....+++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 00135667777777776632 369999999999998887542210
Q ss_pred -Ccce---EEECCCCC---EEEEEeCCCcEEEEEccCCCeeEEEecccc--ccceecchhccccCCccccccCCCCCccc
Q 002196 644 -ASPC---IRFNKEGI---LLAVSTNDNGIKILANADGIRLLRTVESRT--FDASRVASAAIVKAPAIGTFGSANANVGT 714 (954)
Q Consensus 644 -~v~~---v~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (954)
.+.. +....+|+ .++.++.+|.++++|..+++ .+....... .....+..
T Consensus 299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN-LIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECT---------------------
T ss_pred ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC-EEeeecccCCccccccccc---------------------
Confidence 1111 22223674 67788889999999999994 443332111 00000000
Q ss_pred cccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEe
Q 002196 715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (954)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 794 (954)
..+..+.... +.. .+.....+..|...-...-..++|+|+...+++.
T Consensus 357 ----------------------~~g~p~~~~~-------~~~----~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~ 403 (571)
T 2ad6_A 357 ----------------------KTGTPVRDPE-------FAT----RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAG 403 (571)
T ss_dssp ----------------------TTCSEEECGG-------GCC----CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred ----------------------cCCceecccc-------cCC----CCCCCceEECCCCccccCCCCceECCCCCEEEEE
Confidence 0000000000 000 0000001111110001112457899999988888
Q ss_pred ecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccc
Q 002196 795 ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF 874 (954)
Q Consensus 795 ~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~ 874 (954)
..+....++..... ...+.. .-..-..+..+|.+. + ...+|.|..||..++
T Consensus 404 ~~~~~~~~~~~~~~------------------~~~g~~---------~~g~~~~~~~~~~~~-~-~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 404 LNHICMDWEPFMLP------------------YRAGQF---------FVGATLAMYPGPNGP-T-KKEMGQIRAFDLTTG 454 (571)
T ss_dssp EECEEEEEEECCCC------------------CCTTSC---------CCCEEEEEEECTTST-T-SCCCEEEEEECTTTC
T ss_pred chhccccccccccc------------------cccCCc---------cccccceeccCcccc-C-CCCCCeEEEEECCCC
Confidence 87766655532210 000110 001111123334332 0 012688999999999
Q ss_pred cEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccc-eeEEEEecCCCeEE
Q 002196 875 KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLNVLV 943 (954)
Q Consensus 875 ~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~ 943 (954)
+.+.++... ..+....+.. .+.++++++.||.|+.||.++|+.+.++...... -..+.+..+|+.++
T Consensus 455 ~~~W~~~~~-~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 455 KAKWTKWEK-FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CEEEEecCC-CCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 988877632 2233333333 3456777999999999999999999888743221 22345667887544
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=1.1e-05 Score=82.89 Aligned_cols=243 Identities=12% Similarity=0.035 Sum_probs=150.5
Q ss_pred CCEEEEEEcCCEEEEEEeeCCccee--eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCC
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELR--NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 507 (954)
|.+|+.+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..+|...+.....+....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 345555543 478888887654211 00112222345789999998775 46677778899999987665444443333
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
.....+++.+... ...++....+.|.+++++.................++++|++..|+.+.... ....|..+++...
T Consensus 79 ~~p~~ia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~ 156 (267)
T 1npe_A 79 GSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (267)
T ss_dssp CCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred CCccEEEEEecCC-eEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence 5678888876542 4555556678899999875443333332234678999999877777665321 1345778877533
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
. ...+..........+++++++..|+.+. ..+.|.++|.........+.. ......++.. ++.++++....+.|
T Consensus 157 ~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v 231 (267)
T 1npe_A 157 N-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSV 231 (267)
T ss_dssp C-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCCeE
Confidence 2 2223212222578899999887776665 668999999976544444332 1233566654 34444444456899
Q ss_pred EEEEccCCCeeEEEec
Q 002196 667 KILANADGIRLLRTVE 682 (954)
Q Consensus 667 ~iwd~~~~~~~~~~~~ 682 (954)
.++|..++ +....+.
T Consensus 232 ~~~d~~~g-~~~~~i~ 246 (267)
T 1npe_A 232 IAMDLAIS-KEMDTFH 246 (267)
T ss_dssp EEEETTTT-EEEEEEC
T ss_pred EEEeCCCC-CceEEEc
Confidence 99999888 5555553
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.83 E-value=6.8e-07 Score=98.76 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=157.3
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeee------------------------------cc------cCCEEEEEEec---
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIE------------------------------AH------VGSVNDLAFSY--- 473 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------~h------~~~v~~~~~s~--- 473 (954)
+.+|+..|.++|+-+.+++.++.+..|. .+ .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 4567788889988888776655321111 00 12223355555
Q ss_pred --CCCceEEEEEcCCCeEEEEECCCCceEEEecc-CCCCeEEEeeeccCCccEEEEEe------------------cCCe
Q 002196 474 --PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTA------------------TDGK 532 (954)
Q Consensus 474 --~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s------------------~dg~ 532 (954)
||++ ++++...+..|.+.|+.+.++...+.- .......+++..-+++.++++++ .++.
T Consensus 98 ~~DG~~-lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCE-EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7886 466777788999999999998885542 22446777763213346787774 3467
Q ss_pred EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC----------------------------------ceE
Q 002196 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG----------------------------------ESY 578 (954)
Q Consensus 533 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~----------------------------------~~~ 578 (954)
+.+.|.++.+........+ ....++++|+|+++++.+.+.+. -+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 8999999877666665434 45678899999999998855311 012
Q ss_pred EEEEeCCC--CeE-EEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCc------------eeEEEecCCCC
Q 002196 579 LVEWNESE--GAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN------------LLASIDADGGL 642 (954)
Q Consensus 579 i~iwd~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~ 642 (954)
+.+.|.++ ++. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ....+...
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--- 330 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--- 330 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---
T ss_pred EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---
Confidence 66777776 444 44444322 456789999999988887 78899999998653 23333221
Q ss_pred CCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 643 QASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 643 ~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.....++|+|+|...++...|+.|.+||+.+
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 2457899999995455667799999999876
No 249
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.82 E-value=0.00057 Score=78.60 Aligned_cols=203 Identities=8% Similarity=-0.028 Sum_probs=125.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEE
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 434 (954)
.-..+..++|++.+..+..+-..++.|..+++........ ..........+++.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v-------------------~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV-------------------VEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------ECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE-------------------EeCCCCCcceEEEEeCCCEEE
Confidence 3457889999998887777777788999999876533221 111224567899998766665
Q ss_pred EE-EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEE-cCCCeEEEEECCCCceEEEeccCCCCeEE
Q 002196 435 VA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (954)
Q Consensus 435 s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 512 (954)
.+ ...+.|.+.+++...... .+...-.....+++.|.... ++++- +..+.|...++......... ..-.....
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~G 170 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANG 170 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEE
T ss_pred EEECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcce
Confidence 55 446788998887643211 12233345789999986664 34443 33578888887654433333 34456778
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
+++.+... .+.++-...+.|..+|++...... +.........+++.. ..++..... ...|...|..+++
T Consensus 171 lalD~~~~-~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~~---~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 171 LTIDYAKR-RLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDWS---RRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTTT-EEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEETT---TTEEEEEETTTCC
T ss_pred EEEccccC-EEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecCC---CCEEEEEECCCCC
Confidence 88887542 444555567889999987654433 222333456777754 355554321 3347777766654
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.81 E-value=1.8e-05 Score=90.42 Aligned_cols=377 Identities=11% Similarity=0.043 Sum_probs=204.2
Q ss_pred EEEEcCCCeEEEEECCCCceEEEeccCCCCe---------EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 002196 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPV---------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (954)
Q Consensus 480 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 550 (954)
++.++.++.|..+|..+|+.+..+....... ..+++ .. ..++.++.|+.|..+|.++++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~--~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YG--DKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ET--TEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--EC--CEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4555553449999999999988776432210 11122 12 57888899999999999999887765543
Q ss_pred CC----ceE-EEEECC---CCC-EEEEEEeCC--CCceEEEEEeCCCCeEEEEEecCCC---------------------
Q 002196 551 GH----SST-MMAYSA---DGA-RLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGK--------------------- 598 (954)
Q Consensus 551 ~~----~v~-~~~~s~---~g~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 598 (954)
.. .+. ...+.. +|+ .+++++... ..++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455443211 1245799999999998876643210
Q ss_pred -------------------CCeEEEEEeCCCCEEEEEEC--------------------C----CeEEEEECCCCceeEE
Q 002196 599 -------------------RSVGVVQFDTTKNRFLAAGD--------------------E----FMIKFWDMDNVNLLAS 635 (954)
Q Consensus 599 -------------------~~i~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 635 (954)
..-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777778887763 2 6899999999999988
Q ss_pred EecCCCCC----Ccce-EEEC---CCCC---EEEEEeCCCcEEEEEccCCCeeEEEecccc--ccceecchhccccCCcc
Q 002196 636 IDADGGLQ----ASPC-IRFN---KEGI---LLAVSTNDNGIKILANADGIRLLRTVESRT--FDASRVASAAIVKAPAI 702 (954)
Q Consensus 636 ~~~~~~~~----~v~~-v~~s---~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~ 702 (954)
++...+.. .+.. +.+. .+|+ .++.++.+|.++++|..++ +.+....... .....+...
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~-------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNAFPFVDNITWASHIDLK-------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSSCCCSEEEECTT--------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEecccccccCcccccccccc--------
Confidence 86532210 1111 2222 4674 7888999999999999999 4444433221 011100000
Q ss_pred ccccCCCCCccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEE
Q 002196 703 GTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRL 782 (954)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 782 (954)
.+ .+.. ...+.+.. +.. .+ ......+..|...-...-..+
T Consensus 378 -------------~g---~p~~-~~~~~~~~--------~~~--~~-------------~~~~~~~~~P~~~Gg~~w~~~ 417 (582)
T 1flg_A 378 -------------TG---RPVE-REGQRPPL--------PEP--GQ-------------KHGKAVEVSPPFLGGKNWNPM 417 (582)
T ss_dssp -------------TC---CEEE-CTTCSCCC--------CCT--TC-------------SSCCCEEESSCTTCSSCSSCC
T ss_pred -------------CC---CEeE-ccccCCcc--------ccc--cc-------------cCCCceEECcCCccccCCCCc
Confidence 00 0000 00000000 000 00 000001111211111112357
Q ss_pred EEecCCceEEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEec
Q 002196 783 IYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS 862 (954)
Q Consensus 783 ~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~s 862 (954)
+++|+...+++...+-...++.... ....+. ...-..+...|++ ..
T Consensus 418 a~dp~~g~~yv~~~~~~~~~~~~~~------------------~~~~g~-----------~~~g~~~~~~p~~-----~~ 463 (582)
T 1flg_A 418 AYSQDTGLFYVPANHWKEDYWTEEV------------------SYTKGS-----------AYLGMGFRIKRMY-----DD 463 (582)
T ss_dssp EECTTTCCEEEEEECEEEEEEECCC------------------CCCTTS-----------CCCCEEEEEEESC-----SS
T ss_pred eECCCCCEEEEechhcceeeecccc------------------cccCCC-----------ceeccceeecCCC-----CC
Confidence 8899888787777665555443210 000011 0001112222331 12
Q ss_pred -CCeEEEEEcccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccce-eEEEEecCCC
Q 002196 863 -GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLN 940 (954)
Q Consensus 863 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V-~~l~~s~dg~ 940 (954)
+|.|..||+.+|+.+.+...+. ++..-.... .+.++++|+.||.++.||.++|+.+.+++.....+ .-+.|..||+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 6889999999999887765332 222212222 34577789999999999999999999887544322 2367778987
Q ss_pred -eEEEe
Q 002196 941 -VLVSS 945 (954)
Q Consensus 941 -~l~s~ 945 (954)
|+++.
T Consensus 542 qYv~~~ 547 (582)
T 1flg_A 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 44443
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=1.9e-09 Score=116.78 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=102.0
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC-ceE-E
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SST-M 556 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~-~ 556 (954)
.+++++.|+.|+.||..+|+.+..+.. +.+.+..+.. ++..+++++.||.|+.||..+++.......+.. .+. +
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc--CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 588999999999999999999988876 4444443333 235677778999999999988776554433211 010 0
Q ss_pred EEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEE
Q 002196 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 636 (954)
..+. ++..+++++. ++.++.||..+|+.+..+..+.. ..++|++..+++++.|+.|+.||..+|+.+..+
T Consensus 87 p~~~-~~~~v~~g~~----dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 87 PCRS-SDGILYMGKK----QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp SCC------CCCCEE----EEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ceEe-cCCEEEEEeC----CCEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 1111 3345555554 44599999999998887765431 345678889999999999999999999887766
Q ss_pred ecCCCCCCcceEEECCCC---CEEEEEeCCCcEEEEEccCCCe
Q 002196 637 DADGGLQASPCIRFNKEG---ILLAVSTNDNGIKILANADGIR 676 (954)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~---~~l~s~~~dg~i~iwd~~~~~~ 676 (954)
.... ....+++.+. ..+++++.||.++.||..++..
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 5321 1223333332 4566788999999999999943
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=3.4e-06 Score=98.65 Aligned_cols=197 Identities=11% Similarity=0.105 Sum_probs=128.6
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCe-----------EEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV-----------YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 547 (954)
.++.++.++.|..+|..+|+.+..+....... ..+.+ . +..++.++.|+.|..+|..+++....+
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--W--GDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--E--BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--E--CCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 36777788999999999999998876432211 11122 1 257888899999999999999888776
Q ss_pred eCCCC-ceEEEEECC--CCCEEEEEEeCC--CCceEEEEEeCCCCeEEEEEecCCC------------------------
Q 002196 548 DAPGH-SSTMMAYSA--DGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGK------------------------ 598 (954)
Q Consensus 548 ~~~~~-~v~~~~~s~--~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 598 (954)
..... ....+..+| .+..++++..+. ..++.|..+|..+|+.+..+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 54321 000000111 133455543221 1246799999999999988763210
Q ss_pred ------CCeEEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCceeEEEecCCCC-------CCcc
Q 002196 599 ------RSVGVVQFDTTKNRFLAAGDEF-------------------MIKFWDMDNVNLLASIDADGGL-------QASP 646 (954)
Q Consensus 599 ------~~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 646 (954)
.....+++.|+...++.++.++ .|..+|..+|+.+..++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 0112467888888998888776 3999999999999888753221 1111
Q ss_pred eEEECCCCC---EEEEEeCCCcEEEEEccCCCeeEEE
Q 002196 647 CIRFNKEGI---LLAVSTNDNGIKILANADGIRLLRT 680 (954)
Q Consensus 647 ~v~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~ 680 (954)
...+..+|+ .++.++.+|.++++|..+| +++..
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~ 339 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISA 339 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEE
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEecc
Confidence 222223664 6888999999999999999 44433
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=1.3e-05 Score=91.30 Aligned_cols=382 Identities=12% Similarity=0.024 Sum_probs=206.4
Q ss_pred EEEEEcC-CCeEEEEEC-CCCceEEEeccCCCC-----------eEEEeeeccCC--ccEEEEEecCCeEEEEeCCCCCc
Q 002196 479 SVVTCGE-DRVIKVWDA-VTGTKQYIFEGHESP-----------VYSICPHHKEN--IQFIFSTATDGKIKAWLYDNLGS 543 (954)
Q Consensus 479 ~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 543 (954)
.++.++. ++.|.-+|. .+|+.+..+...... ...+++.+..+ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 3666777 899999999 899998877643211 11223322121 12388888999999999999888
Q ss_pred eeEeeCCCC----ceEE-EEECCCCCEEEEEEeCC--CCceEEEEEeCCCCeEEEEEecCCCC-----------------
Q 002196 544 RVDYDAPGH----SSTM-MAYSADGARLFSCGTNK--EGESYLVEWNESEGAVKRTYHGLGKR----------------- 599 (954)
Q Consensus 544 ~~~~~~~~~----~v~~-~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~----------------- 599 (954)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|.++|+.+..+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776554321 1111 111 134 444443211 02457999999999998887654210
Q ss_pred --------------------CeEEEEEeCCCCEEEEEECC----------------CeEEEEECCCCceeEEEecCCCCC
Q 002196 600 --------------------SVGVVQFDTTKNRFLAAGDE----------------FMIKFWDMDNVNLLASIDADGGLQ 643 (954)
Q Consensus 600 --------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 643 (954)
.-..+++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00134667778888887765 389999999999998887643311
Q ss_pred ----Ccce---EEEC-CCC---CEEEEEeCCCcEEEEEccCCCeeEEEecccc--ccceecchhccccCCccccccCCCC
Q 002196 644 ----ASPC---IRFN-KEG---ILLAVSTNDNGIKILANADGIRLLRTVESRT--FDASRVASAAIVKAPAIGTFGSANA 710 (954)
Q Consensus 644 ----~v~~---v~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 710 (954)
.... +... .+| ..++.++.+|.++++|..+++ .+....... .....+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~lw~~~~~~~~~~~~~~~~----------------- 363 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA-LVSANKLDDTVNVFKSVDL----------------- 363 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC-EEEEEESSTTCCSEEEECT-----------------
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC-EeecccccCCccccccccc-----------------
Confidence 0111 2222 467 567778899999999999994 443332111 00000000
Q ss_pred CccccccccccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCce
Q 002196 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLA 790 (954)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 790 (954)
..++.+. +......+.....+..|...-...-..++++|+...
T Consensus 364 --------------------------~~g~p~~-----------~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~ 406 (599)
T 1w6s_A 364 --------------------------KTGQPVR-----------DPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKREL 406 (599)
T ss_dssp --------------------------TTCCEEE-----------CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred --------------------------CCCceee-----------ccccCCCCCCCccEeccCcccccCCCCccCCCCCCE
Confidence 0000000 000000000001112222111122346789999998
Q ss_pred EEEeecCCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEE
Q 002196 791 ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN 870 (954)
Q Consensus 791 l~~~~~dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd 870 (954)
+++...+-...++-... ....+... -..-..+..+|.+.-.....+|.|..||
T Consensus 407 ~yv~~~~~~~~~~~~~~------------------~~~~g~~~---------~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 407 FFMGINHICMDWEPFML------------------PYKAGQFF---------VGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp EEEEEECEEEEEEECCC------------------CCCTTSCC---------CCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred EEEeccccceeeecccc------------------cccCCcce---------ecccceeccCCcCCcccCCCcCeEEEEE
Confidence 88877764443321110 00001100 0000001112221100000257899999
Q ss_pred cccccEEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccc-eeEEEEecCCC-eEEEec
Q 002196 871 MMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLN-VLVSSG 946 (954)
Q Consensus 871 ~~~~~~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~-~l~s~s 946 (954)
+.+++.+.+.+.. .++..-.+.- .+.++++|+.||.++.||.++|+.+.+++..... ..-+.|..||+ |+++.+
T Consensus 460 ~~tG~~~W~~~~~-~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 460 AITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCCEEeEecCC-CCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 9999988776521 1222111222 3457777999999999999999999888644322 23356778887 454433
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.65 E-value=7.2e-06 Score=82.09 Aligned_cols=205 Identities=10% Similarity=-0.030 Sum_probs=135.5
Q ss_pred cceEEEecCCCC--eeEEEEcCCCCeEEEEEEc--CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 347 KTVVMTLNQGSA--VKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 347 ~~~~~~~~h~~~--V~~~~~sp~g~~ll~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
.+.+.++.|... ...++|+||+. +.++.+. ++.|.+.|+.+++.+....+ ..+ ....
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------------~~~-~fge 69 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKM-----------------DDS-YFGE 69 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEEC-----------------CTT-CCEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEec-----------------CCC-cceE
Confidence 366777887754 68999999975 5555443 57999999999998764221 111 1112
Q ss_pred EEEEccCCCEEEEEE-cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE
Q 002196 423 RVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 423 ~l~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
.+++ +++.|..+. .++.+.++|..+.+.+.. +..-... ...+++||++ ++++..++.|.++|..+.+.+.
T Consensus 70 Gi~~--~g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~ 140 (266)
T 2iwa_A 70 GLTL--LNEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIK 140 (266)
T ss_dssp EEEE--ETTEEEEEETTCSEEEEEETTTTEEEEE---EECCSSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEE
T ss_pred EEEE--eCCEEEEEEecCCEEEEEECCCCcEEEE---EECCCCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEE
Confidence 3444 355555554 578999999999877663 3211111 2346678886 3444568899999999998887
Q ss_pred EeccCC-----CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC-------------CCceEEEEECCCC
Q 002196 502 IFEGHE-----SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-------------GHSSTMMAYSADG 563 (954)
Q Consensus 502 ~~~~~~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g 563 (954)
.+.-.. ...+.+.+. ++...+....++.|.+.|..+++....+... ....+.++|+|++
T Consensus 141 ~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 141 KHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred EEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 775321 135667765 3345555556889999999998876665542 1356899999999
Q ss_pred CEEEEEEeCCCCceEEEEEeCC
Q 002196 564 ARLFSCGTNKEGESYLVEWNES 585 (954)
Q Consensus 564 ~~l~~~~~~~~~~~~i~iwd~~ 585 (954)
+.+++++.. ...+...++.
T Consensus 218 ~~lfVTgk~---~~~v~~i~l~ 236 (266)
T 2iwa_A 218 KRIFVTGKL---WPKLFEIKLH 236 (266)
T ss_dssp TEEEEEETT---CSEEEEEEEE
T ss_pred CEEEEECCC---CCeEEEEEEe
Confidence 988887743 2345555543
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.63 E-value=6.3e-06 Score=81.28 Aligned_cols=192 Identities=8% Similarity=-0.009 Sum_probs=130.0
Q ss_pred cceEEEecCCCC--eeEEEEcCCCCeEEEEEEcCC--eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeE
Q 002196 347 KTVVMTLNQGSA--VKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (954)
Q Consensus 347 ~~~~~~~~h~~~--V~~~~~sp~g~~ll~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (954)
-+++.++.|... ...+.|+ ++. |..+.+.+| .|+++|+.+++.+....+ .....
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l--------------------~~~~F 88 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIEL--------------------GKRYF 88 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEEC--------------------CTTCC
T ss_pred eEEEEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEec--------------------CCccc
Confidence 467778887755 4899999 664 767776665 899999999998865221 12333
Q ss_pred EEEEccCCCEEEEEE-cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEE
Q 002196 423 RVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (954)
Q Consensus 423 ~l~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 501 (954)
.....++++.|.... .++.+.+||.++.+.+.. +.... ....+++|++. |+.+..++.|.++|..+.+.+.
T Consensus 89 geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t---i~~~~---eG~glt~dg~~--L~~SdGs~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 89 GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS---FNYDG---EGWGLTHNDQY--LIMSDGTPVLRFLDPESLTPVR 160 (262)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE---EECSS---CCCCEEECSSC--EEECCSSSEEEEECTTTCSEEE
T ss_pred eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE---EECCC---CceEEecCCCE--EEEECCCCeEEEEcCCCCeEEE
Confidence 333344556665554 578999999999887763 33211 22334467775 4444457899999999999888
Q ss_pred EeccC--C---CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCC------------CCceEEEEECCCCC
Q 002196 502 IFEGH--E---SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------------GHSSTMMAYSADGA 564 (954)
Q Consensus 502 ~~~~~--~---~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~g~ 564 (954)
.+... . ..++.+.+. +|...+..-.+..|.+.|..+++....+... ..-.+.++|+|+++
T Consensus 161 ~I~V~~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 161 TITVTAHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEEeccCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 76542 1 234456664 3455555556889999999988876655442 23568999999999
Q ss_pred EEEEEEe
Q 002196 565 RLFSCGT 571 (954)
Q Consensus 565 ~l~~~~~ 571 (954)
.|++.+.
T Consensus 238 ~lfVTGK 244 (262)
T 3nol_A 238 RLFVTGK 244 (262)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9988874
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.63 E-value=7.5e-06 Score=81.99 Aligned_cols=197 Identities=9% Similarity=0.051 Sum_probs=133.3
Q ss_pred CeEEEEEccCCCEEEEEEc--CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 420 SVNRVMWSPDGTLFGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 420 ~V~~l~~spdg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
....++|+||+.++++.+. ++.|.++|+.+++.+.... +..+ .....+++. +++ +.++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~-~fgeGi~~~--g~~-lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS-YFGEGLTLL--NEK-LYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEE--TTE-EEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC-cceEEEEEe--CCE-EEEEEecCCEEEEEECCCC
Confidence 4679999999755555443 5799999999998776332 2222 122345554 555 5667778999999999999
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC-----CceEEEEECCCCCEEEEEEeC
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-----HSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~g~~l~~~~~~ 572 (954)
+.+.++......-..+ ++++ +.++.+..++.|.++|..+.+......... ...+.+.|. +| .+++....
T Consensus 97 ~v~~~i~~g~~~g~gl--t~Dg--~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~ 170 (266)
T 2iwa_A 97 SNIKNFTHQMKDGWGL--ATDG--KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ 170 (266)
T ss_dssp EEEEEEECCSSSCCEE--EECS--SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT
T ss_pred cEEEEEECCCCCeEEE--EECC--CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC
Confidence 9998886331222333 3443 456566678899999999877666554322 136678887 66 45554422
Q ss_pred CCCceEEEEEeCCCCeEEEEEecC------------CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCC
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGL------------GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNV 630 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 630 (954)
...|.+.|..+++.+..+... .......++++|+++.+++++ ..++|++.++...
T Consensus 171 ---~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 ---TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ---SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ---CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 335999999999999888642 112568899999987665555 7788888887543
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.62 E-value=2e-05 Score=89.99 Aligned_cols=233 Identities=13% Similarity=0.103 Sum_probs=140.8
Q ss_pred CCEEEEEEc-CCEEEEEEe-eCCcceeeeeeeecccC--------C-EEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 430 GTLFGVAYS-KHIVHLYTY-HGGDELRNHLEIEAHVG--------S-VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 430 g~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~h~~--------~-v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
+..+.+++. ++.|.-+|. .+|+.+-... +..... . -..++.. +. .++.++.|+.+..+|..+|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYG--AG--QIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEE--TT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEEE--CC--EEEEEeCCCEEEEEECCCCC
Confidence 445555666 788888888 7887654321 111000 0 0112332 34 47888889999999999999
Q ss_pred eEEEeccCCC----CeEE-EeeeccCCccEEEEEec------CCeEEEEeCCCCCceeEeeCCCCc--------------
Q 002196 499 KQYIFEGHES----PVYS-ICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGHS-------------- 553 (954)
Q Consensus 499 ~~~~~~~~~~----~v~~-~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~-------------- 553 (954)
.+..+..... .+.+ ..+ .. ..++.++. ++.|..+|..+++....+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AK--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ET--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEEecCCCCCccceeccCCEE--EC--CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 8877653210 1111 111 12 35666654 789999999998877665432211
Q ss_pred ------------------------eEEEEECCCCCEEEEEEeCCC--------Cc----eEEEEEeCCCCeEEEEEecCC
Q 002196 554 ------------------------STMMAYSADGARLFSCGTNKE--------GE----SYLVEWNESEGAVKRTYHGLG 597 (954)
Q Consensus 554 ------------------------v~~~~~s~~g~~l~~~~~~~~--------~~----~~i~iwd~~~~~~~~~~~~~~ 597 (954)
...+++.++...++.+..+.. ++ ..|..+|..+|+.+..++...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 023566777677776653210 11 258999999999988886432
Q ss_pred C--------CCeEEEEEeCCCC---EEEEEECCCeEEEEECCCCceeEEEecCCCC-----------CCc----------
Q 002196 598 K--------RSVGVVQFDTTKN---RFLAAGDEFMIKFWDMDNVNLLASIDADGGL-----------QAS---------- 645 (954)
Q Consensus 598 ~--------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~v---------- 645 (954)
. .....+....+|+ .++.++.+|.++++|..+|+.+......... .++
T Consensus 293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCC
Confidence 1 0111122234664 5677889999999999999998877543200 000
Q ss_pred ----------------ceEEECCCCCEEEEEeCCCcEEEEEc
Q 002196 646 ----------------PCIRFNKEGILLAVSTNDNGIKILAN 671 (954)
Q Consensus 646 ----------------~~v~~s~~~~~l~s~~~dg~i~iwd~ 671 (954)
..++++|+..++++...+....++..
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 414 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF 414 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccc
Confidence 24678888888888777655555543
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.61 E-value=0.00025 Score=80.98 Aligned_cols=205 Identities=13% Similarity=0.016 Sum_probs=123.4
Q ss_pred CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCC-------EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS-------VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 502 (954)
+..+++++.++.|.-+|..+|+.+-... ....... -..++.. +. .++.++.|+.|..+|..+|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~~--~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAIY--GD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEEE--TT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEEE--CC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 4455555564458888988888765332 1111000 0112222 33 377788899999999999999877
Q ss_pred eccCCC----CeE-EEeeecc-CCcc-EEEEEec------CCeEEEEeCCCCCceeEeeCCCC-----------------
Q 002196 503 FEGHES----PVY-SICPHHK-ENIQ-FIFSTAT------DGKIKAWLYDNLGSRVDYDAPGH----------------- 552 (954)
Q Consensus 503 ~~~~~~----~v~-~~~~~~~-~~~~-~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~----------------- 552 (954)
+..... .+. ...+... .+++ .+++++. ++.|..+|..+++..........
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 654321 111 1111111 1222 5666553 78999999998887665432110
Q ss_pred ------------------------ceEEEEECCCCCEEEEEEeCC----------CC----------ceEEEEEeCCCCe
Q 002196 553 ------------------------SSTMMAYSADGARLFSCGTNK----------EG----------ESYLVEWNESEGA 588 (954)
Q Consensus 553 ------------------------~v~~~~~s~~g~~l~~~~~~~----------~~----------~~~i~iwd~~~~~ 588 (954)
.-..++++|+...++++..+. .+ ...|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 002356677777887766421 11 1579999999999
Q ss_pred EEEEEecCCCC--------CeEEEEEe-CCCC---EEEEEECCCeEEEEECCCCceeEEEecC
Q 002196 589 VKRTYHGLGKR--------SVGVVQFD-TTKN---RFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 589 ~~~~~~~~~~~--------~i~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 639 (954)
.+..++..... ...-+... .+|+ .++.++.+|.++++|..+|+.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 99888642110 11111221 4664 6788889999999999999999888754
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.58 E-value=9.1e-06 Score=96.67 Aligned_cols=248 Identities=10% Similarity=0.001 Sum_probs=136.1
Q ss_pred CeeEEEEc-CCCCeEEEEEEcCC----eEEEEeCCCC-ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCC
Q 002196 358 AVKSMDFH-PVQQILLVVGTNMG----DVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 358 ~V~~~~~s-p~g~~ll~~g~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (954)
.+...+|| |||++++.+.+.+| +|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 57889999 99997666665554 4999999988 63211 0 0 11234689999999
Q ss_pred EEEEEEcC-----CEEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEc-CCCeEEEEECCCCc-eE--E
Q 002196 432 LFGVAYSK-----HIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGT-KQ--Y 501 (954)
Q Consensus 432 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~--~ 501 (954)
.|+....+ ..|.++++.++..... ..+. ........+.|+|||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887765 3577788876642211 1222 223456788999999964333322 24578889988762 22 3
Q ss_pred Ee-ccCCCCeEEEeeeccCCccEEEEEecC----CeEEEEeCCCCCceeE-eeCCCC--ceEEEEECCCCCEEEEEEeCC
Q 002196 502 IF-EGHESPVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSRVD-YDAPGH--SSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 502 ~~-~~~~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 573 (954)
.+ ........++.|+. + +.+++....+ ..|..+++.+...... +..+.. .+..+.+ .+..|+.....
T Consensus 313 ~l~~~~~~~~~s~~~~~-g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~- 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG-T-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRR- 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET-T-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEE-
T ss_pred EeecCCCCceEEEeeee-C-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEe-
Confidence 33 33344455554432 2 2344444443 2566677664222122 222232 3444444 45566554432
Q ss_pred CCceEEEEEeC-------CCCeEEEEEecCCCCCeEEEEE----eCCCC-EEEEEEC---CCeEEEEECCCCce
Q 002196 574 EGESYLVEWNE-------SEGAVKRTYHGLGKRSVGVVQF----DTTKN-RFLAAGD---EFMIKFWDMDNVNL 632 (954)
Q Consensus 574 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~i~~~~~----~~~~~-~l~~~~~---dg~i~iwd~~~~~~ 632 (954)
++...+.++|+ .++.....+.......+..+.+ ++++. ++++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34567888886 4443123332222112223322 34554 4444442 24688888877754
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.57 E-value=7.3e-06 Score=80.82 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=125.7
Q ss_pred EEEEEEecCCCceEEEEEcCCC--eEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS 543 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 543 (954)
...+.|+ ++. ++.+.+.+| .|+++|+.+++.+..+.... ......+.+.++ ...+..-.++.+.+||..+.+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~-~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKD-KIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETT-EEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCC-EEEEEEeeCCEEEEEECccCcE
Confidence 4788898 553 566777765 99999999999988876433 333322223333 4444455689999999999888
Q ss_pred eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC-C---CCeEEEEEeCCCCEEEEEECC
Q 002196 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-K---RSVGVVQFDTTKNRFLAAGDE 619 (954)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~---~~i~~~~~~~~~~~l~~~~~d 619 (954)
...+...... ..+++|++.|+.+. +...|.++|..+.+.+..+.... + ..++.+.+. +|..++..-.+
T Consensus 120 ~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 120 VRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 8777654422 23345777777653 24569999999999888876532 1 134456776 56544434378
Q ss_pred CeEEEEECCCCceeEEEecCCC----------CCCcceEEECCCCCEEEEEeC
Q 002196 620 FMIKFWDMDNVNLLASIDADGG----------LQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 620 g~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~s~~~ 662 (954)
+.|.+.|..+++.+..+...+- ....+.++|+|+++.|.+.+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 8999999999999999976311 124578999998877766654
No 261
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.55 E-value=0.0041 Score=76.51 Aligned_cols=446 Identities=9% Similarity=0.069 Sum_probs=217.9
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCC-----CceEEEEEcC-CCeEEEE
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN-----KQLSVVTCGE-DRVIKVW 492 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-----~~~~l~s~~~-dg~i~iw 492 (954)
..|.+.+.+. .+++.++ ++.+.+++++.++ +..... ..-...|.|+++.|.+ .. +++.|.. |++|+|+
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~-L~~~~~-~~l~~evscl~i~~~~~~~~~s~-~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQE-LRQISH-TEMEHEVACLDITPLGDSNGLSP-LCAIGLWTDISARIL 587 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTE-EEEEEE-EECSSCEEEEECCCCSSSTTCCS-EEEEEETTTTEEEEE
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCc-eeeecc-cCCCCceEEEEeecCCCCccccc-EEEEEECCCCEEEEE
Confidence 4566666543 4666664 6788888888654 222222 2235679999998643 12 6788886 9999999
Q ss_pred ECCCCceEEEecc-CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC--CCcee--EeeCCCCceEEEEECCCCCE-E
Q 002196 493 DAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN--LGSRV--DYDAPGHSSTMMAYSADGAR-L 566 (954)
Q Consensus 493 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~--~~~~~~~~v~~~~~s~~g~~-l 566 (954)
++.+.+.+....- ......++++.......+|..|-.||.+..+.++. +.... .......++.-..+...|.. +
T Consensus 588 sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V 667 (1158)
T 3ei3_A 588 KLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNV 667 (1158)
T ss_dssp ETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEE
T ss_pred ECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeE
Confidence 9988766644321 12344555554333346889999999987666543 22211 12222334444444444443 3
Q ss_pred EEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeE-EEEEeCC--CCEEEEEECCCeEEEEECCCCce--eEEEecCCC
Q 002196 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG-VVQFDTT--KNRFLAAGDEFMIKFWDMDNVNL--LASIDADGG 641 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 641 (954)
++++ +. . ..++..+ ++.... .-....+. ...|+.. ..-++..+ ++.++|..+.+... +++++..
T Consensus 668 ~a~s-~r---p-~liy~~~-~~l~~s--~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~-- 736 (1158)
T 3ei3_A 668 FACS-DR---P-TVIYSSN-HKLVFS--NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY-- 736 (1158)
T ss_dssp EEES-SS---C-EEEEESS-SSEEEE--EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS--
T ss_pred EEEC-CC---C-EEEEEcC-CceEEe--ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC--
Confidence 3333 22 2 3334333 333222 11111333 3345432 23455444 45688888765333 3334332
Q ss_pred CCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEe---ccccccceecchhccccCCccccccCCCCCccccccc
Q 002196 642 LQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV---ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718 (954)
Q Consensus 642 ~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (954)
..+..++++|+.+.++.+..+. ..++........... ...... .. .. .......+...
T Consensus 737 -~Tprri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~~~~--------- 797 (1158)
T 3ei3_A 737 -ESPRKICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSSS-VS---SS---KLFSSSTAPHE--------- 797 (1158)
T ss_dssp -SEEEEEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEEE-EC---CC---CCC-----------------
T ss_pred -CCceEEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhhc-cc---cc---ccccccccCch---------
Confidence 3678999999888777665432 122211100000000 000000 00 00 00000000000
Q ss_pred cccccccccccCCCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecC-CceEEEeec-
Q 002196 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALAS- 796 (954)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~- 796 (954)
..|.. . -.-..+++.|-.+. .....+.+....+...+..+.|..+ ..++++|+.
T Consensus 798 --------~~~g~---------~----~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~ 853 (1158)
T 3ei3_A 798 --------TSFGE---------E----VEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 853 (1158)
T ss_dssp ----------CCC---------E----EEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEE
T ss_pred --------hhcCC---------c----eeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeee
Confidence 00000 0 00134555543321 1122333333222222333334333 356776662
Q ss_pred ---------CCeEEEeeccCCCCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEE
Q 002196 797 ---------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKIS 867 (954)
Q Consensus 797 ---------dg~v~lw~~~~~~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~ 867 (954)
.|.+.+|++. .++.....-.. ..+.+++++-- +| +|++|-..+|+
T Consensus 854 ~~~~e~~~~~Gri~vf~v~----------------------~~kL~lv~~~~--v~g~v~al~~~-~g-~Lla~ig~~l~ 907 (1158)
T 3ei3_A 854 VYPEEAEPKQGRIVVFQYS----------------------DGKLQTVAEKE--VKGAVYSMVEF-NG-KLLASINSTVR 907 (1158)
T ss_dssp CCTTCSSCCCEEEEEEEEE----------------------TTEEEEEEEEE--ESSCEEEEEEE-TT-EEEEEETTEEE
T ss_pred cCCCCCCCCceEEEEEEEE----------------------CCEEEEEEEEE--cCCcCEEEeee-CC-EEEEEcCCEEE
Confidence 3566666543 11211110111 34677776633 34 66666789999
Q ss_pred EEEcccccEEE-eeCCCCCCeeEEEecCCCCceEEEEecCccEEEEecc--ccceEEEe-cCCccceeEEEEecCCCeEE
Q 002196 868 LFNMMTFKTMT-TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKTKL-KGHQKRITGLAFSNTLNVLV 943 (954)
Q Consensus 868 iwd~~~~~~~~-~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~--~~~~~~~~-~~h~~~V~~l~~s~dg~~l~ 943 (954)
+|++...+.++ ... +-..|..+.... .+.++++|+.-..|.++.++ .++....- ..+..+++++.|-.++ .++
T Consensus 908 vy~l~~~~~L~~~~~-~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l 984 (1158)
T 3ei3_A 908 LYEWTTEKELRTECN-HYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFL 984 (1158)
T ss_dssp EEEECTTSCEEEEEE-ECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEE
T ss_pred EEECCCCceEEEEee-ccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEE
Confidence 99997654333 111 112233333333 45688889887778776554 34433322 2356779999998665 566
Q ss_pred EecCCcceec
Q 002196 944 SSGADSQVRN 953 (954)
Q Consensus 944 s~s~Dg~I~i 953 (954)
.+..+|.|.|
T Consensus 985 ~aD~~gNl~v 994 (1158)
T 3ei3_A 985 GAENAFNLFV 994 (1158)
T ss_dssp EEETTSEEEE
T ss_pred EEcCCCcEEE
Confidence 6888888764
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.54 E-value=2.9e-05 Score=88.49 Aligned_cols=289 Identities=12% Similarity=0.059 Sum_probs=168.5
Q ss_pred EEEEEEc-CCeEEEEeC-CCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCE----EEEEEcCCEEEE
Q 002196 371 LLVVGTN-MGDVMLWEV-GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL----FGVAYSKHIVHL 444 (954)
Q Consensus 371 ll~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~----l~s~~~dg~i~i 444 (954)
.+++++. ++.|.-+|. .+|+.+ |................+ .....++++|.+.. |++++.|+.+.-
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~l-------W~~~~~~~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~A 135 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTIL-------WQDKPKQNPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAA 135 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEE-------EEECCCCCGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEE-------EEECCCCCcccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEE
Confidence 3455666 788999999 899875 333211111000000000 01122455554444 888889999999
Q ss_pred EEeeCCcceeeeeeeeccc--CCEEE-EEEecCCCceEEEEEc------CCCeEEEEECCCCceEEEeccCCCCe-----
Q 002196 445 YTYHGGDELRNHLEIEAHV--GSVND-LAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIFEGHESPV----- 510 (954)
Q Consensus 445 wd~~~~~~~~~~~~~~~h~--~~v~~-~~~s~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v----- 510 (954)
+|..+|+.+-... +..+. ..+.+ .... ++. ++.++ .++.|+.+|..+|+.+..+.......
T Consensus 136 lDa~TG~~~W~~~-~~~~~~~~~~~ssP~v~-~g~---V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~ 210 (599)
T 1w6s_A 136 LNAETGETVWKVE-NSDIKVGSTLTIAPYVV-KDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA 210 (599)
T ss_dssp EETTTCCEEEEEE-CCCGGGTCBCCSCCEEE-TTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred EECCCCCEEEeec-CCCCCccceeecCCEEE-CCE---EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence 9999998765332 22211 01211 1111 443 44444 38999999999999988775432110
Q ss_pred --------------------------------E-EEeeeccCCccEEEEEecC----------------CeEEEEeCCCC
Q 002196 511 --------------------------------Y-SICPHHKENIQFIFSTATD----------------GKIKAWLYDNL 541 (954)
Q Consensus 511 --------------------------------~-~~~~~~~~~~~~l~s~s~d----------------g~i~iwd~~~~ 541 (954)
. .+++.+.. ..++.++.+ +.|..+|.+++
T Consensus 211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~--g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG 288 (599)
T 1w6s_A 211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG 288 (599)
T ss_dssp TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred cccccccccccccccccccCCCcceecCCCccccceeEeCCC--CEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence 0 12222222 466666654 37999999998
Q ss_pred CceeEeeCCCCc---------eEEEEEC-CCCC---EEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC-----------
Q 002196 542 GSRVDYDAPGHS---------STMMAYS-ADGA---RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG----------- 597 (954)
Q Consensus 542 ~~~~~~~~~~~~---------v~~~~~s-~~g~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------- 597 (954)
+....+....+. ..-+... .+|+ .++.++. ++.++++|..+|+.+.......
T Consensus 289 ~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 364 (599)
T 1w6s_A 289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR----NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLK 364 (599)
T ss_dssp CEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT----TSEEEEEETTTCCEEEEEESSTTCCSEEEECTT
T ss_pred ceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC----CcEEEEEECCCCCEeecccccCCcccccccccC
Confidence 887776654321 1112222 4673 4444433 4569999999999887665321
Q ss_pred -CCC--------------------------eEEEEEeCCCCEEEEEE---------------------------------
Q 002196 598 -KRS--------------------------VGVVQFDTTKNRFLAAG--------------------------------- 617 (954)
Q Consensus 598 -~~~--------------------------i~~~~~~~~~~~l~~~~--------------------------------- 617 (954)
..+ -..++++|+...+++..
T Consensus 365 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~ 444 (599)
T 1w6s_A 365 TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKG 444 (599)
T ss_dssp TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS
T ss_pred CCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcC
Confidence 001 12356777766655431
Q ss_pred ------CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCCCeeEEEec
Q 002196 618 ------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (954)
Q Consensus 618 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 682 (954)
..|.|..||+.+++.+....... ....-.....+.+++.++.||.++.||..+++ .+..++
T Consensus 445 ~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~-~lW~~~ 511 (599)
T 1w6s_A 445 DRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGD-LLWKFK 511 (599)
T ss_dssp BTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEE
T ss_pred CcccCCCcCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCC-EEEEee
Confidence 34789999999999988876431 12211122246677779999999999999994 444443
No 263
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.54 E-value=0.0046 Score=76.06 Aligned_cols=292 Identities=10% Similarity=0.043 Sum_probs=163.8
Q ss_pred CCCCeeEEEEcCCC-----CeEEEEEEc-CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc-
Q 002196 355 QGSAVKSMDFHPVQ-----QILLVVGTN-MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS- 427 (954)
Q Consensus 355 h~~~V~~~~~sp~g-----~~ll~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s- 427 (954)
-.+.|.|+++.|.. ..++++|.. |++|+|+++.+.+.+.... +.+ .....++.+.
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~-----------------L~~-~~~p~si~l~~ 613 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM-----------------LGG-EIIPRSILMTT 613 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE-----------------CCS-SCCEEEEEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE-----------------CCC-CCCCcEEEEEE
Confidence 46789999998743 248888986 9999999998766554311 111 1123333332
Q ss_pred -cCCCEEEEEEcCCEEEEEEee--CCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 428 -PDGTLFGVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 428 -pdg~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
....+|..|-.||.+.-+.++ +|.........-| ..++.-..|...+.. .++.+|. ....++-- .++.... .
T Consensus 614 ~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~-~V~a~s~-rp~liy~~-~~~l~~s-~ 688 (1158)
T 3ei3_A 614 FESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTT-NVFACSD-RPTVIYSS-NHKLVFS-N 688 (1158)
T ss_dssp ETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCE-EEEEESS-SCEEEEES-SSSEEEE-E
T ss_pred eCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCce-eEEEECC-CCEEEEEc-CCceEEe-c
Confidence 234578899999988766664 3433222112223 345655556555554 3444443 33334432 3333222 1
Q ss_pred cCCCCeEEEe-eeccCCccEEEEEecCCeEEEEeCCCCCceeEe-eCCCCceEEEEECCCCCEEEEEEeCC-----C---
Q 002196 505 GHESPVYSIC-PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNK-----E--- 574 (954)
Q Consensus 505 ~~~~~v~~~~-~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~-----~--- 574 (954)
-....+..++ |+...-..-++..+ ++.+++..++........ ..-+..+..++++|+.+.++++..+. +
T Consensus 689 l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 689 VNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp BSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred cChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 1223344443 32211012344333 456888887654432221 12245788899998877665544211 0
Q ss_pred -------------------------------------CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEe---CC-CCEE
Q 002196 575 -------------------------------------GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD---TT-KNRF 613 (954)
Q Consensus 575 -------------------------------------~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~---~~-~~~l 613 (954)
....+++.|..+.+.+..+.-.....+.+++.. .+ ..++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 124588899888888887776666566666532 22 4688
Q ss_pred EEEE----------CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 614 LAAG----------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 614 ~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++|+ ..|.|++|++..++ +..+....-.+.+++++-- +|++++.. ...+++|++...
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTT
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCC
Confidence 8876 35789999987543 3332222224467776633 45544433 478999999765
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.53 E-value=5.4e-06 Score=97.22 Aligned_cols=280 Identities=8% Similarity=0.000 Sum_probs=155.7
Q ss_pred eEEEEcC-CCCeEEEEEEcCC-----------eEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 360 KSMDFHP-VQQILLVVGTNMG-----------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 360 ~~~~~sp-~g~~ll~~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
.++++.| +|+ +++.|+.++ .+.+||..+++...... ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3667777 676 777776532 57888888876432111 012233344567888
Q ss_pred cCCCEEEEEEc-CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEc-CC-----CeEEEEECCCCceE
Q 002196 428 PDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-ED-----RVIKVWDAVTGTKQ 500 (954)
Q Consensus 428 pdg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~ 500 (954)
++|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 4589999998764322 1122211 1123455667888 677777 44 57999999887654
Q ss_pred EEe----ccCCCCeEEEeeeccCCccEEEEEecCC---------eEEEEeCCCCCceeEeeCC---------CCceEEEE
Q 002196 501 YIF----EGHESPVYSICPHHKENIQFIFSTATDG---------KIKAWLYDNLGSRVDYDAP---------GHSSTMMA 558 (954)
Q Consensus 501 ~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~---------~~~v~~~~ 558 (954)
..- ......-....+. .++..++.++.+| .+..||..+.......... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCccccccccccccceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 321 0000000001111 1224445554443 4677887765432221111 11223444
Q ss_pred ECC-CCCEEEEEEeCCCC----c---eEEEEEeCCCCeEEEEE--ecCCCCCeEEEEEeCCCCEEEEEECC---------
Q 002196 559 YSA-DGARLFSCGTNKEG----E---SYLVEWNESEGAVKRTY--HGLGKRSVGVVQFDTTKNRFLAAGDE--------- 619 (954)
Q Consensus 559 ~s~-~g~~l~~~~~~~~~----~---~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 619 (954)
|.. +++.+++++.+... . ..+.+||..+....... .......-.+++..|+++.++.||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 443 66666766643210 1 15788998877655443 22222123445677899999998854
Q ss_pred --CeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeC
Q 002196 620 --FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (954)
Q Consensus 620 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~ 662 (954)
..+.+||..+.+....-..........++.+.|+|++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999887654332211111122234566789999999885
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.50 E-value=0.0006 Score=72.54 Aligned_cols=247 Identities=12% Similarity=0.005 Sum_probs=152.1
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~ 437 (954)
..+|.+..++. .++++ ....|+..++........ .. ....+..++|++.+..|..+.
T Consensus 35 ~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~~D 91 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWSD 91 (349)
T ss_dssp SSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEEEE
T ss_pred CCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEEEe
Confidence 45577766743 34443 345688888766543221 11 234578999998766666554
Q ss_pred -cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeee
Q 002196 438 -SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (954)
Q Consensus 438 -~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 516 (954)
..+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 92 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavd 167 (349)
T 3v64_C 92 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 167 (349)
T ss_dssp TTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEE
T ss_pred ccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEe
Confidence 56788888887654222 12222344678999987665 46677778899999976554433344344567888888
Q ss_pred ccCCccEEEEEecC-CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec
Q 002196 517 HKENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG 595 (954)
Q Consensus 517 ~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 595 (954)
|... .++++-... +.|..++++...............+.++++|++..|+.+-. +...|..+|+........+..
T Consensus 168 p~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~~ 243 (349)
T 3v64_C 168 PMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 243 (349)
T ss_dssp TTTT-EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECS
T ss_pred cCcC-eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEeC
Confidence 7542 445555445 78888887754433333333446789999998888887753 245688999765433222332
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 002196 596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 596 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
... ....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 244 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 244 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 55677773 34444444467788888866666666554
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=5.2e-05 Score=80.16 Aligned_cols=256 Identities=8% Similarity=0.025 Sum_probs=146.0
Q ss_pred CeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCcc--ccc----cccCCCCCCeEEEEEccCCC
Q 002196 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMP--LQA----SLSSDYTASVNRVMWSPDGT 431 (954)
Q Consensus 358 ~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~h~~~V~~l~~spdg~ 431 (954)
...+++|+++|+ ++.++..++.|..|+..+++... |........ ... .........+..+++.+++.
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 455788999987 66778888999999987764321 110000000 000 00001123578999998334
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeee-eec-ccCCEEEEEEec-CCCceEEEEEcC-----------------CCeEEE
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLE-IEA-HVGSVNDLAFSY-PNKQLSVVTCGE-----------------DRVIKV 491 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~-h~~~v~~~~~s~-~~~~~~l~s~~~-----------------dg~i~i 491 (954)
.|..+...+.|..+|..++.. ..... ..+ .......+++.+ +|. ++++... ++.|..
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEE
Confidence 455555556688888765432 21111 111 123478899999 887 4554432 378999
Q ss_pred EECCCCceEEEeccCCCCeEEEeeeccCCccEEEEE-ecCCeEEEEeCCCCC--ceeEeeCCCCceEEEEECCCCCEEEE
Q 002196 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST-ATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGARLFS 568 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~ 568 (954)
||..+++....... ......+++++++ ..++.+ +..+.|..|++.... ....+..... ...++++++|++.++
T Consensus 170 ~d~~~~~~~~~~~~-~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 170 YDPSTKETTLLLKE-LHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EETTTTEEEEEEEE-ESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EeCCCCEEEEeccC-CccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 99877764332221 2234567877654 555444 566899999987532 1111111222 788999999986666
Q ss_pred EEeCC------CCceEEEEEeCCCCeEEEEEecCCC---CCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 569 CGTNK------EGESYLVEWNESEGAVKRTYHGLGK---RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 569 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
..... .....|..+|. .++.+..+..... ..+..+++ .++..+++....+.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 54310 01245888887 4777777765431 24566666 3555555545677888888753
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=9.9e-05 Score=77.25 Aligned_cols=239 Identities=9% Similarity=0.066 Sum_probs=141.0
Q ss_pred CCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEE
Q 002196 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (954)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (954)
.+.+.+..+........++|+|+|+ ++++-..++.|..||..+.. .. .|. ....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCceeE
Confidence 3456666776557788999999998 77776678999999987542 21 111 12468899
Q ss_pred EEccCCCEEEEEEcC-C-EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce-EE
Q 002196 425 MWSPDGTLFGVAYSK-H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QY 501 (954)
Q Consensus 425 ~~spdg~~l~s~~~d-g-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~ 501 (954)
+++++|+++++.... + .|..++..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 999999976655443 2 4666676666532 211221 122334555555443 456666788999999876532 21
Q ss_pred Eec---------cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc---eeEeeCCCCceEEEEECCCCCEEEEE
Q 002196 502 IFE---------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 502 ~~~---------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
... ..-...+.+ ++++. .++++-...+.|..|+++.... ...+. .......++++++|++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg~-~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred EECCccccccccCCCCcCCCc--CcCCC-EEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence 111 111223444 44432 3445556678899999874211 11111 11345678999999765543
Q ss_pred EeCCCCceEEEEEeCCCCeEEE--EEecCCCCCeEEEEEe---CCCCEEEEEECC
Q 002196 570 GTNKEGESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFD---TTKNRFLAAGDE 619 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~---~~~~~l~~~~~d 619 (954)
.. ...|.++|.. ++... .+... .....+++|. |+++.|+.++..
T Consensus 230 ~~----~~~V~~~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HI----YNSVVRIAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BT----TCCEEEECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC----CCeEEEECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence 32 2348899975 65533 22222 1267889998 787777776643
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=2.6e-05 Score=82.52 Aligned_cols=240 Identities=11% Similarity=0.068 Sum_probs=146.0
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee-----------------ecccCCEEEEEEec-CCCceEE
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI-----------------EAHVGSVNDLAFSY-PNKQLSV 480 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~h~~~v~~~~~s~-~~~~~~l 480 (954)
....+++|+++|+++.++..++.|..|+..++.. ...... ......+..+++.+ ++. |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 3456788999999888888899999998876542 211000 01123578999997 554 4
Q ss_pred EEEcCCCeEEEEECCCCceEEEecc-----CCCCeEEEeeec-cCCccEEEEEec-----------------CCeEEEEe
Q 002196 481 VTCGEDRVIKVWDAVTGTKQYIFEG-----HESPVYSICPHH-KENIQFIFSTAT-----------------DGKIKAWL 537 (954)
Q Consensus 481 ~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~l~s~s~-----------------dg~i~iwd 537 (954)
+.+...+.|..+|..++.. ..+.. .......+++.+ ++ .+.++... ++.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444445688899765542 22211 113456777765 44 45554322 36788888
Q ss_pred CCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe--EEEEEecCCCCCeEEEEEeCCCCEEEE
Q 002196 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTKNRFLA 615 (954)
Q Consensus 538 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~ 615 (954)
..+........ .......++++|+|+.|+++... ...|..|++.... ....+.... . ...+++.++|+++++
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~---~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFL---SHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGHFWVS 245 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGG---GTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSCEEEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeCC---CCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCCEEEE
Confidence 76544322211 12345679999999987776432 3458899887421 111221111 2 677899999987777
Q ss_pred EEC----------CCeEEEEECCCCceeEEEecCCC--CCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 616 AGD----------EFMIKFWDMDNVNLLASIDADGG--LQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 616 ~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
... .+.|..+|. .++.+..+..... ...+.++++ .++++.++....+.|..+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 654 467888887 4777777765422 234666766 3566666655678888888754
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=2.2e-05 Score=77.33 Aligned_cols=182 Identities=7% Similarity=0.097 Sum_probs=126.0
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
.-...+.|+ ++.++.+.+.+|.|+++|+++++.++.. +.. ........+++++ +.+..-.++.+.+||..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 445688887 4666777778889999999999887643 332 3333333445666 45667788999999999999
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCC-----ceEEEEECCCCCEEEEEEeCC
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-----SSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~ 573 (954)
.+.++.... .-..++ +++ +.|+.+..++.|.++|..+.+....+..... .++.+.|. +|+ |++....
T Consensus 128 ~~~ti~~~~-eGwGLt--~Dg--~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~- 199 (268)
T 3nok_A 128 RERTTRYSG-EGWGLC--YWN--GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWH- 199 (268)
T ss_dssp EEEEEECSS-CCCCEE--EET--TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT-
T ss_pred EEEEEeCCC-ceeEEe--cCC--CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECC-
Confidence 999987532 223444 333 5677666789999999998877665544221 45667776 664 5554432
Q ss_pred CCceEEEEEeCCCCeEEEEEecC------------CCCCeEEEEEeCCCCEEEEEE
Q 002196 574 EGESYLVEWNESEGAVKRTYHGL------------GKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~ 617 (954)
...|.+.|.++++.+..+... .....+.++++|+++.|+..+
T Consensus 200 --s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 --SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp --CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred --CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 335999999999998887642 123568899999877666665
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.46 E-value=0.00049 Score=74.42 Aligned_cols=247 Identities=12% Similarity=0.007 Sum_probs=152.9
Q ss_pred eeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE-
Q 002196 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY- 437 (954)
Q Consensus 359 V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~- 437 (954)
-.|.+..+.+ .++++ ....|+..++.++..... . .....+..++|++.+..|..+.
T Consensus 79 ~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D~ 135 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSDV 135 (386)
T ss_dssp SCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEET
T ss_pred CeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEeC
Confidence 3466666633 24433 346788888876543321 1 1234588999998766665554
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeec
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 517 (954)
..+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.|
T Consensus 136 ~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp 211 (386)
T 3v65_B 136 TLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP 211 (386)
T ss_dssp TTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc
Confidence 56788889887654222 12222234577899887665 466777778999999765544444444445678888887
Q ss_pred cCCccEEEEEecC-CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC
Q 002196 518 KENIQFIFSTATD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 518 ~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
... .++++-... +.|..++++...............+.++++|++..|+.+-. ....|..+|+........+...
T Consensus 212 ~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (386)
T 3v65_B 212 MEG-TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQG 287 (386)
T ss_dssp TTT-EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSS
T ss_pred CCC-eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECC
Confidence 542 444444444 67888888755444433333446789999998888887753 2456889997644333333322
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
.. ....+++. .+..+++-...+.|..++..+++....+..
T Consensus 288 ~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 288 LP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp CS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 56677773 344455555778888888777777666653
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=5e-05 Score=79.55 Aligned_cols=228 Identities=17% Similarity=0.121 Sum_probs=137.3
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEc-CCC-eEEEEECCC
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDR-VIKVWDAVT 496 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~-~dg-~i~iwd~~~ 496 (954)
.....++|+++|+++++-..++.|..||.++.. .. .......+..+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~----~~~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI----HATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE----EEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE----EEeCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977766678899989876532 21 112234688999999998 344443 333 577788788
Q ss_pred CceEEEecc-CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE-e-------e--CCCCceEEEEECCCCCE
Q 002196 497 GTKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-Y-------D--APGHSSTMMAYSADGAR 565 (954)
Q Consensus 497 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~g~~ 565 (954)
++....... .......++..+ ++..+++...++.|..+|......... . . ......+.+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 775433221 122234444332 223444444688888888764321111 0 0 011234555 888988
Q ss_pred EEEEEeCCCCceEEEEEeCCC-CeE--EEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCC
Q 002196 566 LFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 642 (954)
|+++.. ....|..+|+.. +.. ...+... . ....++++++|+++++....+.|.++|.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 887653 244689999864 321 1112111 1 34568899999887777778899999975 5553322222223
Q ss_pred CCcceEEEC---CCCCEEEEEeCC
Q 002196 643 QASPCIRFN---KEGILLAVSTND 663 (954)
Q Consensus 643 ~~v~~v~~s---~~~~~l~s~~~d 663 (954)
...++++|. |+++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 457899998 887777766554
No 272
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.45 E-value=3e-05 Score=76.41 Aligned_cols=179 Identities=10% Similarity=0.045 Sum_probs=124.5
Q ss_pred EEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeE--EEeeeccCCccEEEEEecCCeEEEEeCCCCCc
Q 002196 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY--SICPHHKENIQFIFSTATDGKIKAWLYDNLGS 543 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 543 (954)
...+.|+ ++. ++++.+.+|.|+++|+.+++.+..+ - ..... .+++ .++ ...+..-.++.+.+||..+.+.
T Consensus 57 tqGL~~~--~~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 57 TQGLVFH--QGH-FFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEEEEE--TTE-EEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTEE
T ss_pred cceEEEE--CCE-EEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCcE
Confidence 4678887 344 6888889999999999999988877 2 22333 3444 333 4555566789999999999888
Q ss_pred eeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC----CCeEEEEEeCCCCEEEEEE-C
Q 002196 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK----RSVGVVQFDTTKNRFLAAG-D 618 (954)
Q Consensus 544 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-~ 618 (954)
...+...... ..++ +|++.|+.+. +...|.++|..+.+.+..+..... ..++.+.|. +|. +.+.. .
T Consensus 129 ~~ti~~~~eG-wGLt--~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~ 199 (268)
T 3nok_A 129 ERTTRYSGEG-WGLC--YWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWH 199 (268)
T ss_dssp EEEEECSSCC-CCEE--EETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT
T ss_pred EEEEeCCCce-eEEe--cCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECC
Confidence 8777654332 2333 5788888763 245699999999998887765321 134556776 664 44444 6
Q ss_pred CCeEEEEECCCCceeEEEecCC-----------CCCCcceEEECCCCCEEEEEe
Q 002196 619 EFMIKFWDMDNVNLLASIDADG-----------GLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 619 dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~s~~ 661 (954)
+..|.+.|..+++.+..+...+ .....+.++|+|+++.|.+.+
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 8899999999999999987531 123568999999765555444
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=8.1e-05 Score=72.76 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=124.6
Q ss_pred CCEEEEEEecCCCceEEEEEcCC--CeEEEEECCCCceEEEeccCCCC-eEEEeeeccCCccEEEEEecCCeEEEEeCCC
Q 002196 464 GSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEGHESP-VYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 464 ~~v~~~~~s~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 540 (954)
.....+.|++ + . ++.+.+.+ +.|+.+|+.+++.+..+...... -..+++. ++ ......-.++.+.+||..+
T Consensus 21 ~ftqGL~~~~-~-~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~-~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 21 AFTEGLFYLR-G-H-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RD-RLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCEEEEEEET-T-E-EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSSEEEEEETTT
T ss_pred cccccEEEEC-C-E-EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CC-EEEEEEeeCCEEEEEECCc
Confidence 3466889985 3 3 56677765 49999999999998887643322 1233433 32 4555556789999999999
Q ss_pred CCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC----CCeEEEEEeCCCCEEEEE
Q 002196 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK----RSVGVVQFDTTKNRFLAA 616 (954)
Q Consensus 541 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~ 616 (954)
.+....+...... ..++ ++++.|+.+. +...|.++|..+.+.+..+..... ..++.+.+. +|..++..
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 8888777654432 3343 5777777653 245699999999988887765321 134556655 55544434
Q ss_pred ECCCeEEEEECCCCceeEEEecCC-----------CCCCcceEEECCCCCEEEEEe
Q 002196 617 GDEFMIKFWDMDNVNLLASIDADG-----------GLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 617 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~s~~ 661 (954)
-.+..|.+.|..+++.+..+...+ .....+.++++|+++.|.+.+
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 367899999999999999987431 112457899999877666555
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.43 E-value=0.00081 Score=70.46 Aligned_cols=232 Identities=8% Similarity=0.020 Sum_probs=144.9
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC----CceEEEeccCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GTKQYIFEGHE 507 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~ 507 (954)
+|+.+. ...|+..|+.+.+... +......+..++|.+++.. ++++....+.|..+++.. ......+...-
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEEC-CCeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 344443 3458888888765432 2223456789999987765 566777789999999876 22222333223
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
.....+++.+... .+.++-...+.|.+++++.................++++|.+..|+.+.... ...|...++. |
T Consensus 77 ~~p~glavd~~~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~--~~~I~~~~~d-G 152 (316)
T 1ijq_A 77 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLN-G 152 (316)
T ss_dssp SCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS--SCEEEEEETT-S
T ss_pred CCcCEEEEeecCC-eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC--CCeEEEEcCC-C
Confidence 4457788765432 4556666788999999875444433443445788999999877777665321 2468888875 3
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
.....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 333333222223678899999887777766 6679999998754333333322122334677775 35566666667889
Q ss_pred EEEEccCC
Q 002196 667 KILANADG 674 (954)
Q Consensus 667 ~iwd~~~~ 674 (954)
..++..++
T Consensus 232 ~~~~~~~g 239 (316)
T 1ijq_A 232 FSANRLTG 239 (316)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 99988777
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00068 Score=72.10 Aligned_cols=242 Identities=10% Similarity=0.009 Sum_probs=152.1
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
...+|.+..++ .+|+.+ ....|+..++.+..... +......+..++|.+.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~----~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSC-CEEEEE-CBSCEEEECTTSCCEEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccC-ceeEee-cccceEEEeCCCCeeEE----eecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 34456665663 344444 34457777776543221 2223345889999987775 46677778899999987765
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
....+.........+++.+... .+.++-...+.|.+.+++.................++++|.+..|+...... ...
T Consensus 107 ~~~~~~~~~~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecCCC-eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 4444443334456788775442 5566666678899999876554444433445778999999877777765322 256
Q ss_pred EEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
|..+++.... ...+....-.....++++|++..|+.+. ..+.|..+|+........+... ......+++ ..+.+.
T Consensus 184 I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly 259 (349)
T 3v64_C 184 IEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 259 (349)
T ss_dssp EEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEE
Confidence 8888876433 2233222222578899998777777665 6678999998754433333322 234567777 345555
Q ss_pred EEEeCCCcEEEEEccCC
Q 002196 658 AVSTNDNGIKILANADG 674 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~ 674 (954)
++-...+.|..++..++
T Consensus 260 ~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 260 WTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EecCCCCeEEEEEccCC
Confidence 66566788888886666
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.38 E-value=0.00053 Score=74.10 Aligned_cols=240 Identities=9% Similarity=-0.009 Sum_probs=151.7
Q ss_pred eEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceE
Q 002196 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (954)
Q Consensus 421 V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 500 (954)
-.|.+..+ ..+|+.+ ....|+.+++.+..... +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSS-CCEEEEE-CBSCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCccc-cceeEee-cCccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 34555555 3344444 34568888877654322 2223445889999987765 4667777889999998776544
Q ss_pred EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEE
Q 002196 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (954)
Q Consensus 501 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 580 (954)
..+.........+++.+... .+.++-...+.|.+.+++.................++++|.+..|+...... ...|.
T Consensus 152 ~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~--~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS--SCEEE
T ss_pred EEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC--CCEEE
Confidence 44443333456677775442 5556666678898888876544444443445788999999888877764322 25688
Q ss_pred EEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEE
Q 002196 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (954)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 659 (954)
.+++............ -.....++++|++..|+.+. ..+.|..+|+........+... ......+++ ..+.++++
T Consensus 229 r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 229 ASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp EEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred EEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEe
Confidence 8887644332222222 22578899998777777665 6678999998754443333322 234567777 34556666
Q ss_pred EeCCCcEEEEEccCC
Q 002196 660 STNDNGIKILANADG 674 (954)
Q Consensus 660 ~~~dg~i~iwd~~~~ 674 (954)
-...+.|..++..++
T Consensus 305 d~~~~~V~~~~~~~G 319 (386)
T 3v65_B 305 DWHTKSINSANKFTG 319 (386)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred eCCCCeEEEEECCCC
Confidence 666788888886666
No 277
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.37 E-value=8.4e-05 Score=72.68 Aligned_cols=185 Identities=14% Similarity=0.137 Sum_probs=124.8
Q ss_pred CCCeEEEEEccCCCEEEEEEcC--CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 418 TASVNRVMWSPDGTLFGVAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
..-...+.|++ +.++.+.+.+ ..|+++|+++++.++.. .+.. ........+++++ +.+..-.++.+.+||..
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEETT
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEECC
Confidence 45567899986 5566666665 48999999999877633 2222 2233333334565 45567789999999999
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC-----CceEEEEECCCCCEEEEEE
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-----HSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~g~~l~~~~ 570 (954)
+.+.+.++..... =..++ +++ ..|+.+..++.|.++|..+.+....+.... ..++.+.+. +|+ +++..
T Consensus 94 tl~~~~ti~~~~~-Gwglt--~dg--~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanv 166 (243)
T 3mbr_X 94 TLTPRARFRYPGE-GWALT--SDD--SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANV 166 (243)
T ss_dssp TTEEEEEEECSSC-CCEEE--ECS--SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEeCCCC-ceEEe--eCC--CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEE
Confidence 9999999875332 24454 233 456666668899999999887766554422 245666665 555 44444
Q ss_pred eCCCCceEEEEEeCCCCeEEEEEecC------------CCCCeEEEEEeCCCCEEEEEEC
Q 002196 571 TNKEGESYLVEWNESEGAVKRTYHGL------------GKRSVGVVQFDTTKNRFLAAGD 618 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~ 618 (954)
.. ...|.+.|+++|+.+..+... .....+.++++|+++.|+..+.
T Consensus 167 w~---s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WL---TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT---TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC---CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 32 235999999999998887632 2235688999998887777764
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.0014 Score=71.18 Aligned_cols=232 Identities=8% Similarity=0.011 Sum_probs=148.7
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC----ceEEEeccCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~ 507 (954)
+|+.+ ....|+..++++..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 44678888887654332 2334567889999987775 4666677889999998652 2333333344
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
.....+++.+... .+.++-...+.|.+.+++.................++++|.+..|+...... ...|...++...
T Consensus 159 ~~p~glavD~~~~-~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~--~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTTT-EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS--SCCEEEEETTSC
T ss_pred CCcccEEEEecCC-ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC--CCEEEEEeCCCC
Confidence 5677888876432 5666666788999999886555444444455688999999877777664321 235888887644
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 3333223222 2678899999888887775 5678999998765444444332222334567763 34455666667889
Q ss_pred EEEEccCC
Q 002196 667 KILANADG 674 (954)
Q Consensus 667 ~iwd~~~~ 674 (954)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 99987777
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.31 E-value=0.003 Score=66.04 Aligned_cols=232 Identities=9% Similarity=-0.042 Sum_probs=140.1
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE-cCCEEEEEEeeCC---cce
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGG---DEL 453 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~iwd~~~~---~~~ 453 (954)
...|+..|+.+.+.... . .....+..++|+++++.|..+. .++.|..+++.+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 35688889887654321 1 1235678999999776666554 4588999998761 211
Q ss_pred eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEecC-Ce
Q 002196 454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD-GK 532 (954)
Q Consensus 454 ~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-g~ 532 (954)
.. .+...-.....+++.+.+.. ++++-...+.|.+.|.........+.........+++.|... .++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g-~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC-EEEEEccCCCCe
Confidence 11 12222245678999876665 466767788999999765443333333345678888876542 344443333 67
Q ss_pred EEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCCC
Q 002196 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKN 611 (954)
Q Consensus 533 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 611 (954)
|...+++.................+++++++..|+.+-. ....|..+|+............ .......+++. .+.
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCE
Confidence 888887654333333333457889999999888887753 2446899998643222222221 11245667775 344
Q ss_pred EEEEEECCCeEEEEECCCCceeEEEe
Q 002196 612 RFLAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44444567788888877776665553
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.28 E-value=5.8e-05 Score=88.43 Aligned_cols=233 Identities=8% Similarity=-0.051 Sum_probs=129.7
Q ss_pred EEEEcc-CCCEEEEEEcCC-----------EEEEEEeeCCcceeeeeeee-cccCCEEEEEEecCCCceEEEEEc-CCCe
Q 002196 423 RVMWSP-DGTLFGVAYSKH-----------IVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-EDRV 488 (954)
Q Consensus 423 ~l~~sp-dg~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~~l~s~~-~dg~ 488 (954)
++++.+ +++.++.|+.+. .+.+||..+++-.. ...+. .+.....++++..+++ +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-RTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-CEEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-CcccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 567777 899999987643 58899998876332 11222 2333445678888888 677777 4568
Q ss_pred EEEEECCCCceEEEeccCCCCe-EEEeeeccCCccEEEEEe-cC-----CeEEEEeCCCCCceeEe-----eCCCCceEE
Q 002196 489 IKVWDAVTGTKQYIFEGHESPV-YSICPHHKENIQFIFSTA-TD-----GKIKAWLYDNLGSRVDY-----DAPGHSSTM 556 (954)
Q Consensus 489 i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~v~~ 556 (954)
+.+||..+++....-..+.... .++++.+ ++++++.|+ .+ ..+.+||..+..-...- ...... ..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~ 343 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQ 343 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TT
T ss_pred eEEecCcCCceeECCCCCccccccceEEec--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cc
Confidence 9999988876543222122211 2233332 347888887 34 46889998764422210 000000 00
Q ss_pred EEECCCCCEEEEEEeCCC-----CceEEEEEeCCCCeEEEEEecCC--------CCCeEEEEEeC-CCCEEEEEECCC--
Q 002196 557 MAYSADGARLFSCGTNKE-----GESYLVEWNESEGAVKRTYHGLG--------KRSVGVVQFDT-TKNRFLAAGDEF-- 620 (954)
Q Consensus 557 ~~~s~~g~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~~~-~~~~l~~~~~dg-- 620 (954)
..+..+++.++.++.++. ....+..||..+........... ...-.++.+.. +++.++.|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 122345555555544321 12357889988776443332211 00123344443 567777777432
Q ss_pred ---------eEEEEECCCCceeEEE--ecCCCCCC-cceEEECCCCCEEEEEeCC
Q 002196 621 ---------MIKFWDMDNVNLLASI--DADGGLQA-SPCIRFNKEGILLAVSTND 663 (954)
Q Consensus 621 ---------~i~iwd~~~~~~~~~~--~~~~~~~~-v~~v~~s~~~~~l~s~~~d 663 (954)
.|.+||..+....... ..+ ... -.+++..|++++++.|+.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp--~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLY--FARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCS--SCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCC--CCcccCCeEECCCCCEEEECCcc
Confidence 6888888776654433 222 222 2355677899999988754
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.27 E-value=0.0052 Score=64.58 Aligned_cols=282 Identities=9% Similarity=-0.021 Sum_probs=147.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEE
Q 002196 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (954)
Q Consensus 354 ~h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (954)
.....+.++.|.+++. ++++| ..|.| +...+.|+.-.. ... ........+.++.|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~--------~~~-------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEP--------RTL-------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEE--------CCC-------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeE--------CCC-------CCCCCCccEEEEEecC-CeEE
Confidence 3445799999988877 55554 56655 334444432111 000 0112345788999986 4444
Q ss_pred EEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc-eEEEeccCCCCeEE
Q 002196 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESPVYS 512 (954)
Q Consensus 434 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 512 (954)
+ ++..+.|.. ..+.|+..........+.+.+..+.+.+++. +++.+ .++.|..- .+.|+ -......+...+..
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEE
Confidence 4 456664433 3344544432211112345678888887765 45554 45554322 12333 22233345567888
Q ss_pred EeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEE
Q 002196 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (954)
Q Consensus 513 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 592 (954)
+.+.+++ .+++.+...+..+-+|-....-..........+..+.+.++++.++++. + +.+++.+...++.-..
T Consensus 168 ~~~~~~~--~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-~----G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 168 LNRSPSG--EYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-G----GKIAFSDPDNSENWGE 240 (327)
T ss_dssp EEECTTS--CEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-T----TEEEEEETTEEEEECC
T ss_pred EEEcCCC--cEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-C----ceEEEecCCCCCeeEe
Confidence 8877643 5665554433333343211111111122345788899999987665542 2 2355553222332222
Q ss_pred EecC---CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecC-CCCCCcceEEECCCCCEEEEEeCCCcEEE
Q 002196 593 YHGL---GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKI 668 (954)
Q Consensus 593 ~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~s~~~dg~i~i 668 (954)
+... ....+..+.+.+++..++++ .+|.| ++....|+.-..+... .....+.++.|.+++. +++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEE
Confidence 2211 12257888888877665554 46766 4455556655555422 1124678898875554 556677887766
Q ss_pred EE
Q 002196 669 LA 670 (954)
Q Consensus 669 wd 670 (954)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 282
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.25 E-value=0.02 Score=68.23 Aligned_cols=449 Identities=15% Similarity=0.134 Sum_probs=230.9
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
...|.++...++|... .|+.+ -+..++..+++.... ... .. .......|.++...+++..|..
T Consensus 145 ~~~i~~i~~d~~g~lW--igt~~-Gl~~~~~~~~~~~~~------~~~-----~~---~~~~~~~i~~i~~d~~~~~lWi 207 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIY--VGTYN-GLCRYIPSNGKFEGI------PLP-----VH---SSQSNLFVNSLLEDTTRQCVWI 207 (758)
T ss_dssp CSCEEEEEECTTCCEE--EEETT-EEEEEETTTTEEEEE------CCC-----CC---TTCSSCCEEEEEEETTTTEEEE
T ss_pred CCeEEEEEEcCCCCEE--EEeCC-CHhhCccCCCceEEe------cCC-----Cc---cccccceeEEEEEECCCCEEEE
Confidence 3568899998888833 34444 477888776643211 000 00 0011245888988887776555
Q ss_pred EEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec-------cCCC
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-------GHES 508 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~ 508 (954)
|+. +-+..++..+++.. ....+ ....|.++....+|. |..|+. +-+.+++..+++...... -...
T Consensus 208 gt~-~Gl~~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~---lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (758)
T 3ott_A 208 GTE-GYLFQYFPSTGQIK-QTEAF--HNNSIKSLALDGNGD---LLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNN 279 (758)
T ss_dssp EEE-EEEEEEETTTTEEE-EEEEE--EEEEEEEEEECTTCC---EEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCS
T ss_pred EEC-CCCeEEcCCCCeEE-eccCC--CCCeEEEEEEcCCCC---EEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcC
Confidence 654 34777887765422 11122 234588888877776 444554 458888877665432211 1124
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEe-----eCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 583 (954)
.|.++.....+ .|..|+..| +.++.....-..... ......|.++.-..+|...+. +.++ +..++
T Consensus 280 ~i~~i~~D~~g---~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-----l~~~~ 349 (758)
T 3ott_A 280 IIWNIFADQEH---NIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-----LIRFT 349 (758)
T ss_dssp CEEEEEECTTC---CEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-----EEEES
T ss_pred eEEEEEEcCCC---CEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-----ceeec
Confidence 57777654333 366666666 444432211111110 112346888888888876554 3221 66777
Q ss_pred CCCCe--EEEEEec------CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC----CCCCcceEEEC
Q 002196 584 ESEGA--VKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----GLQASPCIRFN 651 (954)
Q Consensus 584 ~~~~~--~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s 651 (954)
..++. ....+.. .....|.++.-..+|...+ |+ ++-|..||..+++......... ....|.++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 427 (758)
T 3ott_A 350 DPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFED 427 (758)
T ss_dssp CTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEEC
T ss_pred ccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEc
Confidence 66532 1222221 1122577777777776544 45 4568999988765443221111 12346777777
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCee-EEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccC
Q 002196 652 KEGILLAVSTNDNGIKILANADGIRL-LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMS 730 (954)
Q Consensus 652 ~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (954)
++|.+. .|+..+-+..+|..+.... ...+...
T Consensus 428 ~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~---------------------------------------------- 460 (758)
T 3ott_A 428 TAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAE---------------------------------------------- 460 (758)
T ss_dssp TTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECS----------------------------------------------
T ss_pred CCCCEE-EEECCCceEEEccccccccCCcceecc----------------------------------------------
Confidence 776544 4666666777775421000 0000000
Q ss_pred CCCCCCCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEE-eecCCeEEEeeccCCC
Q 002196 731 NDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILA-LASNAVHKLWKWPRNE 809 (954)
Q Consensus 731 ~~~~~~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~dg~v~lw~~~~~~ 809 (954)
..+... .......|.++...++|...+. ++.+| +..++..+
T Consensus 461 ---------------------~~~~~~--------------~~l~~~~i~~i~~d~~g~lWi~~~t~~G-l~~~d~~~-- 502 (758)
T 3ott_A 461 ---------------------QNYSVH--------------NGLSGMFINQIIPDNEGNVWVLLYNNKG-IDKINPRT-- 502 (758)
T ss_dssp ---------------------EEECGG--------------GTCSCSCEEEEEECTTSCEEEEETTCSS-EEEEETTT--
T ss_pred ---------------------cccccc--------------cccccceeeeEEEcCCCCEEEEccCCCC-cEEEeCCC--
Confidence 000000 0001234777888888885553 44444 44454322
Q ss_pred CCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeC--C-CCCC
Q 002196 810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM--P-PPPA 886 (954)
Q Consensus 810 ~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~--~-h~~~ 886 (954)
++..............+.++....+|.+.+.. .+-+..||..+++.. .+. + ....
T Consensus 503 --------------------~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~-~~~~~gl~~~~ 560 (758)
T 3ott_A 503 --------------------REVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQ-SISFGSFSNNE 560 (758)
T ss_dssp --------------------TEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCC-BCCCCC---CC
T ss_pred --------------------CceEEecCCCcCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceE-EecccCCCccc
Confidence 11111000000012456788888888877654 345888887654432 121 1 2345
Q ss_pred eeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEe-cCCCeEEEecCCcceecC
Q 002196 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 887 v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~s~Dg~I~i~ 954 (954)
|.++.. . +|++.+ ++..| +..+|..+.+... +.-....+....+. +|| .|.-|+.+|-+++|
T Consensus 561 i~~i~~-~-~g~lWi-~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G-~l~fG~~~Gl~~f~ 623 (758)
T 3ott_A 561 ILSMTC-V-KNSIWV-STTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKED-CVYLGGADGFGISH 623 (758)
T ss_dssp EEEEEE-E-TTEEEE-EESSC-EEEEETTTCCEEE-C--CCCCCSEEEEETTTT-EEEEECBSEEEEEE
T ss_pred eEEEEE-C-CCCEEE-ECCCC-eEEEcCCCceeEE-ecCCCCceeeeEEECCCC-cEEEecCCceEEEC
Confidence 788776 3 565554 44555 7888888765432 22122334444444 455 56667788877653
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.001 Score=66.16 Aligned_cols=191 Identities=7% Similarity=0.047 Sum_probs=125.2
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
.+.+..++|+|++..|.++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999988788888889999999998 76655321 122 256788899999987776
Q ss_pred EEcCCEEEEEEeeCCccee--eeeee----ecccCCEEEEEEecCCCceEEEEEcCCC-eEEEEEC-CCCceEEEec---
Q 002196 436 AYSKHIVHLYTYHGGDELR--NHLEI----EAHVGSVNDLAFSYPNKQLSVVTCGEDR-VIKVWDA-VTGTKQYIFE--- 504 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~--~~~~~----~~h~~~v~~~~~s~~~~~~~l~s~~~dg-~i~iwd~-~~~~~~~~~~--- 504 (954)
.-.++.+.++++.....+. ....+ .........++|.|+++++ +++.-.+. .|+.|+- .....+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L-~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF-WFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE-EEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE-EEEECcCCceEEEEcccccCCceeeecchh
Confidence 5567889999887654322 11111 1234567899999999864 33333333 5556651 1111222221
Q ss_pred ----cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCC---------CceEEEEECCCCCEEEE
Q 002196 505 ----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARLFS 568 (954)
Q Consensus 505 ----~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~~l~~ 568 (954)
.+...+.+++++|.. +++++.....+.+..+|.... ....+.... .....++|.++|+..++
T Consensus 166 ~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp HHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred hccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 133457888999865 477788888888999997643 444333332 26789999999985554
No 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.22 E-value=0.023 Score=67.64 Aligned_cols=447 Identities=11% Similarity=0.072 Sum_probs=233.1
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
...|.++.-..+|. |-.|+.+| +..||..+.+.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35689988888875 44556555 78999877532210 0112245777754 344 4556
Q ss_pred EEcCCEEEEEEeeCCcceeeeeee-e-cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe-ccC----CC
Q 002196 436 AYSKHIVHLYTYHGGDELRNHLEI-E-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGH----ES 508 (954)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~~-~-~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~----~~ 508 (954)
++.+ -+..++..+++... .... . -....|.++....+|. +..|+.+ -+..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC---EEEEeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 57788876654221 1000 0 1134688888777776 3344444 5778887776543211 111 22
Q ss_pred CeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe
Q 002196 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (954)
Q Consensus 509 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 588 (954)
.|.++..... +..|..|+. +-+..+|..+.............|.++....+|...+. +.++ +.+++..++.
T Consensus 192 ~i~~i~~d~~--~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-----l~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDTT--RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG-----LYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEETT--TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE-----EEEECCTTSC
T ss_pred eeEEEEEECC--CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc-----eeEEecCCCc
Confidence 3677765433 244555554 45777887654322211122335788888888876554 3222 7888887765
Q ss_pred EEEEEec------CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec-----CCCCCCcceEEECCCCCEE
Q 002196 589 VKRTYHG------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----DGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 589 ~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l 657 (954)
....... .....|.++....+|... .|+..| +.++.... ....+.. ......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 112357888777776544 455556 54443322 2222211 1112357777777777665
Q ss_pred EEEeCCCcEEEEEccCCCe-eEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCC
Q 002196 658 AVSTNDNGIKILANADGIR-LLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (954)
+ |+.+| +..++..++.. ....+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~~~~~~~------------------------------------------------------ 362 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERHDAIWYR------------------------------------------------------ 362 (758)
T ss_dssp E-EETTE-EEEESCTTSSCCCCEEEC------------------------------------------------------
T ss_pred E-eeCCc-ceeecccccccceeEEec------------------------------------------------------
Confidence 5 34444 44454433210 000000
Q ss_pred CCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcc
Q 002196 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 816 (954)
Q Consensus 737 ~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~ 816 (954)
... .. .......|.++....+|..-+ ++. +-+..|+..+..+.
T Consensus 363 -------------------~~~---~~--------~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~----- 405 (758)
T 3ott_A 363 -------------------MGD---KT--------YPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI----- 405 (758)
T ss_dssp -------------------TTC---SS--------SCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE-----
T ss_pred -------------------cCC---cC--------CCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE-----
Confidence 000 00 000124577777777776444 443 45666654321110
Q ss_pred cCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEcccc-----cEE---EeeC---C-CC
Q 002196 817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF-----KTM---TTFM---P-PP 884 (954)
Q Consensus 817 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~-----~~~---~~~~---~-h~ 884 (954)
.+... ...+......|.++...++|.+.+....+-+.++|..+. ... ..+. + ..
T Consensus 406 -------~~~~~-------~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 406 -------HYNIV-------DNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp -------EEEEE-------CCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred -------EeecC-------CCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 00000 000000234678888888887666444667888886531 111 1111 1 22
Q ss_pred CCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecC---CccceeEEEEecCCCeEEEecCCcceecC
Q 002196 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQVRNN 954 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~s~Dg~I~i~ 954 (954)
..|.++...+ +|++.+.++..+-+..+|..+++....... ....+.++....+|.+.+.+ ..|-.++|
T Consensus 472 ~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~ 542 (758)
T 3ott_A 472 MFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRIN 542 (758)
T ss_dssp SCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred ceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCceEEEe
Confidence 3589999988 787776333345588899887764432211 13467888888888766544 46766543
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=0.00026 Score=84.07 Aligned_cols=244 Identities=7% Similarity=-0.038 Sum_probs=132.8
Q ss_pred CCCC-CeEEEEEc-cCCCEEEEEEc-CC----EEEEEEeeCC-cceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-
Q 002196 416 DYTA-SVNRVMWS-PDGTLFGVAYS-KH----IVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED- 486 (954)
Q Consensus 416 ~h~~-~V~~l~~s-pdg~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d- 486 (954)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+.. .+.. ....++|+|||+.+ +++ ..|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~l-~y~-~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTSL-FYV-TKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTEE-EEE-EECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCEE-EEE-EECC
Confidence 4443 68889999 99999987654 22 5999999998 63321 1221 24578999999863 333 333
Q ss_pred ----CeEEEEECCCCce--EEEecc-CCCCeEEEeeeccCCccEEEEEec---CCeEEEEeCCCCCc-e--eEe-eCCCC
Q 002196 487 ----RVIKVWDAVTGTK--QYIFEG-HESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDNLGS-R--VDY-DAPGH 552 (954)
Q Consensus 487 ----g~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~-~--~~~-~~~~~ 552 (954)
..|+++++.++.. ...+.. .......+.|++++ ++|+..+. ...|.++|+.+... . ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688899887642 233332 23345566777655 66665553 34588888877531 2 222 22233
Q ss_pred ceEEEEECCCCCEEEEEEeCC-CCceEEEEEeCCCC-eEEE-EEecCCCCCeEEEEEeCCCCEE-EEEECCCe--EEEEE
Q 002196 553 SSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEG-AVKR-TYHGLGKRSVGVVQFDTTKNRF-LAAGDEFM--IKFWD 626 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~--i~iwd 626 (954)
...++.|+ +|..|+..+... .+...|..+|+.++ .... .+.......+..+.+ .++.| ++...++. |++++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEe
Confidence 44555544 366666555432 34567888888753 2222 222222213444444 44454 44556664 55666
Q ss_pred C-------CCCceeEEEecCCCCCCcceEEE------CCCCC-EEEEEeCC---CcEEEEEccCC
Q 002196 627 M-------DNVNLLASIDADGGLQASPCIRF------NKEGI-LLAVSTND---NGIKILANADG 674 (954)
Q Consensus 627 ~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~-~l~s~~~d---g~i~iwd~~~~ 674 (954)
+ .+++....+.... ....+.+ ++++. ++++.+.. ..+..+|+.++
T Consensus 398 l~~~~~~~~~g~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 398 ADSQDGVFKAGTGLREVVMEE---PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp CCTTTSCCCTTTCCEECCCCC---SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred cccccccccCCccceEECCCC---ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 5 3443144443221 1223344 34554 44443332 45667777665
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.0083 Score=64.97 Aligned_cols=234 Identities=9% Similarity=-0.045 Sum_probs=142.8
Q ss_pred CCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEE-cCCEEEEEEeeCCccee-e
Q 002196 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELR-N 455 (954)
Q Consensus 378 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~-~ 455 (954)
...|+..++........ ......+..++|++.+..|..+. ..+.|+.+++....... .
T Consensus 91 ~~~I~~i~l~~~~~~~~--------------------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~ 150 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSL--------------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 150 (400)
T ss_dssp TTEEEEECTTSCSCEEE--------------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC
T ss_pred cceeEEEccCCcceeEe--------------------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc
Confidence 46788888876643321 12346788999999776666654 46788888887532100 0
Q ss_pred eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CCeEE
Q 002196 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIK 534 (954)
Q Consensus 456 ~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i~ 534 (954)
...+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.|... .++++-.. .+.|.
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g-~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT-EEEEEECSSSCCEE
T ss_pred eEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC-eEEEEeCCCCCEEE
Confidence 1122223456788999986665 566777788999999876654444444445578888887542 33444322 46788
Q ss_pred EEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCCCEE
Q 002196 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRF 613 (954)
Q Consensus 535 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l 613 (954)
..+++...........-.....+++++++..|+.+-. +...|..+|+............ .-.....+++. .+..+
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~ly 304 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF 304 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEE
T ss_pred EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEE
Confidence 8888765444444333457889999999888888743 2456889998654333323321 11134566663 23344
Q ss_pred EEEECCCeEEEEECCCCceeEEEe
Q 002196 614 LAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
++-...+.|..+|..+|+.+..+.
T Consensus 305 wtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCSEEEEESSSCCCCEEEE
T ss_pred EecCCCCeEEEEEcCCCCceEEEe
Confidence 444466778888877776666654
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.09 E-value=0.0053 Score=64.04 Aligned_cols=227 Identities=10% Similarity=0.031 Sum_probs=141.7
Q ss_pred cCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCce-EEEeccCCCCeEEEeee
Q 002196 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPH 516 (954)
Q Consensus 438 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~ 516 (954)
....|+.+++++...... .+......+..++|.+.+.. ++.+-...+.|..+++..+.. ...+...-.....+++.
T Consensus 11 ~~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 11 NRRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp CEEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred ccCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 346788889876531111 11112235778999987665 566777788999999876632 12222223345677776
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecC
Q 002196 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (954)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 596 (954)
+.. +.+.++-...+.|.+++++.................+++.|.+..|+.+... ....|...++.... ...+...
T Consensus 88 ~~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~~~~~~~ 163 (318)
T 3sov_A 88 WLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-RFIIINS 163 (318)
T ss_dssp TTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-CEEEECS
T ss_pred cCC-CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-eEEEEEC
Confidence 543 2566666677899999987654444443444577899999987777766432 13458888875332 2222222
Q ss_pred CCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccCC
Q 002196 597 GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 597 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~~ 674 (954)
.-.....+++++++..|+.+. ..+.|..+|+........... .......+++.. +.++.+-...+.|..++..++
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 222568899999877777765 678999999875433333321 123456777753 345556566788999998777
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.06 E-value=0.0035 Score=62.21 Aligned_cols=202 Identities=11% Similarity=0.086 Sum_probs=128.5
Q ss_pred cCCCCCCeEEEEEccCCCEEE-EEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE
Q 002196 414 SSDYTASVNRVMWSPDGTLFG-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (954)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw 492 (954)
+.+-...+..++|+|+++.|+ +...++.|...|.. ++.++.. .+.+ ....-.+++.+++. ++++.-.++.+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g-~~D~EGIa~~~~g~--~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDF-VKDLETIEYIGDNQ--FVISDERDYAIYVI 96 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSS-CSSEEEEEECSTTE--EEEEETTTTEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCC-CCChHHeEEeCCCE--EEEEECCCCcEEEE
Confidence 455567899999999876555 46677888888887 6655532 2332 24577888888886 56777678899999
Q ss_pred ECCCCce---EEEec------cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCC---CCceeEee-------CCCCc
Q 002196 493 DAVTGTK---QYIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN---LGSRVDYD-------APGHS 553 (954)
Q Consensus 493 d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~-------~~~~~ 553 (954)
++..... +.... ........+++.+.. +.|+++.......+|.++. ........ .....
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 8765442 22221 123446889998876 4566565554444554431 11111111 12235
Q ss_pred eEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC--------CCeEEEEEeCCCCEEEEEECCCeEEEE
Q 002196 554 STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (954)
Q Consensus 554 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~dg~i~iw 625 (954)
+..++++|....+++.+.. ...+.++|.. |+.+..+.-..+ .....|+|.++|+. +..++.+.++++
T Consensus 175 ~S~l~~dp~tg~lliLS~~---s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f 249 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSHE---SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRF 249 (255)
T ss_dssp CCEEEEETTTTEEEEEETT---TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEE
T ss_pred ceeEEEcCCCCeEEEEECC---CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEE
Confidence 7899999988888777643 4568889965 556665544321 25678999999974 445777777776
Q ss_pred EC
Q 002196 626 DM 627 (954)
Q Consensus 626 d~ 627 (954)
..
T Consensus 250 ~~ 251 (255)
T 3qqz_A 250 TP 251 (255)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.05 E-value=0.011 Score=61.60 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=130.7
Q ss_pred CCeEEEEEccCCCEEEEE-EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC
Q 002196 419 ASVNRVMWSPDGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~ 497 (954)
..+..++|.+.+..|..+ ...+.|..+++.++..... .+...-.....+++.+.+.. ++++-...+.|.++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCC
Confidence 356789999966555544 4567888888876532111 12222345678999876665 4667777889999997654
Q ss_pred ceEEEeccCCCCeEEEeeeccCCccEEEEEe--cCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCC
Q 002196 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTA--TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
.....+.........+++.+.. ..++.+. ..+.|...+++...........-...+.+++++++..|+.+-. .
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~ 186 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K 186 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---T
T ss_pred cEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---C
Confidence 4333333444567888888754 3444444 3577888887754433333333346789999998888887753 2
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEe
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 637 (954)
...|..+|+.............. ....+++.. +..+++-...+.|..++..+++....+.
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 45688999864332222222222 556677753 3444444467888888887777666664
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.04 E-value=0.01 Score=59.77 Aligned_cols=100 Identities=5% Similarity=0.034 Sum_probs=68.2
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (954)
...+.+.|+..+..+....-. ..+.-++|..+.++.-. ...+.++|+++.+.+...... ..|.--.|-.+ +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis~-~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISL-N 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECSS-S
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecCC-C
Confidence 346888999886544332221 22455789888777766 679999999999999988764 24656666544 3
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEecccc
Q 002196 656 LLAVSTNDNGIKILANADGIRLLRTVESRT 685 (954)
Q Consensus 656 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 685 (954)
.|+..+ +..|+-|++.....+.+.+..|.
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 555554 35899999976656666666543
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.03 E-value=0.0086 Score=70.42 Aligned_cols=232 Identities=7% Similarity=0.016 Sum_probs=145.2
Q ss_pred EEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCC----ceEEEeccCC
Q 002196 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (954)
Q Consensus 432 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~ 507 (954)
+|+.+ ....|+..++...... .+......+..++|.+.+.+ ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 34433 4455777777655432 23334556889999987665 5667777889999998753 2233344344
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 587 (954)
.....|++.+.+. .+.++-...+.|.+.+++.................|+++|.+.+|+...... ...|...++...
T Consensus 471 ~~P~GLAvD~~~~-~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~--~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS--SCEEEEEETTSC
T ss_pred CCcceeeeeecCC-cEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC--CCeEEEEecCCC
Confidence 5567788876543 5666667788999999886554444444455788999999877777764321 246888887644
Q ss_pred eEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcE
Q 002196 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (954)
Q Consensus 588 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i 666 (954)
.. ..+....-.....|++++.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|
T Consensus 548 ~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp CE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred ce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 43 333322223678899998877777775 56789999987655544444322222334666633 3344444456778
Q ss_pred EEEEccCC
Q 002196 667 KILANADG 674 (954)
Q Consensus 667 ~iwd~~~~ 674 (954)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887776
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.02 E-value=0.0053 Score=64.52 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=70.9
Q ss_pred CCCCccEEEeccCCCeEEEecCCeEEEEEcccccEEEeeCC----CCCCeeEEEecCCCCceEEEEecCccEEEEecccc
Q 002196 842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMP----PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (954)
Q Consensus 842 ~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~ 917 (954)
....+..++++++++.++.+.+|.+++.+.+.++.-..+.. +...+.++++.+ ++.+++++. +|.| .+..+.|
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp SSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESSTT
T ss_pred CCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCCC
Confidence 34567889999999888777788888775333444433332 223588999998 787777654 6766 4555656
Q ss_pred ceEEEec---CCccceeEEEEecCCCeEEEecCCccee
Q 002196 918 EVKTKLK---GHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 918 ~~~~~~~---~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
+.-..+. .+...+.++.|.++++ ++.++.+|+|.
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~ 316 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILL 316 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEE
T ss_pred cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEE
Confidence 5444443 2345688999986655 66677787664
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0021 Score=70.37 Aligned_cols=242 Identities=7% Similarity=0.112 Sum_probs=136.9
Q ss_pred CCeEEEEEcc-CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC----eEEEEE
Q 002196 419 ASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR----VIKVWD 493 (954)
Q Consensus 419 ~~V~~l~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg----~i~iwd 493 (954)
.....++++| ++..|.++...+.|+.+|++++... .+.........++|+++++. ++++...++ .+...+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEe
Confidence 3567899998 4666776666688888998776532 23334456889999999985 244443222 344444
Q ss_pred CCCCceE--EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeC-CCCceEEEEECCCCCEEEEEE
Q 002196 494 AVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCG 570 (954)
Q Consensus 494 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~ 570 (954)
..+... ..+.. ......+++++. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333222 22221 223456677663 335666666778999999876543222222 223578899999999777765
Q ss_pred eCCCCceEEEEEeCC--CCeE--EEEEecCC------C--------CCeE-EEEEe--------CCCCEEEEEECCCeEE
Q 002196 571 TNKEGESYLVEWNES--EGAV--KRTYHGLG------K--------RSVG-VVQFD--------TTKNRFLAAGDEFMIK 623 (954)
Q Consensus 571 ~~~~~~~~i~iwd~~--~~~~--~~~~~~~~------~--------~~i~-~~~~~--------~~~~~l~~~~~dg~i~ 623 (954)
.. ...|..++.. ++.. +..+.+.. . .... .++.. +++..+++-...+.|+
T Consensus 289 ~~---~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 VN---QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp TT---TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred CC---CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 32 3457776654 2322 22222210 0 0122 45443 3344555545677888
Q ss_pred EEECCCCceeEEEec---------CC------CCCCcceEEECC-CCCEEEEEeCCCcEEEEEcc
Q 002196 624 FWDMDNVNLLASIDA---------DG------GLQASPCIRFNK-EGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 624 iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~s~-~~~~l~s~~~dg~i~iwd~~ 672 (954)
.++ .+|........ .+ .......++++| ++.++++-...+.|+.++++
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 888 34544333321 00 012356888888 45555555556777777653
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.0046 Score=67.68 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=96.5
Q ss_pred CeeEEEEcC-CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 358 AVKSMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 358 ~V~~~~~sp-~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
....++|+| ++..|.++- ..+.|+.+|..++..... .........++|+++|++|+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d-~~~~I~~id~~~~~v~~~--------------------~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVG-EQHPTRLIDFEKEYVSTV--------------------YSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEE-BTEEEEEEETTTTEEEEE--------------------ECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEe-CCCcEEEEECCCCEEEEE--------------------ecCCCCcceEEEeCCCCEEEEE
Confidence 567899998 455454443 338899999887654321 1134568899999999977666
Q ss_pred EcC----C-EEEEEEeeCCcceeeeeeeecccCCEEEEEEec-CCCceEEEEEcCCCeEEEEECCCCceEEEecc-CCCC
Q 002196 437 YSK----H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG-HESP 509 (954)
Q Consensus 437 ~~d----g-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~ 509 (954)
... . .+.+.+. .+.... ...+. .......++++| ++. ++++-..++.|..+|..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 542 2 2333343 332221 11222 223467788999 555 567777788999999887654222221 2234
Q ss_pred eEEEeeeccCCcc-EEEEEecCCeEEEEeCCC
Q 002196 510 VYSICPHHKENIQ-FIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 510 v~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~ 540 (954)
...+++++++ + ++++-...+.|..++.+.
T Consensus 272 P~gia~~pdG--~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 272 EFHIQFHPSG--NYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CEEEEECTTS--SEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEcCCC--CEEEEEECCCCEEEEEeCCc
Confidence 6778888766 5 455555678899988764
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.92 E-value=0.016 Score=68.17 Aligned_cols=212 Identities=10% Similarity=-0.019 Sum_probs=130.1
Q ss_pred CCCeEEEEEccCCCEEEEE-EcCCEEEEEEeeCCcce-eeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC
Q 002196 418 TASVNRVMWSPDGTLFGVA-YSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (954)
Q Consensus 418 ~~~V~~l~~spdg~~l~s~-~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~ 495 (954)
...+..|+|++.+..|..+ ...+.|+.+++...... .....+.........|++.+.+++ ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4567899999966655554 44578888888753210 011123323456778999988876 56777788999999987
Q ss_pred CCceEEEeccCCCCeEEEeeeccCCccEEEEEe-cC-CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCC
Q 002196 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TD-GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 573 (954)
.......+.........|++.+.. .+|+... .. +.|...+++.................|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~--g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCeEEEEEeCCCCCcceEEEecCC--CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 554444444444567889988754 2444443 33 67888888765444444444457889999988888888743
Q ss_pred CCceEEEEEeCCCCeEEEEEecCC-CCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEe
Q 002196 574 EGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASID 637 (954)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 637 (954)
+...|..+++........+.... -.....+++. +..|+.+. ..+.|...|..+|+.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 24468888886544333333211 1133455553 33555444 66778888877776665553
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.91 E-value=0.0029 Score=69.34 Aligned_cols=241 Identities=10% Similarity=0.135 Sum_probs=136.6
Q ss_pred CCeEEEEEccC--CCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC---C-eEEEE
Q 002196 419 ASVNRVMWSPD--GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED---R-VIKVW 492 (954)
Q Consensus 419 ~~V~~l~~spd--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d---g-~i~iw 492 (954)
.....++|+|+ +..|..+...+.|+.++..++.... +.........++|+++|+ ++++.... . .+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678999995 4555555444889999987765432 333445689999999999 45554421 2 23333
Q ss_pred ECCCCce-EEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc-eeEeeC-CCCceEEEEECCCCCEEEEE
Q 002196 493 DAVTGTK-QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDA-PGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 493 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~g~~l~~~ 569 (954)
+...+.. ...+. .......+++++. ++.+.++-..++.|+.+|..++.. ...... .......++|+|+|+.|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 3222211 01111 1233455666663 234555555678899998875544 222222 12234579999999977776
Q ss_pred EeCCCCceEEEEEeCC--CCeE--EEEEecC---C-----------CCCeEEEEE---------eCCCCEEEEEECCCeE
Q 002196 570 GTNKEGESYLVEWNES--EGAV--KRTYHGL---G-----------KRSVGVVQF---------DTTKNRFLAAGDEFMI 622 (954)
Q Consensus 570 ~~~~~~~~~i~iwd~~--~~~~--~~~~~~~---~-----------~~~i~~~~~---------~~~~~~l~~~~~dg~i 622 (954)
.. ....|+.++.. ++.. ...+.+. . -.....+++ .+++.++++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 53 24468887754 3321 1222221 0 013556888 6666666666677899
Q ss_pred EEEECCCCceeEEEecCCC----------------CCCcceEEEC-CCCCEEEEEeCCCcEEEEEcc
Q 002196 623 KFWDMDNVNLLASIDADGG----------------LQASPCIRFN-KEGILLAVSTNDNGIKILANA 672 (954)
Q Consensus 623 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-~~~~~l~s~~~dg~i~iwd~~ 672 (954)
+.++. +|.. ..+.+... ......++++ ++|.++++=...++|+.++++
T Consensus 368 ~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 5543 33332111 1224568888 566655555556677776653
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.0047 Score=67.64 Aligned_cols=237 Identities=15% Similarity=0.084 Sum_probs=133.4
Q ss_pred CeeEEEEcCC--CCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEE
Q 002196 358 AVKSMDFHPV--QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (954)
Q Consensus 358 ~V~~~~~sp~--g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 435 (954)
....++|+|+ +..|.++ ...+.|+.+|..++..... .........++|+++|+ |..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~--------------------~~~~~~P~giavd~dG~-lyV 197 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIK--------------------TTNIGQCADVNFTLNGD-MVV 197 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEE--------------------CCCCSCEEEEEECTTCC-EEE
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEe--------------------ecCCCCccEEEECCCCC-EEE
Confidence 4679999995 3335444 3338899999987765431 22345688999999999 444
Q ss_pred EEcC----CE-EEEEEeeCCcceeeeeeeecccCCEEEEEEec-CCCceEEEEEcCCCeEEEEECCCCceEEEe-cc-CC
Q 002196 436 AYSK----HI-VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EG-HE 507 (954)
Q Consensus 436 ~~~d----g~-i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~-~~ 507 (954)
+... .. +...+...+. ... ..+. .-.....+++.| ++. ++++-..++.|+.+|..++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~-~~~-~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGF-TER-LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTT-CCE-EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCe-ecc-cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 4432 12 3333332221 100 1111 234456789999 555 5666667889999998877763332 21 12
Q ss_pred CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCc----eeEeeCC---------------CCceEEEEE---------
Q 002196 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS----RVDYDAP---------------GHSSTMMAY--------- 559 (954)
Q Consensus 508 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~---------------~~~v~~~~~--------- 559 (954)
..-..++++++++ .+.++-...+.|+.++++.... ...+... -.....+++
T Consensus 273 ~~~~~ia~dpdG~-~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 273 GSNFHIVWHPTGD-WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp SSCEEEEECTTSS-EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CCcccEEEeCCCC-EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 2234688887663 2455555678899988663211 1111111 123567888
Q ss_pred CCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCC-----------------CCeEEEEEe-CCCCEEEEEECCCe
Q 002196 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK-----------------RSVGVVQFD-TTKNRFLAAGDEFM 621 (954)
Q Consensus 560 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----------------~~i~~~~~~-~~~~~l~~~~~dg~ 621 (954)
.++|.+.++-. +...|+.++. +|... ++.+... .....++++ +++..+++=..++.
T Consensus 352 d~~g~lyvaD~----~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r 425 (433)
T 4hw6_A 352 EDEYDFYFCDR----DSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHR 425 (433)
T ss_dssp SCCEEEEEEET----TTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred CCCCcEEEEEC----CCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCE
Confidence 66665544432 2446888885 56443 3332110 135678888 45544444445667
Q ss_pred EEEEECC
Q 002196 622 IKFWDMD 628 (954)
Q Consensus 622 i~iwd~~ 628 (954)
|+.++++
T Consensus 426 Ir~i~~e 432 (433)
T 4hw6_A 426 VRKIAPE 432 (433)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 7776653
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.88 E-value=0.037 Score=58.08 Aligned_cols=250 Identities=9% Similarity=0.092 Sum_probs=146.8
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (954)
...+.+.|+..+..+....-. ..+.-++|..+.++.-. ...+.|+|+++...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 346888999886544332221 23456889888777765 6799999999999999887652 46566665443
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCC
Q 002196 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 735 (954)
Q Consensus 656 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (954)
.|+..+ +..|+-|++.....+.+.+..|..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 555554 4589999997655666666654321
Q ss_pred CCCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeec-------CCeEEEeeccCC
Q 002196 736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-------NAVHKLWKWPRN 808 (954)
Q Consensus 736 ~~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------dg~v~lw~~~~~ 808 (954)
....|.....+++.++++..+- .|.+.+|+.+..
T Consensus 149 ---------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 149 ---------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp ---------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred ---------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 1123444455566666554332 367777765432
Q ss_pred CCCCCCcccCCCCccccCCCCcccccccCCCCCCCCCccEEEeccC---CCeEEEec----CCeEEEEEcccc-------
Q 002196 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN---DSYVMSAS----GGKISLFNMMTF------- 874 (954)
Q Consensus 809 ~~~~~g~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~s----dg~i~iwd~~~~------- 874 (954)
. ...++| |......+.+.-+ .++++.+. .++++|.++...
T Consensus 190 ----------------------~--sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 190 ----------------------V--SQPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp ----------------------C--EEEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ----------------------c--cchhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 1 111333 3332222222111 12333333 378999998532
Q ss_pred -cEEEe-eC---CCCCCeeEEEecCCCCceEEEEecCccEEEEeccccceEEEecCCccceeEEEEecCCCeEEEecCCc
Q 002196 875 -KTMTT-FM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (954)
Q Consensus 875 -~~~~~-~~---~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg 949 (954)
+.... +- ...+-..++..|+ .-..+..-+.-|.|++||++||.++..-+-..+.|..-+-..+..-++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111 11 1234467888888 666888889999999999999999887665555555444443333333333444
No 299
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.87 E-value=1.1e-05 Score=62.96 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHHhhhcChHHHHHHHHHhcCCCc
Q 002196 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFF 36 (954)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (954)
|+.++.||.+||+.||.|.||..||.+|++||+|..
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 899999999999999999999999999999999854
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.0091 Score=65.36 Aligned_cols=246 Identities=11% Similarity=0.130 Sum_probs=138.1
Q ss_pred CeEEEEEcc-CCCEEEEEEc-CCEEEEEEeeCCcceeeeeeee-cccCCEEEEEE-------ecCCCceEEEEEcCC---
Q 002196 420 SVNRVMWSP-DGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAF-------SYPNKQLSVVTCGED--- 486 (954)
Q Consensus 420 ~V~~l~~sp-dg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~-------s~~~~~~~l~s~~~d--- 486 (954)
....|+|+| ++..|..+.. .+.|++.|.+++.... +.... ........++| +++++. ++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~-lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY-MIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE-EEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE-EEEEeCCCCCc
Confidence 567899999 4555555544 4678888887765432 11110 12235899999 999985 34444433
Q ss_pred ---CeEEEEECCC-CceE-----EEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCC-------CCCc-------
Q 002196 487 ---RVIKVWDAVT-GTKQ-----YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-------NLGS------- 543 (954)
Q Consensus 487 ---g~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~------- 543 (954)
..|.+.+... +... ..+... .....+++++.. +.++++-..++.|..+|+. +...
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~-g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPIN-GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTT-CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCC-CeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 2366776433 2221 222211 123455666643 3566667778889999987 4432
Q ss_pred ----e-eEeeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe--CCCCeE--EEEEecC---CC-----------C
Q 002196 544 ----R-VDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN--ESEGAV--KRTYHGL---GK-----------R 599 (954)
Q Consensus 544 ----~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd--~~~~~~--~~~~~~~---~~-----------~ 599 (954)
. ..+.. .....+.++|+|+|+.|+.+-. +...|+.++ ..++.. ...+.+. .+ .
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0 11222 2345689999999997776642 245677754 344432 1222221 00 1
Q ss_pred CeE-EEEEe-------CCCCEEEEEECCCeEEEEECCCCceeEEEecCCC----------------------CCCcceEE
Q 002196 600 SVG-VVQFD-------TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG----------------------LQASPCIR 649 (954)
Q Consensus 600 ~i~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~v~ 649 (954)
... .++.. +++.++++=.....|+.++ .+|. +.++.+.+. ......|+
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 45554 4555666556788999998 4553 444433210 12245788
Q ss_pred ECCC-CCEEEEEeCCCcEEEEEccCC
Q 002196 650 FNKE-GILLAVSTNDNGIKILANADG 674 (954)
Q Consensus 650 ~s~~-~~~l~s~~~dg~i~iwd~~~~ 674 (954)
++++ |.+.++=....+|+.+++...
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCC
Confidence 8886 666665556678888877654
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.011 Score=60.90 Aligned_cols=195 Identities=11% Similarity=0.138 Sum_probs=120.5
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeeeccC--Ccc---EEEEEe-c--CCeEEEEeCCCCC-ceeEeeC
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE--NIQ---FIFSTA-T--DGKIKAWLYDNLG-SRVDYDA 549 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---~l~s~s-~--dg~i~iwd~~~~~-~~~~~~~ 549 (954)
+++.....+-+.+||+ +|+.++.+.. +.++.+.+-+.- +|+ ++++.. . +++|.+|+++... .......
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666677789999998 8999988864 556666654421 111 223333 3 5789999774222 2222211
Q ss_pred ------CC-CceEEEEE--CCC-CC-EEEEEEeCCCCceEEEEEeC---C----CCeEEEEEecCCCCCeEEEEEeCCCC
Q 002196 550 ------PG-HSSTMMAY--SAD-GA-RLFSCGTNKEGESYLVEWNE---S----EGAVKRTYHGLGKRSVGVVQFDTTKN 611 (954)
Q Consensus 550 ------~~-~~v~~~~~--s~~-g~-~l~~~~~~~~~~~~i~iwd~---~----~~~~~~~~~~~~~~~i~~~~~~~~~~ 611 (954)
.. ..++.+++ +|. ++ ++++... ++.+..|++ . +.+.++++.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 46677777 775 44 3444433 235777766 2 346677877654 678888999899
Q ss_pred EEEEEECCCeEEEEECC-----CCceeEEEecCCCCCCcceEEE--CCCCC-EEEEEe-CCCcEEEEEccCCCeeEEEec
Q 002196 612 RFLAAGDEFMIKFWDMD-----NVNLLASIDADGGLQASPCIRF--NKEGI-LLAVST-NDNGIKILANADGIRLLRTVE 682 (954)
Q Consensus 612 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 682 (954)
.|+.+-++.-|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .+....+||.....+.+..+.
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99999998777777754 2445544432222235777877 45555 555555 567999999973335555553
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.019 Score=62.93 Aligned_cols=250 Identities=15% Similarity=0.153 Sum_probs=140.2
Q ss_pred CeeEEEEcC-CCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEE-------ccC
Q 002196 358 AVKSMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW-------SPD 429 (954)
Q Consensus 358 ~V~~~~~sp-~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------spd 429 (954)
....|+|+| ++..|+++-...+.|++.|..++....... .-.........++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 467999999 455577766666789999988876553200 01112346899999 999
Q ss_pred CCEEEEEEcCC-------EEEEEEeeC-Cccee-e-eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECC----
Q 002196 430 GTLFGVAYSKH-------IVHLYTYHG-GDELR-N-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV---- 495 (954)
Q Consensus 430 g~~l~s~~~dg-------~i~iwd~~~-~~~~~-~-~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~---- 495 (954)
|++|+++...+ .|.+.+... +.... . ...+.. -.....++++|++.. ++++...++.|..+|+.
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99777776554 255555443 22110 0 011221 123567788996665 57778888999999987
Q ss_pred ---CCce-----------EEE-ec-cCCCCeEEEeeeccCCccE-EEEEecCCeEEEEeCCCCCce----eEeeCC----
Q 002196 496 ---TGTK-----------QYI-FE-GHESPVYSICPHHKENIQF-IFSTATDGKIKAWLYDNLGSR----VDYDAP---- 550 (954)
Q Consensus 496 ---~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~----~~~~~~---- 550 (954)
++.. ... +. +....-..++|++++ .+ .++-+....|+.++.+..... ..+...
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G--~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTG--KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcCCC--CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 5543 112 21 123445789998776 54 455556778888765432211 111110
Q ss_pred C-----------CceE-EEEEC-------CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCC--------------
Q 002196 551 G-----------HSST-MMAYS-------ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-------------- 597 (954)
Q Consensus 551 ~-----------~~v~-~~~~s-------~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------- 597 (954)
+ .... .++.. ++|. |+++-. +...|+.++ .+|. +.++-+..
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~---~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDR---LNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEG---GGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCe-EEEEEC---CCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 0 1233 44443 3444 444332 245688888 4564 44443321
Q ss_pred C---------CCeEEEEEeCC-CCEEEEEECCCeEEEEECCCCcee
Q 002196 598 K---------RSVGVVQFDTT-KNRFLAAGDEFMIKFWDMDNVNLL 633 (954)
Q Consensus 598 ~---------~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 633 (954)
. .....++++++ +..+++=..+..|+.+++......
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 0 13456777776 544444446667777776654443
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.66 E-value=0.011 Score=61.05 Aligned_cols=198 Identities=14% Similarity=0.247 Sum_probs=126.1
Q ss_pred CCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecC----CCc--eEEEEEcC--CCeEEEEEC--CCCc
Q 002196 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP----NKQ--LSVVTCGE--DRVIKVWDA--VTGT 498 (954)
Q Consensus 429 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~--~~l~s~~~--dg~i~iwd~--~~~~ 498 (954)
...+++....++-+.+||+ .|+.+. .+.. +.++.+..-|+ |+. +.+++.-. +++|.+|++ .++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~---~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLH---SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEE---EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEE---EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666667788999999 666665 3332 55666666652 322 23455555 689999966 3443
Q ss_pred eEEEecc------CC-CCeEEEee--eccCCccEEEEEecCCeEEEEeCCCC-------CceeEeeCCCCceEEEEECCC
Q 002196 499 KQYIFEG------HE-SPVYSICP--HHKENIQFIFSTATDGKIKAWLYDNL-------GSRVDYDAPGHSSTMMAYSAD 562 (954)
Q Consensus 499 ~~~~~~~------~~-~~v~~~~~--~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~ 562 (954)
+..+.. .. ..+..+|+ ++.....+++....+|.+..|++... +....+.. +..+..+...+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 444421 11 55677777 44333247888889999999988431 22233443 457888999998
Q ss_pred CCEEEEEEeCCCCceEEEEEeCC-----CCeEEEEEec-CCCCCeEEEEE--eCCCC-EEEEEE-CCCeEEEEECC-CCc
Q 002196 563 GARLFSCGTNKEGESYLVEWNES-----EGAVKRTYHG-LGKRSVGVVQF--DTTKN-RFLAAG-DEFMIKFWDMD-NVN 631 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~~~-~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~-~~~ 631 (954)
...|+++-.+. -|+.+|.+ +++.+..+.. +-...+..+++ .++++ +|++.+ .+.++.+||.. +.+
T Consensus 191 ~g~Lyv~eEd~----GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 191 YGRLYIAEEDE----AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp TTEEEEEETTT----EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred CCeEEEecccc----eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence 88999886532 27777854 3556655532 22225778877 45555 677666 67799999996 666
Q ss_pred eeEEEec
Q 002196 632 LLASIDA 638 (954)
Q Consensus 632 ~~~~~~~ 638 (954)
.+..+..
T Consensus 267 ~vg~f~I 273 (355)
T 3amr_A 267 YVADFRI 273 (355)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7766653
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.66 E-value=0.00027 Score=82.73 Aligned_cols=232 Identities=7% Similarity=0.013 Sum_probs=132.7
Q ss_pred CCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCC----CceEEEeccCCCCeEEEe
Q 002196 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT----GTKQYIFEGHESPVYSIC 514 (954)
Q Consensus 439 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~ 514 (954)
.+.|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++.. ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 4567777777654332 1222345678999987775 455556678999999875 222222221122345566
Q ss_pred eeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe
Q 002196 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (954)
Q Consensus 515 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 594 (954)
+.+... .++++-...+.|.+++++.................++++|.+.+|+.+.... ...|..+++.... ...+.
T Consensus 460 vD~~~g-~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~--~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCSSS-BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS--SCCEEBCCSSSCC-CCEES
T ss_pred EEeeCC-cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC--CCeEEEEeCCCCC-eeEEE
Confidence 654332 4555556678899998875443333333334567889999777666653211 2347777765322 22222
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCCcEEEEEccC
Q 002196 595 GLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 595 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
...-.....++++|++..|+.+. ..+.|.++++........+...........+++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11122456799999876665554 677999999875443333322111223456666544 4555556678899999877
Q ss_pred CCeeEEEe
Q 002196 674 GIRLLRTV 681 (954)
Q Consensus 674 ~~~~~~~~ 681 (954)
+ +..+.+
T Consensus 615 G-~~~~~i 621 (699)
T 1n7d_A 615 G-SDVNLL 621 (699)
T ss_dssp E-EEEECC
T ss_pred C-CceEEe
Confidence 7 444444
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.58 E-value=0.00055 Score=80.10 Aligned_cols=211 Identities=9% Similarity=-0.057 Sum_probs=122.5
Q ss_pred CCeEEEEEccCCCEEEEEE-cCCEEEEEEeeC----CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 419 ASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHG----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
..+..++|++.+..|+.+. ..+.|+.+++.+ ..... .+.........+++.+.+.+ ++++-...+.|.+++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEe
Confidence 4567899999777766654 457888888875 11111 11111223556788766655 455666778999999
Q ss_pred CCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeC
Q 002196 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 572 (954)
+........+.........+++.+... .++++-.. .+.|..++++...............+.|+|+|++..|+.+-.
T Consensus 482 ~dg~~~~~l~~~~~~~P~giavDp~~g-~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~- 559 (699)
T 1n7d_A 482 TKGVKRKTLFREQGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS- 559 (699)
T ss_dssp SSSCCEEEECCCSSCCCCCEECCSSSS-CCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET-
T ss_pred cCCCceEEEEeCCCCCcceEEEccCCC-cEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec-
Confidence 765544433333334456777776442 33333322 267877777643333322222345678999998887777653
Q ss_pred CCCceEEEEEeCCCCeEEEEEecC-CCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 573 KEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
+...|..+|+........+... .......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 --~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 --KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp --TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred --CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 2456889998643322222211 1112344556543 3444445678899999888887776643
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.45 E-value=0.14 Score=54.16 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCeeEEEec-------CCCCceEEEEecCccEEEEecccc-ceE--EEe-cCCccceeEEEEecCCCeEEEec
Q 002196 885 PAATFLAFH-------PQDNNIIAIGMEDSSIQIYNVRVD-EVK--TKL-KGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 885 ~~v~~l~~s-------p~d~~~lasgs~dg~i~iwd~~~~-~~~--~~~-~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
.....++|. . +|.++++....+.|...+++.. +.. ..+ .+-...+..+++.|||.++++..
T Consensus 259 ~ap~G~~~y~g~~fp~~-~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGL-RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGG-TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCccc-CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 457788883 4 6777777666778888888753 332 233 23346789999999998777664
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.34 E-value=0.16 Score=51.16 Aligned_cols=237 Identities=11% Similarity=0.110 Sum_probs=145.3
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
+.-.+|..+ ++|.-. ..++.|+|+++.+.+.... ....|..=.|-.+.. |+-. .+.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~~-L~lV-T~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNT-VALV-TDN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSSSE-EEEE-ESS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCCCe-EEEE-cCC
Confidence 445588887 666554 6789999999998876522 235677777765443 3333 346
Q ss_pred EEEEEEeeCCcceeeeeeeeccc----CCEEEEEEecCCCceEEEEEc------CCCeEEEEECCCCceEEEeccCCCCe
Q 002196 441 IVHLYTYHGGDELRNHLEIEAHV----GSVNDLAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
.|+-|+++......+ .+..|. ..|..-..+++.+. ++++|- -.|.+.+|..+. +.-+.+++|...-
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecc-cccceeeeeeeee
Confidence 799999976432222 344333 45777788888885 233332 247888999654 4456778887655
Q ss_pred EEEeeeccCC-ccEEEEEecC---CeEEEEeCCCC---Cce-----eEeeC----CCCceEEEEECCCCCEEEEEEeCCC
Q 002196 511 YSICPHHKEN-IQFIFSTATD---GKIKAWLYDNL---GSR-----VDYDA----PGHSSTMMAYSADGARLFSCGTNKE 574 (954)
Q Consensus 511 ~~~~~~~~~~-~~~l~s~s~d---g~i~iwd~~~~---~~~-----~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~ 574 (954)
..+.+..... ...++.+... +.+++-++... ... ..... ...-..++..|+.-..++..+.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK--- 279 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 279 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC---
Confidence 4444332221 1233433332 57888888553 111 11111 1224457777877777777764
Q ss_pred CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
.+++++||+.++.++..-+-..+ .|...+-.....-++.....|.|.--.++..
T Consensus 280 -~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 280 -YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -TSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred -CcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 55799999999999887766555 6665555555556666667776666555543
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.018 Score=59.60 Aligned_cols=195 Identities=8% Similarity=-0.002 Sum_probs=98.5
Q ss_pred cCCCEEEEEEcC-----CEEEEEEeeCCcc--eeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----CeEEEEECC
Q 002196 428 PDGTLFGVAYSK-----HIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAV 495 (954)
Q Consensus 428 pdg~~l~s~~~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~i~iwd~~ 495 (954)
.+++.++.|+.+ ..+.+||..+++. ......+.........+.+ +++ +++.|+.+ ..+.+||+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCC
Confidence 367777777755 3588899877651 1111122211111222222 454 56666643 368899988
Q ss_pred CCceEEEeccCCCCe-EEEeeeccCCccEEEEEecC-----CeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEE
Q 002196 496 TGTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLF 567 (954)
Q Consensus 496 ~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~ 567 (954)
+.+....-....... .+++.. ++..++.|+.+ ..+.+||..+..-...-..... ....+.+ +++.++
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 211 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYV 211 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEE
Confidence 876443221111111 112221 23677777654 3578888876543222111111 1122222 566666
Q ss_pred EEEeCCCC-ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCce
Q 002196 568 SCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNL 632 (954)
Q Consensus 568 ~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 632 (954)
.++.++.. ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+-
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 66654332 2358899998876544322111111122222 356677777654 4678888877553
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.13 Score=54.40 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCeeEEEecCCCCceEEEEecCccEEEEeccccce------EEEecCCccceeEEEEecCCCeEEEec
Q 002196 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV------KTKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~------~~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
.....++|. +|.++++....+.|...+++.... ...+-.-...+..+++.|||.++++..
T Consensus 268 ~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 345778884 577776666667788877765431 122222236789999999998766653
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.27 E-value=0.062 Score=54.85 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=105.4
Q ss_pred eEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCcccccccc--CCCCCCeEEEEE---ccCCCEEE
Q 002196 360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS--SDYTASVNRVMW---SPDGTLFG 434 (954)
Q Consensus 360 ~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spdg~~l~ 434 (954)
-+++|++....++++.-..|+|..||...+..... .+ ..+. ......+..|.| .|++++++
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~-------------~~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI-------------DGASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC-------------TTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec-------------CCccccCCCcceeeEEEEeccCCCCcEEE
Confidence 37899887765666655789999999986644321 00 0000 011124589999 68888877
Q ss_pred EEEc-------------CCEEEEEEee---CCcceeeeeeeeccc-----------CCEEEEEEecCCCceEEEEEcCC-
Q 002196 435 VAYS-------------KHIVHLYTYH---GGDELRNHLEIEAHV-----------GSVNDLAFSYPNKQLSVVTCGED- 486 (954)
Q Consensus 435 s~~~-------------dg~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~~~~~~~l~s~~~d- 486 (954)
+... +..|..||+. +++.+... .+.... .....++..++|+ ..++++..
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~ 158 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM 158 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence 6542 5779999999 77655422 232221 2488999999999 67888888
Q ss_pred CeEEEEECCCCceEEEec------cCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC
Q 002196 487 RVIKVWDAVTGTKQYIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 487 g~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
+.|...+.. |+.+..+. ......+.|+++|++ ..|+.....|.+..+|+...
T Consensus 159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg--~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHS--NKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTT--TEEEEESSSSSEEEEECSSS
T ss_pred CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCC--CEEEEEcCCCeEEEEcCCCC
Confidence 888888754 33333221 112235688988766 56776666999999998853
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.25 E-value=0.018 Score=59.55 Aligned_cols=233 Identities=11% Similarity=0.012 Sum_probs=116.7
Q ss_pred CCCEEEEEE-cC-----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----CeEEEEECCCC
Q 002196 429 DGTLFGVAY-SK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTG 497 (954)
Q Consensus 429 dg~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~i~iwd~~~~ 497 (954)
++..++.|+ .+ ..+.+||..+++-.. ...+....... +++. .++. +++.|+.+ ..+.+||+.+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYV-ASVS-LHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccc-cEEE-ECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 33 357888887764221 11122111111 2222 2444 56667654 46899998887
Q ss_pred c---eEEEeccCCCCe-EEEeeeccCCccEEEEEecC-----CeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEE
Q 002196 498 T---KQYIFEGHESPV-YSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARL 566 (954)
Q Consensus 498 ~---~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l 566 (954)
+ ....-......- .+++.. ++..++.|+.+ ..+.+||..+..-...-..... ....+.+ +++.+
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 163 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIY 163 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEE
Confidence 6 333211111111 112211 23667777654 3578888776543322221111 1122222 66666
Q ss_pred EEEEeCCCC-ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeEEEecCC
Q 002196 567 FSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADG 640 (954)
Q Consensus 567 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 640 (954)
+.++.++.. ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+....-....
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 666654321 2348899998876544322111111122222 256677777653 468999998876544322221
Q ss_pred CCCCcceEEECCCCCEEEEEeCC-----CcEEEEEccCC
Q 002196 641 GLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (954)
Q Consensus 641 ~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iwd~~~~ 674 (954)
.......+. -++++++.|+.+ ..+.+||+.+.
T Consensus 243 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 243 PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 111112222 267777777765 35778888765
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.24 E-value=0.067 Score=55.40 Aligned_cols=236 Identities=9% Similarity=-0.056 Sum_probs=117.8
Q ss_pred CeEEEEEEcC--CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcC----CEE
Q 002196 369 QILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK----HIV 442 (954)
Q Consensus 369 ~~ll~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~d----g~i 442 (954)
..+++.|+.+ ..+.+||..+++...... .+. ....-.++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~----------~p~-------~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC----------PFE-------KRRDAACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC----------CSC-------CCBSCEEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC----------CCc-------ccceeEEEE--ECCEEEEEeCCCCCCcceE
Confidence 3466777653 578899988876443100 010 111112222 367777888765 568
Q ss_pred EEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC------CeEEEEECCCCceEEEeccCCCCe-EEEee
Q 002196 443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVTGTKQYIFEGHESPV-YSICP 515 (954)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~ 515 (954)
.+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+||..+.+....-....... .+++.
T Consensus 73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 888888764221 1122211111222222 454 56666655 468899998876443311111111 11221
Q ss_pred eccCCccEEEEEec---------CCeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeCCCC-ceEEEEEe
Q 002196 516 HHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEG-ESYLVEWN 583 (954)
Q Consensus 516 ~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~-~~~i~iwd 583 (954)
. ++.+++.|+. -..+.+||..+..-...-..... ....+.+ +++.++.++.++.. ...+.+||
T Consensus 148 ~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 148 A---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp E---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEE
T ss_pred E---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEee
Confidence 1 2256666654 34477888876542222111111 1122222 56666666643321 13488999
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeE
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLA 634 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 634 (954)
+.+.+....-.......-..++.. ++..++.|+.+ ..+.+||..+.+-..
T Consensus 223 ~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 223 IKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp TTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 988765433211111111222222 56777777743 468899988765443
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.22 E-value=0.046 Score=57.89 Aligned_cols=230 Identities=13% Similarity=0.076 Sum_probs=117.7
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee---ecccCCEEEEEEecC---CCceEEEEEcCC-----C
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCGED-----R 487 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~~---~~~~~l~s~~~d-----g 487 (954)
.....++|.|||++++ +..+|.|.+++ .++ ......+ .........++|+|+ +..+ +++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l-Yv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYV-YAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEE-EEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEE-EEEEecCCCCCcc
Confidence 4567999999998555 45779898888 443 2211111 122356889999998 5543 3333322 6
Q ss_pred eEEEEECCCCc-----eE-EEec---cCCCCeEEEeeeccCCccEEEEEec-------------CCeEEEEeCCCC----
Q 002196 488 VIKVWDAVTGT-----KQ-YIFE---GHESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNL---- 541 (954)
Q Consensus 488 ~i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~---- 541 (954)
.|..|+...+. .+ ..+. +.......++|.+++ .+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 78888876442 11 1233 111123567777654 45454332 245665655430
Q ss_pred --------CceeEeeCCCCceEEEEECC-CCCEEEEEEeCCCC-----ceEEEEEeCCC----------------CeEEE
Q 002196 542 --------GSRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEG-----ESYLVEWNESE----------------GAVKR 591 (954)
Q Consensus 542 --------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~-----~~~i~iwd~~~----------------~~~~~ 591 (954)
.....+.........++|+| +|. |+++-...+. ...|.+..... ..++.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00111111112467789999 555 4444332221 01233322111 01122
Q ss_pred EEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCce------eEEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL------LASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 592 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
.+.. .. ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.+.++..
T Consensus 263 ~~~~-~~-ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQ-GF-PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTT-CC-CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred ecCC-CC-CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 2211 11 3456777 4565555555667788777764321 122211 134678999999998776654
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.17 E-value=0.3 Score=50.80 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=58.0
Q ss_pred CccEEEeccCCCeEEEec--CCeEEEEEcccccE------------------EEeeCCCCCCeeEEEecCCCCceEEEEe
Q 002196 845 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------------MTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (954)
Q Consensus 845 ~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~------------------~~~~~~h~~~v~~l~~sp~d~~~lasgs 904 (954)
....++|+|+|.+.++-. ++.=.|--+..|.. +..+..+......|+|.. |.+++..-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 456899999987766543 33222222222211 112221223567788874 56666555
Q ss_pred cCccEEEEeccccce----EEEecCCccceeEEEEecCCCeEEEec
Q 002196 905 EDSSIQIYNVRVDEV----KTKLKGHQKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 905 ~dg~i~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~s 946 (954)
..+.|....++.+.. ..-+.+...++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 566676666665432 233445557899999999998766644
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.15 E-value=0.026 Score=58.50 Aligned_cols=232 Identities=12% Similarity=0.063 Sum_probs=114.6
Q ss_pred CCEEEEEEcC----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----CeEEEEECCCCceE
Q 002196 430 GTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVTGTKQ 500 (954)
Q Consensus 430 g~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 500 (954)
+..++.|+.+ ..+..||+.+.+- .....+......- +++.. ++. +++.|+.+ ..+.+||..+.+..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~~-~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMVYM-AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEEEE-TTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEEEE-CCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455556543 3577888876542 2111122111111 22222 444 56666654 36889998877644
Q ss_pred EEeccCCCCe-EEEeeeccCCccEEEEEecCC-----eEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeC
Q 002196 501 YIFEGHESPV-YSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTN 572 (954)
Q Consensus 501 ~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~ 572 (954)
..-....... .+++.. ++..++.|+.++ .+.+||..+..-...-..... ....+. -+++.++.++.+
T Consensus 91 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 165 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYD 165 (302)
T ss_dssp EECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEE
T ss_pred eCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCC
Confidence 3221111111 112221 226777777653 467788776442222111111 112222 256666666654
Q ss_pred CCC---ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeEEEecCCCCCC
Q 002196 573 KEG---ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQA 644 (954)
Q Consensus 573 ~~~---~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 644 (954)
+.. ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+-...-..... .
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r 242 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--R 242 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--C
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--c
Confidence 332 2348899998876544322111111122222 256677777653 3689999988655433222211 1
Q ss_pred cceEEECCCCCEEEEEeCCC-----cEEEEEccCC
Q 002196 645 SPCIRFNKEGILLAVSTNDN-----GIKILANADG 674 (954)
Q Consensus 645 v~~v~~s~~~~~l~s~~~dg-----~i~iwd~~~~ 674 (954)
....+..-++++++.|+.++ .+.+||+.+.
T Consensus 243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 11122223677777777653 4788888765
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.13 E-value=0.034 Score=57.65 Aligned_cols=231 Identities=8% Similarity=0.011 Sum_probs=116.4
Q ss_pred CEEEEEEcC--CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC----CeEEEEECCCCceEEEec
Q 002196 431 TLFGVAYSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 431 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 504 (954)
..++.|+.+ ..+.+||..+++-.. ...+.........+. -++. +++.|+.+ ..+.+||+.+++....-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 345555543 468888887764221 111221111122222 2444 56777654 678899998876543322
Q ss_pred cCCCCe-EEEeeeccCCccEEEEEecC------CeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeCCCC
Q 002196 505 GHESPV-YSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEG 575 (954)
Q Consensus 505 ~~~~~v-~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~ 575 (954)
...... .+++.. ++.+++.|+.+ ..+.+||..+..-...-..... ....+. -+++.++.++.++..
T Consensus 88 ~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 88 PPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNN 162 (306)
T ss_dssp CSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCT
T ss_pred CCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCC
Confidence 111111 112211 22677777765 4588888876543222111111 112222 266666666654332
Q ss_pred -----ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeEEEecCCCCCCc
Q 002196 576 -----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQAS 645 (954)
Q Consensus 576 -----~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v 645 (954)
...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||..+.+-...-.........
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 24588999988765433221111111223222 56666766632 46889999886543332222111122
Q ss_pred ceEEECCCCCEEEEEeCC-----CcEEEEEccCC
Q 002196 646 PCIRFNKEGILLAVSTND-----NGIKILANADG 674 (954)
Q Consensus 646 ~~v~~s~~~~~l~s~~~d-----g~i~iwd~~~~ 674 (954)
.++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 23333 67788888754 46788888775
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.04 E-value=0.21 Score=52.68 Aligned_cols=233 Identities=9% Similarity=-0.036 Sum_probs=120.8
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee---ecccCCEEEEEEecC---CCceEEEEEc---CC---
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI---EAHVGSVNDLAFSYP---NKQLSVVTCG---ED--- 486 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~~---~~~~~l~s~~---~d--- 486 (954)
.....++|.|||++++ +..+|.|++++ .+++ .....+ .........|+|+|+ +..+ +++-+ .+
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l-yv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWV-YLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEE-EEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEE-EEEEeccCCCCCc
Confidence 4568999999998555 55779998886 3443 211111 122356889999998 5543 33332 23
Q ss_pred -CeEEEEECCCC--c-----eE-EEecc-CCCCeEEEeeeccCCccEEEEEec-------------CCeEEEEeCCCCC-
Q 002196 487 -RVIKVWDAVTG--T-----KQ-YIFEG-HESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDNLG- 542 (954)
Q Consensus 487 -g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~~- 542 (954)
..|..|+...+ . .+ ..+.. .......+.|.+++ .+.++.+. .|.|.-++.+..-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 57777876544 1 11 11221 11123567777654 55554332 2455555544220
Q ss_pred ------ceeEeeCCCCceEEEEECC-CCCEEEEEEeCCCCceEEEEEeCCC--------C--------eEEEEEecCCCC
Q 002196 543 ------SRVDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE--------G--------AVKRTYHGLGKR 599 (954)
Q Consensus 543 ------~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~--------~--------~~~~~~~~~~~~ 599 (954)
....+.........++|+| +|+++++ -...+....|.+..... + .++..+. +...
T Consensus 182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~-d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ 259 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT-EHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SETW 259 (354)
T ss_dssp TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE-ECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCC
T ss_pred CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE-ecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCCc
Confidence 0111111122456899999 5654444 32222112233322110 0 1122221 1112
Q ss_pred CeEEEEEe-------CCCCEEEEEECCCeEEEEECCCC-cee--EEEecCCCCCCcceEEECCCCCEEEEEe
Q 002196 600 SVGVVQFD-------TTKNRFLAAGDEFMIKFWDMDNV-NLL--ASIDADGGLQASPCIRFNKEGILLAVST 661 (954)
Q Consensus 600 ~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~v~~v~~s~~~~~l~s~~ 661 (954)
....++|. .+|.++++.-..+.|...++... +.. ..+- ......+..+++.|||.+.++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEe
Confidence 46677773 45666665557778888888753 332 2221 11134678999999997776654
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.02 E-value=0.28 Score=51.73 Aligned_cols=236 Identities=9% Similarity=0.003 Sum_probs=119.8
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeee----ecccCCEEEEEEecC---CCceEEEEEcC------
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI----EAHVGSVNDLAFSYP---NKQLSVVTCGE------ 485 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~s~~---~~~~~l~s~~~------ 485 (954)
.....|+|.|||+.|+++...|.|++++.. +........+ .........++|+|+ +..+ .++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l-Yv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRI-WLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEE-EEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEE-EEEEeCCCCCCC
Confidence 456899999999944456678999888753 3211111111 122346789999996 5543 333222
Q ss_pred -CCeEEEEECCCC--c--eEE-EeccC------CCCeEEEeeeccCCccEEEEEec-------------CCeEEEEeCCC
Q 002196 486 -DRVIKVWDAVTG--T--KQY-IFEGH------ESPVYSICPHHKENIQFIFSTAT-------------DGKIKAWLYDN 540 (954)
Q Consensus 486 -dg~i~iwd~~~~--~--~~~-~~~~~------~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~ 540 (954)
...|..|++..+ . ... .+... ...-..+.|.+++ .+.++.+. .|.|.-++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666433 1 111 11111 1113467777654 44444433 24566666553
Q ss_pred CC------------ceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEe--------CCCC-------------
Q 002196 541 LG------------SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN--------ESEG------------- 587 (954)
Q Consensus 541 ~~------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd--------~~~~------------- 587 (954)
.- ....+.........++|+|+...|+++-...++...|.+.. ...+
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 20 11112112235788999994444554433221111222211 0000
Q ss_pred --------eEEEEEecCCCCCeEEEEEeC-------CCCEEEEEECCCeEEEEECCCCceeEEEecC-CCCCCcceEEEC
Q 002196 588 --------AVKRTYHGLGKRSVGVVQFDT-------TKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFN 651 (954)
Q Consensus 588 --------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s 651 (954)
.++..+..+ . ....+.|.. ++.++++.-..+.|...++..++.......- .....+..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~-~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDS-P-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSC-C-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCC-c-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 011122211 1 455677763 4556665557788888888766544332211 112367899999
Q ss_pred CCCCEEEEE
Q 002196 652 KEGILLAVS 660 (954)
Q Consensus 652 ~~~~~l~s~ 660 (954)
|||.+.++.
T Consensus 332 pdG~lyv~t 340 (353)
T 2g8s_A 332 PDGYLYVLT 340 (353)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999866643
No 319
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.91 E-value=0.18 Score=54.67 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=71.8
Q ss_pred CCccEEEeccCCCeEEEec--CCeEEEEEcccccE-------------EEeeCCCCCCeeEEEecCCCCceEEEEecCcc
Q 002196 844 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~s--dg~i~iwd~~~~~~-------------~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~ 908 (954)
.....+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 4556789999999999887 78999999874211 22333 234478999999 8876677778999
Q ss_pred EEEEecccc----------ceEEEecCCccceeEEEE------ecCCCeEEEec
Q 002196 909 IQIYNVRVD----------EVKTKLKGHQKRITGLAF------SNTLNVLVSSG 946 (954)
Q Consensus 909 i~iwd~~~~----------~~~~~~~~h~~~V~~l~~------s~dg~~l~s~s 946 (954)
|--|++... ..+.++.-|-. +-.+.- .|||+||++..
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 999999864 46666665532 233333 57999999874
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.87 E-value=0.055 Score=55.94 Aligned_cols=193 Identities=7% Similarity=-0.001 Sum_probs=95.3
Q ss_pred CCCEEEEEEcCC-----EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCC-----eEEEEECCCCc
Q 002196 429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTGT 498 (954)
Q Consensus 429 dg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 498 (954)
+++.++.|+.++ .+.+||..+.+-.. ...+.........+.+ +++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 677777777543 57888887754221 1122211111222222 444 566666543 67889988776
Q ss_pred eEEEeccCCCC-eEEEeeeccCCccEEEEEecC-------CeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEE
Q 002196 499 KQYIFEGHESP-VYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFS 568 (954)
Q Consensus 499 ~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~ 568 (954)
....-...... -.+++.. ++..++.|+.+ ..+.+||..+..-...-..... ....+.+ +++.++.
T Consensus 136 W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 210 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAV 210 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred EeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEE
Confidence 44321111111 1122221 22566666543 3478888876542222111111 1222222 5666677
Q ss_pred EEeCCCC-ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCce
Q 002196 569 CGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNL 632 (954)
Q Consensus 569 ~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 632 (954)
++.++.. ...+.+||+.+.+....-.......-..++. -++..++.|+.++ .+.+||..+.+-
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 6654321 2348899998876544322111111112222 3566777777543 478888877643
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.84 E-value=0.36 Score=49.99 Aligned_cols=234 Identities=9% Similarity=-0.023 Sum_probs=115.3
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc-----C------
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-----K------ 439 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~-----d------ 439 (954)
+++.|+ ..+.+||..+++.... . +..........+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~-~-----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCA-S-----------------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEE-E-----------------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEecC-C-----------------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 555665 5799999988764321 0 1111122233344457888888874 1
Q ss_pred CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC--------CeEEEEECCCCceEEEeccCCCCe-
Q 002196 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQYIFEGHESPV- 510 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v- 510 (954)
..+.+||..+++- .....+....... +++.. +++ +++.|+.+ ..+.+||..+.+....-.......
T Consensus 67 ~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~~-~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEW-LGMPPLPSPRCLF-GLGEA-LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEE-EECCCBSSCEESC-EEEEE-TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeE-EECCCCCcchhce-eEEEE-CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1267778776542 2111111111111 12222 444 56666632 468899988875432211111111
Q ss_pred EEEeeeccCCccEEEEEec-C-----CeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeCCCC-ceEEEE
Q 002196 511 YSICPHHKENIQFIFSTAT-D-----GKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEG-ESYLVE 581 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~-~~~i~i 581 (954)
.+++. . ++..++.|+. + ..+.+||..+..-......... ....+.+ +++.++.++.++.+ ...+.+
T Consensus 142 ~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 142 HTVLS-H--MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp CEEEE-E--TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEE
T ss_pred eeEEE-E--CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEE
Confidence 11222 1 2256677765 2 3578888876532221111111 1122222 66777777765432 235888
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC--------------CeEEEEECCCCceeEE
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------------FMIKFWDMDNVNLLAS 635 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 635 (954)
||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+-...
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9998876544322111111122222 256677777753 2477888877655444
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.79 E-value=0.7 Score=48.68 Aligned_cols=237 Identities=11% Similarity=0.109 Sum_probs=144.8
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+.... ...+|..=.|-.+.. |+.. .+.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~--------------------~~e~VvfWkWis~~~-l~lV-T~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNT-VALV-TDN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEEEETTE-EEEE-CSS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--------------------cCCCceEEEecCCCe-EEEE-cCC
Confidence 566788887 555543 6789999999988876522 234566666654443 3333 456
Q ss_pred EEEEEEeeCCcceeeeeeeeccc----CCEEEEEEecCCCceEEEEEc------CCCeEEEEECCCCceEEEeccCCCCe
Q 002196 441 IVHLYTYHGGDELRNHLEIEAHV----GSVNDLAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
.|+-|++++.....+ .+..|. ..|..-..+++.+. ++++|- -.|.+.+|..+.+ .-+.+.||...-
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 799999976432222 344443 45777888888885 233332 2478889996554 456778887655
Q ss_pred EEEeeeccCC-ccEEEEEecC---CeEEEEeCCCC---Cc-----eeEeeC----CCCceEEEEECCCCCEEEEEEeCCC
Q 002196 511 YSICPHHKEN-IQFIFSTATD---GKIKAWLYDNL---GS-----RVDYDA----PGHSSTMMAYSADGARLFSCGTNKE 574 (954)
Q Consensus 511 ~~~~~~~~~~-~~~l~s~s~d---g~i~iwd~~~~---~~-----~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~ 574 (954)
..+.+..... ...++.+... +.+++-++... .. ...... ...-..++..++.-..++..+.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--- 278 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence 5544332221 1234444432 78899988653 11 111111 1224567888888888887764
Q ss_pred CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
.+++++||+.++.++..-+-... .|...+-.....-++.....|.|.--.++..
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred -CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 55799999999999877665444 5655555555555666666666655554443
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.72 E-value=0.092 Score=54.60 Aligned_cols=224 Identities=9% Similarity=-0.020 Sum_probs=108.0
Q ss_pred CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC-----C------CeEEEEECCCCceEEEeccCCC
Q 002196 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-----D------RVIKVWDAVTGTKQYIFEGHES 508 (954)
Q Consensus 440 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~~~~~~ 508 (954)
..+.+||..+++-.. ..+..........+...++. +++.|+. . ..+.+||..+++... +..-..
T Consensus 13 ~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSS
T ss_pred CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCc
Confidence 568889988765321 22222212222223334555 5666663 1 137788988876432 211111
Q ss_pred Ce--EEEeeeccCCccEEEEEecC--------CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCC--Cc
Q 002196 509 PV--YSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE--GE 576 (954)
Q Consensus 509 ~v--~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~--~~ 576 (954)
+- .+++.. ++..++.|+.+ ..+.+||..+..-..............+...+++.++.++.+.. ..
T Consensus 88 ~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 88 PRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp CEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred chhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 11 112221 22566666642 34788888765322211111111111112235666666664221 12
Q ss_pred eEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCC-----eEEEEECCCCceeEEEecCCCCCCcceEEEC
Q 002196 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-----MIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (954)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (954)
..+.+||+.+.+....-.......-.+++. -++..++.|+.++ .+.+||..+.+-...-...........+.
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-- 241 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-- 241 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--
Confidence 358899998876543222111111122222 2567777777543 58899998875544332221111112222
Q ss_pred CCCCEEEEEeCCC--------------cEEEEEccCC
Q 002196 652 KEGILLAVSTNDN--------------GIKILANADG 674 (954)
Q Consensus 652 ~~~~~l~s~~~dg--------------~i~iwd~~~~ 674 (954)
-++++++.|+.++ .+.+||+.+.
T Consensus 242 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 2567777777532 3667777665
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.65 E-value=0.079 Score=54.90 Aligned_cols=234 Identities=8% Similarity=-0.010 Sum_probs=114.6
Q ss_pred cCCCEEEEEEcC----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC----C-----CeEEEEEC
Q 002196 428 PDGTLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----D-----RVIKVWDA 494 (954)
Q Consensus 428 pdg~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~----d-----g~i~iwd~ 494 (954)
-++..++.|+.+ ..+.+||..+++-.. ...+....... +++.. ++. +++.|+. + ..+.+||+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~~-~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCVV-GGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEEE-TTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEEE-CCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356677777642 357888887764221 11111111111 22222 444 5666665 2 46888998
Q ss_pred CCCceEEEeccCCCCe-EEEeeeccCCccEEEEEecC-----CeEEEEeCCCCCceeEeeCCC--CceEEEEECCCCCEE
Q 002196 495 VTGTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAPG--HSSTMMAYSADGARL 566 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l 566 (954)
.+.+....-....... .+++.. ++..++.|+.+ ..+.+||..+..-........ .....+.+ +++.+
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence 8775433211111111 112211 22566666643 357788877643222111111 11222222 56666
Q ss_pred EEEEeCCCC-ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeEEEecCC
Q 002196 567 FSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADG 640 (954)
Q Consensus 567 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~ 640 (954)
+.++.++.. ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-....
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 666654332 23588999988765432211111111222222 56677777654 468999998865443322221
Q ss_pred CCCCcceEEECCCCCEEEEEeCC-----CcEEEEEccCC
Q 002196 641 GLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (954)
Q Consensus 641 ~~~~v~~v~~s~~~~~l~s~~~d-----g~i~iwd~~~~ 674 (954)
.... .+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 252 ~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 252 RRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred Cccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111 12222 267777777754 35778887765
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.56 E-value=0.42 Score=49.94 Aligned_cols=189 Identities=8% Similarity=0.047 Sum_probs=107.4
Q ss_pred EEEEEEecCCCceEEEEE------------cCCCeEEEEECCC--CceE-EEecc-----CCCCeEEEeeeccCCcc-EE
Q 002196 466 VNDLAFSYPNKQLSVVTC------------GEDRVIKVWDAVT--GTKQ-YIFEG-----HESPVYSICPHHKENIQ-FI 524 (954)
Q Consensus 466 v~~~~~s~~~~~~~l~s~------------~~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~~~~~~-~l 524 (954)
.-.+...|+|. .++++ ..+|.|.++|..+ ++.. ..+.+ .......+.+..+.++. +|
T Consensus 52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566677664 33333 2689999999874 2221 12222 22356677766643332 34
Q ss_pred EEE-ec--CCeEEEEeCCCCCceeE----eeC-CCCceEEEEECCCCCEEEEEEe---C----------CCCceEEEEEe
Q 002196 525 FST-AT--DGKIKAWLYDNLGSRVD----YDA-PGHSSTMMAYSADGARLFSCGT---N----------KEGESYLVEWN 583 (954)
Q Consensus 525 ~s~-s~--dg~i~iwd~~~~~~~~~----~~~-~~~~v~~~~~s~~g~~l~~~~~---~----------~~~~~~i~iwd 583 (954)
+.+ .. +.+|.+|+++....... +.. .-...+.+.+.++|++.++... + +...+.++.+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 46788887765433222 221 1236789999999987766431 0 11235577777
Q ss_pred CCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCC-Ccee--EEEecCCCCCCcceEEECC-CCCEEE
Q 002196 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN-VNLL--ASIDADGGLQASPCIRFNK-EGILLA 658 (954)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~v~~s~-~~~~l~ 658 (954)
.. +......+.. ..+.++|+||++.++.+. ..+.|+.|++.. ++.. ..+.. ....-.+++.+ +|.+.+
T Consensus 210 ~~--~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEE
T ss_pred CC--eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEE
Confidence 64 2222222221 567899999998887776 678999999863 3321 22321 23446778888 487776
Q ss_pred EEeCC
Q 002196 659 VSTND 663 (954)
Q Consensus 659 s~~~d 663 (954)
++..+
T Consensus 283 a~~~~ 287 (355)
T 3sre_A 283 GCHPN 287 (355)
T ss_dssp EEESC
T ss_pred EecCC
Confidence 55433
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.56 E-value=0.11 Score=63.08 Aligned_cols=96 Identities=6% Similarity=0.045 Sum_probs=60.0
Q ss_pred ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCC
Q 002196 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (954)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (954)
...+.+.|+..+..+....- ...+.-++|..+.++.-. ..++.|+|+.+...+...... ..|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~---e~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC---CCceEEEecCCC-
Confidence 34688889888654422211 122345788877666654 679999999998888877654 245555665443
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEe
Q 002196 656 LLAVSTNDNGIKILANADGIRLLRTV 681 (954)
Q Consensus 656 ~l~s~~~dg~i~iwd~~~~~~~~~~~ 681 (954)
.|+..+ +..|+-|++.....+.+.+
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHH
Confidence 444443 4589999986543333333
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.52 E-value=0.22 Score=51.45 Aligned_cols=195 Identities=7% Similarity=0.023 Sum_probs=95.6
Q ss_pred CCCEEEEEEc----C-----CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-----CeEEEEEC
Q 002196 429 DGTLFGVAYS----K-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDA 494 (954)
Q Consensus 429 dg~~l~s~~~----d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-----g~i~iwd~ 494 (954)
+++.++.|+. + ..+.+||..+++-.. ...+.........+.+ +++ +++.|+.+ ..+.+||+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~yd~ 144 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGVI--DGH--IYAVGGSHGCIHHNSVERYEP 144 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEEE--TTE--EEEECCEETTEECCCEEEEET
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCcCccccEEEEE--CCE--EEEEcCCCCCcccccEEEECC
Confidence 6777777765 2 357888887654221 1112211111222222 454 56666543 46889998
Q ss_pred CCCceEEEeccCCCCe-EEEeeeccCCccEEEEEecC-----CeEEEEeCCCCCceeEeeCC--CCceEEEEECCCCCEE
Q 002196 495 VTGTKQYIFEGHESPV-YSICPHHKENIQFIFSTATD-----GKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARL 566 (954)
Q Consensus 495 ~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l 566 (954)
.+.+....-....... .+++.. ++.+++.|+.+ ..+.+||..+..-....... ......+.+ +++.+
T Consensus 145 ~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 219 (308)
T 1zgk_A 145 ERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIY 219 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred CCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEE
Confidence 8775433211111111 112221 23667777654 45788887764322211111 111222223 56666
Q ss_pred EEEEeCCCC-ceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeE
Q 002196 567 FSCGTNKEG-ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLA 634 (954)
Q Consensus 567 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 634 (954)
+.++.++.. ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+-..
T Consensus 220 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 220 AAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 666554221 2348899998876543221111111122222 256677777643 467888888765443
No 328
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.48 E-value=0.93 Score=46.26 Aligned_cols=165 Identities=10% Similarity=0.113 Sum_probs=106.4
Q ss_pred eecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEE-ecc----CCC--CeEEEee---eccCCccEEEEEe
Q 002196 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEG----HES--PVYSICP---HHKENIQFIFSTA 528 (954)
Q Consensus 459 ~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----~~~--~v~~~~~---~~~~~~~~l~s~s 528 (954)
+......-.+++|.+.... ++++.-..++|..||...+..... +.+ ... .+..+.+ .+. +.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~-~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~ 84 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQV-FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMK 84 (334)
T ss_dssp ECCTTCCCSCEEEETTTTE-EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCE-EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEc
Confidence 3344445567899886664 455555799999999876644333 222 111 2467777 343 35666443
Q ss_pred -------------cCCeEEEEeCC---CCCceeEeeCC-------------CCceEEEEECCCCCEEEEEEeCCCCceEE
Q 002196 529 -------------TDGKIKAWLYD---NLGSRVDYDAP-------------GHSSTMMAYSADGARLFSCGTNKEGESYL 579 (954)
Q Consensus 529 -------------~dg~i~iwd~~---~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 579 (954)
.+..+..||+. +.+........ ......++..++|+..++.+... ..|
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~---~~I 161 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM---PAI 161 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS---CEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC---CeE
Confidence 26779999998 66665544321 12588999999999888877540 337
Q ss_pred EEEeCCCCeEEEEEe-c----CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 002196 580 VEWNESEGAVKRTYH-G----LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (954)
Q Consensus 580 ~iwd~~~~~~~~~~~-~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 630 (954)
..++.... .+..+. . ......+.++++|++..|++....|.|..+|+.+.
T Consensus 162 ~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 162 ARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 77776533 222221 1 11123668999999999998877999999998853
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.47 E-value=1.1 Score=46.87 Aligned_cols=208 Identities=12% Similarity=0.081 Sum_probs=116.4
Q ss_pred CCeEEEEEccCCCEEEEE------------EcCCEEEEEEeeCCc-ceeeeeeeec-----ccCCEEEEEEec--CCCce
Q 002196 419 ASVNRVMWSPDGTLFGVA------------YSKHIVHLYTYHGGD-ELRNHLEIEA-----HVGSVNDLAFSY--PNKQL 478 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~------------~~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~~~~s~--~~~~~ 478 (954)
...-.++..|+|..++++ ..+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 345567788887665555 268999999987421 12221 2332 234677788766 35422
Q ss_pred EEEEEcC--CCeEEEEECCCCc----eEEEeccC-CCCeEEEeeeccCCccEEEEEe-----------------cCCeEE
Q 002196 479 SVVTCGE--DRVIKVWDAVTGT----KQYIFEGH-ESPVYSICPHHKENIQFIFSTA-----------------TDGKIK 534 (954)
Q Consensus 479 ~l~s~~~--dg~i~iwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s-----------------~dg~i~ 534 (954)
++++-.. +.+|.+|++..+. .+..+.+. -...+++.+.+++ .+.++.. ..|.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3444333 5678888765432 22334432 2346778777654 5555543 124455
Q ss_pred EEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCC-CeE--EEEEecCCCCCeEEEEEeC-CC
Q 002196 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-GAV--KRTYHGLGKRSVGVVQFDT-TK 610 (954)
Q Consensus 535 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~-~~ 610 (954)
.+|. .+.. .....-...+.++|+||++.++++... ...|..|++.. +.. .+.+.. ......+++.+ +|
T Consensus 207 r~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~---~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G 278 (355)
T 3sre_A 207 YYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTG 278 (355)
T ss_dssp EECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTC
T ss_pred EEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC---CCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCC
Confidence 5544 2222 222222357899999999999887642 34688888753 332 233322 22567789999 58
Q ss_pred CEEEEEECC-CeEEEEECC--CCceeEEEe
Q 002196 611 NRFLAAGDE-FMIKFWDMD--NVNLLASID 637 (954)
Q Consensus 611 ~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 637 (954)
++.+++..+ +.|..|+.. .+..+..+.
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 888877633 344445543 244444443
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.43 E-value=0.14 Score=53.88 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCccEEEeccCCCeEEEecCCeEEEEEccccc------------EEEeeCC------CCCCeeEEEecCC--CCceEEEE
Q 002196 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFK------------TMTTFMP------PPPAATFLAFHPQ--DNNIIAIG 903 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~------------~~~~~~~------h~~~v~~l~~sp~--d~~~lasg 903 (954)
..+..+..||+|++||..++..|.|-.+..+. ..+.+.- ...+|..+.|+|. .+..|++-
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 36788999999999999999999999887321 1122221 2467999999993 23478899
Q ss_pred ecCccEEEEeccccc--eEEEec---------CCccceeEEEEecCCCeEEE--ecCCcce
Q 002196 904 MEDSSIQIYNVRVDE--VKTKLK---------GHQKRITGLAFSNTLNVLVS--SGADSQV 951 (954)
Q Consensus 904 s~dg~i~iwd~~~~~--~~~~~~---------~h~~~V~~l~~s~dg~~l~s--~s~Dg~I 951 (954)
..|+.|++||+.... .. .+. .+...|.+++|+++|-.|.. ....|-|
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 999999999998631 12 222 23367999999998876665 4577765
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.38 E-value=0.24 Score=51.41 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=105.8
Q ss_pred EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC----CC-------eEEEEECCCCceEEEeccCCCC
Q 002196 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE----DR-------VIKVWDAVTGTKQYIFEGHESP 509 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~ 509 (954)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.+||..+.+.... ..-..+
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-PPLPSA 99 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEEC-SCBSSC
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEEC-CCCCcc
Confidence 37888888765322 12221111122222334555 5677773 11 277889887764332 111111
Q ss_pred --eEEEeeeccCCccEEEEEecC-------CeEEEEeCCCCCceeEeeCCCCce-EEEEECCCCCEEEEEEeCCC--Cce
Q 002196 510 --VYSICPHHKENIQFIFSTATD-------GKIKAWLYDNLGSRVDYDAPGHSS-TMMAYSADGARLFSCGTNKE--GES 577 (954)
Q Consensus 510 --v~~~~~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~~~~--~~~ 577 (954)
-.+++.. ++..++.|+.+ ..+.+||..+..-...-....... .+++. .+++.++.++.+.. ...
T Consensus 100 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 100 RCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTN 175 (318)
T ss_dssp BCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCC
T ss_pred ccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccc
Confidence 1122221 22567777654 247778877544222211111111 11222 46666666664321 123
Q ss_pred EEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC-----CeEEEEECCCCceeEEEecCCCCCCcceEEECC
Q 002196 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (954)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (954)
.+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+-...-..... .....+..-
T Consensus 176 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~ 252 (318)
T 2woz_A 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSL 252 (318)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEE
T ss_pred eEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEE
Confidence 48899998876544322111111122333 256677777632 3578899887654333222211 111122223
Q ss_pred CCCEEEEEeCC--------------CcEEEEEccCC
Q 002196 653 EGILLAVSTND--------------NGIKILANADG 674 (954)
Q Consensus 653 ~~~~l~s~~~d--------------g~i~iwd~~~~ 674 (954)
++++++.|+.+ ..+.+||+.+.
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 56777777653 35777887765
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.29 E-value=0.56 Score=48.61 Aligned_cols=233 Identities=9% Similarity=0.031 Sum_probs=109.8
Q ss_pred EEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEc----CC------
Q 002196 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----KH------ 440 (954)
Q Consensus 371 ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~----dg------ 440 (954)
+++.|+. .+..||..+++.... . ...........+...++..++.|+. ++
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~-~-----------------~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 77 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLT-A-----------------LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQ 77 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEE-E-----------------ECTTSCSSEEEEECSSSCEEEEESSCC-------CCC
T ss_pred hhhcccc--ceEEECCCCCceecc-c-----------------CCccCCccceEEEEECCEEEEECCcccCccccCCCcc
Confidence 5555543 378899888764321 0 0000111223334567888888873 12
Q ss_pred -EEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCC-------CeEEEEECCCCceEEEeccCCCCe--
Q 002196 441 -IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-------RVIKVWDAVTGTKQYIFEGHESPV-- 510 (954)
Q Consensus 441 -~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v-- 510 (954)
.+.+||..+++-.. ...+....... +++.. +++ +++.|+.+ ..+.+||+.+.+....-. ...+.
T Consensus 78 ~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~~-~~~--iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~ 151 (318)
T 2woz_A 78 SYFFQLDNVSSEWVG-LPPLPSARCLF-GLGEV-DDK--IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYG 151 (318)
T ss_dssp BEEEEEETTTTEEEE-CSCBSSCBCSC-EEEEE-TTE--EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEES
T ss_pred ccEEEEeCCCCcEEE-CCCCCcccccc-ceEEE-CCE--EEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccc
Confidence 26677776654221 11122111111 22222 444 45566543 368889988776443211 11111
Q ss_pred EEEeeeccCCccEEEEEec------CCeEEEEeCCCCCceeEeeCCCC--ceEEEEECCCCCEEEEEEeCCCC-ceEEEE
Q 002196 511 YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEG-ESYLVE 581 (954)
Q Consensus 511 ~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~-~~~i~i 581 (954)
.+++. . ++.+++.|+. -..+.+||..+..-...-..... ....+. -+++.++.++.+..+ ...+.+
T Consensus 152 ~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 152 HNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp CEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEE
T ss_pred cEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEE
Confidence 11121 1 2256666654 23588888876542222111111 112222 266777777654432 235778
Q ss_pred EeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECC--------------CeEEEEECCCCceeEE
Q 002196 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE--------------FMIKFWDMDNVNLLAS 635 (954)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 635 (954)
||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||..+.+-...
T Consensus 227 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 227 FDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 9998876443221111101112222 345666666643 3467777776554433
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.22 E-value=1.5 Score=46.04 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=56.3
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC---CCEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD---GTLF 433 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 433 (954)
...+.|+|.|+|+.++ ++...|.|++++.. +..... + -+ .. .+..........++|+|+ +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~~--~--~~-------~~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSAP--L--SG-------VP-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECCC--C--BS-------CC-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEE-EEeCCceEEEEeCC-CceeeE--e--cC-------Cc-ccccCCCCCceeEEECCCCCCCCEE
Confidence 3578999999998443 44567999999853 321100 0 00 00 112223456789999996 5555
Q ss_pred EEEE-c-------CCEEEEEEeeCCc-ceeeeee-eec------ccCCEEEEEEecCCC
Q 002196 434 GVAY-S-------KHIVHLYTYHGGD-ELRNHLE-IEA------HVGSVNDLAFSYPNK 476 (954)
Q Consensus 434 ~s~~-~-------dg~i~iwd~~~~~-~~~~~~~-~~~------h~~~v~~~~~s~~~~ 476 (954)
..+. . ...|..|++..+. .+..... +.. .......++|.|||.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~ 142 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY 142 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc
Confidence 4442 2 2356666665431 1111111 111 111235799999995
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.07 E-value=0.14 Score=53.97 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=80.5
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeee-------eeeEEEeccCCCccccccccCCCCCCeEEEEEcc-
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV-------KSFKVWELGACSMPLQASLSSDYTASVNRVMWSP- 428 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 428 (954)
+.|..+..||+|+. ||.. .+..|.|-.+..+..... ...+.|.+... ......+|..+.|+|
T Consensus 66 ~~i~qlvlSpsG~l-LAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDL-LCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSE-EEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCE-EEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEeccc
Confidence 37889999999994 4444 356899999885432221 11222333210 112468899999999
Q ss_pred --CCCEEEEEEcCCEEEEEEeeCCcceee-------eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE
Q 002196 429 --DGTLFGVAYSKHIVHLYTYHGGDELRN-------HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (954)
Q Consensus 429 --dg~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd 493 (954)
.|..|++-..|+.|++||+........ ...+......|.+++|..++=.+++++....|.|+-.-
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 467899999999999999986321110 00112233568889998877665565666777776543
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.98 E-value=0.2 Score=53.11 Aligned_cols=147 Identities=8% Similarity=0.006 Sum_probs=67.0
Q ss_pred CeEEEEECCCCceEEEeccCC-CCe-EEEeeeccCCccEEEEEec------CCeEEEEeCCCCCceeEee----CCCCce
Q 002196 487 RVIKVWDAVTGTKQYIFEGHE-SPV-YSICPHHKENIQFIFSTAT------DGKIKAWLYDNLGSRVDYD----APGHSS 554 (954)
Q Consensus 487 g~i~iwd~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~----~~~~~v 554 (954)
..+.+||+.+.+....-.... ..- .+++.. . +.+++.|+. ...+..||++......... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~-~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--G-DKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--T-TEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--C-CEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 578999998876443221111 111 222222 2 256666654 2346677763222222211 111111
Q ss_pred EEEEECCCCCEEEEEEeCCCC------------------ceEEEEEeCCCCeEEE--EEecCCCCCeEEEEEeCCCCEEE
Q 002196 555 TMMAYSADGARLFSCGTNKEG------------------ESYLVEWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFL 614 (954)
Q Consensus 555 ~~~~~s~~g~~l~~~~~~~~~------------------~~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~ 614 (954)
...+...+++.++.++.+..+ ...+.+||+.+.+... .+..... . ..++..+++.++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~--~~~~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-Y--GVSLPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-S--SEEEEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-c--ceeEEeCCEEEE
Confidence 111222356666666643211 0247789988764333 2222211 1 222334677888
Q ss_pred EEECCC------eEEEEECCCCceeEEEecC
Q 002196 615 AAGDEF------MIKFWDMDNVNLLASIDAD 639 (954)
Q Consensus 615 ~~~~dg------~i~iwd~~~~~~~~~~~~~ 639 (954)
.||.++ .|.++++++++.+.....+
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 888442 4666788888777666544
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.79 E-value=0.25 Score=52.28 Aligned_cols=238 Identities=10% Similarity=0.003 Sum_probs=109.0
Q ss_pred CCCEEEEEEcC-CEEEEEEeeC-CcceeeeeeeecccCCEEEEEEecCCCceEEEEEcC-C---------CeEEEEECCC
Q 002196 429 DGTLFGVAYSK-HIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-D---------RVIKVWDAVT 496 (954)
Q Consensus 429 dg~~l~s~~~d-g~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~-d---------g~i~iwd~~~ 496 (954)
+++.++.|+.+ ..+.+||..+ .........+......-.+++.. +++ +++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGN--LYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTE--EEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCE--EEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 67777777654 4678888763 12222221222111111122222 444 5566665 2 4688999888
Q ss_pred CceEEEeccC-CCCeEEEeeeccCCccEEEEEecC---------------------------------------CeEEEE
Q 002196 497 GTKQYIFEGH-ESPVYSICPHHKENIQFIFSTATD---------------------------------------GKIKAW 536 (954)
Q Consensus 497 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~d---------------------------------------g~i~iw 536 (954)
.+....-... .......+... ++.+++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVH--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEE--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEEE--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 7644322111 11111111112 23677777754 468888
Q ss_pred eCCCCCceeEeeCCCC-ce-EEEEECCCCCEEEEEEeCCCC--ceEEEEEeC--CCCeEEEEEecC-CCCCeEEEEEeCC
Q 002196 537 LYDNLGSRVDYDAPGH-SS-TMMAYSADGARLFSCGTNKEG--ESYLVEWNE--SEGAVKRTYHGL-GKRSVGVVQFDTT 609 (954)
Q Consensus 537 d~~~~~~~~~~~~~~~-~v-~~~~~s~~g~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~~~~~-~~~~i~~~~~~~~ 609 (954)
|..+..-...-..... .. .+++.. +++.++.++.++.+ ...+..||+ .+.+....-... ........+...+
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred eCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence 8876543322222211 11 222222 56666666543322 223667776 444433221111 1101111122335
Q ss_pred CCEEEEEECC----------------------CeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEEEEEeCCC---
Q 002196 610 KNRFLAAGDE----------------------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN--- 664 (954)
Q Consensus 610 ~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~s~~~dg--- 664 (954)
+..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEECGGGC
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeCCCCC
Confidence 6666776632 2578899887654443332221 222233334678888888653
Q ss_pred ---cEEEEEccCC
Q 002196 665 ---GIKILANADG 674 (954)
Q Consensus 665 ---~i~iwd~~~~ 674 (954)
.|.++++.++
T Consensus 331 ~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 331 AVTDSVLITVKDN 343 (357)
T ss_dssp EEEEEEEEEC-CC
T ss_pred EeeeEEEEEEcCc
Confidence 3555677766
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.36 E-value=4 Score=44.41 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCC------CCCCcceEEECCC
Q 002196 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG------GLQASPCIRFNKE 653 (954)
Q Consensus 600 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~ 653 (954)
....++|.|+|+++++-...+.|++++..++.......... .......++|+|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 56789999999877665444579888876555432222211 2334568999995
No 338
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.34 E-value=0.013 Score=45.43 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc--HHHHHHHHhcccHHHHHHHHc
Q 002196 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN--MRYFEDMVTNGEWDEVEKYLS 58 (954)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (954)
++|+.+=|++||..+||.+++.+|.+|.++..+ ...-....++-.|..|+.+-+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 468999999999999999999999999998875 122346677778877766533
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.24 E-value=3.1 Score=42.40 Aligned_cols=180 Identities=9% Similarity=0.076 Sum_probs=100.3
Q ss_pred EEEEcCCCCeEEEEEEcC-------------CeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc
Q 002196 361 SMDFHPVQQILLVVGTNM-------------GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (954)
+--++++|.++..+...+ ..|+..++..++... +.. . .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~--~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--D--PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--S--CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--C--CccEEE
Confidence 455788999777776654 357777776664322 111 1 123788
Q ss_pred cCCCEEEEEE--cCCE--EEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe
Q 002196 428 PDGTLFGVAY--SKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (954)
Q Consensus 428 pdg~~l~s~~--~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 503 (954)
+++++|+-.. .++. |...+++... .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 3444 4444554332 22 2333332 456788886 3445445678999998776654444
Q ss_pred ccCCCCeEEEeeeccCCccEEEEEecC--CeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 504 EGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 504 ~~~~~~v~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
.+ ... ..+.|.+ .+|+-...+ ..|..-+++...... +. ...+ ..|+|++++|+.+...+ ...|..
T Consensus 184 ~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt--~~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNPVV-LT--EANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCCEE-CS--CSCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCeEE-Ee--CCCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 2344554 566655443 345555555443322 21 1233 34788899888764322 245666
Q ss_pred EeCCC
Q 002196 582 WNESE 586 (954)
Q Consensus 582 wd~~~ 586 (954)
-++..
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 66643
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.1 Score=53.98 Aligned_cols=192 Identities=11% Similarity=0.120 Sum_probs=104.1
Q ss_pred EEEEEcCCCeEEEEECCCCceEEEeccC-CCCeEEEe-eeccCCccEEEEE-ecCCeEEEEeCCCCCceeEeeCC----C
Q 002196 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGH-ESPVYSIC-PHHKENIQFIFST-ATDGKIKAWLYDNLGSRVDYDAP----G 551 (954)
Q Consensus 479 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~----~ 551 (954)
.++.++.||.|.-+|..+|+.+..++.. ..++.... .....++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5889999999999999999999988754 12222221 1111122333333 68999999998776443332211 1
Q ss_pred CceEE---EEE-C----CCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCC------eEEEEEe-----CCCCE
Q 002196 552 HSSTM---MAY-S----ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS------VGVVQFD-----TTKNR 612 (954)
Q Consensus 552 ~~v~~---~~~-s----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------i~~~~~~-----~~~~~ 612 (954)
.++.. ..+ . ..+..+++++. ++.+...|+.+|+.+..+....... ..+.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 0 13446666665 4459999999999999987542111 0011110 12356
Q ss_pred EEEEECCCeEEEEECCCCceeEEEecCC-CCCCcc-----eEEECCCCCEEEEEeCCCcEEEEEccCCCee
Q 002196 613 FLAAGDEFMIKFWDMDNVNLLASIDADG-GLQASP-----CIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (954)
Q Consensus 613 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~-----~v~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 677 (954)
++.+..+..+.+.+ ++|+ +..+.... ....+. +-..+.|+.++ .++.||.|..+|..+|...
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEE
Confidence 77777777777766 4443 22111000 000000 00112346664 4788999999999888543
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.66 E-value=0.7 Score=43.81 Aligned_cols=100 Identities=18% Similarity=0.105 Sum_probs=60.9
Q ss_pred ccEEEeccCCCeEEEecCCeEEEEEcccccEEE-----e-e-CCCCCCeeEEEecCCCCceEEEEecCccEEEEeccccc
Q 002196 846 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMT-----T-F-MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (954)
Q Consensus 846 v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~~-----~-~-~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~ 918 (954)
-.++.|.|+|.+.++ +||.|+-++-.+...-. + + .+-=..+..|.|.| +|.+.|+. |+.++-+.-.++.
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 478899999999888 78999888753311110 0 1 11113579999999 99888776 7775544333221
Q ss_pred ------eEEEec-CCccceeEEEEecCCCeEEEecCCcce
Q 002196 919 ------VKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQV 951 (954)
Q Consensus 919 ------~~~~~~-~h~~~V~~l~~s~dg~~l~s~s~Dg~I 951 (954)
....+- +.-...+.+.|+++|...+.. +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 111111 333345567799999776655 6544
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.45 E-value=1.4 Score=53.78 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=132.2
Q ss_pred EEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEEEcCC
Q 002196 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (954)
Q Consensus 361 ~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~~~dg 440 (954)
+.-.+|..+ ++|.-. ..++.|+|+++...+... ....+|..=.|-.+... +.. .+.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~--------------------~~~e~VvfWkWis~~~l-~lV-T~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAH--------------------TMTDDVTFWKWISLNTV-ALV-TDN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhccc--------------------ccCCCceEEEecCCCee-EEE-cCC
Confidence 445677776 555543 678999999988776531 12346666667554433 333 345
Q ss_pred EEEEEEeeCCcceeeeeeeecc----cCCEEEEEEecCCCceEEEEEc------CCCeEEEEECCCCceEEEeccCCCCe
Q 002196 441 IVHLYTYHGGDELRNHLEIEAH----VGSVNDLAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIFEGHESPV 510 (954)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v 510 (954)
.|.-|++.+..... ..+..| ...|..-..+++.+. ++++|- -.|.+.+|..+.+ ..+.+.||.+.-
T Consensus 126 aVyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F 201 (1630)
T 1xi4_A 126 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (1630)
T ss_pred eEEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhh
Confidence 69999997532221 123333 346777788888885 233332 3578889986544 344556665544
Q ss_pred EEEeeeccCCc-cEEEEEec---CCeEEEEeCCCC---Ccee-----EeeC----CCCceEEEEECCCCCEEEEEEeCCC
Q 002196 511 YSICPHHKENI-QFIFSTAT---DGKIKAWLYDNL---GSRV-----DYDA----PGHSSTMMAYSADGARLFSCGTNKE 574 (954)
Q Consensus 511 ~~~~~~~~~~~-~~l~s~s~---dg~i~iwd~~~~---~~~~-----~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~ 574 (954)
..+........ ..++.+.. .+.+++-++... .... .... ...-..++..++.-..++..+.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk--- 278 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec---
Confidence 33333221111 22222222 267888888653 1111 0111 1223456777777777777654
Q ss_pred CceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCc
Q 002196 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (954)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (954)
.+.+.++|+.+|.++..-+-... .|...+-.....-++.....|.|.--.+....
T Consensus 279 -~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 279 -YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred -CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 45699999999988765443333 45444444333444444556655555544433
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.93 E-value=0.18 Score=47.72 Aligned_cols=101 Identities=14% Similarity=0.029 Sum_probs=63.9
Q ss_pred CCccEEEeccCCCeEEEecCCeEEEEEcccccEE------EeeC--CCCCCeeEEEecCCCCceEEEEecCccEEEEecc
Q 002196 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM------TTFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (954)
Q Consensus 844 ~~v~~~~~s~dg~~la~~sdg~i~iwd~~~~~~~------~~~~--~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~~ 915 (954)
..+..++|+|+|.+.|+ .+|.++-.+..+.... ..+- +... -.++.|.| +|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 36779999999998777 8887766665441111 1110 1111 47899999 8988877 66989888764
Q ss_pred ccceE-------EEecCCccceeEEEEecCCCeEEEecCCcce
Q 002196 916 VDEVK-------TKLKGHQKRITGLAFSNTLNVLVSSGADSQV 951 (954)
Q Consensus 916 ~~~~~-------~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I 951 (954)
+...- ..-.+-=..+..|.|.|+|.+.+.. |+.+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 32111 1111111457899999999876665 6655
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.86 E-value=2.8 Score=43.27 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=68.5
Q ss_pred CEEEEEEcCCEEEEEEeeCCcceeeeeeeecc-cCCEEEEEE--ecCCCceEEEEE-cCCCeEEEEECCCCceEEEecc-
Q 002196 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAF--SYPNKQLSVVTC-GEDRVIKVWDAVTGTKQYIFEG- 505 (954)
Q Consensus 431 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~--s~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~- 505 (954)
..++.++.||.|.-.|.++|+..-. +... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 4677888999998888888876653 2221 112211100 011222 23333 6899999999988865544431
Q ss_pred ---CCCCeEEEeeeccC-------CccEEEEEecCCeEEEEeCCCCCceeEeeCC
Q 002196 506 ---HESPVYSICPHHKE-------NIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (954)
Q Consensus 506 ---~~~~v~~~~~~~~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 550 (954)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++....+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1122221 000000 2358899999999999999999888877643
No 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.79 E-value=9.1 Score=41.57 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=35.3
Q ss_pred CCeEEEEEccCCC-EEEEEEcCCEEEEEEeeCCcceeeeeeee---------cccCCEEEEEEecC
Q 002196 419 ASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIE---------AHVGSVNDLAFSYP 474 (954)
Q Consensus 419 ~~V~~l~~spdg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~~ 474 (954)
..-+.|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 56666789999999754321111111111 11456889999997
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.20 E-value=8.9 Score=39.66 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC---CC
Q 002196 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD---GT 431 (954)
Q Consensus 355 h~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 431 (954)
.-...+.|+|.|||+ ++++-...|.|++++..+++...... ...+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~-------------~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGE-------------VPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-------------CTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecc-------------cCceeecCCCCceeeEeccccccCC
Confidence 445788999999998 66665548999999876665321100 00112334577899999995 44
Q ss_pred EEEEE-E--cCCEEEEEEeeCCc----c---eeeee-eee-cccCCEEEEEEecCCCceEEEEE
Q 002196 432 LFGVA-Y--SKHIVHLYTYHGGD----E---LRNHL-EIE-AHVGSVNDLAFSYPNKQLSVVTC 483 (954)
Q Consensus 432 ~l~s~-~--~dg~i~iwd~~~~~----~---~~~~~-~~~-~h~~~v~~~~~s~~~~~~~l~s~ 483 (954)
+|... + .++.|.-|.+..+. . .+.+. .+. .....-..|+|.|||. ++++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44433 2 34556666665421 1 11111 111 1112346799999997 44443
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.19 E-value=2.7 Score=48.87 Aligned_cols=200 Identities=10% Similarity=0.026 Sum_probs=102.5
Q ss_pred cCCCEEEEEEcC----CEEEEEEeeCCcceeeeee-----eecccCCEEEEEEec-CCCceEEEEEcCC------CeEEE
Q 002196 428 PDGTLFGVAYSK----HIVHLYTYHGGDELRNHLE-----IEAHVGSVNDLAFSY-PNKQLSVVTCGED------RVIKV 491 (954)
Q Consensus 428 pdg~~l~s~~~d----g~i~iwd~~~~~~~~~~~~-----~~~h~~~v~~~~~s~-~~~~~~l~s~~~d------g~i~i 491 (954)
.++..++.||.+ ..+.+||..+++-...... +..... -.+++..+ +++ +++.||.+ ..+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~-~hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARM-CHTFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCB-SCEEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcccc-ceEEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 567777888754 3588889887653221101 111111 12333333 555 56666643 35888
Q ss_pred EECCCCceEEEeccCCCCe-EEEeeeccCCccEEEEEecCC--eEEEEeCCCCCceeEee-----CCCCceEEEEECCC-
Q 002196 492 WDAVTGTKQYIFEGHESPV-YSICPHHKENIQFIFSTATDG--KIKAWLYDNLGSRVDYD-----APGHSSTMMAYSAD- 562 (954)
Q Consensus 492 wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~- 562 (954)
||..+.+....-....... .+++... ++..++.|+.++ .+.+||..+..-..... ........+.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 9988865433211111111 1122111 336778887655 68888887644222111 11112233555555
Q ss_pred CCEEEEEEeCCCC---ceEEEEEeCCCCe------EEEEEe--cCCCCCeEEEEEeCCCCEEEEEEC--------CCeEE
Q 002196 563 GARLFSCGTNKEG---ESYLVEWNESEGA------VKRTYH--GLGKRSVGVVQFDTTKNRFLAAGD--------EFMIK 623 (954)
Q Consensus 563 g~~l~~~~~~~~~---~~~i~iwd~~~~~------~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~--------dg~i~ 623 (954)
++.++.||.+.++ ...+.+||+.+.. ....-. .... .-.+++...++..++.||. ...|.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666666653322 3458899988876 222211 1111 1223333343677777773 34689
Q ss_pred EEECCCCcee
Q 002196 624 FWDMDNVNLL 633 (954)
Q Consensus 624 iwd~~~~~~~ 633 (954)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.91 E-value=9 Score=38.90 Aligned_cols=182 Identities=7% Similarity=0.069 Sum_probs=102.4
Q ss_pred EEEEccCCCEEEEEEcC--------------CEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEE--cCC
Q 002196 423 RVMWSPDGTLFGVAYSK--------------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC--GED 486 (954)
Q Consensus 423 ~l~~spdg~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~--~~d 486 (954)
+--++++|++|+.+... ..|+..++++++... +... .+..|+++++.+++... ..+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSC
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCC
Confidence 34568899998877553 357777777664222 2211 12367888986433331 345
Q ss_pred CeEEEEECCCCceEEEeccCCCCeEEEeeeccCCccEEEEEec-CCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCE
Q 002196 487 RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (954)
Q Consensus 487 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 565 (954)
..|+..++.... ...+..+.. ..+.+.+ +.|+-.+. ...|..-+++......... .... ..++|++.+
T Consensus 129 ~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g--~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~ 197 (302)
T 3s25_A 129 TSLYRIRIDGEE-KKKIKNHYL----FTCNTSD--RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTN 197 (302)
T ss_dssp EEEEEEETTSCC-CEEEESSCC----CCSEEET--TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTE
T ss_pred ceEEEEECCCCC-eEEEeCCCc----eEeeEEC--CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCE
Confidence 567777766443 344443332 3455555 45555444 5678777776654443332 2222 345699999
Q ss_pred EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE--CCCeEEEEECCCCc
Q 002196 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVN 631 (954)
Q Consensus 566 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 631 (954)
|+...... ...|..-++..... ..+.. . .+ ..|+|++.+|+.+. ..+.|..-++....
T Consensus 198 iy~t~~~~--~~~I~~~~ldG~~~-~~Lt~--~-~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 198 VYYMDVNR--DNAIVHVNINNPNP-VVLTE--A-NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEGGG--TTEEEEECSSSCCC-EECSC--S-CE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEcCC--CcEEEEEECCCCCe-EEEeC--C-Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 98876432 13576667665442 33322 1 33 34788888888764 34567777765433
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.86 E-value=13 Score=40.63 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=132.1
Q ss_pred EEEEEcCCEEEEEEeeCCcceeeeeeeecc----------------------cCCE--EEEEEe---cCCCceEEEEEcC
Q 002196 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAH----------------------VGSV--NDLAFS---YPNKQLSVVTCGE 485 (954)
Q Consensus 433 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h----------------------~~~v--~~~~~s---~~~~~~~l~s~~~ 485 (954)
+.+|+..|.|+|+-+.+++.++.+..+... .+.. ..+.+. .||+. +++-.-.
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGry-lfiNdka 151 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKY-LFINDKA 151 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEE-EEEEETT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEE-EEEecCC
Confidence 567788899999999888776643322210 0111 123333 24663 3445556
Q ss_pred CCeEEEEECCCCceEEEecc-CCCCeEEEeeeccCCccEEEEEecC-------CeE------------EEEeCCCCCcee
Q 002196 486 DRVIKVWDAVTGTKQYIFEG-HESPVYSICPHHKENIQFIFSTATD-------GKI------------KAWLYDNLGSRV 545 (954)
Q Consensus 486 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~d-------g~i------------~iwd~~~~~~~~ 545 (954)
...|-..+++.-++-..+.- ....+..+++...++..|++.++.. |.. ...|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 77888888888776655542 4556777777532333677777642 221 111222222222
Q ss_pred EeeCCCCceEEEEECCCCCEEEEEEeCCCC-----------ceEEEEEe-------------------------CCC---
Q 002196 546 DYDAPGHSSTMMAYSADGARLFSCGTNKEG-----------ESYLVEWN-------------------------ESE--- 586 (954)
Q Consensus 546 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~-----------~~~i~iwd-------------------------~~~--- 586 (954)
.... ......+...++|++.++.+.+.+. .-.+.+++ .+.
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2111 1123345567888888887733211 12334444 332
Q ss_pred -Ce-EEEEEecCCCCCeEEEEEeCCCCEEEEEE-CCCeEEEEECCCC------ce-------eEEEecCCCCCCcceEEE
Q 002196 587 -GA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNV------NL-------LASIDADGGLQASPCIRF 650 (954)
Q Consensus 587 -~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~~v~~v~~ 650 (954)
+. ..+-+... . ....+.++|||+++++++ .+.++.++|+.+. +. ....+ -+. .....+|
T Consensus 311 ~~~~~~~~iP~p-k-sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~Gl-GPlHt~F 385 (638)
T 3sbq_A 311 KDSKFTRYVPVP-K-NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGL-GPLHTTF 385 (638)
T ss_dssp BCCSSEEEEEES-S-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCS-CEEEEEE
T ss_pred cCCceEEEEeCC-C-CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCC-cccEEEE
Confidence 11 11111111 1 345688999999999988 7889999998741 11 22222 122 3467899
Q ss_pred CCCCCEEEEEeCCCcEEEEEccC
Q 002196 651 NKEGILLAVSTNDNGIKILANAD 673 (954)
Q Consensus 651 s~~~~~l~s~~~dg~i~iwd~~~ 673 (954)
.++|....+..-|..|.-|++..
T Consensus 386 d~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 386 DGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCceEeeeeecceEEEEeccH
Confidence 99996556666899999999864
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.38 E-value=5.8 Score=39.86 Aligned_cols=222 Identities=11% Similarity=0.078 Sum_probs=110.2
Q ss_pred CCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccCCCEEEEE
Q 002196 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (954)
Q Consensus 357 ~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 436 (954)
..|..++..... .++. . ||.|+.|-......+.. + ......|..++...+-..++
T Consensus 24 ~~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs~~l-- 78 (282)
T 3qhy_B 24 SGVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHSLAL-- 78 (282)
T ss_dssp SSCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEEEEE--
T ss_pred CCCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEEEEE--
Confidence 357777765543 3333 4 89999998655332210 0 01123566666654333222
Q ss_pred EcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEeccCCCCeEEEeee
Q 002196 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (954)
Q Consensus 437 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 516 (954)
. ||.|..|-......+... ..-...|..++...+.. ++. . ||.|+.|-....-.+.........|..++..
T Consensus 79 ~-~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs---~al-~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G 149 (282)
T 3qhy_B 79 K-DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS---YAL-K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG 149 (282)
T ss_dssp E-TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE---EEE-E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred E-CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE---EEE-e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc
Confidence 4 899999976643322211 11124688887764432 333 3 8999999755422111111123456666543
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCC-eEEEEEec
Q 002196 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHG 595 (954)
Q Consensus 517 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~ 595 (954)
.. ..++ -. ||.|..|-.......-........|..++...+. .++. .++ .++.|-.... ++- +..
T Consensus 150 ~~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~al-~~G----~v~~wG~n~~gqlg--~p~ 215 (282)
T 3qhy_B 150 VY---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL-KDG----KVIAWGDNRYKQTT--VPT 215 (282)
T ss_dssp SS---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEE-ETT----EEEEEECCTTSTTC--CCG
T ss_pred cC---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEEE-ECC----eEEEEECCCCCCCC--CCc
Confidence 21 2333 33 7999999765443322111112345555544332 2222 222 3777754332 110 000
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCC
Q 002196 596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 596 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (954)
.....|..++..... .++. . ||.|+.|-...
T Consensus 216 ~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 216 EALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp GGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTC
T ss_pred ccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCC
Confidence 111246666655433 3333 3 89999997655
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.53 E-value=5.8 Score=46.04 Aligned_cols=193 Identities=13% Similarity=0.041 Sum_probs=99.8
Q ss_pred EEEEEcCC----CeEEEEECCCCceEEEe-c-----cCCCCe-EEEeeeccCCccEEEEEecCC------eEEEEeCCCC
Q 002196 479 SVVTCGED----RVIKVWDAVTGTKQYIF-E-----GHESPV-YSICPHHKENIQFIFSTATDG------KIKAWLYDNL 541 (954)
Q Consensus 479 ~l~s~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~v-~~~~~~~~~~~~~l~s~s~dg------~i~iwd~~~~ 541 (954)
+++.||.+ ..+.+||..+++....- . ...... .+++.... ++..++.|+.++ .+.+||..+.
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 56666643 46888998877654432 1 011111 12222210 336777776543 4677887764
Q ss_pred CceeEeeCCCC-ceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEEEEe---cC-CCCCeEEEEEeCC-CCEEEE
Q 002196 542 GSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH---GL-GKRSVGVVQFDTT-KNRFLA 615 (954)
Q Consensus 542 ~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~-~~~~i~~~~~~~~-~~~l~~ 615 (954)
.-...-..... .-.+++...+++.++.||.+... .+.+||+.+......-. .. .......+.+..+ +..++.
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 32221111111 11233333478888888766543 58999998876544321 00 1112223455555 556666
Q ss_pred EEC--C-----CeEEEEECCCCce-----eEEEec-CCCCCCcceEEECCCCCEEEEEeCC--------CcEEEEEccCC
Q 002196 616 AGD--E-----FMIKFWDMDNVNL-----LASIDA-DGGLQASPCIRFNKEGILLAVSTND--------NGIKILANADG 674 (954)
Q Consensus 616 ~~~--d-----g~i~iwd~~~~~~-----~~~~~~-~~~~~~v~~v~~s~~~~~l~s~~~d--------g~i~iwd~~~~ 674 (954)
||. + ..+.+||+.+... ...+.. ......-.+++...++++++.|+.+ ..+.+||+.++
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 764 2 4689999988762 222211 1001111233333337777777742 45888888776
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.74 E-value=21 Score=38.68 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=33.5
Q ss_pred CeEEEEEeCCCC-EEEEEECCCeEEEEECCCC---ceeEEEecC-------CCCCCcceEEECCC
Q 002196 600 SVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNV---NLLASIDAD-------GGLQASPCIRFNKE 653 (954)
Q Consensus 600 ~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~~-------~~~~~v~~v~~s~~ 653 (954)
....|+|.|++. .++++...|.|++++.... ..+..+... ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456889999996 5666678899999975432 122222110 01234567888885
No 353
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=89.41 E-value=1.7 Score=38.91 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccccchhhcccC
Q 002196 72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYG 134 (954)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 134 (954)
++|.++-+.||||+..+...+|..+|++--.-+.....+.+++|..+.......+++....+.
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr 114 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFR 114 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHH
Confidence 899999999999999999999999998544433444567888888777665555555444443
No 354
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.12 E-value=28 Score=37.68 Aligned_cols=113 Identities=14% Similarity=0.205 Sum_probs=62.0
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccC--CCCCCeEEEEEccC---C
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS--DYTASVNRVMWSPD---G 430 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spd---g 430 (954)
-...+.|+|.|+|+ ++++-...+.|++++..+++.... .++. ..+. ........|+|+|| +
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~-----~~~~--------~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTV-----FQVP--------EIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-----EECT--------TCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEE-----ecCC--------ccccccCCCCceeEEEECCCcCcC
Confidence 34678999999998 665543334788888765543221 0110 0111 13467889999996 5
Q ss_pred CEEEEEEc-------------CCEEEEEEeeCCc-ce---eeee-eee-cccCCEEEEEEecCCCceEEEEE
Q 002196 431 TLFGVAYS-------------KHIVHLYTYHGGD-EL---RNHL-EIE-AHVGSVNDLAFSYPNKQLSVVTC 483 (954)
Q Consensus 431 ~~l~s~~~-------------dg~i~iwd~~~~~-~~---~~~~-~~~-~h~~~v~~~~~s~~~~~~~l~s~ 483 (954)
.+|..+.. ...|.-|++..+. .+ +.+. .+. ........|+|.|||. +++.+|
T Consensus 92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 55554432 2345556654321 11 1111 111 1123478999999997 344444
No 355
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=88.92 E-value=1.3 Score=38.65 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccccchh
Q 002196 72 IFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQ 129 (954)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 129 (954)
++|.++-+.||||+..+..++|..++.+--.-+... .+.+++|..+.....+.+++.
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~ 89 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNF 89 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHH
Confidence 899999999999999999999999998654444444 777888887766555554443
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.78 E-value=39 Score=38.94 Aligned_cols=241 Identities=7% Similarity=0.020 Sum_probs=122.3
Q ss_pred EEE-EcCCCCeEEEEEEcCC----eEEEEeCCCCceeeeeeeEEEeccCCCccccccccC--CCC-----CCeEEEEEcc
Q 002196 361 SMD-FHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS--DYT-----ASVNRVMWSP 428 (954)
Q Consensus 361 ~~~-~sp~g~~ll~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~-----~~V~~l~~sp 428 (954)
.+. ++|++++++++-+..| .|+++|+.+++.+.. . +. ... .....++|..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~-----------------~~~~~k~~~~~~~~~~~~~W~d 194 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-G-----------------FEPITNSGKLLEGKFTYPTWIN 194 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-C-----------------SCCBCTTCCBCCEETCCEEEEE
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-C-----------------cccccccccccccccceeeEEC
Confidence 444 8899997777766555 699999999876531 0 11 000 0113346764
Q ss_pred CCCEEEEE----------EcCCEEEEEEeeCCcceeeeeeeecccCCE-EEEEEecCCCc---eEEEEEcC---CCeEEE
Q 002196 429 DGTLFGVA----------YSKHIVHLYTYHGGDELRNHLEIEAHVGSV-NDLAFSYPNKQ---LSVVTCGE---DRVIKV 491 (954)
Q Consensus 429 dg~~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~---~~l~s~~~---dg~i~i 491 (954)
++..+++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+. ...+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 273 (711)
T 4hvt_A 195 KDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYI 273 (711)
T ss_dssp TTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEE
T ss_pred CCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEE
Confidence 44444331 112467888775543211 11344333332 34455667663 13454432 245666
Q ss_pred EECCC--CceEEEeccCCCCeEEEeeeccCCccEEEEE----------ecCCeEEEEeCCCCC-------ceeE-eeC-C
Q 002196 492 WDAVT--GTKQYIFEGHESPVYSICPHHKENIQFIFST----------ATDGKIKAWLYDNLG-------SRVD-YDA-P 550 (954)
Q Consensus 492 wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~-------~~~~-~~~-~ 550 (954)
.|... +.. ..+....... +.... ++.+++.. ...+.|...++.+.. .... +.. .
T Consensus 274 ~~~~~~~~~~-~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (711)
T 4hvt_A 274 LDTKYKNLKL-QKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA 348 (711)
T ss_dssp EECSSSSCEE-EECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred EcCCCCCCcc-eEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence 67553 332 2232111111 11122 22344422 245678888887631 1122 222 2
Q ss_pred CCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCe-EEEE-EecCCCCCeEEEEEeCCCC-EEEEEE---CCCeEEE
Q 002196 551 GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRT-YHGLGKRSVGVVQFDTTKN-RFLAAG---DEFMIKF 624 (954)
Q Consensus 551 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~~---~dg~i~i 624 (954)
...+..+.+..+ ..+++... ++...+.++|+.++. .... +.......+......+++. ++++.+ .-+.++.
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred CCeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 336778888865 34444443 345678899887775 2233 3222122565566667665 444443 4467888
Q ss_pred EECC
Q 002196 625 WDMD 628 (954)
Q Consensus 625 wd~~ 628 (954)
+|+.
T Consensus 426 ~d~~ 429 (711)
T 4hvt_A 426 WVKT 429 (711)
T ss_dssp ECTT
T ss_pred EeCC
Confidence 8887
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.65 E-value=38 Score=39.02 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=119.5
Q ss_pred EEE-EccCCCEEEEE-EcC----CEEEEEEeeCCcceeeeeeee-cccC------CEEEEEEecCCCceEEEEE------
Q 002196 423 RVM-WSPDGTLFGVA-YSK----HIVHLYTYHGGDELRNHLEIE-AHVG------SVNDLAFSYPNKQLSVVTC------ 483 (954)
Q Consensus 423 ~l~-~spdg~~l~s~-~~d----g~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~~~~s~~~~~~~l~s~------ 483 (954)
.+. ++||+++++.+ |.. ..++++|+.+++.+... +. .-.. ....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 88999987765 333 36999999998755321 11 0000 123458874433 34432
Q ss_pred ----cCCCeEEEEECCCCc--eEEEeccCCCCe-EEEeeeccCCcc---EEEEEecC---CeEEEEeCCCCCce-eEeeC
Q 002196 484 ----GEDRVIKVWDAVTGT--KQYIFEGHESPV-YSICPHHKENIQ---FIFSTATD---GKIKAWLYDNLGSR-VDYDA 549 (954)
Q Consensus 484 ----~~dg~i~iwd~~~~~--~~~~~~~~~~~v-~~~~~~~~~~~~---~l~s~s~d---g~i~iwd~~~~~~~-~~~~~ 549 (954)
+....|+.|.+-+.. -...+.+....+ .+.....++... .+++.+.+ ..+.+.+.+..... ..+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123578888876542 333454433333 223333333222 34444422 34555565532222 23322
Q ss_pred CCCceEEEEECCCCCEEEEEEeCC------CCceEEEEEeCCCCe--------EEEEEecCCCCCeEEEEEeCCCCEEEE
Q 002196 550 PGHSSTMMAYSADGARLFSCGTNK------EGESYLVEWNESEGA--------VKRTYHGLGKRSVGVVQFDTTKNRFLA 615 (954)
Q Consensus 550 ~~~~v~~~~~s~~g~~l~~~~~~~------~~~~~i~iwd~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~ 615 (954)
.... .+..+.++.+++....+- -..+.|...|+.++. ....+.......+..+.+..+ ..+++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 123344555544332110 013347788876531 122233333446777888765 56666
Q ss_pred EECCC--eEEEEECCCCc-eeEE-EecCCCCCCcceEEECCCCC-EEEEEeC---CCcEEEEEcc
Q 002196 616 AGDEF--MIKFWDMDNVN-LLAS-IDADGGLQASPCIRFNKEGI-LLAVSTN---DNGIKILANA 672 (954)
Q Consensus 616 ~~~dg--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~-~l~s~~~---dg~i~iwd~~ 672 (954)
...++ .|+++++.++. .... +.... ...+.....++++. ++++.+. -+.+..+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66666 46777776664 2333 33322 23455556666654 4444433 2567777765
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.05 E-value=23 Score=35.38 Aligned_cols=221 Identities=14% Similarity=0.088 Sum_probs=109.0
Q ss_pred CCeEEEEEccCCCEEEEEEcCCEEEEEEeeCCcceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCc
Q 002196 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (954)
Q Consensus 419 ~~V~~l~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~ 498 (954)
..|..++.... +.+.-. ||.|..|-......+.. -......|..++...+. .++. . ||.|+.|-....-
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G~~h---s~~l-~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAGNYH---SLAL-K-DGEVIAWGGNEDG 92 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEECSSE---EEEE-E-TTEEEEEECCTTS
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeCCCE---EEEE-E-CCEEEEeeCCCCC
Confidence 35777766543 333335 89999998665333321 01123357777765332 2444 4 8999999755422
Q ss_pred eEEEeccCCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceE
Q 002196 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (954)
Q Consensus 499 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 578 (954)
.+..-..-...|..++... ...+.-. ||.|..|-.......-........|..++...+ +.+... ++ .
T Consensus 93 qlg~P~~~~~~v~~ia~G~----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G----~ 160 (282)
T 3qhy_B 93 QTTVPAEARSGVDAIAAGA----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NG----G 160 (282)
T ss_dssp TTCCCGGGSSSEEEEEEET----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TT----E
T ss_pred CCCCCcccCCCeEEEECcC----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CC----E
Confidence 1111111134577766543 2333344 999999976554332211112234555554332 222222 22 3
Q ss_pred EEEEeCCC-CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECCCCceeEEEecCCCCCCcceEEECCCCCEE
Q 002196 579 LVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (954)
Q Consensus 579 i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (954)
++.|-... +++- ........|..++.... ..++- .||.|+.|-......+.. .. .....|..++..... .+
T Consensus 161 v~~wG~n~~gqlg--~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~-p~-~~~~~v~~i~~G~~h-~~ 232 (282)
T 3qhy_B 161 VIAWGDNYFGQTT--VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV-PT-EALSGVSAIASGEWY-SL 232 (282)
T ss_dssp EEEEECCTTSTTS--CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC-CG-GGGSSCCEEEECSSC-EE
T ss_pred EEEecCCCCCCCC--CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCC-Cc-ccCCCceEEEcCCCE-EE
Confidence 77775433 1110 01111125666666543 33333 599999997654322211 10 112346667665433 33
Q ss_pred EEEeCCCcEEEEEcc
Q 002196 658 AVSTNDNGIKILANA 672 (954)
Q Consensus 658 ~s~~~dg~i~iwd~~ 672 (954)
+. . ||.++.|-..
T Consensus 233 al-~-~g~v~~wG~n 245 (282)
T 3qhy_B 233 AL-K-NGKVIAWGSS 245 (282)
T ss_dssp EE-E-TTEEEEESTT
T ss_pred EE-E-CCEEEEecCC
Confidence 33 3 8999999654
No 359
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=83.99 E-value=0.88 Score=40.22 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhcccccccch
Q 002196 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNE 128 (954)
Q Consensus 67 ~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 128 (954)
++.. ++|.|+-+.||||+..+ .++|..++.+--.-+.....+.+++|..+.....+.+++
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~ 90 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENE 90 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCH
Confidence 3444 99999999999999999 999999997543332222345555665555444444333
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=77.20 E-value=74 Score=33.17 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=89.8
Q ss_pred eEEEEECCCC--ceEEEecc------CCCCeEEEeee-cc----CCccEEEEE-ecCCeEEEEeCCCCCceeEee----C
Q 002196 488 VIKVWDAVTG--TKQYIFEG------HESPVYSICPH-HK----ENIQFIFST-ATDGKIKAWLYDNLGSRVDYD----A 549 (954)
Q Consensus 488 ~i~iwd~~~~--~~~~~~~~------~~~~v~~~~~~-~~----~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~----~ 549 (954)
.|.+||+.++ +.++.+.- ....+..+.+. .. .++.++..+ +..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888888 77776542 13456777776 21 112344444 346779999998766543321 1
Q ss_pred --------C------CCceEEEEECCC----CCEEEEEEeCCCCceEEEEEeCC-----CC---eEEEEEecCC-CCCeE
Q 002196 550 --------P------GHSSTMMAYSAD----GARLFSCGTNKEGESYLVEWNES-----EG---AVKRTYHGLG-KRSVG 602 (954)
Q Consensus 550 --------~------~~~v~~~~~s~~----g~~l~~~~~~~~~~~~i~iwd~~-----~~---~~~~~~~~~~-~~~i~ 602 (954)
. ...+..++++|+ ++.|+.....+. .+|.+. .. ..++.+-... .....
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-----~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-----KVYSVNTKELKQKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-----EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-----cEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence 0 126788999998 788887765432 233222 11 1122221111 11233
Q ss_pred EEEEe-CCCCEEEEEECCCeEEEEECCC-C---ceeEEEecCCCCCCcceEEECCCCCEEEE
Q 002196 603 VVQFD-TTKNRFLAAGDEFMIKFWDMDN-V---NLLASIDADGGLQASPCIRFNKEGILLAV 659 (954)
Q Consensus 603 ~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~s 659 (954)
.+++. .+|..+++--+...|..|+..+ . +....+...........+.+.++|.+.+.
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 45665 4565566666888999999875 1 22233322223334556666555544333
No 361
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.80 E-value=21 Score=36.03 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=64.1
Q ss_pred HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cccccccChHHHHHHH
Q 002196 38 MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD-LKVFSAFNEDLFKEIT 116 (954)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~l~ 116 (954)
+..|++.|.+|+|=||.+.+..+ +.-++..+++++|+.+|.+- +.-+++-+...-..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 57899999999999999865544 44455567777777777654 3333333444445555
Q ss_pred HhhcccccccchhhcccCCChhHHHHHHHHHHhhcccCccccccccCCCCchHHHHHHHHHHHHHHHhhcC
Q 002196 117 QLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCK 187 (954)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~~~~~ 187 (954)
.++.- .....+ .....+.+.+|. +|-+.+|++. | ...+++..+++|-.....
T Consensus 77 ~llve-v~~~~~----~~~~~~~~~rl~-~l~~~~p~~~------------~-~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 77 FYLLE-VYDLAE----VKVDDISVARLV-RLIAELDPSE------------P-NLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp HHHHH-HHHHTT----CCCSHHHHHHHH-HHHTTCCTTC------------T-THHHHHHHHHHHHHHTSS
T ss_pred HHHHH-HHHHcC----CCCCHHHHHHHH-HHHHHCCCCC------------c-hHHHHHHHHHHHHhhcCC
Confidence 44431 111111 111344555555 4444444422 2 357888899999866443
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.86 E-value=1e+02 Score=32.30 Aligned_cols=238 Identities=8% Similarity=0.023 Sum_probs=107.6
Q ss_pred CCCeEEEEEcc-CCCEEEEEEcCC--EEEEEEe-eCCcceeeeee---eec--------ccCCEEEEEEecC--CCceEE
Q 002196 418 TASVNRVMWSP-DGTLFGVAYSKH--IVHLYTY-HGGDELRNHLE---IEA--------HVGSVNDLAFSYP--NKQLSV 480 (954)
Q Consensus 418 ~~~V~~l~~sp-dg~~l~s~~~dg--~i~iwd~-~~~~~~~~~~~---~~~--------h~~~v~~~~~s~~--~~~~~l 480 (954)
...|.+|++.| +...|.+++..| .-.||.. +.++....... +.. ....|.++++.|. ... +
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGT--W 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTC--E
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCE--E
Confidence 35799999999 333444444444 0123333 33433322111 111 1125788999873 332 5
Q ss_pred EEEcCCCeEEEEECCCCceEEEecc-------------------CCCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCC
Q 002196 481 VTCGEDRVIKVWDAVTGTKQYIFEG-------------------HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (954)
Q Consensus 481 ~s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 541 (954)
..++..+.|...+ ..|+.-..+.. ....+.+|.+.+... ..++.+..++.|... ...
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~-~~l~vg~~~ggl~~s--~Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDP-KHLYIGMSSGGVFES--TDA 207 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCT-TCEEEEEETBEEEEE--SST
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCC-CEEEEEECCCCEEEE--CCC
Confidence 5555556665554 33332222211 123577888876433 234445444444333 222
Q ss_pred CceeE-eeC--C-----------CCceEEEEECCC-CCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec-CCC---CCeE
Q 002196 542 GSRVD-YDA--P-----------GHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-LGK---RSVG 602 (954)
Q Consensus 542 ~~~~~-~~~--~-----------~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~---~~i~ 602 (954)
..... ... . ...+.++.++|+ ...++++... -|...+- .++.-..+.. ... ..+.
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-----gl~~s~D-~G~tW~~~~~~l~~~~~~~~~ 281 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-----GIYRMDR-REGVWKRIGDAMPREVGDIGF 281 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-----EEEEEET-TTTEEECGGGGSCTTTCSCEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-----eEEEeCC-CCCcceECCCCCCCCCccceE
Confidence 22211 110 0 124788999986 3566665421 1444432 2322222221 111 2356
Q ss_pred EEEEeCC-CCEEEEEEC-----------CCeEEEEECCC-CceeEEEec--CCCC--C--CcceEEECCC-CCEEEEEeC
Q 002196 603 VVQFDTT-KNRFLAAGD-----------EFMIKFWDMDN-VNLLASIDA--DGGL--Q--ASPCIRFNKE-GILLAVSTN 662 (954)
Q Consensus 603 ~~~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~v~~s~~-~~~l~s~~~ 662 (954)
.+.++|. ...++++.. ++...+|.... |+....+.. .... . ....++++|. ...|+.++.
T Consensus 282 ~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~ 361 (394)
T 3b7f_A 282 PIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTT 361 (394)
T ss_dssp EEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECT
T ss_pred EEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeC
Confidence 6777763 344555432 23344555444 344444421 1100 0 1236888874 344666665
Q ss_pred CCcEE
Q 002196 663 DNGIK 667 (954)
Q Consensus 663 dg~i~ 667 (954)
++.|.
T Consensus 362 ~g~l~ 366 (394)
T 3b7f_A 362 GGEIW 366 (394)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 55543
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.10 E-value=42 Score=40.33 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=32.2
Q ss_pred CeeEEEecCCCCceEEEEecCccEEEEeccccceEEEe
Q 002196 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923 (954)
Q Consensus 886 ~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~ 923 (954)
.+.+++..+ +..++++-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 367778887 7889999999999999999999988765
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.90 E-value=1.3e+02 Score=30.56 Aligned_cols=107 Identities=7% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCCccEEE-ecc--CCCeEEEec-CCeEEEEEcccccEE-------EeeCCCCCCeeEEEecCCCCceEEEEecCccEEE
Q 002196 843 EDAVPCFA-LSK--NDSYVMSAS-GGKISLFNMMTFKTM-------TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI 911 (954)
Q Consensus 843 ~~~v~~~~-~s~--dg~~la~~s-dg~i~iwd~~~~~~~-------~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~i 911 (954)
...|.++. +.. +..+++.++ +|.++--.+...... ..++. .+.+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455443 332 567888887 899999887653321 12332 34455555544 4556777888998887
Q ss_pred Eecc--c---------cceEEEecCCccceeEEEEecCCCeEEEecCCccee
Q 002196 912 YNVR--V---------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 912 wd~~--~---------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
+.+. . |...-.+. ....|.++...+++.+|+.++..|.++
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~K 222 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAK 222 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEE
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEE
Confidence 7766 2 11112233 235577777666777888888888775
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=61.05 E-value=1.3e+02 Score=29.64 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCCccEEEecc-CCCeEEEec-CCeEEEEEccccc------EEEeeCCCCCCeeEEEecCCCCceEEEEecCccEEEEec
Q 002196 843 EDAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFK------TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (954)
Q Consensus 843 ~~~v~~~~~s~-dg~~la~~s-dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~sp~d~~~lasgs~dg~i~iwd~ 914 (954)
...|..+.... +..+++..+ +|.++-..+.... ....++ ..+.+..+.... +...|+..+..|.+..++.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 45565554421 467788887 8999999876543 111232 234455555555 4557778889998888876
Q ss_pred cc---------cceEEEecCCccceeEEEEecCCCeEEEecCCccee
Q 002196 915 RV---------DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQVR 952 (954)
Q Consensus 915 ~~---------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~s~Dg~I~ 952 (954)
.. |.....+.. ...|.++...+++..|+..+..|.++
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~k 190 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVK 190 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEE
T ss_pred hhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 43 222223332 35677766666677888888887764
No 366
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=59.36 E-value=53 Score=33.41 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=61.4
Q ss_pred HHHHHHHHhcccH---HHHHHHHccCCCcCCCccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHh-cccccccChHHHH
Q 002196 38 MRYFEDMVTNGEW---DEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD-LKVFSAFNEDLFK 113 (954)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~-~~~~~~~~~~~~~ 113 (954)
+.+|++.|.+|+| =||.+.+..+ +.-++..+++++|+.+|.+- +.-++.-+...-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV--------------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH--------------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 5889999999999 7877754433 33445567777777777653 3333333444445
Q ss_pred HHHHhhcccccccchhhcccCCChhHHHHHHHHHHhhcccCccccccccCCCCchHHHHHHHHHHHHHHHhhc
Q 002196 114 EITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLC 186 (954)
Q Consensus 114 ~l~~l~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~~~~ 186 (954)
.|+.++.- ...... .......+.+|.+-+ +.++++ .|. ...+|..|++|-....
T Consensus 76 DL~~llve-vy~~~~----~~~~~~~~~rL~~L~-~~~~~~------------~p~-r~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLVD-TFRQAG----QRVDGASRGKLLGCL-RLFQPG------------EPV-RKRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHH-HHHHHT----CCCCHHHHHHHHHHH-TTSCTT------------CHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-HHHHcC----CCCCHHHHHHHHHHH-HhCCCC------------CcH-HHHHHHHHHHHHhhcC
Confidence 55554431 111111 111234555554444 334431 223 4778888888876544
No 367
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=58.80 E-value=1.6e+02 Score=29.86 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=99.0
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCccee-eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC---CC------C
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA---VT------G 497 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~---~~------~ 497 (954)
|+...+++.+.+|.|+--.+..-+... ....+... +.+..+....... .++..+..|.++-... .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 566778899999999877654221100 00123333 3344444444444 3666667777665543 22 2
Q ss_pred ceEE---EeccCCCCeEEEeeecc-CCccEEEEEecCCeEEEEeCCCCCc------eeEeeC-CCCceEEEEECCCCCEE
Q 002196 498 TKQY---IFEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGS------RVDYDA-PGHSSTMMAYSADGARL 566 (954)
Q Consensus 498 ~~~~---~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~s~~g~~l 566 (954)
.++. .+. ....|.++..... .++.+++..+.+|.++...+..... ...+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 2211 122 2334555433222 1236799999999999887653221 111111 22445444444444555
Q ss_pred EEEEeCCCCceEEEEEeCCC-------CeEEEEEecCCCCCeEEEEEeCCCC-EEEEEECCCeEEEEECCC
Q 002196 567 FSCGTNKEGESYLVEWNESE-------GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDN 629 (954)
Q Consensus 567 ~~~~~~~~~~~~i~iwd~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 629 (954)
+..+.++ .+..++... ..-++-+....+..|.++...+++. .+++.+..|..+..++..
T Consensus 159 ~l~T~~G----~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTHNG----YALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEETTS----EEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCC----cEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 5555432 355554421 1112222222333566664444455 788888889888777643
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.05 E-value=3.1e+02 Score=32.73 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=32.5
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
.+.+++..++.. ++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~--~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTT--EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCc--EEEEEECCCEEEEEECCCCCeEeeec
Confidence 567788887777 78999999999999999999988653
No 369
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=56.76 E-value=2.3e+02 Score=31.07 Aligned_cols=180 Identities=12% Similarity=0.094 Sum_probs=92.3
Q ss_pred ccCCEEEEEEecCCCceEEEEEcCCCe----------------------------EEEEECCCCceEEEeccC--CCCe-
Q 002196 462 HVGSVNDLAFSYPNKQLSVVTCGEDRV----------------------------IKVWDAVTGTKQYIFEGH--ESPV- 510 (954)
Q Consensus 462 h~~~v~~~~~s~~~~~~~l~s~~~dg~----------------------------i~iwd~~~~~~~~~~~~~--~~~v- 510 (954)
|...+....|.-||+. -++....+|+ +.++|=.+|+.+.++.-. .+.+
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5556666677777765 4555555554 788888888887765421 1111
Q ss_pred --------------EEEeeeccCCccEEEEEe---cCCeEEEEeCCCCCcee--EeeCC-----------CCceEEEEEC
Q 002196 511 --------------YSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGSRV--DYDAP-----------GHSSTMMAYS 560 (954)
Q Consensus 511 --------------~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~--~~~~~-----------~~~v~~~~~s 560 (954)
.+++.. +++...++.+- ....+..||.+..+... .+... .+.+....+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 122221 11112233322 12247778776554322 22221 1234444455
Q ss_pred CCCCE-EEEEEeCCCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCC--CEEEEEECCC----eEEEEECCCCcee
Q 002196 561 ADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEF----MIKFWDMDNVNLL 633 (954)
Q Consensus 561 ~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~~ 633 (954)
-||+- |+.++ .++| ..|+.+......+...+....|.|+. ..++.+.+++ -..+.|..+|+.+
T Consensus 335 gDG~dEIv~Gs---------~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 335 GDGKDEIIFGS---------MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSSSCEEEETT---------EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCCCceEEEee---------eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 55542 22221 1233 34555554433334367777788874 4677766541 3456899999999
Q ss_pred EEEecCCCCCCcceEEECCC
Q 002196 634 ASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~ 653 (954)
.........+......|.|+
T Consensus 405 w~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEECCSSCCCCEEEECCCTT
T ss_pred EEcCCCCCCCceeEEecCCC
Confidence 88865433333333344454
No 370
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=53.00 E-value=19 Score=30.86 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHHHhhhcChH-HHHHHHHHhcCCCccHHHHHHHHhcccHHHHHHHHccCCCc--CCCccchhHHHHHHH
Q 002196 2 SSLSRELVFLILQFLDEEKFK-ETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKV--DDNRYSMKIFFEIRK 78 (954)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~--~~~~~~~~~~~~i~~ 78 (954)
+....++...|+..|.+.||- .+...+-++.|+..+ .+..|++.++.+... .+.++...++.-+.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 345677889999999999984 556666666665442 335566666666222 233344433333322
Q ss_pred ---------HHHHH-HHhcCCHHH-HHHHHHHhccc
Q 002196 79 ---------QKYLE-ALDKRDRAK-AVEILVKDLKV 103 (954)
Q Consensus 79 ---------~~~~e-ll~~~~~~~-a~~~l~~~~~~ 103 (954)
..+|| +|..+++.. |+.++| .|.|
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P 121 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRL 121 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCS
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCC
Confidence 14566 777666443 555555 4544
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=52.06 E-value=43 Score=36.93 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=43.2
Q ss_pred CCeeEEEecCCCCceEEEEec------------CccEEEEeccccceEEEecCC-ccceeEEEEecCCCeEEEec
Q 002196 885 PAATFLAFHPQDNNIIAIGME------------DSSIQIYNVRVDEVKTKLKGH-QKRITGLAFSNTLNVLVSSG 946 (954)
Q Consensus 885 ~~v~~l~~sp~d~~~lasgs~------------dg~i~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~s 946 (954)
.....|+|++ +|.+.+.... ...|..++..+|++...+.+. ..+++.++||||++.|..+-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3468899999 7877763221 125667777778876666543 36799999999999887653
No 372
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.02 E-value=2.4e+02 Score=29.29 Aligned_cols=174 Identities=9% Similarity=0.137 Sum_probs=89.2
Q ss_pred eEEEEeCCCC--ceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEc---cC----CCEEEEEE-cCCEEEEEEeeC
Q 002196 380 DVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS---PD----GTLFGVAY-SKHIVHLYTYHG 449 (954)
Q Consensus 380 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---pd----g~~l~s~~-~dg~i~iwd~~~ 449 (954)
.|.+||+.++ +.++...+ ...... ....+..+++. |+ +.++..+. ..+-|.|+|+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~------------p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~ 190 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYF------------PTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK 190 (381)
T ss_dssp EEEEEESSSTTCCEEEEEEC------------CGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT
T ss_pred eEEEEECCCCCceeEEEEEC------------CHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC
Confidence 5788888888 77654322 111222 23567888887 22 33444333 356799999998
Q ss_pred Ccceeeee-----------eeecc----cCCEEEEEEecC----CCceEEEEEcCCCeEEEEE---CCCC---ceEEEec
Q 002196 450 GDELRNHL-----------EIEAH----VGSVNDLAFSYP----NKQLSVVTCGEDRVIKVWD---AVTG---TKQYIFE 504 (954)
Q Consensus 450 ~~~~~~~~-----------~~~~h----~~~v~~~~~s~~----~~~~~l~s~~~dg~i~iwd---~~~~---~~~~~~~ 504 (954)
++..+... .+.+. ...|..|+++|+ ++.+ .+..-....++--. ++.. ..+..+
T Consensus 191 ~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~L-Yf~plss~~ly~V~T~~L~~~~~~~~v~~~- 268 (381)
T 3q6k_A 191 QDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPA-YYLAGSAIKVYSVNTKELKQKGGKLNPELL- 268 (381)
T ss_dssp TEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEE-EEEESSCSEEEEEEHHHHSSTTCCCCCEEE-
T ss_pred CcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEE-EEEECCCCcEEEEEHHHhhCcchhhceEEe-
Confidence 87654221 00111 246888999988 5643 23332222332222 1111 112212
Q ss_pred cCCC---CeEEEeeeccCCccEEEEEecCCeEEEEeCCC-C----CceeE-eeCCCCceEEEEECCCCCEEEEE
Q 002196 505 GHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDN-L----GSRVD-YDAPGHSSTMMAYSADGARLFSC 569 (954)
Q Consensus 505 ~~~~---~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~----~~~~~-~~~~~~~v~~~~~s~~g~~l~~~ 569 (954)
+..+ .-..+++.+ .+|.++++--....|..|+..+ . ..... ....-..+..+.+.++|.+.+..
T Consensus 269 G~kg~~s~~~~~~~D~-~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDP-KTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECCTTCCEEEEEECT-TTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eecCCCCCcceEEEeC-CCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 1121 222233321 3456777777788899999875 1 11111 22222256777777777544443
No 373
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=49.85 E-value=13 Score=29.12 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHHHHHH
Q 002196 166 LKNSRLRTLINQSLNWQH 183 (954)
Q Consensus 166 ~p~~rL~~ll~~~~~~q~ 183 (954)
|||..|.+||+++|.|-.
T Consensus 44 VppgaLVsllQKGL~Y~~ 61 (90)
T 2xtc_A 44 VPPAALISILQKGLQYVE 61 (90)
T ss_dssp SCTTHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHH
Confidence 899999999999999963
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=49.43 E-value=39 Score=37.71 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=42.9
Q ss_pred CccEEEeccCCCeEEEec-C------------CeEEEEEcccccEEEeeCCCC-CCeeEEEecCCCCceEEEE
Q 002196 845 AVPCFALSKNDSYVMSAS-G------------GKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIG 903 (954)
Q Consensus 845 ~v~~~~~s~dg~~la~~s-d------------g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~d~~~lasg 903 (954)
..-.|+|+|+|.++++-. + +.+.+.+..+++..+-+.++. ..++.++|+| |++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 445789999999666543 2 236667777888888777765 4599999999 88777665
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.02 E-value=61 Score=36.16 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=47.5
Q ss_pred ceEEEEECCCCCEEEEEEeCC--------CCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEE
Q 002196 553 SSTMMAYSADGARLFSCGTNK--------EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA 616 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 616 (954)
..-.|+|+|.|+++++--.+. .+...+.+.+..+++..+.+.+..+..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 446789999998555432111 1345677888888998888888877789999999999887765
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=45.88 E-value=2.4e+02 Score=28.19 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=94.9
Q ss_pred cCCCEEEEEEcCCEEEEEEeeCCcceee------eeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE---CCC--
Q 002196 428 PDGTLFGVAYSKHIVHLYTYHGGDELRN------HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD---AVT-- 496 (954)
Q Consensus 428 pdg~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd---~~~-- 496 (954)
|+...+++.+.+|.|+--.+..-+..+. ...+..+ +.+..+....... .++..+..|.++-+. +..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 4566788899999998776654221110 0012222 2333333333444 356666677765554 322
Q ss_pred ----CceEE---EeccCCCCeEEEeeec-cCCccEEEEEecCCeEEEEeCCCCCc-----eeEeeC-CCCceEEEEECCC
Q 002196 497 ----GTKQY---IFEGHESPVYSICPHH-KENIQFIFSTATDGKIKAWLYDNLGS-----RVDYDA-PGHSSTMMAYSAD 562 (954)
Q Consensus 497 ----~~~~~---~~~~~~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~-~~~~v~~~~~s~~ 562 (954)
|..+. .+. ....|.++.... ..++.+++..+.+|.++...+..... ...+.. .+..+..+.....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 22211 122 234465554322 12336799999999999887653221 111111 2244444444444
Q ss_pred CCEEEEEEeCCCCceEEEEEeCCC-------CeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 563 GARLFSCGTNKEGESYLVEWNESE-------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 563 g~~l~~~~~~~~~~~~i~iwd~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
...++..+..+ .+..++... ..-+.-+....+..|.++....++..+++.+..|.++-.++.
T Consensus 157 ~~~i~l~T~~G----~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 157 EDEVMLFSAEG----KVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TCEEEEEETTS----EEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCEEEEECCCC----cEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 44555555422 355554421 111122222233356666554556678889999998888763
No 377
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=45.75 E-value=84 Score=26.23 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=48.0
Q ss_pred HHhhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHHHHHHhcC
Q 002196 14 QFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKR 88 (954)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~ 88 (954)
.+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+......+... .. .+-..=.-+...+
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~--a~~~lg~~~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----IK--GYIRKAACLVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH--HHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----hH--HHHHHHHHHHHCC
Confidence 345555577777766664333222 111223345678888877776552221111 11 1111222234567
Q ss_pred CHHHHHHHHHHhcccccccChHHHHHHHHh
Q 002196 89 DRAKAVEILVKDLKVFSAFNEDLFKEITQL 118 (954)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (954)
+.++|+..+++.+.- .+.+++-...|..+
T Consensus 96 ~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 96 EWSKAQRAYEDALQV-DPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CcCCHHHHHHHHHh
Confidence 788888877765442 22344444444443
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.64 E-value=95 Score=34.23 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=46.7
Q ss_pred ceEEEEECCCCCEEEEEEeC--------CCCceEEEEEeCCCCeEEEEEecCCCCCeEEEEEeCCCCEEEEEE
Q 002196 553 SSTMMAYSADGARLFSCGTN--------KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (954)
Q Consensus 553 ~v~~~~~s~~g~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 617 (954)
....+.|+++|.+.+..-.. +.+...+..++..+++....+.......++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56789999999877643211 112336888898888887777655444789999999998887764
No 379
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=43.17 E-value=3.8e+02 Score=29.59 Aligned_cols=69 Identities=9% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCCeEEEEEecCCCCCeEEEEEeCC--CCEEEEEECC----CeEEEEECCCCceeEEEecCCCCCCcceEEECCC
Q 002196 585 SEGAVKRTYHGLGKRSVGVVQFDTT--KNRFLAAGDE----FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (954)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (954)
..|+.+......+...+....|.|+ |..++.+.++ .-..+.|..+|+.+.......+.+......|.|+
T Consensus 354 ~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 354 HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPS 428 (620)
T ss_dssp TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTT
T ss_pred CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCC
Confidence 3455555443333435666677777 3455555554 2467789999999988865444444444445554
No 380
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.96 E-value=1e+02 Score=30.55 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHhhhcC-hHHHHHHHHH--hcCCCc-c--H--HHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHH
Q 002196 4 LSRELVFLILQFLDEEK-FKETVHKLEQ--DSGFFF-N--M--RYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFE 75 (954)
Q Consensus 4 ~~~e~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~--~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (954)
..-+.++++.+++...| +.++...|++ +.++.. + . ..=.-....|++++|+..+.+ +... .+.+.
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~---~~~~~ 135 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL---ECMAM 135 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH---HHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH---HHHHH
Confidence 34566778888888887 7777777776 333322 2 1 111334577899999888887 1110 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002196 76 IRKQKYLEALDKRDRAKAVEILVKDL 101 (954)
Q Consensus 76 i~~~~~~ell~~~~~~~a~~~l~~~~ 101 (954)
.-+ =++..++.++|...+++.+
T Consensus 136 -l~~---~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 136 -TVQ---ILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -HHH---HHHHTTCHHHHHHHHHHHH
T ss_pred -HHH---HHHHCCCHHHHHHHHHHHH
Confidence 111 2345677777777777643
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=42.47 E-value=4.6e+02 Score=30.43 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=75.9
Q ss_pred CCCeeEEEEcCCCCeEEEEEEcCCeEEEEeCCCCceeeeeeeEEEeccCCCccccccccCCCCCCeEEEEEccC-CCEEE
Q 002196 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFG 434 (954)
Q Consensus 356 ~~~V~~~~~sp~g~~ll~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~ 434 (954)
.+.|.+++++|.....+.+++..+.|...+= .|+. |...... ... -.-....|.+|++.|. .+.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~t--------W~~~~~~--~~~--~~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSK--------WIPLNDF--IEA--QDMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTE--------EEESCTT--CCG--GGGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCC--------eeECccC--CCc--ccccCCceeEEEECCCCCCEEE
Confidence 4689999999976556677777776655542 2321 2110000 000 0002357999999984 34444
Q ss_pred EEEcCCE----EEEEEe-eCCcceeeeee-ee--c---ccCCEEEEEEecCCCceEEEEEcCCCeEEEEEC-CCCceEEE
Q 002196 435 VAYSKHI----VHLYTY-HGGDELRNHLE-IE--A---HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VTGTKQYI 502 (954)
Q Consensus 435 s~~~dg~----i~iwd~-~~~~~~~~~~~-~~--~---h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~ 502 (954)
.+..+.. -.||.- +.|+....... +. + ....+..+++.|.... .++.+...+.| |-. +.|+--..
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~gl--~~S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEGI--WKSSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSCE--EEESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCCE--EEECCCCcccCC
Confidence 4443211 234433 34443332211 00 0 0113567888886544 35556544433 322 22332222
Q ss_pred ecc------CCCCeEEEeeeccCCccEEEEEecC
Q 002196 503 FEG------HESPVYSICPHHKENIQFIFSTATD 530 (954)
Q Consensus 503 ~~~------~~~~v~~~~~~~~~~~~~l~s~s~d 530 (954)
+.. ....+..+.++|... ..++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 221 124577788877544 345555544
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.43 E-value=75 Score=39.16 Aligned_cols=37 Identities=8% Similarity=0.235 Sum_probs=31.2
Q ss_pred eeEEEecCCCCceEEEEecCccEEEEeccccceEEEec
Q 002196 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (954)
Q Consensus 887 v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~ 924 (954)
+.+++..+ +..++++-+.|+++|||++.+++++.+..
T Consensus 240 ~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566667 78899999999999999999999887653
No 383
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=42.31 E-value=81 Score=26.36 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=51.2
Q ss_pred HhhhcChHHHHHHHHHhcCCCcc-HH----HHHHHHhcccHHHHHHHHccCC-CcCCCccchhHHHHHHHHHHHHHHhcC
Q 002196 15 FLDEEKFKETVHKLEQDSGFFFN-MR----YFEDMVTNGEWDEVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKR 88 (954)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~ell~~~ 88 (954)
+.+..-|.++...+++=-.+..+ .. .=.-....|+|++|+..+...- ..+........+-.++-..=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44555577777777664333332 11 1123456788888888776541 111111000011122222222344568
Q ss_pred CHHHHHHHHHHhcccccccChHHHHHHHH
Q 002196 89 DRAKAVEILVKDLKVFSAFNEDLFKEITQ 117 (954)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (954)
+..+|+..+++.|.- ..+++....|..
T Consensus 98 ~~~~A~~~~~kal~~--~~~~~~~~~l~~ 124 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSE--FRDPELVKKVKE 124 (127)
T ss_dssp CHHHHHHHHHHHHHH--SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcCHHHHHHHHH
Confidence 888898888876652 125665555543
No 384
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=40.66 E-value=2e+02 Score=28.39 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=5.7
Q ss_pred ccHHHHHHHHcc
Q 002196 48 GEWDEVEKYLSG 59 (954)
Q Consensus 48 g~w~~~~~~l~~ 59 (954)
|++++|+..+..
T Consensus 79 ~~~~~A~~~l~~ 90 (291)
T 3mkr_A 79 SRRDAIVAELDR 90 (291)
T ss_dssp TTHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 445555544444
No 385
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=40.48 E-value=3e+02 Score=27.78 Aligned_cols=191 Identities=8% Similarity=0.025 Sum_probs=98.0
Q ss_pred CCEEEEEEcCCEEEEEEeeCCccee------eeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEE---ECCC----
Q 002196 430 GTLFGVAYSKHIVHLYTYHGGDELR------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW---DAVT---- 496 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iw---d~~~---- 496 (954)
...+++.+.+|.|+--.+.+-+..+ ....+. ....+..+....... .++.-+..|.++-. ++..
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d--~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHD--LILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCC--EEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 3467778889988876643211100 000122 233454444444444 35555566665544 4432
Q ss_pred --CceEEE---eccCCCCeEEEeeecc-CCccEEEEEecCCeEEEEeCCCCCce-----eEeeC-CCCceEEEEECCCCC
Q 002196 497 --GTKQYI---FEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDNLGSR-----VDYDA-PGHSSTMMAYSADGA 564 (954)
Q Consensus 497 --~~~~~~---~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~-~~~~v~~~~~s~~g~ 564 (954)
|..+.. +. ....|.++..... .+..++++.+.+|.++.-.+...... ..+.. .+..+..+.......
T Consensus 80 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d 158 (327)
T 3uc1_A 80 ARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGD 158 (327)
T ss_dssp SCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTC
T ss_pred CCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCC
Confidence 222211 22 2344555543322 23479999999999998876543221 11111 233455554444455
Q ss_pred EEEEEEeCCCCceEEEEEeCC--C----C---eEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 565 RLFSCGTNKEGESYLVEWNES--E----G---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 565 ~l~~~~~~~~~~~~i~iwd~~--~----~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
.++..+..+ .+..+... . + .=+..+.-..+..|.++...+++..++..+..|.++.-.+.
T Consensus 159 ~ill~T~~G----~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 159 DLLLVSANG----QSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEEETTS----EEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEECCC----eEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 666655432 35555444 1 1 11111222233356666665666789999999999887754
No 386
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=40.46 E-value=25 Score=27.01 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHhcCCC
Q 002196 7 ELVFLILQFLDEEKFKETVHKLEQDSGFF 35 (954)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (954)
-+.-||-.||.=+||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999986
No 387
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=38.89 E-value=3.5e+02 Score=27.99 Aligned_cols=215 Identities=9% Similarity=-0.006 Sum_probs=97.6
Q ss_pred CCEEEEEEcCCEEEEEEeeC-CcceeeeeeeecccCCEEEEEEec--CCCceEEEEEcCCC----eEEEEECCCCceEEE
Q 002196 430 GTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDR----VIKVWDAVTGTKQYI 502 (954)
Q Consensus 430 g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 502 (954)
...|.+|+..| +.+++... +........ ......|.+|++.| ++. +..++..+ .|...+ ..|+.-..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~---l~~g~~~g~~g~gl~~s~-D~G~tW~~ 95 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPER---MLMAARTGHLGPTVFRSD-DGGGNWTE 95 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTC---EEEEEEC--CCEEEEEES-STTSCCEE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCe---EEEEecCCCCCccEEEeC-CCCCCceE
Confidence 34667777777 55555432 333332111 12235699999998 343 44444444 444432 33332222
Q ss_pred ecc--------------CCCCeEEEeeeccC-CccEEEEEecCCeEEEEeCCCCCceeE-ee------------------
Q 002196 503 FEG--------------HESPVYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRVD-YD------------------ 548 (954)
Q Consensus 503 ~~~--------------~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~------------------ 548 (954)
+.. ....|.++++.+.. + ..++.++..+.|... ........ ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~~l~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g 172 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEP-GTWYAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDG 172 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTST-TCEEEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC---
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCC-CEEEEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccC
Confidence 211 11246778877632 3 345666555655443 22222111 11
Q ss_pred -CCCCceEEEEECCC-CCEEEEEEeCCCCceEEEEEeCCCCeEEEEEec-CC-----------CCCeEEEEEeCC-CCEE
Q 002196 549 -APGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-LG-----------KRSVGVVQFDTT-KNRF 613 (954)
Q Consensus 549 -~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~-----------~~~i~~~~~~~~-~~~l 613 (954)
.....+.++.++|. ...++++...+ -+...+ ..++.-..+.. .. ...+..+.+.|. ...+
T Consensus 173 ~~~~~~i~~i~~d~~~~~~l~vg~~~g----gl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l 247 (394)
T 3b7f_A 173 TPDGPKMHSILVDPRDPKHLYIGMSSG----GVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL 247 (394)
T ss_dssp -CCCCEEEEEEECTTCTTCEEEEEETB----EEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred CCCCCceeEEEECCCCCCEEEEEECCC----CEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence 11235778999873 34455554321 143332 22221111111 00 124788888886 3567
Q ss_pred EEEECCCeEEEEECCCCceeEEEecCCCC---CCcceEEECC-CCCEEEEE
Q 002196 614 LAAGDEFMIKFWDMDNVNLLASIDADGGL---QASPCIRFNK-EGILLAVS 660 (954)
Q Consensus 614 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~-~~~~l~s~ 660 (954)
+++...+ |+..+- .++....+...... ..+.+++++| +...|..+
T Consensus 248 ~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 248 YQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 7776554 444432 23333333211101 2345677776 33334444
No 388
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=38.04 E-value=19 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHHhhhc
Q 002196 1 MSSLSRELVFLILQFLDEE 19 (954)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~ 19 (954)
|...+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778999999999999763
No 389
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.62 E-value=1e+02 Score=38.05 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.4
Q ss_pred CEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEec
Q 002196 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (954)
Q Consensus 465 ~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 504 (954)
.+.+++..++.. ++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455666777777 78999999999999999999988754
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.51 E-value=45 Score=37.91 Aligned_cols=36 Identities=6% Similarity=0.185 Sum_probs=29.1
Q ss_pred CeeEEEecCCCCceEEEEecCccEEEEeccccceEEEec
Q 002196 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (954)
Q Consensus 886 ~v~~l~~sp~d~~~lasgs~dg~i~iwd~~~~~~~~~~~ 924 (954)
.|.++.+ +..+|++-+.|+++|+|++.+++++.+..
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3555554 45799999999999999999999887654
No 391
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.19 E-value=2.2e+02 Score=32.42 Aligned_cols=30 Identities=17% Similarity=0.471 Sum_probs=27.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCceeEEEec
Q 002196 609 TKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (954)
Q Consensus 609 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (954)
+..++++-+.|.++|+|++.+++++.+...
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 478999999999999999999999988876
No 392
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=32.18 E-value=7.3 Score=31.85 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCccHHHHHHHHhcccHHHHHHHHccC
Q 002196 25 VHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60 (954)
Q Consensus 25 ~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (954)
+..+-+|||++.++..+-..| +|+||+++..++..
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 344456899999877776666 49999999877654
No 393
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=32.08 E-value=26 Score=19.61 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHhhh
Q 002196 5 SRELVFLILQFLDE 18 (954)
Q Consensus 5 ~~e~~~li~q~L~~ 18 (954)
=+||++||-||-..
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 47889998888654
No 394
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=29.70 E-value=2.2e+02 Score=22.95 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHH
Q 002196 7 ELVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (954)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (954)
....+-..++...-|.++...+++=.....+ ...-.-....|+|++|+..+.......... ..+.+. .-
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~----la 91 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTR----KA 91 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHH----HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHH----HH
Confidence 3445555566666688888888776555443 122223456789999888877652221111 011111 11
Q ss_pred HHHHhcCCHHHHHHHHHHhcc
Q 002196 82 LEALDKRDRAKAVEILVKDLK 102 (954)
Q Consensus 82 ~ell~~~~~~~a~~~l~~~~~ 102 (954)
.-+...++..+|+..+++.+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 123456888888888886544
No 395
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=27.47 E-value=35 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHhhhcChH-HHHHHHHHhcCCCc
Q 002196 2 SSLSRELVFLILQFLDEEKFK-ETVHKLEQDSGFFF 36 (954)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~-~s~~~L~~Esg~~~ 36 (954)
+.....+...|+..|.+.||- .+...+-++.|+..
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~ 62 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV 62 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH
Confidence 445678999999999999984 45566666666654
No 396
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.44 E-value=1.8e+02 Score=25.20 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=10.2
Q ss_pred HHhcccHHHHHHHHccC
Q 002196 44 MVTNGEWDEVEKYLSGF 60 (954)
Q Consensus 44 ~i~~g~w~~~~~~l~~~ 60 (954)
....|+|++|+..+...
T Consensus 46 ~~~~g~~~eA~~~~~~a 62 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFL 62 (151)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 34456666666666555
No 397
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=27.28 E-value=4.8e+02 Score=26.04 Aligned_cols=254 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred CccEEEEEecCCeEEEEeCCCC--------CceeEeeCCCCceEEEEECCCCCEEEEEEeCCCCceEEEEEeCCCCeEEE
Q 002196 520 NIQFIFSTATDGKIKAWLYDNL--------GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (954)
Q Consensus 520 ~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 591 (954)
+..++++.+.+|.|+--.+... .........+..+..+........++..+..|. -..+..+++.......
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~-~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGK-LYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSE-EEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCe-EEEEEHHHCCCCCccC
Q ss_pred -------EEecCCCCCeEEEEEeC---CCCEEEEEECCCeEEEEECCCC-----ceeEEEecCCCCCCcceEEECCCCCE
Q 002196 592 -------TYHGLGKRSVGVVQFDT---TKNRFLAAGDEFMIKFWDMDNV-----NLLASIDADGGLQASPCIRFNKEGIL 656 (954)
Q Consensus 592 -------~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s~~~~~ 656 (954)
.+....+..+..+...+ +..+++..+..|.++...+... .-+..+.... ...+..+....+...
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Q ss_pred EEEEeCCCcEEEEEccCCCeeEEEeccccccceecchhccccCCccccccCCCCCccccccccccccccccccCCCCCCC
Q 002196 657 LAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNF 736 (954)
Q Consensus 657 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (954)
++..+.+|.+..+... ++...+...
T Consensus 165 i~l~T~~G~~~r~~~~----------------------------ev~~~gR~~--------------------------- 189 (312)
T 1suu_A 165 VICLSKKGSAFIFNSR----------------------------DVRLTNRGT--------------------------- 189 (312)
T ss_dssp EEEEETTSEEEEEEGG----------------------------GSCBCCTTB---------------------------
T ss_pred EEEEeCCCcEEEEEHH----------------------------HccccCCCC---------------------------
Q ss_pred CCCcccccccccccccccccccccCCCceeEEecCCCCCccceEEEEEecCCceEEEeecCCeEEEeeccCCCCCCCCcc
Q 002196 737 TDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA 816 (954)
Q Consensus 737 ~~~~~lvs~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~dg~v~lw~~~~~~~~~~g~~ 816 (954)
.-++..++. ....|.++..-.++..+++.+..|..+...+.
T Consensus 190 ------------~Gv~~i~L~-----------------~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~---------- 230 (312)
T 1suu_A 190 ------------QGVCGMKLK-----------------EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS---------- 230 (312)
T ss_dssp ------------CCEECCCCC-----------------TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG----------
T ss_pred ------------CCeEeEEeC-----------------CCCEEEEEEEECCCCeEEEEECCCceEEEEHH----------
Q ss_pred cCCCCccccCCCCcccccccCCCCCCCCCccEEEeccCCCeEEEecCCeEEEEEccc
Q 002196 817 TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMT 873 (954)
Q Consensus 817 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~sdg~i~iwd~~~ 873 (954)
.+++-...+.-.....+.......-+....+.++...++....|.+.-.....
T Consensus 231 ----e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 231 ----KISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp ----GSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred ----HhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
No 398
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.11 E-value=3e+02 Score=26.87 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=56.2
Q ss_pred HHHHHHhhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHHHHH
Q 002196 10 FLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (954)
Q Consensus 10 ~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~el 84 (954)
.+-..++....+.++...+++=.....+ ...-+-.+..|++++|+..+.++...... . ....-..-+++
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-----~-~~~~~~~~~~l 195 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-----T-RYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-----H-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-----h-HHHHHHHHHHH
Confidence 3334445555577777666654433332 22334456789999999988887332211 1 11222333445
Q ss_pred HhcCCHHHHHHHHHHhcccccccChHHHHHHHHhhc
Q 002196 85 LDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120 (954)
Q Consensus 85 l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~~ 120 (954)
...++..+|+..|++.+.- ...+++-...|..++.
T Consensus 196 ~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLH 230 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHH
Confidence 5566667777777765442 2234555556665544
No 399
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=26.32 E-value=4.6e+02 Score=25.57 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=65.3
Q ss_pred CCCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCC----ceeEeeC-CCCceEEEEECCCCCEEEEEEeCCCCceEEEE
Q 002196 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG----SRVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (954)
Q Consensus 507 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 581 (954)
...|..+.. .+-+..+++..+.+|.++...+.... ....+.. .+..+..+........++..+..+ .+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G----~~~r 141 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKG----RVAR 141 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTS----EEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCC----EEEE
Confidence 445555533 22033689999999999998876542 1111111 234555555555555666665432 3555
Q ss_pred EeCC---------CCeEEEEEecCCCCCeEEEEEeCCCCEEEEEECCCeEEEEECC
Q 002196 582 WNES---------EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (954)
Q Consensus 582 wd~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 628 (954)
++.. .|... +.-..+..+..+...+++..++..+..|.++...+.
T Consensus 142 ~~~~eip~~gR~a~Gv~~--i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 142 FSVREVPPSTPGARGVQG--IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHE 195 (276)
T ss_dssp EEGGGSCBCCTTCCCEEC--CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGG
T ss_pred EEhhhCCCcCCCCCCEEE--EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHH
Confidence 5432 12222 222223356666555667789999999999888764
No 400
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=25.85 E-value=3.7e+02 Score=24.69 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccC-CCcCCCccchhHHHHHHHHHH
Q 002196 8 LVFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKY 81 (954)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~ 81 (954)
...+-..++....|.++...+++-.....+ ...=.-....|++++|+..+.+. ...|+.. . ..+ .+-..+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~-a~~-~lg~~~ 83 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--G-GYM-VLSEAY 83 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHH-HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H-HHH-HHHHHH
Confidence 344555566666788888888887666554 12223345689999999988776 2222221 1 111 112222
Q ss_pred HHH--------HhcCCHHHHHHHHHHhcccccccChHHHHHHHHhh
Q 002196 82 LEA--------LDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLL 119 (954)
Q Consensus 82 ~el--------l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l~ 119 (954)
+++ +..++.++|+..+++.+.- ...+++-+..|..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 222 1227788888888876442 222444444444443
No 401
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.13 E-value=5.8e+02 Score=26.25 Aligned_cols=109 Identities=8% Similarity=0.063 Sum_probs=61.9
Q ss_pred ccCCCEEEEEEcCCEEEEEEeeCCc-------ceeeeeeeecccCCEEEEEEecCCCceEEEEEcCCCeEEEEE---CCC
Q 002196 427 SPDGTLFGVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD---AVT 496 (954)
Q Consensus 427 spdg~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd---~~~ 496 (954)
-|+..++++.+.+|.|+--.+..-. -.. ...+. ....+..+....... .++..+..|.++-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~-~~~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRS-AASTK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSE-EEECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCce-ecccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 3677889999999999977654311 111 11222 234555555555555 356666677666554 322
Q ss_pred ------CceEE---EeccCCCCeEEEeeecc-CCccEEEEEecCCeEEEEeCCC
Q 002196 497 ------GTKQY---IFEGHESPVYSICPHHK-ENIQFIFSTATDGKIKAWLYDN 540 (954)
Q Consensus 497 ------~~~~~---~~~~~~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~ 540 (954)
|..+. .+. ....|.++..... .++.+++.++..|.++...+..
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 22221 122 2345655543321 2336899999999999887653
No 402
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=23.84 E-value=1e+02 Score=24.09 Aligned_cols=84 Identities=10% Similarity=0.034 Sum_probs=38.8
Q ss_pred HhhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccCCCcCCCccchhHHHHHHHHHHHHHHhc-C
Q 002196 15 FLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK-R 88 (954)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~-~ 88 (954)
++....|.++...+++=.....+ ...=.-....|+|++|+..+.+.......... ..++...-.=+... +
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYIEG 91 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC----HHHHHHHHHHHTTCSS
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch----HHHHHHHHHHHHHHhC
Confidence 34444466666655543222211 11122234567888887777655221111000 11111222223456 7
Q ss_pred CHHHHHHHHHHhcc
Q 002196 89 DRAKAVEILVKDLK 102 (954)
Q Consensus 89 ~~~~a~~~l~~~~~ 102 (954)
+..+|+..+++.+.
T Consensus 92 ~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 92 KEVEAEIAEARAKL 105 (112)
T ss_dssp CSHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777775543
No 403
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=23.42 E-value=2.5e+02 Score=24.35 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=9.5
Q ss_pred HhcCCHHHHHHHHHHhc
Q 002196 85 LDKRDRAKAVEILVKDL 101 (954)
Q Consensus 85 l~~~~~~~a~~~l~~~~ 101 (954)
+..++.++|+..+++.+
T Consensus 115 ~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34566666666665543
No 404
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.16 E-value=3.7e+02 Score=26.16 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhcChHHHHHHHHHhcCCCcc---H----HH----HHHHHhcccHHHHHHHHccC-CCcCCCccchhHHH
Q 002196 7 ELVFLILQFLDEEKFKETVHKLEQDSGFFFN---M----RY----FEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFF 74 (954)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~----~~----~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (954)
++...+..++....|.++...+++.-..... . .. -.-....|++++|+.++.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 4456677788888899998887755433221 0 00 01124568999999887653 2111111111 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 002196 75 EIRKQKYLEALDKRDRAKAVEILVKDLK 102 (954)
Q Consensus 75 ~i~~~~~~ell~~~~~~~a~~~l~~~~~ 102 (954)
.++-..-.-+...++.++|+..+.+.+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666778999999999988763
No 405
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=23.08 E-value=2.9e+02 Score=22.02 Aligned_cols=94 Identities=10% Similarity=0.087 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccCCCc-CCCccchhHHHHHHHHHHH
Q 002196 9 VFLILQFLDEEKFKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (954)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~ 82 (954)
..+-..++...-|.++...+++=.....+ ...-.-....|+|++|+..+...... +...........++-..-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33444555555677777777664433222 12223345679999999888765211 1110000011222222223
Q ss_pred HHHhcCCHHHHHHHHHHhcc
Q 002196 83 EALDKRDRAKAVEILVKDLK 102 (954)
Q Consensus 83 ell~~~~~~~a~~~l~~~~~ 102 (954)
-+...++..+|+..+++.+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 34567899999999887654
No 406
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=22.79 E-value=3.5e+02 Score=22.96 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccC-CCcCCCccchhHHHHHHHHHHHHHHhcCCHHHHH
Q 002196 21 FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAV 94 (954)
Q Consensus 21 ~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~ 94 (954)
+.++...+++-.....+ +..=+-....|+|++|+..+.+. ...|++. -.+. ..-.-+...++.++|+
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~---~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHR---FLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH---HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH---HHHHHHHHcCchHHHH
Confidence 45555666665444332 11112345679999999988876 2222221 1111 1222234579999999
Q ss_pred HHHHHhcccccccChHHHHHHHHhhcc
Q 002196 95 EILVKDLKVFSAFNEDLFKEITQLLTL 121 (954)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~l~~l~~~ 121 (954)
..+++.+.- ...+++-+..|..++..
T Consensus 86 ~~~~~al~~-~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 86 ECYRRSVEL-NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 999986552 33466777778776543
No 407
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=22.62 E-value=9.3e+02 Score=27.79 Aligned_cols=149 Identities=9% Similarity=0.098 Sum_probs=71.9
Q ss_pred CCCeEEEEEccC-CCEEEEEEcCCEEEEEEeeCCcceeeeeeeec----ccCCEEEEEEecCCCceEEEEEcC-C--CeE
Q 002196 418 TASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA----HVGSVNDLAFSYPNKQLSVVTCGE-D--RVI 489 (954)
Q Consensus 418 ~~~V~~l~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~~~l~s~~~-d--g~i 489 (954)
...|.+|+++|. ...+.+++..+.|...+ +.|+.......... ....|.++++.|.....+++..+. . ..-
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 45666676666543332 33443332111011 134699999998654323333332 2 002
Q ss_pred EEEE-CCCCceEEEeccC-------C--CCeEEEeeeccCCccEEEEEecCCeEEEEeCCCCCceeE-ee------CCCC
Q 002196 490 KVWD-AVTGTKQYIFEGH-------E--SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YD------APGH 552 (954)
Q Consensus 490 ~iwd-~~~~~~~~~~~~~-------~--~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~------~~~~ 552 (954)
.||- .+.|+--..+... . ..+..++++|... ..++.+...+.| |--........ .. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~-~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS-NEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE-EEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC-CEEEEEeccCCE--EEECCCCcccCCCccCccccCCCC
Confidence 3332 2334322222110 1 1245677776543 456666544433 33333222211 11 1124
Q ss_pred ceEEEEECCC-CCEEEEEE
Q 002196 553 SSTMMAYSAD-GARLFSCG 570 (954)
Q Consensus 553 ~v~~~~~s~~-g~~l~~~~ 570 (954)
.+..+.++|. +..++++.
T Consensus 170 ~~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASA 188 (789)
T ss_dssp CEEEEEECTTSTTCEEEEE
T ss_pred CeEEEEECCCCCCEEEEEE
Confidence 5788888884 44565554
No 408
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=22.24 E-value=2.7e+02 Score=29.47 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHhcCCCc-----c---H-----HHHHHHHhcccHHHHHHHHccCC-----CcCCCc
Q 002196 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFF-----N---M-----RYFEDMVTNGEWDEVEKYLSGFT-----KVDDNR 67 (954)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~-----~---~-----~~~~~~i~~g~w~~~~~~l~~~~-----~~~~~~ 67 (954)
+++++.|.++-...-|.++...+++--.+.. + + ....-....|+|++|+.+..+.- ..+. .
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~ 366 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-S 366 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-S
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-C
Confidence 4566666666555567666665554433322 1 1 11223445789998888776540 0111 1
Q ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccccc
Q 002196 68 YSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFS 105 (954)
Q Consensus 68 ~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~ 105 (954)
.+. +...++..-. -+..+|++++|+.++++.+.-+.
T Consensus 367 Hp~-~a~~l~nLa~-~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 367 HPV-RGVQVMKVGK-LQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp CHH-HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChH-HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHH
Confidence 111 2222222221 23447888888888777655443
No 409
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=22.07 E-value=12 Score=30.50 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=24.5
Q ss_pred HHHHhcCCCccHHHHHHHHhcccHHHHHHHHccC
Q 002196 27 KLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60 (954)
Q Consensus 27 ~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (954)
.+-+|||++..+..+-..|. |+||+++..++..
T Consensus 27 ~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 59 (104)
T 2ibo_A 27 AYLQTQEVTMVVTPFETVLE-GEFDELMRILKEA 59 (104)
T ss_dssp HHHHHSSSEEEECSSCEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 34458999988777766664 9999998876644
No 410
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=22.04 E-value=12 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCccHHHHHHHHhcccHHHHHHHHccC
Q 002196 24 TVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60 (954)
Q Consensus 24 s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (954)
.+..+-+|||++..+..+-..| +|+||+++..++..
T Consensus 28 ~~i~~i~~sGl~y~~~pm~T~I-EGe~devm~vv~~~ 63 (104)
T 1lxj_A 28 LIEKKIRESPLKSTLHSAGTTI-EGPWDDVMGLIGEI 63 (104)
T ss_dssp HHHHHHHTSSSEEEEETTEEEE-EEEHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 3444556899988877776666 49999998876543
No 411
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=21.86 E-value=46 Score=22.97 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhhc
Q 002196 5 SRELVFLILQFLDEE 19 (954)
Q Consensus 5 ~~e~~~li~q~L~~~ 19 (954)
+++++..|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 578899999999753
No 412
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.47 E-value=54 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc
Q 002196 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN 37 (954)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (954)
.++.+=|+++|+++| .++..|-+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467788899999999 999999999998763
No 413
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.42 E-value=2.1e+02 Score=26.70 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCCc------c--HHHHHHHHhcccHHHHHHHHccC-CCcCCCccchhHHHH
Q 002196 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFF------N--MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFFE 75 (954)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~------~--~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~ 75 (954)
.+....+-..++...-|.++...|++=..... + ...-......|+|++|+..+..+ ...|+......+.|
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~- 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY- 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH-
Confidence 34456667778888889999988886332111 1 22233556789999999998886 22232221111222
Q ss_pred HHHHHHHH---------------HHhcCCHHHHHHHHHHhccc
Q 002196 76 IRKQKYLE---------------ALDKRDRAKAVEILVKDLKV 103 (954)
Q Consensus 76 i~~~~~~e---------------ll~~~~~~~a~~~l~~~~~~ 103 (954)
..-..+++ +++.++..+|+..+++.+.-
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 22233332 13457788999999876553
No 414
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=21.25 E-value=5.1e+02 Score=29.68 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhhhcC-hHHHHHHHHHhcCCCcc-----HHHHHHHHhcccHHHHHHHHccC
Q 002196 5 SRELVFLILQFLDEEK-FKETVHKLEQDSGFFFN-----MRYFEDMVTNGEWDEVEKYLSGF 60 (954)
Q Consensus 5 ~~e~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~ 60 (954)
..|....+-..+.+.| |.++...+++=-.+..+ ...=.-....|++++|+..+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555 55555555543333322 01111223456666666665544
No 415
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=21.07 E-value=8.5e+02 Score=26.71 Aligned_cols=312 Identities=11% Similarity=0.070 Sum_probs=150.9
Q ss_pred eeeCCCCCcceeecCCCCCcceEEEecCCCCeeEEEEcCCCCeEEEEEEcCCe---------------------------
Q 002196 328 VAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD--------------------------- 380 (954)
Q Consensus 328 ~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~ll~~g~~dg~--------------------------- 380 (954)
.+|.-+|..++......- ++.-.|-..+....|.-||+.=+++.+.+|+
T Consensus 154 ~aY~ldG~~LW~idlg~n----i~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 154 DAYKLDGTKLWRINLGKN----IRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp EEECTTSCEEEEEECCTT----SCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred EEEECCCCEEEEEcCCCC----cccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 356666766664433210 1111255678889999999877888877776
Q ss_pred -EEEEeCCCCceeeeeeeEEEeccCCCccccc-cccCCCCCC--eEEEEEcc-CCCEEEEEE---cCCEEEEEEeeCCcc
Q 002196 381 -VMLWEVGSRERIAVKSFKVWELGACSMPLQA-SLSSDYTAS--VNRVMWSP-DGTLFGVAY---SKHIVHLYTYHGGDE 452 (954)
Q Consensus 381 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~--V~~l~~sp-dg~~l~s~~---~dg~i~iwd~~~~~~ 452 (954)
+.|+|=.+|+.+.+..+ ......... .-..++... ..++++-. +...++.+- .-..+..||..+++.
T Consensus 230 yL~vfdG~TG~~l~~~~~-----~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L 304 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANF-----EPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKL 304 (591)
T ss_dssp EEEEEETTTCCEEEEEEC-----SSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEE
T ss_pred EEEEEeCCCCCEEecccC-----CCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCce
Confidence 78888888877754221 100000000 000001111 12222211 112233321 112466677666542
Q ss_pred eeeeeeee-------------cccCCEEEEEEecCCCceEEEEEcCCCeEEEEECCCCceEEEe-ccCCCCeEEEeeecc
Q 002196 453 LRNHLEIE-------------AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHK 518 (954)
Q Consensus 453 ~~~~~~~~-------------~h~~~v~~~~~s~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~ 518 (954)
.. .-.+. .|. +.-..+.-||+. -|+.|+. ++| ..|+.+... .+|...+....|.|+
T Consensus 305 ~~-~W~~d~~~~~~~~~~gqg~h~--~~vaDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~ 374 (591)
T 2zux_A 305 SK-LWTLDSSKSGNEAFAGQGNHN--LSIADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPG 374 (591)
T ss_dssp EE-EEEEETTSTTCGGGSSCCCSC--CEEECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTT
T ss_pred EE-EEEecCCCCCcccccccCCCC--CeeEeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCC
Confidence 11 11111 132 333344456654 3554442 334 445544443 368888887888888
Q ss_pred CCccEEEEEecCC----eEEEEeCCCCCceeEeeCC--CCceEEEEECCCCC--EEEEEEeCCCCceEEEEEeCCCCeEE
Q 002196 519 ENIQFIFSTATDG----KIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNESEGAVK 590 (954)
Q Consensus 519 ~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~--~l~~~~~~~~~~~~i~iwd~~~~~~~ 590 (954)
..|..++.+.+++ -..+.|..+++.+...... .+......|.|+.. .+.+ + -.+|+. +|+.+
T Consensus 375 r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~------~~l~~~-~G~~i 444 (591)
T 2zux_A 375 RPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---N------GSLYSA-KGVKI 444 (591)
T ss_dssp SSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---T------TEEECT-TSCBC
T ss_pred CCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---c------CceECC-CCCEe
Confidence 7777788777652 2445788877776655432 22333344555422 2222 0 124553 33333
Q ss_pred EEEecCCCCCeEEEEEeCCC-CEEEEEECCCeEEEEECCCCceeEEEecCC-----CCCCcceEEEC--CCCC--EEEEE
Q 002196 591 RTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADG-----GLQASPCIRFN--KEGI--LLAVS 660 (954)
Q Consensus 591 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s--~~~~--~l~s~ 660 (954)
.... ....-..+.|..+. ..++- .+.|.-|+...++....+...+ ....-.|+... -|.+ +|.-.
T Consensus 445 ~~~~--p~~~N~~i~WdGDl~relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t 519 (591)
T 2zux_A 445 GSGV--PSSTNFGIWWDGDLLREQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRT 519 (591)
T ss_dssp SSCC--CSCCSEEECCSSSSSCEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEE
T ss_pred cCCC--CCCcceeEEECCCCcHhhhC---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEe
Confidence 2210 11122346676665 34443 2478889987776444444321 11122233333 2332 34334
Q ss_pred eCCCcEEEEEccC
Q 002196 661 TNDNGIKILANAD 673 (954)
Q Consensus 661 ~~dg~i~iwd~~~ 673 (954)
.++..++||....
T Consensus 520 ~D~~~LrIYtt~~ 532 (591)
T 2zux_A 520 EDSSALRIYTTTI 532 (591)
T ss_dssp TTSSEEEEECCCC
T ss_pred CCCCeEEEEeCCC
Confidence 4556799997643
No 416
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.97 E-value=14 Score=30.43 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=24.7
Q ss_pred HHHHHhcCCCccHHHHHHHHhcccHHHHHHHHccC
Q 002196 26 HKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60 (954)
Q Consensus 26 ~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (954)
..+-+|||++..+..+-..| +|+||+++..++..
T Consensus 31 i~vl~~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 64 (109)
T 1yqh_A 31 IEVVQQSGVRYEVGAMETTL-EGELDVLLDVVKRA 64 (109)
T ss_dssp HHHHHHSCSEEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 33445899988877776666 49999988876643
Done!